Citrus Sinensis ID: 038577

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860
Protein Sequence
MNYRFQNLLGAPYRGGNAVLSQNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPKRALILSLRLNEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLLESCPHLEFMLRWCQELCKTHGNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSVGAKK
Secondary Structure (PSIPRED)
cccccccccccccccccEEEcccccEEEEcccEEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEccccccEEEEEEcccccEEEEEcccEEEEEEcccccccccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccccccEEcccccccEEEEEEccccccccEEEEEEEEcccEEEEEEEEcccccEEEEccccccccccccccEEEEEEcccccccccccccEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEEEEccccEEEEEEcccccEEEEEEccccEEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEccccccccccEEEEEEcccccEEEEEEccccEEEEEEccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccccccccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEccccccEEEEEEEccccEEcccccccEEEcccccccccccccccccEEEcccccccccccccccEEEEEEcccccEEEEEEcccEEEEEcccccEEccccccccccHHHHHHHHcccccEEEEEEHHcccHHHHHHHHHHHcccccHHHHcccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccccEEEEEEcccccEEEEcccEEEEEEEccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEcccEEEEEEccccccccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccccccccEEEEEccccccEEEEEEccccccccEEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEccccccEEEEEEccccEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEccccccccEEEcccHEEEccccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEccccEEEEEEEcccccEEEEccccccEEEccccccccccccccccEcccccccccccccccEEEEEEEEcccccEEEEEccccEEEEEccccEEEccccccccccHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccc
Coil and Loop (DISEMBL)
mnyrfqnllgapyrggnavlsqntklispvgnrvsVTDLIksktvtlpvesssnicriavspdgtflltvdenqrchfINLHCHVVLHrvrfkypvnailfspngkyiavGTGKLVQiwrspgfkkeVFAFELIRTLADCndkvtalnwspdsnyllvgSKDLAVRLFYVKEKlkgihtnkpflllghrdsvvgcffsvdkktdkVNRIYTIARDCymfswgfsgndgkidetmedseppspgtperrvkkwgllrkddfsqapskvtacdyhrglDMVVVGFSNgvfglyqmpdfVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKqqghyfdvnclayspdsqllatgaddnkvkVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRawdlfryrnfrtfttpssrqFVSLasdqsgevicagTLDSFEIFVWSMKTGRLLDilsghegpvhglvfsptnatlassswdkTVRLWNVFegkgsvesfphthdvltvvyrpdgrqlacstldgqihfwdplngelmytiegrrdisggrlmtdrrsaansssgkcfttlcysadgsyilaggsskyicmYDVADQVLLRRFQITHNLSLDGVIDflnsknmteagpmdlidddnsdteegvekqtrgkldydlpgalpnrgrptiqtkclkiaptgrnfVAATTEGVLVYsidesfifdptdldidvtpeAVDAALNEDQPKRALILSLRLNEDNLIKKCIfaispvdipavassipYRYMQRLIEALSDLLESCPHLEFMLRWCQELCKTHGNTIQQNSRNLLPSLKSLQKSITRIHQDLadtcssneYMLQYLCSVGAKK
Flexible Loop (DISEMBL)
MNYRFQNLLGAPYRGGNAVLSqntklispvgnrvsVTDLIKSKtvtlpvesssnicrIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTalnwspdsnylLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFfsvdkktdkvNRIYTIARDCYMFSWGFSGNDGKIDETmedseppspgtperrvkkwgllrkddfsqapSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFrtfttpssrqFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGkgsvesfphtHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDrrsaansssgkcFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVekqtrgkldydlpgalpnrgrptiQTKCLKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDaalnedqpKRALILSLRLNEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLLESCPHLEFMLRWCQELCKTHGNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSVGAKK
Low Complexity Region (SEG)
MNYRFQNLLGAPYRGGNAVLSQNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPKRALILSLRLNEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLLESCPHLEFMLRWCQELCKTHGNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSVGAKK
Disordered region (IsUnstruct)
****FQNLLGAPYRGGNAVLSQNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSG**************************WGLLRK*DF**APSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI******************KCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLN*********************************************PTIQTKCLKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPKRALILSLRLNEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLLESCPHLEFMLRWCQELCKTHGNTIQQN***LL*****LQKSITRIHQDLADTCSSNEYMLQYLCSV****
Disordered Region (DISOPRED)
MNYRFQNLLGAPYRGGNAVLSQNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPKRALILSLRLNEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLLESCPHLEFMLRWCQELCKTHGNTIQ***RNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSVG***
Disordered Region (DISEMBL)
MNYRFQNLLGAPYRGGNAVLSQNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDE***************RVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMT**********GKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDN************GKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPKRALILSLRLNEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLLESCPHLEFMLRWCQELCKTHGNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSVGAKK
Disordered Region (DISPRO)
MNYRFQNLLGAPYRGGNAVLSQNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPKRALILSLRLNEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLLESCPHLEFMLRWCQELCKTHGNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSVG***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNYRFQNLLGAPYRGGNAVLSQNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPKRALILSLRLNEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLLESCPHLEFMLRWCQELCKTHGNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSVGAKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	860	2.2.26 [Sep-21-2011]
Q15269	919	Periodic tryptophan prote	yes	no	0.977	0.915	0.424	0.0
Q5RFQ3	918	Periodic tryptophan prote	yes	no	0.977	0.916	0.422	0.0
Q9C1X1	854	Periodic tryptophan prote	yes	no	0.961	0.968	0.437	0.0
P25635	923	Periodic tryptophan prote	yes	no	0.968	0.902	0.429	0.0
Q8BU03	919	Periodic tryptophan prote	yes	no	0.977	0.915	0.414	0.0
Q9C270	899	Periodic tryptophan prote	N/A	no	0.960	0.918	0.420	0.0
Q54PE0	922	Periodic tryptophan prote	yes	no	0.969	0.904	0.390	0.0
P91341	910	Periodic tryptophan prote	yes	no	0.969	0.916	0.337	1e-143
Q8YTC2	1258	Uncharacterized WD repeat	yes	no	0.616	0.421	0.233	3e-37
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.608	0.342	0.249	4e-37

>sp|Q15269|PWP2_HUMAN Periodic tryptophan protein 2 homolog OS=Homo sapiens GN=PWP2 PE=1 SV=2

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/893 (42%), Positives = 548/893 (61%), Gaps = 52/893 (5%)

Query: 3   YRFQNLLGAPYRGGNAVLS-QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVS 61
           YRF NLLG  YR GN   +     +ISPVGNRV+V DL  +K+ TLP+ +  N+  + +S
Sbjct: 5   YRFSNLLGTVYRRGNLNFTCDGNSVISPVGNRVTVFDLKNNKSDTLPLATRYNVKCVGLS 64

Query: 62  PDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRS 121
           PDG   + VDE      ++L C  VLH   FK  V+++ FSP+G+   V  G + Q++ +
Sbjct: 65  PDGRLAIIVDEGGDALLVSLVCRSVLHHFHFKGSVHSVSFSPDGRKFVVTKGNIAQMYHA 124

Query: 122 PGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNK 181
           PG K+E  AF L +T     D+ T ++W+ DS   +VGSKD++  +F  +     I+   
Sbjct: 125 PGKKREFNAFVLDKTYFGPYDETTCIDWTDDSRCFVVGSKDMSTWVFGAERWDNLIY--- 181

Query: 182 PFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSW---------------GFSGN 226
            + L GH+D++V CFF  +        +Y++++D  +  W               G+  +
Sbjct: 182 -YALGGHKDAIVACFFESNSLD-----LYSLSQDGVLCMWQCDTPPEGLRLKPPAGWKAD 235

Query: 227 --------------DGKIDETMEDSEPPSPGTPERRVK-----KWGLLRKDDFSQAPSKV 267
                         +G  + T+     P+      +VK     K+   ++ DF+     +
Sbjct: 236 LLQREEEEEEEEDQEGDRETTIRGKATPAEEEKTGKVKYSRLAKYFFNKEGDFNN----L 291

Query: 268 TACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK 327
           TA  +H+   ++V GF++G+F L+++P+F  IH LSIS + I +   N  G+W+ FGC+ 
Sbjct: 292 TAAAFHKKSHLLVTGFASGIFHLHELPEFNLIHSLSISDQSIASVAINSSGDWIAFGCSG 351

Query: 328 LGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTF 387
           LGQLLVWEW+SESY+LKQQGH+  +  LAYSPD Q + TG DD KVKVW   SGFCFVTF
Sbjct: 352 LGQLLVWEWQSESYVLKQQGHFNSMVALAYSPDGQYIVTGGDDGKVKVWNTLSGFCFVTF 411

Query: 388 TEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGE 447
           TEH++ VT + F A  + ++++S+DGTVRA+DL RYRNFRTFT+P   QF  +A D SGE
Sbjct: 412 TEHSSGVTGVTFTATGYVVVTSSMDGTVRAFDLHRYRNFRTFTSPRPTQFSCVAVDASGE 471

Query: 448 VICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVF 507
           ++ AG  DSFEIFVWSM+TGRLLD+LSGHEGP+ GL F+P  + LAS+SWDKTVRLW++F
Sbjct: 472 IVSAGAQDSFEIFVWSMQTGRLLDVLSGHEGPISGLCFNPMKSVLASASWDKTVRLWDMF 531

Query: 508 EGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGR 567
           +   + E+   T D L V +RPDG +LA +TL+ QI FWDP N     +IEGR D+  GR
Sbjct: 532 DSWRTKETLALTSDALAVTFRPDGAELAVATLNSQITFWDPENAVQTGSIEGRHDLKTGR 591

Query: 568 LMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSL 627
              D+ +A +++ GK FT LCYSADG  ILAGG SK++C+Y V +Q+L++RF+I+ NLSL
Sbjct: 592 KELDKITAKHAAKGKAFTALCYSADGHSILAGGMSKFVCIYHVREQILMKRFEISCNLSL 651

Query: 628 DGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKC 687
           D + +FLN + MTE G + LID D +  E+GV     G    D+        +P I+   
Sbjct: 652 DAMEEFLNRRKMTEFGNLALIDQD-AGQEDGVAIPLPGVRKGDMSS---RHFKPEIRVTS 707

Query: 688 LKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPKRALILSL 747
           L+ +PTGR + A TTEG+L+YS+D   +FDP +LD  VTP  V  AL +    RA++++L
Sbjct: 708 LRFSPTGRCWAATTTEGLLIYSLDTRVLFDPFELDTSVTPGRVREALRQQDFTRAILMAL 767

Query: 748 RLNEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLLESCPHLEFMLRWCQELC 807
           RLNE  L+++ + A+   +I  V SS+P  Y+++++E L+   E   HLEF L W  +L 
Sbjct: 768 RLNESKLVQEALEAVPRGEIEVVTSSLPELYVEKVLEFLASSFEVSRHLEFYLLWTHKLL 827

Query: 808 KTHGNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSVGAKK 860
             HG  ++  +  LLP ++ LQKSI R   DL+  CS N Y +QY  +V  ++
Sbjct: 828 MLHGQKLKSRAGTLLPVIQFLQKSIQRHLDDLSKLCSWNHYNMQYALAVSKQR 880

Homo sapiens (taxid: 9606)

>sp|Q5RFQ3|PWP2_PONAB Periodic tryptophan protein 2 homolog OS=Pongo abelii GN=PWP2 PE=2 SV=1

 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/890 (42%), Positives = 546/890 (61%), Gaps = 49/890 (5%)

Query: 3   YRFQNLLGAPYRGGNAVLS-QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVS 61
           YRF NLLG  YR GN   +     +ISPVGNRV+V DL  +K+ TLP+ +  N+  + +S
Sbjct: 5   YRFSNLLGTVYRRGNLNFTCDGNSVISPVGNRVTVFDLKNNKSDTLPLATRYNVKCVGLS 64

Query: 62  PDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRS 121
           PDG   + VDE      ++L C  VLH   FK  V+++ FSP+G+   V  G + Q++ +
Sbjct: 65  PDGRLAIIVDEGGDALLVSLVCRSVLHHFHFKGSVHSVSFSPDGRKFVVTKGNIAQMYHA 124

Query: 122 PGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNK 181
           PG K+E  AF L +T     D+ T ++W+ DS   +VGSKD++  +F  +     I+   
Sbjct: 125 PGKKREFNAFVLDKTYFGPYDETTCIDWTDDSRCFVVGSKDMSTWVFGAERWDNLIY--- 181

Query: 182 PFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSW---------------GFSGN 226
            + L GH+D++V CFF  +        +Y++++D  +  W               G+  +
Sbjct: 182 -YALGGHKDAIVACFFESNSLD-----LYSLSQDGVLCMWQCDTPPEGLRLKPPAGWKAD 235

Query: 227 -----------DGKIDETMEDSEPPSPGTPERRVK-----KWGLLRKDDFSQAPSKVTAC 270
                      +G  + T+     P+      +VK     K+   ++ DF+     +TA 
Sbjct: 236 LLQREQEEEEEEGDRETTIRGKATPAEEEKTGKVKYSRLAKYFFNKEGDFNN----LTAA 291

Query: 271 DYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQ 330
            +H+   ++V GF++G+F L+++P+F  IH LSIS + I +   N  G+W+ FGC+ LGQ
Sbjct: 292 AFHKKSHLLVTGFASGIFHLHELPEFNLIHSLSISDQSIASVAINSSGDWIAFGCSGLGQ 351

Query: 331 LLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEH 390
           LLVWEW+SESY+LKQQGH+  +  LAYSPD Q + TG DD KVKVW   SGFCFVTFTEH
Sbjct: 352 LLVWEWQSESYVLKQQGHFNSMVALAYSPDGQYIVTGGDDGKVKVWNTLSGFCFVTFTEH 411

Query: 391 TNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVIC 450
           ++ VT + F A  + ++++S+DGTVRA+DL RYRNFRTFT+P   QF  +A D SGE++ 
Sbjct: 412 SSGVTGVTFTATGYVVVTSSMDGTVRAFDLHRYRNFRTFTSPRPTQFSCVAVDASGEIVS 471

Query: 451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGK 510
           AG  DSFEIFVWSM+TGRLLD+LSGHEGP+ GL F+P  + LAS+SWDKT RLW++F+  
Sbjct: 472 AGAQDSFEIFVWSMQTGRLLDVLSGHEGPISGLCFNPMKSILASASWDKTERLWDMFDSW 531

Query: 511 GSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMT 570
            + E+   T D L V +RPDG +LA +TL+ QI FWDP N     +IEGR  +  GR   
Sbjct: 532 RTKETLALTSDALAVTFRPDGAELAVATLNSQITFWDPENAVQTGSIEGRHHLKTGRKEL 591

Query: 571 DRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGV 630
           D+ +A +++ GK FTTLCYSADG  ILAGG SK++C+Y V +Q+L++RF+I+ NLSLD +
Sbjct: 592 DKITAKHAAKGKAFTTLCYSADGQSILAGGMSKFVCIYHVREQILMKRFEISCNLSLDAM 651

Query: 631 IDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKI 690
            +FLN + MTE G + LID D +  E+GV     G    D+        +P I+   L+ 
Sbjct: 652 EEFLNRRKMTEFGNLALIDQD-AGQEDGVAIPLPGVRKGDMS---SRHFKPEIRVTSLRF 707

Query: 691 APTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPKRALILSLRLN 750
           +PTGR + A TTEG+L++S+D   +FDP +LD  +TP  V  AL +    RA++++LRLN
Sbjct: 708 SPTGRCWAATTTEGLLIFSLDTRVLFDPFELDTSITPGRVREALRQQDFTRAILMALRLN 767

Query: 751 EDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLLESCPHLEFMLRWCQELCKTH 810
           E  L+++ + A+   +I  V SS+P  Y+++++E L+   E   HLEF L W   L   H
Sbjct: 768 ESKLVQEALEAVPSGEIEVVTSSLPELYVEKVLEFLASSFEVSRHLEFYLLWTHRLLMLH 827

Query: 811 GNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSVGAKK 860
           G  ++  +  LLP ++ LQKSI R   DL+  CS N Y +QY  +V  ++
Sbjct: 828 GQKLKSRAGTLLPVIQFLQKSIQRHLDDLSKLCSWNRYNMQYALAVSKQR 877

Pongo abelii (taxid: 9601)

>sp|Q9C1X1|PWP2_SCHPO Periodic tryptophan protein 2 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC713.04c PE=1 SV=1

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/862 (43%), Positives = 543/862 (62%), Gaps = 35/862 (4%)

Query: 3   YRFQNLLGAPYRGGNAVLSQNT-KLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVS 61
           + F NL+G  +  GN V + +   ++SPVGNRVSV +L  + + T P E+  NI  IA+S
Sbjct: 5   FGFSNLVGTIFSKGNLVFTPDGFSILSPVGNRVSVYNLKDNTSYTFPFENHKNISHIALS 64

Query: 62  PDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRS 121
           P  T LL+VDE  RC   N     VLH   FK PV AI FSPNGK+ AV  GKL+Q+WR+
Sbjct: 65  PTSTLLLSVDEEGRCILCNFLRRSVLHYFNFKSPVGAIEFSPNGKFFAVSLGKLIQVWRT 124

Query: 122 PGF--KKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHT 179
           P    ++E   F L R      D + +++WS DS + +  SKDL  RL  V + ++G H 
Sbjct: 125 PNSLEEREFAPFVLHREYTGHFDDIVSISWSADSRFFISTSKDLTARLHSV-DPIEGFH- 182

Query: 180 NKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSG--NDGK-IDETMED 236
             P  L GH+++VV  FFS D++T     IYT+++D  +F W +S     G+ IDE  E+
Sbjct: 183 --PCALTGHKNTVVSGFFSKDQQT-----IYTVSKDGALFVWKYSPLFQAGEVIDEEAEE 235

Query: 237 SEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDF 296
           ++         R   W +  +  F+Q  SK+    +H   +++VVGFS+G+FG+Y++P F
Sbjct: 236 NKT--------RTHIWLIKERHYFNQN-SKLRCAAFHPTSNLLVVGFSSGLFGIYELPSF 286

Query: 297 VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLA 356
             ++ LSI++  I T   N  G+W+  G +KLGQLLVWEW+SESY+LKQQ HY  ++ L 
Sbjct: 287 TMLYQLSITQSNIDTLTVNSTGDWIAIGSSKLGQLLVWEWQSESYVLKQQSHYDALSTLQ 346

Query: 357 YSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVR 416
           YS D Q + TGADD K+KVW ++SGFC VTFT+HT+AV+ L F    + L S+SLDG+VR
Sbjct: 347 YSSDGQRIITGADDGKIKVWDMNSGFCIVTFTQHTSAVSGLCFSKRGNVLFSSSLDGSVR 406

Query: 417 AWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGH 476
           AWDL RYRNFRTFT PS  QF  +A D SGE++CAG+ DSFEIF+WS++TG+LL+ L+GH
Sbjct: 407 AWDLIRYRNFRTFTAPSRVQFSCIAVDPSGEIVCAGSQDSFEIFMWSVQTGQLLETLAGH 466

Query: 477 EGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLAC 536
           EGPV  L F+ + + LAS SWDKTVR+W++F   G VE  P   DVL++ + PDG+++  
Sbjct: 467 EGPVSSLSFNSSGSLLASGSWDKTVRIWDIFSRSGIVEPLPIPSDVLSLAFHPDGKEVCV 526

Query: 537 STLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYI 596
           ++LDGQ+ FW+   G+    I+GR+D+SGGR   D R+A NSS  K FT++CYSADGS +
Sbjct: 527 ASLDGQLTFWNVQEGKQTSLIDGRKDLSGGRRFDDARTAENSSLNKTFTSICYSADGSCV 586

Query: 597 LAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTE 656
           L+ G+SKY+C+YD+   VL+++FQ++ N SL GV + LNS+ MTEAG ++LID       
Sbjct: 587 LSAGTSKYVCLYDIITGVLIKKFQLSKNESLQGVQEMLNSRKMTEAGSIELID------T 640

Query: 657 EGVEKQTRGKLDYDLPGAL-----PNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYSID 711
           +G E     ++D  LPGA        + RP I    ++ +P+G  F AATTEG+++YS+ 
Sbjct: 641 QGEESDLEDRIDRTLPGARRGDLSARKTRPEIICHGVQFSPSGGAFAAATTEGLMIYSLY 700

Query: 712 ESFIFDPTDLDIDVTPEAVDAALNEDQPKRALILSLRLNEDNLIKKCIFAISPVDIPAVA 771
             F+FDP +LD+D+TP        E +   +L+++LRLNE  +++K   +I   D+  V 
Sbjct: 701 NDFLFDPINLDMDITPSTTLTMCAEGEFLISLVMALRLNEYKVVQKVYESIPITDVEHVV 760

Query: 772 SSIPYRYMQRLIEALSDLLESCPHLEFMLRWCQELCKTHGNTIQQNSRNLLPSLKSLQKS 831
             +P  Y+   +  LS      PH+EF LRW + +   HG  +++ +      L SLQKS
Sbjct: 761 QELPVSYLANFMGYLSSFAAETPHIEFHLRWMKSVLTYHGEYLRRKNFEFASQLTSLQKS 820

Query: 832 ITRIHQDLADTCSSNEYMLQYL 853
           I  + + L+   S+NE+ L +L
Sbjct: 821 IVVLSKRLSQLSSNNEFQLSFL 842

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P25635|PWP2_YEAST Periodic tryptophan protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PWP2 PE=1 SV=2

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/869 (42%), Positives = 539/869 (62%), Gaps = 36/869 (4%)

Query: 2   NYRFQNLLGAPYRGGNAVLSQNTK-LISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAV 60
           +++F NLLG  YR GN   S + K L+SPVGNRVSV DLI +K+ T   E   NI  I +
Sbjct: 4   DFKFSNLLGTVYRQGNITFSDDGKQLLSPVGNRVSVFDLINNKSFTFEYEHRKNIAAIDL 63

Query: 61  SPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWR 120
           +  GT L+++DE+ R   +N     VLH   FK   +A+ FSP+G+  A+ +G+ +QIW+
Sbjct: 64  NKQGTLLISIDEDGRAILVNFKARNVLHHFNFKEKCSAVKFSPDGRLFALASGRFLQIWK 123

Query: 121 SPGFKKE-VFA-FELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIH 178
           +P   K+  FA F   R  A     +T+L WS DS ++L  SKDL+ +++ V  + K + 
Sbjct: 124 TPDVNKDRQFAPFVRHRVHAGHFQDITSLTWSQDSRFILTTSKDLSAKIWSVDSEEKNLA 183

Query: 179 TNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSE 238
                   GHRD V+G FFS D++     +IYT+++D  +F W F+    +  +  ++  
Sbjct: 184 ATT---FNGHRDYVMGAFFSHDQE-----KIYTVSKDGAVFVWEFTK---RPSDDDDNES 232

Query: 239 PPSPGTPERRVKK--WGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDF 296
                  E  + K  W + +K  F    +KV    +H    ++ VGF++G F LY +PDF
Sbjct: 233 EDDDKQEEVDISKYSWRITKKHFFYANQAKVKCVTFHPATRLLAVGFTSGEFRLYDLPDF 292

Query: 297 VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLA 356
             I  LS+ +  + T   N+ G WL FG +KLGQLLV+EW+SESYILKQQGH+   N LA
Sbjct: 293 TLIQQLSMGQNPVNTVSVNQTGEWLAFGSSKLGQLLVYEWQSESYILKQQGHFDSTNSLA 352

Query: 357 YSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVR 416
           YSPD   + T ++D K+KVW ++SGFC  TF EHT++VTA+ F      + S+SLDGTVR
Sbjct: 353 YSPDGSRVVTASEDGKIKVWDITSGFCLATFEEHTSSVTAVQFAKRGQVMFSSSLDGTVR 412

Query: 417 AWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGH 476
           AWDL RYRNFRTFT     QF  LA D SGEV+CAG+LD+F+I VWS++TG+LLD LSGH
Sbjct: 413 AWDLIRYRNFRTFTGTERIQFNCLAVDPSGEVVCAGSLDNFDIHVWSVQTGQLLDALSGH 472

Query: 477 EGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLAC 536
           EGPV  L FS  N+ LAS+SWDKT+R+W++F     VE      DVL +  RPDG+++A 
Sbjct: 473 EGPVSCLSFSQENSVLASASWDKTIRIWSIFGRSQQVEPIEVYSDVLALSMRPDGKEVAV 532

Query: 537 STLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYI 596
           STL GQI  ++  + + +  I+ R+DI  GR   DR +A NS   K FTT+ YS DG  I
Sbjct: 533 STLKGQISIFNIEDAKQVGNIDCRKDIISGRFNQDRFTAKNSERSKFFTTIHYSFDGMAI 592

Query: 597 LAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDD--DNSD 654
           +AGG++  IC+YDV ++VLL+RF ++ N++L+G ++FLNSK MTEAG +DLIDD  +NSD
Sbjct: 593 VAGGNNNSICLYDVPNEVLLKRFIVSRNMALNGTLEFLNSKKMTEAGSLDLIDDAGENSD 652

Query: 655 TEEGVEKQTRGKLDYDLPGALPNRG--------RPTIQTKCLKIAPTGRNFVAATTEGVL 706
            E+        ++D  LPG+   RG        RP ++   ++ +PT   F AA+TEG+L
Sbjct: 653 LED--------RIDNSLPGS--QRGGDLSTRKMRPEVRVTSVQFSPTANAFAAASTEGLL 702

Query: 707 VYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPKRALILSLRLNEDNLIKKCIFAISPVD 766
           +YS +++ +FDP DLD+DVTP +   AL E Q   AL+++ RLNE+ LI K   AI   +
Sbjct: 703 IYSTNDTILFDPFDLDVDVTPHSTVEALREKQFLNALVMAFRLNEEYLINKVYEAIPIKE 762

Query: 767 IPAVASSIPYRYMQRLIEALSDLLESCPHLEFMLRWCQELCKTHGNTIQQNSRNLLPSLK 826
           IP VAS+IP  Y+ R+++ + D      H+EF L W + L    G  I ++      +++
Sbjct: 763 IPLVASNIPAIYLPRILKFIGDFAIESQHIEFNLIWIKALLSASGGYINEHKYLFSTAMR 822

Query: 827 SLQKSITRIHQDLADTCSSNEYMLQYLCS 855
           S+Q+ I R+ +++ +T + N+Y  ++L S
Sbjct: 823 SIQRFIVRVAKEVVNTTTDNKYTYRFLVS 851

Required for bud-site selection and cell separation. Also involved in nucleolar processing of pre-18S ribosomal RNA.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8BU03|PWP2_MOUSE Periodic tryptophan protein 2 homolog OS=Mus musculus GN=Pwp2 PE=1 SV=1

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/893 (41%), Positives = 548/893 (61%), Gaps = 52/893 (5%)

Query: 3   YRFQNLLGAPYRGGNAVLSQN-TKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVS 61
           YRF NLLG  YR GN   + +   +ISPVGNRV+V DL  +++ TLP+ +  NI  + +S
Sbjct: 5   YRFSNLLGTVYRCGNLNFTHDGNSVISPVGNRVTVFDLKNNRSNTLPLATKYNIKCVGLS 64

Query: 62  PDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRS 121
           PDG   + VDE      ++L C  VLH   FK  V+++ FSP+G+   V  G + Q++ +
Sbjct: 65  PDGRLAIIVDEGGAALLVSLVCRSVLHHFHFKGSVHSVSFSPDGRKFVVTKGNIAQMYHA 124

Query: 122 PGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNK 181
           PG K+E  AF L +T     D+ T ++W+ DS   +VGSKD++  +F  +     I+   
Sbjct: 125 PGKKREFNAFVLDKTYFGPYDETTCIDWTDDSKCFVVGSKDMSTWVFGAERWDNLIY--- 181

Query: 182 PFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWG---------FSGNDGKIDE 232
            + L GH+D++V CFF  +        +Y++++D  +  W               G   +
Sbjct: 182 -YALSGHKDAIVACFFESNSLD-----LYSLSQDGALCVWQCDTPPEGLRLKAPRGWKAD 235

Query: 233 TMEDSE------------------PPSPGTPER-------RVKKWGLLRKDDFSQAPSKV 267
            ++  +                    +P   ER       R+ K+ L ++ DF+     +
Sbjct: 236 ILQREKEEEEEDEEEGDRETTIRGKTTPAEQERVGKVKYSRLAKYFLNKEGDFNN----L 291

Query: 268 TACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK 327
           T+  YH+   ++V GF++G+F L+++P+F  IH LSIS +++ +   N  G+W+ FGC+ 
Sbjct: 292 TSAAYHKKTHLLVTGFASGIFHLHELPEFNLIHSLSISDQRVASVAINSSGDWIAFGCSG 351

Query: 328 LGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTF 387
           +GQLLVWEW+SESY+LKQQGH+  +  LAYSPD Q + TG DD KVKVW   SGFCFVT 
Sbjct: 352 MGQLLVWEWQSESYVLKQQGHFNSMVALAYSPDGQYIVTGGDDGKVKVWNTLSGFCFVTL 411

Query: 388 TEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGE 447
           TEH++ VT + F    H ++++SLDGTVRA+DL RYRNFRTFT+P   QF  +A D SGE
Sbjct: 412 TEHSSGVTGVTFTTTGHVIVTSSLDGTVRAFDLHRYRNFRTFTSPRPTQFSCVAVDSSGE 471

Query: 448 VICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVF 507
           ++ AG  DSFEIFVWSM+TGRLLD+LSGHEGPV GL F+P  + LAS+SWDKTVRLW++F
Sbjct: 472 IVSAGAQDSFEIFVWSMQTGRLLDVLSGHEGPVSGLCFNPMKSILASASWDKTVRLWDMF 531

Query: 508 EGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGR 567
           +   + E+   T D L V +RPDG +LA +TL+ QI FWDP N   + +IEGR D+  GR
Sbjct: 532 DSWRTKETLTLTSDALAVTFRPDGAELAVATLNSQITFWDPENAVQVGSIEGRHDLKTGR 591

Query: 568 LMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSL 627
              D+ +A +S+ GK FTTLCYSADG  ILAGG SK++C+Y V +Q+L++RF+++ NLSL
Sbjct: 592 KELDKITAKHSAKGKAFTTLCYSADGQSILAGGMSKFVCLYHVREQILVKRFELSCNLSL 651

Query: 628 DGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKC 687
           D + +FLN + MTE G + LID D  + E GV     G    D+        +P I+   
Sbjct: 652 DAMEEFLNRRKMTEFGNLALIDQDAGE-ENGVAVPLPGVRKGDMSS---RHFKPEIRVTS 707

Query: 688 LKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPKRALILSL 747
           L+ +PTGR + A +TEG+L++S+D   +FDP +LD  VTP  +  AL + +  RA++++ 
Sbjct: 708 LRFSPTGRCWAATSTEGLLIFSLDAQMLFDPFELDTSVTPGRIREALRQREFTRAILMAF 767

Query: 748 RLNEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLLESCPHLEFMLRWCQELC 807
           RLNE  L ++ + A+   +I  V++S+P  Y+ +++E L+   E   HLEF L W Q+L 
Sbjct: 768 RLNEKKLAQEALEAVPQNEIEVVSTSLPELYVVKVLEFLAASFEESRHLEFYLIWTQKLL 827

Query: 808 KTHGNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSVGAKK 860
            +HG  ++  +  LLP ++ LQK + R   D++  C  N + +QY+ +V  ++
Sbjct: 828 MSHGQRLKSRAGQLLPVVQFLQKGLQRHLDDVSKLCDWNRFNIQYVLAVSKQR 880

Mus musculus (taxid: 10090)

>sp|Q9C270|PWP2_NEUCR Periodic tryptophan protein 2 homolog OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=B18D24.40 PE=3 SV=1

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/866 (42%), Positives = 522/866 (60%), Gaps = 40/866 (4%)

Query: 2   NYRFQNLLGAPYRGGNAVLSQN-TKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAV 60
           +++F NLLG  Y  GN + S + T L SPVGNRV+V +L+ +K+ TLP     NI RI +
Sbjct: 4   DFKFSNLLGTVYCQGNLLFSPDGTHLFSPVGNRVTVFNLVDNKSYTLPFSHRKNIARIGL 63

Query: 61  SPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWR 120
           +P G  LL++DE+ +    N+   VVL+   FK PV A+ FSP+G++  VG G+ +++W 
Sbjct: 64  TPQGNLLLSIDEDGQAILTNVPRRVVLYHFSFKAPVTALSFSPSGRHFIVGLGRKIEVWH 123

Query: 121 SPGF-------KKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEK 173
            P         + E   F    T     D V  + WS DS + L  SKDL  R++ V ++
Sbjct: 124 VPSTPDANADGELEFAPFVKHHTHVQHFDDVRHIEWSHDSRFFLTSSKDLTARIWSVDQE 183

Query: 174 LKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDET 233
            +G     P +L GHR  VVG +FS D++T     IYT+++D  +F W +    G+ ++ 
Sbjct: 184 -EGF---TPTVLSGHRQGVVGAWFSKDQET-----IYTVSKDGAVFDWQYVAKPGQDEDM 234

Query: 234 MEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQM 293
           ++D               W ++ K  F Q  + V    +H   +++V GFSNG+FGLY+M
Sbjct: 235 VDDD-----------DLAWRIVNKHYFMQNSATVRCAAFHPESNLLVAGFSNGIFGLYEM 283

Query: 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVN 353
           PDF  IH LSIS+ +I     N+ G WL FG +KLGQLLVWEW+SESYILKQQGH+  +N
Sbjct: 284 PDFNMIHTLSISQNEIDFVTINKSGEWLAFGASKLGQLLVWEWQSESYILKQQGHFDSMN 343

Query: 354 CLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDG 413
            L YSPD Q + T ADD K+KVW   SGFC VTFTEHT+ +TA  F    + L ++SLDG
Sbjct: 344 SLVYSPDGQRIVTVADDGKIKVWDTESGFCIVTFTEHTSGITACEFSKKGNVLFTSSLDG 403

Query: 414 TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDIL 473
           ++RAWDL RYRNFRTFT P    F  +A D SGE++ AG++DSF+I +WS++TG+LLD L
Sbjct: 404 SIRAWDLIRYRNFRTFTAPERLSFSCMAVDPSGEIVAAGSVDSFDIHIWSVQTGQLLDRL 463

Query: 474 SGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQ 533
           SGHEGPV  L F+P    L S SWD+T R+W++F    + E      DVL + +RPD  Q
Sbjct: 464 SGHEGPVSSLAFAPNGGLLVSGSWDRTARIWSIFNRTQTSEPLQLNSDVLDIAFRPDSLQ 523

Query: 534 LACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADG 593
           +A STLDG + FW     E    ++GRRD+SGGR + DRR+AAN +  K F T+ YS DG
Sbjct: 524 IAISTLDGNLSFWSVSEAEQQAGLDGRRDVSGGRKIGDRRTAANVAGTKAFNTIRYSTDG 583

Query: 594 SYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNS 653
           S +LAGG+SKYIC+Y V   VLL+++ ++ NLS+ G  +FLNSK +TEAGP  L+D    
Sbjct: 584 SCLLAGGNSKYICLYSVTTMVLLKKYTVSVNLSIQGTQEFLNSKLLTEAGPQGLLD---- 639

Query: 654 DTEEGVEKQTRGKLDYDLPGAL-----PNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVY 708
             E+G       ++D  LPG+        R  P ++   +  +P G  F AA+TEG+L+Y
Sbjct: 640 --EQGEASDFEDRIDRSLPGSKRGDPSARRKNPEVRVNGVAFSPNGSAFCAASTEGLLIY 697

Query: 709 SIDESFIFDPTDLDIDVTPEAVDAALNEDQPK-RALILSLRLNEDNLIKKCIFAISPVDI 767
           S+D +  FDP DL++++TP +  A L +++   +AL+++ RLNE  LI++   AI   DI
Sbjct: 698 SLDTTIQFDPFDLNMEITPTSTLAVLEKEKDYLKALVMAFRLNEAGLIQRVFQAIPYTDI 757

Query: 768 PAVASSIPYRYMQRLIEALSDLLESCPHLEFMLRWCQELCKTHGNTIQQNSRNLLPSLKS 827
           P V    P  Y+ RL+  ++   E  PH+EF L W + L   HG  +  N   +   L+ 
Sbjct: 758 PLVVEQFPNVYVARLLRYVAAQTEQSPHVEFCLLWIKALVDKHGAWLSANRGKVDVELRV 817

Query: 828 LQKSITRIHQDLADTCSSNEYMLQYL 853
           + ++++++  ++      N YM+ YL
Sbjct: 818 VARAVSKMRDEIRKLADENVYMVDYL 843

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q54PE0|PWP2_DICDI Periodic tryptophan protein 2 homolog OS=Dictyostelium discoideum GN=pwp2 PE=3 SV=1

 Score =  636 bits (1640), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/891 (39%), Positives = 529/891 (59%), Gaps = 57/891 (6%)

Query: 3   YRFQNLLGAPYRGGNAVLSQN-TKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVS 61
           Y+F NLLG  Y  GN + + +   +ISPVGNR++V DL+   ++TLP++S  NI R+A+S
Sbjct: 5   YKFSNLLGTVYNKGNILFTPDGNTVISPVGNRLTVFDLVNHTSITLPIQSKYNIRRLALS 64

Query: 62  PDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRS 121
           P+G  L+T DE+     INL   VVL   +F     +ILFSPNG  IA+   + V ++++
Sbjct: 65  PNGQILITSDESGHTLIINLTRQVVLGEYKFFKTPKSILFSPNGAIIAIAVLEKVFLFKT 124

Query: 122 PGFKKEVFAFELIR-TLADCNDKVTALNWSPDSNYLLVGSKDLAV--------RLFYVKE 172
           P  +K+     LIR ++      V ++ WS DS  L++G K+  +        R+ Y + 
Sbjct: 125 PIIQKQ--PNPLIRLSVFTHKSAVISMCWSADSLKLMIGCKNGTLLIRQGKSERVSYFQV 182

Query: 173 KLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDE 232
           K  GI               + CFF  ++ T     I        + SW +  N+    E
Sbjct: 183 KGSGI---------------INCFFGNEEST-----IAYAVTPTGLASWDYKTNEEMEQE 222

Query: 233 TME---------------DSEPPSPGTPERRVKK--W---GLLRKDDFSQAPSKVTACDY 272
            +E               D E     T  +R+ K  W   G  + +++       T C +
Sbjct: 223 KLERVENGETAYLREEEMDEEKLKVITENQRLYKGRWIFKGFKKFENYGVKCKVKTVC-F 281

Query: 273 HRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLL 332
           H    +++VGFS G F LY+MP F  ++ L+IS   I+T+  N  G WL FGC++LGQLL
Sbjct: 282 HLKSKLLLVGFSTGQFILYEMPGFNQLYKLNISSHGISTSAINNTGEWLAFGCSELGQLL 341

Query: 333 VWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTN 392
           VWEWRSE+YILKQQGH +++N +AYSPD Q +ATG +D KVK+W  +SG+C++TFTEH  
Sbjct: 342 VWEWRSETYILKQQGHSYNMNTVAYSPDGQTIATGGEDGKVKIWNTTSGYCYITFTEHEG 401

Query: 393 AVTALHF--MANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVIC 450
            VTA+ +  +++ + + SA +DGT+RA+DL RYRNFRTF +P+  QF  LA D SGE+I 
Sbjct: 402 PVTAVKYSPVSSQNVVFSAGVDGTIRAFDLVRYRNFRTFVSPNKTQFSCLAVDPSGEIIA 461

Query: 451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGK 510
           AG+LDSFEI+VWS++TGRL DILSGH+ PV  L F P N  LAS+SWDK+ ++WN+FE +
Sbjct: 462 AGSLDSFEIYVWSVRTGRLTDILSGHQSPVCELAFDPINPFLASASWDKSCKIWNIFEDR 521

Query: 511 GSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMT 570
              ES  HT DVLT  Y  DG++   S LDG I  ++      +  I+G+ DI GGR   
Sbjct: 522 EIRESIQHTSDVLTCAYSQDGKKFIVSCLDGTIQIYETSTWGQIGLIDGKNDIMGGRGYK 581

Query: 571 DRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGV 630
           D   A N+S+G+ FT + ++ +G  I+AGG+SKYIC+Y +  QVL++++  + NLSLDG+
Sbjct: 582 DEILAKNNSAGRAFTKIAFTPNGECIIAGGNSKYICIYHIDQQVLIKKYSTSSNLSLDGI 641

Query: 631 IDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALP-NRGRPTIQTKCLK 689
              +N K + E G +D ++ D  D+++ + +Q +  L     G L     +   +T  + 
Sbjct: 642 TLDINWKRVGEFGHLDAMEKD-FDSDDDLYQQNKEYLTGSSKGDLSKRTTKKKQKTTSIS 700

Query: 690 IAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPKRALILSLRL 749
           ++PTGR +  +TTEG+L+YS+D+   FDPTDL ID+ P+++ + LN     ++LI+S++L
Sbjct: 701 VSPTGRAWAVSTTEGLLIYSLDDFLFFDPTDLSIDINPDSILSELNLKNYLKSLIMSIKL 760

Query: 750 NEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLLESCPHLEFMLRWCQELCKT 809
           NE  +I+K   +I   +I  V    P  Y++  I+ LS   E   HLEF ++W + +   
Sbjct: 761 NEKPIIEKVFESIPFNEIQLVCQEFPIYYLKNFIQFLSGYFEKNHHLEFQMKWVKLISIY 820

Query: 810 HGNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSVGAKK 860
           HG  I+ NS +++ SL++LQK+IT+ + D++  C  N + ++Y  +V  K+
Sbjct: 821 HGKYIKTNSLSMITSLRNLQKTITQTYNDISKVCDDNIFSMEYFKTVLLKE 871

Dictyostelium discoideum (taxid: 44689)

>sp|P91341|PWP2_CAEEL Periodic tryptophan protein 2 homolog OS=Caenorhabditis elegans GN=F55F8.3 PE=3 SV=2

 Score =  511 bits (1316), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 298/882 (33%), Positives = 473/882 (53%), Gaps = 48/882 (5%)

Query: 2   NYRFQNLLGAPYRGGNAVLSQNT-KLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAV 60
           N++  N +G  YR G    S++   +ISP+GN++S+ DL  + + TL ++ + NI R+++
Sbjct: 4   NFKLSNCIGTVYRDGQVAFSKDGYSVISPIGNKLSIFDLRNNTSKTLDIDCNYNIKRLSI 63

Query: 61  SPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWR 120
           SP G  LL  DE    HF++L     ++  R   P+ ++ +SP+   +A+     +QI  
Sbjct: 64  SPSGYHLLASDERGVVHFVHLLSEFKIYTFRSNKPIGSLQWSPDATRVAICRENDLQIHE 123

Query: 121 -SPGFKKEVF-AFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKE-KLKGI 177
                + +V+  F L RT    +D +  ++WS D+N L+ G +D  VR+   K+ K   I
Sbjct: 124 FGKSIENKVYNPFSLSRTYKLSSDSLKTIDWSDDANLLVSGGEDRVVRVVGAKDFKNLFI 183

Query: 178 HTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKI------- 230
           H      L  H+  +V C F +    D +    T+ +      W  +   G++       
Sbjct: 184 HP-----LASHKGYIVNCQF-MKNSYDMI----TVCKRGLANVWTCNLRPGELVEGIWKK 233

Query: 231 -------DETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGF 283
                   E +ED E         + KK+  L +   S     VTA  +H+  +++   F
Sbjct: 234 DEEGSDDIEMLEDGEQKVEKIFFEKTKKY-WLSESSGSGKSVDVTAARFHKETNILATAF 292

Query: 284 SNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK--LGQLLVWEWRSESY 341
           +NGV  L+++P F  +H L +S  +I T  +N  G+WL  GC K    QL+VWEW+SESY
Sbjct: 293 NNGVIVLHEIPSFALVHNLRVSEMRIQTVAWNLTGDWLAIGCGKGSTAQLVVWEWQSESY 352

Query: 342 ILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMA 401
           ++KQQ H   +    YSPD  L+ATGA+D KVK+W   S FC VTF EHT+ VTA+ +  
Sbjct: 353 VMKQQAHSLRITTAEYSPDGSLMATGAEDGKVKIWNSRSSFCTVTFDEHTSGVTAVKWTQ 412

Query: 402 NNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFV 461
           +  ++LSASLDGTVRA DL RYRNFRT   P   Q  +LA D++G+++ AG  + F I++
Sbjct: 413 SGRAILSASLDGTVRAHDLKRYRNFRTLVCPEPTQLATLAVDKAGDLVIAGAKEVFNIYI 472

Query: 462 WSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHD 521
           WS +TG LLDILSGHE  +  +     +  + S SWD+T+++W + + +   E+   +H+
Sbjct: 473 WSFETGHLLDILSGHESAISSIDIHGNH--IVSGSWDRTIKMWTIVDSQA--ETVEVSHE 528

Query: 522 VLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSG 581
            L V + P G ++A  T DG I F++      + +I+ + D    R   D  +  +++  
Sbjct: 529 ALDVKFSPAGDEIAVLTSDGVITFFEAKEMINLGSIDTKLDTDPARGSRDTITRQSAAKT 588

Query: 582 KCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTE 641
           K FT + +S DG+ +LAGG S   C+Y V ++++L+++QIT N SLDGVI   N +N TE
Sbjct: 589 KTFTRIRFSPDGNLLLAGGESNNFCLYSVPERMILKKWQITANRSLDGVILDFNRRNFTE 648

Query: 642 AGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGAL-----PNRGRPTIQTKCLKIAPTGRN 696
            G M L+  D SD E+ +E     K+   LPG         R RP +    +   PTGR 
Sbjct: 649 FGNMQLV--DTSDEEDELEPN--NKMSIKLPGTKNFDLGERRARPEVNIYEVTYCPTGRR 704

Query: 697 FVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPKRALILSLRLNEDNLIK 756
           F   +TEGV VYS+D   +FDP  LD     E +  A+  +    A++ SLRLN    I 
Sbjct: 705 FAICSTEGVSVYSLDTISMFDPFQLDSQTNAEVIKRAVWNNDYSTAIMASLRLNNAQYIT 764

Query: 757 KCIFAISPVDIPAVASSIPYRYMQRLIEAL--SDLLESCPHLEFMLRWCQELCKTHGNTI 814
           +C+ + S   IP VASS+P  Y +RL++ +   +++ S  H+ F + W + + + HG  +
Sbjct: 765 ECLESTSISQIPLVASSLPLMYAERLLKWMVEGNVMSSTRHVHFYMIWLRAILQHHG--M 822

Query: 815 QQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSV 856
           Q   R  + +L  +Q+ +    Q +    + N++ L +L  +
Sbjct: 823 QLKGRADVATLTGIQQIVAHHQQHITKLANQNKFALNWLVKI 864

Caenorhabditis elegans (taxid: 6239)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score =  157 bits (397), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 152/652 (23%), Positives = 275/652 (42%), Gaps = 122/652 (18%)

Query: 50   ESSSNICRIAVSPDGTFLLTVDENQRCHF---------INLHCHVVLHRVRFKYPVNAIL 100
            E+  NI   A SP+G  L T D +  CH          + L C    + VRF      ++
Sbjct: 640  ETLGNILSAAFSPEGQLLATCDTD--CHVRVWEVKSGKLLLICRGHSNWVRF------VV 691

Query: 101  FSPNGKYIA-VGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVG 159
            FSP+G+ +A  G  + V++W        V     I+TL     +V ++ + PD   L   
Sbjct: 692  FSPDGEILASCGADENVKLW-------SVRDGVCIKTLTGHEHEVFSVAFHPDGETLASA 744

Query: 160  SKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMF 219
            S D  ++L+ +++    + T     L GH D V    FS D      N + + A D  + 
Sbjct: 745  SGDKTIKLWDIQDG-TCLQT-----LTGHTDWVRCVAFSPDG-----NTLASSAADHTIK 793

Query: 220  SWGFSGNDGKIDETME-------------DSEPPSPGTPERRVKKWGLLRKD---DFSQA 263
             W  S   GK   T++             D +  + G+ +R +K W     +    +   
Sbjct: 794  LWDVS--QGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGH 851

Query: 264  PSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWL-- 321
             + V +  Y     ++V G  +    L+     +CI  L     ++ +  F+  G  L  
Sbjct: 852  TNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHICIKTLHGHTNEVCSVAFSPDGQTLAC 911

Query: 322  --------VFGCAKLGQLL--------------------------------VWEWRSESY 341
                    ++ C + GQ L                                +W+W++  Y
Sbjct: 912  VSLDQSVRLWNC-RTGQCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQTGKY 970

Query: 342  ILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMA 401
            I   +GH   +  +A+SPDSQ LA+ + D+ V++W +S+G CF    EHT+ V A+ F  
Sbjct: 971  ISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFHP 1030

Query: 402  NNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFV 461
                + + S D TV+ W++   +  +T +  S +  + +A    G+++ + + D   + +
Sbjct: 1031 QGKIIATGSADCTVKLWNISTGQCLKTLSEHSDK-ILGMAWSPDGQLLASASADQ-SVRL 1088

Query: 462  WSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHD 521
            W   TGR + IL GH   V+  +FSP    +A+ S D+TV++W+  +GK       HT+ 
Sbjct: 1089 WDCCTGRCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNW 1148

Query: 522  VLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSG 581
            V  + + PDG+ LA ++ D  +  WD   G+  +   G   +                  
Sbjct: 1149 VFDIAFSPDGKILASASHDQTVRIWDVNTGKCHHICIGHTHL------------------ 1190

Query: 582  KCFTTLCYSADGSYILAGGSSKYICMYDVADQ---VLLRRFQITHNLSLDGV 630
               +++ +S DG  + +G   + + +++V       +LR  ++   +++ GV
Sbjct: 1191 --VSSVAFSPDGEVVASGSQDQTVRIWNVKTGECLQILRAKRLYEGMNITGV 1240

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score =  157 bits (396), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 142/570 (24%), Positives = 251/570 (44%), Gaps = 47/570 (8%)

Query: 52   SSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYP-VNAILFSPNGKYIAV 110
            +S +  +  SP+   L +   +Q     ++     L+  +     V ++ F+ +G  +A 
Sbjct: 948  TSRVRSVVFSPNSLMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDGSMLAT 1007

Query: 111  GTG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFY 169
            G+G + V++W     +     F + +    C   V ++ +S D   L  GS D  VRL+ 
Sbjct: 1008 GSGDQTVRLWDISSSQ----CFYIFQGHTSC---VRSVVFSSDGAMLASGSDDQTVRLWD 1060

Query: 170  VKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKT------DKVNRIYTIARDCYMFSWGF 223
            +         N  + L GH   V    FS D         D++ R++ I+    +++   
Sbjct: 1061 ISSG------NCLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQG 1114

Query: 224  SGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKD---DFSQAPSKVTACDYHRGLDMVV 280
              +  +      +    + G+ ++ V+ W +  K          + V A  +      + 
Sbjct: 1115 YTSWVRFLVFSPNGVTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAFSPDGATLA 1174

Query: 281  VGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES 340
             G  +    L+ +    C+++L      + + VFN  G+ L  G +    + +WE  S  
Sbjct: 1175 SGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSD-QTVRLWEINSSK 1233

Query: 341  YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFM 400
             +   QGH   VN + ++PD  +LA+G+ D  V++W +SS  C  TF  HTN V ++ F 
Sbjct: 1234 CLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFN 1293

Query: 401  ANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIF 460
             +   L S S D TVR W++   +   TF   +S    S+     G ++ +G+ D   + 
Sbjct: 1294 PDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTS-WVSSVTFSPDGTMLASGS-DDQTVR 1351

Query: 461  VWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTH 520
            +WS+ +G  L    GH   V  ++FSP  A LAS S D+TVRLW++  GK       H +
Sbjct: 1352 LWSISSGECLYTFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNN 1411

Query: 521  DVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSS 580
             V ++V+ PDG  LA  + D  +  W+  +GE +YT+ G         +   RS A    
Sbjct: 1412 WVGSIVFSPDGTLLASGSDDQTVRLWNISSGECLYTLHGH--------INSVRSVA---- 1459

Query: 581  GKCFTTLCYSADGSYILAGGSSKYICMYDV 610
                    +S+DG  + +G   + I ++DV
Sbjct: 1460 --------FSSDGLILASGSDDETIKLWDV 1481

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	860
147814937	901	hypothetical protein VITISV_033250 [Viti	1.0	0.954	0.799	0.0
317106757	892	JHL25H03.15 [Jatropha curcas]	0.997	0.961	0.812	0.0
224058701	892	predicted protein [Populus trichocarpa]	0.993	0.957	0.815	0.0
224073762	889	predicted protein [Populus trichocarpa]	0.997	0.965	0.810	0.0
255553073	895	WD-repeat protein, putative [Ricinus com	0.998	0.959	0.801	0.0
357507105	880	Periodic tryptophan protein-like protein	0.990	0.968	0.787	0.0
225442837	861	PREDICTED: periodic tryptophan protein 2	0.954	0.953	0.775	0.0
356556497	898	PREDICTED: periodic tryptophan protein 2	0.995	0.953	0.758	0.0
449469012	892	PREDICTED: periodic tryptophan protein 2	0.995	0.959	0.771	0.0
297743394	816	unnamed protein product [Vitis vinifera]	0.948	1.0	0.795	0.0

>gi|147814937|emb|CAN74744.1| hypothetical protein VITISV_033250 [Vitis vinifera]

 Score = 1498 bits (3879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 720/901 (79%), Positives = 796/901 (88%), Gaps = 41/901 (4%)

Query: 1   MNYRFQNLLGAPYRGGNAVLSQNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAV 60
           MN+RFQNLLGAPYRGGN V+S NT LIS VGNR+SVTDL+KS+T TLP +SSSNI RIAV
Sbjct: 1   MNFRFQNLLGAPYRGGNVVVSNNTLLISSVGNRISVTDLLKSQTQTLPTQSSSNIARIAV 60

Query: 61  SPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWR 120
           SPDG FLL VD+  RC FINL   +VLHR+ FK PV+AI FSP+   IAV TGKL+QIWR
Sbjct: 61  SPDGNFLLAVDDRNRCLFINLPRRIVLHRISFKKPVSAIRFSPDAALIAVATGKLLQIWR 120

Query: 121 SPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHT- 179
           SPGFKK+ FAFEL+RT ADC+DKVTAL+WSPDSNY+L GSKDL VRLF +K+  K +   
Sbjct: 121 SPGFKKDFFAFELVRTFADCDDKVTALDWSPDSNYVLAGSKDLTVRLFCLKKFDKELTAL 180

Query: 180 NKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETM-EDSE 238
           NKPFL LGHRDS+VG FF VD KT++V + YTI RDCY+FSWG+S N+GK++E   EDSE
Sbjct: 181 NKPFLFLGHRDSIVGAFFGVDNKTNRVCKAYTITRDCYIFSWGYSDNEGKVEELGGEDSE 240

Query: 239 PPSPGTPER----------------RVKK-----------------------WGLLRKDD 259
           PPSPGTPE+                RVKK                       W LLRKD+
Sbjct: 241 PPSPGTPEKGSDRDGKGGLEANVGMRVKKRKGFDDIGGDLVEECGNLLHKGKWELLRKDN 300

Query: 260 FSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGN 319
           FSQAP+K+T CDYHRGLD+VVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFN+LGN
Sbjct: 301 FSQAPAKLTTCDYHRGLDLVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNDLGN 360

Query: 320 WLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVS 379
           WL FGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVS
Sbjct: 361 WLTFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVS 420

Query: 380 SGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVS 439
           SGFCFVTF+EHTNAVTALHFM+NN+ LLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVS
Sbjct: 421 SGFCFVTFSEHTNAVTALHFMSNNNCLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVS 480

Query: 440 LASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDK 499
           LASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGL+FSPTNA LASSSWDK
Sbjct: 481 LASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLMFSPTNAILASSSWDK 540

Query: 500 TVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEG 559
           TVRLW+VFEGKG+VE+F HTHDVLTVVYRPDG+QLACSTLDGQIHFWDP++G LMYTIEG
Sbjct: 541 TVRLWDVFEGKGAVETFNHTHDVLTVVYRPDGKQLACSTLDGQIHFWDPIDGLLMYTIEG 600

Query: 560 RRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRF 619
           RRDI+GGRLMTDRRSAANSSSGKCFT+LCYSADGSYILAGGSSK+ICMYD+ADQVLLRRF
Sbjct: 601 RRDIAGGRLMTDRRSAANSSSGKCFTSLCYSADGSYILAGGSSKFICMYDIADQVLLRRF 660

Query: 620 QITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRG 679
           QITHNLSLDGV+D LNSKNMTEAGP+DLIDDDNSD EEG++KQTRGKL YDLPG++PN G
Sbjct: 661 QITHNLSLDGVLDVLNSKNMTEAGPLDLIDDDNSDVEEGIDKQTRGKLGYDLPGSMPNHG 720

Query: 680 RPTIQTKCLKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQP 739
           RP I+TKCL+IAPTGR + AATTEGVLVYS+DESFIFDPTDLDIDVTPEAVDAAL+E QP
Sbjct: 721 RPVIRTKCLRIAPTGRGWAAATTEGVLVYSMDESFIFDPTDLDIDVTPEAVDAALSEGQP 780

Query: 740 KRALILSLRLNEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLLESCPHLEFM 799
            RALILSLRLNED+LIKKCIFA+SPVDIPAVASS+P RY+QRLIEA +DLLESCP+LEF+
Sbjct: 781 SRALILSLRLNEDSLIKKCIFAVSPVDIPAVASSVPLRYLQRLIEAFADLLESCPYLEFI 840

Query: 800 LRWCQELCKTHGNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSVGAK 859
           LRWCQELCK HG++IQQNSRNLLPSLKSLQK++ R+HQDLAD+CSSNEY+L+YLC+ G K
Sbjct: 841 LRWCQELCKAHGHSIQQNSRNLLPSLKSLQKAMARLHQDLADSCSSNEYLLRYLCTTGTK 900

Query: 860 K 860
           K
Sbjct: 901 K 901

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106757|dbj|BAJ53251.1| JHL25H03.15 [Jatropha curcas]

 Score = 1491 bits (3859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 726/894 (81%), Positives = 795/894 (88%), Gaps = 36/894 (4%)

Query: 1   MNYRFQNLLGAPYRGGNAVLSQNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAV 60
           MNYRFQNLLGAPYRGGNAV++QNT+LISPVGNRVS+TDL+KS+T+TLPV+SSSNI R+AV
Sbjct: 1   MNYRFQNLLGAPYRGGNAVITQNTQLISPVGNRVSITDLVKSQTITLPVQSSSNIRRLAV 60

Query: 61  SPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWR 120
           SPDGTFLLTVDEN RCHFIN+    VLHR+ FK  VNA+ FSP+GKYIAV  GKLVQIWR
Sbjct: 61  SPDGTFLLTVDENNRCHFINIPRRAVLHRITFKKTVNALRFSPDGKYIAVAAGKLVQIWR 120

Query: 121 SPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTN 180
           SPGFK+E FAFEL+RTLADC D VTAL+WS D  YLLVGSKDL  RLF VK KL+GI  N
Sbjct: 121 SPGFKREYFAFELVRTLADCEDTVTALDWSLDCKYLLVGSKDLTARLFCVK-KLQGI-LN 178

Query: 181 KPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETME-DSEP 239
           KPFL LGHRD+VVGCFF  DKKT+ VN+IYTIARD Y+FSW +SG DGK++E  E DS+P
Sbjct: 179 KPFLFLGHRDAVVGCFFGYDKKTNNVNKIYTIARDGYIFSWSYSGTDGKLNEDDEQDSKP 238

Query: 240 PSPGTPER---------------------------------RVKKWGLLRKDDFSQAPSK 266
            S GTPE+                                    KW LLRKD F Q+ +K
Sbjct: 239 SSSGTPEQDGERNLDGANGIDVKKRKEFEGKDANSDLNSYLHKGKWELLRKDGFMQSQTK 298

Query: 267 VTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCA 326
           +TACDYHR LDMVVVGFSNGVFGLYQMPDF+CIHL+SISREKITTAVFNE GNWL FGCA
Sbjct: 299 LTACDYHRLLDMVVVGFSNGVFGLYQMPDFICIHLMSISREKITTAVFNETGNWLTFGCA 358

Query: 327 KLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVT 386
           KLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVT
Sbjct: 359 KLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVT 418

Query: 387 FTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSG 446
           F+EHTNAVTAL FMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLA+DQSG
Sbjct: 419 FSEHTNAVTALQFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLAADQSG 478

Query: 447 EVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNV 506
           EVICAGTLDSFEIFVWSMKTGRLLD+LSGHEGPVHGL FSPTNA LASSSWDKTVRLW+V
Sbjct: 479 EVICAGTLDSFEIFVWSMKTGRLLDVLSGHEGPVHGLTFSPTNAILASSSWDKTVRLWDV 538

Query: 507 FEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGG 566
           FEGKG+VE+F HTHDVLTVVYRPDGRQLACSTLDGQIHFWDP+NG LM+TIEGRRDI+GG
Sbjct: 539 FEGKGAVETFTHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPINGLLMFTIEGRRDIAGG 598

Query: 567 RLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLS 626
           RLMTDRRSAANS++GKCFTTLCYSADGSYILAGGSSKYICMYD+ADQVLLRRFQITHNLS
Sbjct: 599 RLMTDRRSAANSTAGKCFTTLCYSADGSYILAGGSSKYICMYDIADQVLLRRFQITHNLS 658

Query: 627 LDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTK 686
           LDGV+DFLNSK MT+AGP+DLIDDD++DTEEGV+KQ RGKL YDLPG++PN GRP I+TK
Sbjct: 659 LDGVLDFLNSKKMTDAGPLDLIDDDDTDTEEGVDKQVRGKLGYDLPGSMPNHGRPIIRTK 718

Query: 687 CLKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPKRALILS 746
           CL+IAPTGR+F +ATTEGVLVYSIDESFIFDPTDLDIDVTPEAVD AL+EDQP RALILS
Sbjct: 719 CLRIAPTGRSFSSATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDEALDEDQPNRALILS 778

Query: 747 LRLNEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLLESCPHLEFMLRWCQEL 806
           LRLNED+LIKKCIFA++P+DIPAVA+SIP+RY+QRLIEAL+DLLE CPHLEF+LRW QEL
Sbjct: 779 LRLNEDSLIKKCIFAVNPIDIPAVAASIPFRYLQRLIEALADLLEGCPHLEFILRWSQEL 838

Query: 807 CKTHGNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSVGAKK 860
           CK HGN+IQQNSRNLLPSLKSLQK+IT IHQDLADTCSSNEYML+YLC  G+ K
Sbjct: 839 CKAHGNSIQQNSRNLLPSLKSLQKAITGIHQDLADTCSSNEYMLRYLCCTGSNK 892

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058701|ref|XP_002299610.1| predicted protein [Populus trichocarpa] gi|222846868|gb|EEE84415.1| predicted protein [Populus trichocarpa]

 Score = 1490 bits (3857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 725/889 (81%), Positives = 794/889 (89%), Gaps = 35/889 (3%)

Query: 1   MNYRFQNLLGAPYRGGNAVLSQNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAV 60
           MNYRF NLLGAPYRGGN V++QNT+LISPVGNRVS+TDL+KS+T+TLP++SSSNI RIA 
Sbjct: 1   MNYRFHNLLGAPYRGGNVVITQNTQLISPVGNRVSITDLLKSQTITLPLQSSSNIRRIAA 60

Query: 61  SPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWR 120
           SPDGTFLLTVDEN RCHFIN+   V+LHR+ FK  VNA+ FSP+GK+IAV  GKLVQIWR
Sbjct: 61  SPDGTFLLTVDENHRCHFINIPRRVILHRINFKNAVNALKFSPDGKFIAVAAGKLVQIWR 120

Query: 121 SPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTN 180
           SPGFKKE FAFEL+RT+ADC D VTA++WS D  YLLVGSKDL  RLF V EKLK    N
Sbjct: 121 SPGFKKEFFAFELVRTIADCEDTVTAIDWSLDCKYLLVGSKDLVARLFCV-EKLKDGILN 179

Query: 181 KPFLLLGHRDSVVGCFFSVDKK-TDKVNRIYTIARDCYMFSWGFSGN-DGKIDETME-DS 237
           KPFL LGHRD+VVGCFF  DKK TD+VN++YTI RDCY+FSWG+SGN DG  DE  E +S
Sbjct: 180 KPFLFLGHRDNVVGCFFGYDKKNTDQVNKVYTITRDCYIFSWGYSGNNDGNFDENDEGNS 239

Query: 238 EPPSPGTPER-------------------------------RVKKWGLLRKDDFSQAPSK 266
           EP SPGTP+R                                 +KW LLRKD F Q+P+K
Sbjct: 240 EPASPGTPKRNGEGNVNGESLGNVKKRKDFDGKDLGEEGYLHKRKWELLRKDGFMQSPAK 299

Query: 267 VTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCA 326
           +TAC YHRGLDMVVVGFSNGVFGLYQMPDFVC+HLLSISREKIT AVFNE GNWLVFGCA
Sbjct: 300 LTACTYHRGLDMVVVGFSNGVFGLYQMPDFVCMHLLSISREKITAAVFNESGNWLVFGCA 359

Query: 327 KLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVT 386
           KLGQLLVWEWRSESY+LKQQGHYFDVNCL YSPDSQLLATGADDNKVKVWTVSSGFCFVT
Sbjct: 360 KLGQLLVWEWRSESYVLKQQGHYFDVNCLTYSPDSQLLATGADDNKVKVWTVSSGFCFVT 419

Query: 387 FTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSG 446
           F+EHTNAVT+LHFMANNH LLSASLDGTVRAWDL+RYRNFRTFTTPSSRQFVSLA+DQSG
Sbjct: 420 FSEHTNAVTSLHFMANNHCLLSASLDGTVRAWDLYRYRNFRTFTTPSSRQFVSLAADQSG 479

Query: 447 EVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNV 506
           EVICAGTLDSFEIFVWSMKTGRLLDILSGH GPVHGL+FSPTNA L SSSWDKTVRLW+V
Sbjct: 480 EVICAGTLDSFEIFVWSMKTGRLLDILSGHGGPVHGLIFSPTNAVLTSSSWDKTVRLWDV 539

Query: 507 FEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGG 566
           FEGKG+VE+F HTHDVLTVVYRPDGRQLACSTLDGQIHFWDP++G LMYTIEGRRDI+GG
Sbjct: 540 FEGKGAVETFSHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPIDGLLMYTIEGRRDIAGG 599

Query: 567 RLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLS 626
           RLMTDRRSAANS++GKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLS
Sbjct: 600 RLMTDRRSAANSTAGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLS 659

Query: 627 LDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTK 686
           LDGV+DFLNSK MT+AGP+DLIDDD+SDTEEGV+KQTRGKL YDLPG++PNRGRP I+TK
Sbjct: 660 LDGVLDFLNSKKMTDAGPLDLIDDDDSDTEEGVDKQTRGKLGYDLPGSMPNRGRPIIRTK 719

Query: 687 CLKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPKRALILS 746
           CL+IAPTGR+F AATTEGVLVYSIDESFIFDPTDLDIDVTPEAV+ AL+EDQP RALILS
Sbjct: 720 CLRIAPTGRSFAAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVEDALDEDQPNRALILS 779

Query: 747 LRLNEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLLESCPHLEFMLRWCQEL 806
           LRLNED+LIKKCIF++SP+DIPAVASS+PYRY+QRLIEA SDLLESCPHLEF+LRWCQEL
Sbjct: 780 LRLNEDSLIKKCIFSVSPLDIPAVASSVPYRYLQRLIEAFSDLLESCPHLEFILRWCQEL 839

Query: 807 CKTHGNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCS 855
           CK HGN+IQQNSRNLLP+LKSLQK+IT IHQDLADTCSSNEYML+YLCS
Sbjct: 840 CKAHGNSIQQNSRNLLPALKSLQKAITGIHQDLADTCSSNEYMLRYLCS 888

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073762|ref|XP_002304160.1| predicted protein [Populus trichocarpa] gi|222841592|gb|EEE79139.1| predicted protein [Populus trichocarpa]

 Score = 1487 bits (3850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 721/890 (81%), Positives = 794/890 (89%), Gaps = 32/890 (3%)

Query: 1   MNYRFQNLLGAPYRGGNAVLSQNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAV 60
           MNYRFQNLLGAPYRGGN V++QNT+LISPVGNRVS+TDLIKS+T+TLP++SSSNI RIA 
Sbjct: 1   MNYRFQNLLGAPYRGGNVVITQNTQLISPVGNRVSITDLIKSQTITLPLQSSSNIRRIAA 60

Query: 61  SPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWR 120
           SPDGTFLLTVDEN RCHFIN    V+LHR+ FK  VNA+ FSP+GK+IAV  GKLVQ+WR
Sbjct: 61  SPDGTFLLTVDENHRCHFINTARRVILHRINFKNTVNAVKFSPDGKFIAVAAGKLVQLWR 120

Query: 121 SPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTN 180
           SPGFKK+ FAFEL+RT+ADC D VTA++WS D  YLLVGSKDL+ RLF V EKLK    N
Sbjct: 121 SPGFKKDFFAFELVRTIADCEDTVTAIDWSLDCKYLLVGSKDLSARLFCV-EKLKDGILN 179

Query: 181 KPFLLLGHRDSVVGCFFSVDKK-TDKVNRIYTIARDCYMFSWGFSGN-DGKIDETMED-S 237
           KPFL LGHRD+VVGCFF  DKK T+KV+++YTI RDCY+FSWG+SGN DG  DE     S
Sbjct: 180 KPFLFLGHRDNVVGCFFGYDKKNTNKVSKVYTITRDCYIFSWGYSGNNDGNFDENDGGIS 239

Query: 238 EPPSPGTPER----------------------------RVKKWGLLRKDDFSQAPSKVTA 269
           EP  PGTPER                              +KW LLRKD F Q+P+K+TA
Sbjct: 240 EPAFPGTPERDGEGNMDSGSVGTVKKRKDFDGKDEGYLHKEKWELLRKDGFMQSPAKLTA 299

Query: 270 CDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLG 329
           CDYHRGLDMVVVGFSNGVFGLYQMPDFVC+HLLSISREKIT AVFNE+GNWL FGCAKLG
Sbjct: 300 CDYHRGLDMVVVGFSNGVFGLYQMPDFVCMHLLSISREKITAAVFNEIGNWLTFGCAKLG 359

Query: 330 QLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTE 389
           QLLVWEWRSESY+LKQQGHYFDVNCL YSPDSQLLATGADDNKVKVWTVSSGFCFVTF+E
Sbjct: 360 QLLVWEWRSESYVLKQQGHYFDVNCLTYSPDSQLLATGADDNKVKVWTVSSGFCFVTFSE 419

Query: 390 HTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVI 449
           HTNAVTALHFMANNH LLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLA+DQSGEVI
Sbjct: 420 HTNAVTALHFMANNHCLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLAADQSGEVI 479

Query: 450 CAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEG 509
           CAGTLDSFEIFVWSMKTGRLLD+LSGH GPVHGL FSP+NA LASSSWDKTVRLW+VFEG
Sbjct: 480 CAGTLDSFEIFVWSMKTGRLLDVLSGHAGPVHGLTFSPSNAVLASSSWDKTVRLWDVFEG 539

Query: 510 KGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLM 569
           KG+VE+FPHTHDVLTVVYRPDGRQLACSTLDGQIHFWD ++G LMYTIEGRRDI+GGRLM
Sbjct: 540 KGAVETFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDTIDGLLMYTIEGRRDIAGGRLM 599

Query: 570 TDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDG 629
           TDRRSAANS++GKCFTTLCYSADGSYILAGGSSK+ICMYDVADQVLLRRFQITHNLSLDG
Sbjct: 600 TDRRSAANSTAGKCFTTLCYSADGSYILAGGSSKFICMYDVADQVLLRRFQITHNLSLDG 659

Query: 630 VIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLK 689
           V+DFLNSK MT+AGP+DLIDDD+SD EEGV+KQTRGKL YDLPG++PNRGRP I+TKCL+
Sbjct: 660 VLDFLNSKKMTDAGPLDLIDDDDSDAEEGVDKQTRGKLGYDLPGSMPNRGRPIIRTKCLR 719

Query: 690 IAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPKRALILSLRL 749
           IAPTGR+F AATTEGVLVYSIDESFIFDPTDLD+DVTPEAV+ AL+EDQP RALI+SLRL
Sbjct: 720 IAPTGRSFAAATTEGVLVYSIDESFIFDPTDLDMDVTPEAVEEALDEDQPNRALIISLRL 779

Query: 750 NEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLLESCPHLEFMLRWCQELCKT 809
           NED+LIKKCIF++SP+DIPA+ASS+PYRY+QRLIEA SDLLESCPHLEF+LRWCQELCK 
Sbjct: 780 NEDSLIKKCIFSVSPLDIPAIASSVPYRYLQRLIEAFSDLLESCPHLEFILRWCQELCKA 839

Query: 810 HGNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSVGAK 859
           HGN+IQQNSRNLLP+LKSLQK+ITRIHQDLADTCSSNEYML+YLCS   K
Sbjct: 840 HGNSIQQNSRNLLPALKSLQKAITRIHQDLADTCSSNEYMLRYLCSSNNK 889

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553073|ref|XP_002517579.1| WD-repeat protein, putative [Ricinus communis] gi|223543211|gb|EEF44743.1| WD-repeat protein, putative [Ricinus communis]

 Score = 1465 bits (3792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 718/896 (80%), Positives = 787/896 (87%), Gaps = 37/896 (4%)

Query: 1   MNYRFQNLLGAPYRGGNAVLSQNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAV 60
           MNYRFQNLLGAPYRGGNAV++QNT+LISPVGNRVS+TDLIKS+T+TLP++SSSNI RIA 
Sbjct: 1   MNYRFQNLLGAPYRGGNAVITQNTQLISPVGNRVSITDLIKSQTITLPLQSSSNIRRIAA 60

Query: 61  SPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWR 120
           SPDGTFL+T+DEN RC FIN+   VVLHR+ FK PV+++ FSPNGK IAV TGKLVQIWR
Sbjct: 61  SPDGTFLITIDENNRCQFINIPRRVVLHRISFKKPVSSVRFSPNGKLIAVATGKLVQIWR 120

Query: 121 SPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTN 180
           SPGFKKE FAFEL+RTLADC D VTA++WS DS YLLVGSKDL  R F V E+L     N
Sbjct: 121 SPGFKKEFFAFELVRTLADCEDTVTAIDWSLDSKYLLVGSKDLTARHFCV-ERLNNGLLN 179

Query: 181 KPFLLLGHRDSVVGCFFSVDKK-TDKVNRIYTIARDCYMFSWGFSGNDGKID--ETMEDS 237
           KPFL LGHRD+VVGCFF  DKK +DK+ R YTIARD Y+FSW +  N+GK D  +  ED 
Sbjct: 180 KPFLFLGHRDAVVGCFFGYDKKISDKIIRAYTIARDGYVFSWSYKDNNGKFDKEDDGEDL 239

Query: 238 EPPSPGT------------PERRVKK---------------------WGLLRKDDFSQAP 264
           EP SPGT             ER VKK                     WGL+RKD F Q+P
Sbjct: 240 EPLSPGTQEKDGEGNVDGGSERNVKKRKGFDGNDGEQEGEGFLHKGKWGLVRKDGFMQSP 299

Query: 265 SKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFG 324
           +KVTACDYHR LDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNE GNWL FG
Sbjct: 300 AKVTACDYHRLLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNETGNWLTFG 359

Query: 325 CAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCF 384
           CAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWT SSGFCF
Sbjct: 360 CAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTASSGFCF 419

Query: 385 VTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQ 444
           +TF+EHTNAVTALHF+ANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLA+DQ
Sbjct: 420 LTFSEHTNAVTALHFIANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLAADQ 479

Query: 445 SGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLW 504
           SGEVICAGTLDSFEIFVWSMKTGRLLD+LSGHEGPVHGL FSPTNA LASSSWDKTVRLW
Sbjct: 480 SGEVICAGTLDSFEIFVWSMKTGRLLDVLSGHEGPVHGLTFSPTNALLASSSWDKTVRLW 539

Query: 505 NVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDIS 564
           +VFEGKG+VE F HTHDVLTVVYRPDG+QLACSTLDGQIHFWDP++G LMYTIEGRRDI+
Sbjct: 540 DVFEGKGAVEPFIHTHDVLTVVYRPDGKQLACSTLDGQIHFWDPVDGLLMYTIEGRRDIA 599

Query: 565 GGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHN 624
           GGRLMTDRRSAANS++GK FTTLCYSADGS ILAGGSSKYICMYDVADQVLLRRFQIT N
Sbjct: 600 GGRLMTDRRSAANSTTGKYFTTLCYSADGSCILAGGSSKYICMYDVADQVLLRRFQITQN 659

Query: 625 LSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQ 684
           LSLDGV+DFLNSK MT+AGP+DLIDDD+SDTEEG++KQ R KL YDLPG++PNRGRP I+
Sbjct: 660 LSLDGVLDFLNSKKMTDAGPLDLIDDDDSDTEEGIDKQVRAKLGYDLPGSMPNRGRPIIR 719

Query: 685 TKCLKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPKRALI 744
           TKCL+IAPTGR+F AATTEGVLVYS+DES IFDPTDLDIDVTPEAVD ALNEDQ  RALI
Sbjct: 720 TKCLRIAPTGRSFAAATTEGVLVYSVDESLIFDPTDLDIDVTPEAVDEALNEDQSYRALI 779

Query: 745 LSLRLNEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLLESCPHLEFMLRWCQ 804
           LSLRLNED+LIKKCIF+++P++I A+AS IPYRY+QRLIEAL+DLLESCPHLEF+LRWCQ
Sbjct: 780 LSLRLNEDSLIKKCIFSVNPLEISAIASLIPYRYLQRLIEALADLLESCPHLEFILRWCQ 839

Query: 805 ELCKTHGNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSVGAKK 860
           ELCK HGN+IQQNSRNLLPSLKSLQK+ITRIHQDLADTCSSNEYML+YLC+  + K
Sbjct: 840 ELCKAHGNSIQQNSRNLLPSLKSLQKAITRIHQDLADTCSSNEYMLRYLCTASSNK 895

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507105|ref|XP_003623841.1| Periodic tryptophan protein-like protein [Medicago truncatula] gi|124360858|gb|ABN08830.1| Periodic tryptophan protein-associated region; WD40-like [Medicago truncatula] gi|355498856|gb|AES80059.1| Periodic tryptophan protein-like protein [Medicago truncatula]

 Score = 1455 bits (3766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 699/888 (78%), Positives = 772/888 (86%), Gaps = 36/888 (4%)

Query: 1   MNYRFQNLLGAPYRGGNAVLSQNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAV 60
           MN+RFQNLLGAPYRGGNAV+S NT L+SPVGNRVSVTDL KS+T TLP++SSSNI RIAV
Sbjct: 1   MNFRFQNLLGAPYRGGNAVISNNTLLLSPVGNRVSVTDLRKSQTTTLPIQSSSNISRIAV 60

Query: 61  SPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWR 120
           SPDGTFLL +DEN RC FINL    +LHR+ FK+ V A+ FSP+GK IAV  GKLVQIWR
Sbjct: 61  SPDGTFLLAIDENNRCLFINLRRRALLHRITFKHRVGAVKFSPDGKLIAVAAGKLVQIWR 120

Query: 121 SPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTN 180
           SP F+KE F FELIRT AD + KVTA +WS DSNYLLV SKDL  R+  +K+   G+   
Sbjct: 121 SPAFRKEYFPFELIRTFADFHAKVTAFDWSSDSNYLLVASKDLTARILCLKKVYGGVKY- 179

Query: 181 KPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPP 240
           KPFL LGHRDSVVG FF VD KT KV+++YT+ RDCY+ SWGF+       E  E SEPP
Sbjct: 180 KPFLFLGHRDSVVGSFFGVDSKTSKVSKVYTVTRDCYILSWGFT-------EDEELSEPP 232

Query: 241 SPGTPERRVK----------------------------KWGLLRKDDFSQAPSKVTACDY 272
           SPGTP+R V+                            KW LLRKD F+QAP+KV+ACDY
Sbjct: 233 SPGTPDRDVEGDLMVEDDGDVKKRKEREFEDGGYLCKGKWELLRKDCFNQAPAKVSACDY 292

Query: 273 HRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLL 332
           HRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSIS+ KITTA+FN+LGNWL FGCAKLGQLL
Sbjct: 293 HRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISKAKITTAMFNDLGNWLSFGCAKLGQLL 352

Query: 333 VWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTN 392
           VWEWRSESYILKQQGHYFDVNC+AYS DSQLLATGADDNKVKVWTVSSGFCFVTF+EHTN
Sbjct: 353 VWEWRSESYILKQQGHYFDVNCVAYSQDSQLLATGADDNKVKVWTVSSGFCFVTFSEHTN 412

Query: 393 AVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAG 452
           AVTALHFMA+N+ LLSASLDGT+RAWDL RYRNFRTFTTPSSRQFVSLA+DQSGEVICAG
Sbjct: 413 AVTALHFMASNNCLLSASLDGTIRAWDLVRYRNFRTFTTPSSRQFVSLAADQSGEVICAG 472

Query: 453 TLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGS 512
           T DSFEIFVWSM+TGRLLD+LSGHE PVHGLVFSPTNA LASSSWDKTVRLW+VF+GKG+
Sbjct: 473 TSDSFEIFVWSMRTGRLLDVLSGHEAPVHGLVFSPTNAVLASSSWDKTVRLWDVFDGKGA 532

Query: 513 VESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDR 572
           VE++PHTHDVLTVV+RPDG+QLACSTLDGQI+FWDP++G LMYTIEG RDI+GGRLMTDR
Sbjct: 533 VETWPHTHDVLTVVFRPDGKQLACSTLDGQIYFWDPVDGLLMYTIEGSRDIAGGRLMTDR 592

Query: 573 RSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVID 632
           R+AANSS+GKCFTTLCYSADGSYILAGGSS+YICMYDVADQVLLRRFQITHNLSLDGV+D
Sbjct: 593 RTAANSSTGKCFTTLCYSADGSYILAGGSSRYICMYDVADQVLLRRFQITHNLSLDGVLD 652

Query: 633 FLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAP 692
           FLNSKNMTEAGP+DLIDD NSD EEGVE QTRGKL  DLPG++ NRGRP IQTKCL+IAP
Sbjct: 653 FLNSKNMTEAGPLDLIDDYNSDVEEGVETQTRGKLGLDLPGSVSNRGRPIIQTKCLRIAP 712

Query: 693 TGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPKRALILSLRLNED 752
           TGR+FVAATTEGVLVYS+DESFIFDPTDLDIDVTPEAVD ALNE+QP RALILSLRLNED
Sbjct: 713 TGRSFVAATTEGVLVYSVDESFIFDPTDLDIDVTPEAVDKALNENQPSRALILSLRLNED 772

Query: 753 NLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLLESCPHLEFMLRWCQELCKTHGN 812
           + IKKCIF +SP DIPAVA+SIPY+Y+QRLIEAL+ LLE+CPHLEF+LRW QELCK H N
Sbjct: 773 SFIKKCIFTVSPADIPAVATSIPYKYLQRLIEALASLLENCPHLEFILRWSQELCKAHAN 832

Query: 813 TIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSVGAKK 860
           +IQQNSRNLLPSLKSLQKSIT IHQDLADTCSSNEYML+YLCS  A K
Sbjct: 833 SIQQNSRNLLPSLKSLQKSITSIHQDLADTCSSNEYMLRYLCSSSASK 880

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442837|ref|XP_002285339.1| PREDICTED: periodic tryptophan protein 2 homolog [Vitis vinifera]

 Score = 1439 bits (3726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 698/900 (77%), Positives = 766/900 (85%), Gaps = 79/900 (8%)

Query: 1   MNYRFQNLLGAPYRGGNAVLSQNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAV 60
           MN+RFQNLLGAPYRGGN V+S NT LIS VGNR+SVTDL+KS+T TLP +SSSNI RIAV
Sbjct: 1   MNFRFQNLLGAPYRGGNVVVSNNTLLISSVGNRISVTDLLKSQTQTLPTQSSSNIARIAV 60

Query: 61  SPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWR 120
           SPDG FLL VD+  RC FINL   +VLHR+ FK PV+AI FSP+   IAV TGKL+QIWR
Sbjct: 61  SPDGNFLLAVDDRNRCLFINLPRRIVLHRISFKKPVSAIRFSPDAALIAVATGKLLQIWR 120

Query: 121 SPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTN 180
           SPGFKK+ FAFEL+RT ADC+DKVTAL+WSPDSNY+L GSKDL VR              
Sbjct: 121 SPGFKKDFFAFELVRTFADCDDKVTALDWSPDSNYVLAGSKDLTVR-------------- 166

Query: 181 KPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETM-EDSEP 239
                                    V + YTI RDCY+FSWG+S N+GK++E   EDSEP
Sbjct: 167 -------------------------VCKAYTITRDCYIFSWGYSDNEGKVEELGGEDSEP 201

Query: 240 PSPGTPER----------------RVKK-----------------------WGLLRKDDF 260
           PSPGTPE+                RVKK                       W LLRKD+F
Sbjct: 202 PSPGTPEKGSDRDGKGGLEANVGMRVKKRKGFDDIGGDLVEECGNLLHKGKWELLRKDNF 261

Query: 261 SQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNW 320
           SQAP+K+T CDYHRGLD+VVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFN+LGNW
Sbjct: 262 SQAPAKLTTCDYHRGLDLVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNDLGNW 321

Query: 321 LVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS 380
           L FGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS
Sbjct: 322 LTFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS 381

Query: 381 GFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSL 440
           GFCFVTF+EHTNAVTALHFM+NN+ LLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSL
Sbjct: 382 GFCFVTFSEHTNAVTALHFMSNNNCLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSL 441

Query: 441 ASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKT 500
           ASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGL+FSPTNA LASSSWDKT
Sbjct: 442 ASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLMFSPTNAILASSSWDKT 501

Query: 501 VRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGR 560
           VRLW+VFEGKG+VE+F HTHDVLTVVYRPDG+QLACSTLDGQIHFWDP++G LMYTIEGR
Sbjct: 502 VRLWDVFEGKGAVETFNHTHDVLTVVYRPDGKQLACSTLDGQIHFWDPIDGLLMYTIEGR 561

Query: 561 RDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQ 620
           RDI+GGRLMTDRRSAANSSSGKCFT+LCYSADGSYILAGGSSK+ICMYD+ADQVLLRRFQ
Sbjct: 562 RDIAGGRLMTDRRSAANSSSGKCFTSLCYSADGSYILAGGSSKFICMYDIADQVLLRRFQ 621

Query: 621 ITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGR 680
           ITHNLSLDGV+D LNSKNMTEAGP+DLIDDDNSD EEG++KQTRGKL YDLPG++PN GR
Sbjct: 622 ITHNLSLDGVLDVLNSKNMTEAGPLDLIDDDNSDVEEGIDKQTRGKLGYDLPGSMPNHGR 681

Query: 681 PTIQTKCLKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPK 740
           P I+TKCL+IAPTGR + AATTEGVLVYS+DESFIFDPTDLDIDVTPEAVDAAL+E QP 
Sbjct: 682 PVIRTKCLRIAPTGRGWAAATTEGVLVYSMDESFIFDPTDLDIDVTPEAVDAALSEGQPS 741

Query: 741 RALILSLRLNEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLLESCPHLEFML 800
           RALILSLRLNED LIKKCIFA+SPVDIPAVASS+P RY+QRLIEA +DLLESCP+LEF+L
Sbjct: 742 RALILSLRLNEDTLIKKCIFAVSPVDIPAVASSVPLRYLQRLIEAFADLLESCPYLEFIL 801

Query: 801 RWCQELCKTHGNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSVGAKK 860
           RWCQELCK HG++IQQNSRNLLPSLKSLQK++ R+HQDLADTCSSNEY+L+YLC+ G KK
Sbjct: 802 RWCQELCKAHGHSIQQNSRNLLPSLKSLQKAMARLHQDLADTCSSNEYLLRYLCTTGTKK 861

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556497|ref|XP_003546561.1| PREDICTED: periodic tryptophan protein 2-like [Glycine max]

 Score = 1434 bits (3713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 684/902 (75%), Positives = 765/902 (84%), Gaps = 46/902 (5%)

Query: 1   MNYRFQNLLGAPYRGGNAVLSQNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAV 60
           MN+RFQNLLGAPYRGGN V+S NT L+SPVGNRV+VTDL+KS+T TLP++SSSN+ RIAV
Sbjct: 1   MNFRFQNLLGAPYRGGNVVISSNTVLLSPVGNRVAVTDLLKSETTTLPIQSSSNVTRIAV 60

Query: 61  SPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWR 120
           S D TFLL VD+  RC FINL    +LHR+ FK+ V A  FSP G  IAV  GKLVQIWR
Sbjct: 61  SADATFLLAVDDRNRCLFINLRRRALLHRITFKHRVTAAKFSPEGSLIAVAAGKLVQIWR 120

Query: 121 SPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTN 180
           SP F++E F FEL+RT AD + KVT+L+WSPDS YL+ GSKDL  R+  +K+   G    
Sbjct: 121 SPAFRREYFPFELVRTFADFDAKVTSLDWSPDSKYLVAGSKDLTARILCLKKLNTGGVKK 180

Query: 181 KPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPP 240
           +PFLLLGHRDSV G FF V+ KT++V + YT+ RDCY+FSWGF+ +D    ++ E SEPP
Sbjct: 181 RPFLLLGHRDSVAGSFFGVNSKTNRVCKAYTVTRDCYLFSWGFTSDD----DSGEGSEPP 236

Query: 241 SPGTPERRVK------------------------------------------KWGLLRKD 258
           SPGTPER V+                                          KW LLRKD
Sbjct: 237 SPGTPERDVEENLEDSENDGVEKRKKISENGGVKKRKKTDIEDGDEGYLSRGKWELLRKD 296

Query: 259 DFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELG 318
            F Q  +KVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELG
Sbjct: 297 GFMQGSAKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELG 356

Query: 319 NWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTV 378
           NWL FGCAKLGQLLVWEWRSESYILKQQGHYFDVNC+AYSPDSQLLATGADDNKVKVWT+
Sbjct: 357 NWLTFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCVAYSPDSQLLATGADDNKVKVWTL 416

Query: 379 SSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFV 438
           SSGFCFVTF+EHTNA+TALHF+ +N+ LLSASLDGT+RAWDL RYRNF+TFTTPS RQFV
Sbjct: 417 SSGFCFVTFSEHTNAITALHFIPSNNVLLSASLDGTIRAWDLLRYRNFKTFTTPSPRQFV 476

Query: 439 SLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWD 498
           SL +D SGEVICAGT DSFE+FVWSMKTGRL+D+LSGHE PVHGLVFSPTN  LASSS+D
Sbjct: 477 SLTADISGEVICAGTSDSFEVFVWSMKTGRLMDVLSGHEAPVHGLVFSPTNTVLASSSYD 536

Query: 499 KTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIE 558
           KTVRLWNVF+GKG+VE+FPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDP++G LMYTIE
Sbjct: 537 KTVRLWNVFDGKGAVETFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPIDGLLMYTIE 596

Query: 559 GRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRR 618
           G RDI+GGRLMTDRRSAANS+SGK FTTLCYSADGSYILAGGSS+YICMYDV DQVLLRR
Sbjct: 597 GSRDIAGGRLMTDRRSAANSTSGKFFTTLCYSADGSYILAGGSSRYICMYDVTDQVLLRR 656

Query: 619 FQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNR 678
           FQITHNLSLDGV+D  NSKNMTEAGP+DLIDDDNSD EEGV+KQTRGKL  DLPG++PNR
Sbjct: 657 FQITHNLSLDGVLDIFNSKNMTEAGPLDLIDDDNSDIEEGVDKQTRGKLGLDLPGSMPNR 716

Query: 679 GRPTIQTKCLKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQ 738
           GRP IQTK L+IAPTGRNFVAATTEGVLVYS+DESFIFDPTDLDI+VTPEAV+ AL E+Q
Sbjct: 717 GRPIIQTKSLRIAPTGRNFVAATTEGVLVYSVDESFIFDPTDLDINVTPEAVEEALRENQ 776

Query: 739 PKRALILSLRLNEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLLESCPHLEF 798
           P +ALILSLRLNED+ IKKCIFA+SP DIPAVA+SIPY+Y+QRL+EAL+DLLE+CPHLEF
Sbjct: 777 PSKALILSLRLNEDSFIKKCIFAVSPGDIPAVATSIPYKYIQRLVEALADLLENCPHLEF 836

Query: 799 MLRWCQELCKTHGNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSVGA 858
            LRW QELCK HG++IQQNSRNLLPSLKSLQK+ITRIHQDLADTCSSNEYML+YLCS GA
Sbjct: 837 TLRWSQELCKAHGSSIQQNSRNLLPSLKSLQKAITRIHQDLADTCSSNEYMLRYLCSSGA 896

Query: 859 KK 860
           KK
Sbjct: 897 KK 898

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469012|ref|XP_004152215.1| PREDICTED: periodic tryptophan protein 2 homolog [Cucumis sativus] gi|449484190|ref|XP_004156811.1| PREDICTED: periodic tryptophan protein 2 homolog [Cucumis sativus]

 Score = 1424 bits (3687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 689/893 (77%), Positives = 774/893 (86%), Gaps = 37/893 (4%)

Query: 1   MNYRFQNLLGAPYRGGNAVLSQNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAV 60
           MNYRFQNLLGAPYRGGN ++S++T LISPVGNR+SVTDL+KS+T TLP++SSSNICRIA+
Sbjct: 1   MNYRFQNLLGAPYRGGNVLISEDTLLISPVGNRISVTDLVKSQTTTLPLQSSSNICRIAL 60

Query: 61  SPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWR 120
           SPDG FL TVDE  RC FINL   VVLHR+ FK PV+ + FSP+G  IAVGTGKLVQIWR
Sbjct: 61  SPDGVFLFTVDEKNRCLFINLRRRVVLHRISFKKPVSVVKFSPDGANIAVGTGKLVQIWR 120

Query: 121 SPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTN 180
           +PGF+KE F FEL+RT ADC+DKVTAL+WSPD NYLL GSKDL  RL +VK KL G+   
Sbjct: 121 APGFRKEFFPFELVRTFADCHDKVTALDWSPDGNYLLAGSKDLTARLLFVK-KLSGVKY- 178

Query: 181 KPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDET-MEDSEP 239
           KP L LGHRDS+VG +F  +KKT+KV ++YTI RDCY+FSWG   N+   DE  +++SEP
Sbjct: 179 KPQLFLGHRDSIVGSYFGTNKKTNKVEKVYTITRDCYIFSWGIIQNN--FDEMEVDNSEP 236

Query: 240 PSPGTPERRVK--------------------------------KWGLLRKDDFSQAPSKV 267
            SPGTP R  +                                KW L+RKD+FSQAP+KV
Sbjct: 237 ASPGTPRRDSEENVESGGVVSVKKRKNIGDGNVDSEDGYLLREKWQLVRKDNFSQAPAKV 296

Query: 268 TACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK 327
           TACDYHR LDMVVVGFSNGVFGLYQMPDFVC+H+LSISREKITTA+FN+ GNWL FGCAK
Sbjct: 297 TACDYHRYLDMVVVGFSNGVFGLYQMPDFVCLHMLSISREKITTAIFNQHGNWLSFGCAK 356

Query: 328 LGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTF 387
           LGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTV SGFCFVTF
Sbjct: 357 LGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVQSGFCFVTF 416

Query: 388 TEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGE 447
           +EH NAVTAL F+ANNH LLSASLDGTVRAWDLFRYRNFRTFT+P+SRQFVSLA DQSGE
Sbjct: 417 SEHANAVTALQFLANNHCLLSASLDGTVRAWDLFRYRNFRTFTSPTSRQFVSLAVDQSGE 476

Query: 448 VICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVF 507
           V+CAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGL+FSPTNA LASSSWDKTVRLW+VF
Sbjct: 477 VVCAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLMFSPTNAVLASSSWDKTVRLWDVF 536

Query: 508 EGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGR 567
           EGKG+VE+F H HDVLTVVYRPDGRQLA  TLDGQIHFWDP++G LMYTIEGRRDI+GGR
Sbjct: 537 EGKGAVETFNHMHDVLTVVYRPDGRQLASCTLDGQIHFWDPIDGILMYTIEGRRDIAGGR 596

Query: 568 LMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSL 627
           LMTDRRSAA SSSGKCFTTLCYSADGSYILAGGSSKYICMYD+ADQVLLRRFQIT+NLSL
Sbjct: 597 LMTDRRSAATSSSGKCFTTLCYSADGSYILAGGSSKYICMYDIADQVLLRRFQITNNLSL 656

Query: 628 DGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKC 687
           DGV+D LNSKNMT+AGP+DLIDDD+SD EEGV++QTR KL +DLPG+L NRGRP ++TKC
Sbjct: 657 DGVLDVLNSKNMTDAGPLDLIDDDDSDIEEGVDQQTREKLGHDLPGSLLNRGRPVVRTKC 716

Query: 688 LKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPKRALILSL 747
           L+IAPTGRNF A+TTEGVL+YSIDESFIFDPTDLDIDVTPEA++AAL+EDQ  RALILSL
Sbjct: 717 LRIAPTGRNFAASTTEGVLIYSIDESFIFDPTDLDIDVTPEAINAALDEDQSSRALILSL 776

Query: 748 RLNEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLLESCPHLEFMLRWCQELC 807
           RLNED LIKKCIF+++PVDI  +  SIP+RY+QRL+EAL++LLESCPHLEF+LRWCQELC
Sbjct: 777 RLNEDALIKKCIFSVNPVDIAKLIQSIPHRYLQRLVEALAELLESCPHLEFVLRWCQELC 836

Query: 808 KTHGNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSVGAKK 860
           K HG  IQQNSRNLLP+LKSLQ +ITR HQD+AD CSSNEY+L+YLCS  AKK
Sbjct: 837 KVHGTYIQQNSRNLLPALKSLQMAITRTHQDVADMCSSNEYLLRYLCSTSAKK 889

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743394|emb|CBI36261.3| unnamed protein product [Vitis vinifera]

 Score = 1421 bits (3678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 684/860 (79%), Positives = 751/860 (87%), Gaps = 44/860 (5%)

Query: 1   MNYRFQNLLGAPYRGGNAVLSQNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAV 60
           MN+RFQNLLGAPYRGGN V+S NT LIS VGNR+SVTDL+KS+T TLP +SSSNI RIAV
Sbjct: 1   MNFRFQNLLGAPYRGGNVVVSNNTLLISSVGNRISVTDLLKSQTQTLPTQSSSNIARIAV 60

Query: 61  SPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWR 120
           SPDG FLL VD+  RC FINL   +VLHR+ FK PV+AI FSP+   IAV TGKL+QIWR
Sbjct: 61  SPDGNFLLAVDDRNRCLFINLPRRIVLHRISFKKPVSAIRFSPDAALIAVATGKLLQIWR 120

Query: 121 SPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTN 180
           SPGFKK+ FAFEL+RT ADC+DKVTAL+WSPDSNY+L GSKDL VR              
Sbjct: 121 SPGFKKDFFAFELVRTFADCDDKVTALDWSPDSNYVLAGSKDLTVR-------------- 166

Query: 181 KPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPP 240
                                    V + YTI RDCY+FSWG+S N+GK      D +  
Sbjct: 167 -------------------------VCKAYTITRDCYIFSWGYSDNEGK----GSDRDGK 197

Query: 241 SPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIH 300
             G    +  KW LLRKD+FSQAP+K+T CDYHRGLD+VVVGFSNGVFGLYQMPDFVCIH
Sbjct: 198 ECGNLLHK-GKWELLRKDNFSQAPAKLTTCDYHRGLDLVVVGFSNGVFGLYQMPDFVCIH 256

Query: 301 LLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPD 360
           LLSISREKITTAVFN+LGNWL FGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPD
Sbjct: 257 LLSISREKITTAVFNDLGNWLTFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPD 316

Query: 361 SQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDL 420
           SQLLATGADDNKVKVWTVSSGFCFVTF+EHTNAVTALHFM+NN+ LLSASLDGTVRAWDL
Sbjct: 317 SQLLATGADDNKVKVWTVSSGFCFVTFSEHTNAVTALHFMSNNNCLLSASLDGTVRAWDL 376

Query: 421 FRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPV 480
           FRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPV
Sbjct: 377 FRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPV 436

Query: 481 HGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLD 540
           HGL+FSPTNA LASSSWDKTVRLW+VFEGKG+VE+F HTHDVLTVVYRPDG+QLACSTLD
Sbjct: 437 HGLMFSPTNAILASSSWDKTVRLWDVFEGKGAVETFNHTHDVLTVVYRPDGKQLACSTLD 496

Query: 541 GQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGG 600
           GQIHFWDP++G LMYTIEGRRDI+GGRLMTDRRSAANSSSGKCFT+LCYSADGSYILAGG
Sbjct: 497 GQIHFWDPIDGLLMYTIEGRRDIAGGRLMTDRRSAANSSSGKCFTSLCYSADGSYILAGG 556

Query: 601 SSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVE 660
           SSK+ICMYD+ADQVLLRRFQITHNLSLDGV+D LNSKNMTEAGP+DLIDDDNSD EEG++
Sbjct: 557 SSKFICMYDIADQVLLRRFQITHNLSLDGVLDVLNSKNMTEAGPLDLIDDDNSDVEEGID 616

Query: 661 KQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYSIDESFIFDPTD 720
           KQTRGKL YDLPG++PN GRP I+TKCL+IAPTGR + AATTEGVLVYS+DESFIFDPTD
Sbjct: 617 KQTRGKLGYDLPGSMPNHGRPVIRTKCLRIAPTGRGWAAATTEGVLVYSMDESFIFDPTD 676

Query: 721 LDIDVTPEAVDAALNEDQPKRALILSLRLNEDNLIKKCIFAISPVDIPAVASSIPYRYMQ 780
           LDIDVTPEAVDAAL+E QP RALILSLRLNED LIKKCIFA+SPVDIPAVASS+P RY+Q
Sbjct: 677 LDIDVTPEAVDAALSEGQPSRALILSLRLNEDTLIKKCIFAVSPVDIPAVASSVPLRYLQ 736

Query: 781 RLIEALSDLLESCPHLEFMLRWCQELCKTHGNTIQQNSRNLLPSLKSLQKSITRIHQDLA 840
           RLIEA +DLLESCP+LEF+LRWCQELCK HG++IQQNSRNLLPSLKSLQK++ R+HQDLA
Sbjct: 737 RLIEAFADLLESCPYLEFILRWCQELCKAHGHSIQQNSRNLLPSLKSLQKAMARLHQDLA 796

Query: 841 DTCSSNEYMLQYLCSVGAKK 860
           DTCSSNEY+L+YLC+ G KK
Sbjct: 797 DTCSSNEYLLRYLCTTGTKK 816

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	860
TAIR|locus:2037798	900	PWP2 "AT1G15440" [Arabidopsis	0.730	0.697	0.761	0.0
UNIPROTKB|Q15269	919	PWP2 "Periodic tryptophan prot	0.716	0.670	0.476	3.4e-193
RGD|1582817	920	Pwp2 "PWP2 periodic tryptophan	0.703	0.657	0.471	7e-193
POMBASE|SPBC713.04c	854	SPBC713.04c "U3 snoRNP-associa	0.965	0.971	0.440	1.4e-192
UNIPROTKB|E1BL00	919	PWP2 "Uncharacterized protein"	0.703	0.658	0.471	2.7e-191
MGI|MGI:1341200	919	Pwp2 "PWP2 periodic tryptophan	0.703	0.658	0.466	2.7e-191
UNIPROTKB|G4N183	900	MGG_07465 "Periodic tryptophan	0.976	0.933	0.434	9.8e-190
SGD|S000000653	923	PWP2 "Conserved 90S pre-riboso	0.979	0.912	0.430	7.9e-188
CGD|CAL0003392	922	PWP2 [Candida albicans (taxid:	0.970	0.905	0.423	1.6e-180
UNIPROTKB|Q5A852	922	PWP2 "Putative uncharacterized	0.970	0.905	0.423	1.6e-180

TAIR|locus:2037798 PWP2 "AT1G15440" [Arabidopsis thaliana (taxid:3702)]

 Score = 2606 (922.4 bits), Expect = 0., Sum P(2) = 0.
 Identities = 480/630 (76%), Positives = 554/630 (87%)

Query:   227 DGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNG 286
             DGK  E+ E+ +        R   KW LLRKD  +QA +KVTACDYH+GLDMVVVGFSNG
Sbjct:   269 DGKGLESDEEGDDDDEEYMHRG--KWVLLRKDGCNQASAKVTACDYHQGLDMVVVGFSNG 326

Query:   287 VFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQ 346
             VFGLYQMPDF+CIHLLSISR+K+TTAVFNE GNWL FGCAKLGQLLVW+WR+E+YILKQQ
Sbjct:   327 VFGLYQMPDFICIHLLSISRQKLTTAVFNERGNWLTFGCAKLGQLLVWDWRTETYILKQQ 386

Query:   347 GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSL 406
             GHYFDVNC+ YSPDSQLLATGADDNKVKVW V SG CF+TFTEHTNAVTALHFMA+NHSL
Sbjct:   387 GHYFDVNCVTYSPDSQLLATGADDNKVKVWNVMSGTCFITFTEHTNAVTALHFMADNHSL 446

Query:   407 LSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT 466
             LSASLDGTVRAWD  RY+N++T+TTP+ RQFVSL +D SG+V+CAGTLDSFEIFVWS KT
Sbjct:   447 LSASLDGTVRAWDFKRYKNYKTYTTPTPRQFVSLTADPSGDVVCAGTLDSFEIFVWSKKT 506

Query:   467 GRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVV 526
             G++ DILSGHE PVHGL+FSP    LASSSWD TVRLW+VF  KG+VE+F H HDVLTV 
Sbjct:   507 GQIKDILSGHEAPVHGLMFSPLTQLLASSSWDYTVRLWDVFASKGTVETFRHNHDVLTVA 566

Query:   527 YRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTT 586
             +RPDG+QLA STLDGQI+FWD + G LMYTIEGRRDI+GGR+MTDRRSAANSSSGKCFTT
Sbjct:   567 FRPDGKQLASSTLDGQINFWDTIEGVLMYTIEGRRDIAGGRVMTDRRSAANSSSGKCFTT 626

Query:   587 LCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMD 646
             LCYSADG YILA G+S+YICMYD+ADQVLLRRFQI+HNLSLDGV+DFL+SK MTEAGP+D
Sbjct:   627 LCYSADGGYILAAGTSRYICMYDIADQVLLRRFQISHNLSLDGVLDFLHSKKMTEAGPID 686

Query:   647 LIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVL 706
             LIDDDNSD E G++KQ+RG L YDLPG+ PNRGRP I+TK L IAPTGR+F AATTEGVL
Sbjct:   687 LIDDDNSDEEGGIDKQSRGNLGYDLPGSRPNRGRPIIRTKSLSIAPTGRSFAAATTEGVL 746

Query:   707 VYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPKRALILSLRLNEDNLIKKCIFAISPVD 766
             ++SID++FIFDPTDLDIDVTPEAV+AA+ ED+  RAL LS+RLNED+LIKKCIFA++P D
Sbjct:   747 IFSIDDTFIFDPTDLDIDVTPEAVEAAIEEDEVSRALALSMRLNEDSLIKKCIFAVAPAD 806

Query:   767 IPAVASSIPYRYMQRLIEALSDLLESCPHLEFMLRWCQELCKTHGNTIQQNSRNLLPSLK 826
             I AVA S+  +Y++RL+EAL DLLE+CPHLEF+L WCQE+CK HG++IQ+N R LLP+L+
Sbjct:   807 IKAVAISVRQKYLERLMEALVDLLENCPHLEFILHWCQEICKAHGSSIQRNYRTLLPALR 866

Query:   827 SLQKSITRIHQDLADTCSSNEYMLQYLCSV 856
             SLQK+ITR HQDLAD CSSNEY L+YLCSV
Sbjct:   867 SLQKAITRAHQDLADMCSSNEYTLRYLCSV 896

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0001510 "RNA methylation" evidence=RCA

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0005730 "nucleolus" evidence=IDA

GO:0006364 "rRNA processing" evidence=IMP

GO:0009553 "embryo sac development" evidence=IMP

UNIPROTKB|Q15269 PWP2 "Periodic tryptophan protein 2 homolog" [Homo sapiens (taxid:9606)]

 Score = 1529 (543.3 bits), Expect = 3.4e-193, Sum P(2) = 3.4e-193
 Identities = 297/623 (47%), Positives = 416/623 (66%)

Query:   241 SPGTPERRVK-KWGLLRKDDFSQAP--SKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFV 297
             +P   E+  K K+  L K  F++    + +TA  +H+   ++V GF++G+F L+++P+F 
Sbjct:   262 TPAEEEKTGKVKYSRLAKYFFNKEGDFNNLTAAAFHKKSHLLVTGFASGIFHLHELPEFN 321

Query:   298 CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAY 357
              IH LSIS + I +   N  G+W+ FGC+ LGQLLVWEW+SESY+LKQQGH+  +  LAY
Sbjct:   322 LIHSLSISDQSIASVAINSSGDWIAFGCSGLGQLLVWEWQSESYVLKQQGHFNSMVALAY 381

Query:   358 SPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRA 417
             SPD Q + TG DD KVKVW   SGFCFVTFTEH++ VT + F A  + ++++S+DGTVRA
Sbjct:   382 SPDGQYIVTGGDDGKVKVWNTLSGFCFVTFTEHSSGVTGVTFTATGYVVVTSSMDGTVRA 441

Query:   418 WDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHE 477
             +DL RYRNFRTFT+P   QF  +A D SGE++ AG  DSFEIFVWSM+TGRLLD+LSGHE
Sbjct:   442 FDLHRYRNFRTFTSPRPTQFSCVAVDASGEIVSAGAQDSFEIFVWSMQTGRLLDVLSGHE 501

Query:   478 GPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACS 537
             GP+ GL F+P  + LAS+SWDKTVRLW++F+   + E+   T D L V +RPDG +LA +
Sbjct:   502 GPISGLCFNPMKSVLASASWDKTVRLWDMFDSWRTKETLALTSDALAVTFRPDGAELAVA 561

Query:   538 TLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYIL 597
             TL+ QI FWDP N     +IEGR D+  GR   D+ +A +++ GK FT LCYSADG  IL
Sbjct:   562 TLNSQITFWDPENAVQTGSIEGRHDLKTGRKELDKITAKHAAKGKAFTALCYSADGHSIL 621

Query:   598 AGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEE 657
             AGG SK++C+Y V +Q+L++RF+I+ NLSLD + +FLN + MTE G + LID D +  E+
Sbjct:   622 AGGMSKFVCIYHVREQILMKRFEISCNLSLDAMEEFLNRRKMTEFGNLALIDQD-AGQED 680

Query:   658 GVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYSIDESFIFD 717
             GV     G    D+        +P I+   L+ +PTGR + A TTEG+L+YS+D   +FD
Sbjct:   681 GVAIPLPGVRKGDMSS---RHFKPEIRVTSLRFSPTGRCWAATTTEGLLIYSLDTRVLFD 737

Query:   718 PTDLDIDVTPEAVDAALNEDQPKRALILSLRLNEDNLIKKCIFAISPVDIPAVASSIPYR 777
             P +LD  VTP  V  AL +    RA++++LRLNE  L+++ + A+   +I  V SS+P  
Sbjct:   738 PFELDTSVTPGRVREALRQQDFTRAILMALRLNESKLVQEALEAVPRGEIEVVTSSLPEL 797

Query:   778 YMQRLIEALSDLLESCPHLEFMLRWCQELCKTHGNTIQQNSRNLLPSLKSLQKSITRIHQ 837
             Y+++++E L+   E   HLEF L W  +L   HG  ++  +  LLP ++ LQKSI R   
Sbjct:   798 YVEKVLEFLASSFEVSRHLEFYLLWTHKLLMLHGQKLKSRAGTLLPVIQFLQKSIQRHLD 857

Query:   838 DLADTCSSNEYMLQYLCSVGAKK 860
             DL+  CS N Y +QY  +V  ++
Sbjct:   858 DLSKLCSWNHYNMQYALAVSKQR 880

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

RGD|1582817 Pwp2 "PWP2 periodic tryptophan protein homolog (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 1523 (541.2 bits), Expect = 7.0e-193, Sum P(2) = 7.0e-193
 Identities = 289/613 (47%), Positives = 413/613 (67%)

Query:   248 RVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISRE 307
             R+ K+ L ++ DF+     +TA  YH+   ++V GF++G+F L+++P+F  IH LSIS +
Sbjct:   278 RLAKYFLNKEGDFNN----LTAAAYHKKTHLLVTGFASGIFHLHELPEFNLIHSLSISDQ 333

Query:   308 KITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATG 367
             ++ +   N  G+W+ FGC+ LGQLLVWEW+SESY+LKQQGH+  +  LAYSPD Q + TG
Sbjct:   334 RVASVAINSSGDWIAFGCSGLGQLLVWEWQSESYVLKQQGHFNSMVALAYSPDGQYIVTG 393

Query:   368 ADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR 427
              DD KVKVW   SGFCFVT TEH++ VT + F A  H ++++SLDGTVRA+DL RYRNFR
Sbjct:   394 GDDGKVKVWNTLSGFCFVTLTEHSSGVTGVTFTATGHVIVTSSLDGTVRAYDLHRYRNFR 453

Query:   428 TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSP 487
             TFT+P   QF  +A D SGE++ AG  DSFEIFVWSM+TGRLLD+LSGHEGP+ GL F+P
Sbjct:   454 TFTSPRPTQFSCVAVDSSGEIVSAGAQDSFEIFVWSMQTGRLLDVLSGHEGPISGLCFNP 513

Query:   488 TNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWD 547
               + LAS+SWDKTVRLW++F+   + E+   T DVL V YRPDG +LA +TL+ QI FWD
Sbjct:   514 MKSILASASWDKTVRLWDMFDSWRTKETLSLTSDVLAVTYRPDGAELAVATLNSQITFWD 573

Query:   548 PLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICM 607
             P N   + +IEGR D+  GR   D+ +A +S+ GK FTT+CYSADG  ILAGG SK++C+
Sbjct:   574 PENAVQVGSIEGRHDLKTGRKELDKITAKHSAKGKAFTTVCYSADGQNILAGGMSKFVCL 633

Query:   608 YDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKL 667
             Y V +Q+L++RF+++ N SLD + +FLN + MTE G + LID D  + E GV     G  
Sbjct:   634 YHVREQILVKRFELSCNFSLDAMEEFLNRRKMTEFGNLALIDQDAGE-ENGVAIPLPGVR 692

Query:   668 DYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTP 727
               D+        +P I+   L+ +PTGR + A +TEG+L++S+D   +FDP +LD  VTP
Sbjct:   693 KGDMSS---RHFKPEIRVTSLRFSPTGRCWAATSTEGLLIFSLDAQMLFDPFELDTSVTP 749

Query:   728 EAVDAALNEDQPKRALILSLRLNEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALS 787
               +  AL + +  RA++++ RLNE  L ++ + A+   +I  V++S+P  Y+ +++E L+
Sbjct:   750 GRIREALRQREFTRAILMAFRLNEKKLAQEALEAVPQNEIEVVSASLPELYVVKVLEFLA 809

Query:   788 DLLESCPHLEFMLRWCQELCKTHGNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNE 847
                E   HLEF L W Q+L  +HG  ++  +  LLP ++ LQK + R   D++  C  N 
Sbjct:   810 ASFEESRHLEFYLIWTQKLLMSHGQRLKSRAGQLLPVVQFLQKGLQRHLDDISKLCDWNR 869

Query:   848 YMLQYLCSVGAKK 860
             Y +QY  +V  ++
Sbjct:   870 YNIQYALAVSKQR 882

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

POMBASE|SPBC713.04c SPBC713.04c "U3 snoRNP-associated protein Utp1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 1866 (661.9 bits), Expect = 1.4e-192, P = 1.4e-192
 Identities = 378/859 (44%), Positives = 545/859 (63%)

Query:     3 YRFQNLLGAPYRGGNAVLSQNT-KLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVS 61
             + F NL+G  +  GN V + +   ++SPVGNRVSV +L  + + T P E+  NI  IA+S
Sbjct:     5 FGFSNLVGTIFSKGNLVFTPDGFSILSPVGNRVSVYNLKDNTSYTFPFENHKNISHIALS 64

Query:    62 PDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRS 121
             P  T LL+VDE  RC   N     VLH   FK PV AI FSPNGK+ AV  GKL+Q+WR+
Sbjct:    65 PTSTLLLSVDEEGRCILCNFLRRSVLHYFNFKSPVGAIEFSPNGKFFAVSLGKLIQVWRT 124

Query:   122 PGFKKE-VFA-FELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHT 179
             P   +E  FA F L R      D + +++WS DS + +  SKDL  RL  V + ++G H 
Sbjct:   125 PNSLEEREFAPFVLHREYTGHFDDIVSISWSADSRFFISTSKDLTARLHSV-DPIEGFH- 182

Query:   180 NKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSG--NDGK-IDETMED 236
               P  L GH+++VV  FFS D++T     IYT+++D  +F W +S     G+ IDE  E+
Sbjct:   183 --PCALTGHKNTVVSGFFSKDQQT-----IYTVSKDGALFVWKYSPLFQAGEVIDEEAEE 235

Query:   237 SEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDF 296
             ++         R   W +  +  F+Q  SK+    +H   +++VVGFS+G+FG+Y++P F
Sbjct:   236 NKT--------RTHIWLIKERHYFNQN-SKLRCAAFHPTSNLLVVGFSSGLFGIYELPSF 286

Query:   297 VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLA 356
               ++ LSI++  I T   N  G+W+  G +KLGQLLVWEW+SESY+LKQQ HY  ++ L 
Sbjct:   287 TMLYQLSITQSNIDTLTVNSTGDWIAIGSSKLGQLLVWEWQSESYVLKQQSHYDALSTLQ 346

Query:   357 YSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVR 416
             YS D Q + TGADD K+KVW ++SGFC VTFT+HT+AV+ L F    + L S+SLDG+VR
Sbjct:   347 YSSDGQRIITGADDGKIKVWDMNSGFCIVTFTQHTSAVSGLCFSKRGNVLFSSSLDGSVR 406

Query:   417 AWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGH 476
             AWDL RYRNFRTFT PS  QF  +A D SGE++CAG+ DSFEIF+WS++TG+LL+ L+GH
Sbjct:   407 AWDLIRYRNFRTFTAPSRVQFSCIAVDPSGEIVCAGSQDSFEIFMWSVQTGQLLETLAGH 466

Query:   477 EGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLAC 536
             EGPV  L F+ + + LAS SWDKTVR+W++F   G VE  P   DVL++ + PDG+++  
Sbjct:   467 EGPVSSLSFNSSGSLLASGSWDKTVRIWDIFSRSGIVEPLPIPSDVLSLAFHPDGKEVCV 526

Query:   537 STLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYI 596
             ++LDGQ+ FW+   G+    I+GR+D+SGGR   D R+A NSS  K FT++CYSADGS +
Sbjct:   527 ASLDGQLTFWNVQEGKQTSLIDGRKDLSGGRRFDDARTAENSSLNKTFTSICYSADGSCV 586

Query:   597 LAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDD--DNSD 654
             L+ G+SKY+C+YD+   VL+++FQ++ N SL GV + LNS+ MTEAG ++LID   + SD
Sbjct:   587 LSAGTSKYVCLYDIITGVLIKKFQLSKNESLQGVQEMLNSRKMTEAGSIELIDTQGEESD 646

Query:   655 TEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYSIDESF 714
              E+ +++   G    DL      + RP I    ++ +P+G  F AATTEG+++YS+   F
Sbjct:   647 LEDRIDRTLPGARRGDLSA---RKTRPEIICHGVQFSPSGGAFAAATTEGLMIYSLYNDF 703

Query:   715 IFDPTDLDIDVTPEAVDAALNEDQPKRALILSLRLNEDNLIKKCIFAISPVDIPAVASSI 774
             +FDP +LD+D+TP        E +   +L+++LRLNE  +++K   +I   D+  V   +
Sbjct:   704 LFDPINLDMDITPSTTLTMCAEGEFLISLVMALRLNEYKVVQKVYESIPITDVEHVVQEL 763

Query:   775 PYRYMQRLIEALSDLLESCPHLEFMLRWCQELCKTHGNTIQQNSRNLLPSLKSLQKSITR 834
             P  Y+   +  LS      PH+EF LRW + +   HG  +++ +      L SLQKSI  
Sbjct:   764 PVSYLANFMGYLSSFAAETPHIEFHLRWMKSVLTYHGEYLRRKNFEFASQLTSLQKSIVV 823

Query:   835 IHQDLADTCSSNEYMLQYL 853
             + + L+   S+NE+ L +L
Sbjct:   824 LSKRLSQLSSNNEFQLSFL 842

GO:0005730 "nucleolus" evidence=IDA

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006364 "rRNA processing" evidence=ISO

GO:0030515 "snoRNA binding" evidence=ISO

UNIPROTKB|E1BL00 PWP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 1512 (537.3 bits), Expect = 2.7e-191, Sum P(2) = 2.7e-191
 Identities = 289/613 (47%), Positives = 412/613 (67%)

Query:   248 RVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISRE 307
             RV K+   ++ DF+     +TA  YH+ + ++V GF++G+F L+++P+F  IH LSIS +
Sbjct:   274 RVAKYFFNKEGDFNN----LTAAAYHKKVHLLVTGFASGIFHLHELPEFNLIHSLSISDQ 329

Query:   308 KITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATG 367
             ++ +   N  G+W+ FGC+ LGQLLVWEW+SESY+LKQQGH+  +  LAYSPD Q + TG
Sbjct:   330 RVASVAINSSGDWIAFGCSGLGQLLVWEWQSESYVLKQQGHFNSMVSLAYSPDGQYIVTG 389

Query:   368 ADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR 427
              DD KVKVW   SGFCFVTFTEH++ VT + F    + ++++S+DGTVRA+DL RYRNFR
Sbjct:   390 GDDGKVKVWNSLSGFCFVTFTEHSSGVTGVTFTTTGYVIVTSSMDGTVRAFDLHRYRNFR 449

Query:   428 TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSP 487
             TFT+P   QF  +A D SGE++ AG  DSFE+F+WSM+TGRLLD+LSGHEGP+ GL F+P
Sbjct:   450 TFTSPRPTQFSCVAVDSSGEIVSAGAQDSFEVFIWSMQTGRLLDVLSGHEGPISGLCFNP 509

Query:   488 TNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWD 547
               + LAS+SWD+TV LW++ +   + E+   T D L V +RPDG +LA +TL+ QI FWD
Sbjct:   510 MKSVLASASWDRTVHLWDMADSWRTTETLALTSDALAVTFRPDGAELAVATLNSQITFWD 569

Query:   548 PLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICM 607
             P N     +IEGR D+  GR   D+ +A +S+ GK FTTLCYSADG  ILAGG SK++C+
Sbjct:   570 PENAVQTGSIEGRHDLKTGRKELDKITAKHSAKGKAFTTLCYSADGQSILAGGMSKFVCI 629

Query:   608 YDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKL 667
             Y V +Q+L ++F+I+ NLSLD + +FLN + MTE G + LID D ++ E GV     G  
Sbjct:   630 YHVREQILRKKFEISCNLSLDAMEEFLNRRKMTEFGNLALIDQDAAE-EGGVAIPLPGVK 688

Query:   668 DYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTP 727
               D+        +P I+   L+ +PTGR + A TTEG+L+YS+D   +FDP +LD  VTP
Sbjct:   689 KGDMSS---RHFKPEIRVTSLRFSPTGRCWAATTTEGLLIYSLDAQMLFDPFELDTSVTP 745

Query:   728 EAVDAALNEDQPKRALILSLRLNEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALS 787
               + AAL +    RA++L+ RLNE  L+++ + A+   +I  ++SS+P  Y+++++E L+
Sbjct:   746 VRIRAALRQRDFTRAILLAFRLNERKLLQETLEAVPWDEIEVISSSLPDLYVEKVLEFLA 805

Query:   788 DLLESCPHLEFMLRWCQELCKTHGNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNE 847
                E   HLEF L W Q+L   HG  ++     LLP+++ LQKSI R   D++  C  N 
Sbjct:   806 SSFEVSHHLEFYLIWTQKLLMVHGQKLKSRVGTLLPAVQFLQKSIQRHLDDVSKLCDWNR 865

Query:   848 YMLQYLCSVGAKK 860
             Y LQY  +V  ++
Sbjct:   866 YNLQYALAVSKQR 878

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

MGI|MGI:1341200 Pwp2 "PWP2 periodic tryptophan protein homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 1511 (537.0 bits), Expect = 2.7e-191, Sum P(2) = 2.7e-191
 Identities = 286/613 (46%), Positives = 413/613 (67%)

Query:   248 RVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISRE 307
             R+ K+ L ++ DF+     +T+  YH+   ++V GF++G+F L+++P+F  IH LSIS +
Sbjct:   276 RLAKYFLNKEGDFNN----LTSAAYHKKTHLLVTGFASGIFHLHELPEFNLIHSLSISDQ 331

Query:   308 KITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATG 367
             ++ +   N  G+W+ FGC+ +GQLLVWEW+SESY+LKQQGH+  +  LAYSPD Q + TG
Sbjct:   332 RVASVAINSSGDWIAFGCSGMGQLLVWEWQSESYVLKQQGHFNSMVALAYSPDGQYIVTG 391

Query:   368 ADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR 427
              DD KVKVW   SGFCFVT TEH++ VT + F    H ++++SLDGTVRA+DL RYRNFR
Sbjct:   392 GDDGKVKVWNTLSGFCFVTLTEHSSGVTGVTFTTTGHVIVTSSLDGTVRAFDLHRYRNFR 451

Query:   428 TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSP 487
             TFT+P   QF  +A D SGE++ AG  DSFEIFVWSM+TGRLLD+LSGHEGPV GL F+P
Sbjct:   452 TFTSPRPTQFSCVAVDSSGEIVSAGAQDSFEIFVWSMQTGRLLDVLSGHEGPVSGLCFNP 511

Query:   488 TNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWD 547
               + LAS+SWDKTVRLW++F+   + E+   T D L V +RPDG +LA +TL+ QI FWD
Sbjct:   512 MKSILASASWDKTVRLWDMFDSWRTKETLTLTSDALAVTFRPDGAELAVATLNSQITFWD 571

Query:   548 PLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICM 607
             P N   + +IEGR D+  GR   D+ +A +S+ GK FTTLCYSADG  ILAGG SK++C+
Sbjct:   572 PENAVQVGSIEGRHDLKTGRKELDKITAKHSAKGKAFTTLCYSADGQSILAGGMSKFVCL 631

Query:   608 YDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKL 667
             Y V +Q+L++RF+++ NLSLD + +FLN + MTE G + LID D  + E GV     G  
Sbjct:   632 YHVREQILVKRFELSCNLSLDAMEEFLNRRKMTEFGNLALIDQDAGE-ENGVAVPLPGVR 690

Query:   668 DYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTP 727
               D+        +P I+   L+ +PTGR + A +TEG+L++S+D   +FDP +LD  VTP
Sbjct:   691 KGDMSS---RHFKPEIRVTSLRFSPTGRCWAATSTEGLLIFSLDAQMLFDPFELDTSVTP 747

Query:   728 EAVDAALNEDQPKRALILSLRLNEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALS 787
               +  AL + +  RA++++ RLNE  L ++ + A+   +I  V++S+P  Y+ +++E L+
Sbjct:   748 GRIREALRQREFTRAILMAFRLNEKKLAQEALEAVPQNEIEVVSTSLPELYVVKVLEFLA 807

Query:   788 DLLESCPHLEFMLRWCQELCKTHGNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNE 847
                E   HLEF L W Q+L  +HG  ++  +  LLP ++ LQK + R   D++  C  N 
Sbjct:   808 ASFEESRHLEFYLIWTQKLLMSHGQRLKSRAGQLLPVVQFLQKGLQRHLDDVSKLCDWNR 867

Query:   848 YMLQYLCSVGAKK 860
             + +QY+ +V  ++
Sbjct:   868 FNIQYVLAVSKQR 880

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G4N183 MGG_07465 "Periodic tryptophan protein 2" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 1839 (652.4 bits), Expect = 9.8e-190, P = 9.8e-190
 Identities = 378/870 (43%), Positives = 532/870 (61%)

Query:     2 NYRFQNLLGAPYRGGNAVLSQN-TKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAV 60
             +++F NLLG  Y  GN + S + T L SPVGNRV+V +L+ +K+ TLP     NI R+ +
Sbjct:     4 DFKFSNLLGTVYCRGNLLFSPDGTHLYSPVGNRVTVFNLVDNKSYTLPFAHRKNIVRLDL 63

Query:    61 SPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWR 120
             +P G  LL+VDE+      N+   + ++   F+  V A+ FSP+G++ AVG G+ +++W+
Sbjct:    64 TPRGNLLLSVDEDGHAILTNVVRRISIYHFSFRTAVTALSFSPSGRHFAVGIGRRIEVWQ 123

Query:   121 SP-------GFKKEVFA-FELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKE 172
              P       G     FA F    + A   D+V  + WS DS + L  SKDL  R++ + +
Sbjct:   124 VPQTPDSATGDDGLEFAPFVRHHSHAAHFDEVRHIEWSRDSRFFLSASKDLTARIWSLNQ 183

Query:   173 KLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDE 232
             + +G     P +L GHR  VVG +FS+D++T     IYT+++D  +F W + G   K D+
Sbjct:   184 E-EGF---TPTVLSGHRQGVVGAWFSMDQET-----IYTVSKDGAVFDWQYVGPQDKEDD 234

Query:   233 TMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQ 292
              M+       G  E  ++ W ++++  F Q  + +    +H   +++V GFSNG+FGLY+
Sbjct:   235 DMD-------GADESDLR-WRIVKRHYFMQNNASLKCAAFHAESNLLVAGFSNGIFGLYE 286

Query:   293 MPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDV 352
             MPDF  IH LSIS+  I     N+ G WL FG +KLGQLLVWEW+SESYILKQQGH+  +
Sbjct:   287 MPDFNLIHTLSISQNGIDFVSINKSGEWLAFGASKLGQLLVWEWQSESYILKQQGHFDSM 346

Query:   353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412
             N LAYSPD + + T ADD K+KVW + SGFC VTFTEHT+ VTA  F    + L +ASLD
Sbjct:   347 NALAYSPDGKRIVTAADDGKLKVWDIESGFCIVTFTEHTSGVTACQFAKKGNVLFTASLD 406

Query:   413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDI 472
             G++RAWDL RYRNFRTFT P+   F  +A D SGEV+ AG+LDSF++ +WS++TG+LLD 
Sbjct:   407 GSIRAWDLIRYRNFRTFTAPTRLSFSCMAVDPSGEVVAAGSLDSFDVHIWSVQTGQLLDQ 466

Query:   473 LSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGR 532
             LSGHEGPV  + F+P    L S SWDKT R+W+VF    + E      DVL+V  RPD  
Sbjct:   467 LSGHEGPVSAVAFAPDGGLLVSGSWDKTARIWSVFNRTQTSEPLQLQADVLSVAVRPDSS 526

Query:   533 QLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSAD 592
             QLA STLDGQI FW     + +  ++GRRD+SGGR +TDRR+AAN+   K F T+ YS D
Sbjct:   527 QLAVSTLDGQISFWSVTEAQQVSGVDGRRDVSGGRKITDRRTAANAGGTKAFHTIQYSMD 586

Query:   593 GSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDD-D 651
             GS ++AGG+SKY+C+Y     VLL++F ++ NLSL G  +FLNSK +TEAGP +L+DD D
Sbjct:   587 GSCLIAGGNSKYMCLYSTTTMVLLKKFTVSVNLSLSGTQEFLNSKQLTEAGPQELLDDHD 646

Query:   652 NSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYSID 711
              SD E+ V +   G      P A        ++   +  AP G  F AA+TEG+L+YS+D
Sbjct:   647 ASDREDRVNRSLPGSKRGGDPSARTTHAE--VKVSGVSFAPDGAAFCAASTEGLLIYSLD 704

Query:   712 ESFIFDPTDLDIDVTPEAVDAAL-NEDQPKRALILSLRLNEDNLIKKCIFAISPVDIPAV 770
              +  FDP DL++++TP +  A L NE    +AL+++ RLNE  LIK+   AI   DIP V
Sbjct:   705 HTVQFDPFDLNMEITPASTLAVLENEKDYLKALVMAFRLNEAGLIKRVYQAIPHRDIPLV 764

Query:   771 ASSIPYRYMQRLIEALSDLLESCPHLEFMLRWCQELCKTHGNTIQQNSRNLLPSLKSLQK 830
                 P  Y+ RL+  ++   E  PH+EF L W + L   HG  +  N   +   L+ + +
Sbjct:   765 VEQFPPVYVARLLRFVAAQTEESPHIEFCLLWIKALVDKHGKWLAANRAKVDVELRVVAR 824

Query:   831 SITRIHQDLADTCSSNEYMLQYLCSVGAKK 860
             +I R+  ++      N YM+ YL      K
Sbjct:   825 AIARMRDEIRRLADENVYMVDYLLGQAENK 854

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

SGD|S000000653 PWP2 "Conserved 90S pre-ribosomal component" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 1821 (646.1 bits), Expect = 7.9e-188, P = 7.9e-188
 Identities = 370/860 (43%), Positives = 534/860 (62%)

Query:     2 NYRFQNLLGAPYRGGNAVLSQNTK-LISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAV 60
             +++F NLLG  YR GN   S + K L+SPVGNRVSV DLI +K+ T   E   NI  I +
Sbjct:     4 DFKFSNLLGTVYRQGNITFSDDGKQLLSPVGNRVSVFDLINNKSFTFEYEHRKNIAAIDL 63

Query:    61 SPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWR 120
             +  GT L+++DE+ R   +N     VLH   FK   +A+ FSP+G+  A+ +G+ +QIW+
Sbjct:    64 NKQGTLLISIDEDGRAILVNFKARNVLHHFNFKEKCSAVKFSPDGRLFALASGRFLQIWK 123

Query:   121 SPGFKKE-VFA-FELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIH 178
             +P   K+  FA F   R  A     +T+L WS DS ++L  SKDL+ +++ V  + K + 
Sbjct:   124 TPDVNKDRQFAPFVRHRVHAGHFQDITSLTWSQDSRFILTTSKDLSAKIWSVDSEEKNLA 183

Query:   179 TNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSE 238
                     GHRD V+G FFS D++     +IYT+++D  +F W F+      D+   + +
Sbjct:   184 ATT---FNGHRDYVMGAFFSHDQE-----KIYTVSKDGAVFVWEFTKRPSDDDDNESEDD 235

Query:   239 PPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVC 298
                      +   W + +K  F    +KV    +H    ++ VGF++G F LY +PDF  
Sbjct:   236 DKQEEVDISKYS-WRITKKHFFYANQAKVKCVTFHPATRLLAVGFTSGEFRLYDLPDFTL 294

Query:   299 IHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYS 358
             I  LS+ +  + T   N+ G WL FG +KLGQLLV+EW+SESYILKQQGH+   N LAYS
Sbjct:   295 IQQLSMGQNPVNTVSVNQTGEWLAFGSSKLGQLLVYEWQSESYILKQQGHFDSTNSLAYS 354

Query:   359 PDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAW 418
             PD   + T ++D K+KVW ++SGFC  TF EHT++VTA+ F      + S+SLDGTVRAW
Sbjct:   355 PDGSRVVTASEDGKIKVWDITSGFCLATFEEHTSSVTAVQFAKRGQVMFSSSLDGTVRAW 414

Query:   419 DLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEG 478
             DL RYRNFRTFT     QF  LA D SGEV+CAG+LD+F+I VWS++TG+LLD LSGHEG
Sbjct:   415 DLIRYRNFRTFTGTERIQFNCLAVDPSGEVVCAGSLDNFDIHVWSVQTGQLLDALSGHEG 474

Query:   479 PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACST 538
             PV  L FS  N+ LAS+SWDKT+R+W++F     VE      DVL +  RPDG+++A ST
Sbjct:   475 PVSCLSFSQENSVLASASWDKTIRIWSIFGRSQQVEPIEVYSDVLALSMRPDGKEVAVST 534

Query:   539 LDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILA 598
             L GQI  ++  + + +  I+ R+DI  GR   DR +A NS   K FTT+ YS DG  I+A
Sbjct:   535 LKGQISIFNIEDAKQVGNIDCRKDIISGRFNQDRFTAKNSERSKFFTTIHYSFDGMAIVA 594

Query:   599 GGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDD--DNSDTE 656
             GG++  IC+YDV ++VLL+RF ++ N++L+G ++FLNSK MTEAG +DLIDD  +NSD E
Sbjct:   595 GGNNNSICLYDVPNEVLLKRFIVSRNMALNGTLEFLNSKKMTEAGSLDLIDDAGENSDLE 654

Query:   657 EGVEKQTRGKLDYDLPGALPNRG-RPTIQTKCLKIAPTGRNFVAATTEGVLVYSIDESFI 715
             + ++    G       G L  R  RP ++   ++ +PT   F AA+TEG+L+YS +++ +
Sbjct:   655 DRIDNSLPGS---QRGGDLSTRKMRPEVRVTSVQFSPTANAFAAASTEGLLIYSTNDTIL 711

Query:   716 FDPTDLDIDVTPEAVDAALNEDQPKRALILSLRLNEDNLIKKCIFAISPVDIPAVASSIP 775
             FDP DLD+DVTP +   AL E Q   AL+++ RLNE+ LI K   AI   +IP VAS+IP
Sbjct:   712 FDPFDLDVDVTPHSTVEALREKQFLNALVMAFRLNEEYLINKVYEAIPIKEIPLVASNIP 771

Query:   776 YRYMQRLIEALSDLLESCPHLEFMLRWCQELCKTHGNTIQQNSRNLLPSLKSLQKSITRI 835
               Y+ R+++ + D      H+EF L W + L    G  I ++      +++S+Q+ I R+
Sbjct:   772 AIYLPRILKFIGDFAIESQHIEFNLIWIKALLSASGGYINEHKYLFSTAMRSIQRFIVRV 831

Query:   836 HQDLADTCSSNEYMLQYLCS 855
              +++ +T + N+Y  ++L S
Sbjct:   832 AKEVVNTTTDNKYTYRFLVS 851

GO:0005730 "nucleolus" evidence=IEA;IDA

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0030686 "90S preribosome" evidence=IDA

GO:0032040 "small-subunit processome" evidence=IDA

GO:0000910 "cytokinesis" evidence=IMP

GO:0030010 "establishment of cell polarity" evidence=IMP

GO:0034388 "Pwp2p-containing subcomplex of 90S preribosome" evidence=IDA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0030515 "snoRNA binding" evidence=IPI

CGD|CAL0003392 PWP2 [Candida albicans (taxid:5476)]

 Score = 1752 (621.8 bits), Expect = 1.6e-180, P = 1.6e-180
 Identities = 364/860 (42%), Positives = 525/860 (61%)

Query:     2 NYRFQNLLGAPYRGGNAVLSQN-TKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAV 60
             +++F NLLG  YR GN V +Q+ TKL+SPVGNRVS  DLIKS++ T   +   N+  IA+
Sbjct:     4 DFKFSNLLGTVYRKGNLVFNQDGTKLLSPVGNRVSCFDLIKSQSFTFDYQHRKNVQCIAL 63

Query:    61 SPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWR 120
             +   T ++++DE+ R   +N    VVLH   FK  VN I FSP GKY A+   + +Q+W+
Sbjct:    64 NNQNTLMISIDEDGRAILVNFVSRVVLHHFNFKSKVNDIKFSPCGKYFAIAIDRFIQVWK 123

Query:   121 SPGFKKE-VFA-FELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIH 178
             +P   ++  FA F   R  +   D+V  ++WS DS + +  SKD+  ++F +    K + 
Sbjct:   124 TPDLTEDRQFAPFVRHRIYSGHFDEVLNISWSLDSRFFISTSKDMTAKIFSLNSDEKDV- 182

Query:   179 TNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSE 238
                     GHRD V+  FFS D++      IYT+++D  +F W ++    K +    DSE
Sbjct:   183 ---AMTFSGHRDYVINAFFSHDQEI-----IYTVSKDGALFKWEYTERP-KPENEDSDSE 233

Query:   239 PPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVC 298
               +   P      W +  K+ F  A  K+    +H    ++VVGF+NG F LY++ DF  
Sbjct:   234 DDATDKP----MSWRITAKN-FFYADGKLKCACFHPQSKLLVVGFTNGEFRLYEIEDFNL 288

Query:   299 IHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYS 358
             I  LS+ +  + T   N+ G WL FG AKLGQLLV+EW+SESYILKQQGH+  +N L YS
Sbjct:   289 IQSLSMGQNAVNTVNINKTGEWLAFGSAKLGQLLVYEWQSESYILKQQGHFDSMNTLCYS 348

Query:   359 PDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAW 418
             PD   L TG+DD K+K+W V SGFC +TFTEHT+AVT + F      L S+SLDGT+RAW
Sbjct:   349 PDGSRLVTGSDDGKIKIWDVRSGFCLMTFTEHTSAVTQVQFAKRGQVLFSSSLDGTIRAW 408

Query:   419 DLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEG 478
             DL R+RNF+TFT  S  QF  LA D SGEVI  G+ D+FEI+VWS++TG+LLD L+GHEG
Sbjct:   409 DLIRFRNFKTFTATSRVQFNCLAVDPSGEVIVGGSQDTFEIYVWSVQTGQLLDSLTGHEG 468

Query:   479 PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACST 538
             P+  L F   N+ LAS+SWDKT+R+WN+F    +VE      D L +  RPD ++LA ST
Sbjct:   469 PISCLTFGKENSILASASWDKTIRIWNIFSRNQTVEPIEIQSDALCLTMRPDCKELAVST 528

Query:   539 LDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILA 598
             LDG +  +D  + + ++ I+GR+DI  GR + D+  A NS+ GK F+T+ YS DG  +LA
Sbjct:   529 LDGHVTIFDIEDAKQLHLIDGRKDIVNGRYLEDKFIAKNSNRGKYFSTIAYSFDGLTLLA 588

Query:   599 GGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGP-MDLID--DDNSDT 655
              G++  ICMYD+ ++VLL+RF ++ N+SLDG + FLNS  +T+AG   DLID   + SD 
Sbjct:   589 AGNNNSICMYDIENEVLLKRFIVSENMSLDGTLQFLNSSKITDAGTNSDLIDRAGELSDL 648

Query:   656 EEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYSIDESFI 715
             E+ V+    G      P     R RP ++   ++ +PT   F AA+TEG+L++SI++  I
Sbjct:   649 EDRVDNSLPGSHRGGDPSE--RRTRPEVRVTAVEFSPTTAAFAAASTEGLLIFSINQELI 706

Query:   716 FDPTDLDIDVTPEAVDAALNEDQPKRALILSLRLNEDNLIKKCIFAISPVDIPAVASSIP 775
             FDP DLD+DVTPEA   +L E +   AL+++ RLNE+ LI + I +I   DI  V   +P
Sbjct:   707 FDPFDLDVDVTPEATLESLKEKEYLVALVMAFRLNENYLIHRVIESIPLQDIKLVCQDLP 766

Query:   776 YRYMQRLIEALSDLL--ESCPHLEFMLRWCQELCKTHGNTIQQNSRNLLPSLKSLQKSIT 833
               Y+ R++  + +LL  +  PH+E+ L   + L   HG  I  N      S+K L + + 
Sbjct:   767 VIYVNRVLNFIGELLTKKESPHIEYYLIMVKNLLIQHGRYISSNKFEFQSSMKLLSRFLN 826

Query:   834 RIHQDLADTCSSNEYMLQYL 853
             +  +D+ +    N+++L YL
Sbjct:   827 KTAKDVINVGKRNDHLLTYL 846

GO:0032040 "small-subunit processome" evidence=IDA

GO:0030515 "snoRNA binding" evidence=IEA

GO:0034388 "Pwp2p-containing subcomplex of 90S preribosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0030010 "establishment of cell polarity" evidence=IEA

GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000910 "cytokinesis" evidence=IEA

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

UNIPROTKB|Q5A852 PWP2 "Putative uncharacterized protein PWP2" [Candida albicans SC5314 (taxid:237561)]

 Score = 1752 (621.8 bits), Expect = 1.6e-180, P = 1.6e-180
 Identities = 364/860 (42%), Positives = 525/860 (61%)

Query:     2 NYRFQNLLGAPYRGGNAVLSQN-TKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAV 60
             +++F NLLG  YR GN V +Q+ TKL+SPVGNRVS  DLIKS++ T   +   N+  IA+
Sbjct:     4 DFKFSNLLGTVYRKGNLVFNQDGTKLLSPVGNRVSCFDLIKSQSFTFDYQHRKNVQCIAL 63

Query:    61 SPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWR 120
             +   T ++++DE+ R   +N    VVLH   FK  VN I FSP GKY A+   + +Q+W+
Sbjct:    64 NNQNTLMISIDEDGRAILVNFVSRVVLHHFNFKSKVNDIKFSPCGKYFAIAIDRFIQVWK 123

Query:   121 SPGFKKE-VFA-FELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIH 178
             +P   ++  FA F   R  +   D+V  ++WS DS + +  SKD+  ++F +    K + 
Sbjct:   124 TPDLTEDRQFAPFVRHRIYSGHFDEVLNISWSLDSRFFISTSKDMTAKIFSLNSDEKDV- 182

Query:   179 TNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSE 238
                     GHRD V+  FFS D++      IYT+++D  +F W ++    K +    DSE
Sbjct:   183 ---AMTFSGHRDYVINAFFSHDQEI-----IYTVSKDGALFKWEYTERP-KPENEDSDSE 233

Query:   239 PPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVC 298
               +   P      W +  K+ F  A  K+    +H    ++VVGF+NG F LY++ DF  
Sbjct:   234 DDATDKP----MSWRITAKN-FFYADGKLKCACFHPQSKLLVVGFTNGEFRLYEIEDFNL 288

Query:   299 IHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYS 358
             I  LS+ +  + T   N+ G WL FG AKLGQLLV+EW+SESYILKQQGH+  +N L YS
Sbjct:   289 IQSLSMGQNAVNTVNINKTGEWLAFGSAKLGQLLVYEWQSESYILKQQGHFDSMNTLCYS 348

Query:   359 PDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAW 418
             PD   L TG+DD K+K+W V SGFC +TFTEHT+AVT + F      L S+SLDGT+RAW
Sbjct:   349 PDGSRLVTGSDDGKIKIWDVRSGFCLMTFTEHTSAVTQVQFAKRGQVLFSSSLDGTIRAW 408

Query:   419 DLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEG 478
             DL R+RNF+TFT  S  QF  LA D SGEVI  G+ D+FEI+VWS++TG+LLD L+GHEG
Sbjct:   409 DLIRFRNFKTFTATSRVQFNCLAVDPSGEVIVGGSQDTFEIYVWSVQTGQLLDSLTGHEG 468

Query:   479 PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACST 538
             P+  L F   N+ LAS+SWDKT+R+WN+F    +VE      D L +  RPD ++LA ST
Sbjct:   469 PISCLTFGKENSILASASWDKTIRIWNIFSRNQTVEPIEIQSDALCLTMRPDCKELAVST 528

Query:   539 LDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILA 598
             LDG +  +D  + + ++ I+GR+DI  GR + D+  A NS+ GK F+T+ YS DG  +LA
Sbjct:   529 LDGHVTIFDIEDAKQLHLIDGRKDIVNGRYLEDKFIAKNSNRGKYFSTIAYSFDGLTLLA 588

Query:   599 GGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGP-MDLID--DDNSDT 655
              G++  ICMYD+ ++VLL+RF ++ N+SLDG + FLNS  +T+AG   DLID   + SD 
Sbjct:   589 AGNNNSICMYDIENEVLLKRFIVSENMSLDGTLQFLNSSKITDAGTNSDLIDRAGELSDL 648

Query:   656 EEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYSIDESFI 715
             E+ V+    G      P     R RP ++   ++ +PT   F AA+TEG+L++SI++  I
Sbjct:   649 EDRVDNSLPGSHRGGDPSE--RRTRPEVRVTAVEFSPTTAAFAAASTEGLLIFSINQELI 706

Query:   716 FDPTDLDIDVTPEAVDAALNEDQPKRALILSLRLNEDNLIKKCIFAISPVDIPAVASSIP 775
             FDP DLD+DVTPEA   +L E +   AL+++ RLNE+ LI + I +I   DI  V   +P
Sbjct:   707 FDPFDLDVDVTPEATLESLKEKEYLVALVMAFRLNENYLIHRVIESIPLQDIKLVCQDLP 766

Query:   776 YRYMQRLIEALSDLL--ESCPHLEFMLRWCQELCKTHGNTIQQNSRNLLPSLKSLQKSIT 833
               Y+ R++  + +LL  +  PH+E+ L   + L   HG  I  N      S+K L + + 
Sbjct:   767 VIYVNRVLNFIGELLTKKESPHIEYYLIMVKNLLIQHGRYISSNKFEFQSSMKLLSRFLN 826

Query:   834 RIHQDLADTCSSNEYMLQYL 853
             +  +D+ +    N+++L YL
Sbjct:   827 KTAKDVINVGKRNDHLLTYL 846

GO:0032040 "small-subunit processome" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C1X1	PWP2_SCHPO	No assigned EC number	0.4373	0.9616	0.9683	yes	no
Q54PE0	PWP2_DICDI	No assigned EC number	0.3905	0.9697	0.9045	yes	no
Q5RFQ3	PWP2_PONAB	No assigned EC number	0.4224	0.9779	0.9161	yes	no
P25635	PWP2_YEAST	No assigned EC number	0.4292	0.9686	0.9024	yes	no
P91341	PWP2_CAEEL	No assigned EC number	0.3378	0.9697	0.9164	yes	no
Q15269	PWP2_HUMAN	No assigned EC number	0.4244	0.9779	0.9151	yes	no
Q8BU03	PWP2_MOUSE	No assigned EC number	0.4143	0.9779	0.9151	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	860
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-52
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-44
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-43
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-43
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-33
pfam04003	109	pfam04003, Utp12, Dip2/Utp12 Family	3e-31
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-31
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-28
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-28
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-22
smart00320	40	smart00320, WD40, WD40 repeats	2e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-07
smart00320	40	smart00320, WD40, WD40 repeats	1e-06
smart00320	40	smart00320, WD40, WD40 repeats	4e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	8e-06
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	2e-05
cd12416	98	cd12416, RRM4_RBM28_like, RNA recognition motif 4	3e-04
smart00320	40	smart00320, WD40, WD40 repeats	7e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.001
smart00320	40	smart00320, WD40, WD40 repeats	0.002
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  184 bits (470), Expect = 2e-52
 Identities = 80/264 (30%), Positives = 131/264 (49%), Gaps = 7/264 (2%)

Query: 298 CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAY 357
               L      +T   F+  G  L  G    G + VW+  +   +   +GH   V  +A 
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSG-DGTIKVWDLETGELLRTLKGHTGPVRDVAA 59

Query: 358 SPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRA 417
           S D   LA+G+ D  +++W + +G C  T T HT+ V+++ F  +   L S+S D T++ 
Sbjct: 60  SADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV 119

Query: 418 WDLFRYRNFRTFTTPSSRQFV-SLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGH 476
           WD+   +   T    +   +V S+A    G  + + + D   I +W ++TG+ +  L+GH
Sbjct: 120 WDVETGKCLTTLRGHTD--WVNSVAFSPDGTFVASSSQDGT-IKLWDLRTGKCVATLTGH 176

Query: 477 EGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFP-HTHDVLTVVYRPDGRQLA 535
            G V+ + FSP    L SSS D T++LW++  GK  + +   H + V +V + PDG  LA
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK-CLGTLRGHENGVNSVAFSPDGYLLA 235

Query: 536 CSTLDGQIHFWDPLNGELMYTIEG 559
             + DG I  WD   GE + T+ G
Sbjct: 236 SGSEDGTIRVWDLRTGECVQTLSG 259

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  160 bits (406), Expect = 7e-44
 Identities = 80/287 (27%), Positives = 139/287 (48%), Gaps = 9/287 (3%)

Query: 264 PSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVF 323
              VT   +     ++  G  +G   ++ +     +  L      +     +  G +L  
Sbjct: 9   TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLAS 68

Query: 324 GCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFC 383
             +    + +W+  +   +    GH   V+ +A+SPD ++L++ + D  +KVW V +G C
Sbjct: 69  -GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC 127

Query: 384 FVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTT-PSSRQFV-SLA 441
             T   HT+ V ++ F  +   + S+S DGT++ WDL   R  +   T       V S+A
Sbjct: 128 LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL---RTGKCVATLTGHTGEVNSVA 184

Query: 442 SDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTV 501
               GE + + + D   I +W + TG+ L  L GHE  V+ + FSP    LAS S D T+
Sbjct: 185 FSPDGEKLLSSSSDG-TIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTI 243

Query: 502 RLWNVFEGKGSVESFP-HTHDVLTVVYRPDGRQLACSTLDGQIHFWD 547
           R+W++  G+  V++   HT+ V ++ + PDG++LA  + DG I  WD
Sbjct: 244 RVWDLRTGE-CVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  159 bits (405), Expect = 1e-43
 Identities = 87/374 (23%), Positives = 138/374 (36%), Gaps = 86/374 (22%)

Query: 133 LIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSV 192
           L RTL      VT + +SPD   L  GS D  +++ +  E  + + T K     GH   V
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKV-WDLETGELLRTLK-----GHTGPV 54

Query: 193 VGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKW 252
                S D                Y+ S     +D  I                 R+   
Sbjct: 55  RDVAASADGT--------------YLAS---GSSDKTI-----------------RLWDL 80

Query: 253 GLLRK-DDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITT 311
                    +   S V++  +     ++     +    ++ +    C+  L         
Sbjct: 81  ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL--------- 131

Query: 312 AVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDN 371
                                             +GH   VN +A+SPD   +A+ + D 
Sbjct: 132 ----------------------------------RGHTDWVNSVAFSPDGTFVASSSQDG 157

Query: 372 KVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTT 431
            +K+W + +G C  T T HT  V ++ F  +   LLS+S DGT++ WDL   +   T   
Sbjct: 158 TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL-R 216

Query: 432 PSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNAT 491
                  S+A    G ++ +G+ D   I VW ++TG  +  LSGH   V  L +SP    
Sbjct: 217 GHENGVNSVAFSPDGYLLASGSEDG-TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKR 275

Query: 492 LASSSWDKTVRLWN 505
           LAS S D T+R+W+
Sbjct: 276 LASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  157 bits (399), Expect = 7e-43
 Identities = 75/275 (27%), Positives = 114/275 (41%), Gaps = 64/275 (23%)

Query: 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHS 405
           +GH   V C+A+SPD +LLATG+ D  +KVW + +G    T   HT  V  +   A+   
Sbjct: 6   KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY 65

Query: 406 LLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK 465
           L S S D T+R                                            +W ++
Sbjct: 66  LASGSSDKTIR--------------------------------------------LWDLE 81

Query: 466 TGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTV 525
           TG  +  L+GH   V  + FSP    L+SSS DKT+++W+V  GK       HT  V +V
Sbjct: 82  TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141

Query: 526 VYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFT 585
            + PDG  +A S+ DG I  WD   G+ + T+ G                          
Sbjct: 142 AFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG--------------------EVN 181

Query: 586 TLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQ 620
           ++ +S DG  +L+  S   I ++D++    L   +
Sbjct: 182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR 216

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  134 bits (338), Expect = 2e-33
 Identities = 97/343 (28%), Positives = 164/343 (47%), Gaps = 28/343 (8%)

Query: 295 DFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNC 354
               I  L    E +T+  F+  G  L  G +  G + +W+ R+   +    GH   V+ 
Sbjct: 144 PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS 203

Query: 355 LAYSPDSQ-LLATGADDNKVKVWTVSSGFCF-VTFTEHTNAVTALHFMANNHSLLSASLD 412
           LA+SPD   L+A+G+ D  +++W +S+G     T + H+++V +  F  +   L S S D
Sbjct: 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSD 262

Query: 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDI 472
           GT+R WDL    +     +  S   +S+A    G+++ +G+ D   + +W ++TG+LL  
Sbjct: 263 GTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDG-TVRLWDLETGKLLSS 321

Query: 473 LS--GHEGPVHGLVFSPTNATLASS-SWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRP 529
           L+  GHEGPV  L FSP  + L S  S D T+RLW++  GK  +++     +VL+V + P
Sbjct: 322 LTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-PLKTLEGHSNVLSVSFSP 380

Query: 530 DGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCY 589
           DGR ++  + DG +  WD   G L+  ++G                         T+L +
Sbjct: 381 DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH--------------------TSRVTSLDF 420

Query: 590 SADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVID 632
           S DG  + +G S   I ++D+   +    F     +      D
Sbjct: 421 SPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKSSD 463

Length = 466

>gnl|CDD|217837 pfam04003, Utp12, Dip2/Utp12 Family

 Score =  117 bits (296), Expect = 3e-31
 Identities = 47/108 (43%), Positives = 64/108 (59%), Gaps = 3/108 (2%)

Query: 750 NEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLL--ESCPHLEFMLRWCQELC 807
           NE+ LI K +  I P DI     S+P+ Y+ RL+E L++ L  E  PHLEF+LRW + L 
Sbjct: 1   NEEELILKVLEKIPPSDIELTLLSLPFSYVLRLLEFLAERLQAERSPHLEFLLRWLKFLL 60

Query: 808 KTHGNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCS 855
           + HG  +  N  NLLP L+SLQK + R  +DL D    N+  L +L S
Sbjct: 61  RIHGKYLVSN-PNLLPQLRSLQKVLRRRVKDLRDLLGLNKGGLDFLKS 107

This domain is found at the C-terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein the yeast protein is called Utp12 or DIP2. Length = 109

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  127 bits (319), Expect = 5e-31
 Identities = 100/418 (23%), Positives = 170/418 (40%), Gaps = 37/418 (8%)

Query: 136 TLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGC 195
            L    D +T++ +SPD   LL GS D  ++L+ +    K I +    L   H  SV   
Sbjct: 60  LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKS----LEGLHDSSVSKL 115

Query: 196 FFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLL 255
             S          + + + D  +  W  S     I                         
Sbjct: 116 ALSS--PDGNSILLASSSLDGTVKLWDLSTPGKLIR------------------------ 149

Query: 256 RKDDFSQAPSKVTACDYHRGLDMVVVG-FSNGVFGLYQMPDFVCIHLLSISREKITTAVF 314
                      VT+  +     ++  G   +G   L+ +     +  L+   + +++  F
Sbjct: 150 ---TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAF 206

Query: 315 NELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVK 374
           +  G  L+   +  G + +W+  +   +      + D    ++SPD  LLA+G+ D  ++
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIR 266

Query: 375 VWTVSSGF-CFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPS 433
           +W + S      T + H+++V ++ F  +   L S S DGTVR WDL   +   + T   
Sbjct: 267 LWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKG 326

Query: 434 SRQFV-SLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATL 492
               V SL+    G ++ +G  D   I +W ++TG+ L  L GH   V  + FSP    +
Sbjct: 327 HEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVV 385

Query: 493 ASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLN 550
           +S S D TVRLW++  G        HT  V ++ + PDG+ LA  + D  I  WD   
Sbjct: 386 SSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  113 bits (285), Expect = 9e-28
 Identities = 69/328 (21%), Positives = 127/328 (38%), Gaps = 51/328 (15%)

Query: 52  SSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKY-PVNAILFSPNGKYIA- 109
           +  +  +A SPDG  L T   +      +L    +L  ++    PV  +  S +G Y+A 
Sbjct: 9   TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLAS 68

Query: 110 VGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFY 169
             + K +++W            E +RTL      V+++ +SPD   L   S+D  ++++ 
Sbjct: 69  GSSDKTIRLWDLET-------GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW- 120

Query: 170 VKEKLKGIHTNKP-FLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDG 228
                  + T K    L GH D V    FS D        + + ++D  +  W      G
Sbjct: 121 ------DVETGKCLTTLRGHTDWVNSVAFSPDGTF-----VASSSQDGTIKLW--DLRTG 167

Query: 229 KIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVF 288
           K   T+                               +V +  +    + ++   S+G  
Sbjct: 168 KCVATLTGHT--------------------------GEVNSVAFSPDGEKLLSSSSDGTI 201

Query: 289 GLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGH 348
            L+ +    C+  L      + +  F+  G  L    ++ G + VW+ R+   +    GH
Sbjct: 202 KLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLA-SGSEDGTIRVWDLRTGECVQTLSGH 260

Query: 349 YFDVNCLAYSPDSQLLATGADDNKVKVW 376
              V  LA+SPD + LA+G+ D  +++W
Sbjct: 261 TNSVTSLAWSPDGKRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  117 bits (293), Expect = 9e-28
 Identities = 101/356 (28%), Positives = 163/356 (45%), Gaps = 34/356 (9%)

Query: 301 LLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ--QGHYFDVNCLAY- 357
           LL    + IT+  F+  G  L+ G +  G + +W+  +   ++K     H   V+ LA  
Sbjct: 60  LLRGHEDSITSIAFSPDGELLLSGSS-DGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS 118

Query: 358 SPDSQ--LLATGADDNKVKVWTVSSGFCFV-TFTEHTNAVTALHFMANNHSLLSAS-LDG 413
           SPD    LLA+ + D  VK+W +S+    + T   H+ +VT+L F  +   L S S LDG
Sbjct: 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDG 178

Query: 414 TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLL-DI 472
           T++ WDL   +   T     +    SLA    G ++ A       I +W + TG+LL   
Sbjct: 179 TIKLWDLRTGKPLSTLAG-HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRST 237

Query: 473 LSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFP-HTHDVLTVVYRPDG 531
           LSGH   V    FSP  + LAS S D T+RLW++      + +   H+  VL+V + PDG
Sbjct: 238 LSGHSDSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDG 296

Query: 532 RQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSA 591
           + LA  + DG +  WD   G+L+ ++                           ++L +S 
Sbjct: 297 KLLASGSSDGTVRLWDLETGKLLSSL------------------TLKGHEGPVSSLSFSP 338

Query: 592 DGSYILAGGSS-KYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMD 646
           DGS +++GGS    I ++D+     L+  +   N+     + F     +  +G  D
Sbjct: 339 DGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLS---VSFSPDGRVVSSGSTD 391

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  100 bits (249), Expect = 3e-22
 Identities = 91/407 (22%), Positives = 163/407 (40%), Gaps = 56/407 (13%)

Query: 41  KSKTVTLPVESSSNICRIAV-SPDGTFLLTV--DENQRCHFINLHCHVVLHRVRF--KYP 95
           +    +L     S++ ++A+ SPDG  +L      +      +L     L R        
Sbjct: 98  EKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSES 157

Query: 96  VNAILFSPNGKYIAVGTGK--LVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDS 153
           V ++ FSP+GK +A G+     +++W     K        + TLA   D V++L +SPD 
Sbjct: 158 VTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-------PLSTLAGHTDPVSSLAFSPDG 210

Query: 154 NYLLVG-SKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTI 212
             L+   S D  +RL+ +              L GH DSVV  F S D      + + + 
Sbjct: 211 GLLIASGSSDGTIRLWDLSTGKL-----LRSTLSGHSDSVVSSF-SPDG-----SLLASG 259

Query: 213 ARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDY 272
           + D  +  W    +   +      S                             V +  +
Sbjct: 260 SSDGTIRLWDLRSSSSLLRTLSGHSSS---------------------------VLSVAF 292

Query: 273 HRGLDMVVVGFSNGVFGLYQM--PDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQ 330
                ++  G S+G   L+ +     +    L      +++  F+  G+ LV G +  G 
Sbjct: 293 SPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGT 352

Query: 331 LLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEH 390
           + +W+ R+    LK    + +V  +++SPD +++++G+ D  V++W +S+G        H
Sbjct: 353 IRLWDLRT-GKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH 411

Query: 391 TNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQF 437
           T+ VT+L F  +  SL S S D T+R WDL       +F+       
Sbjct: 412 TSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLA 458

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 20/40 (50%), Positives = 25/40 (62%)

Query: 466 TGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN 505
           +G LL  L GH GPV  + FSP    LAS S D T++LW+
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 21/39 (53%), Positives = 25/39 (64%)

Query: 467 GRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN 505
           G+LL  L GH GPV  + FSP    LAS S D TVR+W+
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 55.9 bits (133), Expect = 5e-08
 Identities = 44/235 (18%), Positives = 88/235 (37%), Gaps = 10/235 (4%)

Query: 32  NRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR 91
             + + DL   K +   +   S+    + SPDG+ L +   +      +L     L R  
Sbjct: 221 GTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL 280

Query: 92  F--KYPVNAILFSPNGKYIAVGTG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALN 148
                 V ++ FSP+GK +A G+    V++W     K          TL      V++L+
Sbjct: 281 SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS-----SLTLKGHEGPVSSLS 335

Query: 149 WSPDSNYLLVG-SKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVN 207
           +SPD + L+ G S D  +RL+ ++     + T +    +                TD   
Sbjct: 336 FSPDGSLLVSGGSDDGTIRLWDLRTGKP-LKTLEGHSNVLSVSFSPDGRVVSSGSTDGTV 394

Query: 208 RIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQ 262
           R++ ++    + +     +     +   D +  + G+ +  ++ W L        
Sbjct: 395 RLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVS 449

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 46.2 bits (110), Expect = 6e-07
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 342 ILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVW 376
           +   +GH   V  +A+SPD  LLA+G+DD  V+VW
Sbjct: 4   LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 338 SESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVW 376
           S   +   +GH   V  +A+SPD + LA+G+DD  +K+W
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 16/40 (40%), Positives = 21/40 (52%)

Query: 380 SGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWD 419
           SG    T   HT  VT++ F  +   L S S DGT++ WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.1 bits (102), Expect = 8e-06
 Identities = 17/39 (43%), Positives = 21/39 (53%)

Query: 381 GFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWD 419
           G    T   HT  VT++ F  + + L S S DGTVR WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 47.8 bits (113), Expect = 2e-05
 Identities = 39/145 (26%), Positives = 75/145 (51%), Gaps = 5/145 (3%)

Query: 364 LATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLL-SASLDGTVRAWDLFR 422
           +A+   +  V+VW V+         EH   V ++ + + + +LL S S DG+V+ W + +
Sbjct: 548 VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ 607

Query: 423 YRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRL-LDILSGHEGPVH 481
             +  T  T ++   V   S+ SG  +  G+ D  +++ + ++  +L L  + GH   V 
Sbjct: 608 GVSIGTIKTKANICCVQFPSE-SGRSLAFGSADH-KVYYYDLRNPKLPLCTMIGHSKTVS 665

Query: 482 GLVFSPTNATLASSSWDKTVRLWNV 506
            + F  + +TL SSS D T++LW++
Sbjct: 666 YVRFVDS-STLVSSSTDNTLKLWDL 689

Length = 793

>gnl|CDD|240862 cd12416, RRM4_RBM28_like, RNA recognition motif 4 in RNA-binding protein 28 (RBM28) and similar proteins

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 379 SSGFCFVTFTEHTNAVTALHFMANN 403
           S G+ FV FT H +A+ AL  + NN
Sbjct: 56  SKGYGFVEFTNHEHALKALRALNNN 80

This subfamily corresponds to the RRM4 of RBM28 and Nop4p. RBM28 is a specific nucleolar component of the spliceosomal small nuclear ribonucleoproteins (snRNPs), possibly coordinating their transition through the nucleolus. It specifically associates with U1, U2, U4, U5, and U6 small nuclear RNAs (snRNAs), and may play a role in the maturation of both small nuclear and ribosomal RNAs. RBM28 has four RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and an extremely acidic region between RRM2 and RRM3. The family also includes nucleolar protein 4 (Nop4p or Nop77p) encoded by YPL043W from Saccharomyces cerevisiae. It is an essential nucleolar protein involved in processing and maturation of 27S pre-rRNA and biogenesis of 60S ribosomal subunits. Nop4p also contains four RRMs. . Length = 98

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 131 FELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLF 168
            EL++TL      VT++ +SPD  YL  GS D  ++L+
Sbjct: 2   GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 131 FELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLF 168
            +L+RTL      VT++ +SPD N L  GS D  VR++
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 518 HTHDVLTVVYRPDGRQLACSTLDGQIHFWD 547
           HT  V +V + PDG+ LA  + DG I  WD
Sbjct: 11  HTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 518 HTHDVLTVVYRPDGRQLACSTLDGQIHFWD 547
           HT  V +V + PDG  LA  + DG +  WD
Sbjct: 10  HTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	860
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.98
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG1963	792	consensus WD40 repeat protein [General function pr	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG2096	420	consensus WD40 repeat protein [General function pr	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.95
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.95
KOG0646	476	consensus WD40 repeat protein [General function pr	99.95
KOG2055	514	consensus WD40 repeat protein [General function pr	99.95
KOG2055	514	consensus WD40 repeat protein [General function pr	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG1963	792	consensus WD40 repeat protein [General function pr	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.93
KOG1273	405	consensus WD40 repeat protein [General function pr	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.92
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.9
KOG0267	825	consensus Microtubule severing protein katanin p80	99.9
KOG0267	825	consensus Microtubule severing protein katanin p80	99.9
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.9
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.9
COG2319	466	FOG: WD40 repeat [General function prediction only	99.89
PF04192	237	Utp21: Utp21 specific WD40 associated putative dom	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.89
COG2319	466	FOG: WD40 repeat [General function prediction only	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.89
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.88
KOG4328	498	consensus WD40 protein [Function unknown]	99.88
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.88
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.88
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.88
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.87
KOG4328	498	consensus WD40 protein [Function unknown]	99.87
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.87
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.87
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.87
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.86
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.86
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.86
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.85
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.85
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.85
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.85
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.85
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.84
KOG4547	541	consensus WD40 repeat-containing protein [General	99.84
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.83
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.83
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.83
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.82
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.82
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.82
KOG0649	325	consensus WD40 repeat protein [General function pr	99.81
KOG1188	376	consensus WD40 repeat protein [General function pr	99.81
PRK11028	330	6-phosphogluconolactonase; Provisional	99.81
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.81
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.81
COG4946	668	Uncharacterized protein related to the periplasmic	99.81
PRK11028	330	6-phosphogluconolactonase; Provisional	99.81
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.81
KOG4227	609	consensus WD40 repeat protein [General function pr	99.8
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.8
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.79
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.79
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.78
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.78
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.78
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.78
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.78
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.78
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.77
PRK01742	429	tolB translocation protein TolB; Provisional	99.77
KOG1188	376	consensus WD40 repeat protein [General function pr	99.77
KOG4227	609	consensus WD40 repeat protein [General function pr	99.77
KOG0649	325	consensus WD40 repeat protein [General function pr	99.77
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.76
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.76
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.76
KOG2139	445	consensus WD40 repeat protein [General function pr	99.75
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.75
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.75
KOG1310	758	consensus WD40 repeat protein [General function pr	99.74
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.74
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.74
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.74
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.74
KOG2315	566	consensus Predicted translation initiation factor	99.73
COG4946	668	Uncharacterized protein related to the periplasmic	99.73
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.73
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.73
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.72
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.72
PRK01742	429	tolB translocation protein TolB; Provisional	99.72
PRK03629	429	tolB translocation protein TolB; Provisional	99.72
KOG2315	566	consensus Predicted translation initiation factor	99.71
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.71
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.71
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.7
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.7
KOG2139	445	consensus WD40 repeat protein [General function pr	99.7
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.7
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.69
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.69
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.68
KOG1334	559	consensus WD40 repeat protein [General function pr	99.67
PRK05137	435	tolB translocation protein TolB; Provisional	99.67
KOG1334	559	consensus WD40 repeat protein [General function pr	99.67
PRK03629	429	tolB translocation protein TolB; Provisional	99.67
PRK04922	433	tolB translocation protein TolB; Provisional	99.66
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.66
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.66
PRK02889	427	tolB translocation protein TolB; Provisional	99.65
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.63
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.63
PF04003	110	Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A la	99.63
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.63
KOG2321	703	consensus WD40 repeat protein [General function pr	99.63
PRK02889	427	tolB translocation protein TolB; Provisional	99.62
KOG2321	703	consensus WD40 repeat protein [General function pr	99.62
KOG2314	698	consensus Translation initiation factor 3, subunit	99.62
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.62
PRK05137	435	tolB translocation protein TolB; Provisional	99.61
PRK04922	433	tolB translocation protein TolB; Provisional	99.6
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.59
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.59
KOG1310	758	consensus WD40 repeat protein [General function pr	99.59
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.59
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.58
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.57
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.57
PRK04792	448	tolB translocation protein TolB; Provisional	99.55
KOG2314	698	consensus Translation initiation factor 3, subunit	99.54
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.54
PRK00178	430	tolB translocation protein TolB; Provisional	99.54
PRK01029	428	tolB translocation protein TolB; Provisional	99.54
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.53
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.53
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.52
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.51
PRK01029	428	tolB translocation protein TolB; Provisional	99.49
PRK00178	430	tolB translocation protein TolB; Provisional	99.48
PRK04792	448	tolB translocation protein TolB; Provisional	99.48
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.47
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.47
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.46
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.43
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.42
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.41
KOG4547	541	consensus WD40 repeat-containing protein [General	99.32
PRK04043	419	tolB translocation protein TolB; Provisional	99.3
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.27
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.24
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.23
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.23
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.22
PRK04043	419	tolB translocation protein TolB; Provisional	99.19
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.19
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.19
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.15
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.12
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.08
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.08
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	99.08
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.06
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.06
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.05
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.05
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	99.05
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.04
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.04
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.03
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.03
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.02
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.02
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.01
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.01
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.99
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.98
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.98
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.97
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.95
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.93
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.92
PRK02888	635	nitrous-oxide reductase; Validated	98.92
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.91
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.88
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.86
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.85
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.85
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.82
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.82
PRK02888	635	nitrous-oxide reductase; Validated	98.79
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.78
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.76
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.72
KOG2695	425	consensus WD40 repeat protein [General function pr	98.69
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.64
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.64
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.62
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.6
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.56
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.56
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.56
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.56
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.55
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.53
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.52
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.52
KOG3621	726	consensus WD40 repeat-containing protein [General	98.49
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.49
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.48
KOG2695	425	consensus WD40 repeat protein [General function pr	98.45
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.44
COG3391	381	Uncharacterized conserved protein [Function unknow	98.42
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.42
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.41
COG3391	381	Uncharacterized conserved protein [Function unknow	98.39
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.39
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.38
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.33
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.33
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.31
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.31
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.29
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.28
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.25
PRK13616	591	lipoprotein LpqB; Provisional	98.24
KOG3621	726	consensus WD40 repeat-containing protein [General	98.24
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.2
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.18
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.18
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.17
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.17
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.15
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.09
PRK13616	591	lipoprotein LpqB; Provisional	98.07
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.04
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.97
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.91
PF08625	141	Utp13: Utp13 specific WD40 associated domain; Inte	97.9
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.84
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.84
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.79
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.73
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.7
PF09384	148	UTP15_C: UTP15 C terminal; InterPro: IPR018983 Thi	97.7
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.7
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.65
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.64
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.64
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.64
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.64
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.63
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.62
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	97.6
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.54
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.54
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.49
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.49
PF14727	418	PHTB1_N: PTHB1 N-terminus	97.47
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.46
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.37
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.35
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.26
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.23
PHA02713	557	hypothetical protein; Provisional	97.22
PRK10115	686	protease 2; Provisional	97.21
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.2
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.17
KOG2395	644	consensus Protein involved in vacuole import and d	97.16
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.15
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.14
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.12
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.09
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.06
KOG2444	238	consensus WD40 repeat protein [General function pr	97.05
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.04
PRK10115	686	protease 2; Provisional	97.01
KOG2444	238	consensus WD40 repeat protein [General function pr	96.98
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.96
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.91
KOG2395	644	consensus Protein involved in vacuole import and d	96.9
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.85
PHA02713	557	hypothetical protein; Provisional	96.8
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.5
PRK13684	334	Ycf48-like protein; Provisional	96.49
COG5276	370	Uncharacterized conserved protein [Function unknow	96.46
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.43
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.37
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.29
PLN00033	398	photosystem II stability/assembly factor; Provisio	96.25
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.23
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.21
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.15
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	96.14
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.09
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.05
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.95
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.93
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	95.82
PHA03098	534	kelch-like protein; Provisional	95.68
PHA03098	534	kelch-like protein; Provisional	95.63
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.46
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	95.45
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.34
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.31
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.25
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.19
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	95.13
PRK13684	334	Ycf48-like protein; Provisional	95.05
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.04
KOG2247	615	consensus WD40 repeat-containing protein [General	95.02
PHA02790	480	Kelch-like protein; Provisional	94.89
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.8
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.74
PHA02790	480	Kelch-like protein; Provisional	94.73
COG5276	370	Uncharacterized conserved protein [Function unknow	94.62
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	94.51
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.47
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.29
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	94.2
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.2
KOG3616	1636	consensus Selective LIM binding factor [Transcript	94.11
COG5167	776	VID27 Protein involved in vacuole import and degra	93.89
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.88
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.84
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	93.76
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.64
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.38
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	93.03
PLN00033	398	photosystem II stability/assembly factor; Provisio	93.01
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	92.98
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.97
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	92.85
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	92.79
COG5167	776	VID27 Protein involved in vacuole import and degra	92.65
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	92.58
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	92.58
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	92.32
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	92.31
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.16
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	91.96
KOG3616	1636	consensus Selective LIM binding factor [Transcript	91.96
KOG2247	615	consensus WD40 repeat-containing protein [General	91.79
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.74
PF13449	326	Phytase-like: Esterase-like activity of phytase	91.72
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	91.6
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	91.44
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.37
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.29
PRK13613	599	lipoprotein LpqB; Provisional	91.23
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	91.05
PRK13614	573	lipoprotein LpqB; Provisional	91.02
COG1520	370	FOG: WD40-like repeat [Function unknown]	90.9
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	90.89
PRK13615	557	lipoprotein LpqB; Provisional	90.86
COG4590	733	ABC-type uncharacterized transport system, permeas	90.82
PF13449	326	Phytase-like: Esterase-like activity of phytase	90.8
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	90.76
PRK13613	599	lipoprotein LpqB; Provisional	90.47
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	90.3
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.14
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	89.74
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	89.73
COG3292	671	Predicted periplasmic ligand-binding sensor domain	89.5
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	89.38
PLN02193	470	nitrile-specifier protein	89.26
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	89.16
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	88.95
KOG2377	657	consensus Uncharacterized conserved protein [Funct	88.86
PRK13615	557	lipoprotein LpqB; Provisional	88.65
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	88.49
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	87.96

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.1e-121  Score=910.25  Aligned_cols=840  Identities=54%  Similarity=0.915  Sum_probs=792.2

Q ss_pred             CCceecccccccccCCcEEEe-CCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEE
Q 038577            1 MNYRFQNLLGAPYRGGNAVLS-QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFI   79 (860)
Q Consensus         1 ~~~~~~~~~g~~~~~~~~~~s-dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vw   79 (860)
                      ++|+|+|++|++|+.|++.|+ ||..++++.+|+|.++|+++++...+...+...|+++++||+|.+|++..+.|...+.
T Consensus         3 ~efrfsNllGTvyr~Gnl~ft~dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lv   82 (893)
T KOG0291|consen    3 TEFRFSNLLGTVYRAGNLVFTKDGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLV   82 (893)
T ss_pred             cccchhhcccceeecCcEEECCCCCEEEeccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEE
Confidence            479999999999999999999 9999999999999999999999999998999999999999999999999999999999


Q ss_pred             EcccCeEEEEeecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCc-ccceeEEEEEeeccCCCeEEEEEcCCCCeEEE
Q 038577           80 NLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKK-EVFAFELIRTLADCNDKVTALNWSPDSNYLLV  158 (860)
Q Consensus        80 d~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s  158 (860)
                      ++.....++.+.++.+|.|+.|||||+++|++..+.+.||..++... .+.|+.+.+++.+|...|+++.|+.|.++|++
T Consensus        83 s~~~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~  162 (893)
T KOG0291|consen   83 SLLSRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVT  162 (893)
T ss_pred             ecccceeeEEEeecCccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEe
Confidence            99999999999999999999999999999999999999999987655 68899999999999999999999999999999


Q ss_pred             eecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCC
Q 038577          159 GSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSE  238 (860)
Q Consensus       159 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~  238 (860)
                      |+.|.++++|.++.. +.   .....+.+|++.|.++.|..+..     .+++.+.||.+.+|..+...........+.+
T Consensus       163 gsrD~s~rl~~v~~~-k~---~~~~~l~gHkd~VvacfF~~~~~-----~l~tvskdG~l~~W~~~~~P~~~~~~~kd~e  233 (893)
T KOG0291|consen  163 GSRDLSARLFGVDGN-KN---LFTYALNGHKDYVVACFFGANSL-----DLYTVSKDGALFVWTCDLRPPELDKAEKDEE  233 (893)
T ss_pred             ccccceEEEEEeccc-cc---cceEeccCCCcceEEEEeccCcc-----eEEEEecCceEEEEEecCCCccccccccccc
Confidence            999999999999877 33   45788999999999999999998     9999999999999999855433222111100


Q ss_pred             ------CCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEE
Q 038577          239 ------PPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTA  312 (860)
Q Consensus       239 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~  312 (860)
                            ...++........|....+..+...+..+++.+|++..+.|++|..+|.+.+|.+++...++.+.....+|..+
T Consensus       234 g~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~  313 (893)
T KOG0291|consen  234 GSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTV  313 (893)
T ss_pred             ccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEE
Confidence                  01111112233478787788888888999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCC
Q 038577          313 VFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTN  392 (860)
Q Consensus       313 ~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  392 (860)
                      +|+..|.++++++..-|++.||++++...+.+.++|...+++++++|||+++|+|+.||.|++||..++.|..++..|++
T Consensus       314 ~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts  393 (893)
T KOG0291|consen  314 SFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS  393 (893)
T ss_pred             EecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEE
Q 038577          393 AVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDI  472 (860)
Q Consensus       393 ~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~  472 (860)
                      .|+.+.|+..++.+++++.||+|+.||+...++.+++..|.+.+..+++.+|.|..+++|+.|...|++|++++|+++..
T Consensus       394 ~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi  473 (893)
T KOG0291|consen  394 GVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI  473 (893)
T ss_pred             ceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCc
Q 038577          473 LSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGE  552 (860)
Q Consensus       473 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  552 (860)
                      +.||.+||.+++|+|++..|+++|+|.+|++||+-......+...+...+..++|+|||+.||+++-||.|.+||.+.+.
T Consensus       474 LsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~  553 (893)
T KOG0291|consen  474 LSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAV  553 (893)
T ss_pred             hcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhce
Confidence            99999999999999999999999999999999998887788888999999999999999999999999999999999999


Q ss_pred             eeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeecccccccceee
Q 038577          553 LMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVID  632 (860)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  632 (860)
                      ....+++.++..+++...+...+.+++.+++++.+++|+||.++++||....|++|+++++.++++|+...|.+++|..+
T Consensus       554 q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~e  633 (893)
T KOG0291|consen  554 QVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLE  633 (893)
T ss_pred             eeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCCCCCCccccCCCCCccccccccccCccccCCCCCCC-----CCCCCccceeEEEECCCCCeEEEeccccEEE
Q 038577          633 FLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALP-----NRGRPTIQTKCLKIAPTGRNFVAATTEGVLV  707 (860)
Q Consensus       633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-----~~~~~~~~~~~~~~spdg~~~~~~~~~g~~i  707 (860)
                      +++.+.+++.|+++++|.++++++.        +....+||.++     ++.+|...+.++.|||.||.|++++++|+.|
T Consensus       634 fln~rkmtEfG~~~LiD~e~~~~e~--------~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEGl~I  705 (893)
T KOG0291|consen  634 FLNRRKMTEFGNMDLIDTEESDLEG--------RIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEGLLI  705 (893)
T ss_pred             HhccccccccCCccccccccccccc--------cccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccceEE
Confidence            9999999999999999986666654        56677888776     6889999999999999999999999999999


Q ss_pred             EecCCccccCCcccCccCCHHHHHhhcCcCCcHHHHHHHHhcCChHHHHHHhHhcCCCccchhcccCCHHHHHHHHHHHH
Q 038577          708 YSIDESFIFDPTDLDIDVTPEAVDAALNEDQPKRALILSLRLNEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALS  787 (860)
Q Consensus       708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~l~~~~~~~ll~~l~  787 (860)
                      |+++....|+|.+++.+.+|+.++.++.+.+|+++++++|++|+++++.++|+++|+.+|+.....||..+++.||++|.
T Consensus       706 Ysld~~~~FDPf~LD~~vTPe~v~~al~~qey~~AlvmslRLNe~~lI~evlesvp~~~Ie~V~~~Lp~~y~erll~~l~  785 (893)
T KOG0291|consen  706 YSLDTTILFDPFDLDVDVTPESVREALREQEYLKALVMSLRLNEYKLIKEVLESVPIKDIELVASSLPTAYLERLLKALS  785 (893)
T ss_pred             EecCCceEEcccccccccCHHHHHHHHhcchHHHHHHHHHhcCHHHHHHHHHHhCChhhhhhhhhcCcHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCChhhHHHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHhhcC
Q 038577          788 DLLESCPHLEFMLRWCQELCKTHGNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSVG  857 (860)
Q Consensus       788 ~~l~~~~~~~~~~~~l~~~l~~H~~~l~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~  857 (860)
                      +.+++.+|+|+.+.|++.+|..||.++......++++|..|++.+....+.+.+++..|.++|+||.+..
T Consensus       786 ~~l~~s~HieF~l~W~~~il~~hG~~~~~~~~~~~~~~~~lqk~i~r~~~~l~kl~~~Nky~L~~lv~~~  855 (893)
T KOG0291|consen  786 RFLENSPHIEFYLRWLRAILTYHGSSLKRRAETLLPALTSLQKSIVRHIDDLSKLCSLNKYTLRYLVSKR  855 (893)
T ss_pred             HHHhcCchHHHHHHHHHHHHHHhhhhhhccceehhhHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhh
Confidence            9999999999999999999999999999987789999999999999999999999999999999998754

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.1e-72  Score=558.02  Aligned_cols=758  Identities=17%  Similarity=0.265  Sum_probs=588.5

Q ss_pred             ceeccccccccc-CCcEEEe-----CCCEEEeeeCCeEEEEECCCCcEEee--ccCCccCeeEEEEcCCCCEEEEEcCCC
Q 038577            3 YRFQNLLGAPYR-GGNAVLS-----QNTKLISPVGNRVSVTDLIKSKTVTL--PVESSSNICRIAVSPDGTFLLTVDENQ   74 (860)
Q Consensus         3 ~~~~~~~g~~~~-~~~~~~s-----dg~~l~~~~~~~i~v~d~~~~~~~~~--~~~h~~~v~~va~spdg~~la~~~~d~   74 (860)
                      |+..-.+|.+-+ ++++.|-     .|++++.+....|.+||+++|+....  ....+..|+|++-+||.-+||+|..||
T Consensus         8 ye~~~~fgviaS~~aN~~~~~~~~~~Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDG   87 (888)
T KOG0306|consen    8 YEPAAVFGVIASEVANINFVVKRSGKGRAVAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADG   87 (888)
T ss_pred             ccccceeeeeecCccceeEEEeecCCCcEEEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCc
Confidence            444555555554 3344433     49999998989999999999955332  224556899999999999999999999


Q ss_pred             cEEEEEcccCeEEEEee-cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCC
Q 038577           75 RCHFINLHCHVVLHRVR-FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPD  152 (860)
Q Consensus        75 ~i~vwd~~~~~~~~~~~-~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d  152 (860)
                      .|+||+..++....++. |+..|+++.|...|..||+| .|+.|.+||+-....       ..++.||.+.|+..-|..+
T Consensus        88 sVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~G-------l~rL~GHkd~iT~~~F~~~  160 (888)
T KOG0306|consen   88 SVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEG-------LFRLRGHKDSITQALFLNG  160 (888)
T ss_pred             eEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEecccee-------eEEeecchHHHhHHhccCC
Confidence            99999999998888887 99999999999999999999 899999999987764       6889999999999999998


Q ss_pred             CCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCcc
Q 038577          153 SNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDE  232 (860)
Q Consensus       153 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~  232 (860)
                      .+++++.+.|+.|++||+++.      .+..+...|.+.++.+++.+  +     .+++++.|+.+++|++.........
T Consensus       161 ~~~lvS~sKDs~iK~WdL~tq------hCf~Thvd~r~Eiw~l~~~~--~-----~lvt~~~dse~~v~~L~~~~D~~~~  227 (888)
T KOG0306|consen  161 DSFLVSVSKDSMIKFWDLETQ------HCFETHVDHRGEIWALVLDE--K-----LLVTAGTDSELKVWELAFEDDEKET  227 (888)
T ss_pred             CeEEEEeccCceEEEEecccc------eeeeEEecccceEEEEEEec--c-----eEEEEecCCceEEEEeecccccccc
Confidence            899999999999999999998      77889999999999999988  4     8999999999999999443221110


Q ss_pred             ccCCC----CC---CCCC-----------------CCcceeeeEEeeeecc----------------c------------
Q 038577          233 TMEDS----EP---PSPG-----------------TPERRVKKWGLLRKDD----------------F------------  260 (860)
Q Consensus       233 ~~~~~----~~---~~~~-----------------~~~~~~~~~~~~~~~~----------------~------------  260 (860)
                      .....    ..   ...+                 ....-+..+.+.....                .            
T Consensus       228 ~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl  307 (888)
T KOG0306|consen  228 NRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSL  307 (888)
T ss_pred             cccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhH
Confidence            00000    00   0000                 0000111222211100                0            


Q ss_pred             ---------cCCCCceEEEEecCCCCE--EEEEEcCCeEEEEECCCceeE---------EEEeecCceeEEEEEeeCCCE
Q 038577          261 ---------SQAPSKVTACDYHRGLDM--VVVGFSNGVFGLYQMPDFVCI---------HLLSISREKITTAVFNELGNW  320 (860)
Q Consensus       261 ---------~~~~~~v~~~~~~~~~~~--l~~~~~~g~i~~~~~~~~~~~---------~~~~~~~~~i~~~~~s~~~~~  320 (860)
                               ......+.++.+.|.+..  .++-..++.+.+|.++.....         ..+.+|...|.+++++.+...
T Consensus       308 ~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~  387 (888)
T KOG0306|consen  308 SDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSIL  387 (888)
T ss_pred             HHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCcee
Confidence                     001345677777776532  233478888999988652222         456778899999999998877


Q ss_pred             EEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEe
Q 038577          321 LVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFM  400 (860)
Q Consensus       321 l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~  400 (860)
                      ++++++  +.+.+|+..+.++++++...  .+.+..|.|.++++++|...|.+.+||+.+...+.++..|.+.|++++.+
T Consensus       388 ~~Sga~--~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~  463 (888)
T KOG0306|consen  388 LASGAG--ESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLS  463 (888)
T ss_pred             eeecCC--CcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeec
Confidence            776654  89999999999999988654  68899999999999999999999999999999999999999999999999


Q ss_pred             eCCCEEEEEeCCCcEEEEEccccc-----eeeEe------eCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCce
Q 038577          401 ANNHSLLSASLDGTVRAWDLFRYR-----NFRTF------TTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRL  469 (860)
Q Consensus       401 ~~~~~l~s~~~dg~i~~wd~~~~~-----~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~  469 (860)
                      ||+..+++||.|.+|++||+.-..     ..+.+      ...-...+.|+.+||||++||++--|+ ++++|-+.+.+.
T Consensus       464 pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdn-TVkVyflDtlKF  542 (888)
T KOG0306|consen  464 PDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDN-TVKVYFLDTLKF  542 (888)
T ss_pred             CCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccC-eEEEEEecceee
Confidence            999999999999999999974211     11111      122234789999999999999999999 999999999999


Q ss_pred             EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCC
Q 038577          470 LDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPL  549 (860)
Q Consensus       470 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  549 (860)
                      .-.+.||.-||.|+..|||++.++|||.|++|++|-++-|.+...+++|...|.++.|-|+...+++++.|+.|+-||-.
T Consensus       543 flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~  622 (888)
T KOG0306|consen  543 FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGE  622 (888)
T ss_pred             eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeecccccccc
Q 038577          550 NGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDG  629 (860)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~  629 (860)
                      ..+.++.+++|..                    .|++++.+|+|.++++++.|.+|++|.-....++-.-.         
T Consensus       623 kFe~iq~L~~H~~--------------------ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~lEee---------  673 (888)
T KOG0306|consen  623 KFEEIQKLDGHHS--------------------EVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILILEEE---------  673 (888)
T ss_pred             hhhhheeeccchh--------------------eeeeeEEcCCCCeEEeccCCceeEeeeccCcceeeehh---------
Confidence            9999999999986                    59999999999999999999999999987765542111         


Q ss_pred             eeeeccCCCCCCCCCCccccCCCCCccccccccccCccccCCCCCCCCCCCCccceeEEEECCCCCeEEEeccccEEEEe
Q 038577          630 VIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYS  709 (860)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~i~~  709 (860)
                                           .+.+.++.++......-...-||                 +.+|-..+++ ...+.  +
T Consensus       674 ---------------------kE~ErEe~yE~l~~~~e~~~~~~-----------------~~~g~~~~~s-kkTie--S  712 (888)
T KOG0306|consen  674 ---------------------KEGEREEEYETLLASEEVVAGDG-----------------SADGDAGVAS-KKTIE--S  712 (888)
T ss_pred             ---------------------hhhhhHHHHHHhhhhcccccCCC-----------------cccccccchh-hhhhH--H
Confidence                                 01111111110000000000011                 0111111110 00000  0


Q ss_pred             cC-CccccCCcccCccCCHHHHHhhcCcCCcHHHHHHHHhcCChHHHHHHhHhcCCCccchhcccCCHHHHHHHHHHHHh
Q 038577          710 ID-ESFIFDPTDLDIDVTPEAVDAALNEDQPKRALILSLRLNEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSD  788 (860)
Q Consensus       710 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~l~~~~~~~ll~~l~~  788 (860)
                      +. .+.+.+..++..  ......+..+++.+..+++++++.++.++++++|..++.++++.++..||++++..+|+++..
T Consensus       713 vk~aE~i~ea~di~~--~e~~~~ee~~~g~P~npll~a~~ks~e~yi~dtl~~Ir~S~Ld~aLlllPfS~V~~vl~~i~~  790 (888)
T KOG0306|consen  713 VKSAERILEALDIGR--EELTQLEEYSPGHPHNPLLNAYNKSPEKYIVDTLMKIRASELDDALLLLPFSYVLDVLKFIDE  790 (888)
T ss_pred             HHHHHHHHHHHHHHH--HHHHhHHhhcCCCCCcHHHHHhcCCHHHHHHHHHHhcchhhhhhhheeccHHHHHHHHHHHHH
Confidence            00 000000000000  000011111123345799999998888999999999999999999999999999999999999


Q ss_pred             hhccCCChhhHHHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHhhcCC
Q 038577          789 LLESCPHLEFMLRWCQELCKTHGNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSVGA  858 (860)
Q Consensus       789 ~l~~~~~~~~~~~~l~~~l~~H~~~l~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~  858 (860)
                      +++...++||+.+.+-.++|+|..+|.+++ ++++.|++|+..+++..+.+++..|+|+..|.|++..-|
T Consensus       791 ~~q~~~~veLv~rv~~fL~rih~~~it~~~-~~kp~l~~i~s~l~~~v~q~rdv~G~NlagL~~l~~E~e  859 (888)
T KOG0306|consen  791 CIQRKSKVELVCRVLFFLLRIHHKQITAHK-NMKPLLEKIKSKLREIVEQLRDVLGFNLAGLSLLKQEWE  859 (888)
T ss_pred             HHcCCCcceeEeeeeeehhhhhhhhhcccc-chHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhh
Confidence            999999999999999999999999999998 899999999999999999999999999999999987544

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.6e-69  Score=539.62  Aligned_cols=721  Identities=17%  Similarity=0.258  Sum_probs=591.4

Q ss_pred             CceecccccccccCCcEEEe-CCCEEEeeeCCeEEEEECCCCcEE-eec-cCCccCeeEEEEcCCCCEEEEEcCCCcEEE
Q 038577            2 NYRFQNLLGAPYRGGNAVLS-QNTKLISPVGNRVSVTDLIKSKTV-TLP-VESSSNICRIAVSPDGTFLLTVDENQRCHF   78 (860)
Q Consensus         2 ~~~~~~~~g~~~~~~~~~~s-dg~~l~~~~~~~i~v~d~~~~~~~-~~~-~~h~~~v~~va~spdg~~la~~~~d~~i~v   78 (860)
                      +|.....+.++|+||.++|| +|+.|++.+++.|.+-|+++++.. +.. .+....+++++++||+++|++++..+-+++
T Consensus         9 ~ya~ers~epiYtGG~~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv   88 (775)
T KOG0319|consen    9 SYALERSLEPIYTGGPVAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQLLRV   88 (775)
T ss_pred             hhhhhhcccceecCCceeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccceEEE
Confidence            57777889999999999999 999999999999999999999984 222 235567999999999999999999999999


Q ss_pred             EEcccCeEEEEee--cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCC-
Q 038577           79 INLHCHVVLHRVR--FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSN-  154 (860)
Q Consensus        79 wd~~~~~~~~~~~--~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~-  154 (860)
                      |++.+++.++..+  |++||.-++|+|.|.++|+| .|+.++|||+..+.       +.+.+.||.+.|.++.|.|+-. 
T Consensus        89 ~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~-------~th~fkG~gGvVssl~F~~~~~~  161 (775)
T KOG0319|consen   89 WSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY-------CTHSFKGHGGVVSSLLFHPHWNR  161 (775)
T ss_pred             EEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE-------EEEEecCCCceEEEEEeCCccch
Confidence            9999999998887  89999999999999999999 89999999999887       6899999999999999999875 


Q ss_pred             -eEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccc
Q 038577          155 -YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDET  233 (860)
Q Consensus       155 -~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~  233 (860)
                       .|++|+.|+.+++||+....     .+...+..|...|+++.|++|+.     .++++++|..+.+||+..-..     
T Consensus       162 ~lL~sg~~D~~v~vwnl~~~~-----tcl~~~~~H~S~vtsL~~~~d~~-----~~ls~~RDkvi~vwd~~~~~~-----  226 (775)
T KOG0319|consen  162 WLLASGATDGTVRVWNLNDKR-----TCLHTMILHKSAVTSLAFSEDSL-----ELLSVGRDKVIIVWDLVQYKK-----  226 (775)
T ss_pred             hheeecCCCceEEEEEcccCc-----hHHHHHHhhhhheeeeeeccCCc-----eEEEeccCcEEEEeehhhhhh-----
Confidence             48899999999999999661     25788899999999999999998     999999999999999954221     


Q ss_pred             cCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCC-----CCEEEEEEcCCeEEEEECCCceeEEEEeec-Cc
Q 038577          234 MEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRG-----LDMVVVGFSNGVFGLYQMPDFVCIHLLSIS-RE  307 (860)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~-~~  307 (860)
                                              ...-+-...+.++.+-++     +.++++.+.+|.+++|+.+++++....+.. ..
T Consensus       227 ------------------------l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~  282 (775)
T KOG0319|consen  227 ------------------------LKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSE  282 (775)
T ss_pred             ------------------------hheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCch
Confidence                                    111112234556666665     779999999999999999998887655544 33


Q ss_pred             eeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEE-cCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 038577          308 KITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAY-SPDSQLLATGADDNKVKVWTVSSGFCFVT  386 (860)
Q Consensus       308 ~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  386 (860)
                      .+..+...+....+++...+ ..+.+||.++.+....+-+....|..++| .|+.+++++++..+.+++|+..+..+. .
T Consensus       283 e~~~~~~~~~~~~~l~vtae-Qnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-i  360 (775)
T KOG0319|consen  283 EIDHLLAIESMSQLLLVTAE-QNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-I  360 (775)
T ss_pred             hhhcceeccccCceEEEEcc-ceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-E
Confidence            46666555555555555555 89999999999999999998899999987 567789999999999999998877776 7


Q ss_pred             eecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceee---EeeCCCCCcEEEEEECCCC-CEEEEEecCCCeEEEE
Q 038577          387 FTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR---TFTTPSSRQFVSLASDQSG-EVICAGTLDSFEIFVW  462 (860)
Q Consensus       387 ~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~i~v~  462 (860)
                      +.+|...|.++....+|..|++|+.|.++++|.++++....   .....+...+.+++++..+ .++++++.|. ++++|
T Consensus       361 i~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~-tlK~W  439 (775)
T KOG0319|consen  361 IPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDC-TLKLW  439 (775)
T ss_pred             EeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCc-eEEEe
Confidence            88999999999977778899999999999999885443222   1223456678888887665 5777888888 99999


Q ss_pred             ECCCCceE---------EEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCE
Q 038577          463 SMKTGRLL---------DILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQ  533 (860)
Q Consensus       463 d~~~~~~~---------~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  533 (860)
                      ++...+..         .....|...|++++++|+.+++||||.|++.+||+++.......+.+|...|.++.|+|..+.
T Consensus       440 ~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~  519 (775)
T KOG0319|consen  440 DLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQL  519 (775)
T ss_pred             cCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccce
Confidence            99863211         123569999999999999999999999999999999988878888899999999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCc
Q 038577          534 LACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQ  613 (860)
Q Consensus       534 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~  613 (860)
                      +|+++.|++|+||.+.++.++.++.||..                    .|..+.|-.+|+.|++++.||.|++|++.++
T Consensus       520 laT~SgD~TvKIW~is~fSClkT~eGH~~--------------------aVlra~F~~~~~qliS~~adGliKlWnikt~  579 (775)
T KOG0319|consen  520 LATCSGDKTVKIWSISTFSCLKTFEGHTS--------------------AVLRASFIRNGKQLISAGADGLIKLWNIKTN  579 (775)
T ss_pred             eEeccCCceEEEEEeccceeeeeecCccc--------------------eeEeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence            99999999999999999999999999986                    5999999999999999999999999999999


Q ss_pred             eEEEEEeecccccccceeeeccCCCCCCCCCCccccCCCCCccccccccccCccccCCCCCCCCCCCCccceeEEEECCC
Q 038577          614 VLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPT  693 (860)
Q Consensus       614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~spd  693 (860)
                      ++++++.                                                           .|.+.|-++..+|.
T Consensus       580 eC~~tlD-----------------------------------------------------------~H~DrvWaL~~~~~  600 (775)
T KOG0319|consen  580 ECEMTLD-----------------------------------------------------------AHNDRVWALSVSPL  600 (775)
T ss_pred             hhhhhhh-----------------------------------------------------------hccceeEEEeecCc
Confidence            9886442                                                           23457899999999


Q ss_pred             CCeEEEeccccEE-EEecCCccccCCcccC---c-cCCHHHHHhhcCcCCcHHHHHHHHhcCChHHHHHHhH----hcCC
Q 038577          694 GRNFVAATTEGVL-VYSIDESFIFDPTDLD---I-DVTPEAVDAALNEDQPKRALILSLRLNEDNLIKKCIF----AISP  764 (860)
Q Consensus       694 g~~~~~~~~~g~~-i~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~----~~~~  764 (860)
                      +.+|++++.||.+ .|.-..+... .++.+   + ....++....+.+++|.+++..|+.+.-+..+.++++    .-++
T Consensus       601 ~~~~~tgg~Dg~i~~wkD~Te~~~-~ee~~K~~eaieq~QeL~n~l~~~~~~~A~~LA~tLd~P~~~f~vi~~~~r~r~~  679 (775)
T KOG0319|consen  601 LDMFVTGGGDGRIIFWKDVTEEEQ-NEEQEKREEAIEQEQELENLLSQKRYTKAFVLALTLDKPHLVFTVINALYRERDP  679 (775)
T ss_pred             cceeEecCCCeEEEEeecCcHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHhhccCchhHHHHHHHHHhcCCc
Confidence            9999999999977 6753322111 11111   1 1122233344568899999999999977766666655    5557


Q ss_pred             CccchhcccCCHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHhhhhh-hcccchhHHHHHHHHHHHHHHHHHHHHh
Q 038577          765 VDIPAVASSIPYRYMQRLIEALSDLLESCPHLEFMLRWCQELCKTHGNTIQ-QNSRNLLPSLKSLQKSITRIHQDLADTC  843 (860)
Q Consensus       765 ~~i~~~~~~l~~~~~~~ll~~l~~~l~~~~~~~~~~~~l~~~l~~H~~~l~-~~~~~~~~~l~~l~~~~~~~~~~l~~~~  843 (860)
                      .++..++.+|..+....||++...|=.+.++-..+|+.|..+|+.|-..=. .-+ -..+.++.|.--.++..++++.+.
T Consensus       680 e~l~~av~~L~~dq~~~Ll~~~~~WnTnsk~c~vaQ~vL~~~l~~~~p~el~~~~-g~~~~~e~l~PYtqRHf~Rid~~~  758 (775)
T KOG0319|consen  680 EELGQAVFRLNEDQPEALLQFVVKWNTNSKTCHVAQRVLYEILKRVDPEELVRWP-GSGEVVEALLPYTQRHFRRIDRLV  758 (775)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHhcCCcchhHHHHHHHHHHHhccChHHhhccc-chHHHHHhhhhHHHHHHHHHHHHh
Confidence            889999999999999999999999998889999999999999999854332 222 455666777777777777777665


Q ss_pred             hccHHHHHHH
Q 038577          844 SSNEYMLQYL  853 (860)
Q Consensus       844 ~~~~~~l~~~  853 (860)
                      .. .++|.|+
T Consensus       759 ~~-~~lLdf~  767 (775)
T KOG0319|consen  759 QD-SALLDFT  767 (775)
T ss_pred             hh-hHHHHHh
Confidence            53 2455554

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=3.1e-61  Score=486.61  Aligned_cols=717  Identities=19%  Similarity=0.255  Sum_probs=562.0

Q ss_pred             CCCEEEEEcCCCcEEEEEcccCeEEEEee-cCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccC
Q 038577           63 DGTFLLTVDENQRCHFINLHCHVVLHRVR-FKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCN  141 (860)
Q Consensus        63 dg~~la~~~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~  141 (860)
                      .+.++++.+-+....+||...-..+..-+ +...|+|++=.  ..++.++..+.|.+|....-        ....+.+|.
T Consensus        45 ~~~~~vtt~vgksfqvYd~~kl~ll~vs~~lp~~I~alas~--~~~vy~A~g~~i~~~~rgk~--------i~~~~~~~~  114 (910)
T KOG1539|consen   45 GSTFYVTTCVGKSFQVYDVNKLNLLFVSKPLPDKITALASD--KDYVYVASGNKIYAYARGKH--------IRHTTLLHG  114 (910)
T ss_pred             CceEEEEEecCceEEEEeccceEEEEecCCCCCceEEEEec--CceEEEecCcEEEEEEccce--------EEEEecccc
Confidence            45677788888999999999888777664 78889998875  45666667788888864422        356677888


Q ss_pred             CCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEe
Q 038577          142 DKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSW  221 (860)
Q Consensus       142 ~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w  221 (860)
                      ..|.-+.  |-|.+++++..++.+.||+.....+... .....+....+.|+++. +|...   .+.++.|+.+|.+.+|
T Consensus       115 a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~e~~-l~~~~~~~~~~~Ital~-HP~TY---LNKIvvGs~~G~lql~  187 (910)
T KOG1539|consen  115 AKVHLLL--PFGEHLIAVDISNILFVWKTSSIQEELY-LQSTFLKVEGDFITALL-HPSTY---LNKIVVGSSQGRLQLW  187 (910)
T ss_pred             ceEEEEe--eecceEEEEEccCcEEEEEecccccccc-ccceeeeccCCceeeEe-cchhh---eeeEEEeecCCcEEEE
Confidence            7777665  4477899999999999999987411111 11222333333377664 44432   3489999999999999


Q ss_pred             eecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEE
Q 038577          222 GFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHL  301 (860)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~  301 (860)
                      ++.++..                            ...+.+..+.|+++.-+|--+.+++|..+|.|.+++++.++.+.+
T Consensus       188 Nvrt~K~----------------------------v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~s  239 (910)
T KOG1539|consen  188 NVRTGKV----------------------------VYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMS  239 (910)
T ss_pred             EeccCcE----------------------------EEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEE
Confidence            9998643                            455667778999999999999999999999999999999999999


Q ss_pred             EeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEec-CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 038577          302 LSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQ-GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS  380 (860)
Q Consensus       302 ~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  380 (860)
                      ++...++|++++|..||+.+++++...|.+.+||++..+.+.... .|.+.|....|.|....+++++.|+.+++|-.++
T Consensus       240 Fk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~  319 (910)
T KOG1539|consen  240 FKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDS  319 (910)
T ss_pred             EEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeC
Confidence            999999999999999999999998888999999999998887775 7889999999999999999999999998886553


Q ss_pred             --C--eeEEEeecCCCceEEEEEe-eCCCEEEEEeCCCcEEEEEccc---------------------------------
Q 038577          381 --G--FCFVTFTEHTNAVTALHFM-ANNHSLLSASLDGTVRAWDLFR---------------------------------  422 (860)
Q Consensus       381 --~--~~~~~~~~~~~~v~~i~~~-~~~~~l~s~~~dg~i~~wd~~~---------------------------------  422 (860)
                        |  +.++.-.+|..+..++.|. .++..+.+++.|++++.+++..                                 
T Consensus       320 ~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~  399 (910)
T KOG1539|consen  320 GDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIV  399 (910)
T ss_pred             CCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcce
Confidence              3  5566778999999999997 6788999999999888876510                                 


Q ss_pred             --------------------------------cce-eeEeeCC----CCCcEEEEEECCCCCEEEEEecCCCeEEEEECC
Q 038577          423 --------------------------------YRN-FRTFTTP----SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK  465 (860)
Q Consensus       423 --------------------------------~~~-~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~  465 (860)
                                                      ... ...+...    ....+.+++.+++|++.++|...| .|.+|+++
T Consensus       400 ~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G-~Id~fNmQ  478 (910)
T KOG1539|consen  400 EFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKG-TIDRFNMQ  478 (910)
T ss_pred             eeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCC-eEEEEEcc
Confidence                                            000 0011111    224678999999999999999998 99999999


Q ss_pred             CCceEEEe---cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCe
Q 038577          466 TGRLLDIL---SGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQ  542 (860)
Q Consensus       466 ~~~~~~~~---~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  542 (860)
                      +|-....+   +.|.++|++++...-++.+++++.+|.+++||..... ..........++.+..+.....++.+.+|-.
T Consensus       479 SGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~  557 (910)
T KOG1539|consen  479 SGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV-LKKSLRLGSSITGIVYHRVSDLLAIALDDFS  557 (910)
T ss_pred             cCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc-eeeeeccCCCcceeeeeehhhhhhhhcCcee
Confidence            99999888   5899999999998889999999999999999998776 4455566778899999999999999999999


Q ss_pred             EEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeec
Q 038577          543 IHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQIT  622 (860)
Q Consensus       543 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~  622 (860)
                      |.++|..+.+.++.+.+|.+                    .|++++|||||+||++++.|++|++||+.++.++..+...
T Consensus       558 I~vvD~~t~kvvR~f~gh~n--------------------ritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd  617 (910)
T KOG1539|consen  558 IRVVDVVTRKVVREFWGHGN--------------------RITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD  617 (910)
T ss_pred             EEEEEchhhhhhHHhhcccc--------------------ceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC
Confidence            99999999999999999986                    5999999999999999999999999999999999988765


Q ss_pred             c---cccccceeeeccCCCCCCCC-------------CCccccC-----------------CCCCcccc------ccccc
Q 038577          623 H---NLSLDGVIDFLNSKNMTEAG-------------PMDLIDD-----------------DNSDTEEG------VEKQT  663 (860)
Q Consensus       623 ~---~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~-----------------~~~~~~~~------~~~~~  663 (860)
                      .   ++++++.++++...+....|             +...++.                 ++.+..+.      .....
T Consensus       618 ~~~~sls~SPngD~LAT~Hvd~~gIylWsNkslF~~vs~r~~~~~~~~~~v~lPst~~~~d~e~~~~tLE~~~e~i~y~~  697 (910)
T KOG1539|consen  618 SPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSLFKSVSTRAIPADYVPSWVMLPSTCDEDDDEDDEVTLESNDEDIKYSS  697 (910)
T ss_pred             CcceeeEECCCCCEEEEEEecCceEEEEEchhHheeccccccCcccccceeecCcccccccchhhhhhhhccccccccCC
Confidence            4   45666666666655544333             0000000                 00000000      00001


Q ss_pred             cCccccC------CC----------CCCCCCCCCccceeEEEECCCCCeEEEeccc--cEEEEecCCccccCCcccCccC
Q 038577          664 RGKLDYD------LP----------GALPNRGRPTIQTKCLKIAPTGRNFVAATTE--GVLVYSIDESFIFDPTDLDIDV  725 (860)
Q Consensus       664 ~~~~~~~------~~----------g~~~~~~~~~~~~~~~~~spdg~~~~~~~~~--g~~i~~~~~~~~~~~~~~~~~~  725 (860)
                      ..+++..      +|          ..+++||||+++|+.++-+|    |++++..  |.+...      ....+++. .
T Consensus       698 ~eQldeeLvTlS~lp~Srwq~Ll~LelIk~RnkPke~PK~pkkaP----FFLp~~~s~g~v~e~------~~~~~~~~-~  766 (910)
T KOG1539|consen  698 PEQLDEELVTLSKLPRSRWQNLLNLELIKKRNKPKEPPKKPKKAP----FFLPKVPSEGLVLET------PAAEELNK-E  766 (910)
T ss_pred             hhHhChhhhhhccCcHHHhhhcccHHHHHhcCCCCCCCCccccCC----cccccCCcccccccC------cchhhhcc-h
Confidence            1111111      11          23458999999999999999    8888543  433110      11111111 1


Q ss_pred             CHHHHHhhcC----cCCcHHHHHHHHhcCChHHHHHHhHhcCCCccchhcccC-----CHHHHHHHHHHHHhhhccCCCh
Q 038577          726 TPEAVDAALN----EDQPKRALILSLRLNEDNLIKKCIFAISPVDIPAVASSI-----PYRYMQRLIEALSDLLESCPHL  796 (860)
Q Consensus       726 ~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~l-----~~~~~~~ll~~l~~~l~~~~~~  796 (860)
                      ..++.-+.+.    +.+|.+.|.++..++++..++++|+.++|+.|+.+++.|     |.+.++.|+++|..+|.+++||
T Consensus       767 ~~~~~ik~~~~L~~es~F~~~Lre~~~s~~~~~~~~~L~~~~psaiD~eiRsL~d~~~~~~~~~~Fi~~l~~~l~~k~nF  846 (910)
T KOG1539|consen  767 EDENKIKKLGLLELESSFTTLLREGKDSKDFLDAFALLKNLSPSAIDFEIRSLNDAGETIEEMVIFIKMLTQMLKTKRNF  846 (910)
T ss_pred             hhhhhhhccccccccchHHHHHhhccccccHHHHHHHHHhcCcchheeehhhhhccCcchHHHHHHHHHHHHHhccccCH
Confidence            2222222222    567888888899999999999999999999999999999     5888999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhhhhhcc--cchhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHhhcC
Q 038577          797 EFMLRWCQELCKTHGNTIQQNS--RNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSVG  857 (860)
Q Consensus       797 ~~~~~~l~~~l~~H~~~l~~~~--~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~  857 (860)
                      ||+|+|+..|+|.|+..|..++  +++.+.|+++.+.+.+.|++|++++.++.|+|.|+++.+
T Consensus       847 EL~qa~~slf~K~H~~~l~~~~~~~dl~e~l~~~~~v~~e~wq~le~l~~~~mgvl~~l~nal  909 (910)
T KOG1539|consen  847 ELVQAYMSLFLKSHGLVLWNHEGPEDLTEELQNWEEVQSEEWQRLEELFLYCMGVLAFLKNAL  909 (910)
T ss_pred             HHHHHHHHHHHHhhhhhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHhhcc
Confidence            9999999999999999997653  269999999999999999999999999999999999864

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2e-58  Score=460.41  Aligned_cols=534  Identities=21%  Similarity=0.277  Sum_probs=459.1

Q ss_pred             CcEEEe-CCCEEEeeeCC-eEEEEECCCCcEEeeccC-CccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee-
Q 038577           16 GNAVLS-QNTKLISPVGN-RVSVTDLIKSKTVTLPVE-SSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-   91 (860)
Q Consensus        16 ~~~~~s-dg~~l~~~~~~-~i~v~d~~~~~~~~~~~~-h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~-   91 (860)
                      -+++++ |+++|+++..+ -+++|++.+++....... |.++|.-++|+|.|..||+|+.|+.++|||+..+.+.+.++ 
T Consensus        66 ta~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG  145 (775)
T KOG0319|consen   66 TALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKG  145 (775)
T ss_pred             heeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecC
Confidence            367888 99999998775 499999999998877766 99999999999999999999999999999999999999999 


Q ss_pred             cCCceeEEEECCCCC--EEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEE
Q 038577           92 FKYPVNAILFSPNGK--YIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLF  168 (860)
Q Consensus        92 ~~~~v~~~~fspdg~--~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vw  168 (860)
                      |++.|.++.|.|+-.  .|++| .|+.+++||+.....      ++..+..|.+.|++++|++|+..+++++.|..+.+|
T Consensus       146 ~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t------cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vw  219 (775)
T KOG0319|consen  146 HGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT------CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVW  219 (775)
T ss_pred             CCceEEEEEeCCccchhheeecCCCceEEEEEcccCch------HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEe
Confidence            899999999999764  46777 899999999997764      567888999999999999999999999999999999


Q ss_pred             eecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcce
Q 038577          169 YVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERR  248 (860)
Q Consensus       169 d~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (860)
                      |+...      ....++ .-...+.++.+.+++...+..+++++|.+|.++.||.++.......                
T Consensus       220 d~~~~------~~l~~l-p~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~----------------  276 (775)
T KOG0319|consen  220 DLVQY------KKLKTL-PLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQ----------------  276 (775)
T ss_pred             ehhhh------hhhhee-chhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhh----------------
Confidence            99655      223333 3345567777777722222239999999999999999886541111                


Q ss_pred             eeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEe-eCCCEEEEEEcc
Q 038577          249 VKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFN-ELGNWLVFGCAK  327 (860)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~~  327 (860)
                                ..+. ...+..+...+....++..+.+.++.+||.++.+....+-+..+.|..++|- |+.+.+++++..
T Consensus       277 ----------~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs  345 (775)
T KOG0319|consen  277 ----------RQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNS  345 (775)
T ss_pred             ----------ccCC-chhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCC
Confidence                      1111 2236666677777788888999999999999999999999999999999986 566777777665


Q ss_pred             CCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eeEEEeecCCCceEEEEEeeCC
Q 038577          328 LGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSG----FCFVTFTEHTNAVTALHFMANN  403 (860)
Q Consensus       328 ~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~~  403 (860)
                       +.+++|+..+..+. .+.+|...|.++....+|.+|++|+.|.++++|.++.+    .++....+|.+.|.+++++..+
T Consensus       346 -~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~  423 (775)
T KOG0319|consen  346 -PELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLG  423 (775)
T ss_pred             -CceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccC
Confidence             99999998887766 67899999999997778889999999999999988543    3455667899999999998765


Q ss_pred             -CEEEEEeCCCcEEEEEccccceeeE--------eeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec
Q 038577          404 -HSLLSASLDGTVRAWDLFRYRNFRT--------FTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS  474 (860)
Q Consensus       404 -~~l~s~~~dg~i~~wd~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~  474 (860)
                       .+|+++|.|+++++|++...+....        ....+...+.+++++|+.+++|+|+.|. +.++|++.......++.
T Consensus       424 asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDk-taKiW~le~~~l~~vLs  502 (775)
T KOG0319|consen  424 ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDK-TAKIWDLEQLRLLGVLS  502 (775)
T ss_pred             ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccccc-ceeeecccCceEEEEee
Confidence             6899999999999999987332211        1234566899999999999999999999 99999999999999999


Q ss_pred             CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcee
Q 038577          475 GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELM  554 (860)
Q Consensus       475 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  554 (860)
                      ||...|.++.|+|..+.++|+|.|++|+||.+.+..++..+.+|...|..+.|-.+|..|++++.||.+++|++++++++
T Consensus       503 GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~  582 (775)
T KOG0319|consen  503 GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECE  582 (775)
T ss_pred             CCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 038577          555 YTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVAD  612 (860)
Q Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~  612 (860)
                      .+++.|++                    .|++++-+|.+.++++|+.||.|.+|.=.+
T Consensus       583 ~tlD~H~D--------------------rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  583 MTLDAHND--------------------RVWALSVSPLLDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             hhhhhccc--------------------eeEEEeecCccceeEecCCCeEEEEeecCc
Confidence            99999998                    599999999999999999999999996444

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=8.6e-54  Score=410.24  Aligned_cols=537  Identities=15%  Similarity=0.225  Sum_probs=437.8

Q ss_pred             ceecccccccc---cCCcEEEe---CCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcE
Q 038577            3 YRFQNLLGAPY---RGGNAVLS---QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRC   76 (860)
Q Consensus         3 ~~~~~~~g~~~---~~~~~~~s---dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i   76 (860)
                      |++...+.++-   ++-.+.++   .|+.|+|+.+..|.+-++++........+|...++-..|||.|-|+|+|+..|+|
T Consensus         4 ~~lk~~~~~lPst~Rg~~~~ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~v   83 (603)
T KOG0318|consen    4 YELKETFASLPSTERGVPIIIGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKV   83 (603)
T ss_pred             hhhhhhccCCCcccCCcceEeccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcE
Confidence            55555554443   44456666   7899999999999999999999888888999999999999999999999999999


Q ss_pred             EEEEcccCeEE--EEee-cCCceeEEEECCCCCEEEEEeC-----CeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEE
Q 038577           77 HFINLHCHVVL--HRVR-FKYPVNAILFSPNGKYIAVGTG-----KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALN  148 (860)
Q Consensus        77 ~vwd~~~~~~~--~~~~-~~~~v~~~~fspdg~~la~~~~-----~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~  148 (860)
                      +|||....+.+  .+++ ..++|.+++|++|+++|++.++     +.+..||..+.         +-.+.||...|.+++
T Consensus        84 RIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~S---------vGei~GhSr~ins~~  154 (603)
T KOG0318|consen   84 RIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNS---------VGEITGHSRRINSVD  154 (603)
T ss_pred             EEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCc---------cceeeccceeEeeee
Confidence            99998764333  3344 7899999999999998887743     35666765543         467899999999999


Q ss_pred             EcCCCC-eEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCC
Q 038577          149 WSPDSN-YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGND  227 (860)
Q Consensus       149 ~s~d~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  227 (860)
                      |-|.-. ++++|++|+.|.+|+-..-      +-...+..|...|.++.|+|||.     ++++++.||.+.+||-.+++
T Consensus       155 ~KpsRPfRi~T~sdDn~v~ffeGPPF------KFk~s~r~HskFV~~VRysPDG~-----~Fat~gsDgki~iyDGktge  223 (603)
T KOG0318|consen  155 FKPSRPFRIATGSDDNTVAFFEGPPF------KFKSSFREHSKFVNCVRYSPDGS-----RFATAGSDGKIYIYDGKTGE  223 (603)
T ss_pred             ccCCCceEEEeccCCCeEEEeeCCCe------eeeecccccccceeeEEECCCCC-----eEEEecCCccEEEEcCCCcc
Confidence            999764 6999999999999975443      45667788999999999999999     99999999999999988865


Q ss_pred             CCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCc
Q 038577          228 GKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISRE  307 (860)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~  307 (860)
                      .                      ...   ...-.+|.+.|.+++|+||+..+++.+.|.++++||+.+.+.++++.....
T Consensus       224 ~----------------------vg~---l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~  278 (603)
T KOG0318|consen  224 K----------------------VGE---LEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST  278 (603)
T ss_pred             E----------------------EEE---ecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCc
Confidence            3                      111   112447899999999999999999999999999999999999988876543


Q ss_pred             ---eeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE
Q 038577          308 ---KITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCF  384 (860)
Q Consensus       308 ---~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  384 (860)
                         ....+.|.  +..|++.+.. |.|.+++.........+.+|...|++++.+|++++|++|+.||.|.-|+..++..-
T Consensus       279 v~dqqvG~lWq--kd~lItVSl~-G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~  355 (603)
T KOG0318|consen  279 VEDQQVGCLWQ--KDHLITVSLS-GTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD  355 (603)
T ss_pred             hhceEEEEEEe--CCeEEEEEcC-cEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence               33344444  5667777666 99999999999988899999999999999999999999999999999999988766


Q ss_pred             EEe-ecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEE
Q 038577          385 VTF-TEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWS  463 (860)
Q Consensus       385 ~~~-~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d  463 (860)
                      +.. ..|...|.+++.+..+ .+++++.|.++++.++...........+-..+..+++..+++.++++.+..+  |.+..
T Consensus       356 ~~~g~~h~nqI~~~~~~~~~-~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~--iv~l~  432 (603)
T KOG0318|consen  356 RLAGKGHTNQIKGMAASESG-ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISD--IVLLQ  432 (603)
T ss_pred             ccccccccceEEEEeecCCC-cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCc--EEEEe
Confidence            544 6799999999987644 6889999999999998665544443233344567999999998888888775  55544


Q ss_pred             CCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcc--eeEEcccCCCeEEEEEeeCCCEEEEEeCCC
Q 038577          464 MKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKG--SVESFPHTHDVLTVVYRPDGRQLACSTLDG  541 (860)
Q Consensus       464 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  541 (860)
                      -.++  +.... -.-...+++++|++..++.|+.||.|++|.+.....  ......|.++|+++++|||+.+||++...+
T Consensus       433 ~~~~--~~~~~-~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~r  509 (603)
T KOG0318|consen  433 DQTK--VSSIP-IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASR  509 (603)
T ss_pred             cCCc--ceeec-cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCC
Confidence            2222  22222 234568899999999999999999999999987653  334568999999999999999999999999


Q ss_pred             eEEEEeCCCCceeEEEec-ccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCc
Q 038577          542 QIHFWDPLNGELMYTIEG-RRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQ  613 (860)
Q Consensus       542 ~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~  613 (860)
                      .+.+||+.+.+.....-+ |.                    ..|.+++|||+.+++++|+-|-+|.||+++..
T Consensus       510 kvv~yd~~s~~~~~~~w~FHt--------------------akI~~~aWsP~n~~vATGSlDt~Viiysv~kP  562 (603)
T KOG0318|consen  510 KVVLYDVASREVKTNRWAFHT--------------------AKINCVAWSPNNKLVATGSLDTNVIIYSVKKP  562 (603)
T ss_pred             cEEEEEcccCceecceeeeee--------------------eeEEEEEeCCCceEEEeccccceEEEEEccCh
Confidence            999999999887433322 33                    35999999999999999999999999999764

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7.6e-51  Score=406.50  Aligned_cols=563  Identities=18%  Similarity=0.284  Sum_probs=453.1

Q ss_pred             eEEEEcCCCCEEEEEcCCCcEEEEEcccCeEE-EEeecCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEE
Q 038577           56 CRIAVSPDGTFLLTVDENQRCHFINLHCHVVL-HRVRFKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFEL  133 (860)
Q Consensus        56 ~~va~spdg~~la~~~~d~~i~vwd~~~~~~~-~~~~~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~  133 (860)
                      -.+.|+|||.-+++-. .++|.++|+.+.+.. ..+.+...|++++.||+|.++.+. ..|...+-++....       .
T Consensus        18 Gnl~ft~dG~sviSPv-GNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~-------V   89 (893)
T KOG0291|consen   18 GNLVFTKDGNSVISPV-GNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRS-------V   89 (893)
T ss_pred             CcEEECCCCCEEEecc-CCEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccce-------e
Confidence            4688999999888744 478999999876544 334588999999999999998888 56666666655433       2


Q ss_pred             EEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeeccccc--CcccccceEeecCCCcEEEEEEccCCCCCccceEEE
Q 038577          134 IRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLK--GIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYT  211 (860)
Q Consensus       134 ~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~--~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s  211 (860)
                      ++.+. .+.+|.++.|||||+++|.+.. +.+.||......+  -.+.....+..+|-..|.++.|+.|.+     +|++
T Consensus        90 lh~f~-fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr-----~l~~  162 (893)
T KOG0291|consen   90 LHRFN-FKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR-----LLVT  162 (893)
T ss_pred             eEEEe-ecCccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc-----eEEe
Confidence            33333 4678999999999999888865 5899999876633  222234567789999999999999999     9999


Q ss_pred             EcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEE
Q 038577          212 IARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLY  291 (860)
Q Consensus       212 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~  291 (860)
                      +++|.+.++|.++....                          .....+.+|...|..+-|..+...+++.+.||.+.+|
T Consensus       163 gsrD~s~rl~~v~~~k~--------------------------~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W  216 (893)
T KOG0291|consen  163 GSRDLSARLFGVDGNKN--------------------------LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVW  216 (893)
T ss_pred             ccccceEEEEEeccccc--------------------------cceEeccCCCcceEEEEeccCcceEEEEecCceEEEE
Confidence            99999999999986432                          2356678899999999999999999999999999999


Q ss_pred             ECCC-----------------------cee-----------EEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc
Q 038577          292 QMPD-----------------------FVC-----------IHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR  337 (860)
Q Consensus       292 ~~~~-----------------------~~~-----------~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~  337 (860)
                      ....                       ++.           ..-+......+++.+|++.-+.++++-.. |...+|++.
T Consensus       217 ~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFss-G~f~LyelP  295 (893)
T KOG0291|consen  217 TCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSS-GEFGLYELP  295 (893)
T ss_pred             EecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecC-CeeEEEecC
Confidence            8750                       111           11122233678999999988888888776 999999999


Q ss_pred             CceEEEEecCcccCeEEEEEcCCCCEEEEEeCC-CcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEE
Q 038577          338 SESYILKQQGHYFDVNCLAYSPDSQLLATGADD-NKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVR  416 (860)
Q Consensus       338 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~  416 (860)
                      ....+..+.-...+|..++|+..|..||.|+.. |.+-||+.++...+...++|...+++++++|||+++++|+.||.|+
T Consensus       296 ~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVK  375 (893)
T KOG0291|consen  296 DFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVK  375 (893)
T ss_pred             CceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEE
Confidence            999999887777889999999999999998874 7999999999999999999999999999999999999999999999


Q ss_pred             EEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCc-ccCeEEEEEcCCCCEEEEE
Q 038577          417 AWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGH-EGPVHGLVFSPTNATLASS  495 (860)
Q Consensus       417 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~  495 (860)
                      +||..++-|+.++..+.. .++.+.|+..|+.+++++-|| +|+.||+...+..+++... .-...|++..|.|..++.|
T Consensus       376 vWn~~SgfC~vTFteHts-~Vt~v~f~~~g~~llssSLDG-tVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG  453 (893)
T KOG0291|consen  376 VWNTQSGFCFVTFTEHTS-GVTAVQFTARGNVLLSSSLDG-TVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAG  453 (893)
T ss_pred             EEeccCceEEEEeccCCC-ceEEEEEEecCCEEEEeecCC-eEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEee
Confidence            999999999999987654 799999999999999999999 9999999999999988754 3446788999999999999


Q ss_pred             eCCC-cEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCC-ceeEEEecccccCCCccccccc
Q 038577          496 SWDK-TVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNG-ELMYTIEGRRDISGGRLMTDRR  573 (860)
Q Consensus       496 ~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~  573 (860)
                      +.|. .|++|++++|+.+-.+.+|.++|.+++|+|++..|++++.|.+|++||+-.. ..+.+++..++           
T Consensus       454 ~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sd-----------  522 (893)
T KOG0291|consen  454 AQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSD-----------  522 (893)
T ss_pred             ccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccc-----------
Confidence            8886 5999999999988888899999999999999999999999999999998544 45556665554           


Q ss_pred             cccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeecccccccceeeeccCCCCCCCCCCccccCCCC
Q 038577          574 SAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNS  653 (860)
Q Consensus       574 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  653 (860)
                                +..++|+|||+.|+++.-||.|.+||...+..+..+.        |..+....+....            
T Consensus       523 ----------vl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Id--------grkD~~~gR~~~D------------  572 (893)
T KOG0291|consen  523 ----------VLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSID--------GRKDLSGGRKETD------------  572 (893)
T ss_pred             ----------eeEEEEcCCCCeEEEEEecceEEEEEhhhceeecccc--------chhhccccccccc------------
Confidence                      8999999999999999999999999999987765332        2211111110000            


Q ss_pred             CccccccccccCccccCCCCCCCCCCCCccceeEEEECCCCCeEEEecccc-EEEEecCCccccCCcccC
Q 038577          654 DTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEG-VLVYSIDESFIFDPTDLD  722 (860)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g-~~i~~~~~~~~~~~~~~~  722 (860)
                       ..                  ..+.+...-..+.+++|+||..+.+++... +.+|++.+.......++.
T Consensus       573 -~~------------------ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS  623 (893)
T KOG0291|consen  573 -RI------------------TAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQIS  623 (893)
T ss_pred             -ee------------------ehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEec
Confidence             00                  001111122678999999999998888766 569988765444433333

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.6e-49  Score=380.93  Aligned_cols=519  Identities=18%  Similarity=0.246  Sum_probs=413.2

Q ss_pred             EEEe-CCCEEEeee-CCeEEEEECCCCcE--EeeccCCccCeeEEEEcCCCCEEEEEcCC----CcEEEEEcccCeEEEE
Q 038577           18 AVLS-QNTKLISPV-GNRVSVTDLIKSKT--VTLPVESSSNICRIAVSPDGTFLLTVDEN----QRCHFINLHCHVVLHR   89 (860)
Q Consensus        18 ~~~s-dg~~l~~~~-~~~i~v~d~~~~~~--~~~~~~h~~~v~~va~spdg~~la~~~~d----~~i~vwd~~~~~~~~~   89 (860)
                      +.|| .|-|+|+|. .|+|+|||....+.  ...+..-.++|..++|++|+++|+..++.    |.+.+||  +|..+..
T Consensus        65 AkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~SvGe  142 (603)
T KOG0318|consen   65 AKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SGNSVGE  142 (603)
T ss_pred             EEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec--CCCccce
Confidence            6689 999999985 58999999977443  23344567899999999999999887653    4555665  6777777


Q ss_pred             ee-cCCceeEEEECCCCC-EEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEE
Q 038577           90 VR-FKYPVNAILFSPNGK-YIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVR  166 (860)
Q Consensus        90 ~~-~~~~v~~~~fspdg~-~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~  166 (860)
                      +. |...|++++|-|... +++++ .|+.|.+|+-+       |++....+..|..-|.|+.|+|||.++++++.||.+.
T Consensus       143 i~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGP-------PFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~  215 (603)
T KOG0318|consen  143 ITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGP-------PFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIY  215 (603)
T ss_pred             eeccceeEeeeeccCCCceEEEeccCCCeEEEeeCC-------CeeeeecccccccceeeEEECCCCCeEEEecCCccEE
Confidence            76 889999999999764 57777 78999999643       5556788889999999999999999999999999999


Q ss_pred             EEeecccccCcccccceEee---cCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCC
Q 038577          167 LFYVKEKLKGIHTNKPFLLL---GHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPG  243 (860)
Q Consensus       167 vwd~~~~~~~~~~~~~~~~~---~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~  243 (860)
                      +||-.++      .....+.   +|.+.|.++.|+||++     .+++++.|.++++||+.+...               
T Consensus       216 iyDGktg------e~vg~l~~~~aHkGsIfalsWsPDs~-----~~~T~SaDkt~KIWdVs~~sl---------------  269 (603)
T KOG0318|consen  216 IYDGKTG------EKVGELEDSDAHKGSIFALSWSPDST-----QFLTVSADKTIKIWDVSTNSL---------------  269 (603)
T ss_pred             EEcCCCc------cEEEEecCCCCccccEEEEEECCCCc-----eEEEecCCceEEEEEeeccce---------------
Confidence            9999988      5566666   8999999999999999     999999999999999998643               


Q ss_pred             CCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEE
Q 038577          244 TPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVF  323 (860)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  323 (860)
                           .+.|.....     -......+.|.  .+.|++.+.+|.|.+++......+..+.+|...|+++..+++++++++
T Consensus       270 -----v~t~~~~~~-----v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~S  337 (603)
T KOG0318|consen  270 -----VSTWPMGST-----VEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYS  337 (603)
T ss_pred             -----EEEeecCCc-----hhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEe
Confidence                 233332221     11233344454  668999999999999999999999999999999999999999999988


Q ss_pred             EEccCCcEEEEEccCceEEEEe-cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe-ecCCCceEEEEEee
Q 038577          324 GCAKLGQLLVWEWRSESYILKQ-QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTF-TEHTNAVTALHFMA  401 (860)
Q Consensus       324 ~~~~~g~i~v~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~  401 (860)
                      ++.+ |.|.-|+..++..-... ..|...|.+++-+..+ .+++.+.|.++++.++..+...... ..-.....+++..+
T Consensus       338 gsyD-G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~-~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~  415 (603)
T KOG0318|consen  338 GSYD-GHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG-ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLS  415 (603)
T ss_pred             eccC-ceEEEEecCCccccccccccccceEEEEeecCCC-cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcC
Confidence            8776 99999999988766544 6799999999988655 4677788889999988643322211 11233345888888


Q ss_pred             CCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCce--EEEecCcccC
Q 038577          402 NNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRL--LDILSGHEGP  479 (860)
Q Consensus       402 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~--~~~~~~h~~~  479 (860)
                      ++..++.+..++.+.+=|...   ..  ..+......+++++|++..+++|+.|+ .+++|.+..+.+  ...+..|.++
T Consensus       416 d~~~avv~~~~~iv~l~~~~~---~~--~~~~~y~~s~vAv~~~~~~vaVGG~Dg-kvhvysl~g~~l~ee~~~~~h~a~  489 (603)
T KOG0318|consen  416 DGGTAVVACISDIVLLQDQTK---VS--SIPIGYESSAVAVSPDGSEVAVGGQDG-KVHVYSLSGDELKEEAKLLEHRAA  489 (603)
T ss_pred             CCCEEEEEecCcEEEEecCCc---ce--eeccccccceEEEcCCCCEEEEecccc-eEEEEEecCCcccceeeeecccCC
Confidence            887777766655444433322   11  222334568999999999999999999 899999987653  3456679999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc-ccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEe
Q 038577          480 VHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF-PHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIE  558 (860)
Q Consensus       480 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  558 (860)
                      |+++++|||+.+||++...+.+.+||+.+.+...... -|...|.+++|+|+..++|+|+-|-.|.||+++.....-.++
T Consensus       490 iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik  569 (603)
T KOG0318|consen  490 ITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK  569 (603)
T ss_pred             ceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec
Confidence            9999999999999999999999999999887644444 499999999999999999999999999999998775554444


Q ss_pred             cccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECC
Q 038577          559 GRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVA  611 (860)
Q Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~  611 (860)
                      +.+.                   ..|+.+.|-. ...+++.+.|..|++|+++
T Consensus       570 nAH~-------------------~gVn~v~wld-e~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  570 NAHL-------------------GGVNSVAWLD-ESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             cccc-------------------cCceeEEEec-CceEEeccCcceeEEeccc
Confidence            3322                   2499999964 5578899999999999975

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3e-50  Score=402.04  Aligned_cols=522  Identities=19%  Similarity=0.284  Sum_probs=423.7

Q ss_pred             CCCCEEEEEcCCCcEEEEEcccCeEEEEe---ecCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEe
Q 038577           62 PDGTFLLTVDENQRCHFINLHCHVVLHRV---RFKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTL  137 (860)
Q Consensus        62 pdg~~la~~~~d~~i~vwd~~~~~~~~~~---~~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~  137 (860)
                      ..|+++|+ +..-.|.+||+.+|+....+   +...+++|++-+||.-+||+| .||.|+||+..++.       ...++
T Consensus        32 ~~Gr~va~-~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~-------~~~tf  103 (888)
T KOG0306|consen   32 GKGRAVAV-SALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEE-------ILITF  103 (888)
T ss_pred             CCCcEEEE-eccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCc-------eeeee
Confidence            35787776 23468999999999554443   345689999999999999999 99999999999875       47889


Q ss_pred             eccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCcc
Q 038577          138 ADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCY  217 (860)
Q Consensus       138 ~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~  217 (860)
                      .||...|+++.|+..|.+|++||.|+.|.+||+-..      .....+.||++.|+...|..+.+     .+++++.|+.
T Consensus       104 ngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E------~Gl~rL~GHkd~iT~~~F~~~~~-----~lvS~sKDs~  172 (888)
T KOG0306|consen  104 NGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGE------EGLFRLRGHKDSITQALFLNGDS-----FLVSVSKDSM  172 (888)
T ss_pred             cccccceEEEEEcccCceEeecCCCccEEEEEeccc------eeeEEeecchHHHhHHhccCCCe-----EEEEeccCce
Confidence            999999999999999999999999999999999887      56899999999999999998777     9999999999


Q ss_pred             EEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCC--
Q 038577          218 MFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPD--  295 (860)
Q Consensus       218 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~--  295 (860)
                      |++||+++..+                            ......|.+.+..+++.+  +.+++++.++.+.+|++..  
T Consensus       173 iK~WdL~tqhC----------------------------f~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~  222 (888)
T KOG0306|consen  173 IKFWDLETQHC----------------------------FETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFED  222 (888)
T ss_pred             EEEEeccccee----------------------------eeEEecccceEEEEEEec--ceEEEEecCCceEEEEeeccc
Confidence            99999998654                            122234556667777666  5666777777777776610  


Q ss_pred             ----------------------ceeEEEEe--------------------------------------------------
Q 038577          296 ----------------------FVCIHLLS--------------------------------------------------  303 (860)
Q Consensus       296 ----------------------~~~~~~~~--------------------------------------------------  303 (860)
                                            ++.+....                                                  
T Consensus       223 D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~  302 (888)
T KOG0306|consen  223 DEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDD  302 (888)
T ss_pred             ccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccc
Confidence                                  00000000                                                  


Q ss_pred             ---------------ecCceeEEEEEeeCCCE---EEEEEccCCcEEEEEccCceE---------EEEecCcccCeEEEE
Q 038577          304 ---------------ISREKITTAVFNELGNW---LVFGCAKLGQLLVWEWRSESY---------ILKQQGHYFDVNCLA  356 (860)
Q Consensus       304 ---------------~~~~~i~~~~~s~~~~~---l~~~~~~~g~i~v~d~~~~~~---------~~~~~~~~~~v~~~~  356 (860)
                                     .....+.++.+.|.+..   ++.  -.+..+..|.++....         ...+.+|...|++++
T Consensus       303 v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~--l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~  380 (888)
T KOG0306|consen  303 VEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL--LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLC  380 (888)
T ss_pred             hhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEE--eecCceEEEEeccCCCCCccccccceeeeccchhheeEEE
Confidence                           00134666777766532   233  2236777777655211         134578999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCc
Q 038577          357 YSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQ  436 (860)
Q Consensus       357 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~  436 (860)
                      +|.+...+++|+. +.+++|+..+.++++++..  +.+.+..|.|.++++++|...|.+.+||+.+...+.+.. .+...
T Consensus       381 vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~-AHdga  456 (888)
T KOG0306|consen  381 VSSDSILLASGAG-ESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR-AHDGA  456 (888)
T ss_pred             eecCceeeeecCC-CcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhh-ccccc
Confidence            9999877777665 7999999999999999964  488899999999999999999999999999988877777 56678


Q ss_pred             EEEEEECCCCCEEEEEecCCCeEEEEECCC-----CceEEEec-------CcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038577          437 FVSLASDQSGEVICAGTLDSFEIFVWSMKT-----GRLLDILS-------GHEGPVHGLVFSPTNATLASSSWDKTVRLW  504 (860)
Q Consensus       437 ~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~-----~~~~~~~~-------~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw  504 (860)
                      +.+++.+||+..+++|+.|. +|++||..-     |...+.+.       .-...|.|+.+||||++||.+--|.+|+||
T Consensus       457 IWsi~~~pD~~g~vT~saDk-tVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVy  535 (888)
T KOG0306|consen  457 IWSISLSPDNKGFVTGSADK-TVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVY  535 (888)
T ss_pred             eeeeeecCCCCceEEecCCc-EEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEE
Confidence            99999999999999999999 999999751     21111111       135679999999999999999999999999


Q ss_pred             EccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcE
Q 038577          505 NVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCF  584 (860)
Q Consensus       505 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  584 (860)
                      -+++-+....+.+|.-||.++..|||++++++|+.|.+|++|-++-|.+...+-+|.+                    .|
T Consensus       536 flDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdD--------------------Sv  595 (888)
T KOG0306|consen  536 FLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDD--------------------SV  595 (888)
T ss_pred             EecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccC--------------------ce
Confidence            9999998888999999999999999999999999999999999999999999999987                    59


Q ss_pred             EEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeecccccccceeeeccCCCCCCCCCCccccCCCCCcccccccccc
Q 038577          585 TTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTR  664 (860)
Q Consensus       585 ~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  664 (860)
                      .++.|-|...++.++|.|+.|+-||-+.-+.++++.                                            
T Consensus       596 m~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~--------------------------------------------  631 (888)
T KOG0306|consen  596 MSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD--------------------------------------------  631 (888)
T ss_pred             eEEEEcccceeEEEecCcceEEeechhhhhhheeec--------------------------------------------
Confidence            999999999999999999999999988777665443                                            


Q ss_pred             CccccCCCCCCCCCCCCccceeEEEECCCCCeEEEecccc-EEEEecCCccccCC
Q 038577          665 GKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEG-VLVYSIDESFIFDP  718 (860)
Q Consensus       665 ~~~~~~~~g~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g-~~i~~~~~~~~~~~  718 (860)
                              |       |...+.+++.+|+|+++++++.|- +.+|+..++..+-.
T Consensus       632 --------~-------H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~lE  671 (888)
T KOG0306|consen  632 --------G-------HHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILILE  671 (888)
T ss_pred             --------c-------chheeeeeEEcCCCCeEEeccCCceeEeeeccCcceeee
Confidence                    2       234689999999999999999977 55999877666543

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.2e-52  Score=381.88  Aligned_cols=339  Identities=23%  Similarity=0.367  Sum_probs=300.0

Q ss_pred             eEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEE
Q 038577          131 FELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIY  210 (860)
Q Consensus       131 ~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~  210 (860)
                      ..+...+.||.++|.|++|+|+|.+|++|+.|.++|+||+.+.      .+..+..+|...|.+++|+||++     .|+
T Consensus       105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te------Tp~~t~KgH~~WVlcvawsPDgk-----~iA  173 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE------TPLFTCKGHKNWVLCVAWSPDGK-----KIA  173 (480)
T ss_pred             ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC------CcceeecCCccEEEEEEECCCcc-----hhh
Confidence            3467788999999999999999999999999999999999998      77899999999999999999999     999


Q ss_pred             EEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEE
Q 038577          211 TIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGL  290 (860)
Q Consensus       211 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~  290 (860)
                      +|+.||+|++||..++++                           ....+.+|...|++++|.|-..             
T Consensus       174 SG~~dg~I~lwdpktg~~---------------------------~g~~l~gH~K~It~Lawep~hl-------------  213 (480)
T KOG0271|consen  174 SGSKDGSIRLWDPKTGQQ---------------------------IGRALRGHKKWITALAWEPLHL-------------  213 (480)
T ss_pred             ccccCCeEEEecCCCCCc---------------------------ccccccCcccceeEEeeccccc-------------
Confidence            999999999999988754                           3456778888888888876321             


Q ss_pred             EECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCC
Q 038577          291 YQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADD  370 (860)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  370 (860)
                                              .|..+.+++++ .||.++|||+..+.++..+.+|..+|+|+.|--+| ++++|+.|
T Consensus       214 ------------------------~p~~r~las~s-kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~D  267 (480)
T KOG0271|consen  214 ------------------------VPPCRRLASSS-KDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQD  267 (480)
T ss_pred             ------------------------CCCccceeccc-CCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCC
Confidence                                    12334444443 44888888888888888889999999999998766 89999999


Q ss_pred             CcEEEEECCCCeeEEEeecCCCceEEEEEe-----------eCCC-------------------------EEEEEeCCCc
Q 038577          371 NKVKVWTVSSGFCFVTFTEHTNAVTALHFM-----------ANNH-------------------------SLLSASLDGT  414 (860)
Q Consensus       371 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~-----------~~~~-------------------------~l~s~~~dg~  414 (860)
                      ++|++|+...|.+.+++++|...|+.++.+           |.++                         .+++|+.|.+
T Consensus       268 rtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~t  347 (480)
T KOG0271|consen  268 RTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFT  347 (480)
T ss_pred             ceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCce
Confidence            999999999999999999999999999877           2233                         4999999999


Q ss_pred             EEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEE
Q 038577          415 VRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLAS  494 (860)
Q Consensus       415 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  494 (860)
                      +.+|+....+....-...+...+..+.||||++++|+++.|. .|++||.++|+.+..|+||-++|..++|+.|.++|++
T Consensus       348 lflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk-SVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS  426 (480)
T KOG0271|consen  348 LFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK-SVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVS  426 (480)
T ss_pred             EEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc-ceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEE
Confidence            999998766544334445666899999999999999999999 9999999999999999999999999999999999999


Q ss_pred             EeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEe
Q 038577          495 SSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWD  547 (860)
Q Consensus       495 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  547 (860)
                      |+.|.++++||+++.+....+.+|..+|.++.|+|||..+++|+.|..+++|.
T Consensus       427 ~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  427 GSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             cCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            99999999999999998888889999999999999999999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.8e-52  Score=382.80  Aligned_cols=326  Identities=22%  Similarity=0.315  Sum_probs=297.4

Q ss_pred             eccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee-cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCC
Q 038577           47 LPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGF  124 (860)
Q Consensus        47 ~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~  124 (860)
                      .+.||.+.|.|++|||+|+.||+|+.|.++++||+.+..++.+.+ |...|.|++|||||+.||+| .+|.|++||..++
T Consensus       110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg  189 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG  189 (480)
T ss_pred             ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCC
Confidence            445999999999999999999999999999999999999999998 99999999999999999999 8999999999998


Q ss_pred             CcccceeEEEEEeeccCCCeEEEEEcC-----CCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEcc
Q 038577          125 KKEVFAFELIRTLADCNDKVTALNWSP-----DSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSV  199 (860)
Q Consensus       125 ~~~~~~~~~~~~~~~h~~~v~~l~~s~-----d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~  199 (860)
                      +.      ....+.+|...|++++|-|     ..++||+++.||+|+|||+..+      .....+.+|..+|+++.|-.
T Consensus       190 ~~------~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~------~~~~~lsgHT~~VTCvrwGG  257 (480)
T KOG0271|consen  190 QQ------IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG------TCVRTLSGHTASVTCVRWGG  257 (480)
T ss_pred             Cc------ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc------eEEEEeccCccceEEEEEcC
Confidence            86      5688999999999999965     6789999999999999999998      78999999999999999987


Q ss_pred             CCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEec------
Q 038577          200 DKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYH------  273 (860)
Q Consensus       200 ~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------  273 (860)
                      ++      ++++++.|++|++|+...+..                            ...+.+|...|..++.+      
T Consensus       258 ~g------liySgS~DrtIkvw~a~dG~~----------------------------~r~lkGHahwvN~lalsTdy~LR  303 (480)
T KOG0271|consen  258 EG------LIYSGSQDRTIKVWRALDGKL----------------------------CRELKGHAHWVNHLALSTDYVLR  303 (480)
T ss_pred             Cc------eEEecCCCceEEEEEccchhH----------------------------HHhhcccchheeeeeccchhhhh
Confidence            76      899999999999999887533                            23445555566655544      


Q ss_pred             -----C-------------------------CCCEEEEEEcCCeEEEEECCC-ceeEEEEeecCceeEEEEEeeCCCEEE
Q 038577          274 -----R-------------------------GLDMVVVGFSNGVFGLYQMPD-FVCIHLLSISREKITTAVFNELGNWLV  322 (860)
Q Consensus       274 -----~-------------------------~~~~l~~~~~~g~i~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~  322 (860)
                           |                         .++.+++|+.|+++.+|+... .+++..+.+|..-|..+.||||+++++
T Consensus       304 tgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IA  383 (480)
T KOG0271|consen  304 TGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIA  383 (480)
T ss_pred             ccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEE
Confidence                 2                         234699999999999999754 447778889999999999999999999


Q ss_pred             EEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeC
Q 038577          323 FGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMAN  402 (860)
Q Consensus       323 ~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~  402 (860)
                      +++.+ ..|++|+.++|+.+..+++|-..|..++|+.|.++|++|+.|.++++|++++.+....+.+|.+.|.++.|+||
T Consensus       384 SaSFD-kSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspD  462 (480)
T KOG0271|consen  384 SASFD-KSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPD  462 (480)
T ss_pred             Eeecc-cceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCC
Confidence            99887 99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEE
Q 038577          403 NHSLLSASLDGTVRAWD  419 (860)
Q Consensus       403 ~~~l~s~~~dg~i~~wd  419 (860)
                      |..+++|+.|..+++|.
T Consensus       463 G~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  463 GQRVASGGKDKVLRLWR  479 (480)
T ss_pred             CceeecCCCceEEEeec
Confidence            99999999999999994

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.4e-45  Score=365.84  Aligned_cols=561  Identities=17%  Similarity=0.219  Sum_probs=409.6

Q ss_pred             ccccccc-CCcEEEe-CCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEc--CCCcEEEEEccc
Q 038577            8 LLGAPYR-GGNAVLS-QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVD--ENQRCHFINLHC   83 (860)
Q Consensus         8 ~~g~~~~-~~~~~~s-dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~--~d~~i~vwd~~~   83 (860)
                      .+|..-. +..++.+ -...+||+.|..|.+||++..++.++...|+..++|+||||+|+|+|+|-  ....++||++..
T Consensus        32 VlGlTv~~~~gLa~~p~Sgl~aYpAGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~  111 (1080)
T KOG1408|consen   32 VLGLTVKNANGLASVPCSGLCAYPAGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAF  111 (1080)
T ss_pred             hhceEeecCCcccccccccceeeccCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeecc
Confidence            3443333 3346666 66689999999999999999999999989999999999999999999974  678899999999


Q ss_pred             CeEEEEee-cCCceeEEEECCCCCEEEEE---eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEe
Q 038577           84 HVVLHRVR-FKYPVNAILFSPNGKYIAVG---TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVG  159 (860)
Q Consensus        84 ~~~~~~~~-~~~~v~~~~fspdg~~la~~---~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~  159 (860)
                      ...+..+. |+..|+|++|+|.++|+++.   .|-.|.+||+...-.        ..-..-...|..++|+.||.|+++.
T Consensus       112 h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~--------~asnkiss~Vsav~fsEdgSYfvT~  183 (1080)
T KOG1408|consen  112 HGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSS--------GASNKISSVVSAVAFSEDGSYFVTS  183 (1080)
T ss_pred             ccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccc--------ccccccceeEEEEEEccCCceeeee
Confidence            88888877 99999999999999999976   455777888765421        1112235678999999999999998


Q ss_pred             ecCCeEEEEeecccccCcccccceEeec----------------------------------C-----------------
Q 038577          160 SKDLAVRLFYVKEKLKGIHTNKPFLLLG----------------------------------H-----------------  188 (860)
Q Consensus       160 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~----------------------------------h-----------------  188 (860)
                      +. ..|++|.++.+.+.   ..+..+.+                                  |                 
T Consensus       184 gn-rHvk~wyl~~~~Ky---kdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcR  259 (1080)
T KOG1408|consen  184 GN-RHVKLWYLQIQSKY---KDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCR  259 (1080)
T ss_pred             ee-eeEEEEEeeccccc---cCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhh
Confidence            75 69999999877311   11111111                                  1                 


Q ss_pred             CCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCcc--ccCCCCCCCCCCCcceeeeEEeeeeccccCCCCc
Q 038577          189 RDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDE--TMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSK  266 (860)
Q Consensus       189 ~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (860)
                      .....+++.+  ..     +|+.++.+|.|++++.++-......  ............      .-........++.-..
T Consensus       260 TTnAnCIcVs--~r-----~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~------q~~~~~s~~~~a~fPD  326 (1080)
T KOG1408|consen  260 TTNANCICVS--SR-----LIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLS------QPEPKNSESSPAIFPD  326 (1080)
T ss_pred             ccccceeeee--cc-----eEEEeeccceeeecCcchhhhccccccccccccchhhcc------cccccccccCcccCCc
Confidence            0011122332  33     8999999999999998764321100  000000000000      0000000111111223


Q ss_pred             eEEEEecCCCCEEEEEEcCCeEEEEECCCceeE---EEEeecCceeEEEEEeeC------C----CEEEEEEccCCcEEE
Q 038577          267 VTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCI---HLLSISREKITTAVFNEL------G----NWLVFGCAKLGQLLV  333 (860)
Q Consensus       267 v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~---~~~~~~~~~i~~~~~s~~------~----~~l~~~~~~~g~i~v  333 (860)
                      ..++.|++....+.+...|..+++||+.+-..+   ..+-.|...|..+..-|-      .    +--+++++.|++|++
T Consensus       327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl  406 (1080)
T KOG1408|consen  327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL  406 (1080)
T ss_pred             eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence            567889999999999999999999999865443   233345555555544331      0    112455566699999


Q ss_pred             EEccCceEEEE-------------------------------------ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038577          334 WEWRSESYILK-------------------------------------QQGHYFDVNCLAYSPDSQLLATGADDNKVKVW  376 (860)
Q Consensus       334 ~d~~~~~~~~~-------------------------------------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  376 (860)
                      |++..+..-..                                     .......+++++.+|+|++||+|..-|++++|
T Consensus       407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy  486 (1080)
T KOG1408|consen  407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY  486 (1080)
T ss_pred             eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence            99876211000                                     01122358999999999999999999999999


Q ss_pred             ECCCCeeEEEeecCCCceEEEEEeeC---CCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCC--CEEEE
Q 038577          377 TVSSGFCFVTFTEHTNAVTALHFMAN---NHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSG--EVICA  451 (860)
Q Consensus       377 d~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~  451 (860)
                      ++..-+....+..|...|.|+.|+..   .+.|++++.|.-|.+||+...-....-...+...++++.|...|  ..+++
T Consensus       487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mis  566 (1080)
T KOG1408|consen  487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMIS  566 (1080)
T ss_pred             EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEe
Confidence            99999888899999999999999852   46899999999999999976544444444556689999988777  66667


Q ss_pred             EecCCCeEEEEECCC-CceEEEecC-----cccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcc---cCCCe
Q 038577          452 GTLDSFEIFVWSMKT-GRLLDILSG-----HEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFP---HTHDV  522 (860)
Q Consensus       452 ~~~~~~~i~v~d~~~-~~~~~~~~~-----h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v  522 (860)
                      ++.|. .|+ |+... ..-...+..     ....+.+++..|..+++++++.|+.|+|||+.+++....+.+   |.+..
T Consensus       567 cGADk-sim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~l  644 (1080)
T KOG1408|consen  567 CGADK-SIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDL  644 (1080)
T ss_pred             ccCch-hhh-eehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCce
Confidence            77775 443 33332 111111211     245789999999999999999999999999999997777764   67788


Q ss_pred             EEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCC
Q 038577          523 LTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSS  602 (860)
Q Consensus       523 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d  602 (860)
                      ..+...|.|-|+|+.+.|.++.++|..+|+++..+.+|...                    |+.+.|++|-+.|++.+.|
T Consensus       645 IKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~--------------------VTG~kF~nDCkHlISvsgD  704 (1080)
T KOG1408|consen  645 IKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEA--------------------VTGVKFLNDCKHLISVSGD  704 (1080)
T ss_pred             EEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchh--------------------eeeeeecccchhheeecCC
Confidence            99999999999999999999999999999999999999874                    9999999999999999999


Q ss_pred             CeEEEEECCCceE
Q 038577          603 KYICMYDVADQVL  615 (860)
Q Consensus       603 g~v~vwd~~~~~~  615 (860)
                      |+|.||.+.....
T Consensus       705 gCIFvW~lp~~mi  717 (1080)
T KOG1408|consen  705 GCIFVWKLPLTMI  717 (1080)
T ss_pred             ceEEEEECchhHh
Confidence            9999999986443

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=2.6e-43  Score=349.69  Aligned_cols=510  Identities=19%  Similarity=0.232  Sum_probs=381.5

Q ss_pred             cEEEe-CCCEEEeeeCC---eEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcC--CCcEEEEEcccCeEEEEe
Q 038577           17 NAVLS-QNTKLISPVGN---RVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDE--NQRCHFINLHCHVVLHRV   90 (860)
Q Consensus        17 ~~~~s-dg~~l~~~~~~---~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~--d~~i~vwd~~~~~~~~~~   90 (860)
                      .++|| +|+|+++|.-|   .++||+++..-++..+..|...|+|++|||.++|+++.+.  |-.|.+||+........-
T Consensus        83 ~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asn  162 (1080)
T KOG1408|consen   83 CVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASN  162 (1080)
T ss_pred             EEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccccccc
Confidence            69999 99999998633   4999999999998888899999999999999999998765  556778998877666665


Q ss_pred             ecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEE------------------------------EEeecc
Q 038577           91 RFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELI------------------------------RTLADC  140 (860)
Q Consensus        91 ~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~------------------------------~~~~~h  140 (860)
                      +....|.+++|+.||.|+++.+...|++|.++.+++...+.++.                              .+-.||
T Consensus       163 kiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGh  242 (1080)
T KOG1408|consen  163 KISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGH  242 (1080)
T ss_pred             ccceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccc
Confidence            66788999999999999999999999999998776322111100                              000011


Q ss_pred             -----------------CCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccc---------------eEeec-
Q 038577          141 -----------------NDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKP---------------FLLLG-  187 (860)
Q Consensus       141 -----------------~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~---------------~~~~~-  187 (860)
                                       +....|++.+  .+++++|+.+|.|++++..+.. ...+...               ....+ 
T Consensus       243 LvEFSsRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~-y~~Tlpr~halg~d~a~~~q~~~~~s~~  319 (1080)
T KOG1408|consen  243 LVEFSSRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLD-YAGTLPRSHALGSDTANLSQPEPKNSES  319 (1080)
T ss_pred             eeeechhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhh-hccccccccccccchhhccccccccccc
Confidence                             0112344443  5799999999999999877651 1000000               00000 


Q ss_pred             ---CCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCC
Q 038577          188 ---HRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAP  264 (860)
Q Consensus       188 ---h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (860)
                         .--...++.|.+...     .|.....|..+++||+..-...-...         ....-....|.+..... .-+.
T Consensus       320 ~~a~fPD~IA~~Fdet~~-----klscVYndhSlYvWDvrD~~kvgk~~---------s~lyHS~ciW~Ve~~p~-nv~~  384 (1080)
T KOG1408|consen  320 SPAIFPDAIACQFDETTD-----KLSCVYNDHSLYVWDVRDVNKVGKCS---------SMLYHSACIWDVENLPC-NVHS  384 (1080)
T ss_pred             CcccCCceeEEEecCCCc-----eEEEEEcCceEEEEecccccccccee---------eeeeccceeeeeccccc-cccC
Confidence               001234678888877     89999999999999998632100000         00000012343322111 1111


Q ss_pred             CceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEE-------------------------------------EeecCc
Q 038577          265 SKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHL-------------------------------------LSISRE  307 (860)
Q Consensus       265 ~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~-------------------------------------~~~~~~  307 (860)
                      .  +..+ -|. ..+++++.||+|++|++..+..-..                                     .-....
T Consensus       385 ~--~~ac-lp~-~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~  460 (1080)
T KOG1408|consen  385 P--TAAC-LPR-GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRF  460 (1080)
T ss_pred             c--cccc-CCc-cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCccc
Confidence            1  1111 122 2488999999999999874211111                                     011124


Q ss_pred             eeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcC---CCCEEEEEeCCCcEEEEECCC-Cee
Q 038577          308 KITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSP---DSQLLATGADDNKVKVWTVSS-GFC  383 (860)
Q Consensus       308 ~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iwd~~~-~~~  383 (860)
                      .+++++.+|+|++|+.+..- |.++||++..-+.......|..+|.|+.|+.   ..++||+++.|.-|.+||... ...
T Consensus       461 G~R~~~vSp~gqhLAsGDr~-GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l  539 (1080)
T KOG1408|consen  461 GFRALAVSPDGQHLASGDRG-GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL  539 (1080)
T ss_pred             ceEEEEECCCcceecccCcc-CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccch
Confidence            68999999999999988766 9999999999999999999999999999986   356899999999999999874 456


Q ss_pred             EEEeecCCCceEEEEEeeCC--CEEEEEeCCCcEEEEEccccceeeEee----CCCCCcEEEEEECCCCCEEEEEecCCC
Q 038577          384 FVTFTEHTNAVTALHFMANN--HSLLSASLDGTVRAWDLFRYRNFRTFT----TPSSRQFVSLASDQSGEVICAGTLDSF  457 (860)
Q Consensus       384 ~~~~~~~~~~v~~i~~~~~~--~~l~s~~~dg~i~~wd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~  457 (860)
                      ++++.+|...|+++.|..+|  ..++++|.|..|.+--..+...-+.+.    ......+..+++.|..+++++++.|. 
T Consensus       540 ~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDr-  618 (1080)
T KOG1408|consen  540 VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDR-  618 (1080)
T ss_pred             hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEeccc-
Confidence            77899999999999998877  789999999877654333222222222    22345688999999999999999999 


Q ss_pred             eEEEEECCCCceEEEecC---cccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEE
Q 038577          458 EIFVWSMKTGRLLDILSG---HEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQL  534 (860)
Q Consensus       458 ~i~v~d~~~~~~~~~~~~---h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  534 (860)
                      .|+|||+++|+..+.|++   |.+..-.+...|.|-|+|+...|+++.++|..++++.....+|...|+.+.|.+|-+.|
T Consensus       619 nirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHl  698 (1080)
T KOG1408|consen  619 NIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHL  698 (1080)
T ss_pred             ceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhh
Confidence            999999999999999975   66778889999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCeEEEEeCCC
Q 038577          535 ACSTLDGQIHFWDPLN  550 (860)
Q Consensus       535 ~~~~~dg~i~iwd~~~  550 (860)
                      ++.+.||.|.||.+..
T Consensus       699 ISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  699 ISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             eeecCCceEEEEECch
Confidence            9999999999999864

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.9e-43  Score=330.36  Aligned_cols=283  Identities=25%  Similarity=0.375  Sum_probs=267.7

Q ss_pred             ecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCC
Q 038577          304 ISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPD--SQLLATGADDNKVKVWTVSSG  381 (860)
Q Consensus       304 ~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~  381 (860)
                      +...++..+.|+.|++.+++++-. |.+++|+..+...+.++.+|...+.++.|+|.  +..+|+++.||++++|++.+.
T Consensus       173 gd~rPis~~~fS~ds~~laT~sws-G~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e  251 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWS-GLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE  251 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecC-CceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence            345689999999999999999887 99999999999999999999999999999997  669999999999999999999


Q ss_pred             eeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEE
Q 038577          382 FCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFV  461 (860)
Q Consensus       382 ~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v  461 (860)
                      ..+..+.+|...|..++|+|+|++|.+++.|.+-++||+.++...-.. ..+...+.+++|.+||.++++|+.|. .-+|
T Consensus       252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q-EGHs~~v~~iaf~~DGSL~~tGGlD~-~~Rv  329 (459)
T KOG0272|consen  252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ-EGHSKGVFSIAFQPDGSLAATGGLDS-LGRV  329 (459)
T ss_pred             cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh-cccccccceeEecCCCceeeccCccc-hhhe
Confidence            999999999999999999999999999999999999999887765443 45566899999999999999999999 8999


Q ss_pred             EECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEee-CCCEEEEEeCC
Q 038577          462 WSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRP-DGRQLACSTLD  540 (860)
Q Consensus       462 ~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d  540 (860)
                      ||+++|+.+-.+.+|..+|.+++|+|+|..|||||.|++++|||++....+..+.+|..-|+.+.|+| .|.+|++++.|
T Consensus       330 WDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD  409 (459)
T KOG0272|consen  330 WDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD  409 (459)
T ss_pred             eecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccC
Confidence            99999999999999999999999999999999999999999999999988888889999999999999 78899999999


Q ss_pred             CeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEE
Q 038577          541 GQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYD  609 (860)
Q Consensus       541 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd  609 (860)
                      +++++|...++.++.++.||.+                    .|.++.+++||+++++++.|.++++|.
T Consensus       410 ~t~kiWs~~~~~~~ksLaGHe~--------------------kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  410 NTVKIWSTRTWSPLKSLAGHEG--------------------KVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cceeeecCCCcccchhhcCCcc--------------------ceEEEEeccCCceEEEeccCceeeecc
Confidence            9999999999999999999987                    499999999999999999999999995

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=7.6e-40  Score=325.15  Aligned_cols=562  Identities=16%  Similarity=0.169  Sum_probs=408.6

Q ss_pred             EeCCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCC---EEEEEcCCCcEEEEEcccCeEEEEeecC-Cc
Q 038577           20 LSQNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGT---FLLTVDENQRCHFINLHCHVVLHRVRFK-YP   95 (860)
Q Consensus        20 ~sdg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~---~la~~~~d~~i~vwd~~~~~~~~~~~~~-~~   95 (860)
                      +.-+..+++|.+..|.+||.........+.||...|+|+.+-|+.+   ++++|+.|++|++|.+...........+ ..
T Consensus        22 w~~~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~  101 (764)
T KOG1063|consen   22 WGPGGLVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHC  101 (764)
T ss_pred             ccccceEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcc
Confidence            3445689999999999999999988888889999999999999988   8999999999999999854444333322 45


Q ss_pred             eeEEEECCCCCEEEE-EeCCeEEEEeCCCCCcccceeEEEEEeecc--CCCeEEEEEcCC-CC-eEEEeecCCeEEEEee
Q 038577           96 VNAILFSPNGKYIAV-GTGKLVQIWRSPGFKKEVFAFELIRTLADC--NDKVTALNWSPD-SN-YLLVGSKDLAVRLFYV  170 (860)
Q Consensus        96 v~~~~fspdg~~la~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~s~d-~~-~l~s~~~dg~v~vwd~  170 (860)
                      +.++++...-....+ +.++.+.+||.+..+     +-+...+.-.  ..--.|+++.|+ +. .++.|+.+..|.++.-
T Consensus       102 ~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e-----~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~  176 (764)
T KOG1063|consen  102 KECVCVVARSSVMTCKAADGTVSVWDKQQDE-----VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSS  176 (764)
T ss_pred             eeEEEEEeeeeEEEeeccCceEEEeecCCCc-----eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEecc
Confidence            666777654433333 389999999994433     1122222222  222356666663 33 3455666777777766


Q ss_pred             cccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcce--
Q 038577          171 KEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERR--  248 (860)
Q Consensus       171 ~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--  248 (860)
                      ... +.   .....+.||.+.|.+++|...+.  ...+|++++.|..|++|.+.-.........+.........+...  
T Consensus       177 ~~d-~f---~~v~el~GH~DWIrsl~f~~~~~--~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l  250 (764)
T KOG1063|consen  177 SAD-SF---ARVAELEGHTDWIRSLAFARLGG--DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMIL  250 (764)
T ss_pred             CCc-ce---eEEEEeeccchhhhhhhhhccCC--CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeee
Confidence            533 22   56788999999999999976543  22389999999999999987654322111111000000011100  


Q ss_pred             -eeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCc--eeEEEE-----eecCceeEEEEEeeCCCE
Q 038577          249 -VKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDF--VCIHLL-----SISREKITTAVFNELGNW  320 (860)
Q Consensus       249 -~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~--~~~~~~-----~~~~~~i~~~~~s~~~~~  320 (860)
                       --.+.+.....+.+|...|.++.|+|.+..|++++.|.++.+|...+.  --....     .+........-|+|+++.
T Consensus       251 ~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~  330 (764)
T KOG1063|consen  251 EEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNV  330 (764)
T ss_pred             eeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCE
Confidence             112344445667799999999999999999999999999999987654  222222     223445888999999988


Q ss_pred             EEEEEccCCcEEEEEccCc---eEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----CeeEEEeecCCCc
Q 038577          321 LVFGCAKLGQLLVWEWRSE---SYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS----GFCFVTFTEHTNA  393 (860)
Q Consensus       321 l~~~~~~~g~i~v~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~  393 (860)
                      +++-+.. |..++|..+..   .....+.+|...|+.++|.|.|.+|++.+.|.+-|+|-.-.    ...+...+-|...
T Consensus       331 ii~~g~~-Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyD  409 (764)
T KOG1063|consen  331 IIAHGRT-GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYD  409 (764)
T ss_pred             EEEeccc-CcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccccccccc
Confidence            8877666 99999983332   22333478999999999999999999999999999987541    1234445568899


Q ss_pred             eEEEEEeeCCCEEEEEeCCCcEEEEEccc-------------------------------------------cce----e
Q 038577          394 VTALHFMANNHSLLSASLDGTVRAWDLFR-------------------------------------------YRN----F  426 (860)
Q Consensus       394 v~~i~~~~~~~~l~s~~~dg~i~~wd~~~-------------------------------------------~~~----~  426 (860)
                      ++|+++-+....+++|..+..+|+|+...                                           +..    .
T Consensus       410 l~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~  489 (764)
T KOG1063|consen  410 LTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCA  489 (764)
T ss_pred             ceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceee
Confidence            99999988667899999999999998611                                           000    0


Q ss_pred             eEe--------e--------------------CCCCCcEEEEEECCCCCEEEEEecCC----CeEEEEECCCCceEEEec
Q 038577          427 RTF--------T--------------------TPSSRQFVSLASDQSGEVICAGTLDS----FEIFVWSMKTGRLLDILS  474 (860)
Q Consensus       427 ~~~--------~--------------------~~~~~~~~~~~~~~~~~~l~~~~~~~----~~i~v~d~~~~~~~~~~~  474 (860)
                      .+.        .                    ..+...+.+++.+|+|+++|+++...    ..|++|+..+......+.
T Consensus       490 et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~  569 (764)
T KOG1063|consen  490 ETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE  569 (764)
T ss_pred             ecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec
Confidence            000        0                    11334789999999999999988654    279999999999999999


Q ss_pred             CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcce----eEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCC
Q 038577          475 GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGS----VESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLN  550 (860)
Q Consensus       475 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  550 (860)
                      +|.-.|+.++|||||++|++++.|+++.+|........    .....|..-|.+..|+|++.++++++.|.+|++|....
T Consensus       570 ~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~  649 (764)
T KOG1063|consen  570 GHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPD  649 (764)
T ss_pred             ccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccC
Confidence            99999999999999999999999999999998554321    22447999999999999999999999999999999887


Q ss_pred             C--ceeEEEecccccCCCccccccccccccCCCCcEEEEEEecC-----CCEEEEecCCCeEEEEECC
Q 038577          551 G--ELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSAD-----GSYILAGGSSKYICMYDVA  611 (860)
Q Consensus       551 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~-----g~~l~~~~~dg~v~vwd~~  611 (860)
                      .  +.+..+..                  ...+.+|+++++.|-     +..+++|-+.|.|.+|...
T Consensus       650 ~~d~~i~~~a~------------------~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  650 LRDKYISRFAC------------------LKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             chhhhhhhhch------------------hccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence            7  33332211                  122356899998762     3366778889999999865

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=9.5e-43  Score=325.72  Aligned_cols=283  Identities=21%  Similarity=0.404  Sum_probs=270.5

Q ss_pred             CCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeC--CCEEEEEEccCCcEEEEEccCc
Q 038577          262 QAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNEL--GNWLVFGCAKLGQLLVWEWRSE  339 (860)
Q Consensus       262 ~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~g~i~v~d~~~~  339 (860)
                      +...++..+.|+++++.+++|+-+|.+.+|+.++...++++.+|...+.++.|+|.  +..+++++.+ |++++|++.+.
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~D-gtvklw~~~~e  251 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASAD-GTVKLWKLSQE  251 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccC-CceeeeccCCC
Confidence            45678999999999999999999999999999999999999999999999999998  4567766655 99999999999


Q ss_pred             eEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 038577          340 SYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWD  419 (860)
Q Consensus       340 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd  419 (860)
                      ..+..+.+|...|..++|+|+|++|++++.|.+-++||+.++..+....+|...|.+++|.+||..+++||.|..-++||
T Consensus       252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWD  331 (459)
T KOG0272|consen  252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWD  331 (459)
T ss_pred             cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcC-CCCEEEEEeCC
Q 038577          420 LFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSP-TNATLASSSWD  498 (860)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~d  498 (860)
                      +++++++-.+.. +..+|.++.|+|+|-.+|+|+.|+ +++|||++..+.+.++.+|.+-|+.+.|+| .|.+|+|++.|
T Consensus       332 lRtgr~im~L~g-H~k~I~~V~fsPNGy~lATgs~Dn-t~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD  409 (459)
T KOG0272|consen  332 LRTGRCIMFLAG-HIKEILSVAFSPNGYHLATGSSDN-TCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD  409 (459)
T ss_pred             cccCcEEEEecc-cccceeeEeECCCceEEeecCCCC-cEEEeeecccccceecccccchhhheEecccCCeEEEEcccC
Confidence            999999998887 667999999999999999999999 999999999999999999999999999999 78899999999


Q ss_pred             CcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEe
Q 038577          499 KTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWD  547 (860)
Q Consensus       499 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  547 (860)
                      +++++|...+..++..+.+|.+.|.++.++||++++++++.|.++++|.
T Consensus       410 ~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  410 NTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            9999999999999999999999999999999999999999999999995

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=5.3e-40  Score=333.14  Aligned_cols=481  Identities=18%  Similarity=0.239  Sum_probs=387.1

Q ss_pred             CCEEEe-eeCCeEEEEECCCC-----cEEeeccCCccCeeEEEEcCCC--CEEEEEcCCCcEEEEEcccCeEEEEee-cC
Q 038577           23 NTKLIS-PVGNRVSVTDLIKS-----KTVTLPVESSSNICRIAVSPDG--TFLLTVDENQRCHFINLHCHVVLHRVR-FK   93 (860)
Q Consensus        23 g~~l~~-~~~~~i~v~d~~~~-----~~~~~~~~h~~~v~~va~spdg--~~la~~~~d~~i~vwd~~~~~~~~~~~-~~   93 (860)
                      |.+++. -.++.+.||+..++     .+..+.......|+++ ++|.-  +.++.|+..|.+.+||+.+++.+++++ +.
T Consensus       124 Ge~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~  202 (910)
T KOG1539|consen  124 GEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFF  202 (910)
T ss_pred             cceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccc
Confidence            444444 35678999998884     1222332333337776 56653  557889999999999999999999999 78


Q ss_pred             CceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCC-eEEEeecCCeEEEEeec
Q 038577           94 YPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSN-YLLVGSKDLAVRLFYVK  171 (860)
Q Consensus        94 ~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~-~l~s~~~dg~v~vwd~~  171 (860)
                      ..|+++.=+|-=..+|+| .+|.|.++++..++       .+..+....++|+.++|..||+ .||+|+..|.+.+||++
T Consensus       203 s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dk-------il~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe  275 (910)
T KOG1539|consen  203 SRITAIEQSPALDVVAIGLENGTVIIFNLKFDK-------ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLE  275 (910)
T ss_pred             cceeEeccCCcceEEEEeccCceEEEEEcccCc-------EEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcC
Confidence            999999999999999999 99999999999988       4677775569999999999996 56677778999999999


Q ss_pred             ccccCcccccc-eEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceee
Q 038577          172 EKLKGIHTNKP-FLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVK  250 (860)
Q Consensus       172 ~~~~~~~~~~~-~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (860)
                      ..      ... .....|.+.|....|.|...     .+++.+.|..+++|-.++++..                     
T Consensus       276 ~k------kl~~v~~nah~~sv~~~~fl~~ep-----Vl~ta~~DnSlk~~vfD~~dg~---------------------  323 (910)
T KOG1539|consen  276 KK------KLINVTRNAHYGSVTGATFLPGEP-----VLVTAGADNSLKVWVFDSGDGV---------------------  323 (910)
T ss_pred             CC------eeeeeeeccccCCcccceecCCCc-----eEeeccCCCceeEEEeeCCCCc---------------------
Confidence            87      334 34457999999999999988     9999999999999988765430                     


Q ss_pred             eEEeeeeccccCCCCceEEEEec-CCCCEEEEEEcCCeEEEEECCCceeEEE------------------EeecCceeEE
Q 038577          251 KWGLLRKDDFSQAPSKVTACDYH-RGLDMVVVGFSNGVFGLYQMPDFVCIHL------------------LSISREKITT  311 (860)
Q Consensus       251 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~~g~i~~~~~~~~~~~~~------------------~~~~~~~i~~  311 (860)
                       -+  ....-.+|..+..|+.|. .+|..+..+..|++++.+++.....-+.                  ....-.+|..
T Consensus       324 -pR--~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~  400 (910)
T KOG1539|consen  324 -PR--LLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVE  400 (910)
T ss_pred             -ch--heeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCccee
Confidence             00  112235788899999998 6788899999999999887642211110                  1111235666


Q ss_pred             EEEeeC----CCEEEEEEccCCcEEEEEccCceE-EEEe-----cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 038577          312 AVFNEL----GNWLVFGCAKLGQLLVWEWRSESY-ILKQ-----QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSG  381 (860)
Q Consensus       312 ~~~s~~----~~~l~~~~~~~g~i~v~d~~~~~~-~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  381 (860)
                      +++...    -..++++..++...+.|++++... ...+     +.....+++++.++.|++.+.|+..|.|-+|++++|
T Consensus       401 fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG  480 (910)
T KOG1539|consen  401 FAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG  480 (910)
T ss_pred             eecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC
Confidence            666542    245677777778999999987654 2222     123367899999999999999999999999999999


Q ss_pred             eeEEEe---ecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCe
Q 038577          382 FCFVTF---TEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFE  458 (860)
Q Consensus       382 ~~~~~~---~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  458 (860)
                      .....+   ..|.++|++++...-++.+++++.+|-+.+||+.+......+....  .+.++..+.....++++..+- .
T Consensus       481 i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~--~~~~iv~hr~s~l~a~~~ddf-~  557 (910)
T KOG1539|consen  481 IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGS--SITGIVYHRVSDLLAIALDDF-S  557 (910)
T ss_pred             eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCC--CcceeeeeehhhhhhhhcCce-e
Confidence            998888   5899999999999888999999999999999999888777766554  567888888888888888887 9


Q ss_pred             EEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEe
Q 038577          459 IFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACST  538 (860)
Q Consensus       459 i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  538 (860)
                      |.++|..+.+.++.+.||.+.|++++|||||++|++++.|++|++||+.++. +........+++++.|||+|.+||++.
T Consensus       558 I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~-lID~~~vd~~~~sls~SPngD~LAT~H  636 (910)
T KOG1539|consen  558 IRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT-LIDGLLVDSPCTSLSFSPNGDFLATVH  636 (910)
T ss_pred             EEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc-eeeeEecCCcceeeEECCCCCEEEEEE
Confidence            9999999999999999999999999999999999999999999999999997 555566788999999999999999999


Q ss_pred             CC-CeEEEEeCCC
Q 038577          539 LD-GQIHFWDPLN  550 (860)
Q Consensus       539 ~d-g~i~iwd~~~  550 (860)
                      .| .-|++|.-.+
T Consensus       637 vd~~gIylWsNks  649 (910)
T KOG1539|consen  637 VDQNGIYLWSNKS  649 (910)
T ss_pred             ecCceEEEEEchh
Confidence            88 4599997443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.6e-39  Score=315.29  Aligned_cols=468  Identities=18%  Similarity=0.267  Sum_probs=360.0

Q ss_pred             CCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee-cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcc
Q 038577           50 ESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKE  127 (860)
Q Consensus        50 ~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~  127 (860)
                      .++..|.++.|+|...+++++-.+|+|.|||.++...++.+. ..-||++..|-+...++++| .|..|+||+.+++++ 
T Consensus        11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek-   89 (794)
T KOG0276|consen   11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK-   89 (794)
T ss_pred             ccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccccee-
Confidence            588999999999999999999999999999999999999999 78899999999999999999 778999999999984 


Q ss_pred             cceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccc
Q 038577          128 VFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVN  207 (860)
Q Consensus       128 ~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~  207 (860)
                            +..+..|.+.|.+++.+|...++++++.|..|++||.+..  .   .+.+++.||...|.+++|.|...+    
T Consensus        90 ------V~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~--w---a~~qtfeGH~HyVMqv~fnPkD~n----  154 (794)
T KOG0276|consen   90 ------VKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE--W---ACEQTFEGHEHYVMQVAFNPKDPN----  154 (794)
T ss_pred             ------eEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc--e---eeeeEEcCcceEEEEEEecCCCcc----
Confidence                  8999999999999999999999999999999999999987  2   467899999999999999997765    


Q ss_pred             eEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCe
Q 038577          208 RIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGV  287 (860)
Q Consensus       208 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~  287 (860)
                      .+++++-|++|++|++....+                            ...+.+|...|.|+.+-+.|           
T Consensus       155 tFaS~sLDrTVKVWslgs~~~----------------------------nfTl~gHekGVN~Vdyy~~g-----------  195 (794)
T KOG0276|consen  155 TFASASLDRTVKVWSLGSPHP----------------------------NFTLEGHEKGVNCVDYYTGG-----------  195 (794)
T ss_pred             ceeeeeccccEEEEEcCCCCC----------------------------ceeeeccccCcceEEeccCC-----------
Confidence            999999999999998876432                            22334555555555554433           


Q ss_pred             EEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEE
Q 038577          288 FGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATG  367 (860)
Q Consensus       288 i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  367 (860)
                                                   |..++++++ +|..++|||.++..++.++.+|...|.++.|+|.-..+++|
T Consensus       196 -----------------------------dkpylIsga-DD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisg  245 (794)
T KOG0276|consen  196 -----------------------------DKPYLISGA-DDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISG  245 (794)
T ss_pred             -----------------------------CcceEEecC-CCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEe
Confidence                                         123444443 44788888888888888889999999999999999999999


Q ss_pred             eCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCC
Q 038577          368 ADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGE  447 (860)
Q Consensus       368 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (860)
                      +.||+++||+..+.+...++.-.-..+++++-.+.++.++.|..+|.+.+ .+-.             ....+..++.|+
T Consensus       246 sEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v-~lgr-------------eeP~vsMd~~gK  311 (794)
T KOG0276|consen  246 SEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV-KLGR-------------EEPAVSMDSNGK  311 (794)
T ss_pred             cCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE-EccC-------------CCCceeecCCcc
Confidence            99999999999998888888878889999999998888888888877654 2211             224556667776


Q ss_pred             EEEEEecCCCeEEEEE------CCCCceEE----EecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcc
Q 038577          448 VICAGTLDSFEIFVWS------MKTGRLLD----ILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFP  517 (860)
Q Consensus       448 ~l~~~~~~~~~i~v~d------~~~~~~~~----~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  517 (860)
                      .+.+....-..+.+-.      +..|+.+.    .+-.-.--...++.+|+|++++.|+ ||.-.||..-.     -...
T Consensus       312 Iiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vcg-dGEyiIyTala-----~RnK  385 (794)
T KOG0276|consen  312 IIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCG-DGEYIIYTALA-----LRNK  385 (794)
T ss_pred             EEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEec-CccEEEEEeee-----hhhc
Confidence            6665544221222222      22232221    1111111224578899999887776 88888887322     2223


Q ss_pred             cCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEE
Q 038577          518 HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYIL  597 (860)
Q Consensus       518 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~  597 (860)
                      ..+......|++|.+..++-..++.|+++  ++++....+...-                      .  +.+- -|-.|+
T Consensus       386 ~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~~~~----------------------~--~e~i-~gg~Ll  438 (794)
T KOG0276|consen  386 AFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIRPDM----------------------S--AEGI-FGGPLL  438 (794)
T ss_pred             ccccceeEEEcCCCCeEEEEecCCceEEE--ecceecccccccc----------------------c--eeee-cCCceE
Confidence            55667889999998888888888999999  6666665554321                      1  1111 234455


Q ss_pred             EecCCCeEEEEECCCceEEEEEeecccccccceeeeccCCCCCCCCCCccccCCCCCccccccccccCccccCCCCCCCC
Q 038577          598 AGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPN  677 (860)
Q Consensus       598 ~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  677 (860)
                      ....++.+++||-+++++++++..                                                        
T Consensus       439 g~~ss~~~~fydW~~~~lVrrI~v--------------------------------------------------------  462 (794)
T KOG0276|consen  439 GVRSSDFLCFYDWESGELVRRIEV--------------------------------------------------------  462 (794)
T ss_pred             EEEeCCeEEEEEcccceEEEEEee--------------------------------------------------------
Confidence            555667799999999999986642                                                        


Q ss_pred             CCCCccceeEEEECCCCCeEEEeccccEEEEecC
Q 038577          678 RGRPTIQTKCLKIAPTGRNFVAATTEGVLVYSID  711 (860)
Q Consensus       678 ~~~~~~~~~~~~~spdg~~~~~~~~~g~~i~~~~  711 (860)
                            .++.+.++.+|.+.+.++.+..+++..+
T Consensus       463 ------~~k~v~w~d~g~lVai~~d~Sfyil~~n  490 (794)
T KOG0276|consen  463 ------TSKHVYWSDNGELVAIAGDDSFYILKFN  490 (794)
T ss_pred             ------ccceeEEecCCCEEEEEecCceeEEEec
Confidence                  4677889999999999999997665554

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=7.6e-40  Score=291.40  Aligned_cols=291  Identities=19%  Similarity=0.273  Sum_probs=263.9

Q ss_pred             EeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee-cCCceeEEEECCCCCEEEEE-eCCeEEEEeCC
Q 038577           45 VTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSP  122 (860)
Q Consensus        45 ~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~  122 (860)
                      ..++.||.+.|.++.|++|+++|++++.||.+.|||.-+...++-++ ....|..++|+|.|.++|.| -|+...||++.
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls  127 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS  127 (343)
T ss_pred             EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence            36778999999999999999999999999999999999988888888 56789999999999999999 78999999998


Q ss_pred             CCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEcc-CC
Q 038577          123 GFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSV-DK  201 (860)
Q Consensus       123 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~  201 (860)
                      +..... ..+..+.+.+|.+.+.|+.|.+|+ .|++++.|.+..+||++++      .....+.+|.+.|.++.++| ++
T Consensus       128 ~~d~~g-~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g------~~~~~f~GH~gDV~slsl~p~~~  199 (343)
T KOG0286|consen  128 TRDAEG-NVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETG------QQTQVFHGHTGDVMSLSLSPSDG  199 (343)
T ss_pred             cccccc-cceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccc------eEEEEecCCcccEEEEecCCCCC
Confidence            653211 223567899999999999999854 6999999999999999999      78899999999999999999 77


Q ss_pred             CCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEE
Q 038577          202 KTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVV  281 (860)
Q Consensus       202 ~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  281 (860)
                      +     .+++++-|+..++||+..+..                            .+.|.+|.+.|.++.|.|+|.-+++
T Consensus       200 n-----tFvSg~cD~~aklWD~R~~~c----------------------------~qtF~ghesDINsv~ffP~G~afat  246 (343)
T KOG0286|consen  200 N-----TFVSGGCDKSAKLWDVRSGQC----------------------------VQTFEGHESDINSVRFFPSGDAFAT  246 (343)
T ss_pred             C-----eEEecccccceeeeeccCcce----------------------------eEeecccccccceEEEccCCCeeee
Confidence            7     999999999999999998644                            6788999999999999999999999


Q ss_pred             EEcCCeEEEEECCCceeEEEEeecC--ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcC
Q 038577          282 GFSNGVFGLYQMPDFVCIHLLSISR--EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSP  359 (860)
Q Consensus       282 ~~~~g~i~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~  359 (860)
                      |+.|++.++||+...+.+..+....  .+|++++||..|+.|+++..+ ..+.+||.-.++.+..+.+|...|.|+..+|
T Consensus       247 GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d-~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~  325 (343)
T KOG0286|consen  247 GSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDD-FTCNVWDTLKGERVGVLAGHENRVSCLGVSP  325 (343)
T ss_pred             cCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecC-CceeEeeccccceEEEeeccCCeeEEEEECC
Confidence            9999999999999988888776543  479999999999999988655 9999999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEE
Q 038577          360 DSQLLATGADDNKVKVWT  377 (860)
Q Consensus       360 ~~~~l~~~~~dg~i~iwd  377 (860)
                      ||..+++|+.|..++||.
T Consensus       326 DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  326 DGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             CCcEEEecchhHheeecC
Confidence            999999999999999994

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.4e-39  Score=289.79  Aligned_cols=290  Identities=25%  Similarity=0.419  Sum_probs=264.0

Q ss_pred             ccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecc
Q 038577          180 NKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDD  259 (860)
Q Consensus       180 ~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (860)
                      ....+++||.+.|.++.|++|.+     ++++++.||.+.+||.-+..                            +...
T Consensus        46 ~~rr~LkGH~~Ki~~~~ws~Dsr-----~ivSaSqDGklIvWDs~Ttn----------------------------K~ha   92 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIYAMDWSTDSR-----RIVSASQDGKLIVWDSFTTN----------------------------KVHA   92 (343)
T ss_pred             eeEEEecccccceeeeEecCCcC-----eEEeeccCCeEEEEEccccc----------------------------ceeE
Confidence            34578999999999999999999     99999999999999987642                            2344


Q ss_pred             ccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCc------eeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEE
Q 038577          260 FSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDF------VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLV  333 (860)
Q Consensus       260 ~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v  333 (860)
                      ++-....|..++|+|.|+.+|+|+-|+...||++.+.      ...+.+.+|.+-+.++.|.+| ..|++++++ .+..+
T Consensus        93 ipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD-~TCal  170 (343)
T KOG0286|consen   93 IPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGD-MTCAL  170 (343)
T ss_pred             EecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCC-ceEEE
Confidence            4556678999999999999999999999999999854      345678899999999999984 456666655 99999


Q ss_pred             EEccCceEEEEecCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCC
Q 038577          334 WEWRSESYILKQQGHYFDVNCLAYSP-DSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD  412 (860)
Q Consensus       334 ~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d  412 (860)
                      ||+++++.+..+.+|.+.|.+++++| +++.+++|+-|+..++||++.+.+.++|.+|.+.|.+++|.|+|.-+++|+.|
T Consensus       171 WDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD  250 (343)
T KOG0286|consen  171 WDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDD  250 (343)
T ss_pred             EEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCC
Confidence            99999999999999999999999999 99999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEccccceeeEeeCC-CCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCE
Q 038577          413 GTVRAWDLFRYRNFRTFTTP-SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNAT  491 (860)
Q Consensus       413 g~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~  491 (860)
                      ++.++||++..+.+..+..+ ....+++++||..|++|++|..|. .+.+||.-.++.+..+.+|.+.|+++..+|||.-
T Consensus       251 ~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~-~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~a  329 (343)
T KOG0286|consen  251 ATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDF-TCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMA  329 (343)
T ss_pred             ceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCC-ceeEeeccccceEEEeeccCCeeEEEEECCCCcE
Confidence            99999999999888887744 345789999999999999998887 9999999999999999999999999999999999


Q ss_pred             EEEEeCCCcEEEEE
Q 038577          492 LASSSWDKTVRLWN  505 (860)
Q Consensus       492 l~s~~~dg~i~iwd  505 (860)
                      +++|++|.+++||.
T Consensus       330 v~TgSWDs~lriW~  343 (343)
T KOG0286|consen  330 VATGSWDSTLRIWA  343 (343)
T ss_pred             EEecchhHheeecC
Confidence            99999999999994

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=8.8e-40  Score=283.95  Aligned_cols=282  Identities=20%  Similarity=0.348  Sum_probs=259.4

Q ss_pred             CEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce--EEEEecCcccCeEE
Q 038577          277 DMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES--YILKQQGHYFDVNC  354 (860)
Q Consensus       277 ~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~--~~~~~~~~~~~v~~  354 (860)
                      -+|++++.|-+|++|...+|.+..+++.....|..+.+.|+++.|++++.  ..|++||+.++.  ++..+.+|...|++
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~--qhvRlyD~~S~np~Pv~t~e~h~kNVta   88 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN--QHVRLYDLNSNNPNPVATFEGHTKNVTA   88 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC--CeeEEEEccCCCCCceeEEeccCCceEE
Confidence            36889999999999999999999999999999999999999999999876  699999998865  57888999999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCC
Q 038577          355 LAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSS  434 (860)
Q Consensus       355 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~  434 (860)
                      +.|..+|+.+++|++||+++|||++...+.+.+. |..+|+++..+|+...|+++..+|.|++||+....+...+.....
T Consensus        89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~  167 (311)
T KOG0315|consen   89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD  167 (311)
T ss_pred             EEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence            9999999999999999999999999976666664 789999999999999999999999999999999988888887777


Q ss_pred             CcEEEEEECCCCCEEEEEecCCCeEEEEECCCC------ceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 038577          435 RQFVSLASDQSGEVICAGTLDSFEIFVWSMKTG------RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFE  508 (860)
Q Consensus       435 ~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~------~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~  508 (860)
                      ..+.++.+.|||.+++++...| ..++|++-+.      +++..++.|.+-+..+.+|||+++||++|.|.+++||+.++
T Consensus       168 ~~i~sl~v~~dgsml~a~nnkG-~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~  246 (311)
T KOG0315|consen  168 TSIQSLTVMPDGSMLAAANNKG-NCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD  246 (311)
T ss_pred             cceeeEEEcCCCcEEEEecCCc-cEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence            8999999999999999998888 9999998754      45677889999999999999999999999999999999988


Q ss_pred             C-cceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccc
Q 038577          509 G-KGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRD  562 (860)
Q Consensus       509 ~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  562 (860)
                      . +....+.+|...+...+||.||+||++|+.|+.+++|++..++.+....+|..
T Consensus       247 ~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K  301 (311)
T KOG0315|consen  247 FFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHK  301 (311)
T ss_pred             ceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCccc
Confidence            7 44455668999999999999999999999999999999999999999999875

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=1.7e-37  Score=296.62  Aligned_cols=516  Identities=16%  Similarity=0.169  Sum_probs=389.4

Q ss_pred             cEEEeCCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCC--------cEEEEEcccCeEEE
Q 038577           17 NAVLSQNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQ--------RCHFINLHCHVVLH   88 (860)
Q Consensus        17 ~~~~sdg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~--------~i~vwd~~~~~~~~   88 (860)
                      ++-+--.+.++|...+.+.+||.+...++... ||+..|.|++++||.-++|+|...|        .+++||..+-..++
T Consensus        70 Nly~lptgE~vyfvA~V~Vl~n~ee~~Qr~y~-GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~  148 (626)
T KOG2106|consen   70 NLYLLPTGELVYFVAAVGVLYNWEERSQRHYL-GHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLH  148 (626)
T ss_pred             eeEEccCccEEEEeccEEEEEeehhhhccccc-CCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeee
Confidence            34444344577777788999999887777766 9999999999999999999764443        69999988888888


Q ss_pred             Eee-cCCceeEEEECC--CCCEEEEE---eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecC
Q 038577           89 RVR-FKYPVNAILFSP--NGKYIAVG---TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKD  162 (860)
Q Consensus        89 ~~~-~~~~v~~~~fsp--dg~~la~~---~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d  162 (860)
                      .+. ....|.|++||+  .|.+|++.   .+..+.|||+..+..       ..........|....|.|.+.-|+.....
T Consensus       149 V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~-------~~~vk~sne~v~~a~FHPtd~nliit~Gk  221 (626)
T KOG2106|consen  149 VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAK-------LGPVKTSNEVVFLATFHPTDPNLIITCGK  221 (626)
T ss_pred             eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhc-------cCcceeccceEEEEEeccCCCcEEEEeCC
Confidence            887 677899999998  45677766   556899999987764       33444556778899999977666666667


Q ss_pred             CeEEEEeecccccCcccccceEeec-CCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCC
Q 038577          163 LAVRLFYVKEKLKGIHTNKPFLLLG-HRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPS  241 (860)
Q Consensus       163 g~v~vwd~~~~~~~~~~~~~~~~~~-h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~  241 (860)
                      +.+.+|+.+.+ ...  +..-.+.+ .+..|.+++|.+++.      ++++..+|.|.+|+..+...             
T Consensus       222 ~H~~Fw~~~~~-~l~--k~~~~fek~ekk~Vl~v~F~engd------viTgDS~G~i~Iw~~~~~~~-------------  279 (626)
T KOG2106|consen  222 GHLYFWTLRGG-SLV--KRQGIFEKREKKFVLCVTFLENGD------VITGDSGGNILIWSKGTNRI-------------  279 (626)
T ss_pred             ceEEEEEccCC-ceE--EEeeccccccceEEEEEEEcCCCC------EEeecCCceEEEEeCCCceE-------------
Confidence            89999998877 111  12222222 336799999999995      99999999999999865311             


Q ss_pred             CCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEe--ecCceeEEEEEeeCCC
Q 038577          242 PGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLS--ISREKITTAVFNELGN  319 (860)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~  319 (860)
                                    .+... .|.+.|.+++...+|.++- |+.|..|..|| .+.+.++...  ...+.++.++-...+ 
T Consensus       280 --------------~k~~~-aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d-  341 (626)
T KOG2106|consen  280 --------------SKQVH-AHDGGVFSLCMLRDGTLLS-GGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD-  341 (626)
T ss_pred             --------------EeEee-ecCCceEEEEEecCccEee-cCccceEEecc-ccccccccccCchhcCCeeEEecCCCc-
Confidence                          23333 8899999999999998666 99999999999 4545444433  344566666554433 


Q ss_pred             EEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEE
Q 038577          320 WLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHF  399 (860)
Q Consensus       320 ~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~  399 (860)
                       ++++... +.|..=.++++-.+ ...+|......++.+|+..++++++.|+.+++|+  ..+...+.. -..+..++.|
T Consensus       342 -i~vGTtr-N~iL~Gt~~~~f~~-~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~f  415 (626)
T KOG2106|consen  342 -ILVGTTR-NFILQGTLENGFTL-TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADF  415 (626)
T ss_pred             -EEEeecc-ceEEEeeecCCceE-EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeec
Confidence             6666555 45554455544333 3468888999999999999999999999999999  444444332 4678899999


Q ss_pred             eeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCc-eEEE-ecCcc
Q 038577          400 MANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGR-LLDI-LSGHE  477 (860)
Q Consensus       400 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~-~~~~-~~~h~  477 (860)
                      +|.| .++.|...|...+.|..+...+..-..  ..++.++.++|+|.++|+|+.|+ .|++|-+.... .... -+.|.
T Consensus       416 hpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d--~~~ls~v~ysp~G~~lAvgs~d~-~iyiy~Vs~~g~~y~r~~k~~g  491 (626)
T KOG2106|consen  416 HPSG-VVAVGTATGRWFVLDTETQDLVTIHTD--NEQLSVVRYSPDGAFLAVGSHDN-HIYIYRVSANGRKYSRVGKCSG  491 (626)
T ss_pred             cCcc-eEEEeeccceEEEEecccceeEEEEec--CCceEEEEEcCCCCEEEEecCCC-eEEEEEECCCCcEEEEeeeecC
Confidence            9999 999999999999999988555444443  67899999999999999999999 99999887543 3322 23455


Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCccee----------------EE--cccCCCeEEEEEeeCCCEEEEEeC
Q 038577          478 GPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSV----------------ES--FPHTHDVLTVVYRPDGRQLACSTL  539 (860)
Q Consensus       478 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~----------------~~--~~~~~~v~~~~~s~~~~~l~~~~~  539 (860)
                      .+|+.+.||+|++++.+-+.|-.|..|....-+...                ..  ..+...+..++-+.+.+++|+|.+
T Consensus       492 s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd  571 (626)
T KOG2106|consen  492 SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDD  571 (626)
T ss_pred             ceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhcccc
Confidence            899999999999999999999999999433221111                00  125556677777888899999999


Q ss_pred             CCeEEEEeCCCCce---eEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEEC
Q 038577          540 DGQIHFWDPLNGEL---MYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV  610 (860)
Q Consensus       540 dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~  610 (860)
                      .|.|++|...-.++   .....+|.                    +.|++++|+-+...|++.+.|..|..|++
T Consensus       572 ~g~v~lf~yPc~s~rA~~he~~ghs--------------------~~vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  572 FGKVHLFSYPCSSPRAPSHEYGGHS--------------------SHVTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             CceEEEEccccCCCcccceeecccc--------------------ceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence            99999998654433   23334443                    46999999999999999889999999986

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.5e-39  Score=281.11  Aligned_cols=291  Identities=14%  Similarity=0.238  Sum_probs=260.7

Q ss_pred             CEEEEEcCCCcEEEEEcccCeEEEEeec-CCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCC
Q 038577           65 TFLLTVDENQRCHFINLHCHVVLHRVRF-KYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDK  143 (860)
Q Consensus        65 ~~la~~~~d~~i~vwd~~~~~~~~~~~~-~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~  143 (860)
                      -+||+++.|.+|++|...+|.+.++++| .+.|+.+...||++.||++....|++||++++...     ++.++.+|...
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~-----Pv~t~e~h~kN   85 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPN-----PVATFEGHTKN   85 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCC-----ceeEEeccCCc
Confidence            4789999999999999999999999995 56899999999999999999999999999988743     57899999999


Q ss_pred             eEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeee
Q 038577          144 VTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGF  223 (860)
Q Consensus       144 v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~  223 (860)
                      |+++.|..||+.+++|++||+++|||+...       .......|..+|+++..+|+..     .|+++..+|.|++||+
T Consensus        86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~-------~~qR~~~~~spVn~vvlhpnQt-----eLis~dqsg~irvWDl  153 (311)
T KOG0315|consen   86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSL-------SCQRNYQHNSPVNTVVLHPNQT-----ELISGDQSGNIRVWDL  153 (311)
T ss_pred             eEEEEEeecCeEEEecCCCceEEEEeccCc-------ccchhccCCCCcceEEecCCcc-----eEEeecCCCcEEEEEc
Confidence            999999999999999999999999999886       3444556779999999999998     9999999999999999


Q ss_pred             cCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCc------e
Q 038577          224 SGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDF------V  297 (860)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~------~  297 (860)
                      ....+                           .....+.....|.++...|||.+++.+...|..++|++...      +
T Consensus       154 ~~~~c---------------------------~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~  206 (311)
T KOG0315|consen  154 GENSC---------------------------THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELE  206 (311)
T ss_pred             cCCcc---------------------------ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccce
Confidence            88654                           12233344568999999999999999999999999998653      4


Q ss_pred             eEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc-eEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038577          298 CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE-SYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVW  376 (860)
Q Consensus       298 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  376 (860)
                      ++..++.|...+..+.+|||+++|++++++ .+++||+.++. +....+.+|...+...+||.||.+|++|+.|+.+++|
T Consensus       207 P~~k~~ah~~~il~C~lSPd~k~lat~ssd-ktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW  285 (311)
T KOG0315|consen  207 PVHKFQAHNGHILRCLLSPDVKYLATCSSD-KTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLW  285 (311)
T ss_pred             EhhheecccceEEEEEECCCCcEEEeecCC-ceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeec
Confidence            556788899999999999999999999887 99999999988 6666778999999999999999999999999999999


Q ss_pred             ECCCCeeEEEeecCCCceEEEEEe
Q 038577          377 TVSSGFCFVTFTEHTNAVTALHFM  400 (860)
Q Consensus       377 d~~~~~~~~~~~~~~~~v~~i~~~  400 (860)
                      ++..++.++...+|..+..|++..
T Consensus       286 ~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  286 DLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             ccccCceeeecCCcccccEEEEee
Confidence            999999999999999988888764

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.1e-39  Score=284.46  Aligned_cols=301  Identities=20%  Similarity=0.341  Sum_probs=261.9

Q ss_pred             eeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc-----CceEEEEecCcccCeEEEEEcCCCCEEEEEeCCC
Q 038577          297 VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR-----SESYILKQQGHYFDVNCLAYSPDSQLLATGADDN  371 (860)
Q Consensus       297 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~-----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  371 (860)
                      ....+++.|.+.|+.++..+.+..++..++.|..+.+|++.     .|..++.+.+|...|..+..++||++.++++.|+
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~   85 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG   85 (315)
T ss_pred             eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence            34467888999999999999988888888888999999875     4567888899999999999999999999999999


Q ss_pred             cEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCC--CCEE
Q 038577          372 KVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQS--GEVI  449 (860)
Q Consensus       372 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l  449 (860)
                      .+++||+.+++..+.|.+|...|.+++|++|.+.+++|+.|.+|++|+.............+...+.++.|+|+  ..++
T Consensus        86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~I  165 (315)
T KOG0279|consen   86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPII  165 (315)
T ss_pred             eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEE
Confidence            99999999999999999999999999999999999999999999999986655444444433778999999998  7889


Q ss_pred             EEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEee
Q 038577          450 CAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRP  529 (860)
Q Consensus       450 ~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  529 (860)
                      +.++.|+ ++++||+++.+....+.+|.+.++.+++||||..+++|+.||.+.+||++.++. ....++...|.+++|+|
T Consensus       166 vs~s~Dk-tvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~-lysl~a~~~v~sl~fsp  243 (315)
T KOG0279|consen  166 VSASWDK-TVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN-LYSLEAFDIVNSLCFSP  243 (315)
T ss_pred             EEccCCc-eEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce-eEeccCCCeEeeEEecC
Confidence            9999999 999999999999999999999999999999999999999999999999999985 66678999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEE
Q 038577          530 DGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYD  609 (860)
Q Consensus       530 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd  609 (860)
                      +...|+.+.. ..|+|||+.++..+..++......           ......-...+++||+||..|++|-.|+.|++|.
T Consensus       244 nrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~-----------s~~~~~~~clslaws~dG~tLf~g~td~~irv~q  311 (315)
T KOG0279|consen  244 NRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGP-----------SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ  311 (315)
T ss_pred             CceeEeeccC-CceEEEeccchhhhhhcccccccc-----------ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence            9877777764 459999999999888776543211           0001112367899999999999999999999998


Q ss_pred             CC
Q 038577          610 VA  611 (860)
Q Consensus       610 ~~  611 (860)
                      +.
T Consensus       312 v~  313 (315)
T KOG0279|consen  312 VA  313 (315)
T ss_pred             ee
Confidence            75

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=3.7e-38  Score=289.63  Aligned_cols=331  Identities=17%  Similarity=0.279  Sum_probs=303.2

Q ss_pred             eccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEc
Q 038577          257 KDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEW  336 (860)
Q Consensus       257 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~  336 (860)
                      ...|..|...+.+++.+|+.+++++|+.|..-.+|++.++.....+.+|.+.|+++.|+.+|.+|+++.-+ |.|+||..
T Consensus        57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdms-G~v~v~~~  135 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMS-GKVLVFKV  135 (399)
T ss_pred             eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCC-ccEEEEEc
Confidence            46678899999999999999999999999999999999999999999999999999999999999999877 99999999


Q ss_pred             cCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEE
Q 038577          337 RSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVR  416 (860)
Q Consensus       337 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~  416 (860)
                      .++.....+...-..+.-+.|+|.+..|+.|+.||.+.+|.+.++...+.+.+|+.++++=.|.|+|+.++++..||+|+
T Consensus       136 stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~  215 (399)
T KOG0296|consen  136 STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTII  215 (399)
T ss_pred             ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEE
Confidence            99998888876667788999999999999999999999999999888999999999999999999999999999999999


Q ss_pred             EEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec--------CcccCeEEEEEcC-
Q 038577          417 AWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS--------GHEGPVHGLVFSP-  487 (860)
Q Consensus       417 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~--------~h~~~v~~l~~s~-  487 (860)
                      +|++.++.++..+.........++.++..+..+..|..++ .+++.+..+|+.+....        .+...+.++.+.| 
T Consensus       216 ~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~-~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~  294 (399)
T KOG0296|consen  216 VWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEG-VACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPS  294 (399)
T ss_pred             EEecCCCceeEEecccccCcCCccccccccceeEeccCCc-cEEEEccccceEEEecCCCCccccccchhhhhhhhhccc
Confidence            9999999999988877777788999999999999999988 89999999999887776        3444555555544 


Q ss_pred             --CCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCC
Q 038577          488 --TNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISG  565 (860)
Q Consensus       488 --~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  565 (860)
                        .-++.|+|+-||+|.|||+...+ ++....|..+|+.+.|-+ ..+|++++.+|.|+.||.++|+++.++.+|..   
T Consensus       295 ss~lpL~A~G~vdG~i~iyD~a~~~-~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~---  369 (399)
T KOG0296|consen  295 SSKLPLAACGSVDGTIAIYDLAAST-LRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQM---  369 (399)
T ss_pred             ccccchhhcccccceEEEEecccch-hheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCch---
Confidence              55778999999999999998876 677778999999999998 78999999999999999999999999999987   


Q ss_pred             CccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECC
Q 038577          566 GRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVA  611 (860)
Q Consensus       566 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~  611 (860)
                                       +|.+++++|+++++++++.|++.+||+++
T Consensus       370 -----------------~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  370 -----------------GILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             -----------------heeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence                             59999999999999999999999999875

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=6.7e-38  Score=277.39  Aligned_cols=296  Identities=26%  Similarity=0.437  Sum_probs=252.0

Q ss_pred             EEEEecCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEECC-----CCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCc
Q 038577          341 YILKQQGHYFDVNCLAYSPD-SQLLATGADDNKVKVWTVS-----SGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGT  414 (860)
Q Consensus       341 ~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~  414 (860)
                      ....+.+|.+.|+.++..+. ...+++++.|.++.+|++.     .|..++.+.+|+..|..+..++||++.++++.|+.
T Consensus         7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~   86 (315)
T KOG0279|consen    7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT   86 (315)
T ss_pred             eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence            34567899999999999887 5688899999999999875     46788999999999999999999999999999999


Q ss_pred             EEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC-cccCeEEEEEcCC--CCE
Q 038577          415 VRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG-HEGPVHGLVFSPT--NAT  491 (860)
Q Consensus       415 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~-h~~~v~~l~~s~~--~~~  491 (860)
                      +++||+.+++..+.+..+. ..+.++++++|.+.+++|+.|. +|.+|++........... |.+.|+|+.|+|+  ..+
T Consensus        87 lrlWDl~~g~~t~~f~GH~-~dVlsva~s~dn~qivSGSrDk-Tiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~  164 (315)
T KOG0279|consen   87 LRLWDLATGESTRRFVGHT-KDVLSVAFSTDNRQIVSGSRDK-TIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPI  164 (315)
T ss_pred             EEEEEecCCcEEEEEEecC-CceEEEEecCCCceeecCCCcc-eeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence            9999999998888877654 4899999999999999999999 999999885544443333 3789999999998  789


Q ss_pred             EEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccc
Q 038577          492 LASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTD  571 (860)
Q Consensus       492 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  571 (860)
                      +++++.|++|++||+++.+....+.+|.+.++.+++||||...++|+.||.+.+||++.++.++.+.+...         
T Consensus       165 Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~---------  235 (315)
T KOG0279|consen  165 IVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDI---------  235 (315)
T ss_pred             EEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCe---------
Confidence            99999999999999999988888889999999999999999999999999999999999999998887664         


Q ss_pred             cccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeecccccccceeeeccCCCCCCCCCCccccCC
Q 038577          572 RRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDD  651 (860)
Q Consensus       572 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  651 (860)
                                  |.+++|+|+.-+|+.+...+ |+|||++++..+..+....                  .|        
T Consensus       236 ------------v~sl~fspnrywL~~at~~s-IkIwdl~~~~~v~~l~~d~------------------~g--------  276 (315)
T KOG0279|consen  236 ------------VNSLCFSPNRYWLCAATATS-IKIWDLESKAVVEELKLDG------------------IG--------  276 (315)
T ss_pred             ------------EeeEEecCCceeEeeccCCc-eEEEeccchhhhhhccccc------------------cc--------
Confidence                        99999999988887765544 9999999998886554211                  00        


Q ss_pred             CCCccccccccccCccccCCCCCCCCCCCC-ccceeEEEECCCCCeEEEeccccEE-EEecC
Q 038577          652 NSDTEEGVEKQTRGKLDYDLPGALPNRGRP-TIQTKCLKIAPTGRNFVAATTEGVL-VYSID  711 (860)
Q Consensus       652 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~spdg~~~~~~~~~g~~-i~~~~  711 (860)
                                            .   ..+- .....++++++||.+++.+-.++++ +|.+.
T Consensus       277 ----------------------~---s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  277 ----------------------P---SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             ----------------------c---ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence                                  0   0000 1145789999999999999999965 88753

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=2.5e-35  Score=281.92  Aligned_cols=538  Identities=15%  Similarity=0.196  Sum_probs=401.7

Q ss_pred             eEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEE-eC--------CeEEEEeCCCCCc
Q 038577           56 CRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG-TG--------KLVQIWRSPGFKK  126 (860)
Q Consensus        56 ~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~-~~--------~~i~iwd~~~~~~  126 (860)
                      ..+-+-|.|..+....  +.+.+++++...+.....|...|.|++.+||...+|+| ..        ..+++||..+...
T Consensus        69 ~Nly~lptgE~vyfvA--~V~Vl~n~ee~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~T  146 (626)
T KOG2106|consen   69 NNLYLLPTGELVYFVA--AVGVLYNWEERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLST  146 (626)
T ss_pred             ceeEEccCccEEEEec--cEEEEEeehhhhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccccee
Confidence            3456778888776554  46778888887777777899999999999999999988 11        3799999776552


Q ss_pred             ccceeEEEEEeeccCCCeEEEEEcC--CCCeEEEe--ecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCC
Q 038577          127 EVFAFELIRTLADCNDKVTALNWSP--DSNYLLVG--SKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKK  202 (860)
Q Consensus       127 ~~~~~~~~~~~~~h~~~v~~l~~s~--d~~~l~s~--~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~  202 (860)
                             +..+......|+|++||+  .|.+|...  +.+..+.|||...+      .........+..+..+.|.|.+.
T Consensus       147 -------L~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~------~~~~~vk~sne~v~~a~FHPtd~  213 (626)
T KOG2106|consen  147 -------LHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKK------AKLGPVKTSNEVVFLATFHPTDP  213 (626)
T ss_pred             -------eeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhh------hccCcceeccceEEEEEeccCCC
Confidence                   455666677899999998  34555554  45567899999887      44555666778889999999988


Q ss_pred             CCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecccc-CCCCceEEEEecCCCCEEEE
Q 038577          203 TDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFS-QAPSKVTACDYHRGLDMVVV  281 (860)
Q Consensus       203 ~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~  281 (860)
                           .++.....+.+.+|+.+++....                         +...+. .....|.|++|.++|+ +++
T Consensus       214 -----nliit~Gk~H~~Fw~~~~~~l~k-------------------------~~~~fek~ekk~Vl~v~F~engd-viT  262 (626)
T KOG2106|consen  214 -----NLIITCGKGHLYFWTLRGGSLVK-------------------------RQGIFEKREKKFVLCVTFLENGD-VIT  262 (626)
T ss_pred             -----cEEEEeCCceEEEEEccCCceEE-------------------------EeeccccccceEEEEEEEcCCCC-EEe
Confidence                 56666668899999988754310                         111111 1225799999999997 789


Q ss_pred             EEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEE--EecCcccCeEEEEEcC
Q 038577          282 GFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYIL--KQQGHYFDVNCLAYSP  359 (860)
Q Consensus       282 ~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~--~~~~~~~~v~~~~~s~  359 (860)
                      |..+|.|.+|+..+.+..+....|.+.|.+++.-.+|..+-  +..|..|..|| ..-+.+.  +++...++|+.++-..
T Consensus       263 gDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS--GgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~  339 (626)
T KOG2106|consen  263 GDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS--GGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGK  339 (626)
T ss_pred             ecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee--cCccceEEecc-ccccccccccCchhcCCeeEEecCC
Confidence            99999999999988888887779999999999999998776  55669999999 3222222  2345567788776543


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEE
Q 038577          360 DSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVS  439 (860)
Q Consensus       360 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  439 (860)
                      .+  |++|...+.|..=.++++..+..+ +|....+.++.+|+...+++++.|+.+++|+  ..+.......  ..+..+
T Consensus       340 ~d--i~vGTtrN~iL~Gt~~~~f~~~v~-gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~--~d~~~~  412 (626)
T KOG2106|consen  340 GD--ILVGTTRNFILQGTLENGFTLTVQ-GHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII--EDPAEC  412 (626)
T ss_pred             Cc--EEEeeccceEEEeeecCCceEEEE-ecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEe--cCceeE
Confidence            33  778888788887777777665544 7999999999999999999999999999999  4444443333  336789


Q ss_pred             EEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc--c
Q 038577          440 LASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF--P  517 (860)
Q Consensus       440 ~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~  517 (860)
                      +.|+|.| .+++|...| ...+.|.++...+..-.. ..++++++|+|+|.+||.|+.|+.|++|.+..........  -
T Consensus       413 ~~fhpsg-~va~Gt~~G-~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~  489 (626)
T KOG2106|consen  413 ADFHPSG-VVAVGTATG-RWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC  489 (626)
T ss_pred             eeccCcc-eEEEeeccc-eEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee
Confidence            9999999 999999988 999999999766665554 8899999999999999999999999999997765444433  2


Q ss_pred             cCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEE
Q 038577          518 HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYIL  597 (860)
Q Consensus       518 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~  597 (860)
                      +..+|+.+.||+|+++|.+-+.|-.|..|.....+.....+.-.-..........  .....++..|..++-+.+.++++
T Consensus       490 ~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~--v~g~s~~t~i~a~~rs~~~~~lA  567 (626)
T KOG2106|consen  490 SGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFE--VFGGSDGTDINAVARSHCEKLLA  567 (626)
T ss_pred             cCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEE--EecccCCchHHHhhhhhhhhhhh
Confidence            4589999999999999999999999999965554444432221111000111111  11245566788889999999999


Q ss_pred             EecCCCeEEEEECCCceEEEEEeecccccccceeeeccCCCCCCCCCCccccCCCCCccccccccccCccccCCCCCCCC
Q 038577          598 AGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPN  677 (860)
Q Consensus       598 ~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  677 (860)
                      +|.+.|.|++|..+--+....+                                                        .+
T Consensus       568 ~gdd~g~v~lf~yPc~s~rA~~--------------------------------------------------------he  591 (626)
T KOG2106|consen  568 SGDDFGKVHLFSYPCSSPRAPS--------------------------------------------------------HE  591 (626)
T ss_pred             ccccCceEEEEccccCCCcccc--------------------------------------------------------ee
Confidence            9999999999986533211100                                                        01


Q ss_pred             CCCCccceeEEEECCCCCeEEEecccc-EEEEec
Q 038577          678 RGRPTIQTKCLKIAPTGRNFVAATTEG-VLVYSI  710 (860)
Q Consensus       678 ~~~~~~~~~~~~~spdg~~~~~~~~~g-~~i~~~  710 (860)
                      -..+...+++++|.-+..+|++.+.|. +..|.+
T Consensus       592 ~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  592 YGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             eccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence            223455799999999988888777766 557875

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.5e-37  Score=295.03  Aligned_cols=324  Identities=23%  Similarity=0.426  Sum_probs=292.0

Q ss_pred             CCCCceEEEEecCCCC-EEEEEEcCCeEEEEECCCce----eEEEE----------eecCceeEEEEEeeCCCEEEEEEc
Q 038577          262 QAPSKVTACDYHRGLD-MVVVGFSNGVFGLYQMPDFV----CIHLL----------SISREKITTAVFNELGNWLVFGCA  326 (860)
Q Consensus       262 ~~~~~v~~~~~~~~~~-~l~~~~~~g~i~~~~~~~~~----~~~~~----------~~~~~~i~~~~~s~~~~~l~~~~~  326 (860)
                      .|..+|.+++|+|-.. .+++|+.+-..++|++....    ....+          ......|++++|+.+|..|+++..
T Consensus       176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~  255 (524)
T KOG0273|consen  176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE  255 (524)
T ss_pred             cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence            3888999999999887 88999999999999987411    10011          112357999999999999999987


Q ss_pred             cCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEE
Q 038577          327 KLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSL  406 (860)
Q Consensus       327 ~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l  406 (860)
                      + |.+++|+. ++..+..+..|.++|.++.|+.+|.+|++++.|+++.+||..++...+.+.-|..+-.++.|-.+ ..+
T Consensus       256 ~-G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F  332 (524)
T KOG0273|consen  256 D-GEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEF  332 (524)
T ss_pred             C-cEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceE
Confidence            7 99999996 45666777889999999999999999999999999999999999999999999998788899654 479


Q ss_pred             EEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEc
Q 038577          407 LSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFS  486 (860)
Q Consensus       407 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s  486 (860)
                      ++++.|+.|+++.+...++..++.. +...|.++.|+|.|.+|++++.|+ ++++|++........+.+|...|..+.|+
T Consensus       333 ~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~-TlkiWs~~~~~~~~~l~~Hskei~t~~ws  410 (524)
T KOG0273|consen  333 ATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPTGSLLASCSDDG-TLKIWSMGQSNSVHDLQAHSKEIYTIKWS  410 (524)
T ss_pred             eecCCCceEEEEEecCCCcceeeec-ccCceEEEEECCCCceEEEecCCC-eeEeeecCCCcchhhhhhhccceeeEeec
Confidence            9999999999999999999999988 667999999999999999999999 99999999999999999999999999999


Q ss_pred             CCC---------CEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEE
Q 038577          487 PTN---------ATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTI  557 (860)
Q Consensus       487 ~~~---------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  557 (860)
                      |+|         ..+++++.|++|++||+..+.++..+..|..+|.+++|||+|+++|+|+.||.|++|+.++++..+..
T Consensus       411 p~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~  490 (524)
T KOG0273|consen  411 PTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY  490 (524)
T ss_pred             CCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEee
Confidence            975         36999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECC
Q 038577          558 EGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVA  611 (860)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~  611 (860)
                      .+...                     |..++|+.+|.+|..+-.|+.+++-|+.
T Consensus       491 ~~~~~---------------------Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  491 QGTGG---------------------IFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             cCCCe---------------------EEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            87664                     8999999999999999999999998874

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.8e-37  Score=294.39  Aligned_cols=322  Identities=19%  Similarity=0.268  Sum_probs=286.5

Q ss_pred             CCccCeeEEEEcCCCC-EEEEEcCCCcEEEEEcccC----eEEEEee-----------cCCceeEEEECCCCCEEEEE-e
Q 038577           50 ESSSNICRIAVSPDGT-FLLTVDENQRCHFINLHCH----VVLHRVR-----------FKYPVNAILFSPNGKYIAVG-T  112 (860)
Q Consensus        50 ~h~~~v~~va~spdg~-~la~~~~d~~i~vwd~~~~----~~~~~~~-----------~~~~v~~~~fspdg~~la~~-~  112 (860)
                      +|..+|.+.+|+|-.. .+|+++.+-..++|++...    .....++           ....|++++|+.+|.+||+| .
T Consensus       176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~  255 (524)
T KOG0273|consen  176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE  255 (524)
T ss_pred             cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence            4999999999999776 8999999999999998751    1111111           34679999999999999999 8


Q ss_pred             CCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcE
Q 038577          113 GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSV  192 (860)
Q Consensus       113 ~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i  192 (860)
                      +|.++||+..+..        +.++..|+++|.++.|+.+|.||++++.|+++.+||..++      .....+.-|..+-
T Consensus       256 ~G~~riw~~~G~l--------~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g------~~~q~f~~~s~~~  321 (524)
T KOG0273|consen  256 DGEARIWNKDGNL--------ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG------TVKQQFEFHSAPA  321 (524)
T ss_pred             CcEEEEEecCchh--------hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc------eEEEeeeeccCCc
Confidence            9999999998874        6788999999999999999999999999999999999988      6678888898887


Q ss_pred             EEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEe
Q 038577          193 VGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDY  272 (860)
Q Consensus       193 ~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  272 (860)
                      ..+.|-.+.      .+++++.|+.|+++.+....+                            ...+.+|.+.|.++.|
T Consensus       322 lDVdW~~~~------~F~ts~td~~i~V~kv~~~~P----------------------------~~t~~GH~g~V~alk~  367 (524)
T KOG0273|consen  322 LDVDWQSND------EFATSSTDGCIHVCKVGEDRP----------------------------VKTFIGHHGEVNALKW  367 (524)
T ss_pred             cceEEecCc------eEeecCCCceEEEEEecCCCc----------------------------ceeeecccCceEEEEE
Confidence            888887776      599999999999999887543                            4556779999999999


Q ss_pred             cCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCC---------CEEEEEEccCCcEEEEEccCceEEE
Q 038577          273 HRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELG---------NWLVFGCAKLGQLLVWEWRSESYIL  343 (860)
Q Consensus       273 ~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~---------~~l~~~~~~~g~i~v~d~~~~~~~~  343 (860)
                      .|.+.+|++++.|+++++|+.........++.|...|..+.|+|+|         ..++.++. +++|++||+..+.++.
T Consensus       368 n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~-dstV~lwdv~~gv~i~  446 (524)
T KOG0273|consen  368 NPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF-DSTVKLWDVESGVPIH  446 (524)
T ss_pred             CCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec-CCeEEEEEccCCceeE
Confidence            9999999999999999999999999999999999999999999976         34455544 5999999999999999


Q ss_pred             EecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcc
Q 038577          344 KQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLF  421 (860)
Q Consensus       344 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~  421 (860)
                      .+..|..+|.+++|+|+|+++|+|+.||.|.+|+.++++..+.+.+ .+.|..++|+.+|.++..+-.|+.+++.|++
T Consensus       447 ~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  447 TLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             eeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            9999999999999999999999999999999999999999998864 5669999999999999999999999999875

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=6.4e-37  Score=281.50  Aligned_cols=330  Identities=19%  Similarity=0.264  Sum_probs=292.9

Q ss_pred             EEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEc
Q 038577          134 IRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIA  213 (860)
Q Consensus       134 ~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~  213 (860)
                      +..+..|++.|.+++.+|+.+++++|+.|..-.+|++.++      .....+.+|++.|+++.|+.++.     +|++++
T Consensus        57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g------e~~~eltgHKDSVt~~~Fshdgt-----lLATGd  125 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG------EFAGELTGHKDSVTCCSFSHDGT-----LLATGD  125 (399)
T ss_pred             eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC------cceeEecCCCCceEEEEEccCce-----EEEecC
Confidence            5778899999999999999999999999999999999999      67899999999999999999999     999999


Q ss_pred             CCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEEC
Q 038577          214 RDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQM  293 (860)
Q Consensus       214 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~  293 (860)
                      .+|.|++|+..++..                      .|.+.      .....+.-+.|+|.+..|++|+.||.+.+|.+
T Consensus       126 msG~v~v~~~stg~~----------------------~~~~~------~e~~dieWl~WHp~a~illAG~~DGsvWmw~i  177 (399)
T KOG0296|consen  126 MSGKVLVFKVSTGGE----------------------QWKLD------QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI  177 (399)
T ss_pred             CCccEEEEEcccCce----------------------EEEee------cccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence            999999999998754                      44332      44567899999999999999999999999999


Q ss_pred             CCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecC-cccCeEEEEEcCCCCEEEEEeCCCc
Q 038577          294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQG-HYFDVNCLAYSPDSQLLATGADDNK  372 (860)
Q Consensus       294 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~  372 (860)
                      ++....+.+.+|..++++-.|.|+|+.++++..+ |+|++|+..++.++..... ......++.++..+..++.|..++.
T Consensus       178 p~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d-gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~  256 (399)
T KOG0296|consen  178 PSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD-GTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGV  256 (399)
T ss_pred             CCcceeeEecCCCCCcccccccCCCceEEEEecC-ceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCcc
Confidence            9998999999999999999999999999999875 9999999999999888753 3456788999999999999999999


Q ss_pred             EEEEECCCCeeEEEee--------cCCCceEEEEEee---CCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEE
Q 038577          373 VKVWTVSSGFCFVTFT--------EHTNAVTALHFMA---NNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLA  441 (860)
Q Consensus       373 i~iwd~~~~~~~~~~~--------~~~~~v~~i~~~~---~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  441 (860)
                      +++-+..+|+.+....        .+...+.++.+.|   .-...++|+.||+|.+||+...+.......  ...|..+.
T Consensus       257 ~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~h--e~~V~~l~  334 (399)
T KOG0296|consen  257 ACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEH--EDGVTKLK  334 (399)
T ss_pred             EEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccC--CCceEEEE
Confidence            9999999998888776        3444555555544   446788999999999999988776555544  34689999


Q ss_pred             ECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 038577          442 SDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVF  507 (860)
Q Consensus       442 ~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~  507 (860)
                      |.+ ..+|++++.++ .|+.||.++|++...+.||...|.+++++|+.++++|+|.|++.+||++.
T Consensus       335 w~~-t~~l~t~c~~g-~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  335 WLN-TDYLLTACANG-KVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EcC-cchheeeccCc-eEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            999 88999999999 99999999999999999999999999999999999999999999999864

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=6.9e-36  Score=297.10  Aligned_cols=559  Identities=17%  Similarity=0.239  Sum_probs=398.2

Q ss_pred             cccccccCCcEEEe-CCC---EEEee-eCCeEEEEECCCCcE--EeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 038577            8 LLGAPYRGGNAVLS-QNT---KLISP-VGNRVSVTDLIKSKT--VTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFIN   80 (860)
Q Consensus         8 ~~g~~~~~~~~~~s-dg~---~l~~~-~~~~i~v~d~~~~~~--~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd   80 (860)
                      +-|+.-+...+.+- +.+   ++++| +|+.|.+|.++....  ...+.+|.  +.+++++...........|+.+.+||
T Consensus        50 l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~--~~~~cv~a~~~~~~~~~ad~~v~vw~  127 (764)
T KOG1063|consen   50 LDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHC--KECVCVVARSSVMTCKAADGTVSVWD  127 (764)
T ss_pred             ccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcc--eeEEEEEeeeeEEEeeccCceEEEee
Confidence            34444444455555 555   45555 678999999984443  23333444  45555554444444446789999999


Q ss_pred             cccCe--EEEEeec---CCceeEEEECCCC-CEE-EEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCC
Q 038577           81 LHCHV--VLHRVRF---KYPVNAILFSPNG-KYI-AVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPD  152 (860)
Q Consensus        81 ~~~~~--~~~~~~~---~~~v~~~~fspdg-~~l-a~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d  152 (860)
                      .+..+  ++..+..   ..--.|+++.|+. .++ |.| .+..|.++.-...     .+.....+.||.+.|.+++|..-
T Consensus       128 ~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d-----~f~~v~el~GH~DWIrsl~f~~~  202 (764)
T KOG1063|consen  128 KQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSAD-----SFARVAELEGHTDWIRSLAFARL  202 (764)
T ss_pred             cCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCc-----ceeEEEEeeccchhhhhhhhhcc
Confidence            96555  3333331   1223567777744 333 333 4445555544422     56678999999999999999875


Q ss_pred             C---CeEEEeecCCeEEEEeecccc-cC-------------ccc-cc----------ceEeecCCCcEEEEEEccCCCCC
Q 038577          153 S---NYLLVGSKDLAVRLFYVKEKL-KG-------------IHT-NK----------PFLLLGHRDSVVGCFFSVDKKTD  204 (860)
Q Consensus       153 ~---~~l~s~~~dg~v~vwd~~~~~-~~-------------~~~-~~----------~~~~~~h~~~i~~~~~~~~~~~~  204 (860)
                      +   -+||+++.|..||+|.+.... +.             ... ..          ...+.||.+.|.++.|+|.+.  
T Consensus       203 ~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~--  280 (764)
T KOG1063|consen  203 GGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGL--  280 (764)
T ss_pred             CCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchh--
Confidence            5   489999999999999986552 00             000 00          023459999999999999998  


Q ss_pred             ccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeec-cccCCCCceEEEEecCCCCEEEEEE
Q 038577          205 KVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKD-DFSQAPSKVTACDYHRGLDMVVVGF  283 (860)
Q Consensus       205 ~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~  283 (860)
                         .|++++.|.++.+|......                      +.|....+. ...+.........|+|+++.+++-+
T Consensus       281 ---~LLSASaDksmiiW~pd~~t----------------------GiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g  335 (764)
T KOG1063|consen  281 ---DLLSASADKSMIIWKPDENT----------------------GIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHG  335 (764)
T ss_pred             ---hheecccCcceEEEecCCcc----------------------ceEEEEEEeecccccccceeeEEEcCCCCEEEEec
Confidence               89999999999999887643                      367655432 2334455688999999999999999


Q ss_pred             cCCeEEEEECCC---ceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc----eEEEEecCcccCeEEEE
Q 038577          284 SNGVFGLYQMPD---FVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE----SYILKQQGHYFDVNCLA  356 (860)
Q Consensus       284 ~~g~i~~~~~~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~----~~~~~~~~~~~~v~~~~  356 (860)
                      ..|..++|...+   ......+.+|.+.|+.++|.|.|+++++++.+ .+-+++-.-..    ..+.+.+-|...++|++
T Consensus       336 ~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~D-QTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~  414 (764)
T KOG1063|consen  336 RTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLD-QTTRLFARWGRQQEWHEIARPQIHGYDLTCLS  414 (764)
T ss_pred             ccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccc-cceeeecccccccceeeecccccccccceeee
Confidence            999999999433   23445677899999999999999999999877 77777654311    23344466888899999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCC----------C---------------------------------ee----------
Q 038577          357 YSPDSQLLATGADDNKVKVWTVSS----------G---------------------------------FC----------  383 (860)
Q Consensus       357 ~s~~~~~l~~~~~dg~i~iwd~~~----------~---------------------------------~~----------  383 (860)
                      +-+....+++|.....+|+|+...          +                                 ..          
T Consensus       415 ~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~  494 (764)
T KOG1063|consen  415 FVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLA  494 (764)
T ss_pred             hccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccc
Confidence            998777889999889999997531          0                                 00          


Q ss_pred             -----------------------EEEeecCCCceEEEEEeeCCCEEEEEeCCC-----cEEEEEccccceeeEeeCCCCC
Q 038577          384 -----------------------FVTFTEHTNAVTALHFMANNHSLLSASLDG-----TVRAWDLFRYRNFRTFTTPSSR  435 (860)
Q Consensus       384 -----------------------~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg-----~i~~wd~~~~~~~~~~~~~~~~  435 (860)
                                             +..+.+|...|.+++.+|+++.+++++...     .|++|+..+......+.. +.-
T Consensus       495 ~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~-HsL  573 (764)
T KOG1063|consen  495 AAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG-HSL  573 (764)
T ss_pred             cCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc-cce
Confidence                                   011234889999999999999999988654     589999988877775554 445


Q ss_pred             cEEEEEECCCCCEEEEEecCCCeEEEEECCCCce----EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCC--
Q 038577          436 QFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRL----LDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEG--  509 (860)
Q Consensus       436 ~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~----~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--  509 (860)
                      .++.++|||||++|++.+.|. ++.+|.......    ....+.|..-|.+..|+|++.+++|+|.|++|++|.....  
T Consensus       574 TVT~l~FSpdg~~LLsvsRDR-t~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d  652 (764)
T KOG1063|consen  574 TVTRLAFSPDGRYLLSVSRDR-TVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRD  652 (764)
T ss_pred             EEEEEEECCCCcEEEEeecCc-eEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchh
Confidence            899999999999999999999 999999764322    2346789999999999999999999999999999998877  


Q ss_pred             ccee--EEcccCCCeEEEEEee-----CCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCC
Q 038577          510 KGSV--ESFPHTHDVLTVVYRP-----DGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGK  582 (860)
Q Consensus       510 ~~~~--~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  582 (860)
                      +.+.  ....+...|+++++.|     .+..+++|-..|.|.+|....-....+.-.+.        ..........+..
T Consensus       653 ~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~  724 (764)
T KOG1063|consen  653 KYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFN--------LDTRLCATIGPDS  724 (764)
T ss_pred             hhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeee--------eccccccccChHH
Confidence            3332  3446889999999988     23378999999999999865221111111000        0011112223345


Q ss_pred             cEEEEEEecC----------CCEEEEecCCCeEEEEECC
Q 038577          583 CFTTLCYSAD----------GSYILAGGSSKYICMYDVA  611 (860)
Q Consensus       583 ~i~~l~~s~~----------g~~l~~~~~dg~v~vwd~~  611 (860)
                      .|+.++|+|.          ...|+++++|..++++++.
T Consensus       725 aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  725 AVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             hhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence            6899999975          2356999999999999874

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.5e-35  Score=280.18  Aligned_cols=467  Identities=17%  Similarity=0.237  Sum_probs=357.2

Q ss_pred             eeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccC
Q 038577          249 VKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKL  328 (860)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~  328 (860)
                      .+.|+-............|.+++|+|...+=++.+..-.+.+|+..+......+......+.++.|..||+.++++... 
T Consensus        11 ~~~w~~~~~~~~~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~s-   89 (487)
T KOG0310|consen   11 IRYWRQETFPPVHKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDES-   89 (487)
T ss_pred             chhhhhhcccccccccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCc-
Confidence            3566666666666677899999999988776666667789999998888888888888899999999999999888766 


Q ss_pred             CcEEEEEccCceEEEEecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCC-CEE
Q 038577          329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANN-HSL  406 (860)
Q Consensus       329 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l  406 (860)
                      |.|+++|..+...+..+.+|..++..+.|+|++ ..+++|+.|+.+++||+.+......+.+|++.|.+.+|+|.. ..+
T Consensus        90 G~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hiv  169 (487)
T KOG0310|consen   90 GHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIV  169 (487)
T ss_pred             CcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEE
Confidence            999999988877788889999999999999965 567788889999999999998877999999999999999965 578


Q ss_pred             EEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEc
Q 038577          407 LSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFS  486 (860)
Q Consensus       407 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s  486 (860)
                      ++||.||.|++||++...                                           ..+..+. |..+|..+.+-
T Consensus       170 vtGsYDg~vrl~DtR~~~-------------------------------------------~~v~eln-hg~pVe~vl~l  205 (487)
T KOG0310|consen  170 VTGSYDGKVRLWDTRSLT-------------------------------------------SRVVELN-HGCPVESVLAL  205 (487)
T ss_pred             EecCCCceEEEEEeccCC-------------------------------------------ceeEEec-CCCceeeEEEc
Confidence            899999999999975421                                           1222333 88899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEccCCcceeEEc-ccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCC
Q 038577          487 PTNATLASSSWDKTVRLWNVFEGKGSVESF-PHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISG  565 (860)
Q Consensus       487 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  565 (860)
                      |.|..+|+++ ...|++||+.++....... .|...|+|+++..++..|++++-|+.+++||+.+.+.+..+.-..    
T Consensus       206 psgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~----  280 (487)
T KOG0310|consen  206 PSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG----  280 (487)
T ss_pred             CCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc----
Confidence            9999999987 4579999999665554444 499999999999999999999999999999999999999888765    


Q ss_pred             CccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeecccccccceeeeccCCCCCCCCCC
Q 038577          566 GRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPM  645 (860)
Q Consensus       566 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  645 (860)
                                       +|.+++.+||++.++.|..+|.+.+=+...++.-...+.                        
T Consensus       281 -----------------pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k~s~~~~------------------------  319 (487)
T KOG0310|consen  281 -----------------PVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKKPSKEPK------------------------  319 (487)
T ss_pred             -----------------ceeeEEecCCCceEEEecccceeeeehhhcccCCCcccc------------------------
Confidence                             499999999999999999999876653322211100000                        


Q ss_pred             ccccCCCCCccccccccccCccccCCCCCCCCCCCCccceeEEEECCCCCeEEEeccccEEEEecC-CccccCCcccCcc
Q 038577          646 DLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYSID-ESFIFDPTDLDID  724 (860)
Q Consensus       646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~i~~~~-~~~~~~~~~~~~~  724 (860)
                                           .         +..+             +..++......  .+..+ +....++..   .
T Consensus       320 ---------------------~---------r~~r-------------~~~~~v~~r~~--~~~~~~ddiv~n~~~---r  351 (487)
T KOG0310|consen  320 ---------------------R---------RADR-------------SDGFFVKVRGQ--NYKGQKDDIVVNEVK---R  351 (487)
T ss_pred             ---------------------c---------cccc-------------cccceEeeecc--ccccccceeEecccc---c
Confidence                                 0         0000             00000000000  00000 000000000   0


Q ss_pred             CCHHHHHhhcCcCCcHHHHHHHHh-cCChHHHHHHhHhcCC-CccchhcccCCHHHHHHHHHHHHhhhccCCChhhHHHH
Q 038577          725 VTPEAVDAALNEDQPKRALILSLR-LNEDNLIKKCIFAISP-VDIPAVASSIPYRYMQRLIEALSDLLESCPHLEFMLRW  802 (860)
Q Consensus       725 ~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~-~~i~~~~~~l~~~~~~~ll~~l~~~l~~~~~~~~~~~~  802 (860)
                      .......+.++.-.+.++|...++ ..+.+++..+|+.+-. -.+..++.-....++..||.||.+.+...+.+++++.|
T Consensus       352 ~~L~~~Dk~Lk~F~~kkALd~vl~~~~~pelvvavl~eL~~Rg~l~~AL~grde~eL~~lLnfl~~~l~~~rf~~~L~~~  431 (487)
T KOG0310|consen  352 LKLTYFDKRLKQFKHKKALDHVLEPKKDPELVVAVLSELVHRGGLRRALAGRDESELAPLLNFLVKNLTVVRFASILMEV  431 (487)
T ss_pred             cCCchHHHHHhhhhHHHHHHHHhcccCChhHHHHHHHHHHHhhHHHHHhcCccHHHHHHHHHHHHhhccchhhHHHHHHH
Confidence            112233445566688889999998 7888999999888775 67788999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHhhc
Q 038577          803 CQELCKTHGNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSV  856 (860)
Q Consensus       803 l~~~l~~H~~~l~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~  856 (860)
                      ...+|-+.+..|...+ .+.+.+..|+..+++.... ++.+.+...+|+-|-++
T Consensus       432 ~~~iLd~Y~~~i~~s~-~l~k~i~~L~~~V~~Ev~~-q~ellr~~G~ldmL~~~  483 (487)
T KOG0310|consen  432 VSVILDLYARDIEGSP-MLAKLIQALRGKVEQEVRV-QKELLRLIGMLDMLGSI  483 (487)
T ss_pred             HHHHHHHHHhhhccCH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHh
Confidence            9999999999998876 8888999999999888544 44444555666655443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-34  Score=293.98  Aligned_cols=498  Identities=15%  Similarity=0.189  Sum_probs=363.3

Q ss_pred             CCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee-cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcc
Q 038577           50 ESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKE  127 (860)
Q Consensus        50 ~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~  127 (860)
                      ..+..|..++|+|...++.++-.+|.|.+||..-+.++.++. |.++|+.++|+|++.++++| .|..|+||+..+.+  
T Consensus         7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr--   84 (1202)
T KOG0292|consen    7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR--   84 (1202)
T ss_pred             cccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce--
Confidence            355779999999999999999999999999999999999998 99999999999999999999 67899999999887  


Q ss_pred             cceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccc
Q 038577          128 VFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVN  207 (860)
Q Consensus       128 ~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~  207 (860)
                           ++.++.||-+.|..+.|++.-.+++++|.|.+|+||+..++      .+...+.||...|.|..|+|...     
T Consensus        85 -----clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr------~~iavltGHnHYVMcAqFhptED-----  148 (1202)
T KOG0292|consen   85 -----CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR------KCIAVLTGHNHYVMCAQFHPTED-----  148 (1202)
T ss_pred             -----ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC------ceEEEEecCceEEEeeccCCccc-----
Confidence                 68899999999999999999999999999999999999999      78999999999999999999888     


Q ss_pred             eEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCC-cceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCC
Q 038577          208 RIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTP-ERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNG  286 (860)
Q Consensus       208 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g  286 (860)
                      .++++|-|.+|++||+.+-..+.......++....... ..-.+.-+..-+..+.+|...|..++|+|.-..+++|+.|.
T Consensus       149 lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDR  228 (1202)
T KOG0292|consen  149 LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDR  228 (1202)
T ss_pred             eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcc
Confidence            99999999999999998754322221111111111101 01112224455778899999999999999999999999999


Q ss_pred             eEEEEECCCce--eEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEE
Q 038577          287 VFGLYQMPDFV--CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLL  364 (860)
Q Consensus       287 ~i~~~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  364 (860)
                      .|++|.+...+  .+.+.++|.+.|.++-|+|..+.+++.+.+ +.|+|||+...+.+..++......++++.+|..+.+
T Consensus       229 qVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsED-ksirVwDm~kRt~v~tfrrendRFW~laahP~lNLf  307 (1202)
T KOG0292|consen  229 QVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSED-KSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLF  307 (1202)
T ss_pred             eeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCC-ccEEEEecccccceeeeeccCCeEEEEEecCCccee
Confidence            99999986544  356678899999999999988888777665 999999999999999998778889999999999988


Q ss_pred             EEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCC----CcEEEE
Q 038577          365 ATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSS----RQFVSL  440 (860)
Q Consensus       365 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~----~~~~~~  440 (860)
                      +.|.. +-+.+|.++...          +..+  .+  ++.|.-.- |..|+.+|+.+.+..........    .++.++
T Consensus       308 AAgHD-sGm~VFkleREr----------pa~~--v~--~n~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~sm  371 (1202)
T KOG0292|consen  308 AAGHD-SGMIVFKLERER----------PAYA--VN--GNGLFYVK-DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSL  371 (1202)
T ss_pred             eeecC-CceEEEEEcccC----------ceEE--Ec--CCEEEEEc-cceEEeeeccccccceeEeccCCCcccCCccee
Confidence            87654 556677665322          2222  22  22333333 88999999988665554443332    467889


Q ss_pred             EECCCCCEEEEE-ecCCCeEEEEECCCCceE----EEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEE
Q 038577          441 ASDQSGEVICAG-TLDSFEIFVWSMKTGRLL----DILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVES  515 (860)
Q Consensus       441 ~~~~~~~~l~~~-~~~~~~i~v~d~~~~~~~----~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  515 (860)
                      .++|....+..+ ..+++.-.++.+......    .... .......+ |-..+++.+.--.+..+.+-++.+.. . ..
T Consensus       372 sYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~-k~tG~~a~-fvarNrfavl~k~~~~v~ik~l~N~v-t-kk  447 (1202)
T KOG0292|consen  372 SYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVK-KGTGEGAL-FVARNRFAVLDKSNEQVVIKNLKNKV-T-KK  447 (1202)
T ss_pred             eeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhh-cCCCCceE-EEEecceEEEEecCcceEEecccchh-h-hc
Confidence            999987766555 334445555554422110    0000 01111112 22222222222224445555543322 1 11


Q ss_pred             cccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCE
Q 038577          516 FPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSY  595 (860)
Q Consensus       516 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~  595 (860)
                      ......+..+.+.-.|.+|+..  ...|.+||+...+.+..++...                      +..++||+|..+
T Consensus       448 l~~~~~~~~IF~ag~g~lll~~--~~~v~lfdvQq~~~~~si~~s~----------------------vkyvvws~dm~~  503 (1202)
T KOG0292|consen  448 LLLPESTDDIFYAGTGNLLLRS--PDSVTLFDVQQKKKVGSIKVSK----------------------VKYVVWSNDMSR  503 (1202)
T ss_pred             ccCcccccceeeccCccEEEEc--CCeEEEEEeecceEEEEEecCc----------------------eeEEEEcCccch
Confidence            1222345566666677665554  4469999999998888887654                      789999999988


Q ss_pred             EEEecCCCeEEEEECC
Q 038577          596 ILAGGSSKYICMYDVA  611 (860)
Q Consensus       596 l~~~~~dg~v~vwd~~  611 (860)
                      ++--+. .+|.|.+..
T Consensus       504 vAll~K-h~i~i~~kk  518 (1202)
T KOG0292|consen  504 VALLSK-HTITIADKK  518 (1202)
T ss_pred             hhhccc-ceEEEEecc
Confidence            776543 456666643

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.2e-34  Score=280.02  Aligned_cols=458  Identities=11%  Similarity=0.127  Sum_probs=346.9

Q ss_pred             ccCCcEEEe-CCCEEEee-eCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEe
Q 038577           13 YRGGNAVLS-QNTKLISP-VGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRV   90 (860)
Q Consensus        13 ~~~~~~~~s-dg~~l~~~-~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~   90 (860)
                      -+..++.|. -.-+++++ -.|.|.|||.++...+..+.-..-+|.+..|-+..+++++|+.|.+|+|++..+++.+..+
T Consensus        14 dRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~F   93 (794)
T KOG0276|consen   14 DRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTF   93 (794)
T ss_pred             CceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEe
Confidence            345567777 66666665 5789999999999998888777889999999999999999999999999999999999999


Q ss_pred             e-cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcC-CCCeEEEeecCCeEEE
Q 038577           91 R-FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSP-DSNYLLVGSKDLAVRL  167 (860)
Q Consensus        91 ~-~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-d~~~l~s~~~dg~v~v  167 (860)
                      . |..-|++++.+|...++.++ .|-.|++||++.+-      .+.+++.||...|.+++|.| |.+.+|+++-|++|+|
T Consensus        94 eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w------a~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKV  167 (794)
T KOG0276|consen   94 EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW------ACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKV  167 (794)
T ss_pred             eccccceeeeeecCCCCeEEecCCccEEEEeeccCce------eeeeEEcCcceEEEEEEecCCCccceeeeeccccEEE
Confidence            8 99999999999999999999 66799999998753      47899999999999999999 5589999999999999


Q ss_pred             EeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcc
Q 038577          168 FYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPER  247 (860)
Q Consensus       168 wd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (860)
                      |.+...      ....++.+|...|+++.|-+.|.   ..+|+++++|.++++||..+..+                   
T Consensus       168 Wslgs~------~~nfTl~gHekGVN~Vdyy~~gd---kpylIsgaDD~tiKvWDyQtk~C-------------------  219 (794)
T KOG0276|consen  168 WSLGSP------HPNFTLEGHEKGVNCVDYYTGGD---KPYLISGADDLTIKVWDYQTKSC-------------------  219 (794)
T ss_pred             EEcCCC------CCceeeeccccCcceEEeccCCC---cceEEecCCCceEEEeecchHHH-------------------
Confidence            999988      77899999999999999987663   23999999999999999998654                   


Q ss_pred             eeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEcc
Q 038577          248 RVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK  327 (860)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~  327 (860)
                               ...+.+|...|.++.|+|.-..+++|+.||++++|+..+.+...++...-+++.+++-.+.+..++++..+
T Consensus       220 ---------V~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~De  290 (794)
T KOG0276|consen  220 ---------VQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDE  290 (794)
T ss_pred             ---------HHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccC
Confidence                     56778999999999999999999999999999999999999999999999999999999988888877654


Q ss_pred             CCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEE---------ECCCCeeEE----EeecCCCce
Q 038577          328 LGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVW---------TVSSGFCFV----TFTEHTNAV  394 (860)
Q Consensus       328 ~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw---------d~~~~~~~~----~~~~~~~~v  394 (860)
                       |.+.+ .+          +...  ..+..++.|+.+-+...  .|.--         ++..|+.+.    .+....--.
T Consensus       291 -g~i~v-~l----------gree--P~vsMd~~gKIiwa~~~--ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyP  354 (794)
T KOG0276|consen  291 -GSVTV-KL----------GREE--PAVSMDSNGKIIWAVHS--EIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYP  354 (794)
T ss_pred             -CcEEE-Ec----------cCCC--CceeecCCccEEEEcCc--eeeeeeceeccCcccccCCccccchhhhccccccch
Confidence             65543 22          1222  23344455554443322  22222         223333221    111111223


Q ss_pred             EEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec
Q 038577          395 TALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS  474 (860)
Q Consensus       395 ~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~  474 (860)
                      ..++-+|+|+.++.+ .||.-.+|..-.      +....-.....+.|.+|.+..++-..++ .|.++  ++.+..+.+.
T Consensus       355 q~L~hsPNGrfV~Vc-gdGEyiIyTala------~RnK~fG~~~eFvw~~dsne~avRes~~-~vki~--knfke~ksi~  424 (794)
T KOG0276|consen  355 QTLAHSPNGRFVVVC-GDGEYIIYTALA------LRNKAFGSGLEFVWAADSNEFAVRESNG-NVKIF--KNFKEHKSIR  424 (794)
T ss_pred             HHhccCCCCcEEEEe-cCccEEEEEeee------hhhcccccceeEEEcCCCCeEEEEecCC-ceEEE--ecceeccccc
Confidence            456778999766655 578888876322      1222333457788999977777766666 77777  5666655554


Q ss_pred             CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeC
Q 038577          475 GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDP  548 (860)
Q Consensus       475 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  548 (860)
                      ....    ...--.|.+|...+ ++.+++||..++..+..+...   ...+.|+.+|.+++.++.+. .+++..
T Consensus       425 ~~~~----~e~i~gg~Llg~~s-s~~~~fydW~~~~lVrrI~v~---~k~v~w~d~g~lVai~~d~S-fyil~~  489 (794)
T KOG0276|consen  425 PDMS----AEGIFGGPLLGVRS-SDFLCFYDWESGELVRRIEVT---SKHVYWSDNGELVAIAGDDS-FYILKF  489 (794)
T ss_pred             cccc----eeeecCCceEEEEe-CCeEEEEEcccceEEEEEeec---cceeEEecCCCEEEEEecCc-eeEEEe
Confidence            2211    11112355555554 667999999999865554432   35688999999999888665 444443

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.3e-36  Score=276.59  Aligned_cols=291  Identities=23%  Similarity=0.389  Sum_probs=269.0

Q ss_pred             eeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038577          297 VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVW  376 (860)
Q Consensus       297 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  376 (860)
                      ...+.+.++..+|+.+-|.|+-..+++++. +++|++||..+++....+++|...+..++|+..|+++++++.|=.+++|
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~-d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW  177 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHPSEALVVSASE-DATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLW  177 (406)
T ss_pred             CchhhhhccccceeeeeeccCceEEEEecC-CceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhe
Confidence            445556678889999999998777766655 4999999999999999999999999999999999999999999889999


Q ss_pred             ECCC-CeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecC
Q 038577          377 TVSS-GFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLD  455 (860)
Q Consensus       377 d~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  455 (860)
                      |..+ .+++..+.+|...|.+++|-|.|.++++++.|.+|+.|++.++-++.++..+.. .+..+..+.||.++++++.+
T Consensus       178 d~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e-wvr~v~v~~DGti~As~s~d  256 (406)
T KOG0295|consen  178 DFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE-WVRMVRVNQDGTIIASCSND  256 (406)
T ss_pred             eHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH-hEEEEEecCCeeEEEecCCC
Confidence            9986 577788889999999999999999999999999999999999999999987765 88999999999999999999


Q ss_pred             CCeEEEEECCCCceEEEecCcccCeEEEEEcCC---------------CCEEEEEeCCCcEEEEEccCCcceeEEcccCC
Q 038577          456 SFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPT---------------NATLASSSWDKTVRLWNVFEGKGSVESFPHTH  520 (860)
Q Consensus       456 ~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~---------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  520 (860)
                      . ++++|-+.+++....++.|+-+|.+++|.|.               ++++.+++.|++|++||+.++.++.++.+|..
T Consensus       257 q-tl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdn  335 (406)
T KOG0295|consen  257 Q-TLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDN  335 (406)
T ss_pred             c-eEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccc
Confidence            9 9999999999999999999999999999763               25899999999999999999999999999999


Q ss_pred             CeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEec
Q 038577          521 DVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGG  600 (860)
Q Consensus       521 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~  600 (860)
                      .|..++|+|.|+||+++.+|+++++||++++++..+++.|..                    .++++.|..+..|+++|+
T Consensus       336 wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--------------------fvt~lDfh~~~p~VvTGs  395 (406)
T KOG0295|consen  336 WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--------------------FVTSLDFHKTAPYVVTGS  395 (406)
T ss_pred             eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--------------------eeEEEecCCCCceEEecc
Confidence            999999999999999999999999999999999999998876                    489999999999999999


Q ss_pred             CCCeEEEEEC
Q 038577          601 SSKYICMYDV  610 (860)
Q Consensus       601 ~dg~v~vwd~  610 (860)
                      -|..+++|.-
T Consensus       396 Vdqt~KvwEc  405 (406)
T KOG0295|consen  396 VDQTVKVWEC  405 (406)
T ss_pred             ccceeeeeec
Confidence            9999999964

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=5.8e-36  Score=303.84  Aligned_cols=279  Identities=22%  Similarity=0.383  Sum_probs=242.3

Q ss_pred             cCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce
Q 038577          261 SQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES  340 (860)
Q Consensus       261 ~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~  340 (860)
                      ......++|+.|++++.++|.|..|..|++|.+... .+..++.... +         ..+=..+. |-.+.+.|-.+..
T Consensus       375 ~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~~~~-l---------~~~d~~sa-d~~~~~~D~~~~~  442 (707)
T KOG0263|consen  375 HNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKDASD-L---------SNIDTESA-DVDVDMLDDDSSG  442 (707)
T ss_pred             EEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccchhh-h---------cccccccc-chhhhhccccCCc
Confidence            344567899999999999999999999999999643 2222221110 0         00101111 1335566666666


Q ss_pred             EEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 038577          341 YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDL  420 (860)
Q Consensus       341 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~  420 (860)
                      ....+.+|.++|....|+|+.++|++++.|+++|+|.+.+..++..+.+|..+|+.+.|+|.|-+++|++.|++.++|..
T Consensus       443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~  522 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST  522 (707)
T ss_pred             eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence            67778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCc
Q 038577          421 FRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKT  500 (860)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~  500 (860)
                      ......+.+..+. ..+.|+.|+|+..++++|+.|. ++++||+.+|..++.|.||.++|.+++|||+|++|++|+.||.
T Consensus       523 d~~~PlRifaghl-sDV~cv~FHPNs~Y~aTGSsD~-tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~  600 (707)
T KOG0263|consen  523 DHNKPLRIFAGHL-SDVDCVSFHPNSNYVATGSSDR-TVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL  600 (707)
T ss_pred             ccCCchhhhcccc-cccceEEECCcccccccCCCCc-eEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc
Confidence            9888887776554 4789999999999999999998 9999999999999999999999999999999999999999999


Q ss_pred             EEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCce
Q 038577          501 VRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGEL  553 (860)
Q Consensus       501 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  553 (860)
                      |.+||+.+++.+..+.+|.+.|.++.||.||..||+|+.|.+|++||+..-..
T Consensus       601 I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~  653 (707)
T KOG0263|consen  601 IKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE  653 (707)
T ss_pred             EEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence            99999999999999999999999999999999999999999999999865443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.3e-33  Score=281.79  Aligned_cols=462  Identities=13%  Similarity=0.180  Sum_probs=344.3

Q ss_pred             cCCcEEEe-CCCEEEeee-CCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee
Q 038577           14 RGGNAVLS-QNTKLISPV-GNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR   91 (860)
Q Consensus        14 ~~~~~~~s-dg~~l~~~~-~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~   91 (860)
                      +...++|- ..=+|+++- .|.|++||.+=+..+..+.+|.++|..++|+|++.++++|+.|-.|+||+.++.+++.++.
T Consensus        11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~   90 (1202)
T KOG0292|consen   11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLL   90 (1202)
T ss_pred             cccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhc
Confidence            45568888 777888875 5789999999999988888999999999999999999999999999999999999999887


Q ss_pred             -cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEe
Q 038577           92 -FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFY  169 (860)
Q Consensus        92 -~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd  169 (860)
                       |-.-|+.+.|++.-.+|.++ .|.+|+||++.+.+       ++..++||...|.|.+|.|....++++|-|.+|||||
T Consensus        91 GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~-------~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWD  163 (1202)
T KOG0292|consen   91 GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK-------CIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWD  163 (1202)
T ss_pred             cccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-------eEEEEecCceEEEeeccCCccceEEEecccceEEEEe
Confidence             99999999999999999999 67899999999988       6999999999999999999999999999999999999


Q ss_pred             ecccccCc-----------------------ccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCC
Q 038577          170 VKEKLKGI-----------------------HTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGN  226 (860)
Q Consensus       170 ~~~~~~~~-----------------------~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  226 (860)
                      +..-.++.                       .....+.+.||...|+-++|+|.-.     .+++|++|..|++|.++..
T Consensus       164 isGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-----liVSG~DDRqVKlWrmnet  238 (1202)
T KOG0292|consen  164 ISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-----LIVSGADDRQVKLWRMNET  238 (1202)
T ss_pred             ecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-----eEEecCCcceeeEEEeccc
Confidence            86542100                       1123367889999999999999988     9999999999999998763


Q ss_pred             CCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecC
Q 038577          227 DGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISR  306 (860)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~  306 (860)
                                             +.|.+   ....+|...|.++-|+|..+++++.+.|+.|++||+...+.+++++...
T Consensus       239 -----------------------KaWEv---DtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrren  292 (1202)
T KOG0292|consen  239 -----------------------KAWEV---DTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREN  292 (1202)
T ss_pred             -----------------------cceee---hhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccC
Confidence                                   46754   4567899999999999999999999999999999999999999999999


Q ss_pred             ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCee--E
Q 038577          307 EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFC--F  384 (860)
Q Consensus       307 ~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~  384 (860)
                      +....++.+|..+.++++..  +-+.+|.++..          .+..  +.+  ++.|.-.- |..|+.+|+.+.+.  +
T Consensus       293 dRFW~laahP~lNLfAAgHD--sGm~VFkleRE----------rpa~--~v~--~n~LfYvk-d~~i~~~d~~t~~d~~v  355 (1202)
T KOG0292|consen  293 DRFWILAAHPELNLFAAGHD--SGMIVFKLERE----------RPAY--AVN--GNGLFYVK-DRFIRSYDLRTQKDTAV  355 (1202)
T ss_pred             CeEEEEEecCCcceeeeecC--CceEEEEEccc----------CceE--EEc--CCEEEEEc-cceEEeeecccccccee
Confidence            99999999999998887754  45555554322          2222  333  22333333 78999999987443  2


Q ss_pred             EEeecC---CCceEEEEEeeCCCEEEEE-eCC-CcEEEEEccccc-----------------------------------
Q 038577          385 VTFTEH---TNAVTALHFMANNHSLLSA-SLD-GTVRAWDLFRYR-----------------------------------  424 (860)
Q Consensus       385 ~~~~~~---~~~v~~i~~~~~~~~l~s~-~~d-g~i~~wd~~~~~-----------------------------------  424 (860)
                      ..++..   ..++.++.++|..+.++.+ ..| |..-++.+.+..                                   
T Consensus       356 ~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v  435 (1202)
T KOG0292|consen  356 ASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQV  435 (1202)
T ss_pred             EeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcce
Confidence            333322   3678889999876554444 323 333344332110                                   


Q ss_pred             eeeEeeC------CCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCC
Q 038577          425 NFRTFTT------PSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWD  498 (860)
Q Consensus       425 ~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d  498 (860)
                      .++.+..      +.......+.+...|.+++... +  .|.+||++..+.+..++  ...|.-+.||+|..+++.-+ .
T Consensus       436 ~ik~l~N~vtkkl~~~~~~~~IF~ag~g~lll~~~-~--~v~lfdvQq~~~~~si~--~s~vkyvvws~dm~~vAll~-K  509 (1202)
T KOG0292|consen  436 VIKNLKNKVTKKLLLPESTDDIFYAGTGNLLLRSP-D--SVTLFDVQQKKKVGSIK--VSKVKYVVWSNDMSRVALLS-K  509 (1202)
T ss_pred             EEecccchhhhcccCcccccceeeccCccEEEEcC-C--eEEEEEeecceEEEEEe--cCceeEEEEcCccchhhhcc-c
Confidence            0000000      0001122233333444443322 2  68888888877777765  56678888888888777665 4


Q ss_pred             CcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEe
Q 038577          499 KTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACST  538 (860)
Q Consensus       499 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  538 (860)
                      .+|.|.+..-.  ........-.|.+-+|..+|-++++..
T Consensus       510 h~i~i~~kkL~--l~~sihEtiriksgawde~gVfiYtT~  547 (1202)
T KOG0292|consen  510 HTITIADKKLE--LLCSIHETIRIKSGAWDEDGVFIYTTL  547 (1202)
T ss_pred             ceEEEEecchh--heecchheeEeeeceeccCceEEEEeh
Confidence            56777774322  222233344577778887776666553

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.5e-36  Score=274.21  Aligned_cols=306  Identities=24%  Similarity=0.416  Sum_probs=265.7

Q ss_pred             EEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEE
Q 038577          133 LIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTI  212 (860)
Q Consensus       133 ~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~  212 (860)
                      +...+.+|...|+.+-|.|+-..+++++.|++|++||..++      .....++||.+.+..+.|+..|+     +++++
T Consensus       100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg------~~e~~LrGHt~sv~di~~~a~Gk-----~l~tc  168 (406)
T KOG0295|consen  100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG------ELERSLRGHTDSVFDISFDASGK-----YLATC  168 (406)
T ss_pred             chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccch------hhhhhhhccccceeEEEEecCcc-----EEEec
Confidence            56778899999999999999999999999999999999999      67899999999999999999999     99999


Q ss_pred             cCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEE
Q 038577          213 ARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQ  292 (860)
Q Consensus       213 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~  292 (860)
                      +.|-.+++||.++-                                                                  
T Consensus       169 SsDl~~~LWd~~~~------------------------------------------------------------------  182 (406)
T KOG0295|consen  169 SSDLSAKLWDFDTF------------------------------------------------------------------  182 (406)
T ss_pred             CCccchhheeHHHH------------------------------------------------------------------
Confidence            99988999987751                                                                  


Q ss_pred             CCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCc
Q 038577          293 MPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNK  372 (860)
Q Consensus       293 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  372 (860)
                         .+++..+.+|...|.+++|-|.|.++++++.+ .+|+.|+..++-++..+.+|...|..++.+.||.++++++.|.+
T Consensus       183 ---~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD-~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqt  258 (406)
T KOG0295|consen  183 ---FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRD-NTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQT  258 (406)
T ss_pred             ---HHHHHHhcCcccceeeEEEEecCCeeeecccc-cceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCce
Confidence               12233334445556666666666666666554 89999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEE
Q 038577          373 VKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAG  452 (860)
Q Consensus       373 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  452 (860)
                      +++|-+.++.+...+..|..+|.+++|.|...  ++...+.                 .+..         ..+.++.++
T Consensus       259 l~vW~~~t~~~k~~lR~hEh~vEci~wap~~~--~~~i~~a-----------------t~~~---------~~~~~l~s~  310 (406)
T KOG0295|consen  259 LRVWVVATKQCKAELREHEHPVECIAWAPESS--YPSISEA-----------------TGST---------NGGQVLGSG  310 (406)
T ss_pred             EEEEEeccchhhhhhhccccceEEEEeccccc--Ccchhhc-----------------cCCC---------CCccEEEee
Confidence            99999999999999999999999999998742  1110000                 0000         146688899


Q ss_pred             ecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCC
Q 038577          453 TLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGR  532 (860)
Q Consensus       453 ~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~  532 (860)
                      +.|+ +|++||+.++.++.++.+|...|..++|+|.|++|+++.+|+++++||+.+.++......|..-++++.|+.+..
T Consensus       311 SrDk-tIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p  389 (406)
T KOG0295|consen  311 SRDK-TIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAP  389 (406)
T ss_pred             cccc-eEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCc
Confidence            9999 999999999999999999999999999999999999999999999999999998888889999999999999999


Q ss_pred             EEEEEeCCCeEEEEeC
Q 038577          533 QLACSTLDGQIHFWDP  548 (860)
Q Consensus       533 ~l~~~~~dg~i~iwd~  548 (860)
                      ++++|+-|.++++|..
T Consensus       390 ~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  390 YVVTGSVDQTVKVWEC  405 (406)
T ss_pred             eEEeccccceeeeeec
Confidence            9999999999999974

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.4e-32  Score=273.58  Aligned_cols=501  Identities=14%  Similarity=0.137  Sum_probs=370.6

Q ss_pred             CccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee---cCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcc
Q 038577           51 SSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR---FKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKE  127 (860)
Q Consensus        51 h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~---~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~  127 (860)
                      ....|+++|+|.+.+.||.+-.+|.|.+|++..+=.....-   ....|.+++|++.++++-++.+|.|.-||+.++++ 
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~-  102 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQ-  102 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCce-
Confidence            34779999999999999999999999999999865444332   46679999999999999999999999999999884 


Q ss_pred             cceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccc
Q 038577          128 VFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVN  207 (860)
Q Consensus       128 ~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~  207 (860)
                            ...+....+.|++++.+|.+..++.|+.||.+...+...+ .-   .-...+...++.+.++.|.|++.     
T Consensus       103 ------~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~-~I---~~~r~l~rq~sRvLslsw~~~~~-----  167 (691)
T KOG2048|consen  103 ------KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPD-KI---TYKRSLMRQKSRVLSLSWNPTGT-----  167 (691)
T ss_pred             ------eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCc-eE---EEEeecccccceEEEEEecCCcc-----
Confidence                  6677778899999999999999999999996666666555 11   22344555679999999999998     


Q ss_pred             eEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecccc-CCCCceEEEEecCCCCEEEEEEcCC
Q 038577          208 RIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFS-QAPSKVTACDYHRGLDMVVVGFSNG  286 (860)
Q Consensus       208 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~g  286 (860)
                      .++.|+.||.|++||...+........+                     ...+. ....-|.++.+-.+ ..+++|...|
T Consensus       168 ~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~---------------------~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G  225 (691)
T KOG2048|consen  168 KIAGGSIDGVIRIWDVKSGQTLHIITMQ---------------------LDRLSKREPTIVWSVLFLRD-STIASGDSAG  225 (691)
T ss_pred             EEEecccCceEEEEEcCCCceEEEeeec---------------------ccccccCCceEEEEEEEeec-CcEEEecCCc
Confidence            8999999999999999886542110000                     01111 13345777777754 4699999999


Q ss_pred             eEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceE----EEEecCcccCeEEEEEcCCCC
Q 038577          287 VFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESY----ILKQQGHYFDVNCLAYSPDSQ  362 (860)
Q Consensus       287 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~----~~~~~~~~~~v~~~~~s~~~~  362 (860)
                      .|.+||...+..++.+..+...|.+++..++++.+++++.+ +.+.-|...++..    ......|...|.+++..++  
T Consensus       226 ~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd-~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--  302 (691)
T KOG2048|consen  226 TVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVD-PKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--  302 (691)
T ss_pred             eEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCC-CceEEEEecCCccceeeeccccCCcccceeeeeecc--
Confidence            99999999999999999999999999999999999999887 8888887766533    2223568889999999877  


Q ss_pred             EEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcccc--------ceeeEeeCCCC
Q 038577          363 LLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRY--------RNFRTFTTPSS  434 (860)
Q Consensus       363 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~--------~~~~~~~~~~~  434 (860)
                      .+++|+.|..+.+-.....+..........+-.+.....-.++|+.--.+..+.+|.+.+.        ..+..+..+..
T Consensus       303 ~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~  382 (691)
T KOG2048|consen  303 ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEK  382 (691)
T ss_pred             eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCc
Confidence            8999999998887655431111111000001111111112234444444556777776544        23345556677


Q ss_pred             CcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEe-----cCcccCeEEEEEcCCCCEEEEEe-CCCcEEEEEccC
Q 038577          435 RQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDIL-----SGHEGPVHGLVFSPTNATLASSS-WDKTVRLWNVFE  508 (860)
Q Consensus       435 ~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~-----~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~  508 (860)
                      ..+.+.+.+|+|++++.+.-.  .+++|.++....+...     ....-....+.|+-|+..++.++ .+..+.++++.+
T Consensus       383 ~nIs~~aiSPdg~~Ia~st~~--~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~  460 (691)
T KOG2048|consen  383 ENISCAAISPDGNLIAISTVS--RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELET  460 (691)
T ss_pred             cceeeeccCCCCCEEEEeecc--ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecC
Confidence            789999999999999999876  5888888753332222     22234567888998888887777 677888888766


Q ss_pred             Ccce--eEEc--ccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcE
Q 038577          509 GKGS--VESF--PHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCF  584 (860)
Q Consensus       509 ~~~~--~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  584 (860)
                      ....  ....  .....|..++.||+|+++|+.+.+|.|.+|++++.+.......-.                    ..+
T Consensus       461 ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln--------------------~~v  520 (691)
T KOG2048|consen  461 PSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLN--------------------IDV  520 (691)
T ss_pred             cchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccC--------------------cce
Confidence            5421  1111  355679999999999999999999999999999886544432211                    248


Q ss_pred             EEEEEec-CCCEEEEecCCCeEEEEECCCce
Q 038577          585 TTLCYSA-DGSYILAGGSSKYICMYDVADQV  614 (860)
Q Consensus       585 ~~l~~s~-~g~~l~~~~~dg~v~vwd~~~~~  614 (860)
                      ++++|+| +-..|+.+..++.+.-||++..+
T Consensus       521 Ta~~~~~~~~~~lvvats~nQv~efdi~~~~  551 (691)
T KOG2048|consen  521 TAAAFSPFVRNRLVVATSNNQVFEFDIEARN  551 (691)
T ss_pred             eeeeccccccCcEEEEecCCeEEEEecchhh
Confidence            9999995 56689999999999999995544

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.2e-34  Score=253.94  Aligned_cols=290  Identities=18%  Similarity=0.322  Sum_probs=241.1

Q ss_pred             EeeccCCccCeeEEEEcCC-CCEEEEEcCCCcEEEEEccc---CeEEEEee--cCCceeEEEECCCCCEEEEE-eCCeEE
Q 038577           45 VTLPVESSSNICRIAVSPD-GTFLLTVDENQRCHFINLHC---HVVLHRVR--FKYPVNAILFSPNGKYIAVG-TGKLVQ  117 (860)
Q Consensus        45 ~~~~~~h~~~v~~va~spd-g~~la~~~~d~~i~vwd~~~---~~~~~~~~--~~~~v~~~~fspdg~~la~~-~~~~i~  117 (860)
                      ...+.+|.+.+..+||+|- |..||+++.|..|++|+...   -.+...+.  |+..|++++|+|.|++||++ .|.++.
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~   86 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV   86 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence            3456699999999999998 99999999999999999885   33444443  89999999999999999999 899999


Q ss_pred             EEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEE
Q 038577          118 IWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFF  197 (860)
Q Consensus       118 iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~  197 (860)
                      ||.-..++     |+++..+.||...|.|++||++|++||+++.|+.|-||.++...+-   .....+.+|...|..+.|
T Consensus        87 Iw~k~~~e-----fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEf---ec~aVL~~HtqDVK~V~W  158 (312)
T KOG0645|consen   87 IWKKEDGE-----FECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEF---ECIAVLQEHTQDVKHVIW  158 (312)
T ss_pred             EeecCCCc-----eeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcE---EEEeeeccccccccEEEE
Confidence            99877654     5689999999999999999999999999999999999999965333   567899999999999999


Q ss_pred             ccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCC
Q 038577          198 SVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLD  277 (860)
Q Consensus       198 ~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  277 (860)
                      +|...     .|++++.|.+|++|.-..+                       ..|...  ..+.+|...|.+++|+|.|.
T Consensus       159 HPt~d-----lL~S~SYDnTIk~~~~~~d-----------------------ddW~c~--~tl~g~~~TVW~~~F~~~G~  208 (312)
T KOG0645|consen  159 HPTED-----LLFSCSYDNTIKVYRDEDD-----------------------DDWECV--QTLDGHENTVWSLAFDNIGS  208 (312)
T ss_pred             cCCcc-----eeEEeccCCeEEEEeecCC-----------------------CCeeEE--EEecCccceEEEEEecCCCc
Confidence            99888     9999999999999987742                       245443  55677888999999999999


Q ss_pred             EEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce------EEE-EecCccc
Q 038577          278 MVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES------YIL-KQQGHYF  350 (860)
Q Consensus       278 ~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~------~~~-~~~~~~~  350 (860)
                      .|++++.|++++||.....-    -..+...+..++|.  ...|++++.+ +.|+++.-....      .+. ....|..
T Consensus       209 rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~--~~~IaS~ggD-~~i~lf~~s~~~d~p~~~l~~~~~~aHe~  281 (312)
T KOG0645|consen  209 RLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD--NGVIASGGGD-DAIRLFKESDSPDEPSWNLLAKKEGAHEV  281 (312)
T ss_pred             eEEEecCCcceEeeeeccCc----chhcccceEeeeec--ccceEeccCC-CEEEEEEecCCCCCchHHHHHhhhccccc
Confidence            99999999999999864211    12355678888888  4566666665 899999765421      111 2256888


Q ss_pred             CeEEEEEcCC-CCEEEEEeCCCcEEEEECC
Q 038577          351 DVNCLAYSPD-SQLLATGADDNKVKVWTVS  379 (860)
Q Consensus       351 ~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~  379 (860)
                      .|++++|+|. .++|++|+.||.|++|.+.
T Consensus       282 dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  282 DVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            9999999994 6799999999999999864

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.1e-32  Score=270.20  Aligned_cols=454  Identities=13%  Similarity=0.184  Sum_probs=338.4

Q ss_pred             cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeecc-CCCeEEEEEcCCCCeEEEeecCCeEEEEe
Q 038577           92 FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADC-NDKVTALNWSPDSNYLLVGSKDLAVRLFY  169 (860)
Q Consensus        92 ~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~d~~~l~s~~~dg~v~vwd  169 (860)
                      .+.+|.++|||.+.+.||++ .+|.|.||++...-.      +...+.++ ...|.+++|+ ++..|++.+.+|.|.-||
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~------~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwD   96 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF------LEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWD   96 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCce------eeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEe
Confidence            37889999999999999999 899999999987532      45566666 5569999999 466799999999999999


Q ss_pred             ecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCccee
Q 038577          170 VKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRV  249 (860)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (860)
                      +.+.      ..........+.|++++.+|.+.     .++.+++||.+..++...+.                      
T Consensus        97 l~~l------k~~~~~d~~gg~IWsiai~p~~~-----~l~IgcddGvl~~~s~~p~~----------------------  143 (691)
T KOG2048|consen   97 LHTL------KQKYNIDSNGGAIWSIAINPENT-----ILAIGCDDGVLYDFSIGPDK----------------------  143 (691)
T ss_pred             cccC------ceeEEecCCCcceeEEEeCCccc-----eEEeecCCceEEEEecCCce----------------------
Confidence            9998      77888899999999999999998     99999999977777666532                      


Q ss_pred             eeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeec--------CceeEEEEEeeCCCEE
Q 038577          250 KKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSIS--------REKITTAVFNELGNWL  321 (860)
Q Consensus       250 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~--------~~~i~~~~~s~~~~~l  321 (860)
                          +.....+....+.+.++.|+|++..++.|+.||.|++||...+..++.....        ..-|.++.|-.++ .+
T Consensus       144 ----I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI  218 (691)
T KOG2048|consen  144 ----ITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TI  218 (691)
T ss_pred             ----EEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cE
Confidence                2334455566789999999999999999999999999999988877632221        1235666666444 45


Q ss_pred             EEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCee----EEEeecCCCceEEE
Q 038577          322 VFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFC----FVTFTEHTNAVTAL  397 (860)
Q Consensus       322 ~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~i  397 (860)
                      +++.+. |.|.+||...+..+.....|...|.|++..+++.++++++.|+.|..|...++..    ......|...|.++
T Consensus       219 ~sgDS~-G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~  297 (691)
T KOG2048|consen  219 ASGDSA-GTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSM  297 (691)
T ss_pred             EEecCC-ceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceee
Confidence            555554 9999999999999999999999999999999999999999999999998776533    22345688999999


Q ss_pred             EEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEE-EEECCCCCEEEEEecCCCeEEEEECCCCc--------
Q 038577          398 HFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVS-LASDQSGEVICAGTLDSFEIFVWSMKTGR--------  468 (860)
Q Consensus       398 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~i~v~d~~~~~--------  468 (860)
                      +..++  .+++||.|..+.+-.....+..... .+....-.+ +...|..+++ .--... .+.+|.+.+..        
T Consensus       298 av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~-~~~~~p~~~~v~~a~~~~L~-~~w~~h-~v~lwrlGS~~~~g~~~~~  372 (691)
T KOG2048|consen  298 AVIEN--ALISGGRDFTLAICSSREFKNMDHR-QKNLFPASDRVSVAPENRLL-VLWKAH-GVDLWRLGSVILQGEYNYI  372 (691)
T ss_pred             eeecc--eEEecceeeEEEEccccccCchhhh-ccccccccceeecCccceEE-EEeccc-cccceeccCcccccccChh
Confidence            99877  8999999999888665442211111 111111112 2233333333 332232 57777776541        


Q ss_pred             -eEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc-----ccCCCeEEEEEeeCCCEEEEEe-CCC
Q 038577          469 -LLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF-----PHTHDVLTVVYRPDGRQLACST-LDG  541 (860)
Q Consensus       469 -~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~-~dg  541 (860)
                       +.+........|.+.+.||+|++++.+. -..+++|.+.....+....     ...-.+..+.|+-|+..++.++ ...
T Consensus       373 ~Llkl~~k~~~nIs~~aiSPdg~~Ia~st-~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~  451 (691)
T KOG2048|consen  373 HLLKLFTKEKENISCAAISPDGNLIAIST-VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIF  451 (691)
T ss_pred             hheeeecCCccceeeeccCCCCCEEEEee-ccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccc
Confidence             2222233456799999999999999876 3457888886643222211     2344678889999999888887 677


Q ss_pred             eEEEEeCCCCceeE--EEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceE
Q 038577          542 QIHFWDPLNGELMY--TIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVL  615 (860)
Q Consensus       542 ~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~  615 (860)
                      .+.++++.+.....  .+...                  ....+|+.+..||+|+||++.+..|.|.+|++++++.
T Consensus       452 ~le~~el~~ps~kel~~~~~~------------------~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~  509 (691)
T KOG2048|consen  452 SLEEFELETPSFKELKSIQSQ------------------AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLES  509 (691)
T ss_pred             eeEEEEecCcchhhhhccccc------------------cCCCcceeEEEcCCCCEEEEEeccceEEEEEccccee
Confidence            78888877654322  22111                  1123599999999999999999999999999998754

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.8e-35  Score=269.36  Aligned_cols=294  Identities=19%  Similarity=0.348  Sum_probs=270.6

Q ss_pred             ceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccce
Q 038577          129 FAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNR  208 (860)
Q Consensus       129 ~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~  208 (860)
                      .|+++.+.+.+|.++|.|+++.|...++++|+.|++++|||+.++      ....++.||...|..+++++...     +
T Consensus       139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg------~LkltltGhi~~vr~vavS~rHp-----Y  207 (460)
T KOG0285|consen  139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG------QLKLTLTGHIETVRGVAVSKRHP-----Y  207 (460)
T ss_pred             CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC------eEEEeecchhheeeeeeecccCc-----e
Confidence            467788999999999999999999999999999999999999999      78899999999999999999988     9


Q ss_pred             EEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeE
Q 038577          209 IYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVF  288 (860)
Q Consensus       209 l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i  288 (860)
                      +++++.|+.|+.||++.+..                            ...+.+|-+.|.|++.+|.-+.|++|+.|..+
T Consensus       208 lFs~gedk~VKCwDLe~nkv----------------------------IR~YhGHlS~V~~L~lhPTldvl~t~grDst~  259 (460)
T KOG0285|consen  208 LFSAGEDKQVKCWDLEYNKV----------------------------IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTI  259 (460)
T ss_pred             EEEecCCCeeEEEechhhhh----------------------------HHHhccccceeEEEeccccceeEEecCCcceE
Confidence            99999999999999997532                            45667899999999999999999999999999


Q ss_pred             EEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEe
Q 038577          289 GLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGA  368 (860)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  368 (860)
                      ++||+.+...+..+.+|..+|..+.+.|....+++++.+ ++|++||+..++....+..|...|.+++.+|....+|+++
T Consensus       260 RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D-~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas  338 (460)
T KOG0285|consen  260 RVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD-STVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS  338 (460)
T ss_pred             EEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC-ceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC
Confidence            999999999999999999999999999999999988776 9999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeC-------CCCCcEEEEE
Q 038577          369 DDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTT-------PSSRQFVSLA  441 (860)
Q Consensus       369 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-------~~~~~~~~~~  441 (860)
                      .| .|+-|++..|..+..+.+|+.-|.+++...|+ ++++|+..|.+.+||.+++...+....       .....+.+.+
T Consensus       339 ~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~  416 (460)
T KOG0285|consen  339 PD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASC  416 (460)
T ss_pred             Cc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEe
Confidence            87 79999999999999999999999999998887 889999999999999998876665521       2345688999


Q ss_pred             ECCCCCEEEEEecCCCeEEEEECC
Q 038577          442 SDQSGEVICAGTLDSFEIFVWSMK  465 (860)
Q Consensus       442 ~~~~~~~l~~~~~~~~~i~v~d~~  465 (860)
                      |+..|..|+++..|. +|++|.-.
T Consensus       417 fDktg~rlit~eadK-tIk~~keD  439 (460)
T KOG0285|consen  417 FDKTGSRLITGEADK-TIKMYKED  439 (460)
T ss_pred             ecccCceEEeccCCc-ceEEEecc
Confidence            999999999999999 99999754

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.1e-36  Score=283.80  Aligned_cols=283  Identities=20%  Similarity=0.356  Sum_probs=252.2

Q ss_pred             CceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 038577          306 REKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFV  385 (860)
Q Consensus       306 ~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  385 (860)
                      ...|..+.|.|+|+.|++++.. |.+.+|+..+-.....++.|..+|+++.|+++|.++++|+.+|.|++|+..-.....
T Consensus        96 kc~V~~v~WtPeGRRLltgs~S-GEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~  174 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQS-GEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI  174 (464)
T ss_pred             ccceeeEEEcCCCceeEeeccc-ccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence            4579999999999999999887 999999986655555568999999999999999999999999999999976544443


Q ss_pred             EeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECC
Q 038577          386 TFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK  465 (860)
Q Consensus       386 ~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~  465 (860)
                      ....|...|++++|+|+...+++++.||+|++||....+..+.+. .+.-.+.++.|+|....+++++.|+ .|++||.+
T Consensus       175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~-GHgwdVksvdWHP~kgLiasgskDn-lVKlWDpr  252 (464)
T KOG0284|consen  175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR-GHGWDVKSVDWHPTKGLIASGSKDN-LVKLWDPR  252 (464)
T ss_pred             hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec-cCCCCcceeccCCccceeEEccCCc-eeEeecCC
Confidence            334455899999999999999999999999999999888888774 4556899999999999999999999 99999999


Q ss_pred             CCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEee-CCCEEEEEeCCCeEE
Q 038577          466 TGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRP-DGRQLACSTLDGQIH  544 (860)
Q Consensus       466 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~  544 (860)
                      ++.++.++.+|+..|..+.|+|++++|+++|.|..++++|+++.+.+....+|...+++++|+| ...+|.+|+.||.|.
T Consensus       253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvv  332 (464)
T KOG0284|consen  253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVV  332 (464)
T ss_pred             CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceE
Confidence            9999999999999999999999999999999999999999998887888889999999999999 566889999999999


Q ss_pred             EEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEEC
Q 038577          545 FWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV  610 (860)
Q Consensus       545 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~  610 (860)
                      .|.+...+++..+...++                   ..|++++|.|=|..|++|+.|.++++|.-
T Consensus       333 h~~v~~~~p~~~i~~AHd-------------------~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  333 HWVVGLEEPLGEIPPAHD-------------------GEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             EEeccccccccCCCcccc-------------------cceeeeeccccceeEeecCCCcceeeecc
Confidence            999986666555544333                   47999999999999999999999999964

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.5e-36  Score=282.79  Aligned_cols=283  Identities=21%  Similarity=0.330  Sum_probs=255.6

Q ss_pred             CCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEE
Q 038577          263 APSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYI  342 (860)
Q Consensus       263 ~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~  342 (860)
                      ....|..+.|.|+|+.|++|+..|.+.+|+.........++.|...|+++.|+++|.+++++... |.|++|+..-....
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~g-G~iKyWqpnmnnVk  173 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKG-GMIKYWQPNMNNVK  173 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCC-ceEEecccchhhhH
Confidence            34579999999999999999999999999997777777788899999999999999999988765 99999997765544


Q ss_pred             EEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccc
Q 038577          343 LKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFR  422 (860)
Q Consensus       343 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~  422 (860)
                      .....|...|++++|+|+...+++++.||+|+|||....+....+.+|.-.|.++.|+|....++++|.|..|++||.++
T Consensus       174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS  253 (464)
T KOG0284|consen  174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS  253 (464)
T ss_pred             HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence            44445668999999999999999999999999999999988889999999999999999999999999999999999999


Q ss_pred             cceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCC-CCEEEEEeCCCcE
Q 038577          423 YRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPT-NATLASSSWDKTV  501 (860)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i  501 (860)
                      +.++.++..+. ..|..+.|++++++|++++.|. .+++||+++.+.+..+++|...|+++.|+|- ..+|.+|+.||.|
T Consensus       254 g~cl~tlh~HK-ntVl~~~f~~n~N~Llt~skD~-~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsv  331 (464)
T KOG0284|consen  254 GSCLATLHGHK-NTVLAVKFNPNGNWLLTGSKDQ-SCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSV  331 (464)
T ss_pred             cchhhhhhhcc-ceEEEEEEcCCCCeeEEccCCc-eEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCce
Confidence            99998876544 4799999999999999999999 9999999999999999999999999999994 5688999999999


Q ss_pred             EEEEccCCcceeEE-cccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeC
Q 038577          502 RLWNVFEGKGSVES-FPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDP  548 (860)
Q Consensus       502 ~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  548 (860)
                      ..|.+...+++... .+|...|++++|+|=|.+|++|+.|.++++|.-
T Consensus       332 vh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  332 VHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             EEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence            99999855544444 369999999999999999999999999999974

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.8e-35  Score=300.27  Aligned_cols=282  Identities=24%  Similarity=0.394  Sum_probs=247.5

Q ss_pred             eEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038577          298 CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWT  377 (860)
Q Consensus       298 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  377 (860)
                      +..++......++|..|++|+..+|.+..+ ..|++|.+...+... ++. .      .+   ...+=+.+.|-.+.+.|
T Consensus       370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~d-S~i~~~Sl~p~kl~~-lk~-~------~~---l~~~d~~sad~~~~~~D  437 (707)
T KOG0263|consen  370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVD-SSVRVWSLTPKKLKK-LKD-A------SD---LSNIDTESADVDVDMLD  437 (707)
T ss_pred             EEEEEEEcCCcceeEeecCCcchhhccccc-cEEEEEecchhhhcc-ccc-h------hh---hccccccccchhhhhcc
Confidence            344555566789999999999977777665 999999987653221 111 1      11   11222445555677888


Q ss_pred             CCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCC
Q 038577          378 VSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSF  457 (860)
Q Consensus       378 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  457 (860)
                      ..+.....++.+|.++|....|+|+.++|++++.|+++|+|.+.+..+...+. .+..++..+.|+|.|-++|+++.|. 
T Consensus       438 ~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-GH~~PVwdV~F~P~GyYFatas~D~-  515 (707)
T KOG0263|consen  438 DDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-GHLAPVWDVQFAPRGYYFATASHDQ-  515 (707)
T ss_pred             ccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEec-CCCcceeeEEecCCceEEEecCCCc-
Confidence            88888888899999999999999999999999999999999999999998888 6667999999999999999999998 


Q ss_pred             eEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEE
Q 038577          458 EIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACS  537 (860)
Q Consensus       458 ~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  537 (860)
                      +-++|.....++++.+.+|-+.|.|+.|+|+..++++||.|.+||+||+.++..+..+.+|.++|++++|||+|++|++|
T Consensus       516 tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg  595 (707)
T KOG0263|consen  516 TARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASG  595 (707)
T ss_pred             eeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeec
Confidence            99999999999999999999999999999999999999999999999999999888889999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCc
Q 038577          538 TLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQ  613 (860)
Q Consensus       538 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~  613 (860)
                      +.||.|.+||+.+++++..+.+|.+                    .|.++.||.||..||+|+.|.+|++||+..-
T Consensus       596 ~ed~~I~iWDl~~~~~v~~l~~Ht~--------------------ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  596 DEDGLIKIWDLANGSLVKQLKGHTG--------------------TIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             ccCCcEEEEEcCCCcchhhhhcccC--------------------ceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            9999999999999999999999976                    4999999999999999999999999998754

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=4.5e-34  Score=255.87  Aligned_cols=288  Identities=24%  Similarity=0.380  Sum_probs=255.2

Q ss_pred             eEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEc-cCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038577          298 CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEW-RSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVW  376 (860)
Q Consensus       298 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  376 (860)
                      ++..+.+|.+.|..+.|+|+|..+++++.+ ..|.+|+. ...+....+.+|.+.|..+.|.+|++.+++++.|.+++.|
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~D-r~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSD-RAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW  117 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCc-ceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence            345567889999999999999999999887 99999995 4456667778999999999999999999999999999999


Q ss_pred             ECCCCeeEEEeecCCCceEEEEEeeCCC-EEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecC
Q 038577          377 TVSSGFCFVTFTEHTNAVTALHFMANNH-SLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLD  455 (860)
Q Consensus       377 d~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  455 (860)
                      |+++|++.+.+++|..-|..+..+.-|. .+.+++.|+++++||+++...++++...  .+++++.|...+..+.+|+-|
T Consensus       118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k--yqltAv~f~d~s~qv~sggId  195 (338)
T KOG0265|consen  118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK--YQLTAVGFKDTSDQVISGGID  195 (338)
T ss_pred             ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccc--eeEEEEEecccccceeecccc
Confidence            9999999999999999999998666564 5568889999999999988888777544  478999999999999999999


Q ss_pred             CCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCc---c-eeEEcc--c--CCCeEEEEE
Q 038577          456 SFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGK---G-SVESFP--H--THDVLTVVY  527 (860)
Q Consensus       456 ~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---~-~~~~~~--~--~~~v~~~~~  527 (860)
                      + .|++||++.+.....+.||..+|+.+..+|+|.++.+-+.|.++++||++...   . +..+.+  |  ......++|
T Consensus       196 n-~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csw  274 (338)
T KOG0265|consen  196 N-DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSW  274 (338)
T ss_pred             C-ceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeec
Confidence            9 99999999999999999999999999999999999999999999999986532   2 333333  2  234567899


Q ss_pred             eeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEE
Q 038577          528 RPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICM  607 (860)
Q Consensus       528 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~v  607 (860)
                      +|+++.+.+|+.|..+++||......+..+++|..                    .|.++.|.|...+|.+++.|.+|++
T Consensus       275 sp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g--------------------svn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  275 SPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG--------------------SVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             cCCCCccccccccceEEEeecccccEEEEcCCcce--------------------eEEEeeecCCCcEEEEeccCceeEe
Confidence            99999999999999999999999999999999987                    4999999999999999999999987


Q ss_pred             EE
Q 038577          608 YD  609 (860)
Q Consensus       608 wd  609 (860)
                      =+
T Consensus       335 ge  336 (338)
T KOG0265|consen  335 GE  336 (338)
T ss_pred             ec
Confidence            44

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.1e-33  Score=253.46  Aligned_cols=291  Identities=23%  Similarity=0.324  Sum_probs=260.9

Q ss_pred             cceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccc
Q 038577          181 KPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDF  260 (860)
Q Consensus       181 ~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (860)
                      ....+.+|.+.|..+.|+|+|.     .+++++.|..|.+|+......                           ....+
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs-----~~aSgG~Dr~I~LWnv~gdce---------------------------N~~~l   86 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGS-----CFASGGSDRAIVLWNVYGDCE---------------------------NFWVL   86 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCC-----eEeecCCcceEEEEecccccc---------------------------ceeee
Confidence            4567889999999999999999     999999999999999776432                           12334


Q ss_pred             cCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce
Q 038577          261 SQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES  340 (860)
Q Consensus       261 ~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~  340 (860)
                      .+|.+.|..+.|.+|++.+++++.|.+++.||..+++.++.++.|..-+..+..+.-|..++.++++|+++++||+++..
T Consensus        87 kgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~  166 (338)
T KOG0265|consen   87 KGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE  166 (338)
T ss_pred             ccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc
Confidence            58999999999999999999999999999999999999999999999999999888999999999999999999999888


Q ss_pred             EEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 038577          341 YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDL  420 (860)
Q Consensus       341 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~  420 (860)
                      .+..+.. ...++++.|..++..+.+|+-|+.|++||++.+.....+.+|.++|+.+..+++|.++.+-+.|.++++||+
T Consensus       167 ~~~t~~~-kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~  245 (338)
T KOG0265|consen  167 AIKTFEN-KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDV  245 (338)
T ss_pred             hhhcccc-ceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEe
Confidence            8776643 456999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc----ceeeEeeCCC---CCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEE
Q 038577          421 FRY----RNFRTFTTPS---SRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLA  493 (860)
Q Consensus       421 ~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~  493 (860)
                      +-.    +++..+....   ......++++|+++.+.+|+.|. .+++||..+...+..++||.+.|.+++|+|...+|.
T Consensus       246 rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr-~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iil  324 (338)
T KOG0265|consen  246 RPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADR-FVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIIL  324 (338)
T ss_pred             cccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccc-eEEEeecccccEEEEcCCcceeEEEeeecCCCcEEE
Confidence            753    3344444322   23456789999999999999999 999999999999999999999999999999999999


Q ss_pred             EEeCCCcEEEEE
Q 038577          494 SSSWDKTVRLWN  505 (860)
Q Consensus       494 s~~~dg~i~iwd  505 (860)
                      +++.|++|++=.
T Consensus       325 s~~sdk~i~lge  336 (338)
T KOG0265|consen  325 SCSSDKTIYLGE  336 (338)
T ss_pred             EeccCceeEeec
Confidence            999999998743

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.3e-32  Score=242.82  Aligned_cols=290  Identities=26%  Similarity=0.391  Sum_probs=231.7

Q ss_pred             EEEEeeccCCCeEEEEEcCC-CCeEEEeecCCeEEEEeecccccCcccccceEe-ecCCCcEEEEEEccCCCCCccceEE
Q 038577          133 LIRTLADCNDKVTALNWSPD-SNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLL-LGHRDSVVGCFFSVDKKTDKVNRIY  210 (860)
Q Consensus       133 ~~~~~~~h~~~v~~l~~s~d-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~-~~h~~~i~~~~~~~~~~~~~~~~l~  210 (860)
                      .++.+.+|.+++..++|+|- |..||+++.|+.|++|+...+...   .....+ .+|+..|.+++|+|.|+     +|+
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~---~ck~vld~~hkrsVRsvAwsp~g~-----~La   77 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSW---TCKTVLDDGHKRSVRSVAWSPHGR-----YLA   77 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcE---EEEEeccccchheeeeeeecCCCc-----EEE
Confidence            57889999999999999998 889999999999999999853111   222222 46888888888888888     888


Q ss_pred             EEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEE
Q 038577          211 TIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGL  290 (860)
Q Consensus       211 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~  290 (860)
                      +++.|.++.+|.-..+                                                                
T Consensus        78 ~aSFD~t~~Iw~k~~~----------------------------------------------------------------   93 (312)
T KOG0645|consen   78 SASFDATVVIWKKEDG----------------------------------------------------------------   93 (312)
T ss_pred             EeeccceEEEeecCCC----------------------------------------------------------------
Confidence            8888888888854432                                                                


Q ss_pred             EECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc---eEEEEecCcccCeEEEEEcCCCCEEEEE
Q 038577          291 YQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE---SYILKQQGHYFDVNCLAYSPDSQLLATG  367 (860)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~  367 (860)
                          +.+++..+.+|...|.+++|+++|++|++++.+ ..+-||....+   .+...++.|...|..+.|+|...+|+++
T Consensus        94 ----efecv~~lEGHEnEVK~Vaws~sG~~LATCSRD-KSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~  168 (312)
T KOG0645|consen   94 ----EFECVATLEGHENEVKCVAWSASGNYLATCSRD-KSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSC  168 (312)
T ss_pred             ----ceeEEeeeeccccceeEEEEcCCCCEEEEeeCC-CeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEe
Confidence                334556666777777777777777777776655 77777777633   4566778999999999999999999999


Q ss_pred             eCCCcEEEEECC---CCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECC
Q 038577          368 ADDNKVKVWTVS---SGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQ  444 (860)
Q Consensus       368 ~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  444 (860)
                      +.|++|++|+-.   ...+.+++.+|...|.+++|++.|..|++++.|+++++|...     ..+...+...+..+++. 
T Consensus       169 SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~-----~~~~~~~sr~~Y~v~W~-  242 (312)
T KOG0645|consen  169 SYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY-----TDLSGMHSRALYDVPWD-  242 (312)
T ss_pred             ccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec-----cCcchhcccceEeeeec-
Confidence            999999999866   347899999999999999999999999999999999999865     23444455677788887 


Q ss_pred             CCCEEEEEecCCCeEEEEECCCCc------eE-EEecCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEEcc
Q 038577          445 SGEVICAGTLDSFEIFVWSMKTGR------LL-DILSGHEGPVHGLVFSPT-NATLASSSWDKTVRLWNVF  507 (860)
Q Consensus       445 ~~~~l~~~~~~~~~i~v~d~~~~~------~~-~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~  507 (860)
                       ...|++++.|+ .|++|.-...-      ++ ..-..|...|++++|.|. ..+|++++.||.|++|.+.
T Consensus       243 -~~~IaS~ggD~-~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  243 -NGVIASGGGDD-AIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             -ccceEeccCCC-EEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence             66788888888 99999766431      11 233568899999999995 6789999999999999874

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=8.5e-34  Score=259.70  Aligned_cols=287  Identities=19%  Similarity=0.333  Sum_probs=264.5

Q ss_pred             ccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc
Q 038577          258 DDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR  337 (860)
Q Consensus       258 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~  337 (860)
                      ..+.+|.+.|.|+++.|..+++++|+.|+++.|||+.+++...++.+|...+..+++|+-..++++++.+ +.|+.||++
T Consensus       145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ged-k~VKCwDLe  223 (460)
T KOG0285|consen  145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGED-KQVKCWDLE  223 (460)
T ss_pred             hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCC-CeeEEEech
Confidence            5577899999999999999999999999999999999999999999999999999999999999988766 999999999


Q ss_pred             CceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 038577          338 SESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRA  417 (860)
Q Consensus       338 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~  417 (860)
                      ..+.++.+.+|-..|.|++.+|.-..|++|+.|.++++||+++...+..+.+|..+|..+.+.|-...+++|+.|++|++
T Consensus       224 ~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrl  303 (460)
T KOG0285|consen  224 YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRL  303 (460)
T ss_pred             hhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999998889999999999999


Q ss_pred             EEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeC
Q 038577          418 WDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSW  497 (860)
Q Consensus       418 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  497 (860)
                      ||+..++....+..+ ...+.+++.+|....+|+++.|  .|+-|++..|..++.+.+|...|.+++...|+ ++++|++
T Consensus       304 WDl~agkt~~tlt~h-kksvral~lhP~e~~fASas~d--nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~d  379 (460)
T KOG0285|consen  304 WDLRAGKTMITLTHH-KKSVRALCLHPKENLFASASPD--NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGD  379 (460)
T ss_pred             eeeccCceeEeeecc-cceeeEEecCCchhhhhccCCc--cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCC
Confidence            999999988877654 4578999999999999999998  59999999999999999999999999998776 7889999


Q ss_pred             CCcEEEEEccCCcceeEEc--------ccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCC
Q 038577          498 DKTVRLWNVFEGKGSVESF--------PHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPL  549 (860)
Q Consensus       498 dg~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  549 (860)
                      .|.+.+||.+++.......        .....|.+.+|...|..|++|..|.+|++|.-.
T Consensus       380 ng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD  439 (460)
T KOG0285|consen  380 NGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED  439 (460)
T ss_pred             ceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence            9999999999886433321        245678999999999999999999999999754

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-33  Score=263.66  Aligned_cols=301  Identities=20%  Similarity=0.319  Sum_probs=246.6

Q ss_pred             eeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceE
Q 038577          130 AFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRI  209 (860)
Q Consensus       130 ~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l  209 (860)
                      |.+..+.+..|.+.|+-+.||++|+|||+++.|.+..+|++.....   .....++.+|..+|..+.|+||.+     ++
T Consensus       213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~---~kl~~tlvgh~~~V~yi~wSPDdr-----yL  284 (519)
T KOG0293|consen  213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH---FKLKKTLVGHSQPVSYIMWSPDDR-----YL  284 (519)
T ss_pred             CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc---eeeeeeeecccCceEEEEECCCCC-----eE
Confidence            3344677889999999999999999999999999999999987622   255789999999999999999999     99


Q ss_pred             EEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEE
Q 038577          210 YTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFG  289 (860)
Q Consensus       210 ~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~  289 (860)
                      ++|+.|..+.+||..++..                           ....-.++...+.+++|.|||..+++|+.|+.+.
T Consensus       285 laCg~~e~~~lwDv~tgd~---------------------------~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~  337 (519)
T KOG0293|consen  285 LACGFDEVLSLWDVDTGDL---------------------------RHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTII  337 (519)
T ss_pred             EecCchHheeeccCCcchh---------------------------hhhcccCcCCCcceeEEccCCceeEecCCCCcEE
Confidence            9999999999999999764                           1111122456899999999999999999999999


Q ss_pred             EEECCCceeEEEEeecC-ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEe
Q 038577          290 LYQMPDFVCIHLLSISR-EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGA  368 (860)
Q Consensus       290 ~~~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  368 (860)
                      .|++ ++......++-. ..|.+++.++||+++++.+.+ ..+++++.++........ ...+|+++++|.+++++++--
T Consensus       338 ~wdl-Dgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d-~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL  414 (519)
T KOG0293|consen  338 MWDL-DGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVD-KKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNL  414 (519)
T ss_pred             EecC-CcchhhcccccccceeEEEEEcCCCcEEEEEecc-cceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEc
Confidence            9999 455555554433 469999999999999999876 999999988766554333 345799999999999999999


Q ss_pred             CCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCE
Q 038577          369 DDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEV  448 (860)
Q Consensus       369 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (860)
                      .+..+++||++....++.+.+|...          ++++-.+-.|                              .+..+
T Consensus       415 ~~qei~LWDl~e~~lv~kY~Ghkq~----------~fiIrSCFgg------------------------------~~~~f  454 (519)
T KOG0293|consen  415 QDQEIHLWDLEENKLVRKYFGHKQG----------HFIIRSCFGG------------------------------GNDKF  454 (519)
T ss_pred             ccCeeEEeecchhhHHHHhhccccc----------ceEEEeccCC------------------------------CCcce
Confidence            9999999999988888888888643          2332111111                              12356


Q ss_pred             EEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEEccCC
Q 038577          449 ICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTN-ATLASSSWDKTVRLWNVFEG  509 (860)
Q Consensus       449 l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~  509 (860)
                      +++|+.|+ .|+||+..+|+++..+.||...|++++|+|.. ..+|+++.||+|+||.....
T Consensus       455 iaSGSED~-kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  455 IASGSEDS-KVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             EEecCCCc-eEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            77777777 88888889999999999999999999999965 56999999999999987543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-33  Score=263.08  Aligned_cols=286  Identities=25%  Similarity=0.367  Sum_probs=243.5

Q ss_pred             cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEee
Q 038577           92 FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYV  170 (860)
Q Consensus        92 ~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~  170 (860)
                      |...|..+.||++|+|||++ .|.+..+|.+.....    +++..++.+|..+|..+.||||.++|++++.|..+.+||+
T Consensus       223 htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~----~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv  298 (519)
T KOG0293|consen  223 HTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH----FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDV  298 (519)
T ss_pred             CCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc----eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccC
Confidence            88999999999999999999 788999999876542    5678999999999999999999999999999999999999


Q ss_pred             cccccCcccccceEe-ecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCccee
Q 038577          171 KEKLKGIHTNKPFLL-LGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRV  249 (860)
Q Consensus       171 ~~~~~~~~~~~~~~~-~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (860)
                      .++      ...... .+|...+.+++|.|||.     .+++|+.|+++..||++++..                     
T Consensus       299 ~tg------d~~~~y~~~~~~S~~sc~W~pDg~-----~~V~Gs~dr~i~~wdlDgn~~---------------------  346 (519)
T KOG0293|consen  299 DTG------DLRHLYPSGLGFSVSSCAWCPDGF-----RFVTGSPDRTIIMWDLDGNIL---------------------  346 (519)
T ss_pred             Ccc------hhhhhcccCcCCCcceeEEccCCc-----eeEecCCCCcEEEecCCcchh---------------------
Confidence            998      223222 23568899999999999     999999999999999998543                     


Q ss_pred             eeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCC
Q 038577          250 KKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLG  329 (860)
Q Consensus       250 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g  329 (860)
                      ..|.-..       ...|.+++.++||+++++.+.|..|++|+..+......+ ....+|++...|.|++++++.-.+ .
T Consensus       347 ~~W~gvr-------~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li-se~~~its~~iS~d~k~~LvnL~~-q  417 (519)
T KOG0293|consen  347 GNWEGVR-------DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI-SEEQPITSFSISKDGKLALVNLQD-Q  417 (519)
T ss_pred             hcccccc-------cceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccc-cccCceeEEEEcCCCcEEEEEccc-C
Confidence            4554332       246999999999999999999999999998766555433 345689999999999998887766 9


Q ss_pred             cEEEEEccCceEEEEecCcccC--eEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCC-CE
Q 038577          330 QLLVWEWRSESYILKQQGHYFD--VNCLAYSP-DSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANN-HS  405 (860)
Q Consensus       330 ~i~v~d~~~~~~~~~~~~~~~~--v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~  405 (860)
                      .+.+||++....+.++.+|...  +..-+|-- +..++++|+.|+.|+||+..+++++.++.+|...|.+++|+|.. ..
T Consensus       418 ei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m  497 (519)
T KOG0293|consen  418 EIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEM  497 (519)
T ss_pred             eeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHH
Confidence            9999999998888888888654  22333433 45799999999999999999999999999999999999999965 67


Q ss_pred             EEEEeCCCcEEEEEccc
Q 038577          406 LLSASLDGTVRAWDLFR  422 (860)
Q Consensus       406 l~s~~~dg~i~~wd~~~  422 (860)
                      ++++|.||+|++|....
T Consensus       498 ~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  498 FASASDDGTIRIWGPSD  514 (519)
T ss_pred             hhccCCCCeEEEecCCc
Confidence            89999999999998754

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=4e-32  Score=277.84  Aligned_cols=287  Identities=30%  Similarity=0.534  Sum_probs=259.4

Q ss_pred             EEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 038577          300 HLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVS  379 (860)
Q Consensus       300 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  379 (860)
                      ..+..|..+|.+++|+|+++.+++++.+ |.+.+|++.++........|...+..+.|+|+++.+++++.+|.|++|++.
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~-g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~   81 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGD-GTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE   81 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecC-cEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence            3456788899999999999999988765 999999999988888888899999999999999999999999999999999


Q ss_pred             CCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeE
Q 038577          380 SGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEI  459 (860)
Q Consensus       380 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i  459 (860)
                      +++....+..|...+.++.|++++..+++++.|+.+.+||+.+.+....+. .+...+.++.++|++.+++++..++ .+
T Consensus        82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~-~i  159 (289)
T cd00200          82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGTFVASSSQDG-TI  159 (289)
T ss_pred             cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-cCCCcEEEEEEcCcCCEEEEEcCCC-cE
Confidence            988888898999999999999998888888889999999999887777766 3455799999999999998888677 99


Q ss_pred             EEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeC
Q 038577          460 FVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTL  539 (860)
Q Consensus       460 ~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  539 (860)
                      ++||+++++....+..|...+.++.|+|+++.+++++.|+.|++||+..++.......|...+.++.|+|++.++++++.
T Consensus       160 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  239 (289)
T cd00200         160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSE  239 (289)
T ss_pred             EEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcC
Confidence            99999999999999999999999999999999999999999999999988766666588889999999999889988888


Q ss_pred             CCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEE
Q 038577          540 DGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYD  609 (860)
Q Consensus       540 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd  609 (860)
                      ||.|++||+.+++....+..|..                    .|.+++|+|++++|++++.||.+++|+
T Consensus       240 ~~~i~i~~~~~~~~~~~~~~~~~--------------------~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         240 DGTIRVWDLRTGECVQTLSGHTN--------------------SVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCcEEEEEcCCceeEEEccccCC--------------------cEEEEEECCCCCEEEEecCCCeEEecC
Confidence            99999999999998888886654                    599999999999999999999999996

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.6e-31  Score=273.36  Aligned_cols=285  Identities=28%  Similarity=0.512  Sum_probs=260.2

Q ss_pred             ccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc
Q 038577          260 FSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE  339 (860)
Q Consensus       260 ~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~  339 (860)
                      +.+|...|.+++|+|+++++++++.+|.+.+|++.+++....+..+...+..+.|+++++.+++++.+ |.+.+|++.++
T Consensus         5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~~i~i~~~~~~   83 (289)
T cd00200           5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSD-KTIRLWDLETG   83 (289)
T ss_pred             hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCC-CeEEEEEcCcc
Confidence            44678899999999999999999999999999999888888888888899999999999888888765 99999999998


Q ss_pred             eEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 038577          340 SYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWD  419 (860)
Q Consensus       340 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd  419 (860)
                      +....+..|...+.++.|++++.++++++.+|.+++||+.+++....+..|...+.++.|+|++.++++++.|+.+++||
T Consensus        84 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d  163 (289)
T cd00200          84 ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWD  163 (289)
T ss_pred             cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEE
Confidence            88888888988999999999998898888899999999999999999988999999999999988888888899999999


Q ss_pred             ccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCC
Q 038577          420 LFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDK  499 (860)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg  499 (860)
                      +.+++....+.. +...+.++.++|+++.+++++.++ .+++||+++++.+..+..|...+.+++|+|++.++++++.||
T Consensus       164 ~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  241 (289)
T cd00200         164 LRTGKCVATLTG-HTGEVNSVAFSPDGEKLLSSSSDG-TIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDG  241 (289)
T ss_pred             ccccccceeEec-CccccceEEECCCcCEEEEecCCC-cEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence            998887777763 344789999999999999998877 999999999999999988999999999999998999888899


Q ss_pred             cEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEe
Q 038577          500 TVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWD  547 (860)
Q Consensus       500 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  547 (860)
                      .|++||+.+++....+..|...+.+++|+|++++|++++.||.+++|+
T Consensus       242 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         242 TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             cEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            999999998877777778889999999999999999999999999996

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=5.4e-34  Score=272.18  Aligned_cols=288  Identities=22%  Similarity=0.380  Sum_probs=261.8

Q ss_pred             eccccCCCCceEEEEecC-CCCEEEEEEcCCeEEEEECCC-ceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEE
Q 038577          257 KDDFSQAPSKVTACDYHR-GLDMVVVGFSNGVFGLYQMPD-FVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVW  334 (860)
Q Consensus       257 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~g~i~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~  334 (860)
                      ...+.+|...|+++.|.| .+.+|++++.|+.|+||++-. +.+++++.+|..+|..++|+++|..+++++.+ +.+++|
T Consensus       207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD-~~lKlw  285 (503)
T KOG0282|consen  207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFD-RFLKLW  285 (503)
T ss_pred             eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecc-eeeeee
Confidence            456789999999999999 888999999999999999876 89999999999999999999999999999887 999999


Q ss_pred             EccCceEEEEecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCC
Q 038577          335 EWRSESYILKQQGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDG  413 (860)
Q Consensus       335 d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg  413 (860)
                      |+++|+++..+.. ...++|+.|.|++ +.+++|+.|+.|+.||+++++.++++..|-+.|..+.|-++|+++++.+.|+
T Consensus       286 DtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdk  364 (503)
T KOG0282|consen  286 DTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDK  364 (503)
T ss_pred             ccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCc
Confidence            9999999988753 3458999999998 8899999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCC---ceEEEecCcc--cCeEEEEEcCC
Q 038577          414 TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTG---RLLDILSGHE--GPVHGLVFSPT  488 (860)
Q Consensus       414 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~---~~~~~~~~h~--~~v~~l~~s~~  488 (860)
                      ++++|+......++....+......++..+|++.++++-+.++ .|.+|.+...   .....+.||.  +--..+.||||
T Consensus       365 s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN-~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD  443 (503)
T KOG0282|consen  365 SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDN-YIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD  443 (503)
T ss_pred             cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCc-eEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence            9999999998888888777777889999999999999999998 9999987643   2235567775  45677899999


Q ss_pred             CCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeC-CCEEEEEeCCCeEEEEe
Q 038577          489 NATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPD-GRQLACSTLDGQIHFWD  547 (860)
Q Consensus       489 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd  547 (860)
                      |.+|++|+.||.+.+||..+.+....+..|..++..+.|+|. ...+|+++.||.|++||
T Consensus       444 G~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  444 GRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             CCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            999999999999999999999988888899999999999994 55899999999999996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.7e-32  Score=287.89  Aligned_cols=287  Identities=24%  Similarity=0.447  Sum_probs=261.2

Q ss_pred             cCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCce--eEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEc-c
Q 038577          261 SQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFV--CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEW-R  337 (860)
Q Consensus       261 ~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~-~  337 (860)
                      ..+...+.++.|+++|+.++.++.++.+++|+....+  ..+.+..|...|..++|+|++++++.++.+ +++++||+ .
T Consensus       156 ~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D-~tiriwd~~~  234 (456)
T KOG0266|consen  156 GHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDD-KTLRIWDLKD  234 (456)
T ss_pred             ccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCC-ceEEEeeccC
Confidence            3346789999999999999999999999999997777  777778899999999999999988877665 99999999 5


Q ss_pred             CceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 038577          338 SESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRA  417 (860)
Q Consensus       338 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~  417 (860)
                      .+..+..+.+|...|++++|+|+|+.+++|+.|++|++||++++++...+.+|.+.|++++|+++++++++++.|+.|++
T Consensus       235 ~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~v  314 (456)
T KOG0266|consen  235 DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRV  314 (456)
T ss_pred             CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEE
Confidence            56888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccccc--eeeEeeCCCCC-cEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCe---EEEEEcCCCCE
Q 038577          418 WDLFRYR--NFRTFTTPSSR-QFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPV---HGLVFSPTNAT  491 (860)
Q Consensus       418 wd~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v---~~l~~s~~~~~  491 (860)
                      ||+.++.  +...+...... .+.++.|+|++.+++++..|+ .+++||+..++....+.+|...+   .+...++.+++
T Consensus       315 wd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~-~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (456)
T KOG0266|consen  315 WDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDR-TLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKL  393 (456)
T ss_pred             EECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCC-eEEEEEccCCcceeeecccCCcceeEecccccCCCCe
Confidence            9999998  55666665555 789999999999999999999 99999999999999999998753   34456778999


Q ss_pred             EEEEeCCCcEEEEEccCCcceeEEccc-CCCeEEEEEeeCCCEEEEEe--CCCeEEEEeCC
Q 038577          492 LASSSWDKTVRLWNVFEGKGSVESFPH-THDVLTVVYRPDGRQLACST--LDGQIHFWDPL  549 (860)
Q Consensus       492 l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~  549 (860)
                      +++++.|+.|++||+.++..+....+| ...+..+.++|..+++++++  .|+.+++|..+
T Consensus       394 i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  394 IYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             EEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            999999999999999998877888889 88999999999999999998  78899999753

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=6.8e-32  Score=285.84  Aligned_cols=283  Identities=27%  Similarity=0.490  Sum_probs=256.4

Q ss_pred             CceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce--EEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCe
Q 038577          306 REKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES--YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTV-SSGF  382 (860)
Q Consensus       306 ~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~-~~~~  382 (860)
                      ...+.++.|+++|+.++.++.+ +.+++|+....+  ....+.+|...|.+++|+|+++++++++.|++|++||+ ..+.
T Consensus       159 ~~sv~~~~fs~~g~~l~~~~~~-~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~  237 (456)
T KOG0266|consen  159 CPSVTCVDFSPDGRALAAASSD-GLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR  237 (456)
T ss_pred             cCceEEEEEcCCCCeEEEccCC-CcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe
Confidence            5688999999999997777666 999999997777  66666889999999999999999999999999999999 5668


Q ss_pred             eEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEE
Q 038577          383 CFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVW  462 (860)
Q Consensus       383 ~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~  462 (860)
                      .++++.+|...|++++|+|+++.+++|+.|++|++||++++++.+.+..+.. .+.+++|++++.++++++.|+ .|++|
T Consensus       238 ~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~-~is~~~f~~d~~~l~s~s~d~-~i~vw  315 (456)
T KOG0266|consen  238 NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD-GISGLAFSPDGNLLVSASYDG-TIRVW  315 (456)
T ss_pred             EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC-ceEEEEECCCCCEEEEcCCCc-cEEEE
Confidence            9999999999999999999999999999999999999999999999887765 899999999999999998888 99999


Q ss_pred             ECCCCc--eEEEecCcccC--eEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCC---eEEEEEeeCCCEEE
Q 038577          463 SMKTGR--LLDILSGHEGP--VHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHD---VLTVVYRPDGRQLA  535 (860)
Q Consensus       463 d~~~~~--~~~~~~~h~~~--v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~  535 (860)
                      |+.++.  +...+.++..+  ++++.|+|++.++++++.|+.+++||+..+.......+|...   +.+...++.+.+++
T Consensus       316 d~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  395 (456)
T KOG0266|consen  316 DLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIY  395 (456)
T ss_pred             ECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEE
Confidence            999999  56777777665  999999999999999999999999999999888888887774   44556678999999


Q ss_pred             EEeCCCeEEEEeCCCCceeEEEecc-cccCCCccccccccccccCCCCcEEEEEEecCCCEEEEec--CCCeEEEEECC
Q 038577          536 CSTLDGQIHFWDPLNGELMYTIEGR-RDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGG--SSKYICMYDVA  611 (860)
Q Consensus       536 ~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~--~dg~v~vwd~~  611 (860)
                      +|+.|+.|++||+.++..+..+.+| ..                    .+..+.++|...++++++  .|+.+++|..+
T Consensus       396 sg~~d~~v~~~~~~s~~~~~~l~~h~~~--------------------~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  396 SGSEDGSVYVWDSSSGGILQRLEGHSKA--------------------AVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             EEeCCceEEEEeCCccchhhhhcCCCCC--------------------ceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            9999999999999999999999998 43                    489999999999999998  78999999754

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.9e-32  Score=232.88  Aligned_cols=285  Identities=21%  Similarity=0.368  Sum_probs=251.7

Q ss_pred             EEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccc
Q 038577          343 LKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFR  422 (860)
Q Consensus       343 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~  422 (860)
                      ..+..+.++|..+.|+-+|++.++++.|.+|++|+...+.++.++.+|...|..++.+.|+..++++|.|..+.+||+.+
T Consensus        11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T   90 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT   90 (307)
T ss_pred             eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCC--CceEEEecCcccCeEEEEEcCCCCEEEEEeCCCc
Q 038577          423 YRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT--GRLLDILSGHEGPVHGLVFSPTNATLASSSWDKT  500 (860)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~--~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~  500 (860)
                      ++..+.+..+. .++..+.|+.+...+++|+.|. .+++||.++  .++++.+......|.++..+  +..+++|+.||+
T Consensus        91 Gkv~Rr~rgH~-aqVNtV~fNeesSVv~SgsfD~-s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGt  166 (307)
T KOG0316|consen   91 GKVDRRFRGHL-AQVNTVRFNEESSVVASGSFDS-SVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGT  166 (307)
T ss_pred             Ceeeeeccccc-ceeeEEEecCcceEEEeccccc-eeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCc
Confidence            99999988654 5899999999999999999999 999999986  46788888888999999884  678999999999


Q ss_pred             EEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCC
Q 038577          501 VRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSS  580 (860)
Q Consensus       501 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  580 (860)
                      ++.||++.+......  ...+|+++.|++|++..++++.|+++++.|-.+|+++...++|...                 
T Consensus       167 vRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~-----------------  227 (307)
T KOG0316|consen  167 VRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNM-----------------  227 (307)
T ss_pred             EEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccc-----------------
Confidence            999999998744444  4568999999999999999999999999999999999999999863                 


Q ss_pred             CCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeecccccccceeeeccCCCCCCCCCCccccCCCCCcccccc
Q 038577          581 GKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVE  660 (860)
Q Consensus       581 ~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  660 (860)
                       ..=...+++.....+++|++||.|++||+..+.++.++....                                     
T Consensus       228 -eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~-------------------------------------  269 (307)
T KOG0316|consen  228 -EYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVS-------------------------------------  269 (307)
T ss_pred             -eeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCC-------------------------------------
Confidence             234677888889999999999999999999988876554211                                     


Q ss_pred             ccccCccccCCCCCCCCCCCCccceeEEEECCCCCeEEEeccccEEEEe
Q 038577          661 KQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYS  709 (860)
Q Consensus       661 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~i~~  709 (860)
                                           ..-+..+.+.|.-..|++++..+...|.
T Consensus       270 ---------------------~v~v~dl~~hp~~~~f~~A~~~~~~~~~  297 (307)
T KOG0316|consen  270 ---------------------TVIVTDLSCHPTMDDFITATGHGDLFWY  297 (307)
T ss_pred             ---------------------ceeEEeeecccCccceeEecCCceecee
Confidence                                 0136788888888889999999987664

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.1e-30  Score=297.32  Aligned_cols=313  Identities=16%  Similarity=0.253  Sum_probs=254.1

Q ss_pred             CCeEEEEECCCceeEEEEe-----ecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce--------EEEEecCcccC
Q 038577          285 NGVFGLYQMPDFVCIHLLS-----ISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES--------YILKQQGHYFD  351 (860)
Q Consensus       285 ~g~i~~~~~~~~~~~~~~~-----~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~--------~~~~~~~~~~~  351 (860)
                      +|.+++|+.........+.     .|...|.+++|+|+|+++++++.+ +.|++|+.....        ....+. +...
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D-~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~  534 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVN-KKIKIFECESIIKDGRDIHYPVVELA-SRSK  534 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCC-CEEEEEECCcccccccccccceEEec-ccCc
Confidence            5677888887665544333     367889999999999999988766 999999975421        122222 3467


Q ss_pred             eEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEee-CCCEEEEEeCCCcEEEEEccccceeeEe
Q 038577          352 VNCLAYSPD-SQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMA-NNHSLLSASLDGTVRAWDLFRYRNFRTF  429 (860)
Q Consensus       352 v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~  429 (860)
                      +.+++|++. +.+|++++.||.|++||+.+++.+..+.+|...|++++|+| ++.+|++++.||.|++||+.++.....+
T Consensus       535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~  614 (793)
T PLN00181        535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI  614 (793)
T ss_pred             eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence            899999874 78999999999999999999999999999999999999997 7889999999999999999998888777


Q ss_pred             eCCCCCcEEEEEE-CCCCCEEEEEecCCCeEEEEECCCCc-eEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 038577          430 TTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGR-LLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVF  507 (860)
Q Consensus       430 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~i~v~d~~~~~-~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~  507 (860)
                      ...  ..+.++.+ +++|.++++|+.|+ .|++||+++++ .+..+.+|...|.++.|. ++.++++++.|++|++||+.
T Consensus       615 ~~~--~~v~~v~~~~~~g~~latgs~dg-~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~  690 (793)
T PLN00181        615 KTK--ANICCVQFPSESGRSLAFGSADH-KVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS  690 (793)
T ss_pred             ecC--CCeEEEEEeCCCCCEEEEEeCCC-eEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence            643  46788888 56799999999998 99999998765 567788999999999997 78899999999999999997


Q ss_pred             CC------cceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCC
Q 038577          508 EG------KGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSG  581 (860)
Q Consensus       508 ~~------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  581 (860)
                      ..      ..+..+.+|...+..++|+|++.+|++|+.||.|++|+.....++..+.........       ......+.
T Consensus       691 ~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~-------~~~~~~~~  763 (793)
T PLN00181        691 MSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVS-------GLEVDDAS  763 (793)
T ss_pred             CCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccc-------ccccCCCC
Confidence            43      345566789999999999999999999999999999998877655444321110000       00011234


Q ss_pred             CcEEEEEEecCCCEEEEecCCCeEEEEEC
Q 038577          582 KCFTTLCYSADGSYILAGGSSKYICMYDV  610 (860)
Q Consensus       582 ~~i~~l~~s~~g~~l~~~~~dg~v~vwd~  610 (860)
                      ..|.+++|+|++.+|++|+.||.|++|++
T Consensus       764 ~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        764 QFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             cEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            56999999999999999999999999986

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.9e-31  Score=229.02  Aligned_cols=282  Identities=19%  Similarity=0.266  Sum_probs=250.8

Q ss_pred             ccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc
Q 038577          258 DDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR  337 (860)
Q Consensus       258 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~  337 (860)
                      ..+..++++|..+.|+-+|++.++++.|.+|++|+...+.+++++.+|...|..++.+.|...+++++.+ ..+.+||+.
T Consensus        11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgD-k~v~vwDV~   89 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGD-KAVQVWDVN   89 (307)
T ss_pred             eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCC-ceEEEEEcc
Confidence            3455678899999999999999999999999999999999999999999999999999999999998877 999999999


Q ss_pred             CceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--CeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcE
Q 038577          338 SESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS--GFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTV  415 (860)
Q Consensus       338 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i  415 (860)
                      +|+..+++.+|.+.|+.++|+.+...+++|+.|.++++||.++  .++++.+......|.++...  +..+++|+.||++
T Consensus        90 TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtv  167 (307)
T KOG0316|consen   90 TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTV  167 (307)
T ss_pred             cCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcE
Confidence            9999999999999999999999999999999999999999875  46788888888999999886  4589999999999


Q ss_pred             EEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeE--EEEEcCCCCEEE
Q 038577          416 RAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVH--GLVFSPTNATLA  493 (860)
Q Consensus       416 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~--~l~~s~~~~~l~  493 (860)
                      +.||++.++......   ..+++++.++++++..++++.++ .+++.|-.+|++++.++||...-.  ..+++.....++
T Consensus       168 RtydiR~G~l~sDy~---g~pit~vs~s~d~nc~La~~l~s-tlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~  243 (307)
T KOG0316|consen  168 RTYDIRKGTLSSDYF---GHPITSVSFSKDGNCSLASSLDS-TLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVF  243 (307)
T ss_pred             EEEEeecceeehhhc---CCcceeEEecCCCCEEEEeeccc-eeeecccchhHHHHHhcccccceeeeeeeecccceeEE
Confidence            999999887655443   34789999999999999999999 999999999999999999986544  456777778999


Q ss_pred             EEeCCCcEEEEEccCCcceeEEcccCCC-eEEEEEeeCCCEEEEEeCCCeEEEEe
Q 038577          494 SSSWDKTVRLWNVFEGKGSVESFPHTHD-VLTVVYRPDGRQLACSTLDGQIHFWD  547 (860)
Q Consensus       494 s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg~i~iwd  547 (860)
                      +|++||.|++||+.....+..+..+... +.++.++|.-..++++... .+..|.
T Consensus       244 sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~~~  297 (307)
T KOG0316|consen  244 SGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH-GDLFWY  297 (307)
T ss_pred             eccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC-ceecee
Confidence            9999999999999999877777777766 8999999988778777644 455664

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-30  Score=229.09  Aligned_cols=292  Identities=18%  Similarity=0.287  Sum_probs=251.3

Q ss_pred             ceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecccc
Q 038577          182 PFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFS  261 (860)
Q Consensus       182 ~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (860)
                      +..+.||..+++.+.|+.+|.     +|++++.|.+..+|-...++                            +...+.
T Consensus         3 pi~l~GHERplTqiKyN~eGD-----LlFscaKD~~~~vw~s~nGe----------------------------rlGty~   49 (327)
T KOG0643|consen    3 PILLQGHERPLTQIKYNREGD-----LLFSCAKDSTPTVWYSLNGE----------------------------RLGTYD   49 (327)
T ss_pred             ccccccCccccceEEecCCCc-----EEEEecCCCCceEEEecCCc----------------------------eeeeec
Confidence            466889999999999999999     99999999999999775543                            245677


Q ss_pred             CCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEcc----CCcEEEEEcc
Q 038577          262 QAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK----LGQLLVWEWR  337 (860)
Q Consensus       262 ~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~----~g~i~v~d~~  337 (860)
                      +|.+.|.|+..+-+.+.+++|+.|.++++||+++++++..++.. .++..+.|+++|+.++++..+    .+.|.++|++
T Consensus        50 GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~-~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~  128 (327)
T KOG0643|consen   50 GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN-SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIR  128 (327)
T ss_pred             CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC-CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEcc
Confidence            99999999999999999999999999999999999999988765 489999999999999887653    3789999988


Q ss_pred             -------CceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eEEEeecCCCceEEEEEeeCCCEEEEE
Q 038577          338 -------SESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGF-CFVTFTEHTNAVTALHFMANNHSLLSA  409 (860)
Q Consensus       338 -------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~s~  409 (860)
                             ..++..++..+...++.+-|.|-+++|++|..||.|.+||+.+|. .+.....|...|+.+.+++|..+++++
T Consensus       129 ~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~  208 (327)
T KOG0643|consen  129 DDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITG  208 (327)
T ss_pred             CChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEec
Confidence                   455677788888999999999999999999999999999999984 455667899999999999999999999


Q ss_pred             eCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC-CeEEEEECCCC------------ceEEEecCc
Q 038577          410 SLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS-FEIFVWSMKTG------------RLLDILSGH  476 (860)
Q Consensus       410 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~i~v~d~~~~------------~~~~~~~~h  476 (860)
                      +.|.+-++||..+...++++....  ++.+.+++|-...++.|+... ..|.--+.+.|            +.+..+++|
T Consensus       209 s~Dttakl~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH  286 (327)
T KOG0643|consen  209 SKDTTAKLVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH  286 (327)
T ss_pred             ccCccceeeeccceeeEEEeeecc--cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc
Confidence            999999999999999999988765  789999999888887765432 22333333333            345667899


Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 038577          477 EGPVHGLVFSPTNATLASSSWDKTVRLWNVFEG  509 (860)
Q Consensus       477 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~  509 (860)
                      -++|++++|+|+|+..++|+.||.|++.-....
T Consensus       287 FGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  287 FGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN  319 (327)
T ss_pred             ccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence            999999999999999999999999999865443

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.5e-32  Score=246.53  Aligned_cols=284  Identities=20%  Similarity=0.227  Sum_probs=248.5

Q ss_pred             ccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee---------cCCceeEEEECCCCCEEEEE-eCCeEE
Q 038577           48 PVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR---------FKYPVNAILFSPNGKYIAVG-TGKLVQ  117 (860)
Q Consensus        48 ~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~---------~~~~v~~~~fspdg~~la~~-~~~~i~  117 (860)
                      -+|..+-+.|..|||||+||++++.||-|.+||..+|+....++         +..+|.|+.||.|...||+| .||.|+
T Consensus       209 KFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK  288 (508)
T KOG0275|consen  209 KFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIK  288 (508)
T ss_pred             ecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEE
Confidence            34667778999999999999999999999999999998776554         57889999999999999999 899999


Q ss_pred             EEeCCCCCcccceeEEEEEee-ccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEE
Q 038577          118 IWRSPGFKKEVFAFELIRTLA-DCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCF  196 (860)
Q Consensus       118 iwd~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~  196 (860)
                      ||.+.+|.       +++++. .|+..|+|+.||.|+..+++++.|.++++.-+.++      .....+.||...|+...
T Consensus       289 vWri~tG~-------ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG------K~LKEfrGHsSyvn~a~  355 (508)
T KOG0275|consen  289 VWRIETGQ-------CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG------KCLKEFRGHSSYVNEAT  355 (508)
T ss_pred             EEEEecch-------HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc------hhHHHhcCccccccceE
Confidence            99999998       467776 89999999999999999999999999999999999      77899999999999999


Q ss_pred             EccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCC-
Q 038577          197 FSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRG-  275 (860)
Q Consensus       197 ~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-  275 (860)
                      |++||.     ++++++.||++++|+..+.++...                          ....+...+|.++..-|. 
T Consensus       356 ft~dG~-----~iisaSsDgtvkvW~~KtteC~~T--------------------------fk~~~~d~~vnsv~~~PKn  404 (508)
T KOG0275|consen  356 FTDDGH-----HIISASSDGTVKVWHGKTTECLST--------------------------FKPLGTDYPVNSVILLPKN  404 (508)
T ss_pred             EcCCCC-----eEEEecCCccEEEecCcchhhhhh--------------------------ccCCCCcccceeEEEcCCC
Confidence            999999     999999999999999988765111                          111223445667666664 


Q ss_pred             CCEEEEEEcCCeEEEEECCCceeEEEEeec---CceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCe
Q 038577          276 LDMVVVGFSNGVFGLYQMPDFVCIHLLSIS---REKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDV  352 (860)
Q Consensus       276 ~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v  352 (860)
                      -..++++...+++++.++ .|+.++.+...   .+...+.+.+|.|.++.+.+.+ +.++.+...+|+....+..|...+
T Consensus       405 peh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED-~vlYCF~~~sG~LE~tl~VhEkdv  482 (508)
T KOG0275|consen  405 PEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGED-GVLYCFSVLSGKLERTLPVHEKDV  482 (508)
T ss_pred             CceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccC-cEEEEEEeecCceeeeeecccccc
Confidence            467889999999999999 67777777654   3467888999999999998876 999999999999999999999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEE
Q 038577          353 NCLAYSPDSQLLATGADDNKVKVWT  377 (860)
Q Consensus       353 ~~~~~s~~~~~l~~~~~dg~i~iwd  377 (860)
                      ..++-+|..+.+|+-+.||.+++|.
T Consensus       483 IGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  483 IGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cccccCcccchhhhhcccchhhhcC
Confidence            9999999999999999999999995

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2e-32  Score=249.58  Aligned_cols=276  Identities=20%  Similarity=0.383  Sum_probs=238.0

Q ss_pred             cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEee
Q 038577           92 FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYV  170 (860)
Q Consensus        92 ~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~  170 (860)
                      ....|.|+.+.  ...+++| .|++|+|||.++..       +...+.||++.|.|+.|.  .+.+++|+.|.+|+|||+
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~-------c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv  264 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLE-------CLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDV  264 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccHH-------HHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEec
Confidence            34678999984  5677788 99999999999876       578899999999999995  569999999999999999


Q ss_pred             cccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceee
Q 038577          171 KEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVK  250 (860)
Q Consensus       171 ~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (860)
                      +++      ....++.+|...|..+.|+..       ++++++.|.++.+||+....                       
T Consensus       265 ~tg------e~l~tlihHceaVLhlrf~ng-------~mvtcSkDrsiaVWdm~sps-----------------------  308 (499)
T KOG0281|consen  265 NTG------EPLNTLIHHCEAVLHLRFSNG-------YMVTCSKDRSIAVWDMASPT-----------------------  308 (499)
T ss_pred             cCC------chhhHHhhhcceeEEEEEeCC-------EEEEecCCceeEEEeccCch-----------------------
Confidence            999      778999999999999999865       99999999999999998732                       


Q ss_pred             eEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCc
Q 038577          251 KWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQ  330 (860)
Q Consensus       251 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~  330 (860)
                        .+.....+.+|...|..+.|+.  +++++++.|.+|++|++.+++.++++.+|...|.|+.+.  |+.+++++ .|.+
T Consensus       309 --~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGS-SDnt  381 (499)
T KOG0281|consen  309 --DITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS-SDNT  381 (499)
T ss_pred             --HHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecC-CCce
Confidence              2233567788999999999865  499999999999999999999999999999988888764  45555554 4599


Q ss_pred             EEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---------eEEEeecCCCceEEEEEee
Q 038577          331 LLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGF---------CFVTFTEHTNAVTALHFMA  401 (860)
Q Consensus       331 i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~i~~~~  401 (860)
                      |++||++.|.++..+++|..-|.|+.|.  .+.+++|+.||+|++||+..+.         ++..+..|++.|..+.|. 
T Consensus       382 IRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD-  458 (499)
T KOG0281|consen  382 IRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD-  458 (499)
T ss_pred             EEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec-
Confidence            9999999999999999999999999995  6789999999999999998653         345566799999999995 


Q ss_pred             CCCEEEEEeCCCcEEEEEccccce
Q 038577          402 NNHSLLSASLDGTVRAWDLFRYRN  425 (860)
Q Consensus       402 ~~~~l~s~~~dg~i~~wd~~~~~~  425 (860)
                       ...+++++.|.+|-+||+.++..
T Consensus       459 -~fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  459 -EFQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             -ceEEEeccCCCeEEEEEcCCCCc
Confidence             55899999999999999977643

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.5e-29  Score=290.13  Aligned_cols=284  Identities=19%  Similarity=0.269  Sum_probs=236.6

Q ss_pred             cccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCc----e----eEEEEeecCceeEEEEEeeC-CCEEEEEEccCC
Q 038577          259 DFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDF----V----CIHLLSISREKITTAVFNEL-GNWLVFGCAKLG  329 (860)
Q Consensus       259 ~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~----~----~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~~~g  329 (860)
                      .+..|...|.+++|+|+++++++|+.|+.|++|+....    .    ....+. +...+.+++|++. +..+++++. ||
T Consensus       478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~-Dg  555 (793)
T PLN00181        478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNF-EG  555 (793)
T ss_pred             cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeC-CC
Confidence            34558889999999999999999999999999997532    1    112222 3457889999875 566666555 59


Q ss_pred             cEEEEEccCceEEEEecCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEe-eCCCEEE
Q 038577          330 QLLVWEWRSESYILKQQGHYFDVNCLAYSP-DSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFM-ANNHSLL  407 (860)
Q Consensus       330 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~  407 (860)
                      .|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||.|++||+.++..+..+..+ ..+.++.|+ +++..++
T Consensus       556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~la  634 (793)
T PLN00181        556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLA  634 (793)
T ss_pred             eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEE
Confidence            999999999999999999999999999997 7889999999999999999999888888754 689999995 5689999


Q ss_pred             EEeCCCcEEEEEccccce-eeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCC------CceEEEecCcccCe
Q 038577          408 SASLDGTVRAWDLFRYRN-FRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT------GRLLDILSGHEGPV  480 (860)
Q Consensus       408 s~~~dg~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~------~~~~~~~~~h~~~v  480 (860)
                      +|+.||.|++||+++.+. ...+ ..+...+.++.|. ++.++++++.|+ .|++||+..      .+.+..+.+|...+
T Consensus       635 tgs~dg~I~iwD~~~~~~~~~~~-~~h~~~V~~v~f~-~~~~lvs~s~D~-~ikiWd~~~~~~~~~~~~l~~~~gh~~~i  711 (793)
T PLN00181        635 FGSADHKVYYYDLRNPKLPLCTM-IGHSKTVSYVRFV-DSSTLVSSSTDN-TLKLWDLSMSISGINETPLHSFMGHTNVK  711 (793)
T ss_pred             EEeCCCeEEEEECCCCCccceEe-cCCCCCEEEEEEe-CCCEEEEEECCC-EEEEEeCCCCccccCCcceEEEcCCCCCe
Confidence            999999999999987653 3333 3455678899997 788999999998 999999974      35778899999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEE-------------cccCCCeEEEEEeeCCCEEEEEeCCCeEEEEe
Q 038577          481 HGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVES-------------FPHTHDVLTVVYRPDGRQLACSTLDGQIHFWD  547 (860)
Q Consensus       481 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  547 (860)
                      ..++|+|++.+|++|+.|+.|++|+..........             ..+...|.+++|+|++..|++|+.||.|+||+
T Consensus       712 ~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~  791 (793)
T PLN00181        712 NFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE  791 (793)
T ss_pred             eEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence            99999999999999999999999997655322111             22455699999999999999999999999998


Q ss_pred             C
Q 038577          548 P  548 (860)
Q Consensus       548 ~  548 (860)
                      +
T Consensus       792 ~  792 (793)
T PLN00181        792 M  792 (793)
T ss_pred             c
Confidence            6

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=3.9e-32  Score=247.71  Aligned_cols=281  Identities=22%  Similarity=0.341  Sum_probs=232.9

Q ss_pred             ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 038577          307 EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVT  386 (860)
Q Consensus       307 ~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  386 (860)
                      ..|.|+.+  |...++++.. |.+|++||..+..+...+.+|.+.|.|+.|.  .+.+++|+.|.+|++||.++++++.+
T Consensus       198 kgVYClQY--DD~kiVSGlr-DnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~t  272 (499)
T KOG0281|consen  198 KGVYCLQY--DDEKIVSGLR-DNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNT  272 (499)
T ss_pred             CceEEEEe--cchhhhcccc-cCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhH
Confidence            45666655  3455665554 5999999999999999999999999999985  55999999999999999999999999


Q ss_pred             eecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcccccee--eEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEEC
Q 038577          387 FTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNF--RTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSM  464 (860)
Q Consensus       387 ~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~  464 (860)
                      +..|...|..+.|+..  ++++++.|.++.+||+.....+  +.....+...+..+.|+  .+++++++.|. +|++|++
T Consensus       273 lihHceaVLhlrf~ng--~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDR-TikvW~~  347 (499)
T KOG0281|consen  273 LIHHCEAVLHLRFSNG--YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDR-TIKVWST  347 (499)
T ss_pred             HhhhcceeEEEEEeCC--EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCc-eEEEEec
Confidence            9999999999999754  8999999999999999765432  22334455566766665  45999999998 9999999


Q ss_pred             CCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEE
Q 038577          465 KTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIH  544 (860)
Q Consensus       465 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  544 (860)
                      .+++.++++.+|...|.|+.+  .++++++|+.|.+|++||+..|.++..+.+|..-|.++.|  |.+.+++|+.||+|+
T Consensus       348 st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkik  423 (499)
T KOG0281|consen  348 STCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIK  423 (499)
T ss_pred             cceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEE
Confidence            999999999999999999998  6999999999999999999999999999999999999999  567899999999999


Q ss_pred             EEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCce
Q 038577          545 FWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQV  614 (860)
Q Consensus       545 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~  614 (860)
                      +||+.++.......+.           .-......+.+.|..+.|  |...+++++.|.+|.|||+.++.
T Consensus       424 vWdl~aaldpra~~~~-----------~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~  480 (499)
T KOG0281|consen  424 VWDLQAALDPRAPAST-----------LCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGP  480 (499)
T ss_pred             EEecccccCCcccccc-----------hHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCC
Confidence            9999876533221110           001112234456888998  77889999999999999998774

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.98  E-value=1.1e-31  Score=256.38  Aligned_cols=287  Identities=15%  Similarity=0.216  Sum_probs=244.5

Q ss_pred             EEeeccCCccCeeEEEEcC-CCCEEEEEcCCCcEEEEEccc-CeEEEEee-cCCceeEEEECCCCCEEEEE-eCCeEEEE
Q 038577           44 TVTLPVESSSNICRIAVSP-DGTFLLTVDENQRCHFINLHC-HVVLHRVR-FKYPVNAILFSPNGKYIAVG-TGKLVQIW  119 (860)
Q Consensus        44 ~~~~~~~h~~~v~~va~sp-dg~~la~~~~d~~i~vwd~~~-~~~~~~~~-~~~~v~~~~fspdg~~la~~-~~~~i~iw  119 (860)
                      ....+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +.+++++. |..+|.+++|+++|..+.++ .|+.|++|
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw  285 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW  285 (503)
T ss_pred             heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence            3566779999999999999 899999999999999999976 89999988 99999999999999877776 89999999


Q ss_pred             eCCCCCcccceeEEEEEeeccCCCeEEEEEcCCC-CeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEc
Q 038577          120 RSPGFKKEVFAFELIRTLADCNDKVTALNWSPDS-NYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFS  198 (860)
Q Consensus       120 d~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~  198 (860)
                      |+++|+.       ...+. -...++|+.|.||+ +.+++|+.|+.|+.||+.++      ........|-+.|..+.|-
T Consensus       286 DtETG~~-------~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~------kvvqeYd~hLg~i~~i~F~  351 (503)
T KOG0282|consen  286 DTETGQV-------LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG------KVVQEYDRHLGAILDITFV  351 (503)
T ss_pred             ccccceE-------EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccch------HHHHHHHhhhhheeeeEEc
Confidence            9999983       44443 24457999999999 88999999999999999999      6778888999999999999


Q ss_pred             cCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCE
Q 038577          199 VDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDM  278 (860)
Q Consensus       199 ~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  278 (860)
                      +++.     ++++.++|+++++|+......                           .+...........|+..+|++++
T Consensus       352 ~~g~-----rFissSDdks~riWe~~~~v~---------------------------ik~i~~~~~hsmP~~~~~P~~~~  399 (503)
T KOG0282|consen  352 DEGR-----RFISSSDDKSVRIWENRIPVP---------------------------IKNIADPEMHTMPCLTLHPNGKW  399 (503)
T ss_pred             cCCc-----eEeeeccCccEEEEEcCCCcc---------------------------chhhcchhhccCcceecCCCCCe
Confidence            9999     999999999999999887533                           12222233446788999999999


Q ss_pred             EEEEEcCCeEEEEECCCcee---EEEEeecC--ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeE
Q 038577          279 VVVGFSNGVFGLYQMPDFVC---IHLLSISR--EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVN  353 (860)
Q Consensus       279 l~~~~~~g~i~~~~~~~~~~---~~~~~~~~--~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~  353 (860)
                      ++.-+.++.|.++.+...-.   ...+.+|.  +--..+.|||||.+|+++.++ |.+.+||+++-+.+..+..|..++.
T Consensus       400 ~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsd-G~v~~wdwkt~kl~~~lkah~~~ci  478 (503)
T KOG0282|consen  400 FAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSD-GKVNFWDWKTTKLVSKLKAHDQPCI  478 (503)
T ss_pred             ehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCC-ccEEEeechhhhhhhccccCCcceE
Confidence            99999999999998753221   22334443  345678999999999999887 9999999999999999999999999


Q ss_pred             EEEEcCC-CCEEEEEeCCCcEEEEE
Q 038577          354 CLAYSPD-SQLLATGADDNKVKVWT  377 (860)
Q Consensus       354 ~~~~s~~-~~~l~~~~~dg~i~iwd  377 (860)
                      .+.|+|. ...+|+++.||.|++|+
T Consensus       479 ~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  479 GVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EEEecCCCcceeEecccCceeEecC
Confidence            9999996 45899999999999996

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=7e-29  Score=225.49  Aligned_cols=290  Identities=17%  Similarity=0.270  Sum_probs=245.6

Q ss_pred             eeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeC--CCcEE
Q 038577          297 VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGAD--DNKVK  374 (860)
Q Consensus       297 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~  374 (860)
                      +..+.++.....|.++.|+++|..+++++.+ ..+++||..+++.+..+..+...+..++|......++.++.  |.+|+
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~d-Dsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr   83 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLITSSED-DSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR   83 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEEEecCC-CeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence            3344555567799999999999999996554 89999999999999999888888999999888777777776  88999


Q ss_pred             EEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEec
Q 038577          375 VWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTL  454 (860)
Q Consensus       375 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  454 (860)
                      ..++.+.+.++.+.+|...|.+++.+|-+..+++++.|++|++||++..++...+.....   ..++++|.|-++|++..
T Consensus        84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~---pi~AfDp~GLifA~~~~  160 (311)
T KOG1446|consen   84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR---PIAAFDPEGLIFALANG  160 (311)
T ss_pred             EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC---cceeECCCCcEEEEecC
Confidence            999999999999999999999999999999999999999999999998888777766544   57899999999999999


Q ss_pred             CCCeEEEEECCCC--ceEEEec---CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCC---eEEEE
Q 038577          455 DSFEIFVWSMKTG--RLLDILS---GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHD---VLTVV  526 (860)
Q Consensus       455 ~~~~i~v~d~~~~--~~~~~~~---~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~  526 (860)
                      .+ .|++||++.-  .+...+.   +...+.+.+.|||||+++..+...+.+++.|.-+|.....+..+...   -...+
T Consensus       161 ~~-~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~  239 (311)
T KOG1446|consen  161 SE-LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT  239 (311)
T ss_pred             CC-eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence            88 9999999863  3444443   34678899999999999999999999999999999866655544333   26789


Q ss_pred             EeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEE
Q 038577          527 YRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYIC  606 (860)
Q Consensus       527 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~  606 (860)
                      |+||++++++|+.||+|++|++++|..+..+.+...                   .++.++.|.|.-.++++++  ..+.
T Consensus       240 ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~-------------------~~~~~~~fnP~~~mf~sa~--s~l~  298 (311)
T KOG1446|consen  240 FTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNG-------------------GPVSCVRFNPRYAMFVSAS--SNLV  298 (311)
T ss_pred             ECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCC-------------------CCccccccCCceeeeeecC--ceEE
Confidence            999999999999999999999999999999988632                   3588999998877777655  5577


Q ss_pred             EEECCC
Q 038577          607 MYDVAD  612 (860)
Q Consensus       607 vwd~~~  612 (860)
                      +|=...
T Consensus       299 fw~p~~  304 (311)
T KOG1446|consen  299 FWLPDE  304 (311)
T ss_pred             EEeccc
Confidence            775543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=7.5e-30  Score=236.24  Aligned_cols=278  Identities=23%  Similarity=0.371  Sum_probs=239.3

Q ss_pred             CCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCE---EEEEEccCCcEEEEEccC
Q 038577          262 QAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNW---LVFGCAKLGQLLVWEWRS  338 (860)
Q Consensus       262 ~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~---l~~~~~~~g~i~v~d~~~  338 (860)
                      .|...|.++...  ++.+++|+.||.+++|+. .|+....+.+|.+++.+++|......   +++++ .|.++++|.++.
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas-~Dqtl~Lw~~~~  178 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSAS-MDQTLRLWKWNV  178 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEec-CCceEEEEEecC
Confidence            356677777766  679999999999999999 78999999999999998888654433   55554 559999999987


Q ss_pred             ceEEEE----ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC-------------------------CCeeEEEeec
Q 038577          339 ESYILK----QQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVS-------------------------SGFCFVTFTE  389 (860)
Q Consensus       339 ~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~-------------------------~~~~~~~~~~  389 (860)
                      +.....    -.+|...|.++...++|..+++|+.|..+.+|+..                         ++.++.++.+
T Consensus       179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G  258 (423)
T KOG0313|consen  179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG  258 (423)
T ss_pred             chhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence            754332    25999999999999999999999999999999932                         1245667889


Q ss_pred             CCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCc-
Q 038577          390 HTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGR-  468 (860)
Q Consensus       390 ~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~-  468 (860)
                      |..+|.++.|++ ...+++++.|.+|+.||+.++.....+..+.  .+.++..+|..++|++|+.|. .+++||.+++. 
T Consensus       259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k--sl~~i~~~~~~~Ll~~gssdr-~irl~DPR~~~g  334 (423)
T KOG0313|consen  259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK--SLNCISYSPLSKLLASGSSDR-HIRLWDPRTGDG  334 (423)
T ss_pred             cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc--ceeEeecccccceeeecCCCC-ceeecCCCCCCC
Confidence            999999999988 5689999999999999999999888877654  689999999999999999999 99999998753 


Q ss_pred             --eEEEecCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEEccCCc-ceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEE
Q 038577          469 --LLDILSGHEGPVHGLVFSPTNA-TLASSSWDKTVRLWNVFEGK-GSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIH  544 (860)
Q Consensus       469 --~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  544 (860)
                        ....+.+|.+.|.++.|+|... .|++++.|+++++||+++.+ ++..+.+|...|.++.|. ++..+++|+.|.+|+
T Consensus       335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~  413 (423)
T KOG0313|consen  335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLR  413 (423)
T ss_pred             ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEE
Confidence              4578899999999999999765 58899999999999999887 788888999999999998 677999999999999


Q ss_pred             EEeC
Q 038577          545 FWDP  548 (860)
Q Consensus       545 iwd~  548 (860)
                      |+.-
T Consensus       414 i~~~  417 (423)
T KOG0313|consen  414 IFKG  417 (423)
T ss_pred             Eecc
Confidence            9864

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=1.9e-30  Score=233.11  Aligned_cols=302  Identities=22%  Similarity=0.349  Sum_probs=248.4

Q ss_pred             EEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccc------------cCcccccceEeecCCCcEEEEEEccCC
Q 038577          134 IRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKL------------KGIHTNKPFLLLGHRDSVVGCFFSVDK  201 (860)
Q Consensus       134 ~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~------------~~~~~~~~~~~~~h~~~i~~~~~~~~~  201 (860)
                      ...+..|++++.+.+|||||.++|+|+.|..|+|.|++...            .........++..|.+.|+.+.|+|..
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            35678899999999999999999999999999999987321            111112456788899999999999999


Q ss_pred             CCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEE
Q 038577          202 KTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVV  281 (860)
Q Consensus       202 ~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  281 (860)
                      .     .|++++.|++++++|......                          .+.........+|.++.|+|.|+++++
T Consensus       185 ~-----ILiS~srD~tvKlFDfsK~sa--------------------------KrA~K~~qd~~~vrsiSfHPsGefllv  233 (430)
T KOG0640|consen  185 T-----ILISGSRDNTVKLFDFSKTSA--------------------------KRAFKVFQDTEPVRSISFHPSGEFLLV  233 (430)
T ss_pred             h-----eEEeccCCCeEEEEecccHHH--------------------------HHHHHHhhccceeeeEeecCCCceEEE
Confidence            9     999999999999999876322                          011122234568999999999999999


Q ss_pred             EEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCC
Q 038577          282 GFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDS  361 (860)
Q Consensus       282 ~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~  361 (860)
                      |+....+++||+.+.++...-.            |          +                  ..|.+.|+++.+++.|
T Consensus       234 gTdHp~~rlYdv~T~Qcfvsan------------P----------d------------------~qht~ai~~V~Ys~t~  273 (430)
T KOG0640|consen  234 GTDHPTLRLYDVNTYQCFVSAN------------P----------D------------------DQHTGAITQVRYSSTG  273 (430)
T ss_pred             ecCCCceeEEeccceeEeeecC------------c----------c------------------cccccceeEEEecCCc
Confidence            9999999999997665432111            0          1                  3688999999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCeeEEEeec-CC-CceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCC----
Q 038577          362 QLLATGADDNKVKVWTVSSGFCFVTFTE-HT-NAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSR----  435 (860)
Q Consensus       362 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~-~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~----  435 (860)
                      ++.++|+.||.|++||--+++++.++.. |. ..|.+..|..+++++++.|.|..+++|.+.+++++..+......    
T Consensus       274 ~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~  353 (430)
T KOG0640|consen  274 SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQK  353 (430)
T ss_pred             cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchh
Confidence            9999999999999999999999988753 44 47899999999999999999999999999999999988765321    


Q ss_pred             cEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEe-cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 038577          436 QFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDIL-SGHEGPVHGLVFSPTNATLASSSWDKTVRLWNV  506 (860)
Q Consensus       436 ~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~  506 (860)
                      .-+...|+....+++.-....+.+.-||.+++..+..+ -+|.+.+..+.-||.+.-+.+|+.|..+++|--
T Consensus       354 ~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  354 HRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             hhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence            22445677888888887777678999999988766544 479999999999999999999999999999964

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=7.3e-30  Score=224.87  Aligned_cols=295  Identities=18%  Similarity=0.252  Sum_probs=245.2

Q ss_pred             EecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcccc
Q 038577          344 KQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRY  423 (860)
Q Consensus       344 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~  423 (860)
                      .+++|..+++.+.++.+|.+|.+++.|.+..+|-..+|+.+.++.+|.+.|+++..+.+.+.+++|+.|.++++||+.++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            35789999999999999999999999999999999899999999999999999999999999999999999999999999


Q ss_pred             ceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC----CeEEEEECC-------CCceEEEecCcccCeEEEEEcCCCCEE
Q 038577          424 RNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS----FEIFVWSMK-------TGRLLDILSGHEGPVHGLVFSPTNATL  492 (860)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~i~v~d~~-------~~~~~~~~~~h~~~v~~l~~s~~~~~l  492 (860)
                      +++..+..+.  .+..+.|+++|+++++...+.    +.|.++|++       ..++...+..+...++...|.|-+++|
T Consensus        85 k~la~~k~~~--~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i  162 (327)
T KOG0643|consen   85 KQLATWKTNS--PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI  162 (327)
T ss_pred             cEEEEeecCC--eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence            9999888765  689999999999998876542    379999998       456788888899999999999999999


Q ss_pred             EEEeCCCcEEEEEccCCcceeEE-cccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccc
Q 038577          493 ASSSWDKTVRLWNVFEGKGSVES-FPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTD  571 (860)
Q Consensus       493 ~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  571 (860)
                      ++|..||.|.+||++++...... ..|...|+.+.++||..++++++.|.+-++||..+-+.+.++....+         
T Consensus       163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~P---------  233 (327)
T KOG0643|consen  163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERP---------  233 (327)
T ss_pred             EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccc---------
Confidence            99999999999999998766555 46999999999999999999999999999999999999999988764         


Q ss_pred             cccccccCCCCcEEEEEEecCCCEEEEecCCCeEEE--EECCCceEEEEEeecccccccceeeeccCCCCCCCCCCcccc
Q 038577          572 RRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICM--YDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLID  649 (860)
Q Consensus       572 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  649 (860)
                                  +++.+++|-..+++.|+.....-|  =+.+.|+.-.+|                              
T Consensus       234 ------------vN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArF------------------------------  271 (327)
T KOG0643|consen  234 ------------VNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARF------------------------------  271 (327)
T ss_pred             ------------ccceecccccceEEecCCceeeeeeeecccccchhhhH------------------------------
Confidence                        899999999988888764321111  011111100000                              


Q ss_pred             CCCCCccccccccccCccccCCCCCCCCCCCCccceeEEEECCCCCeEEEeccccEE-EE
Q 038577          650 DDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVL-VY  708 (860)
Q Consensus       650 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~-i~  708 (860)
                                       ....+...+.+...|-+|+.+++|+|||+.+++++.||.+ +.
T Consensus       272 -----------------yh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h  314 (327)
T KOG0643|consen  272 -----------------YHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH  314 (327)
T ss_pred             -----------------HHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence                             0000111122345667799999999999999999999954 53

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=2.1e-29  Score=221.28  Aligned_cols=277  Identities=18%  Similarity=0.255  Sum_probs=244.8

Q ss_pred             EEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEe--cCcccCeEEEEEcCC-CCEEEEEeCCCcEEEE
Q 038577          300 HLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ--QGHYFDVNCLAYSPD-SQLLATGADDNKVKVW  376 (860)
Q Consensus       300 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~--~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw  376 (860)
                      +.++.+..++.+++|+.+|..++.++.+ +++.+|++...+.....  .+|.+.|..++|+|. ...+++++.|.+|++|
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~d-ktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w   92 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFD-KTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW   92 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccC-CceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence            4456677899999999999999999887 99999999887555443  678889999999884 5689999999999999


Q ss_pred             ECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC
Q 038577          377 TVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS  456 (860)
Q Consensus       377 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  456 (860)
                      |.+++++........+.+ -+.|+|+|.+++.++.|..|.+.|.++.+.....+...  .+..++++.++.+++.....|
T Consensus        93 d~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~--e~ne~~w~~~nd~Fflt~GlG  169 (313)
T KOG1407|consen   93 DIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF--EVNEISWNNSNDLFFLTNGLG  169 (313)
T ss_pred             EeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc--eeeeeeecCCCCEEEEecCCc
Confidence            999999999887655554 57899999999999999999999999888776655443  567888888888888777767


Q ss_pred             CeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEE
Q 038577          457 FEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLAC  536 (860)
Q Consensus       457 ~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  536 (860)
                       .|.|.....-+++..+++|.....||.|+|+|+++|+|+.|..+.+||+...-+...+..+.-+|+.+.||.||++||+
T Consensus       170 -~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lAS  248 (313)
T KOG1407|consen  170 -CVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLAS  248 (313)
T ss_pred             -eEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeec
Confidence             9999999999999999999999999999999999999999999999999998888888899999999999999999999


Q ss_pred             EeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCC
Q 038577          537 STLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSS  602 (860)
Q Consensus       537 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d  602 (860)
                      |++|..|-|=++++|..+..++....                     ...++|.|...+|+.+++|
T Consensus       249 aSEDh~IDIA~vetGd~~~eI~~~~~---------------------t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  249 ASEDHFIDIAEVETGDRVWEIPCEGP---------------------TFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             cCccceEEeEecccCCeEEEeeccCC---------------------ceeEEecCCCceeeEEecC
Confidence            99999999999999999999987654                     7999999999999987664

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=9.5e-31  Score=227.89  Aligned_cols=290  Identities=18%  Similarity=0.258  Sum_probs=254.5

Q ss_pred             EEEeecCceeEEEEEee---CCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038577          300 HLLSISREKITTAVFNE---LGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVW  376 (860)
Q Consensus       300 ~~~~~~~~~i~~~~~s~---~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  376 (860)
                      .+-.+|..+|..++|+|   +|-+|++++.+ |.-.+-+-+++..+.++.+|.+.|.+...+.+...-++++.|=+-++|
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd-~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw   86 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKD-GKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW   86 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccC-CCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence            44567888999999984   77777777665 888888889999999999999999999999999899999999999999


Q ss_pred             ECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC
Q 038577          377 TVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS  456 (860)
Q Consensus       377 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  456 (860)
                      |.-+|..+..+. |..-|.+++|+.|.++|++|+.+.-+++||++..+....-...+...|..+.|....+.++++..++
T Consensus        87 ~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~  165 (334)
T KOG0278|consen   87 DAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK  165 (334)
T ss_pred             hhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence            999999998885 8999999999999999999999999999999887765555556677888888988888888887777


Q ss_pred             CeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEE
Q 038577          457 FEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLAC  536 (860)
Q Consensus       457 ~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  536 (860)
                       .|++||.++++.++.+. ...+|+++.++++|++|.++ ..+.|.+||..+-. +.+....+..|.+..++|+...+++
T Consensus       166 -tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~-~lKs~k~P~nV~SASL~P~k~~fVa  241 (334)
T KOG0278|consen  166 -TVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFG-LLKSYKMPCNVESASLHPKKEFFVA  241 (334)
T ss_pred             -ceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEecccccc-ceeeccCccccccccccCCCceEEe
Confidence             99999999999999987 57789999999999877665 46779999998876 4555567788999999999999999


Q ss_pred             EeCCCeEEEEeCCCCceeEEE-ecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceE
Q 038577          537 STLDGQIHFWDPLNGELMYTI-EGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVL  615 (860)
Q Consensus       537 ~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~  615 (860)
                      |+.|+.++.||..+|+.+..+ ++|..                    +|.++.|||||..-++|++||+|++|-+..++.
T Consensus       242 Gged~~~~kfDy~TgeEi~~~nkgh~g--------------------pVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  242 GGEDFKVYKFDYNTGEEIGSYNKGHFG--------------------PVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             cCcceEEEEEeccCCceeeecccCCCC--------------------ceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence            999999999999999998885 66664                    699999999999999999999999999877653

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=1.3e-30  Score=227.08  Aligned_cols=290  Identities=19%  Similarity=0.221  Sum_probs=258.8

Q ss_pred             ccccCCCCceEEEEecC---CCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEE
Q 038577          258 DDFSQAPSKVTACDYHR---GLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVW  334 (860)
Q Consensus       258 ~~~~~~~~~v~~~~~~~---~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~  334 (860)
                      ....+|..+|..++|+|   +|-+|++++.||.-.+-+-+++.-+.++.+|.+.|.+...+.+...-++++.+ -+-++|
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaad-ftakvw   86 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAAD-FTAKVW   86 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhccc-chhhhh
Confidence            34467888999999875   78889999999999999999999999999999999999999887777776665 889999


Q ss_pred             EccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEeecCCCceEEEEEeeCCCEEEEEeCCC
Q 038577          335 EWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSG-FCFVTFTEHTNAVTALHFMANNHSLLSASLDG  413 (860)
Q Consensus       335 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg  413 (860)
                      |.-++..+..+ .|..-|.+++|+.|.++|++|+.+.-+++||++.. .+..++.+|.+.|..+.|+...+.++++..|+
T Consensus        87 ~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~  165 (334)
T KOG0278|consen   87 DAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK  165 (334)
T ss_pred             hhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence            99999888776 47778999999999999999999999999999865 45678889999999999999999999999999


Q ss_pred             cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEE
Q 038577          414 TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLA  493 (860)
Q Consensus       414 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~  493 (860)
                      +||+||.++++.++.+..++  .+.++.++++|+++.++...  .|.+||..+..+++.++ -.-.|.+..++|+...++
T Consensus       166 tVRLWD~rTgt~v~sL~~~s--~VtSlEvs~dG~ilTia~gs--sV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fV  240 (334)
T KOG0278|consen  166 TVRLWDHRTGTEVQSLEFNS--PVTSLEVSQDGRILTIAYGS--SVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFV  240 (334)
T ss_pred             ceEEEEeccCcEEEEEecCC--CCcceeeccCCCEEEEecCc--eeEEeccccccceeecc-CccccccccccCCCceEE
Confidence            99999999999999998776  68999999999999887655  79999999999988877 456789999999999999


Q ss_pred             EEeCCCcEEEEEccCCcceeEE-cccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcee
Q 038577          494 SSSWDKTVRLWNVFEGKGSVES-FPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELM  554 (860)
Q Consensus       494 s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  554 (860)
                      +|+.|..++.||..+++.+... .+|.++|.++.|+|||...++|+.||+|++|....++.-
T Consensus       241 aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  241 AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            9999999999999999977774 789999999999999999999999999999998766543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=5.5e-31  Score=237.89  Aligned_cols=291  Identities=21%  Similarity=0.351  Sum_probs=256.9

Q ss_pred             cCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCc
Q 038577          187 GHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSK  266 (860)
Q Consensus       187 ~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (860)
                      +....+.+..|+||++     +|++++.||.|.+|+..++...++                    ...+....+..+...
T Consensus       211 g~KSh~EcA~FSPDgq-----yLvsgSvDGFiEVWny~~GKlrKD--------------------LkYQAqd~fMMmd~a  265 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQ-----YLVSGSVDGFIEVWNYTTGKLRKD--------------------LKYQAQDNFMMMDDA  265 (508)
T ss_pred             ccccchhheeeCCCCc-----eEeeccccceeeeehhccchhhhh--------------------hhhhhhcceeecccc
Confidence            5566788899999999     999999999999999988755222                    122233445567789


Q ss_pred             eEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEe-ecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEe
Q 038577          267 VTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLS-ISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ  345 (860)
Q Consensus       267 v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~  345 (860)
                      |.|+.|+.|..++++|+.||.|.+|.+.+|.+++.+. .|...|+++.|+.|+..+++++.+ .++++--+++|+.+..+
T Consensus       266 Vlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD-~tvRiHGlKSGK~LKEf  344 (508)
T KOG0275|consen  266 VLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFD-QTVRIHGLKSGKCLKEF  344 (508)
T ss_pred             eEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhccccc-ceEEEeccccchhHHHh
Confidence            9999999999999999999999999999999999887 788899999999999999998776 99999999999999999


Q ss_pred             cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecC--CCceEEEEEeeCC-CEEEEEeCCCcEEEEEccc
Q 038577          346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEH--TNAVTALHFMANN-HSLLSASLDGTVRAWDLFR  422 (860)
Q Consensus       346 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~~~  422 (860)
                      ++|...|+...|+++|..+++++.||+|++|+..+.+++.+++..  .-+|..+...|.+ ..++.+...+++.+.++ .
T Consensus       345 rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-q  423 (508)
T KOG0275|consen  345 RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-Q  423 (508)
T ss_pred             cCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-c
Confidence            999999999999999999999999999999999999999988753  4478888877754 67889999999999987 5


Q ss_pred             cceeeEeeCCC--CCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCc
Q 038577          423 YRNFRTFTTPS--SRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKT  500 (860)
Q Consensus       423 ~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~  500 (860)
                      ++.++.+....  .....+.+.+|.|.++++.+.|+ .++.|...+|++.+.+.-|...|-.++-+|..+.+|+-+.||.
T Consensus       424 GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~-vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgl  502 (508)
T KOG0275|consen  424 GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDG-VLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGL  502 (508)
T ss_pred             ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCc-EEEEEEeecCceeeeeecccccccccccCcccchhhhhcccch
Confidence            66677766443  44678889999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             EEEEE
Q 038577          501 VRLWN  505 (860)
Q Consensus       501 i~iwd  505 (860)
                      +++|.
T Consensus       503 lKLWk  507 (508)
T KOG0275|consen  503 LKLWK  507 (508)
T ss_pred             hhhcC
Confidence            99995

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=7.2e-28  Score=218.92  Aligned_cols=288  Identities=18%  Similarity=0.268  Sum_probs=248.3

Q ss_pred             ccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEc-cCCcEEEEEc
Q 038577          258 DDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEW  336 (860)
Q Consensus       258 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-~~g~i~v~d~  336 (860)
                      ..+......|.++.|+++|..+++++.|..+++||..+++...++..+...+..++|......++.++. .|.+|+..++
T Consensus         8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl   87 (311)
T KOG1446|consen    8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL   87 (311)
T ss_pred             cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence            334456778999999999999999999999999999999999999999999999999987777776655 3589999999


Q ss_pred             cCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEE
Q 038577          337 RSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVR  416 (860)
Q Consensus       337 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~  416 (860)
                      .+.+.++.+.+|...|.+++.+|-+..+++++.|++|++||++..++...+....  -..++|.|.|-+++++.....|+
T Consensus        88 ~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~AfDp~GLifA~~~~~~~Ik  165 (311)
T KOG1446|consen   88 HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAAFDPEGLIFALANGSELIK  165 (311)
T ss_pred             ecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC--CcceeECCCCcEEEEecCCCeEE
Confidence            9999999999999999999999999999999999999999999888877775433  34578999999999888888999


Q ss_pred             EEEcccc--ceeeEeeC--CCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCe---EEEEEcCCC
Q 038577          417 AWDLFRY--RNFRTFTT--PSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPV---HGLVFSPTN  489 (860)
Q Consensus       417 ~wd~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v---~~l~~s~~~  489 (860)
                      +||++..  .+...+..  +...+...+.|||||+++++++..+ .+++.|.-+|.....+.++...-   ...+|+||+
T Consensus       166 LyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s-~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds  244 (311)
T KOG1446|consen  166 LYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS-FIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS  244 (311)
T ss_pred             EEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC-cEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC
Confidence            9999875  33444433  4456789999999999999999998 99999999999998888775443   577899999


Q ss_pred             CEEEEEeCCCcEEEEEccCCcceeEEcc-cCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCC
Q 038577          490 ATLASSSWDKTVRLWNVFEGKGSVESFP-HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLN  550 (860)
Q Consensus       490 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  550 (860)
                      +++.+|+.||+|.+|+++++.....+.+ +..++.++.|+|.-.+++++  +..+.+|=...
T Consensus       245 ~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~  304 (311)
T KOG1446|consen  245 KFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDE  304 (311)
T ss_pred             cEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEeccc
Confidence            9999999999999999999998888877 78999999999987777766  56688886543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=5.2e-29  Score=218.83  Aligned_cols=281  Identities=17%  Similarity=0.242  Sum_probs=242.7

Q ss_pred             EEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcC
Q 038577          135 RTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR  214 (860)
Q Consensus       135 ~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~  214 (860)
                      +.+.+|...|.+++|+.+|..|++|+.|+++.+|+++.. ..   .......+|.+.|..++|.|....    .+++++.
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~---~~~~~~~gh~~svdql~w~~~~~d----~~atas~   85 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RF---RKELVYRGHTDSVDQLCWDPKHPD----LFATASG   85 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-hh---hhhhcccCCCcchhhheeCCCCCc----ceEEecC
Confidence            456789999999999999999999999999999999877 22   345567899999999999887665    9999999


Q ss_pred             CccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECC
Q 038577          215 DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMP  294 (860)
Q Consensus       215 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~  294 (860)
                      |.+|++||...+.+..                            .. .....=.-+.|+|+|++++++..|..|...|..
T Consensus        86 dk~ir~wd~r~~k~~~----------------------------~i-~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r  136 (313)
T KOG1407|consen   86 DKTIRIWDIRSGKCTA----------------------------RI-ETKGENINITWSPDGEYIAVGNKDDRITFIDAR  136 (313)
T ss_pred             CceEEEEEeccCcEEE----------------------------Ee-eccCcceEEEEcCCCCEEEEecCcccEEEEEec
Confidence            9999999998865411                            01 112233467899999999999999999999998


Q ss_pred             CceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 038577          295 DFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVK  374 (860)
Q Consensus       295 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  374 (860)
                      +.+.....+.. ..+..++|+-++..++...+. |.|.|.....-+.+..++.|.....|+.|+|+|+++|+|+.|..+.
T Consensus       137 ~~~~~~~~~~~-~e~ne~~w~~~nd~Fflt~Gl-G~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvS  214 (313)
T KOG1407|consen  137 TYKIVNEEQFK-FEVNEISWNNSNDLFFLTNGL-GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVS  214 (313)
T ss_pred             ccceeehhccc-ceeeeeeecCCCCEEEEecCC-ceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceee
Confidence            87776655443 367788898777777776665 9999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEec
Q 038577          375 VWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTL  454 (860)
Q Consensus       375 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  454 (860)
                      +||++.--+++.+..+.-+|..+.|+.+|++|++++.|..|-|=++.++..+..++...  +...++|+|...+||.++.
T Consensus       215 LWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~--~t~tVAWHPk~~LLAyA~d  292 (313)
T KOG1407|consen  215 LWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG--PTFTVAWHPKRPLLAYACD  292 (313)
T ss_pred             ccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC--CceeEEecCCCceeeEEec
Confidence            99999999999999999999999999999999999999999999999999888776554  5689999999999999887


Q ss_pred             CC
Q 038577          455 DS  456 (860)
Q Consensus       455 ~~  456 (860)
                      |.
T Consensus       293 dk  294 (313)
T KOG1407|consen  293 DK  294 (313)
T ss_pred             CC
Confidence            65

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.2e-27  Score=229.44  Aligned_cols=278  Identities=19%  Similarity=0.315  Sum_probs=231.7

Q ss_pred             ccCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q 038577          349 YFDVNCLAYSPDSQL-LATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR  427 (860)
Q Consensus       349 ~~~v~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~  427 (860)
                      ...|.+++|+|...+ +|+.+. -.+.+|+..+......+......+.++.|..||+.+++|+..|.|++||+.+...++
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR  104 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR  104 (487)
T ss_pred             cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH
Confidence            456999999996543 444433 589999998888888888888999999999999999999999999999966644445


Q ss_pred             EeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEEc
Q 038577          428 TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTN-ATLASSSWDKTVRLWNV  506 (860)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~  506 (860)
                      .+. .+..++....|+|+++.+++.+.|+..+++||+.+......+.+|...|.+.+|+|.. ..++|||+||.|++||+
T Consensus       105 ~~~-ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt  183 (487)
T KOG0310|consen  105 QLY-AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT  183 (487)
T ss_pred             HHh-hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence            444 4455889999999888887777777699999999998877899999999999999964 57899999999999999


Q ss_pred             cCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCce-eEEEecccccCCCccccccccccccCCCCcEE
Q 038577          507 FEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGEL-MYTIEGRRDISGGRLMTDRRSAANSSSGKCFT  585 (860)
Q Consensus       507 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  585 (860)
                      +..........|..+|.++.+-|.|..+++++. ..|+|||+.+|.. +..+..|.                    +.|+
T Consensus       184 R~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~--------------------KtVT  242 (487)
T KOG0310|consen  184 RSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHN--------------------KTVT  242 (487)
T ss_pred             ccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhccc--------------------ceEE
Confidence            988656666789999999999999999999974 4699999986654 44444354                    3599


Q ss_pred             EEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeecccccccceeeeccCCCCCCCCCCccccCCCCCccccccccccC
Q 038577          586 TLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRG  665 (860)
Q Consensus       586 ~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  665 (860)
                      |+++..+++.|++++-|+.|++||+.+-+.+..+..                                            
T Consensus       243 cL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~--------------------------------------------  278 (487)
T KOG0310|consen  243 CLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY--------------------------------------------  278 (487)
T ss_pred             EEEeecCCceEeecccccceEEEEccceEEEEeeec--------------------------------------------
Confidence            999999999999999999999999888777654431                                            


Q ss_pred             ccccCCCCCCCCCCCCccceeEEEECCCCCeEEEeccccEEEEe
Q 038577          666 KLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYS  709 (860)
Q Consensus       666 ~~~~~~~g~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~i~~  709 (860)
                                      ..|+.+++.|||++.+++|-++|.....
T Consensus       279 ----------------~~pvLsiavs~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  279 ----------------PGPVLSIAVSPDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             ----------------ccceeeEEecCCCceEEEecccceeeee
Confidence                            2378999999999999999999987543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=2.9e-28  Score=225.79  Aligned_cols=315  Identities=16%  Similarity=0.219  Sum_probs=245.9

Q ss_pred             ccCeEEEEeecCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCC---CeEE
Q 038577           82 HCHVVLHRVRFKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDS---NYLL  157 (860)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~---~~l~  157 (860)
                      ...+.+..+.|...|.++...  +++|.+| .||.+++||..+..        ...+.||.++|.+++|--..   ..++
T Consensus        94 ~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~--------~~~~~Ght~~ik~v~~v~~n~~~~~fv  163 (423)
T KOG0313|consen   94 TAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS--------IKTIVGHTGPIKSVAWVIKNSSSCLFV  163 (423)
T ss_pred             CCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCce--------EEEEecCCcceeeeEEEecCCccceEE
Confidence            345566666688889998888  6788888 89999999998764        68899999999988884332   4699


Q ss_pred             EeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCC
Q 038577          158 VGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDS  237 (860)
Q Consensus       158 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~  237 (860)
                      +++.|.++++|..+.+....  .....-.||...|.++...+++.     ++++++.|.++.+|+.............. 
T Consensus       164 sas~Dqtl~Lw~~~~~~~~~--~~~~~~~GHk~~V~sVsv~~sgt-----r~~SgS~D~~lkiWs~~~~~~~~~E~~s~-  235 (423)
T KOG0313|consen  164 SASMDQTLRLWKWNVGENKV--KALKVCRGHKRSVDSVSVDSSGT-----RFCSGSWDTMLKIWSVETDEEDELESSSN-  235 (423)
T ss_pred             EecCCceEEEEEecCchhhh--hHHhHhcccccceeEEEecCCCC-----eEEeecccceeeecccCCCccccccccch-
Confidence            99999999999998772111  12233449999999999999999     99999999999999943322211111000 


Q ss_pred             CCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeC
Q 038577          238 EPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNEL  317 (860)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  317 (860)
                        ............-.......+.+|..+|.++.|++ ...+++++.|.+|+.||+.++.....+... ..+.++..+|.
T Consensus       236 --~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~  311 (423)
T KOG0313|consen  236 --RRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPL  311 (423)
T ss_pred             --hhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccc
Confidence              00000000000001112455778999999999998 678999999999999999999988877655 48999999998


Q ss_pred             CCEEEEEEccCCcEEEEEccCce---EEEEecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCe-eEEEeecCCC
Q 038577          318 GNWLVFGCAKLGQLLVWEWRSES---YILKQQGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSSGF-CFVTFTEHTN  392 (860)
Q Consensus       318 ~~~l~~~~~~~g~i~v~d~~~~~---~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~  392 (860)
                      .+.+++++++ ..+++||.+++.   ....+.+|...|.++.|+|.. .+|++|+.|+++++||+++.+ ++..+.+|..
T Consensus       312 ~~Ll~~gssd-r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D  390 (423)
T KOG0313|consen  312 SKLLASGSSD-RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND  390 (423)
T ss_pred             cceeeecCCC-CceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc
Confidence            8888888776 999999998763   456678999999999999965 467889999999999999877 8999999999


Q ss_pred             ceEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 038577          393 AVTALHFMANNHSLLSASLDGTVRAWDL  420 (860)
Q Consensus       393 ~v~~i~~~~~~~~l~s~~~dg~i~~wd~  420 (860)
                      .|.++.|.. +..+++||.|.+++++.-
T Consensus       391 Kvl~vdW~~-~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  391 KVLSVDWNE-GGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             eEEEEeccC-CceEEeccCcceEEEecc
Confidence            999999974 558999999999999864

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.5e-28  Score=246.37  Aligned_cols=275  Identities=18%  Similarity=0.240  Sum_probs=229.9

Q ss_pred             EEEeCCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee--cCCc
Q 038577           18 AVLSQNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR--FKYP   95 (860)
Q Consensus        18 ~~~sdg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~--~~~~   95 (860)
                      +.+|..+.||++.+..|++|+..+++...+...+...|+++.|+++|.+||+|..+|.|.|||..+.+.++.+.  |...
T Consensus       183 ldWss~n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~r  262 (484)
T KOG0305|consen  183 LDWSSANVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASR  262 (484)
T ss_pred             hhcccCCeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCce
Confidence            55665668999999999999999999776665558999999999999999999999999999999999888887  6889


Q ss_pred             eeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccc
Q 038577           96 VNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKL  174 (860)
Q Consensus        96 v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~  174 (860)
                      |.+++|.  +..+.+| .++.|..+|+...+..      ...+.+|...|..++|++|++++|+|+.|+.+.|||.... 
T Consensus       263 vg~laW~--~~~lssGsr~~~I~~~dvR~~~~~------~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~-  333 (484)
T KOG0305|consen  263 VGSLAWN--SSVLSSGSRDGKILNHDVRISQHV------VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP-  333 (484)
T ss_pred             eEEEecc--CceEEEecCCCcEEEEEEecchhh------hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc-
Confidence            9999998  6677777 8999999999987752      3348899999999999999999999999999999999666 


Q ss_pred             cCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEc--CCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeE
Q 038577          175 KGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIA--RDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKW  252 (860)
Q Consensus       175 ~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~--~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (860)
                           .....+..|.+.|..++|+|-...    .|++|+  .|+.|++|+..                            
T Consensus       334 -----~p~~~~~~H~aAVKA~awcP~q~~----lLAsGGGs~D~~i~fwn~~----------------------------  376 (484)
T KOG0305|consen  334 -----EPKFTFTEHTAAVKALAWCPWQSG----LLATGGGSADRCIKFWNTN----------------------------  376 (484)
T ss_pred             -----cccEEEeccceeeeEeeeCCCccC----ceEEcCCCcccEEEEEEcC----------------------------
Confidence                 678899999999999999997663    666665  24555555544                            


Q ss_pred             EeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEc-cCCcE
Q 038577          253 GLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQL  331 (860)
Q Consensus       253 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-~~g~i  331 (860)
                                                                ++..+..+.. ...|..+.|++..+-++++.+ .++.|
T Consensus       377 ------------------------------------------~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i  413 (484)
T KOG0305|consen  377 ------------------------------------------TGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQI  413 (484)
T ss_pred             ------------------------------------------CCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcE
Confidence                                                      4444443322 236777778877766655543 35789


Q ss_pred             EEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 038577          332 LVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSG  381 (860)
Q Consensus       332 ~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  381 (860)
                      .||++.+.+.+..+.+|...|..++++|||..+++|+.|.++++|++-..
T Consensus       414 ~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  414 TLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             EEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            99999999999999999999999999999999999999999999998654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=9.1e-30  Score=238.24  Aligned_cols=286  Identities=21%  Similarity=0.339  Sum_probs=247.3

Q ss_pred             eEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce--EEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 038577          298 CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES--YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKV  375 (860)
Q Consensus       298 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  375 (860)
                      ....+..|.+.+..+.|-++...+++++.+ ..|.+|+...++  .+..+.+..+.|+++.|.++++.+++++.|+.+++
T Consensus       167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~D-r~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~  245 (459)
T KOG0288|consen  167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSD-RIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL  245 (459)
T ss_pred             hhhhhhccccccceeEEccCcchhhhcchh-hhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence            344556778889999999999999999887 999999987776  56666778889999999999999999999999999


Q ss_pred             EECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecC
Q 038577          376 WTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLD  455 (860)
Q Consensus       376 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  455 (860)
                      |++.+.+...++.+|.+.|+++.|......+++|+.|.+++.||+.+..+.+++....  .+..++.+  ...+++|..|
T Consensus       246 Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S--~cnDI~~~--~~~~~SgH~D  321 (459)
T KOG0288|consen  246 WNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS--QCNDIVCS--ISDVISGHFD  321 (459)
T ss_pred             eeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccc--cccceEec--ceeeeecccc
Confidence            9999999999999999999999998877779999999999999999988877765443  33444444  5567778888


Q ss_pred             CCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcc----cCCCeEEEEEeeCC
Q 038577          456 SFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFP----HTHDVLTVVYRPDG  531 (860)
Q Consensus       456 ~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~~  531 (860)
                      + .|++||.++.........+. .|+++..++++..+.+++.|.++.+.|+++.+....+..    .....+.+.|||++
T Consensus       322 k-kvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~  399 (459)
T KOG0288|consen  322 K-KVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDG  399 (459)
T ss_pred             c-ceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCC
Confidence            8 89999999999999988765 999999999999999999999999999998875444432    34458999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEE
Q 038577          532 RQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMY  608 (860)
Q Consensus       532 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw  608 (860)
                      .|+++|+.||.|+||++.++++...+......                  ..|++++|+|.|.+|++++.++.+.+|
T Consensus       400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~------------------~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN------------------AAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             ceeeeccCCCcEEEEEccCceEEEEeccCCCC------------------cceEEEEEcCCCchhhcccCCcceEec
Confidence            99999999999999999999999888765531                  259999999999999999999999999

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=2.7e-28  Score=257.49  Aligned_cols=289  Identities=20%  Similarity=0.279  Sum_probs=248.5

Q ss_pred             CCCCceEEEEecCCCCEEEEEE--cCCeEEEEECCC------------ceeEEEEeecCceeEEEEEeeCCCEEEEEEcc
Q 038577          262 QAPSKVTACDYHRGLDMVVVGF--SNGVFGLYQMPD------------FVCIHLLSISREKITTAVFNELGNWLVFGCAK  327 (860)
Q Consensus       262 ~~~~~v~~~~~~~~~~~l~~~~--~~g~i~~~~~~~------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~  327 (860)
                      .+...|.++..+|++..+++|+  .||.+++|+...            .+.+.....|.+.+.|+.|+|||+++++++.+
T Consensus        11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD   90 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD   90 (942)
T ss_pred             cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence            3455699999999999999999  899999998752            23445677788999999999999999999776


Q ss_pred             CCcEEEEEccC------------------ceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeec
Q 038577          328 LGQLLVWEWRS------------------ESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTE  389 (860)
Q Consensus       328 ~g~i~v~d~~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  389 (860)
                       ..|.||+...                  -+....+.+|...|..++|+|++.++++++.|++|.+||..+.+.+..+.+
T Consensus        91 -~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~  169 (942)
T KOG0973|consen   91 -RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG  169 (942)
T ss_pred             -ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeec
Confidence             9999998772                  125667789999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCC-----CCcEEEEEECCCCCEEEEEecC---CCeEEE
Q 038577          390 HTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPS-----SRQFVSLASDQSGEVICAGTLD---SFEIFV  461 (860)
Q Consensus       390 ~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~---~~~i~v  461 (860)
                      |.+.|..+.|.|-|+++++-+.|++|++|++.+....+.+..+.     ...+..+.|||||.+|++...-   ...+.|
T Consensus       170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I  249 (942)
T KOG0973|consen  170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI  249 (942)
T ss_pred             ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence            99999999999999999999999999999988877776665443     3457789999999999986542   238899


Q ss_pred             EECCCCceEEEecCcccCeEEEEEcCC-----CC------------EEEEEeCCCcEEEEEccCCcceeEEc-ccCCCeE
Q 038577          462 WSMKTGRLLDILSGHEGPVHGLVFSPT-----NA------------TLASSSWDKTVRLWNVFEGKGSVESF-PHTHDVL  523 (860)
Q Consensus       462 ~d~~~~~~~~~~~~h~~~v~~l~~s~~-----~~------------~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~  523 (860)
                      .+..+.+.-..+-||.+++.++.|+|.     .+            .+|+|+.|++|.||.....+++.... -....|.
T Consensus       250 ieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~  329 (942)
T KOG0973|consen  250 IERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIV  329 (942)
T ss_pred             EecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCcee
Confidence            999888988999999999999999982     11            68899999999999987766554444 3677899


Q ss_pred             EEEEeeCCCEEEEEeCCCeEEEEeCCCC
Q 038577          524 TVVYRPDGRQLACSTLDGQIHFWDPLNG  551 (860)
Q Consensus       524 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~  551 (860)
                      .++|+|||..|++++.||+|.++.+...
T Consensus       330 DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  330 DMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             eeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence            9999999999999999999999987653

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=4.2e-28  Score=243.27  Aligned_cols=277  Identities=21%  Similarity=0.334  Sum_probs=242.5

Q ss_pred             EEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeec
Q 038577          310 TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTE  389 (860)
Q Consensus       310 ~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  389 (860)
                      .-+.|+ ..+.++++.+  ..+++|+..++........+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+
T Consensus       181 nlldWs-s~n~laValg--~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~  257 (484)
T KOG0305|consen  181 NLLDWS-SANVLAVALG--QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG  257 (484)
T ss_pred             hHhhcc-cCCeEEEEec--ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC
Confidence            345666 4456666654  5899999999886665555588999999999999999999999999999999999999998


Q ss_pred             -CCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCc
Q 038577          390 -HTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGR  468 (860)
Q Consensus       390 -~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~  468 (860)
                       |...|.+++|.  +..+.+|+.|+.|..+|++..+........+...++.+.+++|+.++|.|+.|+ .+.|||....+
T Consensus       258 ~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN-~~~Iwd~~~~~  334 (484)
T KOG0305|consen  258 SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDN-VVFIWDGLSPE  334 (484)
T ss_pred             CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCcc-ceEeccCCCcc
Confidence             99999999998  558999999999999999987766665556777899999999999999999999 99999998889


Q ss_pred             eEEEecCcccCeEEEEEcC-CCCEEEEEe--CCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEe--CCCeE
Q 038577          469 LLDILSGHEGPVHGLVFSP-TNATLASSS--WDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACST--LDGQI  543 (860)
Q Consensus       469 ~~~~~~~h~~~v~~l~~s~-~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i  543 (860)
                      +...+..|...|..++|+| ...+||+|+  .|++|++||..++. ..........|.++.|++..+-|+++.  .++.|
T Consensus       335 p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~-~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i  413 (484)
T KOG0305|consen  335 PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA-RIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQI  413 (484)
T ss_pred             ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc-EecccccCCceeeEEEcCCCCEEEEecCCCCCcE
Confidence            9999999999999999999 467888875  59999999999887 555566778899999999988777753  46679


Q ss_pred             EEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCc
Q 038577          544 HFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQ  613 (860)
Q Consensus       544 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~  613 (860)
                      .||+..+.+++..+.+|..                    +|..+++||||..+++|+.|.++++|++-..
T Consensus       414 ~lw~~ps~~~~~~l~gH~~--------------------RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  414 TLWKYPSMKLVAELLGHTS--------------------RVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             EEEeccccceeeeecCCcc--------------------eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            9999999999999999986                    5999999999999999999999999998764

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=5.2e-28  Score=255.29  Aligned_cols=294  Identities=21%  Similarity=0.260  Sum_probs=243.2

Q ss_pred             CCc-cCeeEEEEcCCCCEEEEEc--CCCcEEEEEccc------------CeEEEEee-cCCceeEEEECCCCCEEEEE-e
Q 038577           50 ESS-SNICRIAVSPDGTFLLTVD--ENQRCHFINLHC------------HVVLHRVR-FKYPVNAILFSPNGKYIAVG-T  112 (860)
Q Consensus        50 ~h~-~~v~~va~spdg~~la~~~--~d~~i~vwd~~~------------~~~~~~~~-~~~~v~~~~fspdg~~la~~-~  112 (860)
                      +|. ..|.+++++|||..+|+|+  .|+.+.||+.+.            .+.+.... |.+.|+|+.|+|||++||+| .
T Consensus        10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD   89 (942)
T KOG0973|consen   10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD   89 (942)
T ss_pred             ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence            444 5689999999999999999  789999997652            12233333 89999999999999999999 6


Q ss_pred             CCeEEEEeCCC-----------CCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCccccc
Q 038577          113 GKLVQIWRSPG-----------FKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNK  181 (860)
Q Consensus       113 ~~~i~iwd~~~-----------~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~  181 (860)
                      |+.|.||....           +....+.++....+.+|.+.|..++|+|++.+|++++.|++|.+|+..+.      ..
T Consensus        90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF------~~  163 (942)
T KOG0973|consen   90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF------EL  163 (942)
T ss_pred             cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc------ee
Confidence            78889999872           34455678899999999999999999999999999999999999999988      67


Q ss_pred             ceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeec--c
Q 038577          182 PFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKD--D  259 (860)
Q Consensus       182 ~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  259 (860)
                      ...+.+|.+.|..+.|.|-|+     ++++-+.|+++++|++..                          |.+.+..  .
T Consensus       164 ~~vl~~H~s~VKGvs~DP~Gk-----y~ASqsdDrtikvwrt~d--------------------------w~i~k~It~p  212 (942)
T KOG0973|consen  164 LKVLRGHQSLVKGVSWDPIGK-----YFASQSDDRTLKVWRTSD--------------------------WGIEKSITKP  212 (942)
T ss_pred             eeeeecccccccceEECCccC-----eeeeecCCceEEEEEccc--------------------------ceeeEeeccc
Confidence            899999999999999999999     999999999999998653                          3332211  1


Q ss_pred             c--cCCCCceEEEEecCCCCEEEEEEc----CCeEEEEECCCceeEEEEeecCceeEEEEEeeC--------CC------
Q 038577          260 F--SQAPSKVTACDYHRGLDMVVVGFS----NGVFGLYQMPDFVCIHLLSISREKITTAVFNEL--------GN------  319 (860)
Q Consensus       260 ~--~~~~~~v~~~~~~~~~~~l~~~~~----~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--------~~------  319 (860)
                      +  .........+.|+|||.+|++...    -..+.|.+-.+.+.-..+-+|..++.+++|+|.        |.      
T Consensus       213 f~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~  292 (942)
T KOG0973|consen  213 FEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNC  292 (942)
T ss_pred             hhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCc
Confidence            1  123446788999999999997543    357888998888889999999999999999972        11      


Q ss_pred             --EEEEEEccCCcEEEEEccCceEEEEec-CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 038577          320 --WLVFGCAKLGQLLVWEWRSESYILKQQ-GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS  380 (860)
Q Consensus       320 --~l~~~~~~~g~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  380 (860)
                        .+++.++.|+.|.||.....+++.... -....|..++|+|||-.|++++.||+|.++.++.
T Consensus       293 ~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  293 YYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             ceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence              267777778999999987777665542 2456799999999999999999999999998864

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=9e-28  Score=226.25  Aligned_cols=282  Identities=23%  Similarity=0.349  Sum_probs=252.0

Q ss_pred             CcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEE
Q 038577          190 DSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTA  269 (860)
Q Consensus       190 ~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  269 (860)
                      ..+.++...+...     .+++|+.|..+.++|...++.                            ...+.+|...|+.
T Consensus       220 pgi~ald~~~s~~-----~ilTGG~d~~av~~d~~s~q~----------------------------l~~~~Gh~kki~~  266 (506)
T KOG0289|consen  220 PGITALDIIPSSS-----KILTGGEDKTAVLFDKPSNQI----------------------------LATLKGHTKKITS  266 (506)
T ss_pred             CCeeEEeecCCCC-----cceecCCCCceEEEecchhhh----------------------------hhhccCcceEEEE
Confidence            4567777777655     899999999999999887532                            4667899999999


Q ss_pred             EEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecC--
Q 038577          270 CDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQG--  347 (860)
Q Consensus       270 ~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~--  347 (860)
                      +.++|+...+++++.|-.|++|.............|..+|+.+..+|.|+|++.++.+ ++..+.|++++..+.....  
T Consensus       267 v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d-~~w~Fsd~~~g~~lt~vs~~~  345 (506)
T KOG0289|consen  267 VKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASND-GTWAFSDISSGSQLTVVSDET  345 (506)
T ss_pred             EEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCC-ceEEEEEccCCcEEEEEeecc
Confidence            9999999999999999999999999998889999999999999999999999999776 9999999999998877643  


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q 038577          348 HYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR  427 (860)
Q Consensus       348 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~  427 (860)
                      ..-.+++.+|+|||..|.+|..||.+++||+.++..+..|.+|.++|..+.|+.+|-+|++++.|+.|++||+++.+..+
T Consensus       346 s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~k  425 (506)
T KOG0289|consen  346 SDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFK  425 (506)
T ss_pred             ccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccc
Confidence            23458999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECC--CCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038577          428 TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK--TGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN  505 (860)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~--~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  505 (860)
                      ++..+....+.++.|++.|.++++++.+= +|++++-.  +...+..+..|.+..+++.|....+++++++.|..++++.
T Consensus       426 t~~l~~~~~v~s~~fD~SGt~L~~~g~~l-~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a  504 (506)
T KOG0289|consen  426 TIQLDEKKEVNSLSFDQSGTYLGIAGSDL-QVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYA  504 (506)
T ss_pred             eeeccccccceeEEEcCCCCeEEeeccee-EEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEee
Confidence            99999888999999999999999996654 55555533  5567778888999999999999999999999999998876


Q ss_pred             c
Q 038577          506 V  506 (860)
Q Consensus       506 ~  506 (860)
                      +
T Consensus       505 ~  505 (506)
T KOG0289|consen  505 L  505 (506)
T ss_pred             c
Confidence            4

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=1.1e-27  Score=251.24  Aligned_cols=281  Identities=26%  Similarity=0.447  Sum_probs=248.5

Q ss_pred             cCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEE-ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCee
Q 038577          305 SREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILK-QQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFC  383 (860)
Q Consensus       305 ~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  383 (860)
                      +...+.+..|.  +..++++.. +++|.+||..++..+.. +.+|.+.|.++++...+..+++|+.|.++++||..+|.+
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~-~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C  283 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSD-DSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC  283 (537)
T ss_pred             Ccchhhhheee--cCeEEecCC-CceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence            34566677776  445555544 49999999999998888 899999999999998888999999999999999999999


Q ss_pred             EEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEE
Q 038577          384 FVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWS  463 (860)
Q Consensus       384 ~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d  463 (860)
                      ...+.+|.+.|.++...+.  .+++|+.|.+|++|++.++..+..+.. +...|.++..+  +.++++|+.|+ .|.+||
T Consensus       284 ~~~l~gh~stv~~~~~~~~--~~~sgs~D~tVkVW~v~n~~~l~l~~~-h~~~V~~v~~~--~~~lvsgs~d~-~v~VW~  357 (537)
T KOG0274|consen  284 THSLQGHTSSVRCLTIDPF--LLVSGSRDNTVKVWDVTNGACLNLLRG-HTGPVNCVQLD--EPLLVSGSYDG-TVKVWD  357 (537)
T ss_pred             EEEecCCCceEEEEEccCc--eEeeccCCceEEEEeccCcceEEEecc-ccccEEEEEec--CCEEEEEecCc-eEEEEE
Confidence            9999999999999987644  788899999999999999999999887 67789999988  89999999999 999999


Q ss_pred             CCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCC-cceeEEcccCCCeEEEEEeeCCCEEEEEeCCCe
Q 038577          464 MKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEG-KGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQ  542 (860)
Q Consensus       464 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  542 (860)
                      ..++++++.+.+|.+.|.++.+.+. ..+++|+.|++|++||+.+. ++...+..|..-+..+.+  .+++|++++.|++
T Consensus       358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~  434 (537)
T KOG0274|consen  358 PRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT  434 (537)
T ss_pred             hhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecccccc
Confidence            9999999999999999999988654 89999999999999999999 777778888888866655  6789999999999


Q ss_pred             EEEEeCCCCceeEEEecc-cccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEE
Q 038577          543 IHFWDPLNGELMYTIEGR-RDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRF  619 (860)
Q Consensus       543 i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~  619 (860)
                      |++||..+++++.++.++ ..                    .|+.+++.  ...+++++.||.+.+||++++++++.+
T Consensus       435 Ik~WD~~~~~~~~~~~~~~~~--------------------~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  435 IKLWDAEEGECLRTLEGRHVG--------------------GVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             EEEeecccCceeeeeccCCcc--------------------cEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence            999999999999999984 22                    47888875  578889999999999999999998866

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=1.1e-27  Score=225.65  Aligned_cols=282  Identities=20%  Similarity=0.283  Sum_probs=245.7

Q ss_pred             ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 038577          307 EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVT  386 (860)
Q Consensus       307 ~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  386 (860)
                      ..+.++...+....+++++. |..+.++|...++.+..+.+|...|+.+.++|+...+++++.|-.|++|..........
T Consensus       220 pgi~ald~~~s~~~ilTGG~-d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~  298 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGE-DKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS  298 (506)
T ss_pred             CCeeEEeecCCCCcceecCC-CCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence            35667777777555665554 48999999999999999999999999999999999999999999999999988888888


Q ss_pred             eecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCC-CCCcEEEEEECCCCCEEEEEecCCCeEEEEECC
Q 038577          387 FTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTP-SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK  465 (860)
Q Consensus       387 ~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~  465 (860)
                      ...|..+|+.+..+|.|.||++++.|++..+.|++++..+...... ....+++.+|+|||..+.+|..|+ .+++||+.
T Consensus       299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~-~vkiwdlk  377 (506)
T KOG0289|consen  299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDG-VVKIWDLK  377 (506)
T ss_pred             cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCc-eEEEEEcC
Confidence            8899999999999999999999999999999999999988877764 556789999999999999999999 99999999


Q ss_pred             CCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc-ccCCCeEEEEEeeCCCEEEEEeCCCeEE
Q 038577          466 TGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF-PHTHDVLTVVYRPDGRQLACSTLDGQIH  544 (860)
Q Consensus       466 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~  544 (860)
                      ++..+..|.+|.++|..++|+.+|-|||+++.|+.|++||++..+....+. ....++.++.|.+.|.+|+.++.|=+|+
T Consensus       378 s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy  457 (506)
T KOG0289|consen  378 SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVY  457 (506)
T ss_pred             CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEE
Confidence            999999999999999999999999999999999999999999887444443 3444799999999999999998876677


Q ss_pred             EEeCC--CCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEEC
Q 038577          545 FWDPL--NGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV  610 (860)
Q Consensus       545 iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~  610 (860)
                      +++-.  +...+..+..|..                    ..+.+.|....+++++++.|..++++.+
T Consensus       458 ~~~k~~k~W~~~~~~~~~sg--------------------~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  458 ICKKKTKSWTEIKELADHSG--------------------LSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             EEecccccceeeehhhhccc--------------------ccceeeecccceEEeeccchhheEEeec
Confidence            76633  4455666665553                    3689999999999999999999888765

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=4.6e-28  Score=217.94  Aligned_cols=297  Identities=18%  Similarity=0.266  Sum_probs=242.2

Q ss_pred             EEeecCCceeEEEECCCCCEEEEE-eCCeEEEEeCCC------------CCcccceeEEEEEeeccCCCeEEEEEcCCCC
Q 038577           88 HRVRFKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPG------------FKKEVFAFELIRTLADCNDKVTALNWSPDSN  154 (860)
Q Consensus        88 ~~~~~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~------------~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~  154 (860)
                      ....|+.++++.+|||||.++|+| .|..|+|.|++.            +. .....++++++..|.+.|+++.|.|...
T Consensus       107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~-~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGD-TQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCC-cccCCceEeehhhccCcccceeecchhh
Confidence            334499999999999999999999 899999999871            11 1112357899999999999999999999


Q ss_pred             eEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCcccc
Q 038577          155 YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETM  234 (860)
Q Consensus       155 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~  234 (860)
                      .|++++.|++|+++|+.... .   ...........+|.++.|+|.|.     +|+.+.+..++++||+++-++      
T Consensus       186 ILiS~srD~tvKlFDfsK~s-a---KrA~K~~qd~~~vrsiSfHPsGe-----fllvgTdHp~~rlYdv~T~Qc------  250 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTS-A---KRAFKVFQDTEPVRSISFHPSGE-----FLLVGTDHPTLRLYDVNTYQC------  250 (430)
T ss_pred             eEEeccCCCeEEEEecccHH-H---HHHHHHhhccceeeeEeecCCCc-----eEEEecCCCceeEEeccceeE------
Confidence            99999999999999998651 1   12233334567899999999999     999999999999999998543      


Q ss_pred             CCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEee--cCceeEEE
Q 038577          235 EDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSI--SREKITTA  312 (860)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~--~~~~i~~~  312 (860)
                                         +.....-.+|.+.|+++.+++.+++.++++.||.|++||--+++++.++..  ....|.+.
T Consensus       251 -------------------fvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa  311 (430)
T KOG0640|consen  251 -------------------FVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSA  311 (430)
T ss_pred             -------------------eeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeE
Confidence                               112234456888999999999999999999999999999989999887754  33479999


Q ss_pred             EEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcc-----cCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeeEEE
Q 038577          313 VFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHY-----FDVNCLAYSPDSQLLATGAD-DNKVKVWTVSSGFCFVT  386 (860)
Q Consensus       313 ~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~  386 (860)
                      .|..+|+++++++.+ ..+++|++.+++.+..+.+..     ..-+...|+....+++.-.. .+.+.-||.++...+..
T Consensus       312 ~Ftkn~kyiLsSG~D-S~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l  390 (430)
T KOG0640|consen  312 VFTKNGKYILSSGKD-STVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL  390 (430)
T ss_pred             EEccCCeEEeecCCc-ceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh
Confidence            999999999988776 999999999999998875431     11234457777777766543 57899999988766554


Q ss_pred             e-ecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 038577          387 F-TEHTNAVTALHFMANNHSLLSASLDGTVRAWDL  420 (860)
Q Consensus       387 ~-~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~  420 (860)
                      + .+|++++..+.-+|.+..+++++.|..+++|--
T Consensus       391 ~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  391 LSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             cccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence            3 479999999999999999999999999999964

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=6.7e-29  Score=232.45  Aligned_cols=282  Identities=20%  Similarity=0.320  Sum_probs=247.6

Q ss_pred             ccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCce--eEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEE
Q 038577          258 DDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFV--CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWE  335 (860)
Q Consensus       258 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d  335 (860)
                      ..+..|.+.+..+.|-++...|++|+.|..|.+|+....+  .+.++.+..+.|+.+.|.++++.+++++.+ +.+++|+
T Consensus       169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d-~~~r~Wn  247 (459)
T KOG0288|consen  169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASND-KNLRLWN  247 (459)
T ss_pred             hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCC-Cceeeee
Confidence            3455688899999999999999999999999999987665  667788888899999999999999988776 9999999


Q ss_pred             ccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcE
Q 038577          336 WRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTV  415 (860)
Q Consensus       336 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i  415 (860)
                      ....+...++.+|...|+++.|......+++|+.|.+|+.||+....+..++. ..+.+.+|+.+  ...++++-.|++|
T Consensus       248 vd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~Dkkv  324 (459)
T KOG0288|consen  248 VDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKV  324 (459)
T ss_pred             ccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccce
Confidence            99999999999999999999999888779999999999999999988887764 34456666665  4468899999999


Q ss_pred             EEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCc----ccCeEEEEEcCCCCE
Q 038577          416 RAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGH----EGPVHGLVFSPTNAT  491 (860)
Q Consensus       416 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h----~~~v~~l~~s~~~~~  491 (860)
                      ++||.++.......+...  .++++..+++|..+.+.+.|+ .+.++|+++.+....+...    ....+.+.|||++.|
T Consensus       325 RfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDd-tl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Y  401 (459)
T KOG0288|consen  325 RFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDD-TLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSY  401 (459)
T ss_pred             EEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCC-ceeeeecccccEEEEeeccccccccccceeEECCCCce
Confidence            999999999888877665  899999999999999999999 9999999999888877542    234888999999999


Q ss_pred             EEEEeCCCcEEEEEccCCcceeEEcccCC--CeEEEEEeeCCCEEEEEeCCCeEEEE
Q 038577          492 LASSSWDKTVRLWNVFEGKGSVESFPHTH--DVLTVVYRPDGRQLACSTLDGQIHFW  546 (860)
Q Consensus       492 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~iw  546 (860)
                      +++||.||.|+||++.+++..........  .|++++|+|.|..|++++.++.+.+|
T Consensus       402 vaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  402 VAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             eeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            99999999999999999987666654333  59999999999999999999999999

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=6.2e-26  Score=234.17  Aligned_cols=460  Identities=19%  Similarity=0.233  Sum_probs=333.1

Q ss_pred             cccccccCCcEEEe-CCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCC---EEEEEcCCCcEEEEEccc
Q 038577            8 LLGAPYRGGNAVLS-QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGT---FLLTVDENQRCHFINLHC   83 (860)
Q Consensus         8 ~~g~~~~~~~~~~s-dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~---~la~~~~d~~i~vwd~~~   83 (860)
                      +.|..+.-....|| |+++++...++.|.||...|+.+...+.+|...++.+.+.|...   ++.+++.+|.|++||...
T Consensus        12 lgg~n~~~~~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~   91 (792)
T KOG1963|consen   12 LGGRNGNKSPAVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSD   91 (792)
T ss_pred             eccccceecccccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCC
Confidence            44545555678899 99999999999999999999999999999999999999988654   667899999999999999


Q ss_pred             CeEEEEeecCCcee-----------------------------------------------------------EEEECCC
Q 038577           84 HVVLHRVRFKYPVN-----------------------------------------------------------AILFSPN  104 (860)
Q Consensus        84 ~~~~~~~~~~~~v~-----------------------------------------------------------~~~fspd  104 (860)
                      +..+..+....++.                                                           ++.+++.
T Consensus        92 ~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~  171 (792)
T KOG1963|consen   92 GELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNS  171 (792)
T ss_pred             cEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCC
Confidence            98887766333222                                                           3334444


Q ss_pred             CCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecc-cccCcccccce
Q 038577          105 GKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKE-KLKGIHTNKPF  183 (860)
Q Consensus       105 g~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~-~~~~~~~~~~~  183 (860)
                      |.+.+......+.+|+.+.+.....   ....-..|.-.+++.++||.++++|++..||.|.+|.--. ....   ....
T Consensus       172 ge~~~i~~~~~~~~~~v~~~~~~~~---~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~---~t~t  245 (792)
T KOG1963|consen  172 GEFKGIVHMCKIHIYFVPKHTKHTS---SRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS---ETCT  245 (792)
T ss_pred             ceEEEEEEeeeEEEEEecccceeec---cchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc---ccce
Confidence            5555555566677777766431110   1112234666789999999999999999999999997554 2122   4567


Q ss_pred             EeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCC
Q 038577          184 LLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQA  263 (860)
Q Consensus       184 ~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (860)
                      .+.-|.+.|.++.|+++|.     +|++|+..|.+.+|.++++.                             +..++.-
T Consensus       246 ~lHWH~~~V~~L~fS~~G~-----~LlSGG~E~VLv~Wq~~T~~-----------------------------kqfLPRL  291 (792)
T KOG1963|consen  246 LLHWHHDEVNSLSFSSDGA-----YLLSGGREGVLVLWQLETGK-----------------------------KQFLPRL  291 (792)
T ss_pred             EEEecccccceeEEecCCc-----eEeecccceEEEEEeecCCC-----------------------------ccccccc
Confidence            8889999999999999999     99999999999999999853                             4566677


Q ss_pred             CCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeec-----------CceeEEEEEeeCCCEEEEEEccCCcEE
Q 038577          264 PSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSIS-----------REKITTAVFNELGNWLVFGCAKLGQLL  332 (860)
Q Consensus       264 ~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~-----------~~~i~~~~~s~~~~~l~~~~~~~g~i~  332 (860)
                      .+.|..+.++||++..++...|+.|.+....+.+...++++-           .+-.+.++++|.-+.++..+.. |.|.
T Consensus       292 gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~-g~vQ  370 (792)
T KOG1963|consen  292 GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHP-GHVQ  370 (792)
T ss_pred             CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCC-ceEE
Confidence            889999999999999999999999999998776655544432           2335678888855555555554 9999


Q ss_pred             EEEccCceEEEEec-----------CcccCeEEEEEcCCCCEEEEEeC--------C--CcEEEEECCCCeeEE-----E
Q 038577          333 VWEWRSESYILKQQ-----------GHYFDVNCLAYSPDSQLLATGAD--------D--NKVKVWTVSSGFCFV-----T  386 (860)
Q Consensus       333 v~d~~~~~~~~~~~-----------~~~~~v~~~~~s~~~~~l~~~~~--------d--g~i~iwd~~~~~~~~-----~  386 (860)
                      +||+.+.+.+.++.           .+.-.+++++.+..|.+++|+-.        |  -.+++|-......-.     .
T Consensus       371 ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I  450 (792)
T KOG1963|consen  371 FYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKI  450 (792)
T ss_pred             EEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEE
Confidence            99998887766552           12234677888888999988642        2  357888765443222     2


Q ss_pred             eecCCCceEEEEEeeCC--CEEEEEeCCCcEEEEEcccccee---------eEeeCCCCCcEEEEEECCCCCEEEEEecC
Q 038577          387 FTEHTNAVTALHFMANN--HSLLSASLDGTVRAWDLFRYRNF---------RTFTTPSSRQFVSLASDQSGEVICAGTLD  455 (860)
Q Consensus       387 ~~~~~~~v~~i~~~~~~--~~l~s~~~dg~i~~wd~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  455 (860)
                      ...|...+...++.+..  ...++++.||.+++|-+...+.+         ..+..-+..++.+.+|+.||..++++..+
T Consensus       451 ~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~  530 (792)
T KOG1963|consen  451 NNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDD  530 (792)
T ss_pred             ecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCC
Confidence            24587777777765432  37899999999999998433221         11222345678899999999988888776


Q ss_pred             CCeEEEEECCC-CceEEEecCcccCeEEEEEcCCC--CEEEEEeCCCcEEEEEccCCc
Q 038577          456 SFEIFVWSMKT-GRLLDILSGHEGPVHGLVFSPTN--ATLASSSWDKTVRLWNVFEGK  510 (860)
Q Consensus       456 ~~~i~v~d~~~-~~~~~~~~~h~~~v~~l~~s~~~--~~l~s~~~dg~i~iwd~~~~~  510 (860)
                        .|.+||..+ .++.........++..+.+....  ...+.....+.+.+|++.+..
T Consensus       531 --~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~  586 (792)
T KOG1963|consen  531 --TITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMS  586 (792)
T ss_pred             --EEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEehHhhhhhh
Confidence              899999988 44444433333444444443211  122333446789999987765

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.2e-28  Score=242.12  Aligned_cols=361  Identities=19%  Similarity=0.278  Sum_probs=277.6

Q ss_pred             EEEEc-CCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeec
Q 038577          146 ALNWS-PDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFS  224 (860)
Q Consensus       146 ~l~~s-~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~  224 (860)
                      .+..+ |.+++|++||.||.|++|+...............+..|.+.|..+....+++     .|++++.|-+|++|+..
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~-----tlIS~SsDtTVK~W~~~  103 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK-----TLISASSDTTVKVWNAH  103 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC-----ceEEecCCceEEEeecc
Confidence            34443 4567899999999999999987622111123677889999999999999998     89999999999999987


Q ss_pred             CCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEe-cCCCCEEEEEEcCCeEEEEECCCcee--E--
Q 038577          225 GNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDY-HRGLDMVVVGFSNGVFGLYQMPDFVC--I--  299 (860)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~~g~i~~~~~~~~~~--~--  299 (860)
                      .+..                       |   ....+..|...|.|+++ .++...+|+|+-|+.|.+||+.++..  +  
T Consensus       104 ~~~~-----------------------~---c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s  157 (735)
T KOG0308|consen  104 KDNT-----------------------F---CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVAS  157 (735)
T ss_pred             cCcc-----------------------h---hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhh
Confidence            6421                       1   24556779999999999 88899999999999999999987632  1  


Q ss_pred             ------EEEe-ecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCc
Q 038577          300 ------HLLS-ISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNK  372 (860)
Q Consensus       300 ------~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  372 (860)
                            ..+. ++...+.+++-++.|..++.++.+ +.+++||.++++.+.++++|...|.++..++||..+++++.||+
T Consensus       158 ~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte-k~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt  236 (735)
T KOG0308|consen  158 FNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE-KDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT  236 (735)
T ss_pred             ccccccccCCCCCccceeeeecCCcceEEEecCcc-cceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce
Confidence                  2223 567789999999999777666665 99999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEE
Q 038577          373 VKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAG  452 (860)
Q Consensus       373 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  452 (860)
                      |++||+...+++.++..|...|+++..+|+-..+++|+.||.|..-|+++.... ++......++..+..+...+-+-++
T Consensus       237 IrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~-tlick~daPv~~l~~~~~~~~~Wvt  315 (735)
T KOG0308|consen  237 IRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKS-TLICKEDAPVLKLHLHEHDNSVWVT  315 (735)
T ss_pred             EEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhh-eEeecCCCchhhhhhccccCCceee
Confidence            999999999999999999999999999999999999999999999999885322 2223333456666666555555666


Q ss_pred             ecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCC
Q 038577          453 TLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGR  532 (860)
Q Consensus       453 ~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~  532 (860)
                      +.++ .|.-|-..-.               ..+++.+++.. -+.|......+....  .........++..-++-.|.+
T Consensus       316 Ttds-~I~rW~~~~~---------------~~l~~s~~~~~-~~T~~~~~~~~~~~t--p~~vi~Gg~ai~k~~mL~dkR  376 (735)
T KOG0308|consen  316 TTDS-SIKRWKLEPD---------------IALSVSGDLDF-FSTDSNNHSCDLTNT--PDSVIPGGAAIKKHAMLNDKR  376 (735)
T ss_pred             eccc-cceecCCccc---------------cccccCCCCCc-ccccCCCccccccCC--CceeccCchhhhhhhhhcCcc
Confidence            7776 7777765421               14445555444 223444444443221  122233445566666777999


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeEEEe
Q 038577          533 QLACSTLDGQIHFWDPLNGELMYTIE  558 (860)
Q Consensus       533 ~l~~~~~dg~i~iwd~~~~~~~~~~~  558 (860)
                      ++++-...|.+.+||+-.+..+..+.
T Consensus       377 hVlTkDa~gnv~lwDIl~~~~~~d~g  402 (735)
T KOG0308|consen  377 HVLTKDAKGNVALWDILACVKVEDFG  402 (735)
T ss_pred             eEeeecCCCCEEEEEeeeeeehhhcc
Confidence            99999999999999998777766554

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.96  E-value=2.2e-26  Score=226.77  Aligned_cols=529  Identities=19%  Similarity=0.235  Sum_probs=324.0

Q ss_pred             CCCEEEee---eCCeEEEEECCC-C---cEEeeccCCccCeeEEEEcC-CCCEEEEEcCCCcEEEEEcccCeEEEE----
Q 038577           22 QNTKLISP---VGNRVSVTDLIK-S---KTVTLPVESSSNICRIAVSP-DGTFLLTVDENQRCHFINLHCHVVLHR----   89 (860)
Q Consensus        22 dg~~l~~~---~~~~i~v~d~~~-~---~~~~~~~~h~~~v~~va~sp-dg~~la~~~~d~~i~vwd~~~~~~~~~----   89 (860)
                      .+.++|+-   .|+.+-|.-+.. |   +...++.+|...|+.+.||| +..+||+++.|..|+||.+..|..-..    
T Consensus        42 S~~flAFn~e~~G~~lgvlPl~~~Gr~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape  121 (1012)
T KOG1445|consen   42 SADFLAFNIEGEGGKLGVLPLTAKGRRTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPE  121 (1012)
T ss_pred             ccceEEEeecCCCceEEEEeccccCccccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcc
Confidence            34455553   245666665542 2   22456668999999999999 556899999999999999985422111    


Q ss_pred             --ee-cCCceeEEEECCCC-CEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeE
Q 038577           90 --VR-FKYPVNAILFSPNG-KYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAV  165 (860)
Q Consensus        90 --~~-~~~~v~~~~fspdg-~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v  165 (860)
                        +. ..-.|.++.|+|.. .+++++..+.++|||+.+++.       +..+.+|.+.|.+..|+.||..|++.+.|..|
T Consensus       122 ~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~-------~~el~~h~d~vQSa~WseDG~llatscKdkqi  194 (1012)
T KOG1445|consen  122 IDVGGGNVIVECLRFHPTADGILASGAHGSVYITDISTQKT-------AVELSGHTDKVQSADWSEDGKLLATSCKDKQI  194 (1012)
T ss_pred             eeecCCceEEEEeecccCcCceEEeccCceEEEEEcccCce-------eecccCCchhhhccccccCCceEeeecCCcce
Confidence              11 23468899999954 577788999999999999884       78899999999999999999999999999999


Q ss_pred             EEEeecccccCcccccceEeecCCCcE-EEEEEccCCCCCccceEEEEcCC----ccEEEeeecCCCCCCccccCCCCCC
Q 038577          166 RLFYVKEKLKGIHTNKPFLLLGHRDSV-VGCFFSVDKKTDKVNRIYTIARD----CYMFSWGFSGNDGKIDETMEDSEPP  240 (860)
Q Consensus       166 ~vwd~~~~~~~~~~~~~~~~~~h~~~i-~~~~~~~~~~~~~~~~l~s~~~d----g~i~~w~~~~~~~~~~~~~~~~~~~  240 (860)
                      +|||.....     .......+|.+.- ..+.|..+-.     +|++.+.+    ..+++||...-...           
T Consensus       195 rifDPRa~~-----~piQ~te~H~~~rdsRv~w~Gn~~-----rlisTGF~~~R~reV~~~Dtr~f~~p-----------  253 (1012)
T KOG1445|consen  195 RIFDPRASM-----EPIQTTEGHGGMRDSRVLWAGNWE-----RLISTGFTTKRIREVRAYDTRKFGAP-----------  253 (1012)
T ss_pred             EEeCCccCC-----Cccccccccccchhheeeeccchh-----hhhhcccchhhheeeeeeeccccCCc-----------
Confidence            999988762     3345557776542 3467776666     77777765    56888987642110           


Q ss_pred             CCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEE-EEEcCCeEEEEECCC------------------------
Q 038577          241 SPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVV-VGFSNGVFGLYQMPD------------------------  295 (860)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~g~i~~~~~~~------------------------  295 (860)
                                     ...........|.--.|.||.++++ +|-.+..+..+.+.+                        
T Consensus       254 ---------------~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tle~~~~GA~lvp  318 (1012)
T KOG1445|consen  254 ---------------VHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTLEEQTLGATLVP  318 (1012)
T ss_pred             ---------------ceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcchhhhccceecc
Confidence                           0000000111122223333333322 222223333332210                        


Q ss_pred             -------------------------------------------------------------ceeEEEEe------ec---
Q 038577          296 -------------------------------------------------------------FVCIHLLS------IS---  305 (860)
Q Consensus       296 -------------------------------------------------------------~~~~~~~~------~~---  305 (860)
                                                                                   .+.++...      .|   
T Consensus       319 kral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~  398 (1012)
T KOG1445|consen  319 KRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQKVSLAPAQRSHSPP  398 (1012)
T ss_pred             hhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCccccccccccCchhccCCCC
Confidence                                                                         00000000      00   


Q ss_pred             --------------------------------------------------------------------------------
Q 038577          306 --------------------------------------------------------------------------------  305 (860)
Q Consensus       306 --------------------------------------------------------------------------------  305 (860)
                                                                                                      
T Consensus       399 pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g  478 (1012)
T KOG1445|consen  399 PPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKKEEVRELDYRPYEKENGVHTPNADADSTQG  478 (1012)
T ss_pred             CCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcchhhhhhcccccccccCccCCCcccccccC
Confidence                                                                                            


Q ss_pred             -CceeEEEE------EeeCCCEE--------EEEEcc----------------CCcEEEE---EccCceE----EEEe--
Q 038577          306 -REKITTAV------FNELGNWL--------VFGCAK----------------LGQLLVW---EWRSESY----ILKQ--  345 (860)
Q Consensus       306 -~~~i~~~~------~s~~~~~l--------~~~~~~----------------~g~i~v~---d~~~~~~----~~~~--  345 (860)
                       ..++..+.      .-|...-+        .++-..                ..+-.+.   .++....    +.++  
T Consensus       479 ~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH  558 (1012)
T KOG1445|consen  479 NSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRH  558 (1012)
T ss_pred             CCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCccccccccccccccccceeeccchheee
Confidence             00000000      00000000        000000                0000000   0000000    0011  


Q ss_pred             ----cCcccC----e---------EEEEEcCCCCEEEE--EeCCCcEEEEECCCCee-----EEEeecCCCceEEEEEee
Q 038577          346 ----QGHYFD----V---------NCLAYSPDSQLLAT--GADDNKVKVWTVSSGFC-----FVTFTEHTNAVTALHFMA  401 (860)
Q Consensus       346 ----~~~~~~----v---------~~~~~s~~~~~l~~--~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~i~~~~  401 (860)
                          .+|...    .         .|=-|+.+..++|+  .+..|.|-||+++..-.     +-.+ .....|+++.|.|
T Consensus       559 ~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdP  637 (1012)
T KOG1445|consen  559 VDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDP  637 (1012)
T ss_pred             ccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCC
Confidence                122211    1         11123344555554  45568999999875321     1122 2456799999999


Q ss_pred             -CCCEEEEEeCCCcEEEEEccccceee------EeeCCCCCcEEEEEECCC-CCEEEEEecCCCeEEEEECCCCceEEEe
Q 038577          402 -NNHSLLSASLDGTVRAWDLFRYRNFR------TFTTPSSRQFVSLASDQS-GEVICAGTLDSFEIFVWSMKTGRLLDIL  473 (860)
Q Consensus       402 -~~~~l~s~~~dg~i~~wd~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~i~v~d~~~~~~~~~~  473 (860)
                       |...|+.++.||.|++|.+..+....      .....+...|+++.|+|- ...|++++.|. +|++||+++++....+
T Consensus       638 FD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~-Ti~lWDl~~~~~~~~l  716 (1012)
T KOG1445|consen  638 FDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDS-TIELWDLANAKLYSRL  716 (1012)
T ss_pred             CChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccc-eeeeeehhhhhhhhee
Confidence             56789999999999999997654322      222345568999999995 46777888888 9999999999999999


Q ss_pred             cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc-c-cCCCeEEEEEeeCCCEEEEEeCCC----eEEEEe
Q 038577          474 SGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF-P-HTHDVLTVVYRPDGRQLACSTLDG----QIHFWD  547 (860)
Q Consensus       474 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~-~~~~v~~~~~s~~~~~l~~~~~dg----~i~iwd  547 (860)
                      .+|.+.|.+++|||+|+.+|+.+.||+|++|..++++...... + ....-..+.|.-||+++++.+.|.    .|.+||
T Consensus       717 ~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~  796 (1012)
T KOG1445|consen  717 VGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYD  796 (1012)
T ss_pred             ccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhh
Confidence            9999999999999999999999999999999988876433222 1 223345688999999999887764    488888


Q ss_pred             CCCCc--eeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCC-EEEEecCCCeEEEEECCCce
Q 038577          548 PLNGE--LMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGS-YILAGGSSKYICMYDVADQV  614 (860)
Q Consensus       548 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~v~vwd~~~~~  614 (860)
                      ..+-.  .+.+.......                   .+.--.+.+|.. .+++|-.|..|.+|.+....
T Consensus       797 Aq~l~~~pl~t~~lDvap-------------------s~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es  847 (1012)
T KOG1445|consen  797 AQTLDLRPLYTQVLDVAP-------------------SPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES  847 (1012)
T ss_pred             hhhccCCcceeeeecccC-------------------ccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence            76532  33322111100                   012223455655 55677789999999986554

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=8.8e-26  Score=193.83  Aligned_cols=284  Identities=20%  Similarity=0.332  Sum_probs=236.6

Q ss_pred             CCCceEEEEecCCCCEEEEEEcCCeEEEEECCCce---------------eEEEEeecCceeEEEEEeeCCCEEEEEEcc
Q 038577          263 APSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFV---------------CIHLLSISREKITTAVFNELGNWLVFGCAK  327 (860)
Q Consensus       263 ~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~---------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~  327 (860)
                      ....|.+++|+|.|.+.++|+...++++...+...               ....-+.|.+.|.+.+|+|+|+.+++++.+
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd  110 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND  110 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence            44579999999999999999999999998665211               112234577899999999999999988765


Q ss_pred             CCcEEEEEccCceE-----EEEecCcccCeEEEEEcCC----CCEEEEEeC-CCcEEEEECCCCeeEEEeecCCCceEEE
Q 038577          328 LGQLLVWEWRSESY-----ILKQQGHYFDVNCLAYSPD----SQLLATGAD-DNKVKVWTVSSGFCFVTFTEHTNAVTAL  397 (860)
Q Consensus       328 ~g~i~v~d~~~~~~-----~~~~~~~~~~v~~~~~s~~----~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i  397 (860)
                       .+|++.-......     -..+.-|.+.|+.++|-.+    +..|++++. |..|++-|..+|.....+.+|.+.|.++
T Consensus       111 -k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal  189 (350)
T KOG0641|consen  111 -KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL  189 (350)
T ss_pred             -ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE
Confidence             8898876554332     2345678999999999653    456776654 6678888888999999999999999887


Q ss_pred             EEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCC------CCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEE
Q 038577          398 HFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPS------SRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLD  471 (860)
Q Consensus       398 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~  471 (860)
                       ++-++-.+++|+.|.+|++||++-..++.++....      ...+.+++++|.|+++++|..|. .-.+||++.+++++
T Consensus       190 -yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds-sc~lydirg~r~iq  267 (350)
T KOG0641|consen  190 -YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS-SCMLYDIRGGRMIQ  267 (350)
T ss_pred             -EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC-ceEEEEeeCCceee
Confidence             34567799999999999999999888888776432      34688999999999999999999 99999999999999


Q ss_pred             EecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCc----ceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEe
Q 038577          472 ILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGK----GSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWD  547 (860)
Q Consensus       472 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  547 (860)
                      .+..|...|.++.|||...++.+++.|..|++-|+...-    .+.....|...+..+.|+|..--+++.+.|.++.+|-
T Consensus       268 ~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa  347 (350)
T KOG0641|consen  268 RFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWA  347 (350)
T ss_pred             eeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEec
Confidence            999999999999999999999999999999999986532    2344457999999999999998899999999999997


Q ss_pred             CC
Q 038577          548 PL  549 (860)
Q Consensus       548 ~~  549 (860)
                      ++
T Consensus       348 ~~  349 (350)
T KOG0641|consen  348 LN  349 (350)
T ss_pred             cC
Confidence            64

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.1e-27  Score=214.26  Aligned_cols=339  Identities=17%  Similarity=0.248  Sum_probs=258.3

Q ss_pred             eEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEE
Q 038577          131 FELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIY  210 (860)
Q Consensus       131 ~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~  210 (860)
                      +.+++.+.||.+.|+.++-......+.+++.|.+.+||.++++      .+.....||.+.|+++.|++.+.     .++
T Consensus       138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg------~CL~~Y~GH~GSVNsikfh~s~~-----L~l  206 (481)
T KOG0300|consen  138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG------ACLATYTGHTGSVNSIKFHNSGL-----LLL  206 (481)
T ss_pred             EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccc------cceeeecccccceeeEEeccccc-----eEE
Confidence            3467889999999999998887789999999999999999999      78999999999999999999998     999


Q ss_pred             EEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEE
Q 038577          211 TIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGL  290 (860)
Q Consensus       211 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~  290 (860)
                      +++.|++..+|...-.                         |.......-..|.+.- ....+ |               
T Consensus       207 TaSGD~taHIW~~av~-------------------------~~vP~~~a~~~hSsEe-E~e~s-D---------------  244 (481)
T KOG0300|consen  207 TASGDETAHIWKAAVN-------------------------WEVPSNNAPSDHSSEE-EEEHS-D---------------  244 (481)
T ss_pred             EccCCcchHHHHHhhc-------------------------CcCCCCCCCCCCCchh-hhhcc-c---------------
Confidence            9999999999974421                         1111100000000000 00000 0               


Q ss_pred             EECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCC
Q 038577          291 YQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADD  370 (860)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  370 (860)
                                    ...+-+.-....||          .+|+       .++..+.+|...|.+..|...|+.+++++.|
T Consensus       245 --------------e~~~d~d~~~~sD~----------~tiR-------vPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWD  293 (481)
T KOG0300|consen  245 --------------EHNRDTDSSEKSDG----------HTIR-------VPLMRLTGHRAVVSACDWLAGGQQMVTASWD  293 (481)
T ss_pred             --------------ccccccccccccCC----------ceee-------eeeeeeeccccceEehhhhcCcceeeeeecc
Confidence                          00000000000111          1222       3456678999999999999999999999999


Q ss_pred             CcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEE
Q 038577          371 NKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVIC  450 (860)
Q Consensus       371 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  450 (860)
                      .+..+||++++..+..+.+|....+.++-+|..+.+++++.|.+.++||++..                           
T Consensus       294 RTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea---------------------------  346 (481)
T KOG0300|consen  294 RTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA---------------------------  346 (481)
T ss_pred             ccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh---------------------------
Confidence            99999999999999999999999999999999999999999999999997421                           


Q ss_pred             EEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeC
Q 038577          451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPD  530 (860)
Q Consensus       451 ~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  530 (860)
                                      -..+..|+||...|++..|.-+. .+++|+.|.+|++||+++.......+...++++.++.+..
T Consensus       347 ----------------I~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g  409 (481)
T KOG0300|consen  347 ----------------IQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKG  409 (481)
T ss_pred             ----------------cceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecC
Confidence                            12345678899999999998654 6899999999999999998877777888899999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCC--CEEEEecCCCeEEEE
Q 038577          531 GRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADG--SYILAGGSSKYICMY  608 (860)
Q Consensus       531 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g--~~l~~~~~dg~v~vw  608 (860)
                      +..++.-.++..|++||++..+ +..++....               -.|...|++++|..+-  .-|++++-|..+.=|
T Consensus       410 ~~iIAiPhDNRqvRlfDlnG~R-laRlPrtsR---------------qgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW  473 (481)
T KOG0300|consen  410 HPIIAIPHDNRQVRLFDLNGNR-LARLPRTSR---------------QGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGW  473 (481)
T ss_pred             CceEEeccCCceEEEEecCCCc-cccCCcccc---------------cccceeeeeeeccccCcccccccccccceeeee
Confidence            8899999999999999996443 333321110               0122358999998654  368899999999999


Q ss_pred             ECCCc
Q 038577          609 DVADQ  613 (860)
Q Consensus       609 d~~~~  613 (860)
                      ++...
T Consensus       474 ~in~p  478 (481)
T KOG0300|consen  474 KINTP  478 (481)
T ss_pred             Eeccc
Confidence            98653

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=3.7e-27  Score=226.91  Aligned_cols=298  Identities=17%  Similarity=0.238  Sum_probs=238.7

Q ss_pred             ccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecc
Q 038577          180 NKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDD  259 (860)
Q Consensus       180 ~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (860)
                      .....+.+|...|.++++.|.|.     ++++|+-|.+|++||+........                   .    .+..
T Consensus       158 shEi~l~hgtk~Vsal~~Dp~Ga-----R~~sGs~Dy~v~~wDf~gMdas~~-------------------~----fr~l  209 (641)
T KOG0772|consen  158 SHEIQLKHGTKIVSALAVDPSGA-----RFVSGSLDYTVKFWDFQGMDASMR-------------------S----FRQL  209 (641)
T ss_pred             cceEeccCCceEEEEeeecCCCc-----eeeeccccceEEEEecccccccch-------------------h----hhcc
Confidence            45678889999999999999999     999999999999999987543110                   1    1223


Q ss_pred             ccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEE------------EeecCceeEEEEEeeCCCEEEEEEcc
Q 038577          260 FSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHL------------LSISREKITTAVFNELGNWLVFGCAK  327 (860)
Q Consensus       260 ~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~------------~~~~~~~i~~~~~s~~~~~l~~~~~~  327 (860)
                      .+.....|.++.|++.|+.+++.+.....+++|-...+....            .++|...+++.+|+|+.+..+.+++.
T Consensus       210 ~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~  289 (641)
T KOG0772|consen  210 QPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY  289 (641)
T ss_pred             CcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecC
Confidence            344556899999999999999999999999999866554443            34566789999999999988888888


Q ss_pred             CCcEEEEEccCceEEEEe------cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---eEEEeecCCC--ceEE
Q 038577          328 LGQLLVWEWRSESYILKQ------QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGF---CFVTFTEHTN--AVTA  396 (860)
Q Consensus       328 ~g~i~v~d~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~--~v~~  396 (860)
                      ||++++||+...+.....      .+..-+++.++|+++|+.||+|+.||.|.+|+..+..   ....-..|..  .|++
T Consensus       290 DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Its  369 (641)
T KOG0772|consen  290 DGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITS  369 (641)
T ss_pred             CCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeE
Confidence            899999998765332221      2344578999999999999999999999999975432   2223346776  8999


Q ss_pred             EEEeeCCCEEEEEeCCCcEEEEEccccceee-Ee-eCCCCCcEEEEEECCCCCEEEEEecC-----CCeEEEEECCCCce
Q 038577          397 LHFMANNHSLLSASLDGTVRAWDLFRYRNFR-TF-TTPSSRQFVSLASDQSGEVICAGTLD-----SFEIFVWSMKTGRL  469 (860)
Q Consensus       397 i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~i~v~d~~~~~~  469 (860)
                      +.|+++|++|++-|.|+++++||++..+..- .. ..+....-+.++|||+.++|++|..-     .+.+++||..+.+.
T Consensus       370 i~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~  449 (641)
T KOG0772|consen  370 ISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT  449 (641)
T ss_pred             EEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceee
Confidence            9999999999999999999999998765332 21 23344456789999999999998652     23799999999999


Q ss_pred             EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038577          470 LDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN  505 (860)
Q Consensus       470 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  505 (860)
                      ++.+.-....|..+.|+|.-+.+..++.||.+++|=
T Consensus       450 v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  450 VYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             EEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence            998887788899999999988888899999999874

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.5e-25  Score=191.05  Aligned_cols=303  Identities=18%  Similarity=0.307  Sum_probs=236.4

Q ss_pred             EEEeecCCceeEEEECCCCCEEEEE-eCCeEEEEeCCC------C-C-cccceeEEEEEeeccCCCeEEEEEcCCCCeEE
Q 038577           87 LHRVRFKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPG------F-K-KEVFAFELIRTLADCNDKVTALNWSPDSNYLL  157 (860)
Q Consensus        87 ~~~~~~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~------~-~-~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~  157 (860)
                      +..+.....|++++|.|.|.+.|+| ...+.+|-..+.      + + ....|..+..+-+.|.+.|.|.+|||+|.+++
T Consensus        26 i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~gelia  105 (350)
T KOG0641|consen   26 INILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIA  105 (350)
T ss_pred             EEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEE
Confidence            3444456789999999999999999 556666654331      1 1 11222334455667899999999999999999


Q ss_pred             EeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEc-CCccEEEeeecCCCCCCccccCC
Q 038577          158 VGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIA-RDCYMFSWGFSGNDGKIDETMED  236 (860)
Q Consensus       158 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~-~dg~i~~w~~~~~~~~~~~~~~~  236 (860)
                      +|+.|.+|++...... ..........+.-|.+.|..++|..+... +...|++++ .|..|++-|...++.        
T Consensus       106 tgsndk~ik~l~fn~d-t~~~~g~dle~nmhdgtirdl~fld~~~s-~~~il~s~gagdc~iy~tdc~~g~~--------  175 (350)
T KOG0641|consen  106 TGSNDKTIKVLPFNAD-TCNATGHDLEFNMHDGTIRDLAFLDDPES-GGAILASAGAGDCKIYITDCGRGQG--------  175 (350)
T ss_pred             ecCCCceEEEEecccc-cccccCcceeeeecCCceeeeEEecCCCc-CceEEEecCCCcceEEEeecCCCCc--------
Confidence            9999999999877765 33333456778889999999999765442 222455544 356666666665533        


Q ss_pred             CCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeec-------Ccee
Q 038577          237 SEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSIS-------REKI  309 (860)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~-------~~~i  309 (860)
                                          -..+.+|.+.|.++ ++-++-++++|+.|.+|++||+.-..++.++...       ...|
T Consensus       176 --------------------~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessav  234 (350)
T KOG0641|consen  176 --------------------FHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAV  234 (350)
T ss_pred             --------------------ceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCccccee
Confidence                                34556777777765 4456789999999999999999887777765432       2578


Q ss_pred             EEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eeEE
Q 038577          310 TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSG----FCFV  385 (860)
Q Consensus       310 ~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~  385 (860)
                      .+++..|.|+.++++..+ ....+||++.++.++.+..|...|+|+.|+|...++++++.|..|++-|++..    -.+.
T Consensus       235 aav~vdpsgrll~sg~~d-ssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~  313 (350)
T KOG0641|consen  235 AAVAVDPSGRLLASGHAD-SSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIM  313 (350)
T ss_pred             EEEEECCCcceeeeccCC-CceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceE
Confidence            999999999999988776 88999999999999999999999999999999999999999999999998632    2344


Q ss_pred             EeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcc
Q 038577          386 TFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLF  421 (860)
Q Consensus       386 ~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~  421 (860)
                      ....|...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus       314 vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  314 VVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             EEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            556799999999999999899999999999999763

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.7e-27  Score=207.17  Aligned_cols=279  Identities=22%  Similarity=0.333  Sum_probs=226.1

Q ss_pred             EEEEecCC-CCEEEEEE-------cCCeEEEEECCCceeEEEEee--cCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc
Q 038577          268 TACDYHRG-LDMVVVGF-------SNGVFGLYQMPDFVCIHLLSI--SREKITTAVFNELGNWLVFGCAKLGQLLVWEWR  337 (860)
Q Consensus       268 ~~~~~~~~-~~~l~~~~-------~~g~i~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~  337 (860)
                      .++.|+|- .++|+++.       .+|.+.|.++...+-+.....  -.+.+..++|++.....+.++..||.+++||+.
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~   91 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT   91 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence            46777773 23444433       358999999965554444332  346789999999988877777777999999965


Q ss_pred             C-ceEEEEecCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeC-CCEEEEEeCCCc
Q 038577          338 S-ESYILKQQGHYFDVNCLAYSPD-SQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMAN-NHSLLSASLDGT  414 (860)
Q Consensus       338 ~-~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~dg~  414 (860)
                      . ..++..++.|..+|.++.|++. +..+++++.|++|++|+...+..+.++.+|...|....|+|. .+.+++++.|+.
T Consensus        92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~  171 (311)
T KOG0277|consen   92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT  171 (311)
T ss_pred             CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence            4 3567777899999999999984 557788899999999999999999999999999999999994 578999999999


Q ss_pred             EEEEEccccceeeEeeCCCCCcEEEEEECCCC-CEEEEEecCCCeEEEEECCCC-ceEEEecCcccCeEEEEEcCC-CCE
Q 038577          415 VRAWDLFRYRNFRTFTTPSSRQFVSLASDQSG-EVICAGTLDSFEIFVWSMKTG-RLLDILSGHEGPVHGLVFSPT-NAT  491 (860)
Q Consensus       415 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~i~v~d~~~~-~~~~~~~~h~~~v~~l~~s~~-~~~  491 (860)
                      +++||++.......+..+. ..+.++.++.-. +.+++|+.|+ .|+.||++.- .++..+.+|.-.|..+.|||. ...
T Consensus       172 l~lwdvr~~gk~~~i~ah~-~Eil~cdw~ky~~~vl~Tg~vd~-~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~l  249 (311)
T KOG0277|consen  172 LRLWDVRSPGKFMSIEAHN-SEILCCDWSKYNHNVLATGGVDN-LVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASL  249 (311)
T ss_pred             EEEEEecCCCceeEEEecc-ceeEeecccccCCcEEEecCCCc-eEEEEehhhccccceeecCCceEEEEEecCcchhhH
Confidence            9999998765544455544 688899988754 5667777777 9999999874 567888999999999999996 467


Q ss_pred             EEEEeCCCcEEEEEccCCcceeEEc-ccCCCeEEEEEee-CCCEEEEEeCCCeEEEEeC
Q 038577          492 LASSSWDKTVRLWNVFEGKGSVESF-PHTHDVLTVVYRP-DGRQLACSTLDGQIHFWDP  548 (860)
Q Consensus       492 l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~  548 (860)
                      ||+++.|=+++|||...+....+.. .|..-+..+.||+ ++.++|+++-|+.++||+.
T Consensus       250 LaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  250 LASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            9999999999999998665444444 5777788899998 6779999999999999984

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.6e-27  Score=243.54  Aligned_cols=251  Identities=20%  Similarity=0.356  Sum_probs=210.5

Q ss_pred             EEEEec-CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--------------------------------C------
Q 038577          341 YILKQQ-GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS--------------------------------G------  381 (860)
Q Consensus       341 ~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~--------------------------------~------  381 (860)
                      ..+.+. .|.+.|.++.||+||++||+|+.||.|+||.+..                                .      
T Consensus       258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS  337 (712)
T ss_pred             EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence            334455 8999999999999999999999999999997644                                0      


Q ss_pred             ----------------------eeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEE
Q 038577          382 ----------------------FCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVS  439 (860)
Q Consensus       382 ----------------------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  439 (860)
                                            +++..+.+|.+.|.++.|+.++ +|++++.|.+|++|++....+++.|...  ..|+|
T Consensus       338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~Hn--dfVTc  414 (712)
T KOG0283|consen  338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSHN--DFVTC  414 (712)
T ss_pred             ccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEecC--CeeEE
Confidence                                  1223456799999999999876 8999999999999999999999998754  48999


Q ss_pred             EEECC-CCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc--
Q 038577          440 LASDQ-SGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF--  516 (860)
Q Consensus       440 ~~~~~-~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--  516 (860)
                      ++|+| |.+++++|+-|+ .++||++...+.+.-...+ .-|++++|+|||+..+.|+.+|.+++|+....+......  
T Consensus       415 VaFnPvDDryFiSGSLD~-KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~  492 (712)
T KOG0283|consen  415 VAFNPVDDRYFISGSLDG-KVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR  492 (712)
T ss_pred             EEecccCCCcEeeccccc-ceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence            99999 678999999999 9999999987777665544 789999999999999999999999999998776433222  


Q ss_pred             c------cCCCeEEEEEeeC-CCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEE
Q 038577          517 P------HTHDVLTVVYRPD-GRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCY  589 (860)
Q Consensus       517 ~------~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  589 (860)
                      .      ....|+.+.|.|. ...+++.+.|..|+|||.++.+++..+++....                  ..-....|
T Consensus       493 ~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~------------------~SQ~~Asf  554 (712)
T KOG0283|consen  493 LHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT------------------SSQISASF  554 (712)
T ss_pred             eccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC------------------CcceeeeE
Confidence            1      1237999999984 346888889999999999999999999987753                  22467789


Q ss_pred             ecCCCEEEEecCCCeEEEEECCCce
Q 038577          590 SADGSYILAGGSSKYICMYDVADQV  614 (860)
Q Consensus       590 s~~g~~l~~~~~dg~v~vwd~~~~~  614 (860)
                      +.||++|+++++|..|++|+.+...
T Consensus       555 s~Dgk~IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  555 SSDGKHIVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             ccCCCEEEEeecCceEEEEeCCCCc
Confidence            9999999999999999999986544

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=4.8e-27  Score=226.10  Aligned_cols=290  Identities=19%  Similarity=0.328  Sum_probs=232.8

Q ss_pred             eeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceE----EEEe-cCcccCeEEEEEcCCCCEEEEEeCCC
Q 038577          297 VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESY----ILKQ-QGHYFDVNCLAYSPDSQLLATGADDN  371 (860)
Q Consensus       297 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~----~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg  371 (860)
                      .....++.+...|.++++.|.|..+++++-+ ..|++||......    ...+ +.....|.+++|++.|..|++.+...
T Consensus       158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~D-y~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a  236 (641)
T KOG0772|consen  158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLD-YTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA  236 (641)
T ss_pred             cceEeccCCceEEEEeeecCCCceeeecccc-ceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence            3445677888899999999999999999877 9999999875422    1122 23445699999999999999999889


Q ss_pred             cEEEEECCCCeeEEE-------------eecCCCceEEEEEeeCC-CEEEEEeCCCcEEEEEccccceeeEee-----CC
Q 038577          372 KVKVWTVSSGFCFVT-------------FTEHTNAVTALHFMANN-HSLLSASLDGTVRAWDLFRYRNFRTFT-----TP  432 (860)
Q Consensus       372 ~i~iwd~~~~~~~~~-------------~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~-----~~  432 (860)
                      ..+++|-. |..+..             -++|...+++.+|+|+. ..+++++.||++++||+.+.+....+.     ..
T Consensus       237 qakl~DRd-G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g  315 (641)
T KOG0772|consen  237 QAKLLDRD-GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG  315 (641)
T ss_pred             ceeEEccC-CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence            99999954 433332             24689999999999976 578999999999999998765433322     23


Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCce---EEEecCccc--CeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 038577          433 SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRL---LDILSGHEG--PVHGLVFSPTNATLASSSWDKTVRLWNVF  507 (860)
Q Consensus       433 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~---~~~~~~h~~--~v~~l~~s~~~~~l~s~~~dg~i~iwd~~  507 (860)
                      ....++.++|+++|+.+|+|+.|| .|++|+..+...   ...-.+|..  .|+++.||+||++|++-+.|+++++||++
T Consensus       316 ~Rv~~tsC~~nrdg~~iAagc~DG-SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr  394 (641)
T KOG0772|consen  316 KRVPVTSCAWNRDGKLIAAGCLDG-SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR  394 (641)
T ss_pred             cccCceeeecCCCcchhhhcccCC-ceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence            345688999999999999999999 999999854322   334457876  89999999999999999999999999998


Q ss_pred             CCcceeEEc---ccCCCeEEEEEeeCCCEEEEEeC------CCeEEEEeCCCCceeEEEecccccCCCcccccccccccc
Q 038577          508 EGKGSVESF---PHTHDVLTVVYRPDGRQLACSTL------DGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANS  578 (860)
Q Consensus       508 ~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  578 (860)
                      ..+......   ....+-+.++|||+.+++++|+.      .|.+.+||..+.+.++.+.....                
T Consensus       395 q~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~a----------------  458 (641)
T KOG0772|consen  395 QFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTA----------------  458 (641)
T ss_pred             ccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCc----------------
Confidence            876443322   34556788999999999999853      57899999999999988876532                


Q ss_pred             CCCCcEEEEEEecCCCEEEEecCCCeEEEEE
Q 038577          579 SSGKCFTTLCYSADGSYILAGGSSKYICMYD  609 (860)
Q Consensus       579 ~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd  609 (860)
                          .|..+.|.|.=+.|++|+.||.+++|=
T Consensus       459 ----Svv~~~WhpkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  459 ----SVVRCLWHPKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             ----eEEEEeecchhhheeeecCCCceEEEE
Confidence                589999999999999999999999874

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.3e-26  Score=209.57  Aligned_cols=303  Identities=17%  Similarity=0.241  Sum_probs=215.2

Q ss_pred             EEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEc
Q 038577          134 IRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIA  213 (860)
Q Consensus       134 ~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~  213 (860)
                      +..+.+|.+.|++++|+.||++||+++.|+.|++|+++.-...........+  .-+..+.+.|+||-+.    .++++-
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv--e~dhpT~V~FapDc~s----~vv~~~  152 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV--EYDHPTRVVFAPDCKS----VVVSVK  152 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc--cCCCceEEEECCCcce----EEEEEc
Confidence            4578899999999999999999999999999999999875111110111111  2235678899999873    555666


Q ss_pred             CCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEEC
Q 038577          214 RDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQM  293 (860)
Q Consensus       214 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~  293 (860)
                      ...++++|.+.....                                  .......+                   -||-
T Consensus       153 ~g~~l~vyk~~K~~d----------------------------------G~~~~~~v-------------------~~D~  179 (420)
T KOG2096|consen  153 RGNKLCVYKLVKKTD----------------------------------GSGSHHFV-------------------HIDN  179 (420)
T ss_pred             cCCEEEEEEeeeccc----------------------------------CCCCcccc-------------------cccc
Confidence            667888887765321                                  00000000                   0110


Q ss_pred             CCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcE
Q 038577          294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKV  373 (860)
Q Consensus       294 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  373 (860)
                           ...-+.|.-.+..+-....+.++++++.+ ..|.+|+++ |+.+..+......-+..+.||+|+++++++-.-.|
T Consensus       180 -----~~f~~kh~v~~i~iGiA~~~k~imsas~d-t~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDV  252 (420)
T KOG2096|consen  180 -----LEFERKHQVDIINIGIAGNAKYIMSASLD-TKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDV  252 (420)
T ss_pred             -----cccchhcccceEEEeecCCceEEEEecCC-CcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCc
Confidence                 00001122233334444455566655554 788888888 77777766656666778999999999999998899


Q ss_pred             EEEECC---CC-----eeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccc-------cceeeEee---CCCCC
Q 038577          374 KVWTVS---SG-----FCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFR-------YRNFRTFT---TPSSR  435 (860)
Q Consensus       374 ~iwd~~---~~-----~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~-------~~~~~~~~---~~~~~  435 (860)
                      ++|.+-   .|     ..+..+.+|.+.|..++|+++...+++.+.||++++||..-       .+.++...   .....
T Consensus       253 kVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~  332 (420)
T KOG2096|consen  253 KVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGS  332 (420)
T ss_pred             eEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCC
Confidence            999863   22     34567889999999999999999999999999999999842       12222221   12233


Q ss_pred             cEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEe-cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038577          436 QFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDIL-SGHEGPVHGLVFSPTNATLASSSWDKTVRLWN  505 (860)
Q Consensus       436 ~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  505 (860)
                      ....++++|.|..|+++...  .+++|..++|+....+ ..|...|.+++|+++|+++++++ |+.++++.
T Consensus       333 ~p~RL~lsP~g~~lA~s~gs--~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  333 EPVRLELSPSGDSLAVSFGS--DLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             CceEEEeCCCCcEEEeecCC--ceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            45689999999999988766  6999999998877665 46899999999999999999998 77788875

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=2e-28  Score=225.26  Aligned_cols=291  Identities=16%  Similarity=0.260  Sum_probs=245.8

Q ss_pred             EEEEEeeccCCCeEEEEEcCCC-CeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEE
Q 038577          132 ELIRTLADCNDKVTALNWSPDS-NYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIY  210 (860)
Q Consensus       132 ~~~~~~~~h~~~v~~l~~s~d~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~  210 (860)
                      +.+..+.||.+.|.|++=.|.. ..+++|+.||.|++||+...      .+...+..|.+.|.++++..  .     .++
T Consensus        57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR------~~~~~f~AH~G~V~Gi~v~~--~-----~~~  123 (433)
T KOG0268|consen   57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR------ECIRTFKAHEGLVRGICVTQ--T-----SFF  123 (433)
T ss_pred             cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhh------hhhheeecccCceeeEEecc--c-----ceE
Confidence            3467789999999999999987 78999999999999999988      77899999999999999987  3     799


Q ss_pred             EEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEE
Q 038577          211 TIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGL  290 (860)
Q Consensus       211 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~  290 (860)
                      +++.|.+|+.|.++....                             .. ....+.+..+.-+..++.+++++.  .|.|
T Consensus       124 tvgdDKtvK~wk~~~~p~-----------------------------~t-ilg~s~~~gIdh~~~~~~FaTcGe--~i~I  171 (433)
T KOG0268|consen  124 TVGDDKTVKQWKIDGPPL-----------------------------HT-ILGKSVYLGIDHHRKNSVFATCGE--QIDI  171 (433)
T ss_pred             EecCCcceeeeeccCCcc-----------------------------ee-eeccccccccccccccccccccCc--eeee
Confidence            999999999998876210                             00 112234555555555666666654  5899


Q ss_pred             EECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCC
Q 038577          291 YQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADD  370 (860)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  370 (860)
                      ||.....++..+.-..+.|.++.|+|....++.++..|+.|.+||++.+.++.+..- ...-+.++|+|.+-.+++|+.|
T Consensus       172 WD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED  250 (433)
T KOG0268|consen  172 WDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANED  250 (433)
T ss_pred             cccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeecccc
Confidence            999999999999999999999999999999998888889999999999988776532 3345689999988889999999


Q ss_pred             CcEEEEECCC-CeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEE
Q 038577          371 NKVKVWTVSS-GFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVI  449 (860)
Q Consensus       371 g~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  449 (860)
                      ..++.||++. ..++....+|.++|.++.|+|.|+-+++|+.|.+|++|..+.+.............+.++.+|.|.+++
T Consensus       251 ~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi  330 (433)
T KOG0268|consen  251 HNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYI  330 (433)
T ss_pred             ccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEE
Confidence            9999999975 356777889999999999999999999999999999999988877666666666789999999999999


Q ss_pred             EEEecCCCeEEEEECCCCce
Q 038577          450 CAGTLDSFEIFVWSMKTGRL  469 (860)
Q Consensus       450 ~~~~~~~~~i~v~d~~~~~~  469 (860)
                      ++|+.|+ .|++|.....+.
T Consensus       331 ~SGSdd~-nvRlWka~Asek  349 (433)
T KOG0268|consen  331 ISGSDDG-NVRLWKAKASEK  349 (433)
T ss_pred             EecCCCc-ceeeeecchhhh
Confidence            9999999 999998765443

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=1.4e-26  Score=242.91  Aligned_cols=281  Identities=28%  Similarity=0.465  Sum_probs=252.1

Q ss_pred             CCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEE-EeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceE
Q 038577          263 APSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHL-LSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESY  341 (860)
Q Consensus       263 ~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~  341 (860)
                      +...+.+..+.  ...+++++.++.|.+|+..++..+.. +.+|.+.+.++++..-+..+++++.+ .++++||..++.+
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D-~t~rvWd~~sg~C  283 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTD-KTERVWDCSTGEC  283 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecC-CcEEeEecCCCcE
Confidence            45667788777  66899999999999999999999888 99999999999999866666666655 9999999999999


Q ss_pred             EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcc
Q 038577          342 ILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLF  421 (860)
Q Consensus       342 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~  421 (860)
                      ...+.+|...|.++...+  ..+++|+.|.+|++|+++++..+..+.+|.++|.++..+  +.++++|+.|++|++||+.
T Consensus       284 ~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~  359 (537)
T KOG0274|consen  284 THSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR  359 (537)
T ss_pred             EEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence            999999999999998754  478889999999999999999999999999999999987  6799999999999999999


Q ss_pred             ccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCC-ceEEEecCcccCeEEEEEcCCCCEEEEEeCCCc
Q 038577          422 RYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTG-RLLDILSGHEGPVHGLVFSPTNATLASSSWDKT  500 (860)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~  500 (860)
                      ++++++.+.. +...|.++.+.+. ..++.|+.|+ .|++||+.+. +++..+.+|..-+.++.+  .+++|++++.|++
T Consensus       360 ~~~cl~sl~g-H~~~V~sl~~~~~-~~~~Sgs~D~-~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~  434 (537)
T KOG0274|consen  360 TGKCLKSLSG-HTGRVYSLIVDSE-NRLLSGSLDT-TIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT  434 (537)
T ss_pred             hceeeeeecC-CcceEEEEEecCc-ceEEeeeecc-ceEeecCCchhhhhhhhcCCccccccccc--ccceeEecccccc
Confidence            9999999988 6678999988776 8899999998 9999999999 999999999999977766  6889999999999


Q ss_pred             EEEEEccCCcceeEEcc-cCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEE
Q 038577          501 VRLWNVFEGKGSVESFP-HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTI  557 (860)
Q Consensus       501 i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  557 (860)
                      |++||..++++...... |...|..+++.  ...+++++.||.+++||+++++....+
T Consensus       435 Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  435 IKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             EEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence            99999999998877777 66888888886  457888999999999999999988766

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=4.3e-27  Score=205.95  Aligned_cols=278  Identities=17%  Similarity=0.254  Sum_probs=217.8

Q ss_pred             eEEEEcC--CCCEEEEE-------cCCCcEEEEEcccCeEEE---EeecCCceeEEEECCCC--CEEEEEeCCeEEEEeC
Q 038577           56 CRIAVSP--DGTFLLTV-------DENQRCHFINLHCHVVLH---RVRFKYPVNAILFSPNG--KYIAVGTGKLVQIWRS  121 (860)
Q Consensus        56 ~~va~sp--dg~~la~~-------~~d~~i~vwd~~~~~~~~---~~~~~~~v~~~~fspdg--~~la~~~~~~i~iwd~  121 (860)
                      .++.|||  +++ ||++       ...|++.|-++..++-+.   .+.....+.+++|++..  ..+++.+||++++||.
T Consensus        12 ysvqfSPf~~nr-LavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~   90 (311)
T KOG0277|consen   12 YSVQFSPFVENR-LAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL   90 (311)
T ss_pred             ceeEecccccch-hheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence            5788998  333 4433       236899999986544444   34467889999999865  4444459999999996


Q ss_pred             CCCCcccceeEEEEEeeccCCCeEEEEEcCC-CCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccC
Q 038577          122 PGFKKEVFAFELIRTLADCNDKVTALNWSPD-SNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVD  200 (860)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~  200 (860)
                      .....      +++.++.|...|.++.|++- ...+++++-|++|++|+...+      ....++.||...|....|+|.
T Consensus        91 ~~~s~------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~------~Sv~Tf~gh~~~Iy~a~~sp~  158 (311)
T KOG0277|consen   91 TMPSK------PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP------NSVQTFNGHNSCIYQAAFSPH  158 (311)
T ss_pred             CCCCc------chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC------cceEeecCCccEEEEEecCCC
Confidence            65443      57889999999999999984 456778899999999999887      668889999999999999997


Q ss_pred             CCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEE
Q 038577          201 KKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVV  280 (860)
Q Consensus       201 ~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  280 (860)
                      ..+    .+++++.|+++++||++...                                                     
T Consensus       159 ~~n----lfas~Sgd~~l~lwdvr~~g-----------------------------------------------------  181 (311)
T KOG0277|consen  159 IPN----LFASASGDGTLRLWDVRSPG-----------------------------------------------------  181 (311)
T ss_pred             CCC----eEEEccCCceEEEEEecCCC-----------------------------------------------------
Confidence            664    88899999999999876521                                                     


Q ss_pred             EEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc-eEEEEecCcccCeEEEEEcC
Q 038577          281 VGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE-SYILKQQGHYFDVNCLAYSP  359 (860)
Q Consensus       281 ~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~-~~~~~~~~~~~~v~~~~~s~  359 (860)
                                      +.+ .+..|...+.++.|+.-...++++++.|+.|+.||++.- .++..+.+|.-.|+.++|||
T Consensus       182 ----------------k~~-~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sp  244 (311)
T KOG0277|consen  182 ----------------KFM-SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSP  244 (311)
T ss_pred             ----------------cee-EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCc
Confidence                            111 134445566777777766666666677789999998764 45677789999999999999


Q ss_pred             C-CCEEEEEeCCCcEEEEECCCC-eeEEEeecCCCceEEEEEee-CCCEEEEEeCCCcEEEEEc
Q 038577          360 D-SQLLATGADDNKVKVWTVSSG-FCFVTFTEHTNAVTALHFMA-NNHSLLSASLDGTVRAWDL  420 (860)
Q Consensus       360 ~-~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~  420 (860)
                      . ...|++++.|-++++||...+ ..+.+...|+.-+..+.|++ ++.++++++.|+.+.+|+.
T Consensus       245 h~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  245 HHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             chhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            6 458899999999999999844 45566777888999999987 4578999999999999984

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=6.1e-26  Score=205.30  Aligned_cols=244  Identities=18%  Similarity=0.276  Sum_probs=213.3

Q ss_pred             EEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCC--EEEEEeCCCcEEEE
Q 038577          299 IHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQ--LLATGADDNKVKVW  376 (860)
Q Consensus       299 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~iw  376 (860)
                      +..+..|...+++++.+  +.++++++.+ -+|+|||++....+..+..|.+.|+++.|.++-.  .|++|+.||.|.+|
T Consensus        36 lF~~~aH~~sitavAVs--~~~~aSGssD-etI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw  112 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAVS--GPYVASGSSD-ETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW  112 (362)
T ss_pred             cccccccccceeEEEec--ceeEeccCCC-CcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence            45567788899999885  6888888776 8999999999999999999999999999999875  89999999999999


Q ss_pred             ECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC
Q 038577          377 TVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS  456 (860)
Q Consensus       377 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  456 (860)
                      +.....++..+++|.+.|+.++++|.++..++.+.|+.++.|++-+++.-.........  ..+.|+|.|.+++++..+ 
T Consensus       113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~a--t~v~w~~~Gd~F~v~~~~-  189 (362)
T KOG0294|consen  113 RVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKA--TLVSWSPQGDHFVVSGRN-  189 (362)
T ss_pred             EcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcc--eeeEEcCCCCEEEEEecc-
Confidence            99999999999999999999999999999999999999999999999877766665543  448999999999999888 


Q ss_pred             CeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEE--eeCCCEE
Q 038577          457 FEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVY--RPDGRQL  534 (860)
Q Consensus       457 ~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l  534 (860)
                       .|-+|.+.+.+....+.. ...+.++.|- ++..|++|+.|+.|.+||..+..+...+.+|...|.++.+  .|++.+|
T Consensus       190 -~i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~l  266 (362)
T KOG0294|consen  190 -KIDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYL  266 (362)
T ss_pred             -EEEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEE
Confidence             599999988777665542 2456677665 6778999999999999999988888888999999999984  3578899


Q ss_pred             EEEeCCCeEEEEeCCCC
Q 038577          535 ACSTLDGQIHFWDPLNG  551 (860)
Q Consensus       535 ~~~~~dg~i~iwd~~~~  551 (860)
                      ++++.||.|++||++..
T Consensus       267 vTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  267 VTASSDGFIKVWDIDME  283 (362)
T ss_pred             EEeccCceEEEEEcccc
Confidence            99999999999999765

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=1.4e-25  Score=235.78  Aligned_cols=247  Identities=18%  Similarity=0.301  Sum_probs=196.0

Q ss_pred             EecCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------eeEEEeecCCCceEEEEEeeCC-CEEEEEeCCCc
Q 038577          344 KQQGHYFDVNCLAYSP-DSQLLATGADDNKVKVWTVSSG-------FCFVTFTEHTNAVTALHFMANN-HSLLSASLDGT  414 (860)
Q Consensus       344 ~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~  414 (860)
                      .+.+|.+.|.+++|+| ++++|++|+.|++|++||+.++       ..+..+.+|...|.+++|+|++ ++|++++.|+.
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            3568999999999999 8899999999999999999764       3567888999999999999985 68999999999


Q ss_pred             EEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccC-eEEEEEcCCCCEEE
Q 038577          415 VRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGP-VHGLVFSPTNATLA  493 (860)
Q Consensus       415 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~-v~~l~~s~~~~~l~  493 (860)
                      |++||+.+++....+.. +...+.+++|+|+|.++++++.|+ .|++||+++++.+..+.+|.+. +..+.|.+++..++
T Consensus       150 VrIWDl~tg~~~~~l~~-h~~~V~sla~spdG~lLatgs~Dg-~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~iv  227 (493)
T PTZ00421        150 VNVWDVERGKAVEVIKC-HSDQITSLEWNLDGSLLCTTSKDK-KLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLII  227 (493)
T ss_pred             EEEEECCCCeEEEEEcC-CCCceEEEEEECCCCEEEEecCCC-EEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEE
Confidence            99999999887776654 445799999999999999999999 9999999999999999999765 45678999888877


Q ss_pred             EEe----CCCcEEEEEccCCcceeEEc--ccCCCeEEEEEeeCCCEEEEEe-CCCeEEEEeCCCCceeEEEecccccCCC
Q 038577          494 SSS----WDKTVRLWNVFEGKGSVESF--PHTHDVLTVVYRPDGRQLACST-LDGQIHFWDPLNGELMYTIEGRRDISGG  566 (860)
Q Consensus       494 s~~----~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~  566 (860)
                      +++    .|+.|++||+++........  .....+....|++++++|++++ .||.|++||+.++++.........    
T Consensus       228 t~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~----  303 (493)
T PTZ00421        228 TLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSV----  303 (493)
T ss_pred             EEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCC----
Confidence            654    47899999998765443332  2344566778999999999887 599999999999987776544321    


Q ss_pred             ccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCc
Q 038577          567 RLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQ  613 (860)
Q Consensus       567 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~  613 (860)
                                     .++..++|.|.-.  +-...--..++|.+...
T Consensus       304 ---------------~~~~g~~~~pk~~--~dv~~~Ei~r~~~l~~~  333 (493)
T PTZ00421        304 ---------------EPHKGLCMMPKWS--LDTRKCEIARFYALTYH  333 (493)
T ss_pred             ---------------CCCcceEeccccc--ccccceeeeEEEEecCC
Confidence                           2467888888432  11111223466666543

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=4.1e-26  Score=205.14  Aligned_cols=270  Identities=19%  Similarity=0.254  Sum_probs=217.6

Q ss_pred             ecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccC-ceEEEE-ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 038577          304 ISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRS-ESYILK-QQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSG  381 (860)
Q Consensus       304 ~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~-~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  381 (860)
                      ...+.|.+++|||....++++++-||+|++|+++. +..+.+ ...|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence            45678999999998777887777779999999987 343332 3578999999999999999999999999999999999


Q ss_pred             eeEEEeecCCCceEEEEEeeCCC--EEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeE
Q 038577          382 FCFVTFTEHTNAVTALHFMANNH--SLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEI  459 (860)
Q Consensus       382 ~~~~~~~~~~~~v~~i~~~~~~~--~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i  459 (860)
                       ....+..|..+|..+.|-+...  .|++|+.|.+|++||.+....+.++..|..  +.+  .+--..+++++..+. .|
T Consensus       105 -Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR--vYa--~Dv~~pm~vVata~r-~i  178 (347)
T KOG0647|consen  105 -QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER--VYA--ADVLYPMAVVATAER-HI  178 (347)
T ss_pred             -CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce--eee--hhccCceeEEEecCC-cE
Confidence             5566778999999999987665  899999999999999999998888887763  333  344456777888887 89


Q ss_pred             EEEECCCCceEEE--ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCc--ceeEEcccC---------CCeEEEE
Q 038577          460 FVWSMKTGRLLDI--LSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGK--GSVESFPHT---------HDVLTVV  526 (860)
Q Consensus       460 ~v~d~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~---------~~v~~~~  526 (860)
                      .+|+++.+.....  -..-.-.+++++..+|....+.|+-+|.+.+..+..+.  ....+.-|.         -.|++++
T Consensus       179 ~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~  258 (347)
T KOG0647|consen  179 AVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA  258 (347)
T ss_pred             EEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence            9999986543221  11223458899999998888999999999999998763  222233232         2478899


Q ss_pred             EeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEe
Q 038577          527 YRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAG  599 (860)
Q Consensus       527 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~  599 (860)
                      |+|.-..|++++.||++.+||-+....+.+.+.+..                    +|++.+|+.+|.+++.+
T Consensus       259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q--------------------pItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ--------------------PITCCSFNRNGSIFAYA  311 (347)
T ss_pred             eecccceEEEecCCceEEEecchhhhhhhccCcCCC--------------------ccceeEecCCCCEEEEE
Confidence            999999999999999999999888877777666654                    69999999999988865

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.7e-27  Score=232.84  Aligned_cols=341  Identities=16%  Similarity=0.246  Sum_probs=275.7

Q ss_pred             CCCCEEEEEEcCCeEEEEECCCce------eEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc--eEEEEe
Q 038577          274 RGLDMVVVGFSNGVFGLYQMPDFV------CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE--SYILKQ  345 (860)
Q Consensus       274 ~~~~~l~~~~~~g~i~~~~~~~~~------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~--~~~~~~  345 (860)
                      |.+++|++|+.||.|++|+.....      .+..++.|.+.+..++...+|+.+++++.+ .+|++|+...+  -+...+
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsD-tTVK~W~~~~~~~~c~sti  113 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSD-TTVKVWNAHKDNTFCMSTI  113 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCC-ceEEEeecccCcchhHhhh
Confidence            566789999999999999986432      356778899999999999999999988876 99999999877  566677


Q ss_pred             cCcccCeEEEEE-cCCCCEEEEEeCCCcEEEEECCCCee--E--------EEee-cCCCceEEEEEeeCCCEEEEEeCCC
Q 038577          346 QGHYFDVNCLAY-SPDSQLLATGADDNKVKVWTVSSGFC--F--------VTFT-EHTNAVTALHFMANNHSLLSASLDG  413 (860)
Q Consensus       346 ~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~--~--------~~~~-~~~~~v~~i~~~~~~~~l~s~~~dg  413 (860)
                      ..|...|.|+++ .++...+|+|+-|+.|.+||++++..  +        ..+. ++..+|.+++.++.|..+++|+..+
T Consensus       114 r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek  193 (735)
T KOG0308|consen  114 RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK  193 (735)
T ss_pred             hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCccc
Confidence            889999999999 88888999999999999999997722  2        2223 6888999999999999999999999


Q ss_pred             cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEE
Q 038577          414 TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLA  493 (860)
Q Consensus       414 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~  493 (860)
                      .+++||.++.+.+..+. .+...|..+..++||+.+++++.|+ +|++||+...+++.++..|...|+++..+|+-..+.
T Consensus       194 ~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDg-tIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vY  271 (735)
T KOG0308|consen  194 DLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDG-TIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVY  271 (735)
T ss_pred             ceEEeccccccceeeee-ccccceEEEEEcCCCCeEeecCCCc-eEEeeeccccceeeeEEeccCceEEEeeCCCcceEE
Confidence            99999999999888888 6667899999999999999999999 999999999999999999999999999999999999


Q ss_pred             EEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCC-----cc
Q 038577          494 SSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGG-----RL  568 (860)
Q Consensus       494 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~  568 (860)
                      +|+.||.|..=|+.+......+.....+|..+..+...+-+-+++.|+.|+-|-..-..   .+....+....     ..
T Consensus       272 sG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~---~l~~s~~~~~~~T~~~~~  348 (735)
T KOG0308|consen  272 SGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI---ALSVSGDLDFFSTDSNNH  348 (735)
T ss_pred             ecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcccc---ccccCCCCCcccccCCCc
Confidence            99999999999999876566666777888888888655555777889999999754222   11111111000     00


Q ss_pred             cccccc--ccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEe
Q 038577          569 MTDRRS--AANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQ  620 (860)
Q Consensus       569 ~~~~~~--~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~  620 (860)
                      ......  ......+.+|..-+.-.|.+++++-...|.+.+||+-....+..|.
T Consensus       349 ~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g  402 (735)
T KOG0308|consen  349 SCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG  402 (735)
T ss_pred             cccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence            000000  0012234456666777789999999999999999998888776665

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=4.1e-26  Score=217.22  Aligned_cols=276  Identities=21%  Similarity=0.381  Sum_probs=231.8

Q ss_pred             EEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEE----EE------------e--cCcccCeEEEEEcCC
Q 038577          299 IHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYI----LK------------Q--QGHYFDVNCLAYSPD  360 (860)
Q Consensus       299 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~----~~------------~--~~~~~~v~~~~~s~~  360 (860)
                      ...+..|..++.+++++|++.+.+.++.+ |+|.-|+..++...    ..            .  ..|...+.+++.++|
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~-g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D  213 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKD-GTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD  213 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCC-cceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence            45666788899999999999999988776 99999998877632    00            1  268888999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEE
Q 038577          361 SQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSL  440 (860)
Q Consensus       361 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  440 (860)
                      |++||+|+.|..|.||+.++.+.+..+.+|.+.|.+++|-.....+++++.|+++++|++.....+.++..+. ..+..+
T Consensus       214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHq-d~v~~I  292 (479)
T KOG0299|consen  214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQ-DGVLGI  292 (479)
T ss_pred             CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCc-cceeee
Confidence            9999999999999999999999999999999999999999888899999999999999998877776665544 478888


Q ss_pred             EECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc-c--
Q 038577          441 ASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF-P--  517 (860)
Q Consensus       441 ~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~--  517 (860)
                      ....-++.+.+|+.|. ++++|++. .+....+.+|.+.+-|++|- +...+++|+.+|.|.+|++...+++.... +  
T Consensus       293 daL~reR~vtVGgrDr-T~rlwKi~-eesqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHg  369 (479)
T KOG0299|consen  293 DALSRERCVTVGGRDR-TVRLWKIP-EESQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHG  369 (479)
T ss_pred             chhcccceEEeccccc-eeEEEecc-ccceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEeecccc
Confidence            8888899999999999 99999994 44556678899999999998 45679999999999999998877654332 1  


Q ss_pred             ---------cCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCC----ceeEEEecccccCCCccccccccccccCCCCcE
Q 038577          518 ---------HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNG----ELMYTIEGRRDISGGRLMTDRRSAANSSSGKCF  584 (860)
Q Consensus       518 ---------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  584 (860)
                               ++..|++++..|...++|+|+.+|.|++|-+.++    +++..+...                     +.|
T Consensus       370 v~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~---------------------GfV  428 (479)
T KOG0299|consen  370 VIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV---------------------GFV  428 (479)
T ss_pred             ccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc---------------------cEE
Confidence                     2237999999999999999999999999999887    333333321                     359


Q ss_pred             EEEEEecCCCEEEEec
Q 038577          585 TTLCYSADGSYILAGG  600 (860)
Q Consensus       585 ~~l~~s~~g~~l~~~~  600 (860)
                      ++++|+++|+++++|-
T Consensus       429 Nsl~f~~sgk~ivagi  444 (479)
T KOG0299|consen  429 NSLAFSNSGKRIVAGI  444 (479)
T ss_pred             EEEEEccCCCEEEEec
Confidence            9999999999777663

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=3.6e-25  Score=233.04  Aligned_cols=244  Identities=14%  Similarity=0.298  Sum_probs=193.5

Q ss_pred             CCcEEEEEccCceEEEEecCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCe--------eEEEeecCCCceEEEE
Q 038577          328 LGQLLVWEWRSESYILKQQGHYFDVNCLAYSPD-SQLLATGADDNKVKVWTVSSGF--------CFVTFTEHTNAVTALH  398 (860)
Q Consensus       328 ~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v~~i~  398 (860)
                      .+.+.+|+......+..+.+|...|.+++|+|+ +.+|++|+.||.|++||+.++.        .+..+.+|...|.+++
T Consensus        53 ~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVa  132 (568)
T PTZ00420         53 IGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIID  132 (568)
T ss_pred             eeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEE
Confidence            478999998888888888999999999999997 7899999999999999997542        3446788999999999


Q ss_pred             EeeCCCE-EEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcc
Q 038577          399 FMANNHS-LLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHE  477 (860)
Q Consensus       399 ~~~~~~~-l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~  477 (860)
                      |+|++.. +++++.|+.|++||+.+++....+..  ...+.+++|+|+|.++++++.|+ .|++||+++++.+..+.+|.
T Consensus       133 f~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~--~~~V~SlswspdG~lLat~s~D~-~IrIwD~Rsg~~i~tl~gH~  209 (568)
T PTZ00420        133 WNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM--PKKLSSLKWNIKGNLLSGTCVGK-HMHIIDPRKQEIASSFHIHD  209 (568)
T ss_pred             ECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec--CCcEEEEEECCCCCEEEEEecCC-EEEEEECCCCcEEEEEeccc
Confidence            9998875 56899999999999999887666643  35789999999999999999888 99999999999999999998


Q ss_pred             cCeEEE-----EEcCCCCEEEEEeCCC----cEEEEEccCCcceeEEcc---cCCCeEEEEEeeCCCEEEEEeCCCeEEE
Q 038577          478 GPVHGL-----VFSPTNATLASSSWDK----TVRLWNVFEGKGSVESFP---HTHDVLTVVYRPDGRQLACSTLDGQIHF  545 (860)
Q Consensus       478 ~~v~~l-----~~s~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~i  545 (860)
                      +.+...     .|++++.++++++.|+    +|++||++..........   +.+.+......++|.++++|..|+.|++
T Consensus       210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~  289 (568)
T PTZ00420        210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY  289 (568)
T ss_pred             CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence            875443     3468889999988774    799999986433333333   2333334444556889999999999999


Q ss_pred             EeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCC
Q 038577          546 WDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADG  593 (860)
Q Consensus       546 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g  593 (860)
                      |++..+.. ..+....                  +..++.+++|.|+.
T Consensus       290 ~e~~~~~~-~~l~~~~------------------s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        290 YQHSLGSI-RKVNEYK------------------SCSPFRSFGFLPKQ  318 (568)
T ss_pred             EEccCCcE-Eeecccc------------------cCCCccceEEcccc
Confidence            99987643 2222211                  12357889999965

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.4e-27  Score=219.78  Aligned_cols=289  Identities=15%  Similarity=0.206  Sum_probs=237.6

Q ss_pred             EEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 038577          300 HLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVS  379 (860)
Q Consensus       300 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  379 (860)
                      ..+.+|.+.|.+++-+|..-..+++++-||.|++||+....+...+..|.+.|..+++..  ..+++++.|.+|+.|.++
T Consensus        60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~  137 (433)
T KOG0268|consen   60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID  137 (433)
T ss_pred             hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc
Confidence            445678889999999998844444444559999999999999999999999999999987  678899999999999986


Q ss_pred             CCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEe-cCCCe
Q 038577          380 SGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGT-LDSFE  458 (860)
Q Consensus       380 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~  458 (860)
                      . ..+.++. ..+.+..+.-+..+..++|+|.  .|.+||.....+++.+..... .+.++.++|-...+++++ .|+ .
T Consensus       138 ~-~p~~til-g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~D-ti~svkfNpvETsILas~~sDr-s  211 (433)
T KOG0268|consen  138 G-PPLHTIL-GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGAD-SISSVKFNPVETSILASCASDR-S  211 (433)
T ss_pred             C-Ccceeee-ccccccccccccccccccccCc--eeeecccccCCccceeecCCC-ceeEEecCCCcchheeeeccCC-c
Confidence            5 3555554 3556777777777778899886  599999998888888877654 688999999887665555 666 9


Q ss_pred             EEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcce-eEEcccCCCeEEEEEeeCCCEEEEE
Q 038577          459 IFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGS-VESFPHTHDVLTVVYRPDGRQLACS  537 (860)
Q Consensus       459 i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~  537 (860)
                      |.+||++++.+++.+. -...-+.|+|+|.+-.++++++|..++.||++..... ....+|.+.|.++.|||.|+-+++|
T Consensus       212 IvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsg  290 (433)
T KOG0268|consen  212 IVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSG  290 (433)
T ss_pred             eEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccc
Confidence            9999999999887765 3455678999998888999999999999999876543 3445799999999999999999999


Q ss_pred             eCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEE
Q 038577          538 TLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLL  616 (860)
Q Consensus       538 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~  616 (860)
                      +.|.+|+||..+.+.........+.                   ..|.++.||.|.+|+++|++|+.|++|.....+.+
T Consensus       291 syDksIRIf~~~~~~SRdiYhtkRM-------------------q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl  350 (433)
T KOG0268|consen  291 SYDKSIRIFPVNHGHSRDIYHTKRM-------------------QHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL  350 (433)
T ss_pred             cccceEEEeecCCCcchhhhhHhhh-------------------heeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence            9999999999988766555444433                   24999999999999999999999999998766544

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=3e-25  Score=233.19  Aligned_cols=252  Identities=14%  Similarity=0.230  Sum_probs=197.7

Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE-------------EEeecCCCceEEEEEee-CCCEEEEEeCCC
Q 038577          348 HYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCF-------------VTFTEHTNAVTALHFMA-NNHSLLSASLDG  413 (860)
Q Consensus       348 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-------------~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg  413 (860)
                      +...|.....++++..+++++.+.....|+...+..+             ..+.+|.+.|.+++|+| ++++|++++.|+
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            3444555666667666666666666666765433222             23678999999999999 788999999999


Q ss_pred             cEEEEEccccc-------eeeEeeCCCCCcEEEEEECCCC-CEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEE
Q 038577          414 TVRAWDLFRYR-------NFRTFTTPSSRQFVSLASDQSG-EVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVF  485 (860)
Q Consensus       414 ~i~~wd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~  485 (860)
                      +|++||+.+..       .+..+. .+...+.+++|+|++ .+|++++.|+ .|++||+++++.+..+.+|...|.+++|
T Consensus        99 tIkIWdi~~~~~~~~~~~~l~~L~-gH~~~V~~l~f~P~~~~iLaSgs~Dg-tVrIWDl~tg~~~~~l~~h~~~V~sla~  176 (493)
T PTZ00421         99 TIMGWGIPEEGLTQNISDPIVHLQ-GHTKKVGIVSFHPSAMNVLASAGADM-VVNVWDVERGKAVEVIKCHSDQITSLEW  176 (493)
T ss_pred             EEEEEecCCCccccccCcceEEec-CCCCcEEEEEeCcCCCCEEEEEeCCC-EEEEEECCCCeEEEEEcCCCCceEEEEE
Confidence            99999997653       233333 455689999999986 6899999998 9999999999999999999999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCC-eEEEEEeeCCCEEEEEe----CCCeEEEEeCCCCce-eEEEec
Q 038577          486 SPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHD-VLTVVYRPDGRQLACST----LDGQIHFWDPLNGEL-MYTIEG  559 (860)
Q Consensus       486 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~~-~~~~~~  559 (860)
                      +|++.+|++++.|++|++||+++++.......|.+. ...+.|.+++..+++++    .|+.|++||+++... +.....
T Consensus       177 spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~  256 (493)
T PTZ00421        177 NLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL  256 (493)
T ss_pred             ECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEecc
Confidence            999999999999999999999999877777777654 45778999888887664    478999999987643 322222


Q ss_pred             ccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEec-CCCeEEEEECCCceEEEEEe
Q 038577          560 RRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGG-SSKYICMYDVADQVLLRRFQ  620 (860)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~-~dg~v~vwd~~~~~~~~~~~  620 (860)
                      +..                   ..+....|++++++|++++ .|+.|++||+.+++++....
T Consensus       257 d~~-------------------~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~  299 (493)
T PTZ00421        257 DQS-------------------SALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS  299 (493)
T ss_pred             CCC-------------------CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence            211                   1366678999999999888 59999999999998776544

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.95  E-value=2.6e-25  Score=220.51  Aligned_cols=406  Identities=16%  Similarity=0.205  Sum_probs=280.0

Q ss_pred             CceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeeccc
Q 038577           94 YPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEK  173 (860)
Q Consensus        94 ~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~  173 (860)
                      ..|..++|-|||..|+.+.++.+.+||.+.|.       +..++.+|.+.|.|++|+.||+.+|+|+.|..|.+|.-.-.
T Consensus        13 hci~d~afkPDGsqL~lAAg~rlliyD~ndG~-------llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE   85 (1081)
T KOG1538|consen   13 HCINDIAFKPDGTQLILAAGSRLLVYDTSDGT-------LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE   85 (1081)
T ss_pred             cchheeEECCCCceEEEecCCEEEEEeCCCcc-------cccccccccceEEEEEEccCCceeccCCCceeEEEeccccc
Confidence            37999999999999999999999999999987       58999999999999999999999999999999999986543


Q ss_pred             ccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEE
Q 038577          174 LKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWG  253 (860)
Q Consensus       174 ~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (860)
                              ...-..|.+.|.++.|.|-..     .|++++-. ..-+|+.+....                         
T Consensus        86 --------G~LkYSH~D~IQCMsFNP~~h-----~LasCsLs-dFglWS~~qK~V-------------------------  126 (1081)
T KOG1538|consen   86 --------GILKYSHNDAIQCMSFNPITH-----QLASCSLS-DFGLWSPEQKSV-------------------------  126 (1081)
T ss_pred             --------ceeeeccCCeeeEeecCchHH-----Hhhhcchh-hccccChhhhhH-------------------------
Confidence                    344567999999999999988     88888743 344565543211                         


Q ss_pred             eeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEe---ecCceeEEEEEeeCC-----CEEEEEE
Q 038577          254 LLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLS---ISREKITTAVFNELG-----NWLVFGC  325 (860)
Q Consensus       254 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~---~~~~~i~~~~~s~~~-----~~l~~~~  325 (860)
                           .-......+.+++|..||++++.|..+|+|.+-+- +++....+.   +...+|.+++|+|..     ..+++..
T Consensus       127 -----~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D  200 (1081)
T KOG1538|consen  127 -----SKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD  200 (1081)
T ss_pred             -----HhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe
Confidence                 11123457899999999999999999999999976 444433333   356789999999864     2333333


Q ss_pred             ccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCE
Q 038577          326 AKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHS  405 (860)
Q Consensus       326 ~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~  405 (860)
                      . +.++.+|.+. |+.+.+-+.-.-...|+.+.++|.+++.|+.|+.+.+|. +.|..+.++......|+.++..|++++
T Consensus       201 W-~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~  277 (1081)
T KOG1538|consen  201 W-GQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQY  277 (1081)
T ss_pred             c-cceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCce
Confidence            2 2555555543 344443344445577999999999999999999999997 568888888888889999999999999


Q ss_pred             EEEEeCCCcEEEEEccccc---------------------------eee-----------------EeeCCCCCcEEEEE
Q 038577          406 LLSASLDGTVRAWDLFRYR---------------------------NFR-----------------TFTTPSSRQFVSLA  441 (860)
Q Consensus       406 l~s~~~dg~i~~wd~~~~~---------------------------~~~-----------------~~~~~~~~~~~~~~  441 (860)
                      ++.|+.||+|..|++....                           ..+                 ....+....+....
T Consensus       278 v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYel~  357 (1081)
T KOG1538|consen  278 VVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYELY  357 (1081)
T ss_pred             EEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecccceEEEEecc
Confidence            9999999999999872110                           000                 00001100000000


Q ss_pred             -----------------------ECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEE--cCCC-CEEEEE
Q 038577          442 -----------------------SDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVF--SPTN-ATLASS  495 (860)
Q Consensus       442 -----------------------~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~--s~~~-~~l~s~  495 (860)
                                             .--.++.++.+. +. .+..+|...-+. +... -.+-|.-+..  -|-| .-|+.|
T Consensus       358 se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVlCq-ek-rLqClDF~Gvk~-ReW~-M~S~iRYikV~GGP~gREgL~vG  433 (1081)
T KOG1538|consen  358 SEDLSDMHYRVKEKIIKKFECSLLVVCANHIVLCQ-EK-RLQCLDFSGVKE-REWQ-MESLIRYIKVIGGPPGREGLLVG  433 (1081)
T ss_pred             ccccccchhHHHHHHHhhccceEEEEEcCeEEEEc-cc-ceeeecccchhh-hhhh-HHHHHHhhhhhcCCCCcceeEEE
Confidence                                   000122222222 22 444455432110 0000 0011111111  1222 347778


Q ss_pred             eCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEec
Q 038577          496 SWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEG  559 (860)
Q Consensus       496 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  559 (860)
                      -.+|.|.-.=+.+.- ..-+......|.++..+...+.||+..+.++..++|+.+++.+..-++
T Consensus       434 lknGqV~kiF~dN~~-PiLl~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL~QEpg  496 (1081)
T KOG1538|consen  434 LKNGQVLKIFVDNLF-PILLLKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELLFQEPG  496 (1081)
T ss_pred             ecCCcEEEEEecCCc-hhheecccceeEEeeccCCcceEEEEccCCeEEEEEccCCceEeecCC
Confidence            888876543333332 233334567899999999999999999999999999999998876655

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.3e-25  Score=203.12  Aligned_cols=295  Identities=16%  Similarity=0.252  Sum_probs=226.5

Q ss_pred             ccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEE----EEeecCceeEEEEEeeCCCEEEEEEccCCcEEE
Q 038577          258 DDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIH----LLSISREKITTAVFNELGNWLVFGCAKLGQLLV  333 (860)
Q Consensus       258 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~----~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v  333 (860)
                      ..+.+|...|++++|+.||+.|++.+.|+.|++|++.+.....    ......+..+.+.|.||.+.+++.......+++
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            4567899999999999999999999999999999998754321    112233477899999999999999888789999


Q ss_pred             EEccCce---EEE---------EecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEee
Q 038577          334 WEWRSES---YIL---------KQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMA  401 (860)
Q Consensus       334 ~d~~~~~---~~~---------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~  401 (860)
                      |.+...+   ...         ..+.|...+..+-...++.+|++++.|..|.+|++. |+.+..+......-+..+.+|
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP  238 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP  238 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence            9764321   111         113456677778888889999999999999999998 999988887777778889999


Q ss_pred             CCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeE
Q 038577          402 NNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVH  481 (860)
Q Consensus       402 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~  481 (860)
                      +|+++++++---.+++|.+                    .|..+|.+                +.-..+..++||...|.
T Consensus       239 ~GRFia~~gFTpDVkVwE~--------------------~f~kdG~f----------------qev~rvf~LkGH~saV~  282 (420)
T KOG2096|consen  239 DGRFIAVSGFTPDVKVWEP--------------------IFTKDGTF----------------QEVKRVFSLKGHQSAVL  282 (420)
T ss_pred             CCcEEEEecCCCCceEEEE--------------------EeccCcch----------------hhhhhhheeccchhhee
Confidence            9999999998888999875                    11122211                11223456789999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEccCCc-------ceeEE----cccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCC
Q 038577          482 GLVFSPTNATLASSSWDKTVRLWNVFEGK-------GSVES----FPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLN  550 (860)
Q Consensus       482 ~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  550 (860)
                      .++|+++.+.+++.+.||++++||++-..       .+...    ....+....+.++|+|+.||.+. ...+++|..++
T Consensus       283 ~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~  361 (420)
T KOG2096|consen  283 AAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASED  361 (420)
T ss_pred             eeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEccc
Confidence            99999999999999999999999974321       11111    12334455899999999988876 45699999999


Q ss_pred             CceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEEC
Q 038577          551 GELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV  610 (860)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~  610 (860)
                      |+....++.-.                   +..|++++|+++|+++++++ |..+++..-
T Consensus       362 g~~~~~~e~~h-------------------~~~Is~is~~~~g~~~atcG-dr~vrv~~n  401 (420)
T KOG2096|consen  362 GKDYPELEDIH-------------------STTISSISYSSDGKYIATCG-DRYVRVIRN  401 (420)
T ss_pred             CccchhHHHhh-------------------cCceeeEEecCCCcEEeeec-ceeeeeecC
Confidence            88776665432                   24699999999999999986 455776653

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=6.4e-26  Score=203.95  Aligned_cols=271  Identities=15%  Similarity=0.245  Sum_probs=225.2

Q ss_pred             CCCCceEEEEecC-CCCEEEEEEcCCeEEEEECCCc-ee-EEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccC
Q 038577          262 QAPSKVTACDYHR-GLDMVVVGFSNGVFGLYQMPDF-VC-IHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRS  338 (860)
Q Consensus       262 ~~~~~v~~~~~~~-~~~~l~~~~~~g~i~~~~~~~~-~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~  338 (860)
                      .....|.+++|+| ...++++|+-||+|++|++... .. ......+.+++.+++|+.||..+++++.+ +.+++||+.+
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~D-k~~k~wDL~S  103 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCD-KQAKLWDLAS  103 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccC-CceEEEEccC
Confidence            3456799999999 5566679999999999999763 32 24455678899999999999988888877 9999999999


Q ss_pred             ceEEEEecCcccCeEEEEEcCCCC--EEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEE
Q 038577          339 ESYILKQQGHYFDVNCLAYSPDSQ--LLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVR  416 (860)
Q Consensus       339 ~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~  416 (860)
                      + ....+..|.++|.++.|-+...  .|+||+.|.+|+.||++...++.++. -.+.+.++..-  ...++.+..++.|.
T Consensus       104 ~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~  179 (347)
T KOG0647|consen  104 G-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVATAERHIA  179 (347)
T ss_pred             C-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEecCCcEE
Confidence            9 4556678999999999988766  89999999999999999888888775 45667766654  34788888999999


Q ss_pred             EEEcccc-ceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCC--ceEEEecCccc---------CeEEEE
Q 038577          417 AWDLFRY-RNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTG--RLLDILSGHEG---------PVHGLV  484 (860)
Q Consensus       417 ~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~--~~~~~~~~h~~---------~v~~l~  484 (860)
                      +|+++.+ ...+....+...++.+++.-++....+.|+-+| .+.+..+..+  +.-..++.|..         .|++|+
T Consensus       180 vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG-rv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~  258 (347)
T KOG0647|consen  180 VYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEG-RVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA  258 (347)
T ss_pred             EEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecc-eEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence            9999664 445556667777889999999988889999998 9999988876  44455666652         578899


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEe
Q 038577          485 FSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACST  538 (860)
Q Consensus       485 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  538 (860)
                      |+|....|+|++.||+..+||-.....+.....|..+|++..|+.+|.++|-+.
T Consensus       259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             eecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence            999999999999999999999888777777788999999999999999887763

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=4.9e-26  Score=216.68  Aligned_cols=305  Identities=17%  Similarity=0.275  Sum_probs=245.6

Q ss_pred             ceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceee-eEEeeeeccc
Q 038577          182 PFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVK-KWGLLRKDDF  260 (860)
Q Consensus       182 ~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  260 (860)
                      ......|.-++.+++++|+++     +.++++.+|+|.-|++.++.........+ ..         .+ ......... 
T Consensus       135 ~~~~~~H~~s~~~vals~d~~-----~~fsask~g~i~kw~v~tgk~~~~i~~~~-ev---------~k~~~~~~k~~r-  198 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDK-----RVFSASKDGTILKWDVLTGKKDRYIIERD-EV---------LKSHGNPLKESR-  198 (479)
T ss_pred             ceeeccccCcceEEEeecccc-----ceeecCCCcceeeeehhcCcccccccccc-hh---------hhhccCCCCccc-
Confidence            466778999999999999999     99999999999999998875421111110 00         00 000000111 


Q ss_pred             cCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce
Q 038577          261 SQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES  340 (860)
Q Consensus       261 ~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~  340 (860)
                      ..|...+.+++.++||++|++|..|..|.||+..+.+.++.+.+|.+.|.+++|-.....+++++.+ ..+++|+++...
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~D-rsvkvw~~~~~s  277 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASAD-RSVKVWSIDQLS  277 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecC-CceEEEehhHhH
Confidence            3788899999999999999999999999999999999999999999999999999988888888776 999999999999


Q ss_pred             EEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 038577          341 YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDL  420 (860)
Q Consensus       341 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~  420 (860)
                      .+.++.+|...|..+....-++.+-+|+.|+++++|++.. .....+.+|.+.+-|++|-.+. .+++|+.+|.|.+|++
T Consensus       278 ~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~-HfvsGSdnG~IaLWs~  355 (479)
T KOG0299|consen  278 YVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDE-HFVSGSDNGSIALWSL  355 (479)
T ss_pred             HHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEeccc-ceeeccCCceEEEeee
Confidence            9999999999999999998888888888999999999954 3444677889999999997654 8999999999999999


Q ss_pred             cccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCc
Q 038577          421 FRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKT  500 (860)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~  500 (860)
                      .+.+++.....++...       |+.                        ... .+...|++++..|...++|+|+.+|.
T Consensus       356 ~KKkplf~~~~AHgv~-------~~~------------------------~~~-~~~~Witsla~i~~sdL~asGS~~G~  403 (479)
T KOG0299|consen  356 LKKKPLFTSRLAHGVI-------PEL------------------------DPV-NGNFWITSLAVIPGSDLLASGSWSGC  403 (479)
T ss_pred             cccCceeEeecccccc-------CCc------------------------ccc-ccccceeeeEecccCceEEecCCCCc
Confidence            9888777766555311       100                        001 13368999999999999999999999


Q ss_pred             EEEEEccCCcc---eeEEcccCCCeEEEEEeeCCCEEEEE
Q 038577          501 VRLWNVFEGKG---SVESFPHTHDVLTVVYRPDGRQLACS  537 (860)
Q Consensus       501 i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~  537 (860)
                      |++|-+..+-.   +.......+-|++++|+++|+.+++|
T Consensus       404 vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  404 VRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             eEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence            99999988832   22333577889999999999977666

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.8e-26  Score=236.10  Aligned_cols=289  Identities=17%  Similarity=0.263  Sum_probs=213.9

Q ss_pred             cccc-CCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecC----------ceeEEEEEee---CCCEEEE
Q 038577          258 DDFS-QAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISR----------EKITTAVFNE---LGNWLVF  323 (860)
Q Consensus       258 ~~~~-~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~----------~~i~~~~~s~---~~~~l~~  323 (860)
                      +.+. .|.+.|.++.|++||++||+|+.||.|+||.+...+....-....          ..+..+..++   .++....
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            3444 789999999999999999999999999999986532211100000          0000000111   0000000


Q ss_pred             E-EccCCcEEEEEcc----CceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEE
Q 038577          324 G-CAKLGQLLVWEWR----SESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALH  398 (860)
Q Consensus       324 ~-~~~~g~i~v~d~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~  398 (860)
                      - +..... .+.+..    ..+++..+.+|.+.|..+.||.++ +|++++.|.+|++|++....++..|. |.+-|+|++
T Consensus       340 ~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVa  416 (712)
T KOG0283|consen  340 RKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVA  416 (712)
T ss_pred             ccccCCcc-ccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEE
Confidence            0 000011 111111    234566778999999999999775 89999999999999999999999995 999999999


Q ss_pred             Eee-CCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC--
Q 038577          399 FMA-NNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG--  475 (860)
Q Consensus       399 ~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~--  475 (860)
                      |+| |.+++++|+-||.+++|++...+...-....  .-|+++++.|+|+..++|+.+| ..++|+....++.....-  
T Consensus       417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~--~lITAvcy~PdGk~avIGt~~G-~C~fY~t~~lk~~~~~~I~~  493 (712)
T KOG0283|consen  417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR--DLITAVCYSPDGKGAVIGTFNG-YCRFYDTEGLKLVSDFHIRL  493 (712)
T ss_pred             ecccCCCcEeecccccceEEeecCcCeeEeehhhh--hhheeEEeccCCceEEEEEecc-EEEEEEccCCeEEEeeeEee
Confidence            999 6789999999999999999877665544443  5789999999999999999999 999999998776654321  


Q ss_pred             c------ccCeEEEEEcCCC-CEEEEEeCCCcEEEEEccCCcceeEEccc--CCCeEEEEEeeCCCEEEEEeCCCeEEEE
Q 038577          476 H------EGPVHGLVFSPTN-ATLASSSWDKTVRLWNVFEGKGSVESFPH--THDVLTVVYRPDGRQLACSTLDGQIHFW  546 (860)
Q Consensus       476 h------~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iw  546 (860)
                      |      ...|+++.|.|.. ..+++.+.|..|||||.++...+..+.++  ...-....|+.||++++++++|..|++|
T Consensus       494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW  573 (712)
T KOG0283|consen  494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW  573 (712)
T ss_pred             ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence            1      2379999999854 35777788999999999877766666643  2334667899999999999999999999


Q ss_pred             eCCCCc
Q 038577          547 DPLNGE  552 (860)
Q Consensus       547 d~~~~~  552 (860)
                      +.....
T Consensus       574 ~~~~~~  579 (712)
T KOG0283|consen  574 KNDSFN  579 (712)
T ss_pred             eCCCCc
Confidence            986543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.95  E-value=3.8e-25  Score=218.07  Aligned_cols=443  Identities=18%  Similarity=0.252  Sum_probs=293.3

Q ss_pred             CeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcC-CCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcE
Q 038577          114 KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSP-DSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSV  192 (860)
Q Consensus       114 ~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i  192 (860)
                      +.+-|.-+......   .+-+..+.+|.+.|+.+.|+| +..+||+++.|..|+||.+..+...........+.+..-.+
T Consensus        55 ~~lgvlPl~~~Gr~---~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~v  131 (1012)
T KOG1445|consen   55 GKLGVLPLTAKGRR---TRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIV  131 (1012)
T ss_pred             ceEEEEeccccCcc---ccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEE
Confidence            45555555432211   113567789999999999999 44689999999999999998552221112233444555667


Q ss_pred             EEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEe
Q 038577          193 VGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDY  272 (860)
Q Consensus       193 ~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  272 (860)
                      .++.|+|...     -|+..+..|.+++||+.++..                            ...+.+|...|.++.|
T Consensus       132 E~l~fHpTaD-----gil~s~a~g~v~i~D~stqk~----------------------------~~el~~h~d~vQSa~W  178 (1012)
T KOG1445|consen  132 ECLRFHPTAD-----GILASGAHGSVYITDISTQKT----------------------------AVELSGHTDKVQSADW  178 (1012)
T ss_pred             EEeecccCcC-----ceEEeccCceEEEEEcccCce----------------------------eecccCCchhhhcccc
Confidence            8899999887     677777889999999998643                            3445678899999999


Q ss_pred             cCCCCEEEEEEcCCeEEEEECC-CceeEEEEeecCce-eEEEEEeeCCCEEEEEEcc---CCcEEEEEccCc-eEEEEec
Q 038577          273 HRGLDMVVVGFSNGVFGLYQMP-DFVCIHLLSISREK-ITTAVFNELGNWLVFGCAK---LGQLLVWEWRSE-SYILKQQ  346 (860)
Q Consensus       273 ~~~~~~l~~~~~~g~i~~~~~~-~~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~~~---~g~i~v~d~~~~-~~~~~~~  346 (860)
                      +.||..+++.+.|.+|+|||.. .++.++....|.+. -..+.|.-+-..|++++-+   -..+++||.+.. ..+..+.
T Consensus       179 seDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tle  258 (1012)
T KOG1445|consen  179 SEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLE  258 (1012)
T ss_pred             ccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEE
Confidence            9999999999999999999986 45667777666542 3345665555566666543   256889987653 2222221


Q ss_pred             -CcccCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeeEE------------------------Eee------------
Q 038577          347 -GHYFDVNCLAYSPDSQLLATGAD-DNKVKVWTVSSGFCFV------------------------TFT------------  388 (860)
Q Consensus       347 -~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~------------------------~~~------------  388 (860)
                       .....|.---|.||.++++.++. +.++..+.+.......                        .+.            
T Consensus       259 ld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~  338 (1012)
T KOG1445|consen  259 LDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKS  338 (1012)
T ss_pred             eecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccC
Confidence             11222444456777666554443 5556666543211000                        000            


Q ss_pred             ---------------------------------------cCCCceEEE--------------------------------
Q 038577          389 ---------------------------------------EHTNAVTAL--------------------------------  397 (860)
Q Consensus       389 ---------------------------------------~~~~~v~~i--------------------------------  397 (860)
                                                             +.+..|..+                                
T Consensus       339 ~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~  418 (1012)
T KOG1445|consen  339 SIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVP  418 (1012)
T ss_pred             ceeecccccchhhhhhhhhhhCccccCCccCcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCcccc
Confidence                                                   000000000                                


Q ss_pred             --------------------------------------------------------------------------------
Q 038577          398 --------------------------------------------------------------------------------  397 (860)
Q Consensus       398 --------------------------------------------------------------------------------  397 (860)
                                                                                                      
T Consensus       419 ~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S  498 (1012)
T KOG1445|consen  419 TPPAAPRPMSNNNSSSNNVPDVQEQPAVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPAS  498 (1012)
T ss_pred             CCCCCCCccccccccccCCCccccCCCcCcchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCC
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 038577          398 --------------------------------------------------------------------------------  397 (860)
Q Consensus       398 --------------------------------------------------------------------------------  397 (860)
                                                                                                      
T Consensus       499 ~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~  578 (1012)
T KOG1445|consen  499 TPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNT  578 (1012)
T ss_pred             cccccccccccccCccccccCCCCCCcccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccc
Confidence                                                                                            


Q ss_pred             -------EEeeCCCEEE--EEeCCCcEEEEEccccceeeE--e-eCCCCCcEEEEEECC-CCCEEEEEecCCCeEEEEEC
Q 038577          398 -------HFMANNHSLL--SASLDGTVRAWDLFRYRNFRT--F-TTPSSRQFVSLASDQ-SGEVICAGTLDSFEIFVWSM  464 (860)
Q Consensus       398 -------~~~~~~~~l~--s~~~dg~i~~wd~~~~~~~~~--~-~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~v~d~  464 (860)
                             -|+.+..+++  .+|..|.|.+|+++....+..  + .......++.+.|+| |...|++++.++ .|.+|.+
T Consensus       579 ~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg-~i~lWr~  657 (1012)
T KOG1445|consen  579 RLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDG-QINLWRL  657 (1012)
T ss_pred             cCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCc-eEEEEEe
Confidence                   0000000111  112223333444332111100  0 011234577888888 667899999998 9999998


Q ss_pred             CCC-------ceEEEecCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEE
Q 038577          465 KTG-------RLLDILSGHEGPVHGLVFSPT-NATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLAC  536 (860)
Q Consensus       465 ~~~-------~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  536 (860)
                      ..+       .+...+.+|...|+++.|+|- ...|+++++|-+|++||+.+.+....+.+|.+.|..++|||||+.+|+
T Consensus       658 ~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~At  737 (1012)
T KOG1445|consen  658 TANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIAT  737 (1012)
T ss_pred             ccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceee
Confidence            754       345678899999999999994 578999999999999999999988889999999999999999999999


Q ss_pred             EeCCCeEEEEeCCCCce-eEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCC----CeEEEEECC
Q 038577          537 STLDGQIHFWDPLNGEL-MYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSS----KYICMYDVA  611 (860)
Q Consensus       537 ~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d----g~v~vwd~~  611 (860)
                      .+.||+|++|+..+++. ++.-++...                   ..-..+.|--||+++++.+-|    ..|.+||..
T Consensus       738 VcKDg~~rVy~Prs~e~pv~Eg~gpvg-------------------tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq  798 (1012)
T KOG1445|consen  738 VCKDGTLRVYEPRSREQPVYEGKGPVG-------------------TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQ  798 (1012)
T ss_pred             eecCceEEEeCCCCCCCccccCCCCcc-------------------CcceeEEEEecCcEEEEecccccchhhhhhhhhh
Confidence            99999999999987743 333322221                   223567788899999988765    467788776


Q ss_pred             C
Q 038577          612 D  612 (860)
Q Consensus       612 ~  612 (860)
                      +
T Consensus       799 ~  799 (1012)
T KOG1445|consen  799 T  799 (1012)
T ss_pred             h
Confidence            5

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.95  E-value=3.8e-25  Score=219.38  Aligned_cols=475  Identities=12%  Similarity=0.125  Sum_probs=326.0

Q ss_pred             cCCcEEEe-CCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeec
Q 038577           14 RGGNAVLS-QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRF   92 (860)
Q Consensus        14 ~~~~~~~s-dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~   92 (860)
                      +..+++|- ||.-|+.+.|+++.+||+..|.+...+.+|...|.|+|||.||+++|+|+.|..|++|+-+ -+-+-+..|
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~LkYSH   92 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILKYSH   92 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceeeecc
Confidence            55679999 9999999999999999999999999999999999999999999999999999999999854 333445569


Q ss_pred             CCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecc
Q 038577           93 KYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKE  172 (860)
Q Consensus        93 ~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~  172 (860)
                      ...|.|+.|+|-...||+++-+..-+|.......        .. ......|.+.+|..||++++.|-.+|+|.+-+...
T Consensus        93 ~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V--------~K-~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g  163 (1081)
T KOG1538|consen   93 NDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSV--------SK-HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG  163 (1081)
T ss_pred             CCeeeEeecCchHHHhhhcchhhccccChhhhhH--------Hh-hhhheeEEEeeecCCCcEEEEeccCceEEeecCCC
Confidence            9999999999999999999888888998765431        11 11245688999999999999999999999986554


Q ss_pred             cccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeE
Q 038577          173 KLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKW  252 (860)
Q Consensus       173 ~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (860)
                      . +.   .......|.+.+|++++|+|.........+++.....++.++.+++..-                        
T Consensus       164 E-ek---~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~I------------------------  215 (1081)
T KOG1538|consen  164 E-EK---VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQI------------------------  215 (1081)
T ss_pred             C-cc---eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceee------------------------
Confidence            4 22   2334445688999999999987655556888888889999998876321                        


Q ss_pred             EeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEE
Q 038577          253 GLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLL  332 (860)
Q Consensus       253 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~  332 (860)
                           ..-..-.-...|+.+.++|.++++|+.++.+.+|.. .|-.+.++......|..++..|++++++.++.+ |+|.
T Consensus       216 -----gk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqD-GTiA  288 (1081)
T KOG1538|consen  216 -----GKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQD-GTIA  288 (1081)
T ss_pred             -----cccccCCCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEEEcc-Ceee
Confidence                 000111224578999999999999999999999987 566677777777899999999999999999987 9999


Q ss_pred             EEEccCceEEEEe-------------------cCcccCe------EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 038577          333 VWEWRSESYILKQ-------------------QGHYFDV------NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTF  387 (860)
Q Consensus       333 v~d~~~~~~~~~~-------------------~~~~~~v------~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  387 (860)
                      .|++.....-...                   .+....|      ..+++-  .+.+++--.+ .|.+|.+.++......
T Consensus       289 CyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiY--rnrLAVQLpe-ki~iYel~se~~~~mh  365 (1081)
T KOG1538|consen  289 CYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIY--RNRLAVQLPE-KILIYELYSEDLSDMH  365 (1081)
T ss_pred             hhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhh--hhhheecccc-eEEEEeccccccccch
Confidence            9987533211000                   0011111      112221  2345554443 6888887655332211


Q ss_pred             ec------CCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECC-CCCEEEEEecCCCeEE
Q 038577          388 TE------HTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQ-SGEVICAGTLDSFEIF  460 (860)
Q Consensus       388 ~~------~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~  460 (860)
                      ..      ..-...-+..+  ++.++.+ .+..+..+|+..-+ .+.....+-.....+.-.| ...-+++|..+|+..+
T Consensus       366 Y~v~ekI~kkf~cSLlVVc--~~HiVlC-qekrLqClDF~Gvk-~ReW~M~S~iRYikV~GGP~gREgL~vGlknGqV~k  441 (1081)
T KOG1538|consen  366 YRVKEKIIKKFECSLLVVC--ANHIVLC-QEKRLQCLDFSGVK-EREWQMESLIRYIKVIGGPPGREGLLVGLKNGQVLK  441 (1081)
T ss_pred             hHHHHHHHhhccceEEEEE--cCeEEEE-cccceeeecccchh-hhhhhHHHHHHhhhhhcCCCCcceeEEEecCCcEEE
Confidence            00      00011111111  2344443 45677788774321 1111111100111111122 3346778888884445


Q ss_pred             EEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCC
Q 038577          461 VWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLD  540 (860)
Q Consensus       461 v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  540 (860)
                      +|= ++.-++.. ......|.|+.++...+.||+..+.++..++|+.+++.+.+    ...+.+++|.....-+++-+..
T Consensus       442 iF~-dN~~PiLl-~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL~Q----Epg~nSV~wNT~~E~MlcfT~~  515 (1081)
T KOG1538|consen  442 IFV-DNLFPILL-LKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELLFQ----EPGANSVAWNTQCEDMLCFTGG  515 (1081)
T ss_pred             EEe-cCCchhhe-ecccceeEEeeccCCcceEEEEccCCeEEEEEccCCceEee----cCCCceEEeeccccceEEEecC
Confidence            543 33323222 23567899999999999999999999999999999874443    3457889998754433333334


Q ss_pred             CeEEEE
Q 038577          541 GQIHFW  546 (860)
Q Consensus       541 g~i~iw  546 (860)
                      |.+.|-
T Consensus       516 g~L~VR  521 (1081)
T KOG1538|consen  516 GYLNVR  521 (1081)
T ss_pred             CceEEE
Confidence            655553

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.2e-26  Score=218.44  Aligned_cols=295  Identities=20%  Similarity=0.278  Sum_probs=225.1

Q ss_pred             CeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEE
Q 038577          286 GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLA  365 (860)
Q Consensus       286 g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  365 (860)
                      .++.+||+.++.....+++.......-.-.-.+.+++++......+.+|.+..........--.++|.|++-+|+|.+++
T Consensus        18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~   97 (476)
T KOG0646|consen   18 INCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLL   97 (476)
T ss_pred             cceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEE
Confidence            56999999999998888776322111111112367777766667899999887665554444567899999999999999


Q ss_pred             EEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCC
Q 038577          366 TGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQS  445 (860)
Q Consensus       366 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (860)
                      .|+..|.+++|.+.+|..+..+..|-.+|+++.|+.|+.++++||.||.|.+|.+.+                       
T Consensus        98 ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~-----------------------  154 (476)
T KOG0646|consen   98 AGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD-----------------------  154 (476)
T ss_pred             eecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe-----------------------
Confidence            998999999999999999999999999999999999999999999999999998621                       


Q ss_pred             CCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCC--CCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeE
Q 038577          446 GEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPT--NATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVL  523 (860)
Q Consensus       446 ~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  523 (860)
                         ++....+         .+-++++.+..|.-+|+++...+.  ..+++|+|.|.++++||+..+. +......+..+.
T Consensus       155 ---lv~a~~~---------~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-LLlti~fp~si~  221 (476)
T KOG0646|consen  155 ---LVSADND---------HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV-LLLTITFPSSIK  221 (476)
T ss_pred             ---ecccccC---------CCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce-eeEEEecCCcce
Confidence               1111111         145677888899999999988765  4689999999999999999986 555556788999


Q ss_pred             EEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEE-EecccccCCCcccccccccccc-CCCCcEEEEEEecCCCEEEEecC
Q 038577          524 TVVYRPDGRQLACSTLDGQIHFWDPLNGELMYT-IEGRRDISGGRLMTDRRSAANS-SSGKCFTTLCYSADGSYILAGGS  601 (860)
Q Consensus       524 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~s~~g~~l~~~~~  601 (860)
                      +++.+|-++.+++|+.+|.|.+.++........ +.    ..+......+...... ..++.|++++.+-||..|++|+.
T Consensus       222 av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~----~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~  297 (476)
T KOG0646|consen  222 AVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVN----QKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE  297 (476)
T ss_pred             eEEEcccccEEEecCCcceEEeeehhcCCccccccc----ccccccccceeeeeccccCCcceeEEEEecCccEEEeeCC
Confidence            999999999999999999999988754331000 00    0000000011111111 11258999999999999999999


Q ss_pred             CCeEEEEECCCceEEEEEe
Q 038577          602 SKYICMYDVADQVLLRRFQ  620 (860)
Q Consensus       602 dg~v~vwd~~~~~~~~~~~  620 (860)
                      ||.|+|||+.+.++++++.
T Consensus       298 dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  298 DGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             CCCEEEEecchHHHHHHHh
Confidence            9999999999999998765

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.5e-25  Score=210.76  Aligned_cols=287  Identities=16%  Similarity=0.256  Sum_probs=241.4

Q ss_pred             cCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCC--ceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccC
Q 038577          261 SQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPD--FVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRS  338 (860)
Q Consensus       261 ~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~  338 (860)
                      ....+.|+++.|+|....+++++.||.+++|.+..  ...++.+.....+|.+.+|.|+|...+++++....++.||+.+
T Consensus       210 ~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~  289 (514)
T KOG2055|consen  210 HPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET  289 (514)
T ss_pred             CcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence            34557899999999999999999999999998853  3456777778889999999999995555555558999999988


Q ss_pred             ceEEEE--ecCcc-cCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcE
Q 038577          339 ESYILK--QQGHY-FDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTV  415 (860)
Q Consensus       339 ~~~~~~--~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i  415 (860)
                      .+....  ..++. ..+..+..+|++++|+..+..|.|.+....+++.+..++ -.+.|.+++|+.+++.|++++.+|.|
T Consensus       290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV  368 (514)
T KOG2055|consen  290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEV  368 (514)
T ss_pred             cccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceE
Confidence            765433  23332 357788999999999999999999999999999988886 57889999999999999999999999


Q ss_pred             EEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCC------CceEEEecCcccCeEEEEEcCCC
Q 038577          416 RAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT------GRLLDILSGHEGPVHGLVFSPTN  489 (860)
Q Consensus       416 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~------~~~~~~~~~h~~~v~~l~~s~~~  489 (860)
                      .+||++...+++.+.......-++++.++++.++|+|+..| .|-|||.++      .+++..+..-...|++++|+||.
T Consensus       369 ~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~G-iVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~  447 (514)
T KOG2055|consen  369 YVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSG-IVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA  447 (514)
T ss_pred             EEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcc-eEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcch
Confidence            99999999999999988877788999999999999999998 999999663      45666666667889999999999


Q ss_pred             CEEEEEeC--CCcEEEEEccCCcceeEEc---ccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCC
Q 038577          490 ATLASSSW--DKTVRLWNVFEGKGSVESF---PHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPL  549 (860)
Q Consensus       490 ~~l~s~~~--dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  549 (860)
                      +.||.+|.  +..+++--+.+......+.   ..-+.|+|++|||.|.+||.|..+|.+.+|.+.
T Consensus       448 qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  448 QILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             hhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            99988775  5678888877665333332   244568999999999999999999999999874

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.8e-25  Score=212.69  Aligned_cols=285  Identities=14%  Similarity=0.242  Sum_probs=231.4

Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCcEEEEECC--CCeeEEEeecCCCceEEEEEeeCCC-EEEEEeCCCcEEEEEccccce
Q 038577          349 YFDVNCLAYSPDSQLLATGADDNKVKVWTVS--SGFCFVTFTEHTNAVTALHFMANNH-SLLSASLDGTVRAWDLFRYRN  425 (860)
Q Consensus       349 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~i~~wd~~~~~~  425 (860)
                      .+.|+++.|+|....+++++.||.+++|.+.  ....++.+.-...+|.+.+|.|+|. .+++++....++.||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            4679999999999999999999999999876  3455666666788999999999998 899999999999999988765


Q ss_pred             eeEeeC--CCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 038577          426 FRTFTT--PSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRL  503 (860)
Q Consensus       426 ~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i  503 (860)
                      .+.-..  .....+..+.+++++++|+..+..| .|.+....+++.+..++ -.+.|..++|+.|++.|+.++.+|.|.+
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G-~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v  370 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG-HIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYV  370 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEcccCc-eEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEE
Confidence            443322  2233567889999999999999998 99999999999999887 6789999999999999999999999999


Q ss_pred             EEccCCcceeEEcc-cCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCC------ceeEEEecccccCCCcccccccccc
Q 038577          504 WNVFEGKGSVESFP-HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNG------ELMYTIEGRRDISGGRLMTDRRSAA  576 (860)
Q Consensus       504 wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  576 (860)
                      ||++...++..+.. ..-.-++++.|++|.+||+|+..|.|.|||.++.      +++..+..-.               
T Consensus       371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---------------  435 (514)
T KOG2055|consen  371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---------------  435 (514)
T ss_pred             EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---------------
Confidence            99999876665553 2234578888999999999999999999997653      2333332221               


Q ss_pred             ccCCCCcEEEEEEecCCCEEEEecC--CCeEEEEECCCceEEEEEeecccccccceeeeccCCCCCCCCCCccccCCCCC
Q 038577          577 NSSSGKCFTTLCYSADGSYILAGGS--SKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSD  654 (860)
Q Consensus       577 ~~~~~~~i~~l~~s~~g~~l~~~~~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  654 (860)
                           ..|+++.|++|++.|+.++.  ...+++-.+++......|+                                  
T Consensus       436 -----t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP----------------------------------  476 (514)
T KOG2055|consen  436 -----TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFP----------------------------------  476 (514)
T ss_pred             -----eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCC----------------------------------
Confidence                 25999999999999998875  5678888777765444332                                  


Q ss_pred             ccccccccccCccccCCCCCCCCCCCCccceeEEEECCCCCeEEEeccccEE-EEecC
Q 038577          655 TEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVL-VYSID  711 (860)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~-i~~~~  711 (860)
                                            ..+.|...|++++|||.|.+|++|..+|.+ +|.+.
T Consensus       477 ----------------------~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  477 ----------------------TSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ----------------------CCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence                                  124555689999999999999999999955 89764

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.2e-25  Score=203.12  Aligned_cols=297  Identities=17%  Similarity=0.214  Sum_probs=247.1

Q ss_pred             EeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee-cCCceeEEEECCCCCEEEEE-eCCeEEEEe--
Q 038577           45 VTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-FKYPVNAILFSPNGKYIAVG-TGKLVQIWR--  120 (860)
Q Consensus        45 ~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~fspdg~~la~~-~~~~i~iwd--  120 (860)
                      ...+.||+..|..++.......+.+++.|.+.+||.+++|.++..+. |.+.|++++|++.+.+++++ +|+...||.  
T Consensus       141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~a  220 (481)
T KOG0300|consen  141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAA  220 (481)
T ss_pred             hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHh
Confidence            45567999999999998888899999999999999999999999887 99999999999999999999 889999997  


Q ss_pred             ----CCCCC--------ccc-------------------ceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEe
Q 038577          121 ----SPGFK--------KEV-------------------FAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFY  169 (860)
Q Consensus       121 ----~~~~~--------~~~-------------------~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd  169 (860)
                          ++...        ...                   .-..++..+.+|.+.|.+..|...|+.+++++-|++..+||
T Consensus       221 v~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwD  300 (481)
T KOG0300|consen  221 VNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWD  300 (481)
T ss_pred             hcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeee
Confidence                22100        000                   01135678999999999999999999999999999999999


Q ss_pred             ecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCccee
Q 038577          170 VKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRV  249 (860)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (860)
                      ++++      .....+.||....+.|+-+|..+     .+++.+.|.+.++||.....                      
T Consensus       301 VEtg------e~v~~LtGHd~ELtHcstHptQr-----LVvTsSrDtTFRLWDFReaI----------------------  347 (481)
T KOG0300|consen  301 VETG------EVVNILTGHDSELTHCSTHPTQR-----LVVTSSRDTTFRLWDFREAI----------------------  347 (481)
T ss_pred             eccC------ceeccccCcchhccccccCCcce-----EEEEeccCceeEeccchhhc----------------------
Confidence            9999      77899999999999999999998     99999999999999997532                      


Q ss_pred             eeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCC
Q 038577          250 KKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLG  329 (860)
Q Consensus       250 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g  329 (860)
                           .....|.+|...|++..|..+. .+++|+.|.+|++||+.+.......-....++..++.+..+..+++-. ++.
T Consensus       348 -----~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPh-DNR  420 (481)
T KOG0300|consen  348 -----QSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPH-DNR  420 (481)
T ss_pred             -----ceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEecc-CCc
Confidence                 3457788999999999998765 588999999999999987765443333456888889888776666654 459


Q ss_pred             cEEEEEccCceEEE----EecCcccCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCC
Q 038577          330 QLLVWEWRSESYIL----KQQGHYFDVNCLAYSPDS--QLLATGADDNKVKVWTVSSG  381 (860)
Q Consensus       330 ~i~v~d~~~~~~~~----~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~  381 (860)
                      +|++||+.......    .-++|...|.|++|..+.  .-|++++-|..+.-|.+...
T Consensus       421 qvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  421 QVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             eEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            99999998765433    236899999999997653  35788899999999987653

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1e-25  Score=214.98  Aligned_cols=250  Identities=24%  Similarity=0.363  Sum_probs=214.3

Q ss_pred             CEEEEEE-cCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEE
Q 038577          277 DMVVVGF-SNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCL  355 (860)
Q Consensus       277 ~~l~~~~-~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~  355 (860)
                      .+++++. ....+.+|.+...........-.+++.+++-+|+|.+++.++-. |.+++|.+.+|..+..+.+|...|+|+
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~-g~lYlWelssG~LL~v~~aHYQ~ITcL  129 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTIS-GNLYLWELSSGILLNVLSAHYQSITCL  129 (476)
T ss_pred             hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeeccc-CcEEEEEeccccHHHHHHhhccceeEE
Confidence            4555444 34578889886555555444456789999999999999988666 999999999999999999999999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECC---------CCeeEEEeecCCCceEEEEEeeCC--CEEEEEeCCCcEEEEEccccc
Q 038577          356 AYSPDSQLLATGADDNKVKVWTVS---------SGFCFVTFTEHTNAVTALHFMANN--HSLLSASLDGTVRAWDLFRYR  424 (860)
Q Consensus       356 ~~s~~~~~l~~~~~dg~i~iwd~~---------~~~~~~~~~~~~~~v~~i~~~~~~--~~l~s~~~dg~i~~wd~~~~~  424 (860)
                      .|+.||.+|++|+.||.|.+|.+.         +-+++..+..|.-+|+++...+.|  .++++++.|.++++||+..+.
T Consensus       130 ~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~  209 (476)
T KOG0646|consen  130 KFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV  209 (476)
T ss_pred             EEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce
Confidence            999999999999999999999863         346778889999999999987653  689999999999999999999


Q ss_pred             eeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCC----------------ceEEEecCccc--CeEEEEEc
Q 038577          425 NFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTG----------------RLLDILSGHEG--PVHGLVFS  486 (860)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~----------------~~~~~~~~h~~--~v~~l~~s  486 (860)
                      .+..+..+.  .+.+++++|.++.+++|+.+| .|.+.++...                ..+..+.||.+  +|+|++++
T Consensus       210 LLlti~fp~--si~av~lDpae~~~yiGt~~G-~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais  286 (476)
T KOG0646|consen  210 LLLTITFPS--SIKAVALDPAERVVYIGTEEG-KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS  286 (476)
T ss_pred             eeEEEecCC--cceeEEEcccccEEEecCCcc-eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEe
Confidence            988888765  689999999999999999999 8988876532                34566788988  99999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeC
Q 038577          487 PTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPD  530 (860)
Q Consensus       487 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  530 (860)
                      -||..|++|+.||.|+|||+.+.+++.......++|+.+.+.|-
T Consensus       287 ~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  287 TDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             cCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence            99999999999999999999998877766668889999998764

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.2e-24  Score=197.04  Aligned_cols=244  Identities=17%  Similarity=0.312  Sum_probs=208.1

Q ss_pred             EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCC--EEEEEeCCCcEEEEE
Q 038577          342 ILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNH--SLLSASLDGTVRAWD  419 (860)
Q Consensus       342 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~s~~~dg~i~~wd  419 (860)
                      +..+..|.+.+++++.+  +.++|+|+.|-+|+|||+.....+..+..|.+.|+++.|.++-.  .|++|+.||.|.+|+
T Consensus        36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~  113 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR  113 (362)
T ss_pred             cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence            44557899999999995  88999999999999999999999999999999999999998764  899999999999999


Q ss_pred             ccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCC
Q 038577          420 LFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDK  499 (860)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg  499 (860)
                      .........+..+.. +|+.++++|.|++-++.+.|+ .+++||+-.|+.-..++- ...-+.+.|+|.|.+++.++.++
T Consensus       114 ~~~W~~~~slK~H~~-~Vt~lsiHPS~KLALsVg~D~-~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~  190 (362)
T KOG0294|consen  114 VGSWELLKSLKAHKG-QVTDLSIHPSGKLALSVGGDQ-VLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRNK  190 (362)
T ss_pred             cCCeEEeeeeccccc-ccceeEecCCCceEEEEcCCc-eeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEeccE
Confidence            999988888887665 499999999999999999998 999999999887655542 22334499999999998888665


Q ss_pred             cEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccC
Q 038577          500 TVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSS  579 (860)
Q Consensus       500 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  579 (860)
                       |-+|.+.+.. +......+..+.++.|- ++..|++|.+|+.|.+||.++..+...+.+|..                 
T Consensus       191 -i~i~q~d~A~-v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~-----------------  250 (362)
T KOG0294|consen  191 -IDIYQLDNAS-VFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN-----------------  250 (362)
T ss_pred             -EEEEecccHh-Hhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchh-----------------
Confidence             9999988776 33333344667777776 677899999999999999999999999999986                 


Q ss_pred             CCCcEEEEEE--ecCCCEEEEecCCCeEEEEECCCc
Q 038577          580 SGKCFTTLCY--SADGSYILAGGSSKYICMYDVADQ  613 (860)
Q Consensus       580 ~~~~i~~l~~--s~~g~~l~~~~~dg~v~vwd~~~~  613 (860)
                         +|-++.+  .|++.||++++.||.|+|||++..
T Consensus       251 ---RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  251 ---RVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             ---heeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence               5888874  467889999999999999999876

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=3.4e-21  Score=199.70  Aligned_cols=273  Identities=16%  Similarity=0.208  Sum_probs=218.3

Q ss_pred             cCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccC-eEEEEee-cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCC
Q 038577           49 VESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCH-VVLHRVR-FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFK  125 (860)
Q Consensus        49 ~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~-~~~~~~~-~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~  125 (860)
                      ..|...-+.++|.|+|++|.+++.||.|++|+.... +.-..+. +...|.+++-.  +.+++++ .++.|.+|....++
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence            369999999999999999999999999999987765 3333344 67777777765  3466666 89999999999887


Q ss_pred             cccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCc
Q 038577          126 KEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDK  205 (860)
Q Consensus       126 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~  205 (860)
                      ..       ..+...+-++.+++|+-+|+++|.|+.|-.|++-+..+.      .....+.+|.++|.++.|+|.+.   
T Consensus        88 ~~-------~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~------s~~~~lrgh~apVl~l~~~p~~~---  151 (933)
T KOG1274|consen   88 ED-------TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS------SQEKVLRGHDAPVLQLSYDPKGN---  151 (933)
T ss_pred             cc-------ceeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc------chheeecccCCceeeeeEcCCCC---
Confidence            42       234445667999999999999999999999999999988      67899999999999999999999   


Q ss_pred             cceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcC
Q 038577          206 VNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSN  285 (860)
Q Consensus       206 ~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  285 (860)
                        .|++.+-||.|++|+++++.....                    |.-..+..-......+..++|+|++..+++...+
T Consensus       152 --fLAvss~dG~v~iw~~~~~~~~~t--------------------l~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d  209 (933)
T KOG1274|consen  152 --FLAVSSCDGKVQIWDLQDGILSKT--------------------LTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD  209 (933)
T ss_pred             --EEEEEecCceEEEEEcccchhhhh--------------------cccCCccccccccceeeeeeecCCCCeEEeeccC
Confidence              999999999999999998654211                    1111111111114457889999999999999999


Q ss_pred             CeEEEEECCCceeEEEEeec--CceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCE
Q 038577          286 GVFGLYQMPDFVCIHLLSIS--REKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQL  363 (860)
Q Consensus       286 g~i~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~  363 (860)
                      +.|.+|+..+.+....++..  ...+..+.|+|.|.+|+++.-+ |.|.|||+++-..    ......|.|++|.|+++.
T Consensus       210 ~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~-g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~  284 (933)
T KOG1274|consen  210 NTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLD-GQILVWNVDTHER----HEFKRAVCCEAWKPNANA  284 (933)
T ss_pred             CeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccC-CcEEEEecccchh----ccccceeEEEecCCCCCe
Confidence            99999999999988877653  3358999999999999999877 9999999998221    233456899999998765


Q ss_pred             EEE
Q 038577          364 LAT  366 (860)
Q Consensus       364 l~~  366 (860)
                      +-.
T Consensus       285 it~  287 (933)
T KOG1274|consen  285 ITL  287 (933)
T ss_pred             eEE
Confidence            543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=1.3e-23  Score=215.99  Aligned_cols=279  Identities=10%  Similarity=0.074  Sum_probs=218.5

Q ss_pred             CEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEE
Q 038577          277 DMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLA  356 (860)
Q Consensus       277 ~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~  356 (860)
                      +.+++++.++.+.+||+.+++....+..+. .+..++|+|+|+.+++++..++.+++||..+++....+..+.. +..++
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~   79 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA   79 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence            467888999999999999998888887554 4678999999998877766679999999999887776655443 56789


Q ss_pred             EcCCCCEEEEE-eCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCC-cEEEEEccccceeeEeeCCCC
Q 038577          357 YSPDSQLLATG-ADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDG-TVRAWDLFRYRNFRTFTTPSS  434 (860)
Q Consensus       357 ~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg-~i~~wd~~~~~~~~~~~~~~~  434 (860)
                      |+|+++.++++ +.++.+++||+.+++.+..+.. ...+.+++|+|++..+++++.++ .+..||..+++......... 
T Consensus        80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~-  157 (300)
T TIGR03866        80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQ-  157 (300)
T ss_pred             ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCC-
Confidence            99999977655 5589999999998887777653 34578899999999999888775 46778988877665544332 


Q ss_pred             CcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcc-----c--CeEEEEEcCCCCEEEE-EeCCCcEEEEEc
Q 038577          435 RQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHE-----G--PVHGLVFSPTNATLAS-SSWDKTVRLWNV  506 (860)
Q Consensus       435 ~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~-----~--~v~~l~~s~~~~~l~s-~~~dg~i~iwd~  506 (860)
                       ....++++|+++.+++++..++.+++||+++++.+..+..+.     .  ....++|+|++++++. .+.++.+.+||+
T Consensus       158 -~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~  236 (300)
T TIGR03866       158 -RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDA  236 (300)
T ss_pred             -CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEEC
Confidence             346789999999987766533499999999998877664321     1  2346889999998554 445678999999


Q ss_pred             cCCcceeEEcccCCCeEEEEEeeCCCEEEEE-eCCCeEEEEeCCCCceeEEEeccc
Q 038577          507 FEGKGSVESFPHTHDVLTVVYRPDGRQLACS-TLDGQIHFWDPLNGELMYTIEGRR  561 (860)
Q Consensus       507 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~  561 (860)
                      .+++.... ..+...+.+++|+|+|++|+++ ..+|.|.+||+.+++.+..++...
T Consensus       237 ~~~~~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~  291 (300)
T TIGR03866       237 KTYEVLDY-LLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGR  291 (300)
T ss_pred             CCCcEEEE-EEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccc
Confidence            88764433 3445678999999999999886 468999999999999999887654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=7.2e-26  Score=217.11  Aligned_cols=280  Identities=17%  Similarity=0.232  Sum_probs=235.3

Q ss_pred             CCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccC---eEEEEee---cCCceeEEEECCCCCEEEEE-eCCeEEEEeCC
Q 038577           50 ESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCH---VVLHRVR---FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSP  122 (860)
Q Consensus        50 ~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~---~~~~~~~---~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~  122 (860)
                      .|..-|.++++|...+++.+|+. |.|+|||+...   ..+..+.   -..-|+++..+|||+.|.+| .-.++.|||+.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA  495 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence            68888999999999999999885 88999999743   2333333   45679999999999999988 66799999998


Q ss_pred             CCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCC
Q 038577          123 GFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKK  202 (860)
Q Consensus       123 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~  202 (860)
                      .....     +...+....-...+++.+||.+..++++.||.|.|||+.+.      ..+..+.||.+.+.++.+++||.
T Consensus       496 apTpr-----ikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq------~~VrqfqGhtDGascIdis~dGt  564 (705)
T KOG0639|consen  496 APTPR-----IKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ------TLVRQFQGHTDGASCIDISKDGT  564 (705)
T ss_pred             CCCcc-----hhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc------eeeecccCCCCCceeEEecCCCc
Confidence            76531     22333433455788999999999999999999999999998      78899999999999999999999


Q ss_pred             CCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEE
Q 038577          203 TDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVG  282 (860)
Q Consensus       203 ~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  282 (860)
                           .|-+|+-|.+++.||+..+..                             ..-....+.|.++.++|.++++++|
T Consensus       565 -----klWTGGlDntvRcWDlregrq-----------------------------lqqhdF~SQIfSLg~cP~~dWlavG  610 (705)
T KOG0639|consen  565 -----KLWTGGLDNTVRCWDLREGRQ-----------------------------LQQHDFSSQIFSLGYCPTGDWLAVG  610 (705)
T ss_pred             -----eeecCCCccceeehhhhhhhh-----------------------------hhhhhhhhhheecccCCCccceeee
Confidence                 999999999999999987533                             1112234679999999999999999


Q ss_pred             EcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCC
Q 038577          283 FSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQ  362 (860)
Q Consensus       283 ~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~  362 (860)
                      -.++.+.+... ++.....+..|..-|.++.|.+.|+|+++++.+ ..+..|...-|..+.... ....|.++.++.|.+
T Consensus       611 Mens~vevlh~-skp~kyqlhlheScVLSlKFa~cGkwfvStGkD-nlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddk  687 (705)
T KOG0639|consen  611 MENSNVEVLHT-SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKD-NLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDK  687 (705)
T ss_pred             cccCcEEEEec-CCccceeecccccEEEEEEecccCceeeecCch-hhhhhccCccccceeecc-ccCcceeeeeccCce
Confidence            99999999988 555666778888999999999999999999876 899999998888777654 356799999999999


Q ss_pred             EEEEEeCCCcEEEEEC
Q 038577          363 LLATGADDNKVKVWTV  378 (860)
Q Consensus       363 ~l~~~~~dg~i~iwd~  378 (860)
                      +++||+.|....+|.+
T Consensus       688 yIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  688 YIVTGSGDKKATVYEV  703 (705)
T ss_pred             EEEecCCCcceEEEEE
Confidence            9999999988888864

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=9.9e-25  Score=218.28  Aligned_cols=282  Identities=22%  Similarity=0.367  Sum_probs=230.8

Q ss_pred             ccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecc
Q 038577          180 NKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDD  259 (860)
Q Consensus       180 ~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (860)
                      .....+.+|...|..+++.+..      .++++++||++++|+-..++.                          .....
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~~~------~i~s~sRd~t~~vw~~~~~~~--------------------------l~~~~   52 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTDGV------CIISGSRDGTVKVWAKKGKQY--------------------------LETHA   52 (745)
T ss_pred             eeEEEeccCccchheeEecCCe------EEeecCCCCceeeeeccCccc--------------------------cccee
Confidence            4567889999999999987765      699999999999998766432                          22344


Q ss_pred             ccCCCCceEE-EEecC-CCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc
Q 038577          260 FSQAPSKVTA-CDYHR-GLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR  337 (860)
Q Consensus       260 ~~~~~~~v~~-~~~~~-~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~  337 (860)
                      +.++.+.|.+ +++.+ ++-.+++|+.|+.+.+|......+...+.+|...|.++....++. +++++.+ .++++|-..
T Consensus        53 ~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD-~TakvW~~~  130 (745)
T KOG0301|consen   53 FEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWD-STAKVWRIG  130 (745)
T ss_pred             cccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccc-cceEEecch
Confidence            5556666666 77775 455699999999999999999999999999999999998888887 6655554 999999754


Q ss_pred             CceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 038577          338 SESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRA  417 (860)
Q Consensus       338 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~  417 (860)
                      .  +...+++|...|++++.-|++ .++||+.|.+|++|.-  ++.++++.+|.+.|+++++.+++ .+++++.||.|+.
T Consensus       131 ~--l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~  204 (745)
T KOG0301|consen  131 E--LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRL  204 (745)
T ss_pred             h--hhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEE
Confidence            3  344478999999999999888 7889999999999974  78889999999999999998775 5788888888777


Q ss_pred             EEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeC
Q 038577          418 WDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSW  497 (860)
Q Consensus       418 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  497 (860)
                      |++                                             +|+.+..+.+|..-|.++...+++..++++++
T Consensus       205 w~~---------------------------------------------~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gE  239 (745)
T KOG0301|consen  205 WDL---------------------------------------------DGEVLLEMHGHTNFVYSISMALSDGLIVSTGE  239 (745)
T ss_pred             Eec---------------------------------------------cCceeeeeeccceEEEEEEecCCCCeEEEecC
Confidence            775                                             35667778889999999998889999999999


Q ss_pred             CCcEEEEEccCCcceeEEcccCC-CeEEEEEeeCCCEEEEEeCCCeEEEEeCCC
Q 038577          498 DKTVRLWNVFEGKGSVESFPHTH-DVLTVVYRPDGRQLACSTLDGQIHFWDPLN  550 (860)
Q Consensus       498 dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  550 (860)
                      |++++||+..  + +.+...++. .|+++.+-++|. +++|+.||.|+||....
T Consensus       240 DrtlriW~~~--e-~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  240 DRTLRIWKKD--E-CVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             CceEEEeecC--c-eEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence            9999999976  3 444455544 899999998886 67788899999998763

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=2.3e-23  Score=214.08  Aligned_cols=275  Identities=15%  Similarity=0.124  Sum_probs=212.6

Q ss_pred             EEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEE
Q 038577          321 LVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLL-ATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHF  399 (860)
Q Consensus       321 l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~  399 (860)
                      ++++...++.+.+||..+++....+..+.. +.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++|
T Consensus         3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~   80 (300)
T TIGR03866         3 AYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFAL   80 (300)
T ss_pred             EEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEE
Confidence            344445569999999999988887766543 6789999999876 5667789999999999888777765443 567899


Q ss_pred             eeCCCEEEEE-eCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCccc
Q 038577          400 MANNHSLLSA-SLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEG  478 (860)
Q Consensus       400 ~~~~~~l~s~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~  478 (860)
                      +|+++.++++ +.++.+++||+.+.+.+..+...  ..+.+++++|+|.+++++..++..+..||..+++....+.. ..
T Consensus        81 ~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~  157 (300)
T TIGR03866        81 HPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG--VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQ  157 (300)
T ss_pred             CCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC--CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CC
Confidence            9999877654 56899999999988777666533  24578999999999999888764688899998877665542 33


Q ss_pred             CeEEEEEcCCCCEEEEE-eCCCcEEEEEccCCcceeEEccc-------CCCeEEEEEeeCCCEEEEE-eCCCeEEEEeCC
Q 038577          479 PVHGLVFSPTNATLASS-SWDKTVRLWNVFEGKGSVESFPH-------THDVLTVVYRPDGRQLACS-TLDGQIHFWDPL  549 (860)
Q Consensus       479 ~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~  549 (860)
                      .+.+++|+|++++++.+ ..++.|++||+.+++....+..+       ......++|+|++++++++ +.++.+.+||+.
T Consensus       158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~  237 (300)
T TIGR03866       158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK  237 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence            45789999999988654 46899999999988754433211       1123568899999986554 456789999999


Q ss_pred             CCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEe-cCCCeEEEEECCCceEEEEEee
Q 038577          550 NGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAG-GSSKYICMYDVADQVLLRRFQI  621 (860)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~-~~dg~v~vwd~~~~~~~~~~~~  621 (860)
                      +++.+..+....                     .+.+++|+|+|++|+++ +.+|.|.+||+.+++.+..++.
T Consensus       238 ~~~~~~~~~~~~---------------------~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~  289 (300)
T TIGR03866       238 TYEVLDYLLVGQ---------------------RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV  289 (300)
T ss_pred             CCcEEEEEEeCC---------------------CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence            988776553322                     37899999999999886 4689999999999999988864

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.3e-22  Score=209.73  Aligned_cols=503  Identities=16%  Similarity=0.229  Sum_probs=339.1

Q ss_pred             CCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee-cCCceeEEEECCCCC---EEEEE-eCCeEEEEeCCCC
Q 038577           50 ESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-FKYPVNAILFSPNGK---YIAVG-TGKLVQIWRSPGF  124 (860)
Q Consensus        50 ~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~fspdg~---~la~~-~~~~i~iwd~~~~  124 (860)
                      |-...-..-.||+|++++.... +..|.||...+|.++..+. |..++..+.+.|...   ++.+. .+|.|++||...+
T Consensus        14 g~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~   92 (792)
T KOG1963|consen   14 GRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDG   92 (792)
T ss_pred             cccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCc
Confidence            3333334567999999988766 4689999999999999887 899999999988654   33344 8999999999987


Q ss_pred             CcccceeEEEEEeeccCCCeEEEEEcC---CCCeEE-EeecCC------------eEEEEeecccccCcccccceEeecC
Q 038577          125 KKEVFAFELIRTLADCNDKVTALNWSP---DSNYLL-VGSKDL------------AVRLFYVKEKLKGIHTNKPFLLLGH  188 (860)
Q Consensus       125 ~~~~~~~~~~~~~~~h~~~v~~l~~s~---d~~~l~-s~~~dg------------~v~vwd~~~~~~~~~~~~~~~~~~h  188 (860)
                      .       +++++..+ .++..+.+.|   +-...+ .+..|.            +++-+.+.+. ..   .....+..|
T Consensus        93 ~-------Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~-~~---~~~d~~~~~  160 (792)
T KOG1963|consen   93 E-------LLKTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATF-DS---AKGDFLKEH  160 (792)
T ss_pred             E-------EEEEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeec-cc---cchhhhhhh
Confidence            6       45555433 2344444432   111122 111221            1111111111 00   111122223


Q ss_pred             CCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceE
Q 038577          189 RDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVT  268 (860)
Q Consensus       189 ~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  268 (860)
                      .. -..+.+++.+.      +.....+..+.+|....+.                        |.......-..|...++
T Consensus       161 ~~-~~~I~~~~~ge------~~~i~~~~~~~~~~v~~~~------------------------~~~~~~~~~~~Htf~~t  209 (792)
T KOG1963|consen  161 QE-PKSIVDNNSGE------FKGIVHMCKIHIYFVPKHT------------------------KHTSSRDITVHHTFNIT  209 (792)
T ss_pred             cC-CccEEEcCCce------EEEEEEeeeEEEEEecccc------------------------eeeccchhhhhhcccce
Confidence            22 34567777774      5556667788888887631                        22333333445556689


Q ss_pred             EEEecCCCCEEEEEEcCCeEEEEECCC----ceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEE
Q 038577          269 ACDYHRGLDMVVVGFSNGVFGLYQMPD----FVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILK  344 (860)
Q Consensus       269 ~~~~~~~~~~l~~~~~~g~i~~~~~~~----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~  344 (860)
                      |.+++|.++++++|..+|.|.+|.--.    ....+.+.-|...|.+++|+++|.+|++++.+ |.+.+|.+.+++ ..-
T Consensus       210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E-~VLv~Wq~~T~~-kqf  287 (792)
T KOG1963|consen  210 CVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGRE-GVLVLWQLETGK-KQF  287 (792)
T ss_pred             eEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccc-eEEEEEeecCCC-ccc
Confidence            999999999999999999999997532    23446677788899999999999999999887 999999999988 444


Q ss_pred             ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeec-----------CCCceEEEEEeeCCCEEEEEeCCC
Q 038577          345 QQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTE-----------HTNAVTALHFMANNHSLLSASLDG  413 (860)
Q Consensus       345 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~v~~i~~~~~~~~l~s~~~dg  413 (860)
                      ++.-.++|..+.++||+...+....|+.|.+....+.....++.+           ..+-.+.++++|..+.++-.+..|
T Consensus       288 LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g  367 (792)
T KOG1963|consen  288 LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPG  367 (792)
T ss_pred             ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCc
Confidence            566778899999999999999999999999998866544444332           133467788899777889999999


Q ss_pred             cEEEEEccccceeeEeeCC----------CCCcEEEEEECCCCCEEEEEecC---------CCeEEEEECCCCceE----
Q 038577          414 TVRAWDLFRYRNFRTFTTP----------SSRQFVSLASDQSGEVICAGTLD---------SFEIFVWSMKTGRLL----  470 (860)
Q Consensus       414 ~i~~wd~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~---------~~~i~v~d~~~~~~~----  470 (860)
                      .|.+||+.+.+.+..+...          ....+++++.+..|.++++.-..         ...+++|-......-    
T Consensus       368 ~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~  447 (792)
T KOG1963|consen  368 HVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILN  447 (792)
T ss_pred             eEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEE
Confidence            9999999887766555421          11245667777888888876431         125777765543322    


Q ss_pred             -EEecCcccCeEEEEEcCC-C-CEEEEEeCCCcEEEEEccCCcce----------eEEcccCCCeEEEEEeeCCCEEEEE
Q 038577          471 -DILSGHEGPVHGLVFSPT-N-ATLASSSWDKTVRLWNVFEGKGS----------VESFPHTHDVLTVVYRPDGRQLACS  537 (860)
Q Consensus       471 -~~~~~h~~~v~~l~~s~~-~-~~l~s~~~dg~i~iwd~~~~~~~----------~~~~~~~~~v~~~~~s~~~~~l~~~  537 (860)
                       .....|...+...++.+. . ..+++++.||.+++|-+.+.+..          ..-.-|..++++++|+.||..|+++
T Consensus       448 T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s  527 (792)
T KOG1963|consen  448 TKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVS  527 (792)
T ss_pred             EEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEe
Confidence             223568777666666543 2 37999999999999998443311          1111378899999999999766655


Q ss_pred             eCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCC--CEEEEecCCCeEEEEECCCceE
Q 038577          538 TLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADG--SYILAGGSSKYICMYDVADQVL  615 (860)
Q Consensus       538 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g--~~l~~~~~dg~v~vwd~~~~~~  615 (860)
                       .+++|.+||..+...+....+....                   ++..++|....  ...+.....+.+.+|++-+..+
T Consensus       528 -~~~~Itiwd~~~~~~l~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l  587 (792)
T KOG1963|consen  528 -FDDTITIWDYDTKNELLCTEGSRNW-------------------PIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSL  587 (792)
T ss_pred             -cCCEEEEecCCChhhhhcccccccc-------------------chHhHhhhcccccccceeeccCceEehHhhhhhhe
Confidence             5789999999885333333332221                   23444443321  2233445678899999998877


Q ss_pred             EEE
Q 038577          616 LRR  618 (860)
Q Consensus       616 ~~~  618 (860)
                      ...
T Consensus       588 ~w~  590 (792)
T KOG1963|consen  588 IWN  590 (792)
T ss_pred             ecc
Confidence            763

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=2.4e-25  Score=213.58  Aligned_cols=282  Identities=20%  Similarity=0.262  Sum_probs=236.7

Q ss_pred             ccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCce---eEEEEee--cCceeEEEEEeeCCCEEEEEEccCCcEEEE
Q 038577          260 FSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFV---CIHLLSI--SREKITTAVFNELGNWLVFGCAKLGQLLVW  334 (860)
Q Consensus       260 ~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~---~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~  334 (860)
                      .-.|..-|.++.++...+++++|+ .|.|+|||+....   .+..+..  ...-|+++...|||+.|++++.. .++.||
T Consensus       415 tL~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGea-stlsiW  492 (705)
T KOG0639|consen  415 TLAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA-STLSIW  492 (705)
T ss_pred             hhccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccc-ceeeee
Confidence            345777888888998888888876 5679999996432   2223322  34568999999999999999885 899999


Q ss_pred             EccCceEEEEe--cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCC
Q 038577          335 EWRSESYILKQ--QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD  412 (860)
Q Consensus       335 d~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d  412 (860)
                      |+.......+.  ....-...+++.+||.+..+++..||.|.|||+.+...++.|.+|.+.+.||.+++||..|.+||-|
T Consensus       493 DLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlD  572 (705)
T KOG0639|consen  493 DLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLD  572 (705)
T ss_pred             eccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCc
Confidence            99876554333  3333457789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEE
Q 038577          413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATL  492 (860)
Q Consensus       413 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l  492 (860)
                      .+|+.||+++++........  .+|.++..+|.+.++++|..++ .+.+.... +.....+.-|.+-|.++.|.+.|+++
T Consensus       573 ntvRcWDlregrqlqqhdF~--SQIfSLg~cP~~dWlavGMens-~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwf  648 (705)
T KOG0639|consen  573 NTVRCWDLREGRQLQQHDFS--SQIFSLGYCPTGDWLAVGMENS-NVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWF  648 (705)
T ss_pred             cceeehhhhhhhhhhhhhhh--hhheecccCCCccceeeecccC-cEEEEecC-CccceeecccccEEEEEEecccCcee
Confidence            99999999998877665543  4789999999999999999998 88888765 44456667799999999999999999


Q ss_pred             EEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeC
Q 038577          493 ASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDP  548 (860)
Q Consensus       493 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  548 (860)
                      ++.+.|..+..|...-+..+.+. ...+.|.++.+|.|.+++++|+.|....||.+
T Consensus       649 vStGkDnlLnawrtPyGasiFqs-kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  649 VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             eecCchhhhhhccCccccceeec-cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            99999999999999888744433 45678999999999999999999988888865

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=3.1e-24  Score=214.71  Aligned_cols=282  Identities=22%  Similarity=0.336  Sum_probs=234.3

Q ss_pred             ceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEE--EecCcccCeEE-EEEcC-CCCEEEEEeCCC
Q 038577          296 FVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYIL--KQQGHYFDVNC-LAYSP-DSQLLATGADDN  371 (860)
Q Consensus       296 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~--~~~~~~~~v~~-~~~s~-~~~~l~~~~~dg  371 (860)
                      .+..+.+.+|...+..+++.+.. +++.++ +||++++|+-..+..+.  .+.+|.+-|.+ +++.+ ++..+++|+.|+
T Consensus         4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~s-Rd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~   81 (745)
T KOG0301|consen    4 YKLSHELEGHKSDVRAVAVTDGV-CIISGS-RDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT   81 (745)
T ss_pred             ceeEEEeccCccchheeEecCCe-EEeecC-CCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence            45567788899888888866544 555554 45999999987766554  34667777766 77775 455799999999


Q ss_pred             cEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEE
Q 038577          372 KVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICA  451 (860)
Q Consensus       372 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  451 (860)
                      .|.+|......++..+.+|.+.|.++....++. +++|+.|.++++|........   ..++...+.++..-|++ .+++
T Consensus        82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~---l~gH~asVWAv~~l~e~-~~vT  156 (745)
T KOG0301|consen   82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYS---LQGHTASVWAVASLPEN-TYVT  156 (745)
T ss_pred             eEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhcc---cCCcchheeeeeecCCC-cEEe
Confidence            999999999999999999999999999888876 999999999999987543322   44566788899888888 7779


Q ss_pred             EecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCC
Q 038577          452 GTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDG  531 (860)
Q Consensus       452 ~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  531 (860)
                      |+.|. .|++|.-  ++.++++.+|..-|+.+++-+++ .+++++.||.|+.|++ +++.+.+..+|..-+.++...+++
T Consensus       157 gsaDK-tIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~  231 (745)
T KOG0301|consen  157 GSADK-TIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSD  231 (745)
T ss_pred             ccCcc-eeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCC
Confidence            99999 9999985  78899999999999999999775 4889999999999999 777799999999999999988899


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECC
Q 038577          532 RQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVA  611 (860)
Q Consensus       532 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~  611 (860)
                      ..++++++|++++||+..  ++.+.+..+..                    .|+++++-++|. +++|++||.|+||...
T Consensus       232 ~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--------------------siWsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  232 GLIVSTGEDRTLRIWKKD--ECVQVITLPTT--------------------SIWSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             CeEEEecCCceEEEeecC--ceEEEEecCcc--------------------ceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence            999999999999999976  66666655432                    489999999887 6668899999999877


Q ss_pred             C
Q 038577          612 D  612 (860)
Q Consensus       612 ~  612 (860)
                      .
T Consensus       289 k  289 (745)
T KOG0301|consen  289 K  289 (745)
T ss_pred             c
Confidence            3

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=2.3e-23  Score=219.45  Aligned_cols=247  Identities=14%  Similarity=0.129  Sum_probs=195.1

Q ss_pred             EEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeC-CCEEEEEEccCCcEEEEEccCce--------EEEEecCcccCe
Q 038577          282 GFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNEL-GNWLVFGCAKLGQLLVWEWRSES--------YILKQQGHYFDV  352 (860)
Q Consensus       282 ~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~~~g~i~v~d~~~~~--------~~~~~~~~~~~v  352 (860)
                      |+..|.+.+|+......+..+..|...|.+++|+|+ +..+++++. ||.|++||+.++.        .+..+.+|...|
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~-DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V  128 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSE-DLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI  128 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeC-CCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence            556788999998887788889999999999999997 566666655 5999999997642        234567899999


Q ss_pred             EEEEEcCCCCE-EEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeC
Q 038577          353 NCLAYSPDSQL-LATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTT  431 (860)
Q Consensus       353 ~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~  431 (860)
                      .+++|+|++.. +++++.|+.|++||+.++.....+. |...|.+++|+|+|..|++++.|+.|++||+++++....+..
T Consensus       129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g  207 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI  207 (568)
T ss_pred             EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            99999999875 4789999999999999998877775 668899999999999999999999999999999988887766


Q ss_pred             CCCCc----EEEEEECCCCCEEEEEecCC---CeEEEEECCC-CceEEEec--CcccCeEEEEEcCCCCEEEEEeCCCcE
Q 038577          432 PSSRQ----FVSLASDQSGEVICAGTLDS---FEIFVWSMKT-GRLLDILS--GHEGPVHGLVFSPTNATLASSSWDKTV  501 (860)
Q Consensus       432 ~~~~~----~~~~~~~~~~~~l~~~~~~~---~~i~v~d~~~-~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~~dg~i  501 (860)
                      +....    +....+++++.++++++.++   .+|++||++. ++++..+.  .+.+.+......+++.++++|+.|+.|
T Consensus       208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tI  287 (568)
T PTZ00420        208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNC  287 (568)
T ss_pred             ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeE
Confidence            54321    22234568999999887764   2799999995 55665543  333444444455678999999999999


Q ss_pred             EEEEccCCcceeEEc--ccCCCeEEEEEeeCC
Q 038577          502 RLWNVFEGKGSVESF--PHTHDVLTVVYRPDG  531 (860)
Q Consensus       502 ~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~  531 (860)
                      ++|++..+. ...+.  .+..+..+++|.|..
T Consensus       288 r~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        288 RYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             EEEEccCCc-EEeecccccCCCccceEEcccc
Confidence            999998764 22222  366788899999964

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=8.9e-24  Score=191.27  Aligned_cols=269  Identities=17%  Similarity=0.258  Sum_probs=221.0

Q ss_pred             CCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEE
Q 038577          263 APSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYI  342 (860)
Q Consensus       263 ~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~  342 (860)
                      ....|..+.|+|.++.|++++.||.+++|+.+.......+ .+..++.+++|.+ ...+++++.+ |.|+.+|+.++...
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~d-g~vr~~Dln~~~~~   88 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLD-GQVRRYDLNTGNED   88 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccC-ceEEEEEecCCcce
Confidence            3467999999999999999999999999999877554444 3567999999987 4455566555 99999999988655


Q ss_pred             EEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccc
Q 038577          343 LKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFR  422 (860)
Q Consensus       343 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~  422 (860)
                      . +..|..+|+|+.+++....+++|+.|++|++||.+.......+. ....|.++...  ++.|+.|+.|..+.+||+++
T Consensus        89 ~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn  164 (323)
T KOG1036|consen   89 Q-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN  164 (323)
T ss_pred             e-eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence            4 45799999999999988899999999999999998755555554 34478888765  55899999999999999998


Q ss_pred             cceee-EeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCC----ceEEEecCcc---------cCeEEEEEcCC
Q 038577          423 YRNFR-TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTG----RLLDILSGHE---------GPVHGLVFSPT  488 (860)
Q Consensus       423 ~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~----~~~~~~~~h~---------~~v~~l~~s~~  488 (860)
                      ..... .....-..++.++++-|++.-.++++-+| .|.+=.++..    +....|+.|.         -||++|+|+|-
T Consensus       165 ~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieG-RVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~  243 (323)
T KOG1036|consen  165 LDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEG-RVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI  243 (323)
T ss_pred             ccchhhhccccceeEEEEEEEecCCCceEEEeecc-eEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence            76543 22334455788999999988899999998 8887766655    3445566664         37999999999


Q ss_pred             CCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeC
Q 038577          489 NATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTL  539 (860)
Q Consensus       489 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  539 (860)
                      ...||||+.||.|.+||+.+.+.+.++......|.+++|+.||..||+++.
T Consensus       244 ~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  244 HGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             cceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            999999999999999999999888888888888999999999999999974

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=1.6e-23  Score=189.70  Aligned_cols=270  Identities=13%  Similarity=0.150  Sum_probs=221.3

Q ss_pred             CccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccce
Q 038577           51 SSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFA  130 (860)
Q Consensus        51 h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~  130 (860)
                      -...|+.+.|+|.+..|++++-||++++||+........++|..++.+++|.++.+.+..+.|+.|+.+|+.++.     
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~-----   86 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGN-----   86 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCc-----
Confidence            457799999999999999999999999999999999999999999999999987766666699999999999987     


Q ss_pred             eEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEE
Q 038577          131 FELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIY  210 (860)
Q Consensus       131 ~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~  210 (860)
                         ...+..|...|.|+.+++....+++|+-|++|++||....      .....+. ....|.++....  .     .|+
T Consensus        87 ---~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~------~~~~~~d-~~kkVy~~~v~g--~-----~Lv  149 (323)
T KOG1036|consen   87 ---EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK------VVVGTFD-QGKKVYCMDVSG--N-----RLV  149 (323)
T ss_pred             ---ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc------ccccccc-cCceEEEEeccC--C-----EEE
Confidence               3667889999999999998889999999999999999864      2222222 233777776654  3     899


Q ss_pred             EEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEE
Q 038577          211 TIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGL  290 (860)
Q Consensus       211 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~  290 (860)
                      .++.|..+.+||+.......                          ...-..-.-.+.|+++-|++.-.++++-+|.|.+
T Consensus       150 Vg~~~r~v~iyDLRn~~~~~--------------------------q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVav  203 (323)
T KOG1036|consen  150 VGTSDRKVLIYDLRNLDEPF--------------------------QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAV  203 (323)
T ss_pred             EeecCceEEEEEcccccchh--------------------------hhccccceeEEEEEEEecCCCceEEEeecceEEE
Confidence            99999999999998753310                          1111123346899999999999999999999988


Q ss_pred             EECCCc----eeEEEEeecC---------ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEE
Q 038577          291 YQMPDF----VCIHLLSISR---------EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAY  357 (860)
Q Consensus       291 ~~~~~~----~~~~~~~~~~---------~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~  357 (860)
                      =..+..    +....++.|.         .+|.+++|+|--..+++++++ |.|.+||+.+.+.+..+......|.+++|
T Consensus       204 E~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsD-G~V~~Wd~~~rKrl~q~~~~~~SI~slsf  282 (323)
T KOG1036|consen  204 EYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSD-GIVNIWDLFNRKRLKQLAKYETSISSLSF  282 (323)
T ss_pred             EccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCC-ceEEEccCcchhhhhhccCCCCceEEEEe
Confidence            666544    2334444443         378999999998899998887 99999999999998888777778999999


Q ss_pred             cCCCCEEEEEeC
Q 038577          358 SPDSQLLATGAD  369 (860)
Q Consensus       358 s~~~~~l~~~~~  369 (860)
                      +.+|..||+++.
T Consensus       283 s~dG~~LAia~s  294 (323)
T KOG1036|consen  283 SMDGSLLAIASS  294 (323)
T ss_pred             ccCCCeEEEEec
Confidence            999999999875

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=2.6e-24  Score=211.21  Aligned_cols=325  Identities=18%  Similarity=0.209  Sum_probs=237.7

Q ss_pred             eeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCC--CEEEEEeCCeEEEEeCCC
Q 038577           46 TLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNG--KYIAVGTGKLVQIWRSPG  123 (860)
Q Consensus        46 ~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg--~~la~~~~~~i~iwd~~~  123 (860)
                      ....||++.|.++...|.|.+||+|+.||+|+||.+.+|.+++++...+.|.|++|+|.+  ..||++.+..+.|-+..-
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~  473 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF  473 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence            345599999999999999999999999999999999999999999999999999999976  567777666666666543


Q ss_pred             CCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEe----ecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEcc
Q 038577          124 FKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVG----SKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSV  199 (860)
Q Consensus       124 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~----~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~  199 (860)
                      |...            +.+        +....|+++    ..++.+..|.-....+.  ...+.....|...|..+.|+.
T Consensus       474 G~~~------------e~~--------~t~ell~~~~~~~~p~~~~~~W~~~~~~e~--~~~v~~~I~~~k~i~~vtWHr  531 (733)
T KOG0650|consen  474 GDRL------------EVG--------PTKELLASAPNESEPDAAVVTWSRASLDEL--EKGVCIVIKHPKSIRQVTWHR  531 (733)
T ss_pred             cchh------------hhc--------chhhhhhcCCCccCCcccceeechhhhhhh--ccceEEEEecCCccceeeeec
Confidence            3210            000        011122222    23456777765533111  011233344455555555555


Q ss_pred             CCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEE
Q 038577          200 DKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMV  279 (860)
Q Consensus       200 ~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  279 (860)
                      .|.     +|++...++                                                               
T Consensus       532 kGD-----YlatV~~~~---------------------------------------------------------------  543 (733)
T KOG0650|consen  532 KGD-----YLATVMPDS---------------------------------------------------------------  543 (733)
T ss_pred             CCc-----eEEEeccCC---------------------------------------------------------------
Confidence            554     444443221                                                               


Q ss_pred             EEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcC
Q 038577          280 VVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSP  359 (860)
Q Consensus       280 ~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~  359 (860)
                          .+..|.|+++........++...+.+.++.|+|...++++++.  ..|++||+..+..+.++......|..++++|
T Consensus       544 ----~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq--~~vRiYdL~kqelvKkL~tg~kwiS~msihp  617 (733)
T KOG0650|consen  544 ----GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ--RSVRIYDLSKQELVKKLLTGSKWISSMSIHP  617 (733)
T ss_pred             ----CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec--cceEEEehhHHHHHHHHhcCCeeeeeeeecC
Confidence                1245666666655555556666678889999999999988876  6999999998887777766677899999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCC-CeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEE
Q 038577          360 DSQLLATGADDNKVKVWTVSS-GFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFV  438 (860)
Q Consensus       360 ~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  438 (860)
                      .|..|+.|+.|+.+..||+.- .++.+++..|...+++++|++.-..+++|+.||++.+|.-.-..              
T Consensus       618 ~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~--------------  683 (733)
T KOG0650|consen  618 NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYN--------------  683 (733)
T ss_pred             CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeeh--------------
Confidence            999999999999999999984 46777888899999999999999999999999999987531100              


Q ss_pred             EEEECCCCCEEEEEecCCCeEEEEECC-C--CceEEEecCcccC----eEEEEEcCCCCEEEEEeCCCcEEEE
Q 038577          439 SLASDQSGEVICAGTLDSFEIFVWSMK-T--GRLLDILSGHEGP----VHGLVFSPTNATLASSSWDKTVRLW  504 (860)
Q Consensus       439 ~~~~~~~~~~l~~~~~~~~~i~v~d~~-~--~~~~~~~~~h~~~----v~~l~~s~~~~~l~s~~~dg~i~iw  504 (860)
                                              |+- +  --++..+++|...    |.+..|+|...+|++++.||+|++|
T Consensus       684 ------------------------Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  684 ------------------------DLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             ------------------------hhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence                                    000 0  1145666777655    8899999999999999999999998

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.2e-23  Score=190.27  Aligned_cols=282  Identities=14%  Similarity=0.262  Sum_probs=224.5

Q ss_pred             eEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEee
Q 038577          309 ITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFT  388 (860)
Q Consensus       309 i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  388 (860)
                      ..++.|++.|.++++++.+ |.+.|||+.+...-..+.+|..+|++++||+||+.|++++.|..|.+||+..|.++..+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~n-G~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCAN-GRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR  104 (405)
T ss_pred             cceEEeccCcceeeeeccC-CcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence            6899999999999999988 999999999998888889999999999999999999999999999999999999988886


Q ss_pred             cCCCceEEEEEeeCCC-EEEEEeCCCcEEEEEccccceeeEeeCCCCC----cEEEEEECCCCCEEEEEecCCCeEEEEE
Q 038577          389 EHTNAVTALHFMANNH-SLLSASLDGTVRAWDLFRYRNFRTFTTPSSR----QFVSLASDQSGEVICAGTLDSFEIFVWS  463 (860)
Q Consensus       389 ~~~~~v~~i~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~i~v~d  463 (860)
                       ..++|+.+.|+|..+ ..++.-.+..-.+-++...+. ..++.....    ...+..|++.|+++++|...| .+.+||
T Consensus       105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKG-kllv~~  181 (405)
T KOG1273|consen  105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKG-KLLVYD  181 (405)
T ss_pred             -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcc-eEEEEe
Confidence             688999999999653 344443444455555554222 222222211    122346899999999999998 999999


Q ss_pred             CCCCceEEEecCcc-cCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcce-----e----EEc--ccCCCeEEEEEeeCC
Q 038577          464 MKTGRLLDILSGHE-GPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGS-----V----ESF--PHTHDVLTVVYRPDG  531 (860)
Q Consensus       464 ~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-----~----~~~--~~~~~v~~~~~s~~~  531 (860)
                      ..+.+++..++-.. ..|.++.++..|+.|+.-+.|+.||.|++..-...     .    ++.  .....-.+++||.+|
T Consensus       182 a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg  261 (405)
T KOG1273|consen  182 AETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG  261 (405)
T ss_pred             cchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc
Confidence            99999998887665 78999999999999999999999999998632111     0    111  123344678999999


Q ss_pred             CEEEEEeCC-CeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEEC
Q 038577          532 RQLACSTLD-GQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV  610 (860)
Q Consensus       532 ~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~  610 (860)
                      .|++.++.. ..++||.-..|.+++.+.|.++.                   ....+.|.|-...+++. ..|.|++|..
T Consensus       262 eYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-------------------~l~DV~whp~rp~i~si-~sg~v~iw~~  321 (405)
T KOG1273|consen  262 EYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-------------------ELLDVNWHPVRPIIASI-ASGVVYIWAV  321 (405)
T ss_pred             cEEEeccccceeEEEEecCCcceeeeecCCchh-------------------heeecccccceeeeeec-cCCceEEEEe
Confidence            999888743 45999999999999999988742                   46788899988888877 7899999987


Q ss_pred             CCce
Q 038577          611 ADQV  614 (860)
Q Consensus       611 ~~~~  614 (860)
                      ..-+
T Consensus       322 ~~~e  325 (405)
T KOG1273|consen  322 VQVE  325 (405)
T ss_pred             eccc
Confidence            6543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=4.2e-23  Score=213.65  Aligned_cols=273  Identities=21%  Similarity=0.246  Sum_probs=225.2

Q ss_pred             CCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCc-eeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce
Q 038577          262 QAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDF-VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES  340 (860)
Q Consensus       262 ~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~  340 (860)
                      .|....+.++|.|+|+.+++++.||.|++|+..+. +....+..+...+.+++..  +..+++++.+ ++|.+|...++.
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~-~tv~~y~fps~~   87 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQ-NTVLRYKFPSGE   87 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeecc-ceEEEeeCCCCC
Confidence            56677999999999999999999999999998766 4445454455566666654  4467766665 999999998887


Q ss_pred             EEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 038577          341 YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDL  420 (860)
Q Consensus       341 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~  420 (860)
                      .-..+....-++++++++.+|+++|.|+.|-.|++.++.+......+.+|..+|.++.|+|++.+|++.+.||.|++||+
T Consensus        88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~  167 (933)
T KOG1274|consen   88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL  167 (933)
T ss_pred             ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence            66555556678999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceeeEeeC-------CCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC--cccCeEEEEEcCCCCE
Q 038577          421 FRYRNFRTFTT-------PSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG--HEGPVHGLVFSPTNAT  491 (860)
Q Consensus       421 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~--h~~~v~~l~~s~~~~~  491 (860)
                      .++.....+..       .....+..++|+|+|..+++.+.++ .|.+|+..+++....+..  +...+.+++|+|+|+|
T Consensus       168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~-~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y  246 (933)
T KOG1274|consen  168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN-TVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY  246 (933)
T ss_pred             ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC-eEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence            98877665542       2234567799999988888888888 999999999988877753  4555999999999999


Q ss_pred             EEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCe
Q 038577          492 LASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQ  542 (860)
Q Consensus       492 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  542 (860)
                      ||+++.||.|.|||+++.+.    ......|.+++|.|+..-+-.....|.
T Consensus       247 iAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~  293 (933)
T KOG1274|consen  247 IAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGT  293 (933)
T ss_pred             EeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccc
Confidence            99999999999999987332    345567899999998776544443343

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=2.1e-23  Score=199.17  Aligned_cols=276  Identities=20%  Similarity=0.335  Sum_probs=211.5

Q ss_pred             EeeccCCCeEEEEEcCCC-CeEEEeecCCeEEEEeecccccCc----ccccceEeecCCCcEEEEEEccCCCCCccceEE
Q 038577          136 TLADCNDKVTALNWSPDS-NYLLVGSKDLAVRLFYVKEKLKGI----HTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIY  210 (860)
Q Consensus       136 ~~~~h~~~v~~l~~s~d~-~~l~s~~~dg~v~vwd~~~~~~~~----~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~  210 (860)
                      ....|.+.|+.+.+.|.. ..+|+.+..+.|.|||........    .......+.+|.+.-.+++|++....    +++
T Consensus       119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g----~Ll  194 (422)
T KOG0264|consen  119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG----TLL  194 (422)
T ss_pred             EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce----eEe
Confidence            334699999999999977 566677888999999998762221    11233588999998788999887664    899


Q ss_pred             EEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEE
Q 038577          211 TIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGL  290 (860)
Q Consensus       211 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~  290 (860)
                      +++.|+++++||+......                                              +              
T Consensus       195 s~~~d~~i~lwdi~~~~~~----------------------------------------------~--------------  214 (422)
T KOG0264|consen  195 SGSDDHTICLWDINAESKE----------------------------------------------D--------------  214 (422)
T ss_pred             eccCCCcEEEEeccccccC----------------------------------------------C--------------
Confidence            9999999999998863210                                              0              


Q ss_pred             EECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc--CceEEEEecCcccCeEEEEEcC-CCCEEEEE
Q 038577          291 YQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR--SESYILKQQGHYFDVNCLAYSP-DSQLLATG  367 (860)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~--~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~  367 (860)
                         +.......+..|...|..++|++-...++.+.++|+.+.|||++  +.+......+|.++|.|++|+| ++..||+|
T Consensus       215 ---~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~  291 (422)
T KOG0264|consen  215 ---KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATG  291 (422)
T ss_pred             ---ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEec
Confidence               01122334556777888888888888888888888999999999  4555666688999999999999 56688999


Q ss_pred             eCCCcEEEEECCCC-eeEEEeecCCCceEEEEEeeCC-CEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCC
Q 038577          368 ADDNKVKVWTVSSG-FCFVTFTEHTNAVTALHFMANN-HSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQS  445 (860)
Q Consensus       368 ~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (860)
                      +.|++|.+||+++- .++..+.+|...|..+.|+|.. ..|++++.|+.+.+||+..-...+.....             
T Consensus       292 S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda-------------  358 (422)
T KOG0264|consen  292 SADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA-------------  358 (422)
T ss_pred             cCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhh-------------
Confidence            99999999999864 5778899999999999999975 67889999999999998653322210000             


Q ss_pred             CCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCE-EEEEeCCCcEEEEEccC
Q 038577          446 GEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNAT-LASSSWDKTVRLWNVFE  508 (860)
Q Consensus       446 ~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~-l~s~~~dg~i~iwd~~~  508 (860)
                              .++         ..+++..-.||...|..+.|+|+..+ +++++.|+.+.||.+..
T Consensus       359 --------~dg---------ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  359 --------EDG---------PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             --------ccC---------CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence                    010         12344555689999999999998876 77889999999999753

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=9.4e-24  Score=184.08  Aligned_cols=245  Identities=14%  Similarity=0.190  Sum_probs=195.4

Q ss_pred             CcEEEe-CCCEEEee-eCCeEEEEECCCCcE---EeeccCCccCeeEEEEcC--CCCEEEEEcCCCcEEEEEcccCeEEE
Q 038577           16 GNAVLS-QNTKLISP-VGNRVSVTDLIKSKT---VTLPVESSSNICRIAVSP--DGTFLLTVDENQRCHFINLHCHVVLH   88 (860)
Q Consensus        16 ~~~~~s-dg~~l~~~-~~~~i~v~d~~~~~~---~~~~~~h~~~v~~va~sp--dg~~la~~~~d~~i~vwd~~~~~~~~   88 (860)
                      +.+.+. -|++||++ +|+.|+|+.++++.+   ...+.||.++|..++|..  -|.+||+++.||.|+||.-++|+--.
T Consensus        15 Hda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k   94 (299)
T KOG1332|consen   15 HDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTK   94 (299)
T ss_pred             hHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhh
Confidence            345566 88999987 578899999987654   566789999999999986  89999999999999999988874332


Q ss_pred             Ee--e-cCCceeEEEECCC--CCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCC---C------
Q 038577           89 RV--R-FKYPVNAILFSPN--GKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPD---S------  153 (860)
Q Consensus        89 ~~--~-~~~~v~~~~fspd--g~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d---~------  153 (860)
                      ..  . |...|++++|.|.  |-.||++ +||.|.|.+..+...    +........|.-.|++++|.|-   |      
T Consensus        95 ~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~----w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~  170 (299)
T KOG1332|consen   95 AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG----WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQG  170 (299)
T ss_pred             hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC----ccchhhhhccccccceeeecCcCCCccccccC
Confidence            22  2 8999999999995  4677777 899999998876521    1123456789999999999985   4      


Q ss_pred             -----CeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCC
Q 038577          154 -----NYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDG  228 (860)
Q Consensus       154 -----~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~  228 (860)
                           +.|++|+.|..|+||+.+.+ +-   .....+.+|.+.|+.++|.|.-.. ...+|++++.||++.+|..+... 
T Consensus       171 ~~~~~krlvSgGcDn~VkiW~~~~~-~w---~~e~~l~~H~dwVRDVAwaP~~gl-~~s~iAS~SqDg~viIwt~~~e~-  244 (299)
T KOG1332|consen  171 PAAKVKRLVSGGCDNLVKIWKFDSD-SW---KLERTLEGHKDWVRDVAWAPSVGL-PKSTIASCSQDGTVIIWTKDEEY-  244 (299)
T ss_pred             cccccceeeccCCccceeeeecCCc-ch---hhhhhhhhcchhhhhhhhccccCC-CceeeEEecCCCcEEEEEecCcc-
Confidence                 56999999999999999986 33   345669999999999999997632 22289999999999999887432 


Q ss_pred             CCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECC
Q 038577          229 KIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMP  294 (860)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~  294 (860)
                                           ..|..   ..+...+..+..+.|++.|+.|++++.|+.+.+|.-.
T Consensus       245 ---------------------e~wk~---tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  245 ---------------------EPWKK---TLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             ---------------------Ccccc---cccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence                                 24533   3333456679999999999999999999999999764

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=3.7e-23  Score=203.28  Aligned_cols=329  Identities=13%  Similarity=0.195  Sum_probs=252.6

Q ss_pred             ceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEc
Q 038577          247 RRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCA  326 (860)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  326 (860)
                      .+++.+.......+.+|.+.|.++...|.|.+|++|+.||++++|.+.++.++....... .|.+++|+|.+..-+.+..
T Consensus       383 ~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~-~I~~vaw~P~~~~~vLAvA  461 (733)
T KOG0650|consen  383 KDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS-EIRSVAWNPLSDLCVLAVA  461 (733)
T ss_pred             hhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc-eeEEEEecCCCCceeEEEE
Confidence            344555555667788999999999999999999999999999999999999999887664 8999999998865444433


Q ss_pred             cCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEE----eCCCcEEEEECCCC----eeEEEeecCCCceEEEE
Q 038577          327 KLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATG----ADDNKVKVWTVSSG----FCFVTFTEHTNAVTALH  398 (860)
Q Consensus       327 ~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~i~  398 (860)
                      ....+.+.+..-|..+...             +....|+.+    ..++.+..|.-...    .-+.....|...|..+.
T Consensus       462 ~~~~~~ivnp~~G~~~e~~-------------~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vt  528 (733)
T KOG0650|consen  462 VGECVLIVNPIFGDRLEVG-------------PTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVT  528 (733)
T ss_pred             ecCceEEeCccccchhhhc-------------chhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceee
Confidence            3345666654444221110             011112221    23556777865421    11344556899999999


Q ss_pred             EeeCCCEEEEEeCCC---cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC
Q 038577          399 FMANNHSLLSASLDG---TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG  475 (860)
Q Consensus       399 ~~~~~~~l~s~~~dg---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~  475 (860)
                      |+..|.+|++...++   .|.++++...+....|.. ....+.++.|+|...++++++..  .|++||+..+++++.+..
T Consensus       529 WHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~k-skG~vq~v~FHPs~p~lfVaTq~--~vRiYdL~kqelvKkL~t  605 (733)
T KOG0650|consen  529 WHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRK-SKGLVQRVKFHPSKPYLFVATQR--SVRIYDLSKQELVKKLLT  605 (733)
T ss_pred             eecCCceEEEeccCCCcceEEEEecccccccCchhh-cCCceeEEEecCCCceEEEEecc--ceEEEehhHHHHHHHHhc
Confidence            999999999887653   688899877666544433 34578999999999999999988  699999999988888887


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcce-eEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCC----
Q 038577          476 HEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGS-VESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLN----  550 (860)
Q Consensus       476 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~----  550 (860)
                      ....|..++.+|.|.-|+.++.|+.+..+|+.-.... ..+.-|...+++++|++.-.++++|+.||++.||.-.-    
T Consensus       606 g~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl  685 (733)
T KOG0650|consen  606 GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDL  685 (733)
T ss_pred             CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhh
Confidence            8889999999999999999999999999999766433 44556999999999999999999999999999985321    


Q ss_pred             --C---ceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEE
Q 038577          551 --G---ELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMY  608 (860)
Q Consensus       551 --~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw  608 (860)
                        .   -++..+++|...                ....|...+|.|...||++++.||+|++|
T Consensus       686 ~qnpliVPlK~L~gH~~~----------------~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  686 LQNPLIVPLKRLRGHEKT----------------NDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             hcCCceEeeeeccCceee----------------cccceEeecccCCCceEEecCCCceEEee
Confidence              1   234556666542                12358889999999999999999999998

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=2.8e-22  Score=179.65  Aligned_cols=298  Identities=21%  Similarity=0.332  Sum_probs=230.8

Q ss_pred             ccccCCCCceEEEEecC-CCCEEEEEEcCCeEEEEECCCce------------eE---EEEeecCceeEEEEEeeCCCEE
Q 038577          258 DDFSQAPSKVTACDYHR-GLDMVVVGFSNGVFGLYQMPDFV------------CI---HLLSISREKITTAVFNELGNWL  321 (860)
Q Consensus       258 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~~g~i~~~~~~~~~------------~~---~~~~~~~~~i~~~~~s~~~~~l  321 (860)
                      .....|.+.|.++.+.+ .|+++++|+.||.|.+||+++..            ++   ..-..|.-.|..+.|-|-..-+
T Consensus        37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm  116 (397)
T KOG4283|consen   37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM  116 (397)
T ss_pred             ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence            33456889999999987 58899999999999999997533            11   1122355679999999988888


Q ss_pred             EEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEE
Q 038577          322 VFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPD---SQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALH  398 (860)
Q Consensus       322 ~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~  398 (860)
                      +++++-|.++++||..+-+....+. ..+.|.+-+++|-   ..++|+|..+-.|++-|+.+|.....+.+|.+.|.++.
T Consensus       117 FtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~  195 (397)
T KOG4283|consen  117 FTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE  195 (397)
T ss_pred             eecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence            8888888999999999987776664 3456777788873   34788899999999999999999999999999999999


Q ss_pred             EeeCCCE-EEEEeCCCcEEEEEcccc-ceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCc---eEEEe
Q 038577          399 FMANNHS-LLSASLDGTVRAWDLFRY-RNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGR---LLDIL  473 (860)
Q Consensus       399 ~~~~~~~-l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~---~~~~~  473 (860)
                      |+|...+ |++|+.||.+++||++.. .+.                                 .+.|...++   .++.-
T Consensus       196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf---------------------------------~~lD~hn~k~~p~~~~n  242 (397)
T KOG4283|consen  196 WSPSSEWVLATGSADGAIRLWDIRRASGCF---------------------------------RVLDQHNTKRPPILKTN  242 (397)
T ss_pred             eccCceeEEEecCCCceEEEEEeeccccee---------------------------------EEeecccCccCcccccc
Confidence            9998764 679999999999999753 222                                 233332222   12233


Q ss_pred             cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcc---cCCC---eEEEEEeeCCCEEEEEeCCCeEEEEe
Q 038577          474 SGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFP---HTHD---VLTVVYRPDGRQLACSTLDGQIHFWD  547 (860)
Q Consensus       474 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~---v~~~~~s~~~~~l~~~~~dg~i~iwd  547 (860)
                      ..|.+.|.+++|+.++.++++++.|..+++|+..+++......+   |...   -..+. +-+...++---.++.+.++.
T Consensus       243 ~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~  321 (397)
T KOG4283|consen  243 TAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLN  321 (397)
T ss_pred             ccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEE
Confidence            46999999999999999999999999999999988874433221   1111   11122 33344444444568899999


Q ss_pred             CCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEEC
Q 038577          548 PLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV  610 (860)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~  610 (860)
                      +-+|..+..+.+|-.                    .|.+.++.|+=+...+|+.|+.|..|-.
T Consensus       322 ~~sgs~ir~l~~h~k--------------------~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  322 LLEGSFVRRLSTHLK--------------------RINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             ccCceEEEeeecccc--------------------eeeEEeecCchhhhhccccCCccccccc
Confidence            999999999998843                    5999999999999999999999999976

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=7e-22  Score=177.13  Aligned_cols=302  Identities=16%  Similarity=0.226  Sum_probs=230.1

Q ss_pred             EeecCCCcEEEEEEccC-CCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccC
Q 038577          184 LLLGHRDSVVGCFFSVD-KKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQ  262 (860)
Q Consensus       184 ~~~~h~~~i~~~~~~~~-~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (860)
                      ....|.+.|+++.+.+. ++     ++++|+.||.+.+||++.......           .  .-..+.-.+..+....+
T Consensus        38 ~~r~HgGsvNsL~id~tegr-----ymlSGgadgsi~v~Dl~n~t~~e~-----------s--~li~k~~c~v~~~h~~~   99 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLTEGR-----YMLSGGADGSIAVFDLQNATDYEA-----------S--GLIAKHKCIVAKQHENG   99 (397)
T ss_pred             eeccCCCccceeeeccccce-----EEeecCCCccEEEEEeccccchhh-----------c--cceeheeeeccccCCcc
Confidence            34568899999988764 44     999999999999999987432000           0  00011112233455567


Q ss_pred             CCCceEEEEecCC-CCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCC--CEEEEEEccCCcEEEEEccCc
Q 038577          263 APSKVTACDYHRG-LDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELG--NWLVFGCAKLGQLLVWEWRSE  339 (860)
Q Consensus       263 ~~~~v~~~~~~~~-~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~~~g~i~v~d~~~~  339 (860)
                      |.-.|..+.|-|- ..++.+++.|..+++||..+.+....+... +.|.+-+++|-.  ..|++++.++.+|++-|+.+|
T Consensus       100 Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me-~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG  178 (397)
T KOG4283|consen  100 HKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKME-GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG  178 (397)
T ss_pred             ceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecC-ceeehhhcChhhhcceEEEEecCCCcEEEEeccCC
Confidence            8888999999984 557778999999999999998888777654 478888888754  567777777799999999999


Q ss_pred             eEEEEecCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCC-eeEEE--------------eecCCCceEEEEEeeCC
Q 038577          340 SYILKQQGHYFDVNCLAYSPDSQ-LLATGADDNKVKVWTVSSG-FCFVT--------------FTEHTNAVTALHFMANN  403 (860)
Q Consensus       340 ~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~-~~~~~--------------~~~~~~~v~~i~~~~~~  403 (860)
                      .....+.+|...|.++.|+|... .|++|+.||.|++||++.. .+...              -..|.+.|.+++|+.++
T Consensus       179 s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~  258 (397)
T KOG4283|consen  179 SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA  258 (397)
T ss_pred             cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc
Confidence            99999999999999999999876 5688999999999999743 23222              23577889999999999


Q ss_pred             CEEEEEeCCCcEEEEEccccceeeEeeCC-----CCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCccc
Q 038577          404 HSLLSASLDGTVRAWDLFRYRNFRTFTTP-----SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEG  478 (860)
Q Consensus       404 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~  478 (860)
                      .++++++.|..+++|+..+++....-..+     ....-..+. +.+...++.--.++ .+.++++-++..++.+.+|..
T Consensus       259 ~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~-~lall~~~sgs~ir~l~~h~k  336 (397)
T KOG4283|consen  259 RYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDG-SLALLNLLEGSFVRRLSTHLK  336 (397)
T ss_pred             hhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCC-eEEEEEccCceEEEeeecccc
Confidence            99999999999999999887643221111     000111122 33333343333444 899999999999999999999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 038577          479 PVHGLVFSPTNATLASSSWDKTVRLWNV  506 (860)
Q Consensus       479 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~  506 (860)
                      .|.+.++.|+-+...+++.|+.|..|-.
T Consensus       337 ~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  337 RINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             eeeEEeecCchhhhhccccCCccccccc
Confidence            9999999999999999999999999986

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=6.7e-22  Score=179.04  Aligned_cols=283  Identities=13%  Similarity=0.209  Sum_probs=224.9

Q ss_pred             EEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEE
Q 038577          192 VVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACD  271 (860)
Q Consensus       192 i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  271 (860)
                      -.++.|++.|.     +|++|+.||.+.+||+.+..                            ....+.+|..+|++++
T Consensus        26 a~~~~Fs~~G~-----~lAvGc~nG~vvI~D~~T~~----------------------------iar~lsaH~~pi~sl~   72 (405)
T KOG1273|consen   26 AECCQFSRWGD-----YLAVGCANGRVVIYDFDTFR----------------------------IARMLSAHVRPITSLC   72 (405)
T ss_pred             cceEEeccCcc-----eeeeeccCCcEEEEEccccc----------------------------hhhhhhccccceeEEE
Confidence            67899999999     99999999999999998742                            2456778899999999


Q ss_pred             ecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcc--
Q 038577          272 YHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHY--  349 (860)
Q Consensus       272 ~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~--  349 (860)
                      |+++|+.|++++.|..|.+||+..+.+++.++.. .+|..+.|+|-....++++--+..-.+-+...+..........  
T Consensus        73 WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~-spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~d  151 (405)
T KOG1273|consen   73 WSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD-SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGD  151 (405)
T ss_pred             ecCCCCEeeeecCCceeEEEeccCCCceeEEEcc-CccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccc
Confidence            9999999999999999999999999988888765 5899999999766555554333334444444322211111111  


Q ss_pred             --cCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCC-CceEEEEEeeCCCEEEEEeCCCcEEEEEcccccee
Q 038577          350 --FDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHT-NAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNF  426 (860)
Q Consensus       350 --~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~  426 (860)
                        ....+..|.+.|+++++|...|.+.+++..+.+++..++... ..|..+.++..|+.++.-+.|+.|+.|++..-...
T Consensus       152 ln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~  231 (405)
T KOG1273|consen  152 LNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE  231 (405)
T ss_pred             cccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhccc
Confidence              112334688999999999999999999999999999887766 78999999999999999999999999998632111


Q ss_pred             ---------eEe-eCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcc-cCeEEEEEcCCCCEEEEE
Q 038577          427 ---------RTF-TTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHE-GPVHGLVFSPTNATLASS  495 (860)
Q Consensus       427 ---------~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~  495 (860)
                               ..+ ..-...+..+++|+.+|.++++++...+.+++|....|.+++.+.|.. ....++.|+|-...+++-
T Consensus       232 ~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si  311 (405)
T KOG1273|consen  232 GRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI  311 (405)
T ss_pred             CccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec
Confidence                     111 011233567899999999999999888899999999999999999887 567789999998888887


Q ss_pred             eCCCcEEEEEccCC
Q 038577          496 SWDKTVRLWNVFEG  509 (860)
Q Consensus       496 ~~dg~i~iwd~~~~  509 (860)
                       ..|.+++|.....
T Consensus       312 -~sg~v~iw~~~~~  324 (405)
T KOG1273|consen  312 -ASGVVYIWAVVQV  324 (405)
T ss_pred             -cCCceEEEEeecc
Confidence             6889999987544

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=6.3e-23  Score=178.98  Aligned_cols=252  Identities=16%  Similarity=0.224  Sum_probs=203.9

Q ss_pred             EEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEcc--CCCCCccceEEEE
Q 038577          135 RTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSV--DKKTDKVNRIYTI  212 (860)
Q Consensus       135 ~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~--~~~~~~~~~l~s~  212 (860)
                      ..-..|.+.|..+...--|++||+++.|++|+|+.......   ......|.||.++|+.++|..  -|.     .|+++
T Consensus         5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~---s~ll~~L~Gh~GPVwqv~wahPk~G~-----iLASc   76 (299)
T KOG1332|consen    5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ---SKLLAELTGHSGPVWKVAWAHPKFGT-----ILASC   76 (299)
T ss_pred             ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC---ceeeeEecCCCCCeeEEeecccccCc-----EeeEe
Confidence            34467999999988888899999999999999999987732   256789999999999999966  566     99999


Q ss_pred             cCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCC--CCEEEEEEcCCeEEE
Q 038577          213 ARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRG--LDMVVVGFSNGVFGL  290 (860)
Q Consensus       213 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~g~i~~  290 (860)
                      +.||.|.+|.-+++.                        |  .+......|...|.+++|.|.  |-.|++++.||.|.+
T Consensus        77 sYDgkVIiWke~~g~------------------------w--~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsv  130 (299)
T KOG1332|consen   77 SYDGKVIIWKEENGR------------------------W--TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSV  130 (299)
T ss_pred             ecCceEEEEecCCCc------------------------h--hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEE
Confidence            999999999887753                        3  234556778899999999986  567899999999999


Q ss_pred             EECCCc---eeEEEEeecCceeEEEEEeeC---C-----------CEEEEEEccCCcEEEEEccCceE--EEEecCcccC
Q 038577          291 YQMPDF---VCIHLLSISREKITTAVFNEL---G-----------NWLVFGCAKLGQLLVWEWRSESY--ILKQQGHYFD  351 (860)
Q Consensus       291 ~~~~~~---~~~~~~~~~~~~i~~~~~s~~---~-----------~~l~~~~~~~g~i~v~d~~~~~~--~~~~~~~~~~  351 (860)
                      ++..+.   ........|.-.+++++|.|.   |           +.|++++.+ ..|+||+..++..  ...+.+|.+-
T Consensus       131 l~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcD-n~VkiW~~~~~~w~~e~~l~~H~dw  209 (299)
T KOG1332|consen  131 LTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCD-NLVKIWKFDSDSWKLERTLEGHKDW  209 (299)
T ss_pred             EEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCc-cceeeeecCCcchhhhhhhhhcchh
Confidence            988654   223445667788999999986   4           457777665 9999999988643  3346899999


Q ss_pred             eEEEEEcCCC----CEEEEEeCCCcEEEEECCCC---eeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcc
Q 038577          352 VNCLAYSPDS----QLLATGADDNKVKVWTVSSG---FCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLF  421 (860)
Q Consensus       352 v~~~~~s~~~----~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~  421 (860)
                      |+.++|.|.-    .+||++++||++.||..+..   -....+......+..+.|+..|+.|+.++.|+.+.+|.-.
T Consensus       210 VRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  210 VRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             hhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            9999999964    48999999999999987521   1122334456789999999999999999999999999754

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.90  E-value=2.4e-22  Score=192.04  Aligned_cols=261  Identities=15%  Similarity=0.258  Sum_probs=209.4

Q ss_pred             EeecCCceeEEEECCCCCEEEEE--eCCeEEEEeCCCCCcccc---eeEEEEEeeccCCCeEEEEEcCCC-CeEEEeecC
Q 038577           89 RVRFKYPVNAILFSPNGKYIAVG--TGKLVQIWRSPGFKKEVF---AFELIRTLADCNDKVTALNWSPDS-NYLLVGSKD  162 (860)
Q Consensus        89 ~~~~~~~v~~~~fspdg~~la~~--~~~~i~iwd~~~~~~~~~---~~~~~~~~~~h~~~v~~l~~s~d~-~~l~s~~~d  162 (860)
                      .+.|.+.|+.+.+-|+...|+++  ..+.+.|||.........   ...+-.++.+|.+.-.+++|++.. -+|++++.|
T Consensus       120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d  199 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD  199 (422)
T ss_pred             eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence            44599999999999988666654  778999999875332111   233445889999988899999965 579999999


Q ss_pred             CeEEEEeeccccc-CcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCC
Q 038577          163 LAVRLFYVKEKLK-GIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPS  241 (860)
Q Consensus       163 g~v~vwd~~~~~~-~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~  241 (860)
                      +.|++||+..... .........+.+|...|..++|++-...    .+.+++.|+.+.+||++++..             
T Consensus       200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~----lF~sv~dd~~L~iwD~R~~~~-------------  262 (422)
T KOG0264|consen  200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED----LFGSVGDDGKLMIWDTRSNTS-------------  262 (422)
T ss_pred             CcEEEEeccccccCCccccceEEeecCCcceehhhccccchh----hheeecCCCeEEEEEcCCCCC-------------
Confidence            9999999987632 1122456778999999999999987664    899999999999999986311             


Q ss_pred             CCCCcceeeeEEeeeeccccCCCCceEEEEecCCC-CEEEEEEcCCeEEEEECCCce-eEEEEeecCceeEEEEEeeCCC
Q 038577          242 PGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGL-DMVVVGFSNGVFGLYQMPDFV-CIHLLSISREKITTAVFNELGN  319 (860)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~g~i~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~  319 (860)
                                   ........|.+.+.|++|+|.+ ..||+|+.|++|.+||+++.. ++..+..|...|..+.|+|...
T Consensus       263 -------------~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~e  329 (422)
T KOG0264|consen  263 -------------KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNE  329 (422)
T ss_pred             -------------CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCC
Confidence                         1234456788999999999965 567789999999999998754 6788999999999999999998


Q ss_pred             EEEEEEccCCcEEEEEccCc--------------eEEEEecCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECC
Q 038577          320 WLVFGCAKLGQLLVWEWRSE--------------SYILKQQGHYFDVNCLAYSPDSQ-LLATGADDNKVKVWTVS  379 (860)
Q Consensus       320 ~l~~~~~~~g~i~v~d~~~~--------------~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~  379 (860)
                      .++++++.|+.+.+||+..-              +.+..-.||...|..+.|+|+.. .+++.+.|+.+.||.+.
T Consensus       330 tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  330 TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            88888888899999998642              22344578999999999999876 56778899999999976

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=2.8e-24  Score=215.92  Aligned_cols=255  Identities=22%  Similarity=0.390  Sum_probs=219.6

Q ss_pred             EEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEE
Q 038577          278 MVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAY  357 (860)
Q Consensus       278 ~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~  357 (860)
                      .++.+...-.+++|+....      ..|...+.++..-..++.++.++.+ ..+-+|.+.....+..+.+|..+|.++.|
T Consensus         6 ~~m~~~~~t~Lr~~~~~~~------~~hsaav~~lk~~~s~r~~~~Gg~~-~k~~L~~i~kp~~i~S~~~hespIeSl~f   78 (825)
T KOG0267|consen    6 FLMKTKRATKLRVWDTREF------VAHSAAVGCLKIRKSSRSLVTGGED-EKVNLWAIGKPNAITSLTGHESPIESLTF   78 (825)
T ss_pred             ccceeeeeeccccccchhh------hhhhhhhceeeeeccceeeccCCCc-eeeccccccCCchhheeeccCCcceeeec
Confidence            3344444455666765322      2344456666665556666666554 77778988777777778999999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcE
Q 038577          358 SPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQF  437 (860)
Q Consensus       358 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  437 (860)
                      +++...|++|+.+|+|++||++.++.++++.+|...+.++.|+|-+.+.++++.|+.+++||.+...+...+.. +...+
T Consensus        79 ~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s-~~~vv  157 (825)
T KOG0267|consen   79 DTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS-HTRVV  157 (825)
T ss_pred             CcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC-Cccee
Confidence            99999999999999999999999999999999999999999999999999999999999999998888888877 66778


Q ss_pred             EEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcc
Q 038577          438 VSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFP  517 (860)
Q Consensus       438 ~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  517 (860)
                      ..+.|+|+|++++.++.|. .+++||+..|+....|++|.+.+..+.|+|..-++++|+.|+++++||+++.+.+.....
T Consensus       158 ~~l~lsP~Gr~v~~g~ed~-tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~  236 (825)
T KOG0267|consen  158 DVLRLSPDGRWVASGGEDN-TVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP  236 (825)
T ss_pred             EEEeecCCCceeeccCCcc-eeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCC
Confidence            9999999999999999988 999999999999999999999999999999999999999999999999998877776667


Q ss_pred             cCCCeEEEEEeeCCCEEEEEeCCC
Q 038577          518 HTHDVLTVVYRPDGRQLACSTLDG  541 (860)
Q Consensus       518 ~~~~v~~~~~s~~~~~l~~~~~dg  541 (860)
                      ....|.+.+|+|++..+++|....
T Consensus       237 ~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  237 ETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             ccCCceeeeecCCceeeecCchhh
Confidence            788999999999999999886553

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=4.8e-24  Score=214.24  Aligned_cols=247  Identities=27%  Similarity=0.455  Sum_probs=221.0

Q ss_pred             CcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEE
Q 038577          329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLS  408 (860)
Q Consensus       329 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s  408 (860)
                      -.+++||.+.      +..|...+.++..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.++.|+++...|++
T Consensus        14 t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaa   87 (825)
T KOG0267|consen   14 TKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAA   87 (825)
T ss_pred             eccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcc
Confidence            5566777543      3468888888888778889999999999999999888888889999999999999999999999


Q ss_pred             EeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCC
Q 038577          409 ASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPT  488 (860)
Q Consensus       409 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~  488 (860)
                      |+.+|+|++||+...+.++++.... ..+.++.|+|-+.+.+.|+.|. .+.+||.+..-+.+.+.+|...|..+.|+|+
T Consensus        88 gsasgtiK~wDleeAk~vrtLtgh~-~~~~sv~f~P~~~~~a~gStdt-d~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~  165 (825)
T KOG0267|consen   88 GSASGTIKVWDLEEAKIVRTLTGHL-LNITSVDFHPYGEFFASGSTDT-DLKIWDIRKKGCSHTYKSHTRVVDVLRLSPD  165 (825)
T ss_pred             cccCCceeeeehhhhhhhhhhhccc-cCcceeeeccceEEeccccccc-cceehhhhccCceeeecCCcceeEEEeecCC
Confidence            9999999999999999888776554 4678899999999999999998 9999999988899999999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCcc
Q 038577          489 NATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRL  568 (860)
Q Consensus       489 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  568 (860)
                      |++++++++|.+++|||...++...++..|.+.+.++.|+|..-++++|+.|+++++||+++.+.+........      
T Consensus       166 Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~------  239 (825)
T KOG0267|consen  166 GRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETD------  239 (825)
T ss_pred             CceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccC------
Confidence            99999999999999999999998888888999999999999999999999999999999999888877766543      


Q ss_pred             ccccccccccCCCCcEEEEEEecCCCEEEEecCCC
Q 038577          569 MTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSK  603 (860)
Q Consensus       569 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg  603 (860)
                                    .|.+..|+|+|+.+++|....
T Consensus       240 --------------~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  240 --------------GVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             --------------CceeeeecCCceeeecCchhh
Confidence                          599999999999998876543

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.90  E-value=4.4e-22  Score=191.15  Aligned_cols=294  Identities=16%  Similarity=0.198  Sum_probs=232.1

Q ss_pred             EEEEEcCCeEEEEECCCceeEEEEeec--CceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc--eEEEEecCcccCeEE
Q 038577          279 VVVGFSNGVFGLYQMPDFVCIHLLSIS--REKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE--SYILKQQGHYFDVNC  354 (860)
Q Consensus       279 l~~~~~~g~i~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~--~~~~~~~~~~~~v~~  354 (860)
                      +.+++....+.+||....+....+..+  ...+.++.|+.....++...+.|..+++|.-...  +....-......-.|
T Consensus         5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~C   84 (673)
T KOG4378|consen    5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFC   84 (673)
T ss_pred             eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHH
Confidence            344455567899998766555444333  2348888898877655555555677888864433  111111111223445


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCC
Q 038577          355 LAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSS  434 (860)
Q Consensus       355 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~  434 (860)
                      ++......++++|+..+.|+|||++...+.+.+++|.+.|+++.++....+|++++..|.|.+..+.++.....+..+..
T Consensus        85 v~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sg  164 (673)
T KOG4378|consen   85 VACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSG  164 (673)
T ss_pred             HhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCC
Confidence            55555668999999999999999998888889999999999999999889999999999999999999999999998888


Q ss_pred             CcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEE-ecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEEccCCcce
Q 038577          435 RQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDI-LSGHEGPVHGLVFSPTN-ATLASSSWDKTVRLWNVFEGKGS  512 (860)
Q Consensus       435 ~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~-~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~  512 (860)
                      ..+.-+.++|..++++....|.|.|.+||+....+... ...|..|...|+|+|.. .+|++.+.|+.|.+||+.... .
T Consensus       165 qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~-s  243 (673)
T KOG4378|consen  165 QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA-S  243 (673)
T ss_pred             CeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc-c
Confidence            88889999999998888777777999999998776654 46799999999999964 578899999999999998665 4


Q ss_pred             eEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCC-ceeEEEecccccCCCccccccccccccCCCCcEEEEEEec
Q 038577          513 VESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNG-ELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSA  591 (860)
Q Consensus       513 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  591 (860)
                      ........+.+.++|+++|.+|+.|...|.|..||++.. .++.++..|..                    .|++++|-|
T Consensus       244 ~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~--------------------sVt~vafq~  303 (673)
T KOG4378|consen  244 TDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA--------------------SVTRVAFQP  303 (673)
T ss_pred             cceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc--------------------ceeEEEeee
Confidence            555567788999999999999999999999999999864 56677777764                    489999977


Q ss_pred             CC
Q 038577          592 DG  593 (860)
Q Consensus       592 ~g  593 (860)
                      .-
T Consensus       304 s~  305 (673)
T KOG4378|consen  304 SP  305 (673)
T ss_pred             cc
Confidence            64

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=9.6e-23  Score=206.73  Aligned_cols=283  Identities=22%  Similarity=0.348  Sum_probs=212.5

Q ss_pred             eeEEEEEeeCCCEEEEEEccCCcEEEEEccCceE----EEEec---CcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 038577          308 KITTAVFNELGNWLVFGCAKLGQLLVWEWRSESY----ILKQQ---GHYFDVNCLAYSP-DSQLLATGADDNKVKVWTVS  379 (860)
Q Consensus       308 ~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~----~~~~~---~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~  379 (860)
                      ....+...++-..++.++.  ..+.+|.+.....    .....   .-...+..+.|.. +.++|||++..|.|.+||+.
T Consensus        41 ~~nAIs~nr~~~qiv~AGr--s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln  118 (839)
T KOG0269|consen   41 KANAISVNRDINQIVVAGR--SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN  118 (839)
T ss_pred             ccceEeecCCcceeEEecc--cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence            4556666777777777765  4667776654321    11111   1112244566664 46799999999999999998


Q ss_pred             C---CeeEEEeecCCCceEEEEEeeCC-CEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecC
Q 038577          380 S---GFCFVTFTEHTNAVTALHFMANN-HSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLD  455 (860)
Q Consensus       380 ~---~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  455 (860)
                      .   .+.+..+..|...+.++.|++.. .+|++|+.||.|++||++..+...++.. ....+..+.|+|.....+++..|
T Consensus       119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~-nSESiRDV~fsp~~~~~F~s~~d  197 (839)
T KOG0269|consen  119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS-NSESIRDVKFSPGYGNKFASIHD  197 (839)
T ss_pred             ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc-cchhhhceeeccCCCceEEEecC
Confidence            6   56677889999999999998854 6889999999999999999888777766 44578999999976655555556


Q ss_pred             CCeEEEEECCCC-ceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcc-eeEEcccCCCeEEEEEeeCCC-
Q 038577          456 SFEIFVWSMKTG-RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKG-SVESFPHTHDVLTVVYRPDGR-  532 (860)
Q Consensus       456 ~~~i~v~d~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~-  532 (860)
                      +|.+++||++.. ++...+.+|.++|.++.|+|++.+|||||.|++|+|||+.+.+. .........++..+.|-|+.+ 
T Consensus       198 sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~  277 (839)
T KOG0269|consen  198 SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSY  277 (839)
T ss_pred             CceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccc
Confidence            669999999864 56678889999999999999999999999999999999986653 333445678899999999766 


Q ss_pred             EEEEEe--CCCeEEEEeCCCCc-eeEEEecccccCCCccccccccccccCCCCcEEEEEEec-CCCEEEEecCCCeEEEE
Q 038577          533 QLACST--LDGQIHFWDPLNGE-LMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSA-DGSYILAGGSSKYICMY  608 (860)
Q Consensus       533 ~l~~~~--~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~~~~~dg~v~vw  608 (860)
                      .||+++  .|-.|+|||+...- +..++..|.+.                    ++.++|.. |-..|.+++.||+|..-
T Consensus       278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~--------------------vt~i~W~~~d~~~l~s~sKD~tv~qh  337 (839)
T KOG0269|consen  278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDS--------------------VTGIAWDSGDRINLWSCSKDGTVLQH  337 (839)
T ss_pred             hhhhhhccccceEEEEeeccccccceeeeccCcc--------------------ccceeccCCCceeeEeecCccHHHHh
Confidence            456654  46779999997653 45567777763                    77888855 44577788888877655


Q ss_pred             ECCCc
Q 038577          609 DVADQ  613 (860)
Q Consensus       609 d~~~~  613 (860)
                      .++++
T Consensus       338 ~~kna  342 (839)
T KOG0269|consen  338 LFKNA  342 (839)
T ss_pred             hhhcc
Confidence            44443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.89  E-value=5.6e-19  Score=193.39  Aligned_cols=372  Identities=29%  Similarity=0.537  Sum_probs=297.0

Q ss_pred             EeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCC
Q 038577          184 LLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQA  263 (860)
Q Consensus       184 ~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (860)
                      ....|...+..+.+.+.+.     .++.++.|+.+.+|+......                           ....+...
T Consensus        60 ~~~~~~~~i~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~~---------------------------~~~~~~~~  107 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGE-----LLLSGSSDGTIKLWDLDNGEK---------------------------LIKSLEGL  107 (466)
T ss_pred             eeeeccceEEEEEECCCCc-----EEEEecCCCcEEEEEcCCCce---------------------------eEEEEecc
Confidence            5678999999999999998     899999999999999887530                           00111111


Q ss_pred             C-CceEEEEe-cCCCC-EEEEE-EcCCeEEEEECCC-ceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccC
Q 038577          264 P-SKVTACDY-HRGLD-MVVVG-FSNGVFGLYQMPD-FVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRS  338 (860)
Q Consensus       264 ~-~~v~~~~~-~~~~~-~l~~~-~~~g~i~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~  338 (860)
                      . ..+..+.+ .+++. .++.. ..++.+.+|+... ......+..+...+..++|+|++..++.+...++.+++|+...
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (466)
T COG2319         108 HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT  187 (466)
T ss_pred             CCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC
Confidence            1 35666666 78887 45543 4489999999987 7888889999999999999999997777754369999999999


Q ss_pred             ceEEEEecCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEE-EeecCCCceEEEEEeeCCCEEEEEeCCCcEE
Q 038577          339 ESYILKQQGHYFDVNCLAYSPDSQ-LLATGADDNKVKVWTVSSGFCFV-TFTEHTNAVTALHFMANNHSLLSASLDGTVR  416 (860)
Q Consensus       339 ~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~  416 (860)
                      +..+..+.+|...+.+++|+|++. .+++++.|+.|++||...+.... .+..|.... ...|++++..+++++.|+.++
T Consensus       188 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~  266 (466)
T COG2319         188 GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIR  266 (466)
T ss_pred             CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEE
Confidence            888888888999999999999998 55555899999999988888877 688888875 448999998889999999999


Q ss_pred             EEEccccce-eeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec--CcccCeEEEEEcCCCCEEE
Q 038577          417 AWDLFRYRN-FRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS--GHEGPVHGLVFSPTNATLA  493 (860)
Q Consensus       417 ~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~  493 (860)
                      +|++..... ...+ ..+...+.++.+.|++..+++++.++ .+.+||..+........  .|...+..+.+.+++..++
T Consensus       267 ~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (466)
T COG2319         267 LWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGKLLASGSSDG-TVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLV  344 (466)
T ss_pred             EeeecCCCcEEEEE-ecCCccEEEEEECCCCCEEEEeeCCC-cEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEE
Confidence            999987665 4444 44467889999999998888888885 89999999888777665  7888899999943335565


Q ss_pred             EE-eCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEE-EeCCCeEEEEeCCCCceeEEEecccccCCCccccc
Q 038577          494 SS-SWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLAC-STLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTD  571 (860)
Q Consensus       494 s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  571 (860)
                      .+ ..|+.+.+|++.... ..........+..+.+++ ...+.. +..++.+.+|+............+.          
T Consensus       345 ~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  412 (466)
T COG2319         345 SGGSDDGTIRLWDLRTGK-PLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT----------  412 (466)
T ss_pred             EeecCCCcEEeeecCCCc-eeEEecCCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCC----------
Confidence            55 678999999998876 222223333388999998 544444 6889999999999988877776652          


Q ss_pred             cccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 038577          572 RRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVAD  612 (860)
Q Consensus       572 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~  612 (860)
                                ..+....+++++.++++++.++.+.+|+..+
T Consensus       413 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         413 ----------SRVTSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             ----------CcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence                      1489999999999999999999999999988

>PF04192 Utp21: Utp21 specific WD40 associated putative domain ; InterPro: IPR007319 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=99.89  E-value=3.1e-23  Score=192.35  Aligned_cols=174  Identities=18%  Similarity=0.247  Sum_probs=141.4

Q ss_pred             CCCCCCCCccceeEEEECCCCCeEEEeccccEE-EEecCCccccCCcccC-ccCCHHHHHhh------cCcCCcHHHHHH
Q 038577          674 ALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVL-VYSIDESFIFDPTDLD-IDVTPEAVDAA------LNEDQPKRALIL  745 (860)
Q Consensus       674 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~-i~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~l~~  745 (860)
                      .||.||||+++|+.++-+|    ||+++..|+- .+..    .......+ ...........      .....+.+.|..
T Consensus        48 ~IK~RNKPkeppKkPe~AP----FFLpt~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~f~~lL~~  119 (237)
T PF04192_consen   48 VIKERNKPKEPPKKPEKAP----FFLPTLPGLEPRFQD----AFESEEEEEEEEERSRLRKLKKDNSLDFESEFTRLLRS  119 (237)
T ss_pred             HHHHhCCCCCCCCCcCCCC----cccCcCCCCCccccc----cccccccccchhhhhhhhhcccccCccccCHHHHHHHh
Confidence            4678999999999999999    9999988753 1100    00000011 11111111111      134566777777


Q ss_pred             HHhcCChHHHHHHhHhcCCCccchhcccCC------HHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHhhhhhhccc
Q 038577          746 SLRLNEDNLIKKCIFAISPVDIPAVASSIP------YRYMQRLIEALSDLLESCPHLEFMLRWCQELCKTHGNTIQQNSR  819 (860)
Q Consensus       746 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~l~------~~~~~~ll~~l~~~l~~~~~~~~~~~~l~~~l~~H~~~l~~~~~  819 (860)
                      +...++|..++++|++++|+.|+.+|++|.      ..++..||++|.++|++++|||++|+||.+|||+||..|+.+++
T Consensus       120 ~~~~~dy~~~~~~LkslsPS~iDlEIRsL~~~~~~~~~~l~~Fl~~l~~~L~~~~dfElvQa~l~vFLk~Hgd~i~~~~~  199 (237)
T PF04192_consen  120 ASESEDYSEFLEYLKSLSPSAIDLEIRSLSPESGGSYEELVSFLRFLTYRLKSRRDFELVQAYLSVFLKVHGDVIMESEE  199 (237)
T ss_pred             hcccccHHHHHHHHHhCChhHHHHHHHhccCccCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            788899999999999999999999999997      99999999999999999999999999999999999999999872


Q ss_pred             --chhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHhh
Q 038577          820 --NLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCS  855 (860)
Q Consensus       820 --~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~  855 (860)
                        +++..|.+|.+.+++.|++|+++++||+|+++|+++
T Consensus       200 ~~~L~~~l~~l~~~q~~~w~~L~~l~~~~~cvv~fl~~  237 (237)
T PF04192_consen  200 EEELREALEELREAQESEWKRLDDLFQYCSCVVSFLRS  237 (237)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcC
Confidence              399999999999999999999999999999999985

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp21 is a component of the SSU processome, which is required for pre-18S rRNA processing. It interacts with Utp18 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.89  E-value=1.6e-21  Score=193.58  Aligned_cols=422  Identities=16%  Similarity=0.154  Sum_probs=262.2

Q ss_pred             EEEcC---CCCEEEEEcCCCcEEEEEcccCeEE------EE-eecCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCc
Q 038577           58 IAVSP---DGTFLLTVDENQRCHFINLHCHVVL------HR-VRFKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKK  126 (860)
Q Consensus        58 va~sp---dg~~la~~~~d~~i~vwd~~~~~~~------~~-~~~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~  126 (860)
                      ..|++   ....||.+.++|.|.++|.......      .. +.|...|.++.|-|....|++. +|.++++||+++.+.
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l  134 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL  134 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence            55654   2357888999999999998754322      22 2289999999999944555555 899999999998873


Q ss_pred             ccceeEEEEEeeccCCCeEEEEEcCCC-CeEEEeecCCeEEEEeeccccc---------------C------cccccceE
Q 038577          127 EVFAFELIRTLADCNDKVTALNWSPDS-NYLLVGSKDLAVRLFYVKEKLK---------------G------IHTNKPFL  184 (860)
Q Consensus       127 ~~~~~~~~~~~~~h~~~v~~l~~s~d~-~~l~s~~~dg~v~vwd~~~~~~---------------~------~~~~~~~~  184 (860)
                      .     -...+.||.+.|.+++|.|+. ..+++|+.||.|.|||+.-...               .      ........
T Consensus       135 ~-----G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k  209 (720)
T KOG0321|consen  135 V-----GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK  209 (720)
T ss_pred             e-----cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc
Confidence            1     122378999999999999976 5788999999999999865420               0      00011122


Q ss_pred             eecCCCcEEE---EEEccCCCCCccceEEEEcC-CccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccc
Q 038577          185 LLGHRDSVVG---CFFSVDKKTDKVNRIYTIAR-DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDF  260 (860)
Q Consensus       185 ~~~h~~~i~~---~~~~~~~~~~~~~~l~s~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (860)
                      ...+...|.+   +.+..|..     .|++++. |+.|+|||+............                    ....+
T Consensus       210 ~kA~s~ti~ssvTvv~fkDe~-----tlaSaga~D~~iKVWDLRk~~~~~r~ep~--------------------~~~~~  264 (720)
T KOG0321|consen  210 WKAASNTIFSSVTVVLFKDES-----TLASAGAADSTIKVWDLRKNYTAYRQEPR--------------------GSDKY  264 (720)
T ss_pred             cccccCceeeeeEEEEEeccc-----eeeeccCCCcceEEEeecccccccccCCC--------------------cccCc
Confidence            3345556666   66667777     8999988 999999999976442111110                    01111


Q ss_pred             cC---CCCceEEEEecCCCCEEEEEEcCCeEEEEECCCcee--EEEEeecCc--eeEEEEEeeCCCEEEEEEccCCcEEE
Q 038577          261 SQ---APSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVC--IHLLSISRE--KITTAVFNELGNWLVFGCAKLGQLLV  333 (860)
Q Consensus       261 ~~---~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~--~~~~~~~~~--~i~~~~~s~~~~~l~~~~~~~g~i~v  333 (860)
                      ..   ..-.+.++.....|.+|++.+.|+.|+.|++.+...  ...+.++..  -...-..+|++.+++.++.+ ...++
T Consensus       265 ~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd-~~ayi  343 (720)
T KOG0321|consen  265 PTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSD-EQAYI  343 (720)
T ss_pred             cCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCC-cceee
Confidence            11   234678888889999999999999999999975432  222222221  12234568999999999887 99999


Q ss_pred             EEccCceE-EEEecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeE--------------EEeecCCCceEEE
Q 038577          334 WEWRSESY-ILKQQGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSSGFCF--------------VTFTEHTNAVTAL  397 (860)
Q Consensus       334 ~d~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~--------------~~~~~~~~~v~~i  397 (860)
                      |.+.+.+. ...+.+|...|++++|.|.. .-+++++.|..+++|++..+-..              ..+++|...+..+
T Consensus       344 w~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv  423 (720)
T KOG0321|consen  344 WVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNV  423 (720)
T ss_pred             eeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhccccccccc
Confidence            99987644 34457899999999998843 35777799999999999654322              2233344333333


Q ss_pred             EEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC---CeEEEEECCCCceEEE--
Q 038577          398 HFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS---FEIFVWSMKTGRLLDI--  472 (860)
Q Consensus       398 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~i~v~d~~~~~~~~~--  472 (860)
                      .++-.+.+..  ...+..++|..                ...++..|++.-...+....   ..|...+....++...  
T Consensus       424 ~ss~~~t~~~--pR~~~~r~~ss----------------P~s~a~~~s~~s~~~~~~~t~qt~~i~~~p~kr~~~~ss~~  485 (720)
T KOG0321|consen  424 NSSLRKTYKD--PREGMNRISSS----------------PVSLACSPSGASDDCGYGVTDQTSGIVVFPTKRNKPSSSRG  485 (720)
T ss_pred             cccccccccc--hhhhccccccC----------------ccchhcCcCCcccccCCCcccccccceecchhccCcccccc
Confidence            3332221111  11223333322                22333344433332221110   1344444443333222  


Q ss_pred             ecCcccCeEEEEEcCCCCEEEEEeC-----------CCcEEEEEccCCcceeEEcccCCCeEEEEEee
Q 038577          473 LSGHEGPVHGLVFSPTNATLASSSW-----------DKTVRLWNVFEGKGSVESFPHTHDVLTVVYRP  529 (860)
Q Consensus       473 ~~~h~~~v~~l~~s~~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  529 (860)
                      -.+|-..|....+++.+..+++.+.           ++.++.|.............. .....+.|+|
T Consensus       486 s~~~~~Svs~~d~ss~~s~~~s~SP~~~~~stpp~sets~~s~~s~l~pps~~~r~a-r~~~r~ifs~  552 (720)
T KOG0321|consen  486 SGGHLSSVSAEDWSSEKSQLASRSPQKNRGSTPPISETSVNSPNSSLHPPSANLREA-RKKSRLIFSP  552 (720)
T ss_pred             ccccccccccCCCccccccccccCcccccCCCCCcCcccccccccccCCchhhhccc-ccccceeccC
Confidence            1235666777777777777888776           778888876554422222211 1445555555

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.89  E-value=1.5e-18  Score=190.08  Aligned_cols=374  Identities=27%  Similarity=0.442  Sum_probs=292.5

Q ss_pred             EeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccc-cceEeecCC-CcEEEEEE-ccCCCCCccceEEEE
Q 038577          136 TLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTN-KPFLLLGHR-DSVVGCFF-SVDKKTDKVNRIYTI  212 (860)
Q Consensus       136 ~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~~~~h~-~~i~~~~~-~~~~~~~~~~~l~s~  212 (860)
                      ....|...+.++.|.+.+..++.++.|+.+.+|+....      . ....+.++. ..+..+.+ .+++..    .++..
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  129 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNG------EKLIKSLEGLHDSSVSKLALSSPDGNS----ILLAS  129 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCC------ceeEEEEeccCCCceeeEEEECCCcce----EEecc
Confidence            45678899999999999999999999999999999887      3 455555544 36777777 666541    34443


Q ss_pred             cC-CccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEc-CCeEEE
Q 038577          213 AR-DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFS-NGVFGL  290 (860)
Q Consensus       213 ~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~g~i~~  290 (860)
                      +. |+.+.+|+.....                           .....+..|...+..+.++|++..++.+.. ++.+.+
T Consensus       130 ~~~d~~~~~~~~~~~~---------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  182 (466)
T COG2319         130 SSLDGTVKLWDLSTPG---------------------------KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKL  182 (466)
T ss_pred             CCCCccEEEEEecCCC---------------------------eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEE
Confidence            44 8999999988610                           123445677888999999999998888885 999999


Q ss_pred             EECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEE-EecCcccCeEEEEEcCCCCEEEEEeC
Q 038577          291 YQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYIL-KQQGHYFDVNCLAYSPDSQLLATGAD  369 (860)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~  369 (860)
                      |+.........+..+...+.+++|+|++..++.+...++.+.+||...+.... .+..|.... ...|+|++..+++++.
T Consensus       183 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  261 (466)
T COG2319         183 WDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS  261 (466)
T ss_pred             EEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC
Confidence            99998888888888999999999999998666665667999999988777777 577887775 4489999989999999


Q ss_pred             CCcEEEEECCCCee-EEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEee-CCCCCcEEEEEECCCCC
Q 038577          370 DNKVKVWTVSSGFC-FVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFT-TPSSRQFVSLASDQSGE  447 (860)
Q Consensus       370 dg~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  447 (860)
                      |+.+++|+...... ...+..|...+.++.|.|++..+++++.|+.+.+|+..+........ ..+...+..+.+.+++.
T Consensus       262 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (466)
T COG2319         262 DGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGS  341 (466)
T ss_pred             CCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCC
Confidence            99999999986664 44446788999999999988888889999889999988877666655 23333577787743435


Q ss_pred             EEEEE-ecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEE-EeCCCcEEEEEccCCcceeEEcccCCCeEEE
Q 038577          448 VICAG-TLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLAS-SSWDKTVRLWNVFEGKGSVESFPHTHDVLTV  525 (860)
Q Consensus       448 ~l~~~-~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  525 (860)
                      .++.+ ..++ .+.+|+............. ..+..+.+++ ...+.. +..++.+.+|+............+...+...
T Consensus       342 ~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (466)
T COG2319         342 LLVSGGSDDG-TIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSL  418 (466)
T ss_pred             EEEEeecCCC-cEEeeecCCCceeEEecCC-ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEE
Confidence            66666 4554 8888999988733333322 2288999998 544444 6889999999998887544444433789999


Q ss_pred             EEeeCCCEEEEEeCCCeEEEEeCCC
Q 038577          526 VYRPDGRQLACSTLDGQIHFWDPLN  550 (860)
Q Consensus       526 ~~s~~~~~l~~~~~dg~i~iwd~~~  550 (860)
                      .+++++..+++++.++.+++|+..+
T Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         419 DFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             EECCCCcEEEEecCCCcEEEEeccC
Confidence            9999999999999999999999987

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.89  E-value=2.9e-21  Score=191.67  Aligned_cols=274  Identities=21%  Similarity=0.323  Sum_probs=207.5

Q ss_pred             CCEEEEEEcCCeEEEEECCCceeE------EEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEE--ecC
Q 038577          276 LDMVVVGFSNGVFGLYQMPDFVCI------HLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILK--QQG  347 (860)
Q Consensus       276 ~~~l~~~~~~g~i~~~~~~~~~~~------~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~--~~~  347 (860)
                      ...|+++.++|.|.++|.......      .....|...|..+.|-| |+..++....|.+++.||+++.+....  +.+
T Consensus        64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G  142 (720)
T KOG0321|consen   64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLG  142 (720)
T ss_pred             cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecc
Confidence            356889999999999998754333      55667889999999999 555555445559999999999988777  789


Q ss_pred             cccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCe---------------------------eEEEeecCCCceEE---
Q 038577          348 HYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSSGF---------------------------CFVTFTEHTNAVTA---  396 (860)
Q Consensus       348 ~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~---------------------------~~~~~~~~~~~v~~---  396 (860)
                      |...|.+++|.|.. ..|++|+.||.|.|||++-..                           .+.....+...|.+   
T Consensus       143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvT  222 (720)
T KOG0321|consen  143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVT  222 (720)
T ss_pred             cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeE
Confidence            99999999999965 478899999999999986321                           01111234555555   


Q ss_pred             EEEeeCCCEEEEEeC-CCcEEEEEccccceeeEee--------CC--CCCcEEEEEECCCCCEEEEEecCCCeEEEEECC
Q 038577          397 LHFMANNHSLLSASL-DGTVRAWDLFRYRNFRTFT--------TP--SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK  465 (860)
Q Consensus       397 i~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~  465 (860)
                      +.+..|...|+++|. |+.|++||+++........        .+  ....+.++..+..|.++.+.+.|+ .|+.||+.
T Consensus       223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~-sIy~ynm~  301 (720)
T KOG0321|consen  223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN-SIYFYNMR  301 (720)
T ss_pred             EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC-cEEEEecc
Confidence            556678889999887 9999999998765332211        11  123577888999999999999998 99999998


Q ss_pred             CC--ceEEEecCcccC--eEEEEEcCCCCEEEEEeCCCcEEEEEccCCcce-eEEcccCCCeEEEEEeeCC-CEEEEEeC
Q 038577          466 TG--RLLDILSGHEGP--VHGLVFSPTNATLASSSWDKTVRLWNVFEGKGS-VESFPHTHDVLTVVYRPDG-RQLACSTL  539 (860)
Q Consensus       466 ~~--~~~~~~~~h~~~--v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~-~~l~~~~~  539 (860)
                      +-  .++..+.++...  -..-..+||+.++++|+.|...++|.+.+.+.. ..+.+|...|++++|.|.. .-++++++
T Consensus       302 s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSd  381 (720)
T KOG0321|consen  302 SLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSD  381 (720)
T ss_pred             ccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeecc
Confidence            64  344445444321  122346899999999999999999999887644 3445899999999999832 34677799


Q ss_pred             CCeEEEEeCCCC
Q 038577          540 DGQIHFWDPLNG  551 (860)
Q Consensus       540 dg~i~iwd~~~~  551 (860)
                      |..+++|++..+
T Consensus       382 D~~~kiW~l~~~  393 (720)
T KOG0321|consen  382 DFRVKIWRLSNG  393 (720)
T ss_pred             CcceEEEeccCc
Confidence            999999999654

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=6.5e-22  Score=200.78  Aligned_cols=283  Identities=21%  Similarity=0.342  Sum_probs=218.2

Q ss_pred             ceEEEEecCCCCEEEEEEcCCeEEEEECCCc--e--eEEEEeecC---ceeEEEEEeeCCCEEEEEEccCCcEEEEEccC
Q 038577          266 KVTACDYHRGLDMVVVGFSNGVFGLYQMPDF--V--CIHLLSISR---EKITTAVFNELGNWLVFGCAKLGQLLVWEWRS  338 (860)
Q Consensus       266 ~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~--~--~~~~~~~~~---~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~  338 (860)
                      ....+...++...+++++.. .+.+|.++..  .  +........   ..+..+.|......++++++.+|.|.+||+..
T Consensus        41 ~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk  119 (839)
T KOG0269|consen   41 KANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK  119 (839)
T ss_pred             ccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence            45677777887777766544 4555554422  1  111111111   24556778765566666666679999999987


Q ss_pred             ---ceEEEEecCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeC-CCEEEEEeCCC
Q 038577          339 ---ESYILKQQGHYFDVNCLAYSPD-SQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMAN-NHSLLSASLDG  413 (860)
Q Consensus       339 ---~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~dg  413 (860)
                         .+.+..+..|...+.++.|++. ..+|++|++||.|++||++..+...++.+....|+++.|+|. +..++++...|
T Consensus       120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG  199 (839)
T KOG0269|consen  120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG  199 (839)
T ss_pred             cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence               5566677889999999999985 458899999999999999999999999999999999999984 57899999999


Q ss_pred             cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceE--EEecCcccCeEEEEEcCCCCE
Q 038577          414 TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLL--DILSGHEGPVHGLVFSPTNAT  491 (860)
Q Consensus       414 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~--~~~~~h~~~v~~l~~s~~~~~  491 (860)
                      .+++||++...........+.+++.++.++|++.+||+|+.|+ .|+|||+.+.+..  .++. ...+|.++.|-|..++
T Consensus       200 ~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK-~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~  277 (839)
T KOG0269|consen  200 YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDK-MVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSY  277 (839)
T ss_pred             eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCc-cEEEEeccCCCccceeEEe-ecceeeeeeeccCccc
Confidence            9999999987665555566778999999999999999999999 9999999876543  3333 3578999999998655


Q ss_pred             -EEEEeC--CCcEEEEEccCCccee-EEcccCCCeEEEEEee-CCCEEEEEeCCCeEEEEeCCCC
Q 038577          492 -LASSSW--DKTVRLWNVFEGKGSV-ESFPHTHDVLTVVYRP-DGRQLACSTLDGQIHFWDPLNG  551 (860)
Q Consensus       492 -l~s~~~--dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~  551 (860)
                       ||+++.  |-.|+|||++...... .+..|...++.++|.. |...+.+++.||+|..-..+++
T Consensus       278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence             776664  7889999998876544 4447999999999976 5567889999998766555444

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.88  E-value=6.8e-21  Score=181.69  Aligned_cols=299  Identities=20%  Similarity=0.258  Sum_probs=234.5

Q ss_pred             EEEeeccCCCeEEEEEcCCC--CeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEE
Q 038577          134 IRTLADCNDKVTALNWSPDS--NYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYT  211 (860)
Q Consensus       134 ~~~~~~h~~~v~~l~~s~d~--~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s  211 (860)
                      .....-+.++|++++|.|..  +.+|+|..-|+|-+||+.+..+  .......+..|.++|.++.|+|....    .+++
T Consensus       179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~--d~d~v~~f~~hs~~Vs~l~F~P~n~s----~i~s  252 (498)
T KOG4328|consen  179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK--DKDGVYLFTPHSGPVSGLKFSPANTS----QIYS  252 (498)
T ss_pred             cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC--ccCceEEeccCCccccceEecCCChh----heee
Confidence            34556788999999999966  5788899999999999963311  11346778899999999999997765    8999


Q ss_pred             EcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEE
Q 038577          212 IARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLY  291 (860)
Q Consensus       212 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~  291 (860)
                      .+.||+|++-|+++......                          .........+..+.|+.+...++++..=|.+.+|
T Consensus       253 sSyDGtiR~~D~~~~i~e~v--------------------------~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~i  306 (498)
T KOG4328|consen  253 SSYDGTIRLQDFEGNISEEV--------------------------LSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVI  306 (498)
T ss_pred             eccCceeeeeeecchhhHHH--------------------------hhcCccceeeeeccccCCCccEEEeecccceEEE
Confidence            99999999999987543111                          0011233457778888888889999988999999


Q ss_pred             ECCCcee-EEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceE----EEEecCcccCeEEEEEcCCCCEEEE
Q 038577          292 QMPDFVC-IHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESY----ILKQQGHYFDVNCLAYSPDSQLLAT  366 (860)
Q Consensus       292 ~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~  366 (860)
                      |..+... ...+..|...|.+++++|...+++++++.|++.+|||++.-..    ......|...|.+..|||.+..|++
T Consensus       307 D~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~T  386 (498)
T KOG4328|consen  307 DLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLT  386 (498)
T ss_pred             EeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEe
Confidence            9987655 6677788889999999999999988888889999999975322    3334579999999999999888999


Q ss_pred             EeCCCcEEEEECC----CCeeEEEeecCCC------ceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCc
Q 038577          367 GADDNKVKVWTVS----SGFCFVTFTEHTN------AVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQ  436 (860)
Q Consensus       367 ~~~dg~i~iwd~~----~~~~~~~~~~~~~------~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~  436 (860)
                      .+.|..|+|||..    .-....++. |+.      ......|.|+..++++|-.-..|-++|-..++.+..+..+....
T Consensus       387 T~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~t  465 (498)
T KOG4328|consen  387 TCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESST  465 (498)
T ss_pred             eccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccc
Confidence            9999999999983    223333332 322      23456799999999999999999999998888788877776655


Q ss_pred             EEE-EEECCCCCEEEEEecCCCeEEEEECC
Q 038577          437 FVS-LASDQSGEVICAGTLDSFEIFVWSMK  465 (860)
Q Consensus       437 ~~~-~~~~~~~~~l~~~~~~~~~i~v~d~~  465 (860)
                      |.+ ..++|-+..+++|+...|.|+||--+
T Consensus       466 I~~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  466 IPSVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             cccceeecccccceeccCCccceEEEEecC
Confidence            555 57899999888888877799988654

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=2.6e-20  Score=168.52  Aligned_cols=265  Identities=15%  Similarity=0.211  Sum_probs=193.9

Q ss_pred             cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----CeeEEEeecCCCceEEEEEee--CCCEEEEEeCCCcEEEEE
Q 038577          346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS----GFCFVTFTEHTNAVTALHFMA--NNHSLLSASLDGTVRAWD  419 (860)
Q Consensus       346 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~dg~i~~wd  419 (860)
                      .+|..-|.++.|.+-|+++|+++.|++|+|||.++    ..+....+.|.+.|..+.|.+  -|+.+++++.|+++.+|.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            46888899999999999999999999999999653    356677889999999999965  478999999999999998


Q ss_pred             cccc--c------eeeEeeCCCCCcEEEEEECCC--CCEEEEEecCCCeEEEEECCCC------ceEEEec-------Cc
Q 038577          420 LFRY--R------NFRTFTTPSSRQFVSLASDQS--GEVICAGTLDSFEIFVWSMKTG------RLLDILS-------GH  476 (860)
Q Consensus       420 ~~~~--~------~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~i~v~d~~~~------~~~~~~~-------~h  476 (860)
                      -...  +      ..++........++.+.|.|.  |-.+|+++.|| .++||+.-.-      .+.+.++       .+
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG-~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~  168 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADG-ILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN  168 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCc-EEEEEecCCccccccchhhhhhhhccCCcccc
Confidence            6211  1      112223345567899999885  67889999998 9999986542      2333333       46


Q ss_pred             ccCeEEEEEcCC---CCEEEEEeCC-----CcEEEEEccCCc----ceeEEcccCCCeEEEEEeeC----CCEEEEEeCC
Q 038577          477 EGPVHGLVFSPT---NATLASSSWD-----KTVRLWNVFEGK----GSVESFPHTHDVLTVVYRPD----GRQLACSTLD  540 (860)
Q Consensus       477 ~~~v~~l~~s~~---~~~l~s~~~d-----g~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~d  540 (860)
                      ..+-.|+.|+|.   ..+||.|+.+     +.++||....+.    ...++.+|..+|++++|.|+    -.+||+++.|
T Consensus       169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD  248 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD  248 (361)
T ss_pred             cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence            677889999974   4678888765     479999876543    23445589999999999994    3589999999


Q ss_pred             CeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 038577          541 GQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVAD  612 (860)
Q Consensus       541 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~  612 (860)
                      | |+||.+......-.-+.......-.............|+..|..++|.-.|..|.+.|.||+|++|...-
T Consensus       249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence            9 9999986422110000000000000112223334556777899999999999999999999999997643

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2.5e-19  Score=181.87  Aligned_cols=513  Identities=16%  Similarity=0.184  Sum_probs=325.6

Q ss_pred             cccccccc--CCcEEEeCCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCC------------CEEEEEcC
Q 038577            7 NLLGAPYR--GGNAVLSQNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDG------------TFLLTVDE   72 (860)
Q Consensus         7 ~~~g~~~~--~~~~~~sdg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg------------~~la~~~~   72 (860)
                      .+-|++.+  .+++.++++.+||||+++.|.+.|..+-+.+..+.-|...|+.+.|+|-.            -+||+++.
T Consensus         8 tlpG~l~~sN~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~   87 (1062)
T KOG1912|consen    8 TLPGPLSRSNRNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADI   87 (1062)
T ss_pred             cCCCCCCcccccccccCccceEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccc
Confidence            34465553  44677777779999999999999999999988887899999999998731            35788888


Q ss_pred             CCcEEEEEcccCeEEEEee-cCCceeEEEECC---CC-CEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEE
Q 038577           73 NQRCHFINLHCHVVLHRVR-FKYPVNAILFSP---NG-KYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTA  146 (860)
Q Consensus        73 d~~i~vwd~~~~~~~~~~~-~~~~v~~~~fsp---dg-~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~  146 (860)
                      .|.|.+||...+..+..+. +..++.+++|-|   +. .+|++. +.+.+.+|+..+|+.       .-..........|
T Consensus        88 ~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k-------~Wk~~ys~~iLs~  160 (1062)
T KOG1912|consen   88 SGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK-------FWKYDYSHEILSC  160 (1062)
T ss_pred             cCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce-------eeccccCCcceee
Confidence            9999999999998888887 678899999966   44 334443 889999999999984       3444444456677


Q ss_pred             EEEcC-CCCeEEEeecCCeEEEEeecccccC-cccccceEeecCCC----------------c---------EEEEEEcc
Q 038577          147 LNWSP-DSNYLLVGSKDLAVRLFYVKEKLKG-IHTNKPFLLLGHRD----------------S---------VVGCFFSV  199 (860)
Q Consensus       147 l~~s~-d~~~l~s~~~dg~v~vwd~~~~~~~-~~~~~~~~~~~h~~----------------~---------i~~~~~~~  199 (860)
                      +.+.| |.+.+..-+..|.+.+-+.-...+. ....+.+.-..|.+                .         ...++|+|
T Consensus       161 f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p  240 (1062)
T KOG1912|consen  161 FRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSP  240 (1062)
T ss_pred             eeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcCh
Confidence            88888 4566666666677766654432111 11111122222222                0         01245566


Q ss_pred             CCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEE
Q 038577          200 DKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMV  279 (860)
Q Consensus       200 ~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  279 (860)
                      .-+     .++.......+.++|++-..+                          .....+.....++..+--.|..+.|
T Consensus       241 ~~r-----n~lfi~~prellv~dle~~~~--------------------------l~vvpier~~akfv~vlP~~~rd~L  289 (1062)
T KOG1912|consen  241 HWR-----NILFITFPRELLVFDLEYECC--------------------------LAVVPIERGGAKFVDVLPDPRRDAL  289 (1062)
T ss_pred             hhh-----ceEEEEeccceEEEcchhhce--------------------------eEEEEeccCCcceeEeccCCCcceE
Confidence            665     455555667788888876433                          1111222222333344444455679


Q ss_pred             EEEEcCCeEEEEECCC----------------ceeEEEEeec-CceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEE
Q 038577          280 VVGFSNGVFGLYQMPD----------------FVCIHLLSIS-REKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYI  342 (860)
Q Consensus       280 ~~~~~~g~i~~~~~~~----------------~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~  342 (860)
                      +++..||.+.+|-.+.                ++....+..- ...+......|.....++.-..+|.+.+|.+.+++..
T Consensus       290 fclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~  369 (1062)
T KOG1912|consen  290 FCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIH  369 (1062)
T ss_pred             EEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcC
Confidence            9999999999997654                1222222111 1122223333432222222222377788877644321


Q ss_pred             EE-------------------------------ecCcccCeEEEEEcC-----------CC-------CEEEEEeCCCcE
Q 038577          343 LK-------------------------------QQGHYFDVNCLAYSP-----------DS-------QLLATGADDNKV  373 (860)
Q Consensus       343 ~~-------------------------------~~~~~~~v~~~~~s~-----------~~-------~~l~~~~~dg~i  373 (860)
                      ..                               -.+|....++....|           .|       ..+|.|...|+|
T Consensus       370 ~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV  449 (1062)
T KOG1912|consen  370 LDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTV  449 (1062)
T ss_pred             cccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceE
Confidence            00                               023444455544433           22       367899999999


Q ss_pred             EEEECCCCeeEEEeecCCCceEEEEEeeCCCEEE---------EEeCCCcEEEEEccccce--eeEeeCCCCCcEEEEEE
Q 038577          374 KVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLL---------SASLDGTVRAWDLFRYRN--FRTFTTPSSRQFVSLAS  442 (860)
Q Consensus       374 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~---------s~~~dg~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~  442 (860)
                      .++|+.++.....+..|.+.|.++.|....+.+-         +++.-+.+.+-|+++|..  ++.++.+...+|..+..
T Consensus       450 ~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irv  529 (1062)
T KOG1912|consen  450 DVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRV  529 (1062)
T ss_pred             EEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeee
Confidence            9999999999999999999999999987654332         222234577889988754  45557788889999999


Q ss_pred             CCCCCEEEEEecCCCeEEEEECCCCceEEEec--------------Cc------------------------ccCe----
Q 038577          443 DQSGEVICAGTLDSFEIFVWSMKTGRLLDILS--------------GH------------------------EGPV----  480 (860)
Q Consensus       443 ~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~--------------~h------------------------~~~v----  480 (860)
                      +..|+++++...+. .+.+||+++..+++...              .|                        ...+    
T Consensus       530 S~~~~yLai~Fr~~-plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds~es~~~~~~  608 (1062)
T KOG1912|consen  530 SSSGRYLAILFRRE-PLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDSVESRIYHIT  608 (1062)
T ss_pred             cccCceEEEEeccc-chHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhceeeeccccchheehh
Confidence            99999999999998 89999986543221110              00                        0001    


Q ss_pred             -----------------------EEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeE--EcccCCCeEEEEEeeCCCEEE
Q 038577          481 -----------------------HGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVE--SFPHTHDVLTVVYRPDGRQLA  535 (860)
Q Consensus       481 -----------------------~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~  535 (860)
                                             ..++|  .+..++.|..+|.+.+||+........  ...+........+-|....++
T Consensus       609 ~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg~~d~p~~ra~~l~~~~ipG~~~~l  686 (1062)
T KOG1912|consen  609 LSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRGVRDSPDPRAHSLTFPQIPGDHTTL  686 (1062)
T ss_pred             hhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccCccCCCCchhhheecccCCCCceEE
Confidence                                   11222  345789999999999999754432111  112333333444455433455


Q ss_pred             EEeCCCeEEEEeCCCCceeEEEeccc
Q 038577          536 CSTLDGQIHFWDPLNGELMYTIEGRR  561 (860)
Q Consensus       536 ~~~~dg~i~iwd~~~~~~~~~~~~~~  561 (860)
                      +--.|+ +-+||.+....+..+.+..
T Consensus       687 vl~~d~-~~lwdtk~~~lV~siag~d  711 (1062)
T KOG1912|consen  687 VLELDW-LPLWDTKADTLVLSIAGMD  711 (1062)
T ss_pred             EEecCc-ceecccccceeeeeeccCC
Confidence            555555 8999998888888875443

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.88  E-value=3e-20  Score=174.73  Aligned_cols=163  Identities=21%  Similarity=0.324  Sum_probs=136.2

Q ss_pred             CccCeeEEEEcCCCC-EEEEEcCCCcEEEEEcccCe------EEE---Eee-cCCceeEEEECCCCCEEEEE-eCCeEEE
Q 038577           51 SSSNICRIAVSPDGT-FLLTVDENQRCHFINLHCHV------VLH---RVR-FKYPVNAILFSPNGKYIAVG-TGKLVQI  118 (860)
Q Consensus        51 h~~~v~~va~spdg~-~la~~~~d~~i~vwd~~~~~------~~~---~~~-~~~~v~~~~fspdg~~la~~-~~~~i~i  118 (860)
                      ...+|..+.|.+++. .||+|+.|..|++|-+..+.      .+.   .+. |...|+++.|+|+|.+||+| .++.|.+
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL   91 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence            346789999999887 99999999999999876432      222   222 89999999999999999999 6689999


Q ss_pred             EeCC--------C-CCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCC
Q 038577          119 WRSP--------G-FKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHR  189 (860)
Q Consensus       119 wd~~--------~-~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~  189 (860)
                      |...        + .+...+.+.....+.+|...|..++|+||+.++++++.|..+++||+..+      .....+.+|.
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G------~l~~~~~dh~  165 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG------QLLAILDDHE  165 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc------eeEeeccccc
Confidence            9876        2 00112346677889999999999999999999999999999999999999      7788999999


Q ss_pred             CcEEEEEEccCCCCCccceEEEEcCCccEEEeeec
Q 038577          190 DSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFS  224 (860)
Q Consensus       190 ~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~  224 (860)
                      ..+..++|.|-++     ++++-+.|...+.+++.
T Consensus       166 ~yvqgvawDpl~q-----yv~s~s~dr~~~~~~~~  195 (434)
T KOG1009|consen  166 HYVQGVAWDPLNQ-----YVASKSSDRHPEGFSAK  195 (434)
T ss_pred             cccceeecchhhh-----hhhhhccCcccceeeee
Confidence            9999999999999     99999988766555544

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.87  E-value=1.6e-20  Score=180.46  Aligned_cols=294  Identities=14%  Similarity=0.157  Sum_probs=226.5

Q ss_pred             EEEEEeCCeEEEEeCCCCCcccceeEEEEEeecc--CCCeEEEEEcCCCCeEEE--eecCCeEEEEeecccccCcccccc
Q 038577          107 YIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADC--NDKVTALNWSPDSNYLLV--GSKDLAVRLFYVKEKLKGIHTNKP  182 (860)
Q Consensus       107 ~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~s~d~~~l~s--~~~dg~v~vwd~~~~~~~~~~~~~  182 (860)
                      +.++.....+++||....+..       ..+..|  ...+.++.|+.... |++  .+.|..+++|.-... .+   ..+
T Consensus         5 l~~aS~gd~~kl~D~s~~~~~-------~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~-~~---~Vp   72 (673)
T KOG4378|consen    5 LHVASTGDKTKLSDFSDLETK-------SEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGK-TP---EVP   72 (673)
T ss_pred             eeeeccCCceEEeecccccCc-------cccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCC-CC---ccc
Confidence            455556778999998865421       112222  22388999987664 444  467888999986654 11   112


Q ss_pred             eEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccC
Q 038577          183 FLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQ  262 (860)
Q Consensus       183 ~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (860)
                      ..-....+.-.|+.......     ++++++..+.|++||+.....                            ...+..
T Consensus        73 ~~~k~~gd~~~Cv~~~s~S~-----y~~sgG~~~~Vkiwdl~~kl~----------------------------hr~lkd  119 (673)
T KOG4378|consen   73 RVRKLTGDNAFCVACASQSL-----YEISGGQSGCVKIWDLRAKLI----------------------------HRFLKD  119 (673)
T ss_pred             eeeccccchHHHHhhhhcce-----eeeccCcCceeeehhhHHHHH----------------------------hhhccC
Confidence            21111112223333333335     999999999999999985322                            455678


Q ss_pred             CCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecC-ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceE
Q 038577          263 APSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISR-EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESY  341 (860)
Q Consensus       263 ~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~  341 (860)
                      |.+.|+++.+.-...++|+++..|.|.+..+.++.....+.... ..++.+.+++..+.++...+++|.|.+||+.....
T Consensus       120 h~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp  199 (673)
T KOG4378|consen  120 HQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP  199 (673)
T ss_pred             CcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc
Confidence            88999999999999999999999999999999998888888774 46779999999999999999999999999998887


Q ss_pred             EEEe-cCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 038577          342 ILKQ-QGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWD  419 (860)
Q Consensus       342 ~~~~-~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd  419 (860)
                      +..+ ..|..+...++|+|.. .+|++.+.|..|.+||.........+. ...+...++|.++|.+|+.|...|.|..||
T Consensus       200 ~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD  278 (673)
T KOG4378|consen  200 IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYD  278 (673)
T ss_pred             ccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEe
Confidence            7766 5699999999999964 577889999999999998776666654 567899999999999999999999999999


Q ss_pred             ccccceeeEeeCCCCCcEEEEEECCCC
Q 038577          420 LFRYRNFRTFTTPSSRQFVSLASDQSG  446 (860)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (860)
                      ++..+........+...|++++|-|.-
T Consensus       279 ~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  279 MRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             cccCCCCceEeeecccceeEEEeeecc
Confidence            998776666666666679999998765

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.87  E-value=3.9e-20  Score=176.57  Aligned_cols=302  Identities=17%  Similarity=0.266  Sum_probs=227.6

Q ss_pred             EECCCceeEEEEeecCceeEEEEEeeCCC-EEEEEEccCCcEEEEEccC----ceEEEEecCcccCeEEEEEcCC-CCEE
Q 038577          291 YQMPDFVCIHLLSISREKITTAVFNELGN-WLVFGCAKLGQLLVWEWRS----ESYILKQQGHYFDVNCLAYSPD-SQLL  364 (860)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~~~g~i~v~d~~~----~~~~~~~~~~~~~v~~~~~s~~-~~~l  364 (860)
                      +++.+.......+.+..+|++++|+|..+ .+++++...|+|-+||+.+    ...+..+..|..+|.++.|+|. ...+
T Consensus       171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i  250 (498)
T KOG4328|consen  171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI  250 (498)
T ss_pred             cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence            45555566677788889999999999887 7888888889999999952    2345556789999999999995 4578


Q ss_pred             EEEeCCCcEEEEECCCCeeEE--EeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEE
Q 038577          365 ATGADDNKVKVWTVSSGFCFV--TFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLAS  442 (860)
Q Consensus       365 ~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  442 (860)
                      ++.+.||+|++-|++.+....  ........+.++.|+.+...++.++.=|.+.+||+++.........-+...|.++++
T Consensus       251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~  330 (498)
T KOG4328|consen  251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL  330 (498)
T ss_pred             eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence            899999999999998664332  333345567788888888888888888899999999877644333344458999999


Q ss_pred             CCCCCE-EEEEecCCCeEEEEECCCCc----eEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcc---CCcceeE
Q 038577          443 DQSGEV-ICAGTLDSFEIFVWSMKTGR----LLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVF---EGKGSVE  514 (860)
Q Consensus       443 ~~~~~~-l~~~~~~~~~i~v~d~~~~~----~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~---~~~~~~~  514 (860)
                      +|...+ +++++.|+ +.+|||++.-.    ++-....|...|.+..|||.+-.|+|.+.|..|+|||..   ...+...
T Consensus       331 NP~~p~~laT~s~D~-T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~  409 (498)
T KOG4328|consen  331 NPVCPWFLATASLDQ-TAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLG  409 (498)
T ss_pred             CCCCchheeecccCc-ceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccc
Confidence            998764 56666677 99999998532    223334599999999999998889999999999999984   2222333


Q ss_pred             EcccCC------CeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEE-E
Q 038577          515 SFPHTH------DVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTT-L  587 (860)
Q Consensus       515 ~~~~~~------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-l  587 (860)
                      .+.|+.      .....+|.|+..++++|-.-..|-|||-..++.+..+......                   .|.+ .
T Consensus       410 ~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~-------------------tI~~vn  470 (498)
T KOG4328|consen  410 TIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS-------------------TIPSVN  470 (498)
T ss_pred             eeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-------------------ccccce
Confidence            333332      2345789999999999999999999999999988877655431                   2333 4


Q ss_pred             EEecCCCEEEEe-cCCCeEEEEECCC
Q 038577          588 CYSADGSYILAG-GSSKYICMYDVAD  612 (860)
Q Consensus       588 ~~s~~g~~l~~~-~~dg~v~vwd~~~  612 (860)
                      .|.|-+..+++| +..|.|+||--+.
T Consensus       471 ~~HP~~~~~~aG~~s~Gki~vft~k~  496 (498)
T KOG4328|consen  471 EFHPMRDTLAAGGNSSGKIYVFTNKK  496 (498)
T ss_pred             eecccccceeccCCccceEEEEecCC
Confidence            789988855555 4678888886543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.87  E-value=8.7e-20  Score=171.65  Aligned_cols=335  Identities=17%  Similarity=0.209  Sum_probs=228.8

Q ss_pred             CCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCce
Q 038577          188 HRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKV  267 (860)
Q Consensus       188 h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  267 (860)
                      ...++.++.|.++...    .+++++.|..|++|.++.......                   .-.+.....+..|...|
T Consensus        12 ~~~pv~s~dfq~n~~~----~laT~G~D~~iriW~v~r~~~~~~-------------------~~~V~y~s~Ls~H~~aV   68 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLN----KLATAGGDKDIRIWKVNRSEPGGG-------------------DMKVEYLSSLSRHTRAV   68 (434)
T ss_pred             CCCceEEEEeccCccc----ceecccCccceeeeeeeecCCCCC-------------------ceeEEEeecccCCccee
Confidence            3457888899887754    899999999999999987644110                   12334456778899999


Q ss_pred             EEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecC
Q 038577          268 TACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQG  347 (860)
Q Consensus       268 ~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~  347 (860)
                      .++.|+|+|+.+++|+.+|.+.+|....-..           .     +...     ..+      -+-+.......+.+
T Consensus        69 N~vRf~p~gelLASg~D~g~v~lWk~~~~~~-----------~-----~~d~-----e~~------~~ke~w~v~k~lr~  121 (434)
T KOG1009|consen   69 NVVRFSPDGELLASGGDGGEVFLWKQGDVRI-----------F-----DADT-----EAD------LNKEKWVVKKVLRG  121 (434)
T ss_pred             EEEEEcCCcCeeeecCCCceEEEEEecCcCC-----------c-----cccc-----hhh------hCccceEEEEEecc
Confidence            9999999999999999999999998754100           0     0000     000      00011122344577


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q 038577          348 HYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR  427 (860)
Q Consensus       348 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~  427 (860)
                      |...|..++|+|++.++++++.|+.+++||+..|.....+..|...+..++|.|-++++++-+.|...+.+.+...+...
T Consensus       122 h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~  201 (434)
T KOG1009|consen  122 HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIK  201 (434)
T ss_pred             cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999877777765443332


Q ss_pred             EeeCCCCCcEEEEEECCCCCEEEEEecC---CCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeC----CCc
Q 038577          428 TFTTPSSRQFVSLASDQSGEVICAGTLD---SFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSW----DKT  500 (860)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----dg~  500 (860)
                      ....               ..+.+....   +...++|.=++.+         .-...++|+|+|.++++.+.    ++.
T Consensus       202 ~~~~---------------~~m~~~~~~~~e~~s~rLfhDeTlk---------sFFrRlsfTPdG~llvtPag~~~~g~~  257 (434)
T KOG1009|consen  202 RHGL---------------DIMPAKAFNEREGKSTRLFHDETLK---------SFFRRLSFTPDGSLLVTPAGLFKVGGG  257 (434)
T ss_pred             eeee---------------eEeeecccCCCCcceeeeeecCchh---------hhhhhcccCCCCcEEEcccceeeeCCc
Confidence            2211               000011110   1122333222221         22345788999988887542    222


Q ss_pred             -----EEEEEccCCc-ceeEEcccCCCeEEEEEee------------------CCCEEEEEeCCCeEEEEeCCCCceeEE
Q 038577          501 -----VRLWNVFEGK-GSVESFPHTHDVLTVVYRP------------------DGRQLACSTLDGQIHFWDPLNGELMYT  556 (860)
Q Consensus       501 -----i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~------------------~~~~l~~~~~dg~i~iwd~~~~~~~~~  556 (860)
                           .++|+-...+ +...+.....++..+.|+|                  -+-.+|+++ ...|++||.++..++..
T Consensus       258 ~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~  336 (434)
T KOG1009|consen  258 VFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAV  336 (434)
T ss_pred             eeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEE
Confidence                 3444433222 2223333445566666665                  122455555 45699999999888887


Q ss_pred             EecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEE
Q 038577          557 IEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLL  616 (860)
Q Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~  616 (860)
                      ...-+-                   ..|+.++|++||.+|+..+.||...+--++..++-
T Consensus       337 v~nihy-------------------~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg  377 (434)
T KOG1009|consen  337 VDNIHY-------------------SAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG  377 (434)
T ss_pred             Eeeeee-------------------eeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence            655332                   25999999999999999999999888877776654

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.87  E-value=9.6e-21  Score=172.85  Aligned_cols=318  Identities=19%  Similarity=0.249  Sum_probs=225.0

Q ss_pred             cccCCCCceEEEEecC----CCCEEEEEEcCCeEEEEECCCceeEEEEee-----cCceeEEEEEeeC---CC-EEEEEE
Q 038577          259 DFSQAPSKVTACDYHR----GLDMVVVGFSNGVFGLYQMPDFVCIHLLSI-----SREKITTAVFNEL---GN-WLVFGC  325 (860)
Q Consensus       259 ~~~~~~~~v~~~~~~~----~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~-----~~~~i~~~~~s~~---~~-~l~~~~  325 (860)
                      ....+..+|..++|.+    +...+++......+.+|+.+...-++.++.     +......++|+-+   ++ ++++++
T Consensus        33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G  112 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG  112 (385)
T ss_pred             hhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence            3445667899999874    223344444556788888765443333322     3456777778754   33 455555


Q ss_pred             ccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEe---ecCCCceEEEEEee
Q 038577          326 AKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSSGFCFVTF---TEHTNAVTALHFMA  401 (860)
Q Consensus       326 ~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~i~~~~  401 (860)
                       ..|.|+|.|+.+++....+.+|...|+.+.+.|+. +++++++.|..|++|++++..++..+   .+|.+.|.++.|++
T Consensus       113 -~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~  191 (385)
T KOG1034|consen  113 -YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL  191 (385)
T ss_pred             -ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC
Confidence             55999999999999999999999999999999975 68889999999999999999999877   46999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeE
Q 038577          402 NNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVH  481 (860)
Q Consensus       402 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~  481 (860)
                      ++.+++++|.|.++++|++...+....+.       .+..++|++...-.-..   ...+.+..      +-.-|...|-
T Consensus       192 ~gd~i~ScGmDhslk~W~l~~~~f~~~lE-------~s~~~~~~~t~~pfpt~---~~~fp~fs------t~diHrnyVD  255 (385)
T KOG1034|consen  192 DGDRIASCGMDHSLKLWRLNVKEFKNKLE-------LSITYSPNKTTRPFPTP---KTHFPDFS------TTDIHRNYVD  255 (385)
T ss_pred             CCCeeeccCCcceEEEEecChhHHhhhhh-------hhcccCCCCccCcCCcc---cccccccc------ccccccchHH
Confidence            99999999999999999997543322222       11334444332111000   12222222      2234888899


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcc-CCcc-------------eeEEcccCCCeEEEE--EeeCCCEEEEEeCCCeEEE
Q 038577          482 GLVFSPTNATLASSSWDKTVRLWNVF-EGKG-------------SVESFPHTHDVLTVV--YRPDGRQLACSTLDGQIHF  545 (860)
Q Consensus       482 ~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~-------------~~~~~~~~~~v~~~~--~s~~~~~l~~~~~dg~i~i  545 (860)
                      |+.|-  |.++++-|-++.|..|..- -.+.             ..++.-....++-+.  |.|-+++||.|...|.|++
T Consensus       256 Cvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~v  333 (385)
T KOG1034|consen  256 CVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYV  333 (385)
T ss_pred             HHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEE
Confidence            99885  6889998989999999871 1111             112222445566555  4566889999999999999


Q ss_pred             EeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECC
Q 038577          546 WDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVA  611 (860)
Q Consensus       546 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~  611 (860)
                      ||++..++...-....                +..+..|...+||.||..|+...+|++|.-||.-
T Consensus       334 wdL~~~ep~~~ttl~~----------------s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  334 WDLDNNEPPKCTTLTH----------------SKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             EECCCCCCccCceEEe----------------ccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            9998876642111111                1224569999999999999999999999999853

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.87  E-value=1.4e-20  Score=171.50  Aligned_cols=380  Identities=16%  Similarity=0.229  Sum_probs=262.0

Q ss_pred             EEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEe-ecCCeEEEEeecccccC
Q 038577           98 AILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVG-SKDLAVRLFYVKEKLKG  176 (860)
Q Consensus        98 ~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~-~~dg~v~vwd~~~~~~~  176 (860)
                      -..|||+|+++|+..+..+.|-|..+-+.        ..+...-+.|..+.|..|.-+++.+ ..|+.|.+|++...   
T Consensus        13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~--------~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp---   81 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRYRLVIRDSETLQL--------HQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP---   81 (447)
T ss_pred             ceeECCCCCeeeeeeeeEEEEeccchhhH--------HHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecc---
Confidence            47899999999999888999998887652        2233345678889999998776654 67889999999877   


Q ss_pred             cccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeee
Q 038577          177 IHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLR  256 (860)
Q Consensus       177 ~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (860)
                         .-...+....+++.+++|+|||+.    .|.+...+-.|.+|++.+...                            
T Consensus        82 ---ew~ckIdeg~agls~~~WSPdgrh----iL~tseF~lriTVWSL~t~~~----------------------------  126 (447)
T KOG4497|consen   82 ---EWYCKIDEGQAGLSSISWSPDGRH----ILLTSEFDLRITVWSLNTQKG----------------------------  126 (447)
T ss_pred             ---eeEEEeccCCCcceeeeECCCcce----EeeeecceeEEEEEEecccee----------------------------
Confidence               456677778899999999999963    666777799999999988532                            


Q ss_pred             eccccCCCCceEEEEecCCCCEEEEEEcCCe---EEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEcc-CCcEE
Q 038577          257 KDDFSQAPSKVTACDYHRGLDMVVVGFSNGV---FGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK-LGQLL  332 (860)
Q Consensus       257 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~---i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~g~i~  332 (860)
                       ..++.....+..++|+|+|++.+..+.-..   +.+........+..+....-..+.+.|+|||.++++-..- +-.|.
T Consensus       127 -~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~  205 (447)
T KOG4497|consen  127 -YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY  205 (447)
T ss_pred             -EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee
Confidence             222233445788999999999988776522   2222223444556666677788999999999887754321 01111


Q ss_pred             EEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCce------------------
Q 038577          333 VWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAV------------------  394 (860)
Q Consensus       333 v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v------------------  394 (860)
                      .|.            ..-.+..++|+|.++++++|+.|+.+|+.+--+.+...++- |-..+                  
T Consensus       206 aYe------------~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~efl-hl~s~~dp~~~~~~ke~~~~~ql  272 (447)
T KOG4497|consen  206 AYE------------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFL-HLCSYHDPTLHLLEKETFSIVQL  272 (447)
T ss_pred             eee------------eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhc-cchhccCchhhhhhhhhcchhhh
Confidence            111            12357889999999999999999999998876655544432 22111                  


Q ss_pred             --EEEEEeeCCCEEEEEeCCCcEEEEEcc-------ccceeeEeeCCCCCcEEEEEECCCCCEEEEEecC-CCeEEEEEC
Q 038577          395 --TALHFMANNHSLLSASLDGTVRAWDLF-------RYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLD-SFEIFVWSM  464 (860)
Q Consensus       395 --~~i~~~~~~~~l~s~~~dg~i~~wd~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~i~v~d~  464 (860)
                        .++.|.|.. .=+.-.... =.+|...       +.+....+..+ ...+.-++|++|..++++-... ...+.+||+
T Consensus       273 ~~~cLsf~p~~-~~a~~~~~s-e~~YE~~~~pv~~~~lkp~tD~pnP-k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdl  349 (447)
T KOG4497|consen  273 LHHCLSFTPTD-LEAHIWEES-ETIYEQQMTPVKVHKLKPPTDFPNP-KCGAGKLAFSCDSTYAATRNDKYPNALWLWDL  349 (447)
T ss_pred             cccccccCCCc-cccCccccc-hhhhhhhhcceeeecccCCCCCCCc-ccccceeeecCCceEEeeecCCCCceEEEEec
Confidence              233333321 000000000 0111111       11111222222 3356678999999999886543 237999999


Q ss_pred             CCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCe
Q 038577          465 KTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQ  542 (860)
Q Consensus       465 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  542 (860)
                      +..++...+. ...+|....|.|....|+.+.....+++|...... ........-.|..+.|.-+|..++..+.|..
T Consensus       350 q~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~-~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  350 QNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR-VVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             hhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCce-EEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence            9887766665 57789999999999999888888889999976543 4444455578999999999999999988864

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.86  E-value=4.9e-20  Score=168.27  Aligned_cols=297  Identities=18%  Similarity=0.276  Sum_probs=219.9

Q ss_pred             EeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCC
Q 038577          184 LLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQA  263 (860)
Q Consensus       184 ~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (860)
                      ....|..+|..++|.+-...++...+++++ ...+.+++......                    ++.   .....-..+
T Consensus        33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~--------------------ir~---lq~y~D~d~   88 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGG--------------------IRL---LQSYADEDH   88 (385)
T ss_pred             hhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccc--------------------eee---eeeccCCCC
Confidence            455788999999997533222232455554 45677777665321                    000   111111134


Q ss_pred             CCceEEEEecCC----CCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc
Q 038577          264 PSKVTACDYHRG----LDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE  339 (860)
Q Consensus       264 ~~~v~~~~~~~~----~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~  339 (860)
                      ......++|+-+    ..++|+|+.-|.|++.|+.+++....+.+|...|..+.+.|+...++.+++.|..|++|++++.
T Consensus        89 ~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~  168 (385)
T KOG1034|consen   89 DESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD  168 (385)
T ss_pred             CcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC
Confidence            455666666544    3578899999999999999999999999999999999999999888888888899999999999


Q ss_pred             eEEEEe---cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE----------------------E------Eee
Q 038577          340 SYILKQ---QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCF----------------------V------TFT  388 (860)
Q Consensus       340 ~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~----------------------~------~~~  388 (860)
                      .++..+   .+|...|.++.|+++|.+|++++.|.++++|++...+..                      .      +-.
T Consensus       169 ~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~d  248 (385)
T KOG1034|consen  169 VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTD  248 (385)
T ss_pred             eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccc
Confidence            999887   579999999999999999999999999999998732110                      0      112


Q ss_pred             cCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccc-ccee-------------eEeeCCC-CCcEEEEEECCCCCEEEEEe
Q 038577          389 EHTNAVTALHFMANNHSLLSASLDGTVRAWDLFR-YRNF-------------RTFTTPS-SRQFVSLASDQSGEVICAGT  453 (860)
Q Consensus       389 ~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~-------------~~~~~~~-~~~~~~~~~~~~~~~l~~~~  453 (860)
                      .|...|-|+.|-.  .++++-+.++.|..|..-. .+.+             ..+..+. .......+++|-++.||+|.
T Consensus       249 iHrnyVDCvrw~g--d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gn  326 (385)
T KOG1034|consen  249 IHRNYVDCVRWFG--DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGN  326 (385)
T ss_pred             cccchHHHHHHHh--hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhcc
Confidence            3777777777764  5899999999999998722 1111             1122111 11245567889999999999


Q ss_pred             cCCCeEEEEECCCCceE--EEec--CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 038577          454 LDSFEIFVWSMKTGRLL--DILS--GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVF  507 (860)
Q Consensus       454 ~~~~~i~v~d~~~~~~~--~~~~--~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~  507 (860)
                      ..+ .+++||++..++.  .++.  .....|.+.+||.|+..|+....|++|.-||..
T Consensus       327 q~g-~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  327 QSG-KVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             CCC-cEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            998 9999999977653  1222  124679999999999999999999999999863

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=4.9e-19  Score=160.37  Aligned_cols=264  Identities=12%  Similarity=0.164  Sum_probs=199.3

Q ss_pred             eeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccC----eEEEEee-cCCceeEEEECC--CCCEEEEE-eCCeEE
Q 038577           46 TLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCH----VVLHRVR-FKYPVNAILFSP--NGKYIAVG-TGKLVQ  117 (860)
Q Consensus        46 ~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~----~~~~~~~-~~~~v~~~~fsp--dg~~la~~-~~~~i~  117 (860)
                      .+..+|..-|.++.|.+-|+++|+++.|+++.|||....    .+....+ |.+.|..+.|.+  -|+.+|++ .|+++.
T Consensus         7 pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~   86 (361)
T KOG2445|consen    7 PIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS   86 (361)
T ss_pred             ccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence            445689999999999999999999999999999997543    3334444 899999999966  58999999 899999


Q ss_pred             EEeCC--CCCcccceeEEEEEeeccCCCeEEEEEcCC--CCeEEEeecCCeEEEEeecccccCcccccc-------eEee
Q 038577          118 IWRSP--GFKKEVFAFELIRTLADCNDKVTALNWSPD--SNYLLVGSKDLAVRLFYVKEKLKGIHTNKP-------FLLL  186 (860)
Q Consensus       118 iwd~~--~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-------~~~~  186 (860)
                      ||.-.  ..+.....+....++....+.|+.+.|.|.  |-.||+++.||.+|||+.........-...       ....
T Consensus        87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~  166 (361)
T KOG2445|consen   87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG  166 (361)
T ss_pred             eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence            99863  222223456677888889999999999994  678999999999999987655211110111       1223


Q ss_pred             cCCCcEEEEEEccCCCCCccceEEEEcCC-----ccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecccc
Q 038577          187 GHRDSVVGCFFSVDKKTDKVNRIYTIARD-----CYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFS  261 (860)
Q Consensus       187 ~h~~~i~~~~~~~~~~~~~~~~l~s~~~d-----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (860)
                      .+..+..++.|+|...  ...+|+.++.+     +.+++|....+.                      +.|..  ...+.
T Consensus       167 ~~~~~~~CvsWn~sr~--~~p~iAvgs~e~a~~~~~~~Iye~~e~~----------------------rKw~k--va~L~  220 (361)
T KOG2445|consen  167 KNKQPCFCVSWNPSRM--HEPLIAVGSDEDAPHLNKVKIYEYNENG----------------------RKWLK--VAELP  220 (361)
T ss_pred             cccCcceEEeeccccc--cCceEEEEcccCCccccceEEEEecCCc----------------------ceeee--ehhcC
Confidence            4667778889986432  22267777765     478888876643                      24533  45566


Q ss_pred             CCCCceEEEEecCCC----CEEEEEEcCCeEEEEECCC--------------------ceeEEEEeecCceeEEEEEeeC
Q 038577          262 QAPSKVTACDYHRGL----DMVVVGFSNGVFGLYQMPD--------------------FVCIHLLSISREKITTAVFNEL  317 (860)
Q Consensus       262 ~~~~~v~~~~~~~~~----~~l~~~~~~g~i~~~~~~~--------------------~~~~~~~~~~~~~i~~~~~s~~  317 (860)
                      ++..+|+.++|.|+-    ..||+++.|| |+||++..                    -+.+..+..|.+.+..+.|+-.
T Consensus       221 d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt  299 (361)
T KOG2445|consen  221 DHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT  299 (361)
T ss_pred             CCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee
Confidence            899999999999974    4689999999 99999862                    1234456778889999999999


Q ss_pred             CCEEEEEEccCCcEEEEEcc
Q 038577          318 GNWLVFGCAKLGQLLVWEWR  337 (860)
Q Consensus       318 ~~~l~~~~~~~g~i~v~d~~  337 (860)
                      |..|.+++.+ |.+++|...
T Consensus       300 GtiLsStGdD-G~VRLWkan  318 (361)
T KOG2445|consen  300 GTILSSTGDD-GCVRLWKAN  318 (361)
T ss_pred             eeEEeecCCC-ceeeehhhh
Confidence            9988888765 999999643

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.86  E-value=1.1e-19  Score=165.93  Aligned_cols=340  Identities=12%  Similarity=0.111  Sum_probs=236.9

Q ss_pred             EEEe-CCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEE-EcCCCcEEEEEcccCeEEEEee-cCC
Q 038577           18 AVLS-QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLT-VDENQRCHFINLHCHVVLHRVR-FKY   94 (860)
Q Consensus        18 ~~~s-dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~-~~~d~~i~vwd~~~~~~~~~~~-~~~   94 (860)
                      ..|| +|+++|+.++.++.|-|..+-+...++ -.-..|..+.|+.|..++.. +..++.|.+|++...+--.++. ...
T Consensus        14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf-~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~a   92 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRYRLVIRDSETLQLHQLF-LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQA   92 (447)
T ss_pred             eeECCCCCeeeeeeeeEEEEeccchhhHHHHH-HHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCC
Confidence            5699 999999999999999999998876555 34577899999999987765 4678899999999888877777 678


Q ss_pred             ceeEEEECCCCCEEEEE--eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecc
Q 038577           95 PVNAILFSPNGKYIAVG--TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKE  172 (860)
Q Consensus        95 ~v~~~~fspdg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~  172 (860)
                      ++.+++|||||+.|...  -+-.|.||.+.+.+.        ..+.-.+..+..++|.|||++.+..+.-...-...+..
T Consensus        93 gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~--------~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~  164 (447)
T KOG4497|consen   93 GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG--------YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS  164 (447)
T ss_pred             cceeeeECCCcceEeeeecceeEEEEEEecccee--------EEecccccCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence            89999999999777666  678899999998763        33333455679999999999998876531111111111


Q ss_pred             cccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeE
Q 038577          173 KLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKW  252 (860)
Q Consensus       173 ~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (860)
                      ....   .....+.-.+-..+++.|+|||.     .|+         +||.--.                          
T Consensus       165 c~~W---~ll~~f~~dT~DltgieWsPdg~-----~la---------Vwd~~Le--------------------------  201 (447)
T KOG4497|consen  165 CKAW---ILLKEFKLDTIDLTGIEWSPDGN-----WLA---------VWDNVLE--------------------------  201 (447)
T ss_pred             hHHH---HHHHhcCCCcccccCceECCCCc-----EEE---------Eecchhh--------------------------
Confidence            0000   11222333344556788888887     444         3432110                          


Q ss_pred             EeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCC-------------------------------------
Q 038577          253 GLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPD-------------------------------------  295 (860)
Q Consensus       253 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~-------------------------------------  295 (860)
                         .+......+-.+..++|+|.++++++|+.|+.+++.+--+                                     
T Consensus       202 ---ykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs  278 (447)
T KOG4497|consen  202 ---YKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS  278 (447)
T ss_pred             ---heeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc
Confidence               0000111223577888888888888888888887754210                                     


Q ss_pred             -----------------------ceeEEEEe------ecCceeEEEEEeeCCCEEEEEEcc-CCcEEEEEccCceEEEEe
Q 038577          296 -----------------------FVCIHLLS------ISREKITTAVFNELGNWLVFGCAK-LGQLLVWEWRSESYILKQ  345 (860)
Q Consensus       296 -----------------------~~~~~~~~------~~~~~i~~~~~s~~~~~l~~~~~~-~g~i~v~d~~~~~~~~~~  345 (860)
                                             ....+.++      .....+..++|++|..++++-.++ .+.+.+||++..+....+
T Consensus       279 f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL  358 (447)
T KOG4497|consen  279 FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL  358 (447)
T ss_pred             cCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh
Confidence                                   00111111      112356789999999998876543 367899999887654433


Q ss_pred             cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCc
Q 038577          346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGT  414 (860)
Q Consensus       346 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~  414 (860)
                       ....+|....|.|....++.+.....+++|.......+.. ....-.|..+.|..+|..++..+.|..
T Consensus       359 -iQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  359 -IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             -hhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence             2345699999999999999888878899999765444443 334578999999999999999988864

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.85  E-value=4.6e-19  Score=172.26  Aligned_cols=437  Identities=14%  Similarity=0.112  Sum_probs=272.8

Q ss_pred             CEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee-cCCceeEEEEC
Q 038577           24 TKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-FKYPVNAILFS  102 (860)
Q Consensus        24 ~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~fs  102 (860)
                      .++++.+||++.+.+ +.++.......|.+.|.|-.|+|||.-|+++++||.|++|. .+|-...++. ...+|.|++|.
T Consensus        77 ~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~  154 (737)
T KOG1524|consen   77 TLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWA  154 (737)
T ss_pred             eEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEEC
Confidence            356677788888876 45666666668999999999999999999999999999998 4444333333 67899999999


Q ss_pred             CCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccc
Q 038577          103 PNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKP  182 (860)
Q Consensus       103 pdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~  182 (860)
                      |+..-++.+..+.+.|=.+.....       +-....|.+-|.++.|++.++.+++|++|-..+|||....       ..
T Consensus       155 p~S~~vl~c~g~h~~IKpL~~n~k-------~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~-------~L  220 (737)
T KOG1524|consen  155 PNSNSIVFCQGGHISIKPLAANSK-------IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA-------NL  220 (737)
T ss_pred             CCCCceEEecCCeEEEeecccccc-------eeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc-------cc
Confidence            999999999888888877765542       5678899999999999999999999999999999998765       56


Q ss_pred             eEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccC
Q 038577          183 FLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQ  262 (860)
Q Consensus       183 ~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (860)
                      ..-..|..+|++++|.|+ +     .++.++. .+++                                       ....
T Consensus       221 f~S~~~ey~ITSva~npd-~-----~~~v~S~-nt~R---------------------------------------~~~p  254 (737)
T KOG1524|consen  221 FTSAAEEYAITSVAFNPE-K-----DYLLWSY-NTAR---------------------------------------FSSP  254 (737)
T ss_pred             ccCChhccceeeeeeccc-c-----ceeeeee-eeee---------------------------------------ecCC
Confidence            777889999999999999 4     4444442 2222                                       1123


Q ss_pred             CCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEE
Q 038577          263 APSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYI  342 (860)
Q Consensus       263 ~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~  342 (860)
                      ..+.|..++|++||..+++|+..|.+.+-..-......                 ++.-++.... ..|.+-|+.++.. 
T Consensus       255 ~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~~-----------------~n~~~t~~~r-~~I~vrdV~~~v~-  315 (737)
T KOG1524|consen  255 RVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQLVS-----------------GNLKATSKSR-KSITVRDVATGVQ-  315 (737)
T ss_pred             CccceEEEEEcCCCceeeccccCceEEEeeeehhhhhh-----------------ccceeEeecc-ceEEeehhhhhHH-
Confidence            45689999999999999999999987664332111100                 0011111111 4455555555433 


Q ss_pred             EEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccc
Q 038577          343 LKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFR  422 (860)
Q Consensus       343 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~  422 (860)
                      .. -.....|...+..  -.+|+++.. ..|++|.-........+.+....+.-+.-+.+ .+++  ....++.+|....
T Consensus       316 d~-LE~p~rv~k~sL~--Y~hLvvaTs-~qvyiys~knwntpiiidgre~tr~lieq~ek-~fli--~dgsSi~lytyeg  388 (737)
T KOG1524|consen  316 DI-LEFPQRVVKFSLG--YGHLVVATS-LQVYIYSEKNWNTPIIIDGREDTRNLIEQGEK-YFLI--LDGSSIWLYTYEG  388 (737)
T ss_pred             HH-hhCccceeeeeec--eeEEEEEec-cEEEEEecCCccCcEEEeccccchhHhhhhhh-heEE--ecCcEEEEEEecC
Confidence            11 1223345544433  234544443 46888875543333333333332221211111 1111  1222344444321


Q ss_pred             cceeeEeeCCCC--CcEEEEEECCCCCEEEEEec-CCCeEEEEEC-CCCceEE--EecCcccCeEEEEEcC----CCCEE
Q 038577          423 YRNFRTFTTPSS--RQFVSLASDQSGEVICAGTL-DSFEIFVWSM-KTGRLLD--ILSGHEGPVHGLVFSP----TNATL  492 (860)
Q Consensus       423 ~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~-~~~~i~v~d~-~~~~~~~--~~~~h~~~v~~l~~s~----~~~~l  492 (860)
                       +.......|..  .....-.++-....|+.-.. |...+.+||. .+|+...  .+-.|...|..++...    +.+.+
T Consensus       389 -R~~~np~~Pg~~~dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkV  467 (737)
T KOG1524|consen  389 -RLHLNPRYPGSQIDLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKV  467 (737)
T ss_pred             -ceecCCCCCCcccccccceeeecccceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceE
Confidence             11111111110  00111122222333443222 2336788887 6666542  2223677777777654    45677


Q ss_pred             EEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCC
Q 038577          493 ASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLN  550 (860)
Q Consensus       493 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  550 (860)
                      +.-...+.++|=.++.-....+...-..-|..++|+.. .-+++|-.|+.+.||-..+
T Consensus       468 AFiDknrdl~ItsvKrfgkee~I~KiGTmVhtLawndt-tNiLcglqDt~fsVWy~pn  524 (737)
T KOG1524|consen  468 AFIDKNRDLFITSVKRFGKEEEIYKIGTMVHTLAWNDT-TNILCGLQDTCFSVWYYPN  524 (737)
T ss_pred             EEEecCCcEEEEeehhcCchhhhhhhhhhhhhhhhccc-cceeeeeccceEEEEEcCC
Confidence            77777788887776554433444455666888999854 4567788899999998754

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.85  E-value=1.2e-19  Score=168.86  Aligned_cols=241  Identities=20%  Similarity=0.382  Sum_probs=181.6

Q ss_pred             cCceeEEEEEeeCC-CEEEEEEccCCcEEEEEccC----------------ceEEEEecCcccCeEEEEEcCC-CCEEEE
Q 038577          305 SREKITTAVFNELG-NWLVFGCAKLGQLLVWEWRS----------------ESYILKQQGHYFDVNCLAYSPD-SQLLAT  366 (860)
Q Consensus       305 ~~~~i~~~~~s~~~-~~l~~~~~~~g~i~v~d~~~----------------~~~~~~~~~~~~~v~~~~~s~~-~~~l~~  366 (860)
                      +.+.+..+..++-+ ..++++-++.|.|.||++..                .+.+.++.+|...-..++|||- ...+++
T Consensus       150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Lls  229 (440)
T KOG0302|consen  150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLS  229 (440)
T ss_pred             cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccccc
Confidence            33444455555543 33333444569999999752                3456777889999999999993 225788


Q ss_pred             EeCCCcEEEEECCCCeeE---EEeecCCCceEEEEEeeCC-CEEEEEeCCCcEEEEEccccc-eeeEeeCCCCCcEEEEE
Q 038577          367 GADDNKVKVWTVSSGFCF---VTFTEHTNAVTALHFMANN-HSLLSASLDGTVRAWDLFRYR-NFRTFTTPSSRQFVSLA  441 (860)
Q Consensus       367 ~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~~~~~~~  441 (860)
                      |.--+.|++|...++.-.   ..+.+|+..|-.++|+|.. ..|++|+.||+|+|||++.+. ....+...+...|..+.
T Consensus       230 GDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVIS  309 (440)
T KOG0302|consen  230 GDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVIS  309 (440)
T ss_pred             CccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEE
Confidence            888889999998876432   3567799999999999965 688999999999999999873 33334456667899999


Q ss_pred             ECCCCCEEEEEecCCCeEEEEECCC---CceEEEecCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEEccCCcc------
Q 038577          442 SDQSGEVICAGTLDSFEIFVWSMKT---GRLLDILSGHEGPVHGLVFSPT-NATLASSSWDKTVRLWNVFEGKG------  511 (860)
Q Consensus       442 ~~~~~~~l~~~~~~~~~i~v~d~~~---~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~------  511 (860)
                      |+..-.+||+|+.+| ++.|||++.   ++++..++-|..+|+++.|+|. ...+++++.|.+|.+||+.-...      
T Consensus       310 Wnr~~~lLasG~DdG-t~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~  388 (440)
T KOG0302|consen  310 WNRREPLLASGGDDG-TLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQ  388 (440)
T ss_pred             ccCCcceeeecCCCc-eEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhcc
Confidence            999999888888888 999999984   6788999999999999999995 46788889999999999853221      


Q ss_pred             ----------eeEEccc--CCCeEEEEEeeC-CCEEEEEeCCCeEEEEe
Q 038577          512 ----------SVESFPH--THDVLTVVYRPD-GRQLACSTLDGQIHFWD  547 (860)
Q Consensus       512 ----------~~~~~~~--~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd  547 (860)
                                ...++.|  ...+..+.|+++ ..++++.+.|| +.||.
T Consensus       389 ~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  389 EAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             ccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence                      1112223  456788899985 34778888888 55654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.85  E-value=4e-19  Score=161.88  Aligned_cols=272  Identities=17%  Similarity=0.288  Sum_probs=205.6

Q ss_pred             eeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEE------------EEec-CcccCeEEEEEc-------CCCCEEEEE
Q 038577          308 KITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYI------------LKQQ-GHYFDVNCLAYS-------PDSQLLATG  367 (860)
Q Consensus       308 ~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~------------~~~~-~~~~~v~~~~~s-------~~~~~l~~~  367 (860)
                      -...+.|+|||..+++.+.+ ..+.+|++...-.-            ..++ .....|...+|-       |+..++++.
T Consensus        51 f~kgckWSPDGSciL~~sed-n~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s  129 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSED-NCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS  129 (406)
T ss_pred             hhccceeCCCCceEEeeccc-CeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence            45678999999999988776 89999987532110            0111 112345566664       577899999


Q ss_pred             eCCCcEEEEECCCCeeEEEeec--CCC---ceEEEEEeeCCCEEEEEeCCCcEEEEEc-cccceeeEee------CCCCC
Q 038577          368 ADDNKVKVWTVSSGFCFVTFTE--HTN---AVTALHFMANNHSLLSASLDGTVRAWDL-FRYRNFRTFT------TPSSR  435 (860)
Q Consensus       368 ~~dg~i~iwd~~~~~~~~~~~~--~~~---~v~~i~~~~~~~~l~s~~~dg~i~~wd~-~~~~~~~~~~------~~~~~  435 (860)
                      +.+.-|++||.-+|+....+..  |..   ...+++|+|||.+|++| ....|++||+ +.++......      .....
T Consensus       130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g  208 (406)
T KOG2919|consen  130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG  208 (406)
T ss_pred             cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence            9999999999999988877654  333   45689999999988866 5679999999 4444332222      12234


Q ss_pred             cEEEEEECCCCC-EEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEEccCCc-ce
Q 038577          436 QFVSLASDQSGE-VICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSW-DKTVRLWNVFEGK-GS  512 (860)
Q Consensus       436 ~~~~~~~~~~~~-~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~-~~  512 (860)
                      -+.+++++|-.. .+++++... .+-||.-..+.++..+.+|.+.|+.+.|.++|+.|.+|.. |-.|..||++... .+
T Consensus       209 iisc~a~sP~~~~~~a~gsY~q-~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv  287 (406)
T KOG2919|consen  209 IISCFAFSPMDSKTLAVGSYGQ-RVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV  287 (406)
T ss_pred             eeeeeeccCCCCcceeeecccc-eeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence            578899999765 788888777 8999999999999999999999999999999999999875 6789999998654 33


Q ss_pred             eEEcccCC---CeEEEEEeeCCCEEEEEeCCCeEEEEeCCC-CceeEEEecccccCCCccccccccccccCCCCcEEEEE
Q 038577          513 VESFPHTH---DVLTVVYRPDGRQLACSTLDGQIHFWDPLN-GELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLC  588 (860)
Q Consensus       513 ~~~~~~~~---~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~  588 (860)
                      ..+..|..   .-.-....|++++|++|+.||.|++||+++ |..+..+..+.+                    .++.++
T Consensus       288 ~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd--------------------~vNgvs  347 (406)
T KOG2919|consen  288 YALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD--------------------TVNGVS  347 (406)
T ss_pred             hhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc--------------------ccccee
Confidence            44444444   223345568999999999999999999998 676777766665                    589999


Q ss_pred             EecCCCEEEEecCC
Q 038577          589 YSADGSYILAGGSS  602 (860)
Q Consensus       589 ~s~~g~~l~~~~~d  602 (860)
                      +.|--..+++++..
T Consensus       348 lnP~mpilatssGq  361 (406)
T KOG2919|consen  348 LNPIMPILATSSGQ  361 (406)
T ss_pred             cCcccceeeeccCc
Confidence            99997778877643

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=1.6e-19  Score=171.90  Aligned_cols=295  Identities=13%  Similarity=0.204  Sum_probs=208.8

Q ss_pred             eeEEEECCCCCEEEEE----eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcC-------CCCeEEEeecCCe
Q 038577           96 VNAILFSPNGKYIAVG----TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSP-------DSNYLLVGSKDLA  164 (860)
Q Consensus        96 v~~~~fspdg~~la~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-------d~~~l~s~~~dg~  164 (860)
                      ...+..-|...+|+++    ....+.+|=.+.....+.   +.+.+- -...-.|++|..       -|+++|.|+.|..
T Consensus       128 ~de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlY---vHHD~i-lpafPLC~ewld~~~~~~~~gNyvAiGtmdp~  203 (463)
T KOG0270|consen  128 KDEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENLY---VHHDFI-LPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPE  203 (463)
T ss_pred             cccceeccCCcEEEEeeccCCceEEEEEEEcCCCccee---Eeccee-ccCcchhhhhhhcCCCCCCCcceEEEeccCce
Confidence            3456667877777777    223444443333321110   111110 012234566633       2589999999999


Q ss_pred             EEEEeecccccCccc---------------ccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCC
Q 038577          165 VRLFYVKEKLKGIHT---------------NKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGK  229 (860)
Q Consensus       165 v~vwd~~~~~~~~~~---------------~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~  229 (860)
                      |.|||++-.....+.               .......+|++.|.++.|...-++    .|++++.|.+|++||++++.+ 
T Consensus       204 IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n----VLaSgsaD~TV~lWD~~~g~p-  278 (463)
T KOG0270|consen  204 IEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN----VLASGSADKTVKLWDVDTGKP-  278 (463)
T ss_pred             eEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce----eEEecCCCceEEEEEcCCCCc-
Confidence            999998755211000               011223468888888888776654    999999999999999999865 


Q ss_pred             CccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCC-CEEEEEEcCCeEEEEECCCceeEEEEeecCce
Q 038577          230 IDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGL-DMVVVGFSNGVFGLYQMPDFVCIHLLSISREK  308 (860)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~  308 (860)
                                                 ...+..|...|.++.|+|.. ..|++|+.|+++.+.|.+........-...+.
T Consensus       279 ---------------------------~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~  331 (463)
T KOG0270|consen  279 ---------------------------KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGE  331 (463)
T ss_pred             ---------------------------ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccc
Confidence                                       34455788999999999964 67889999999999999864444333334568


Q ss_pred             eEEEEEeeCCCEEEEEEccCCcEEEEEccCc-eEEEEecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCee--E
Q 038577          309 ITTAVFNELGNWLVFGCAKLGQLLVWEWRSE-SYILKQQGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSSGFC--F  384 (860)
Q Consensus       309 i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~-~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~--~  384 (860)
                      |..++|.|.....++++.++|.++-+|++.. +++.++..|.++|.++++++.- .++++++.|+.|++|++.....  +
T Consensus       332 VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v  411 (463)
T KOG0270|consen  332 VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSV  411 (463)
T ss_pred             eEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccc
Confidence            9999999999999988899999999999875 8899999999999999998854 4788999999999999864332  2


Q ss_pred             EEeecCCCceEEEEEeeCCC-EEEEEeCCCcEEEEEcccccee
Q 038577          385 VTFTEHTNAVTALHFMANNH-SLLSASLDGTVRAWDLFRYRNF  426 (860)
Q Consensus       385 ~~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~  426 (860)
                      ....-.-+...|.++.|+-. .++.||..+.+++||+.+...+
T Consensus       412 ~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  412 KEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             ccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            22111223466777777653 5677778888999999776544

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.85  E-value=4.8e-19  Score=161.39  Aligned_cols=285  Identities=19%  Similarity=0.249  Sum_probs=215.3

Q ss_pred             cEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEE
Q 038577          191 SVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTAC  270 (860)
Q Consensus       191 ~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  270 (860)
                      ...++.|+|||.     .|++.+.|..+.+|++..........        ........       ...-...+..|...
T Consensus        51 f~kgckWSPDGS-----ciL~~sedn~l~~~nlP~dlys~~~~--------~~~~~~~~-------~~~r~~eg~tvydy  110 (406)
T KOG2919|consen   51 FLKGCKWSPDGS-----CILSLSEDNCLNCWNLPFDLYSKKAD--------GPLNFSKH-------LSYRYQEGETVYDY  110 (406)
T ss_pred             hhccceeCCCCc-----eEEeecccCeeeEEecChhhcccCCC--------Cccccccc-------eeEEeccCCEEEEE
Confidence            345689999999     99999999999999987543211100        00000000       01111233456666


Q ss_pred             Eec-------CCCCEEEEEEcCCeEEEEECCCceeEEEEeecC--c---eeEEEEEeeCCCEEEEEEccCCcEEEEEc-c
Q 038577          271 DYH-------RGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISR--E---KITTAVFNELGNWLVFGCAKLGQLLVWEW-R  337 (860)
Q Consensus       271 ~~~-------~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~--~---~i~~~~~s~~~~~l~~~~~~~g~i~v~d~-~  337 (860)
                      +|-       |+..++++.+.+.-|.+||.-+++....++.-.  +   ...+++|+|||..|+++..  ..|+++|+ +
T Consensus       111 ~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk--rcirvFdt~R  188 (406)
T KOG2919|consen  111 CWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK--RCIRVFDTSR  188 (406)
T ss_pred             EeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc--ceEEEeeccC
Confidence            664       678899999999999999999998877665422  2   4578999999999998754  79999998 4


Q ss_pred             CceEEEE-------ecCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEE
Q 038577          338 SESYILK-------QQGHYFDVNCLAYSPDSQ-LLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSA  409 (860)
Q Consensus       338 ~~~~~~~-------~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~  409 (860)
                      .|.....       ..+..+-+.|++|+|-.. .+++|+....+-||.-..+.++..+.+|.+.|+.+.|.++|+.|.+|
T Consensus       189 pGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsG  268 (406)
T KOG2919|consen  189 PGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSG  268 (406)
T ss_pred             CCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccc
Confidence            4432211       123467789999999654 89999999999999988999999999999999999999999999998


Q ss_pred             eC-CCcEEEEEcccccee-eEeeCCC--CCcEEEEEECCCCCEEEEEecCCCeEEEEECCC-CceEEEecCcccCeEEEE
Q 038577          410 SL-DGTVRAWDLFRYRNF-RTFTTPS--SRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT-GRLLDILSGHEGPVHGLV  484 (860)
Q Consensus       410 ~~-dg~i~~wd~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~-~~~~~~~~~h~~~v~~l~  484 (860)
                      .. |..|-.||++..+.. ..+..+.  ..+-.-+...|++++|+.|+.+| .|.+||+++ |..+..+..|...++.++
T Consensus       269 aRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG-~V~vwdlk~~gn~~sv~~~~sd~vNgvs  347 (406)
T KOG2919|consen  269 ARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDG-SVRVWDLKDLGNEVSVTGNYSDTVNGVS  347 (406)
T ss_pred             ccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCc-cEEEEecCCCCCccccccccccccccee
Confidence            75 678999999875432 2222211  22334566789999999999999 999999998 777888888999999999


Q ss_pred             EcCCCCEEEEEeCC
Q 038577          485 FSPTNATLASSSWD  498 (860)
Q Consensus       485 ~s~~~~~l~s~~~d  498 (860)
                      ++|--.++|+++..
T Consensus       348 lnP~mpilatssGq  361 (406)
T KOG2919|consen  348 LNPIMPILATSSGQ  361 (406)
T ss_pred             cCcccceeeeccCc
Confidence            99998888888744

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.84  E-value=1.8e-19  Score=159.43  Aligned_cols=288  Identities=18%  Similarity=0.210  Sum_probs=204.8

Q ss_pred             ccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecc
Q 038577          180 NKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDD  259 (860)
Q Consensus       180 ~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (860)
                      ...+.+++|.+.++++.|..++      +|+++..-|.+++|++.+...                            ...
T Consensus         5 dP~fvLRp~~~~v~s~~fqa~~------rL~sg~~~G~V~~w~lqt~r~----------------------------~~~   50 (323)
T KOG0322|consen    5 DPFFVLRPHSSSVTSVLFQANE------RLMSGLSVGIVKMWVLQTERD----------------------------LPL   50 (323)
T ss_pred             CCeeEeccccchheehhhccch------hhhcccccceEEEEEeecCcc----------------------------chh
Confidence            4567888999999999998877      799999999999999998543                            122


Q ss_pred             cc-CCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEee-----CCC---EEEEEEcc-CC
Q 038577          260 FS-QAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNE-----LGN---WLVFGCAK-LG  329 (860)
Q Consensus       260 ~~-~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~-----~~~---~l~~~~~~-~g  329 (860)
                      +. .+...|+.+...|+ +.+.+-+.|+.+.+|++.....+..-..   .+.++.|.+     .++   .++..-.. ..
T Consensus        51 ~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si---~~nslgFCrfSl~~~~k~~eqll~yp~rgsd  126 (323)
T KOG0322|consen   51 IRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSI---VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSD  126 (323)
T ss_pred             hhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeee---eccccccccceeccCCCcchhheecCCcccc
Confidence            22 34556888888887 5688889999999999976554433222   223333322     211   11211111 11


Q ss_pred             cEEEEEccCceEEEEe----cCcccCeEEEEEcC-CCC--EEEEEeCCCcEEEEECCCCee----------EEEeecCCC
Q 038577          330 QLLVWEWRSESYILKQ----QGHYFDVNCLAYSP-DSQ--LLATGADDNKVKVWTVSSGFC----------FVTFTEHTN  392 (860)
Q Consensus       330 ~i~v~d~~~~~~~~~~----~~~~~~v~~~~~s~-~~~--~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~~~  392 (860)
                      .+.+-|......+...    .+..+.+.|..+.. ++.  ++++|.++|.+.+||+.++..          ......|..
T Consensus       127 e~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~q  206 (323)
T KOG0322|consen  127 ETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQ  206 (323)
T ss_pred             hhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccC
Confidence            1222222222222221    22345566666433 233  567888999999999998733          334456999


Q ss_pred             ceEEEEEeeCCCEEEEEeCCCcEEEEEccccc---eeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCce
Q 038577          393 AVTALHFMANNHSLLSASLDGTVRAWDLFRYR---NFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRL  469 (860)
Q Consensus       393 ~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~  469 (860)
                      +|.++.+.+.-..=++++.+..+..|++....   .++....-....+..+.+-||++.+|+++.|+ .|++|+.++..+
T Consensus       207 pvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~-RiRVyswrtl~p  285 (323)
T KOG0322|consen  207 PVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDH-RIRVYSWRTLNP  285 (323)
T ss_pred             cceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCC-cEEEEEeccCCc
Confidence            99999998876677888888899999986541   11111122233578889999999999999999 999999999999


Q ss_pred             EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 038577          470 LDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNV  506 (860)
Q Consensus       470 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~  506 (860)
                      +..++-|.+.|.+++|+|+...+|.++.|++|.+|++
T Consensus       286 LAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  286 LAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            9999999999999999999999999999999999986

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.84  E-value=2.4e-18  Score=170.87  Aligned_cols=474  Identities=16%  Similarity=0.174  Sum_probs=268.2

Q ss_pred             eCCCEEEEEEccCCcEEEEEccCceEEEEecC---cccCeEEEEE------cC--------------CCCEEEEEeCCCc
Q 038577          316 ELGNWLVFGCAKLGQLLVWEWRSESYILKQQG---HYFDVNCLAY------SP--------------DSQLLATGADDNK  372 (860)
Q Consensus       316 ~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~---~~~~v~~~~~------s~--------------~~~~l~~~~~dg~  372 (860)
                      |...+++...++ |.+++|+...++....+..   -.+..++..|      +|              +...++-|...|.
T Consensus         3 ~~~~~~A~~~~~-g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    3 PALDYFALSTGD-GRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             chhheEeecCCC-CeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            344566666655 9999999999988777632   1233444444      22              3457888889999


Q ss_pred             EEEEECCCCeeEEEee--cCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEE
Q 038577          373 VKVWTVSSGFCFVTFT--EHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVIC  450 (860)
Q Consensus       373 i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  450 (860)
                      |.+|+...++....+.  .|.+.|.++.++.+-..|.+++.|+.+..|+....+.++.+..... .+.+++++|||..++
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~-~~~sl~is~D~~~l~  160 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP-LVSSLCISPDGKILL  160 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC-ccceEEEcCCCCEEE
Confidence            9999999999888776  5889999999998888999999999999999999888887776543 678999999999999


Q ss_pred             EEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCC-----CCEEE-EEeCCCcEEEEEccCCcce----eEEcccCC
Q 038577          451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPT-----NATLA-SSSWDKTVRLWNVFEGKGS----VESFPHTH  520 (860)
Q Consensus       451 ~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~-----~~~l~-s~~~dg~i~iwd~~~~~~~----~~~~~~~~  520 (860)
                      +++.   +|.+||+++++.+..|.||.++|.+++|.-+     |.++. +...+.-+.+|-+......    ..+.....
T Consensus       161 ~as~---~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~~di  237 (541)
T KOG4547|consen  161 TASR---QIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTVPDI  237 (541)
T ss_pred             eccc---eEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheeeccCCC
Confidence            8876   8999999999999999999999999999876     56654 4455666888876542211    11111222


Q ss_pred             CeEE-EEEeeCCC---EEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEE
Q 038577          521 DVLT-VVYRPDGR---QLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYI  596 (860)
Q Consensus       521 ~v~~-~~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l  596 (860)
                      +++. -....|+.   .+++...+|.+..+..+--..... ....                     .-..++++.+| ++
T Consensus       238 pv~~ds~~~ed~~~~l~lAst~~~g~v~~~~~nl~~l~~~-~~~k---------------------v~~~~~~~s~g-~~  294 (541)
T KOG4547|consen  238 PVTSDSGLLEDGTIPLVLASTLIPGIVHLKLSNLIILLHK-KIVK---------------------VNGYNADSSKG-FL  294 (541)
T ss_pred             CeEeccccccccccceEEeeeccCceeeeccccHHHHhcC-cccc---------------------ccceeeecccc-hh
Confidence            2222 22222333   345555556555543221111110 0000                     01223333333 22


Q ss_pred             EEecCCCeEEEEECCCceEEEEEeecccccccceeeeccCCCCCCCCCCccccCCCCCccccccccccCccccCCCCCCC
Q 038577          597 LAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALP  676 (860)
Q Consensus       597 ~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  676 (860)
                      ++.-.+.. ..-.+.-|...+.+-..-..... ..-.+..+.+...+....        ....+...+...     +.  
T Consensus       295 a~~~~~~~-~~~~l~~g~~~~ps~~~vsln~~-~~l~l~~R~l~~~~~~~~--------~~~k~~~rqv~~-----n~--  357 (541)
T KOG4547|consen  295 AALFGIDK-AHALLAYGSLVNPSFVRVSLNLG-QKLHLMDRDLSGSGKLKL--------VTSKEGKRQVVL-----NS--  357 (541)
T ss_pred             hhhcccch-hhhhhhcccccCchhhhhhhhhc-chhhhhhhhccCCcccce--------eeeecccceeec-----ch--
Confidence            21111100 00000001111000000000000 000000000000000000        000000000000     00  


Q ss_pred             CCCCCccceeEEEECCCCCeEEEecccc-EEEEecCCccccCCcccCccCCHHHHHhhcCcCCcHHHHHHHHhcCChHHH
Q 038577          677 NRGRPTIQTKCLKIAPTGRNFVAATTEG-VLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPKRALILSLRLNEDNLI  755 (860)
Q Consensus       677 ~~~~~~~~~~~~~~spdg~~~~~~~~~g-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  755 (860)
                       ..++.++..--+..|+-..+.+-...| +.++..+.   ..  .+..+.+..+.............+.+++..++..++
T Consensus       358 -~~k~~~~~~~q~~~p~~~~l~v~~~~g~iEv~~ear---l~--~l~i~~~~~~~k~~~~tll~s~~l~Q~L~srd~~~~  431 (541)
T KOG4547|consen  358 -VAKLGEAEVIQEEPPLTEDLPVLTKGGDIEVSTEAR---LS--ALDINLTSNADKSDESTLLASVSLNQALSSRDSHIL  431 (541)
T ss_pred             -hhhhcchhhhcccCcchhcchhhhcCCcceeeehhh---hh--hcccccccccchhhhhccchhhhhhhhhcccccccc
Confidence             000000000000011111111111111 11211110   00  001111111111122234566788999999999999


Q ss_pred             HHHhHhcCCCccchhcccCCHHHHHHHHHHHHhhhccCC-ChhhHHHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHH
Q 038577          756 KKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLLESCP-HLEFMLRWCQELCKTHGNTIQQNSRNLLPSLKSLQKSITR  834 (860)
Q Consensus       756 ~~~l~~~~~~~i~~~~~~l~~~~~~~ll~~l~~~l~~~~-~~~~~~~~l~~~l~~H~~~l~~~~~~~~~~l~~l~~~~~~  834 (860)
                      .++|...++..|+.++.++|++.+.+|++.+..++++++ +....+.|+++.|..|+.++++.++ .+..+..+.+...+
T Consensus       432 ~~Vl~s~d~~lik~tv~rme~st~~pll~ela~rlq~~~~~~~~~l~w~k~~l~~h~~yl~sv~~-~~~~l~~~~~~~~~  510 (541)
T KOG4547|consen  432 TDVLISRDEELIKSTVLRMEESTAPPLLEELAPRLQSRASRGRILLVWLKTRLTSHNSYLSSVPD-QLETLSGKMQKDLR  510 (541)
T ss_pred             hhhhccCChHHHHHHHhhcChhhccchhccchhhhccccccCchhhhhhhhhhhcccceeecCcc-hhhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999854 8999999999999999999999874 44444444444444


Q ss_pred             HHHHHHH
Q 038577          835 IHQDLAD  841 (860)
Q Consensus       835 ~~~~l~~  841 (860)
                      +.+.+..
T Consensus       511 ~ae~~~~  517 (541)
T KOG4547|consen  511 TAEQLGH  517 (541)
T ss_pred             HHHHHHH
Confidence            4444433

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=2.5e-19  Score=170.65  Aligned_cols=235  Identities=22%  Similarity=0.327  Sum_probs=180.2

Q ss_pred             CCCEEEEEEccCCcEEEEEccCceEE---------------------EEecCcccCeEEEEEcCC-CCEEEEEeCCCcEE
Q 038577          317 LGNWLVFGCAKLGQLLVWEWRSESYI---------------------LKQQGHYFDVNCLAYSPD-SQLLATGADDNKVK  374 (860)
Q Consensus       317 ~~~~l~~~~~~~g~i~v~d~~~~~~~---------------------~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~  374 (860)
                      .|+++++++.+ ..|.|||+.-...+                     ....+|...|..++|+.+ .+.||+|+.|.+|+
T Consensus       191 ~gNyvAiGtmd-p~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~  269 (463)
T KOG0270|consen  191 AGNYVAIGTMD-PEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK  269 (463)
T ss_pred             CcceEEEeccC-ceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence            36788888877 89999998522110                     001368888888888775 45889999999999


Q ss_pred             EEECCCCeeEEEeecCCCceEEEEEeeCC-CEEEEEeCCCcEEEEEccccce-eeEeeCCCCCcEEEEEECCCCCEEEEE
Q 038577          375 VWTVSSGFCFVTFTEHTNAVTALHFMANN-HSLLSASLDGTVRAWDLFRYRN-FRTFTTPSSRQFVSLASDQSGEVICAG  452 (860)
Q Consensus       375 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~  452 (860)
                      +||+.++++..++..|.+.|.++.|+|.. .+|++|+.|+++.+.|.+.... -..+.  ....+-.++|.|.....+..
T Consensus       270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk--~~g~VEkv~w~~~se~~f~~  347 (463)
T KOG0270|consen  270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK--FDGEVEKVAWDPHSENSFFV  347 (463)
T ss_pred             EEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE--eccceEEEEecCCCceeEEE
Confidence            99999999999999999999999999864 7899999999999999985221 11222  23467889999988766666


Q ss_pred             ecCCCeEEEEECCCC-ceEEEecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEEccCCcceeE--EcccCCCeEEEEEe
Q 038577          453 TLDSFEIFVWSMKTG-RLLDILSGHEGPVHGLVFSPTN-ATLASSSWDKTVRLWNVFEGKGSVE--SFPHTHDVLTVVYR  528 (860)
Q Consensus       453 ~~~~~~i~v~d~~~~-~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s  528 (860)
                      +.+.|.++-+|++.. +++.+++.|.++|.++++++.- .++++++.|+.|++|++........  .....+...|.++.
T Consensus       348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~  427 (463)
T KOG0270|consen  348 STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALD  427 (463)
T ss_pred             ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccC
Confidence            655559999999974 9999999999999999999854 5688999999999999876543111  11122335666777


Q ss_pred             eCCC-EEEEEeCCCeEEEEeCCCCcee
Q 038577          529 PDGR-QLACSTLDGQIHFWDPLNGELM  554 (860)
Q Consensus       529 ~~~~-~l~~~~~dg~i~iwd~~~~~~~  554 (860)
                      |+-. +++.|+..+.++|||+.+...+
T Consensus       428 ~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  428 PDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             CCcceEEEecCccceEEEeecccChhH
Confidence            7544 6778888888999999877654

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=3.9e-20  Score=197.16  Aligned_cols=284  Identities=20%  Similarity=0.309  Sum_probs=219.7

Q ss_pred             EEEEecCCCC-EEEEEE----------cCCeEEEEECCC--ce----eEEEEeecCceeEEEEEeeCCCE---EEEEEcc
Q 038577          268 TACDYHRGLD-MVVVGF----------SNGVFGLYQMPD--FV----CIHLLSISREKITTAVFNELGNW---LVFGCAK  327 (860)
Q Consensus       268 ~~~~~~~~~~-~l~~~~----------~~g~i~~~~~~~--~~----~~~~~~~~~~~i~~~~~s~~~~~---l~~~~~~  327 (860)
                      -.++|+|++. ++++|+          .+.++.+|.+..  .+    ....+. ...+...++|.+.|..   +++++.+
T Consensus        10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~e   88 (1049)
T KOG0307|consen   10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLE   88 (1049)
T ss_pred             ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecccc
Confidence            4567888875 444443          244556665432  22    111121 2347889999998877   6777788


Q ss_pred             CCcEEEEEccCc------eEEEEecCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEEEee--cCCCceEEEE
Q 038577          328 LGQLLVWEWRSE------SYILKQQGHYFDVNCLAYSPDSQ-LLATGADDNKVKVWTVSSGFCFVTFT--EHTNAVTALH  398 (860)
Q Consensus       328 ~g~i~v~d~~~~------~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~i~  398 (860)
                      ||.|.+||...-      ..+.+...|.+.|..+.|++.+. .||+|+.||.|.|||+...+.-....  ...+.|.+++
T Consensus        89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls  168 (1049)
T KOG0307|consen   89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS  168 (1049)
T ss_pred             CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence            899999998652      23445578999999999999765 99999999999999998754433331  2456899999


Q ss_pred             EeeCC-CEEEEEeCCCcEEEEEccccceeeEeeCCCC-CcEEEEEECCCCC-EEEEEecCC--CeEEEEECCC-CceEEE
Q 038577          399 FMANN-HSLLSASLDGTVRAWDLFRYRNFRTFTTPSS-RQFVSLASDQSGE-VICAGTLDS--FEIFVWSMKT-GRLLDI  472 (860)
Q Consensus       399 ~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~l~~~~~~~--~~i~v~d~~~-~~~~~~  472 (860)
                      |+..- +.|++++.+|.+.|||++..+.+..+..... ..+..++|+|+.. .+++++.|.  -.|.+||++. ..+++.
T Consensus       169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~  248 (1049)
T KOG0307|consen  169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI  248 (1049)
T ss_pred             cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh
Confidence            98754 5788999999999999999887777665544 4578899999874 455555443  3799999885 457788


Q ss_pred             ecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCC-EEEEEeCCCeEEEEeCCC
Q 038577          473 LSGHEGPVHGLVFSPTN-ATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGR-QLACSTLDGQIHFWDPLN  550 (860)
Q Consensus       473 ~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~  550 (860)
                      +.+|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+......+..+.|.|... .+++++-||.|.||.+.+
T Consensus       249 ~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~  328 (1049)
T KOG0307|consen  249 LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG  328 (1049)
T ss_pred             hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence            89999999999999966 8899999999999999999998888888889999999999655 888899999999999876


Q ss_pred             Cc
Q 038577          551 GE  552 (860)
Q Consensus       551 ~~  552 (860)
                      ..
T Consensus       329 ~~  330 (1049)
T KOG0307|consen  329 TD  330 (1049)
T ss_pred             CC
Confidence            54

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.83  E-value=7.2e-17  Score=164.48  Aligned_cols=322  Identities=16%  Similarity=0.133  Sum_probs=220.4

Q ss_pred             CEEE-EEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEE
Q 038577          277 DMVV-VGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCL  355 (860)
Q Consensus       277 ~~l~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~  355 (860)
                      ++++ +-..+|.+.+.|..+.+.+..+......-..+.|+|||+++++++. +|.|.++|+.+++.+.++.... ...++
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~~v~~i~~G~-~~~~i   83 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR-DGTVSVIDLATGKVVATIKVGG-NPRGI   83 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET-TSEEEEEETTSSSEEEEEE-SS-EEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC-CCeEEEEECCcccEEEEEecCC-CcceE
Confidence            3444 4556799999999999999999887666566889999999999876 4999999999999988886544 36789


Q ss_pred             EEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEeecC-------CCceEEEEEeeCCCEEEEEeC-CCcEEEEEcccccee
Q 038577          356 AYSPDSQLLATGA-DDNKVKVWTVSSGFCFVTFTEH-------TNAVTALHFMANNHSLLSASL-DGTVRAWDLFRYRNF  426 (860)
Q Consensus       356 ~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~  426 (860)
                      ++++||++++++. .++.+.++|.++.+.+..+...       ...+.++..+|....++..-. .+.|.+.|....+..
T Consensus        84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~  163 (369)
T PF02239_consen   84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL  163 (369)
T ss_dssp             EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred             EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence            9999999998775 5899999999999998877543       346778888888886665554 478888887776554


Q ss_pred             eEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec----CcccCeEEEEEcCC----------CCEE
Q 038577          427 RTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS----GHEGPVHGLVFSPT----------NATL  492 (860)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~----~h~~~v~~l~~s~~----------~~~l  492 (860)
                      ..-............++|++++++++......+-++|.++++.+..+.    .|..++..+ .+|.          +...
T Consensus       164 ~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~  242 (369)
T PF02239_consen  164 KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFA  242 (369)
T ss_dssp             EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSE
T ss_pred             ceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeecccccee
Confidence            433333444677899999999988876655599999999998877653    244444443 2222          2222


Q ss_pred             EEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEE----eCCCeEEEEeCCCCceeEEEecccccCCCcc
Q 038577          493 ASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACS----TLDGQIHFWDPLNGELMYTIEGRRDISGGRL  568 (860)
Q Consensus       493 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  568 (860)
                      ++.-....+.+||..+.+.+..+.....+ ..+..+|+++++.+.    ...+.|.++|..+.+....+.....      
T Consensus       243 ~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~------  315 (369)
T PF02239_consen  243 IPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPG------  315 (369)
T ss_dssp             EEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT------
T ss_pred             cccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCC------
Confidence            22222345667888888877777666566 888889999999998    4457899999999988877764432      


Q ss_pred             ccccccccccCCCCcEEEEEEecCCCEEEEecC--CCeEEEEECCCceEEEEEee
Q 038577          569 MTDRRSAANSSSGKCFTTLCYSADGSYILAGGS--SKYICMYDVADQVLLRRFQI  621 (860)
Q Consensus       569 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~--dg~v~vwd~~~~~~~~~~~~  621 (860)
                                   ..+..+.|++||+++..+..  ++.|.+||..+.+++++++.
T Consensus       316 -------------~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~~  357 (369)
T PF02239_consen  316 -------------KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIPV  357 (369)
T ss_dssp             ---------------EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE-
T ss_pred             -------------CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEEe
Confidence                         24899999999997765543  44799999999999998873

...

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=6e-20  Score=195.75  Aligned_cols=290  Identities=12%  Similarity=0.168  Sum_probs=221.6

Q ss_pred             eEEEEcCCCC-EEEEE----------cCCCcEEEEEcc--cC----eEEEEeecCCceeEEEECCCCCE----EEEE-eC
Q 038577           56 CRIAVSPDGT-FLLTV----------DENQRCHFINLH--CH----VVLHRVRFKYPVNAILFSPNGKY----IAVG-TG  113 (860)
Q Consensus        56 ~~va~spdg~-~la~~----------~~d~~i~vwd~~--~~----~~~~~~~~~~~v~~~~fspdg~~----la~~-~~  113 (860)
                      ..+||||++. ++|+|          +.+.++.||.+.  +.    +.+..+....+-+.++|++.|..    ||.| .|
T Consensus        10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~ed   89 (1049)
T KOG0307|consen   10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLED   89 (1049)
T ss_pred             ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccC
Confidence            4678999987 66654          335566777554  22    34445556777899999997765    7777 89


Q ss_pred             CeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCC-eEEEeecCCeEEEEeecccccCcccccceEe--ecCCC
Q 038577          114 KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSN-YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLL--LGHRD  190 (860)
Q Consensus       114 ~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~--~~h~~  190 (860)
                      |.|.+||...-. ......++.+...|.+.|..+.|++... .||+|+.||.|.|||+...      ..+...  ....+
T Consensus        90 G~I~ly~p~~~~-~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~------~tP~~~~~~~~~~  162 (1049)
T KOG0307|consen   90 GNIVLYDPASII-ANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKP------ETPFTPGSQAPPS  162 (1049)
T ss_pred             CceEEecchhhc-cCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCc------CCCCCCCCCCCcc
Confidence            999999987631 1112335778889999999999999775 9999999999999999886      233333  23567


Q ss_pred             cEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEE
Q 038577          191 SVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTAC  270 (860)
Q Consensus       191 ~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  270 (860)
                      .|.+++|...-..    .|++++.+|.+.+||++.....+...                          .......+..+
T Consensus       163 eI~~lsWNrkvqh----ILAS~s~sg~~~iWDlr~~~pii~ls--------------------------~~~~~~~~S~l  212 (1049)
T KOG0307|consen  163 EIKCLSWNRKVSH----ILASGSPSGRAVIWDLRKKKPIIKLS--------------------------DTPGRMHCSVL  212 (1049)
T ss_pred             cceEeccchhhhH----HhhccCCCCCceeccccCCCcccccc--------------------------cCCCccceeee
Confidence            8999999876553    78899999999999999864311110                          01111357889


Q ss_pred             EecCCCC-EEEEEEcC---CeEEEEECCCc-eeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEe
Q 038577          271 DYHRGLD-MVVVGFSN---GVFGLYQMPDF-VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ  345 (860)
Q Consensus       271 ~~~~~~~-~l~~~~~~---g~i~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~  345 (860)
                      +|+|+.. .+++++.|   -.|.+||++.. ...+.++.|...|.++.|++.+..++.++..|+.+.+|+.++++.+..+
T Consensus       213 ~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~  292 (1049)
T KOG0307|consen  213 AWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGEL  292 (1049)
T ss_pred             eeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeec
Confidence            9999874 46666655   47999998743 4567788999999999999999777778888899999999999999999


Q ss_pred             cCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCe
Q 038577          346 QGHYFDVNCLAYSPDSQ-LLATGADDNKVKVWTVSSGF  382 (860)
Q Consensus       346 ~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~  382 (860)
                      ......+..+.|+|... .++.++-||.|.||.+....
T Consensus       293 p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  293 PAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            88888899999999776 78888999999999987543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.82  E-value=5.1e-17  Score=151.51  Aligned_cols=238  Identities=15%  Similarity=0.270  Sum_probs=184.3

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCC--CcEEEEEccccceee
Q 038577          350 FDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD--GTVRAWDLFRYRNFR  427 (860)
Q Consensus       350 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d--g~i~~wd~~~~~~~~  427 (860)
                      ..+..+.|+.+...|..|+.|| .++|+.+..............|..+-|+..  .++..+.+  +.++++++.+...+.
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~IC   82 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTIC   82 (391)
T ss_pred             cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceEE
Confidence            3466777999999999999886 578877654442222223345566666654  55555544  359999998888888


Q ss_pred             EeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC---cccCeEEEEEcCCCCEEEEEe--CCCcEE
Q 038577          428 TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG---HEGPVHGLVFSPTNATLASSS--WDKTVR  502 (860)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~---h~~~v~~l~~s~~~~~l~s~~--~dg~i~  502 (860)
                      .+..+.  .+.++.+..+  .|++.-.+  .|+|||+++.++++++..   +...+.++++++.+.++|.-+  ..|.|.
T Consensus        83 e~~fpt--~IL~VrmNr~--RLvV~Lee--~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~  156 (391)
T KOG2110|consen   83 EIFFPT--SILAVRMNRK--RLVVCLEE--SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV  156 (391)
T ss_pred             EEecCC--ceEEEEEccc--eEEEEEcc--cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence            777765  5677777654  45555555  699999999999988753   445566666666777888643  368999


Q ss_pred             EEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCe-EEEEeCCCCceeEEEecccccCCCccccccccccccCCC
Q 038577          503 LWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQ-IHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSG  581 (860)
Q Consensus       503 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  581 (860)
                      +||+.+-+....+..|.+++.+++|+++|.+||++++.|+ |+||.+.+|+.++.++.....                  
T Consensus       157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~------------------  218 (391)
T KOG2110|consen  157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYP------------------  218 (391)
T ss_pred             EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCcee------------------
Confidence            9999999888888899999999999999999999999998 899999999999998754321                  


Q ss_pred             CcEEEEEEecCCCEEEEecCCCeEEEEECCCce
Q 038577          582 KCFTTLCYSADGSYILAGGSSKYICMYDVADQV  614 (860)
Q Consensus       582 ~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~  614 (860)
                      ..|.+++|+||+++|++.++.++|.+|.++...
T Consensus       219 ~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  219 VSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             eEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            249999999999999999999999999998754

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.82  E-value=1.6e-18  Score=161.46  Aligned_cols=251  Identities=16%  Similarity=0.208  Sum_probs=189.4

Q ss_pred             cCCceeEEEECCCC-CEEEEE--eCCeEEEEeCCCCC---------cccceeEEEEEeeccCCCeEEEEEcCCC-CeEEE
Q 038577           92 FKYPVNAILFSPNG-KYIAVG--TGKLVQIWRSPGFK---------KEVFAFELIRTLADCNDKVTALNWSPDS-NYLLV  158 (860)
Q Consensus        92 ~~~~v~~~~fspdg-~~la~~--~~~~i~iwd~~~~~---------~~~~~~~~~~~~~~h~~~v~~l~~s~d~-~~l~s  158 (860)
                      |.+.++.+.-++-+ ..+++.  ..|.|+||++...-         .....+.++.++.+|.+.=..++|||-. ..|++
T Consensus       150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Lls  229 (440)
T KOG0302|consen  150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLS  229 (440)
T ss_pred             cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccccc
Confidence            66677777777765 333333  77999999976321         1123345688899999999999999933 34888


Q ss_pred             eecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCC
Q 038577          159 GSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSE  238 (860)
Q Consensus       159 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~  238 (860)
                      |..-+.|++|...++   .+......+.+|+..|..++|+|....    .|++|+-||+|++||++.+..+         
T Consensus       230 GDc~~~I~lw~~~~g---~W~vd~~Pf~gH~~SVEDLqWSptE~~----vfaScS~DgsIrIWDiRs~~~~---------  293 (440)
T KOG0302|consen  230 GDCVKGIHLWEPSTG---SWKVDQRPFTGHTKSVEDLQWSPTEDG----VFASCSCDGSIRIWDIRSGPKK---------  293 (440)
T ss_pred             CccccceEeeeeccC---ceeecCccccccccchhhhccCCccCc----eEEeeecCceEEEEEecCCCcc---------
Confidence            888889999999876   233455677889999999999998775    9999999999999999986430         


Q ss_pred             CCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCC---ceeEEEEeecCceeEEEEEe
Q 038577          239 PPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPD---FVCIHLLSISREKITTAVFN  315 (860)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~---~~~~~~~~~~~~~i~~~~~s  315 (860)
                                       .......|.+.|..+.|+..-.+||+|+.||.+.|||++.   ++++..++.|..+|+++.|+
T Consensus       294 -----------------~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~  356 (440)
T KOG0302|consen  294 -----------------AAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWH  356 (440)
T ss_pred             -----------------ceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEec
Confidence                             1122256888999999999999999999999999999874   56778999999999999999


Q ss_pred             eCCCEEEEEEccCCcEEEEEccCceE-----------E-----EEecCc--ccCeEEEEEcCCC-CEEEEEeCCCcEEEE
Q 038577          316 ELGNWLVFGCAKLGQLLVWEWRSESY-----------I-----LKQQGH--YFDVNCLAYSPDS-QLLATGADDNKVKVW  376 (860)
Q Consensus       316 ~~~~~l~~~~~~~g~i~v~d~~~~~~-----------~-----~~~~~~--~~~v~~~~~s~~~-~~l~~~~~dg~i~iw  376 (860)
                      |.....+.+++.|.+|.+||+....-           +     +.+.-|  ...+..+.|+++- .++++.+.|| +.||
T Consensus       357 p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  357 PHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             cccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence            98888777777789999999853211           0     011122  3457778888863 3677777776 3444

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=2.9e-17  Score=143.69  Aligned_cols=271  Identities=14%  Similarity=0.208  Sum_probs=198.2

Q ss_pred             ceEEEEecCCCCEEEEEEcCCeEEEEECCC----------ceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEE
Q 038577          266 KVTACDYHRGLDMVVVGFSNGVFGLYQMPD----------FVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWE  335 (860)
Q Consensus       266 ~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~----------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d  335 (860)
                      .|.+-+++|.++++++|..+|.|.++.+.+          ...+...+.|.+++..++|.  ...|+++ .+ |.|+-|.
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~-gd-G~V~gw~   87 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSG-GD-GLVYGWE   87 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeec-cC-ceEEEee
Confidence            355567899999999999999999998863          22345568899999999998  3444444 44 9999998


Q ss_pred             ccCceE------EEEe--cCc-----ccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeC
Q 038577          336 WRSESY------ILKQ--QGH-----YFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMAN  402 (860)
Q Consensus       336 ~~~~~~------~~~~--~~~-----~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~  402 (860)
                      +.....      ..+.  +.|     -..|+++...|..+.+++++.|+.++.||+++|+..+++++|++-|.++.--..
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~  167 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA  167 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence            865432      1111  112     235889999998888888889999999999999999999999999999998555


Q ss_pred             CCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcE-------EEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC
Q 038577          403 NHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQF-------VSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG  475 (860)
Q Consensus       403 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~  475 (860)
                      ...+++|+.||++++||.++.++.+.+........       .-.+..-+..++++|+..  .+.+|++++.+....+. 
T Consensus       168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp--~lslwhLrsse~t~vfp-  244 (325)
T KOG0649|consen  168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP--KLSLWHLRSSESTCVFP-  244 (325)
T ss_pred             CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC--ceeEEeccCCCceEEEe-
Confidence            66899999999999999999999887764332211       114445566788877665  69999999999988886 


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCC-CEEEEEeCCCeEEEE
Q 038577          476 HEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDG-RQLACSTLDGQIHFW  546 (860)
Q Consensus       476 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw  546 (860)
                      -..++..+.|  +.+.+++++..+.|.-|.+.. .............++..|+... +++-.++....+.|+
T Consensus       245 ipa~v~~v~F--~~d~vl~~G~g~~v~~~~l~G-vl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  245 IPARVHLVDF--VDDCVLIGGEGNHVQSYTLNG-VLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             cccceeEeee--ecceEEEeccccceeeeeecc-EEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence            5677888888  456788888888999998743 2222233333445555554433 344445556666665

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=8.7e-19  Score=161.25  Aligned_cols=251  Identities=17%  Similarity=0.310  Sum_probs=188.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEee--CCCEEEEEeCCCcEEEEEccccceeeEeeCCC--CCcE
Q 038577          362 QLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMA--NNHSLLSASLDGTVRAWDLFRYRNFRTFTTPS--SRQF  437 (860)
Q Consensus       362 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~--~~~~  437 (860)
                      ..+|++...|.|++||..++..+..++++...+..+.|..  ....+.+++.||+|++||++.......+....  +.+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            5788899999999999999999999999999999999977  45789999999999999999876665554333  3467


Q ss_pred             EEEEECCCCCEEEEEecC---CCeEEEEECCCCce-EEE-ecCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEEccCCc-
Q 038577          438 VSLASDQSGEVICAGTLD---SFEIFVWSMKTGRL-LDI-LSGHEGPVHGLVFSPT-NATLASSSWDKTVRLWNVFEGK-  510 (860)
Q Consensus       438 ~~~~~~~~~~~l~~~~~~---~~~i~v~d~~~~~~-~~~-~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~-  510 (860)
                      .+++....++.+++|..-   .-.+.+||++..+. +.. ...|...|+++.|+|. ..+|++||.||-|.+||+.... 
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            788887788899988652   22799999997765 444 4679999999999995 5789999999999999997653 


Q ss_pred             --ceeEEcccCCCeEEEEEeeCC-CEEEEEeCCCeEEEEeCCCCceeEEEec--------------------ccccCCCc
Q 038577          511 --GSVESFPHTHDVLTVVYRPDG-RQLACSTLDGQIHFWDPLNGELMYTIEG--------------------RRDISGGR  567 (860)
Q Consensus       511 --~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------------~~~~~~~~  567 (860)
                        .+.....+...|..+.|..++ +.+.+-+..+...+|+++.+.....+..                    |.......
T Consensus       201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~  280 (376)
T KOG1188|consen  201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDT  280 (376)
T ss_pred             hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcce
Confidence              244555688889999999887 3577778889999999988764433322                    11100000


Q ss_pred             ccc--------------c--------cccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 038577          568 LMT--------------D--------RRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVAD  612 (860)
Q Consensus       568 ~~~--------------~--------~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~  612 (860)
                      ...              +        ........+..-|.++.|...+.++.+||+||.+.+|..+.
T Consensus       281 ~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d  347 (376)
T KOG1188|consen  281 CALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED  347 (376)
T ss_pred             EEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence            000              0        00000111233467788888899999999999999999743

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.81  E-value=1.7e-16  Score=163.72  Aligned_cols=276  Identities=12%  Similarity=0.132  Sum_probs=183.3

Q ss_pred             EEcCCCcEEEEEccc-Ce--EEEEeecCCceeEEEECCCCCEEEEE--eCCeEEEEeCCCCCcccceeEEEEEeeccCCC
Q 038577           69 TVDENQRCHFINLHC-HV--VLHRVRFKYPVNAILFSPNGKYIAVG--TGKLVQIWRSPGFKKEVFAFELIRTLADCNDK  143 (860)
Q Consensus        69 ~~~~d~~i~vwd~~~-~~--~~~~~~~~~~v~~~~fspdg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~  143 (860)
                      +...++.|.+||+.+ ++  .+..+...+....++++||+++|+++  .++.|.+|++.....    +....... ..+.
T Consensus         7 ~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~----l~~~~~~~-~~~~   81 (330)
T PRK11028          7 ASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA----LTFAAESP-LPGS   81 (330)
T ss_pred             EcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc----eEEeeeec-CCCC
Confidence            346689999999964 43  55556666778899999999998777  578999999973211    11122222 2345


Q ss_pred             eEEEEEcCCCCeEEEeec-CCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEE-cCCccEEEe
Q 038577          144 VTALNWSPDSNYLLVGSK-DLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTI-ARDCYMFSW  221 (860)
Q Consensus       144 v~~l~~s~d~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~-~~dg~i~~w  221 (860)
                      ...++|+|+++++++++. ++.|.+|+++.....  ......+ .+......++++|+++     +++++ ..++.|.+|
T Consensus        82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~--~~~~~~~-~~~~~~~~~~~~p~g~-----~l~v~~~~~~~v~v~  153 (330)
T PRK11028         82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIP--VAPIQII-EGLEGCHSANIDPDNR-----TLWVPCLKEDRIRLF  153 (330)
T ss_pred             ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCC--CCceeec-cCCCcccEeEeCCCCC-----EEEEeeCCCCEEEEE
Confidence            678999999998888764 789999999743111  0111122 2334467788999998     77554 456999999


Q ss_pred             eecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEc-CCeEEEEECCC--c--
Q 038577          222 GFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFS-NGVFGLYQMPD--F--  296 (860)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~g~i~~~~~~~--~--  296 (860)
                      ++++... .....                    ...... ........+.|+|++++++++.. ++.|.+|++..  +  
T Consensus       154 d~~~~g~-l~~~~--------------------~~~~~~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~  211 (330)
T PRK11028        154 TLSDDGH-LVAQE--------------------PAEVTT-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI  211 (330)
T ss_pred             EECCCCc-ccccC--------------------CCceec-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE
Confidence            9976221 00000                    000000 11234567899999999988876 89999999963  2  


Q ss_pred             eeEEEEeecC------ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCc---ccCeEEEEEcCCCCEEEEE
Q 038577          297 VCIHLLSISR------EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGH---YFDVNCLAYSPDSQLLATG  367 (860)
Q Consensus       297 ~~~~~~~~~~------~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~  367 (860)
                      +.+..+....      .....+.++|+|++++++...++.|.+|++.......++..+   ......++++|+|++|+++
T Consensus       212 ~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va  291 (330)
T PRK11028        212 ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAA  291 (330)
T ss_pred             EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEE
Confidence            2333333211      123358899999999998777799999998654322222121   1245678999999999987


Q ss_pred             eC-CCcEEEEECC
Q 038577          368 AD-DNKVKVWTVS  379 (860)
Q Consensus       368 ~~-dg~i~iwd~~  379 (860)
                      .. +++|.+|+++
T Consensus       292 ~~~~~~v~v~~~~  304 (330)
T PRK11028        292 GQKSHHISVYEID  304 (330)
T ss_pred             EccCCcEEEEEEc
Confidence            76 8899999874

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.81  E-value=6.3e-19  Score=156.02  Aligned_cols=287  Identities=17%  Similarity=0.240  Sum_probs=201.6

Q ss_pred             eEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEec-CcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038577          298 CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQ-GHYFDVNCLAYSPDSQLLATGADDNKVKVW  376 (860)
Q Consensus       298 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  376 (860)
                      +...++.+...++++.|-.+++ |+.+... |.+.+|++.+......++ .+...|+.+..-|+ ..+.+-+.|+.+.+|
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~-G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw   82 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANER-LMSGLSV-GIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILW   82 (323)
T ss_pred             CeeEeccccchheehhhccchh-hhccccc-ceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEE
Confidence            3445667888899999988887 5555444 999999999998888887 57778999998887 468888999999999


Q ss_pred             ECCCCeeEEEeecCCCceEEEEEeeCC-----C---EEEEEeCCCc--EEEEEccccceeeEeeC---CCCCcEEEEEE-
Q 038577          377 TVSSGFCFVTFTEHTNAVTALHFMANN-----H---SLLSASLDGT--VRAWDLFRYRNFRTFTT---PSSRQFVSLAS-  442 (860)
Q Consensus       377 d~~~~~~~~~~~~~~~~v~~i~~~~~~-----~---~l~s~~~dg~--i~~wd~~~~~~~~~~~~---~~~~~~~~~~~-  442 (860)
                      ++.-+..+.   .|+-.+.++.|++..     +   .++..-..|.  +.+-|......++....   +....+.+..+ 
T Consensus        83 ~ia~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~  159 (323)
T KOG0322|consen   83 TIAYSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD  159 (323)
T ss_pred             EccCcceEE---EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence            997654332   244445555555421     1   1111100010  11122111111111111   11223444442 


Q ss_pred             -CCCCCEEEEEecCCCeEEEEECCCC----------ceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcc
Q 038577          443 -DQSGEVICAGTLDSFEIFVWSMKTG----------RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKG  511 (860)
Q Consensus       443 -~~~~~~l~~~~~~~~~i~v~d~~~~----------~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~  511 (860)
                       .....+++.++...+.+.+||+.++          +.......|..+|.++.+.+.-..=++++.+..+..|++.....
T Consensus       160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g  239 (323)
T KOG0322|consen  160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG  239 (323)
T ss_pred             ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence             2223445555555459999999998          34444557999999999988666667888888899999876532


Q ss_pred             ee----EEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEE
Q 038577          512 SV----ESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTL  587 (860)
Q Consensus       512 ~~----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l  587 (860)
                      ..    +..-....+..+..-||++.+|+++.|+.|+||..++.+++..+.-|..                    .|.++
T Consensus       240 slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa--------------------gvn~v  299 (323)
T KOG0322|consen  240 SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA--------------------GVNAV  299 (323)
T ss_pred             cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc--------------------ceeEE
Confidence            11    2223455688999999999999999999999999999999999999986                    59999


Q ss_pred             EEecCCCEEEEecCCCeEEEEEC
Q 038577          588 CYSADGSYILAGGSSKYICMYDV  610 (860)
Q Consensus       588 ~~s~~g~~l~~~~~dg~v~vwd~  610 (860)
                      +|+||...+++++.|++|.+|++
T Consensus       300 Afspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  300 AFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EeCCCCchhhhccCCceEEeeec
Confidence            99999999999999999999986

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.81  E-value=1.1e-16  Score=149.41  Aligned_cols=296  Identities=17%  Similarity=0.239  Sum_probs=204.4

Q ss_pred             eeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCC--CcEEEEECCCCeeEE
Q 038577          308 KITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADD--NKVKVWTVSSGFCFV  385 (860)
Q Consensus       308 ~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~iwd~~~~~~~~  385 (860)
                      .+..+.|+.+...|..++.+  ..++|+................|.-+-|+..  ++|..+.+  +.+++++...+..+.
T Consensus         7 ti~~~~~Nqd~~~lsvGs~~--Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~IC   82 (391)
T KOG2110|consen    7 TINFIGFNQDSTLLSVGSKD--GYKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTIC   82 (391)
T ss_pred             ceeeeeeccceeEEEccCCC--ceeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceEE
Confidence            45555677776666666543  3456665543332222222233555556644  45554443  458999998887777


Q ss_pred             EeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCC--CCCcEEEEEECCCCCEEEE-EecCCCeEEEE
Q 038577          386 TFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTP--SSRQFVSLASDQSGEVICA-GTLDSFEIFVW  462 (860)
Q Consensus       386 ~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~-~~~~~~~i~v~  462 (860)
                      .+. ...+|.++.++.+  +|+++=.+ .|.+||+++.+.+.++...  +...+.++.+++.+.+++. ++.+.|.|.+|
T Consensus        83 e~~-fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~  158 (391)
T KOG2110|consen   83 EIF-FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF  158 (391)
T ss_pred             EEe-cCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence            764 5678999998755  56666554 4999999999999888765  4555777777778889887 44455699999


Q ss_pred             ECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCc-EEEEEccCCcceeEEcc--cCCCeEEEEEeeCCCEEEEEeC
Q 038577          463 SMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKT-VRLWNVFEGKGSVESFP--HTHDVLTVVYRPDGRQLACSTL  539 (860)
Q Consensus       463 d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~  539 (860)
                      |+.+-+.+..+..|.+++.+++|+++|.+|||+|+.|+ |||+.+.+++.+.++..  ....|.+++|+|++++|++.+.
T Consensus       159 d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~  238 (391)
T KOG2110|consen  159 DTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN  238 (391)
T ss_pred             EcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecC
Confidence            99999999999999999999999999999999999987 79999999998888774  3556889999999999999999


Q ss_pred             CCeEEEEeCCCCceeEEEecccccCC--Ccccc----------------ccccc---cccCCCCcEEEEEEecCCCEEEE
Q 038577          540 DGQIHFWDPLNGELMYTIEGRRDISG--GRLMT----------------DRRSA---ANSSSGKCFTTLCYSADGSYILA  598 (860)
Q Consensus       540 dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~----------------~~~~~---~~~~~~~~i~~l~~s~~g~~l~~  598 (860)
                      .++|++|.+..-. ...........+  +....                .+..+   .+......+..+.-.+...++.+
T Consensus       239 TeTVHiFKL~~~~-~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~v  317 (391)
T KOG2110|consen  239 TETVHIFKLEKVS-NNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLV  317 (391)
T ss_pred             CCeEEEEEecccc-cCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEE
Confidence            9999999987543 111110000000  00000                00000   01111123444443457889999


Q ss_pred             ecCCCeEEEEECCC
Q 038577          599 GGSSKYICMYDVAD  612 (860)
Q Consensus       599 ~~~dg~v~vwd~~~  612 (860)
                      ++.||.++.|.++.
T Consensus       318 as~dG~~y~y~l~~  331 (391)
T KOG2110|consen  318 ASYDGHLYSYRLPP  331 (391)
T ss_pred             EEcCCeEEEEEcCC
Confidence            99999999998864

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.81  E-value=6.2e-15  Score=141.89  Aligned_cols=425  Identities=14%  Similarity=0.127  Sum_probs=260.0

Q ss_pred             CCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEE-------cCCCcEEEEEcccCeEEEEeecCC
Q 038577           22 QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTV-------DENQRCHFINLHCHVVLHRVRFKY   94 (860)
Q Consensus        22 dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~-------~~d~~i~vwd~~~~~~~~~~~~~~   94 (860)
                      -|..|++.+...+..+++.+|+.+.+. .|-+-|+...|+|||+.+|..       ...+.+.+.+.+.|+..+..-+..
T Consensus        49 ~GD~IiFt~~DdlWe~slk~g~~~rit-S~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTyfGr  127 (668)
T COG4946          49 YGDRIIFTCCDDLWEYSLKDGKPLRIT-SGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITYFGR  127 (668)
T ss_pred             cCcEEEEEechHHHHhhhccCCeeEEe-cccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEEecc
Confidence            577787777788888999999988876 678889999999999999972       224678888989998877655555


Q ss_pred             ceeEE-EECCCCCEEEEEeC-----CeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEE
Q 038577           95 PVNAI-LFSPNGKYIAVGTG-----KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLF  168 (860)
Q Consensus        95 ~v~~~-~fspdg~~la~~~~-----~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vw  168 (860)
                      +-+.+ -|+|||+.|++..-     .--.+|.+.....        ..-.-.-++.+.+.+- || .++.|-.-      
T Consensus       128 ~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~--------~~e~LnlGpathiv~~-dg-~ivigRnt------  191 (668)
T COG4946         128 RFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGI--------KTEPLNLGPATHIVIK-DG-IIVIGRNT------  191 (668)
T ss_pred             ccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCc--------eeeeccCCceeeEEEe-CC-EEEEccCc------
Confidence            55544 59999999988721     1122232222110        0001112223333332 22 22222111      


Q ss_pred             eecccccCcccccceEeecCCCcEEEEEE-ccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcc
Q 038577          169 YVKEKLKGIHTNKPFLLLGHRDSVVGCFF-SVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPER  247 (860)
Q Consensus       169 d~~~~~~~~~~~~~~~~~~h~~~i~~~~~-~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (860)
                                 .....+.+-.+.-...-| +.++.            .+.-++.|+++.                     
T Consensus       192 -----------ydLP~WK~YkGGtrGklWis~d~g------------~tFeK~vdl~~~---------------------  227 (668)
T COG4946         192 -----------YDLPHWKGYKGGTRGKLWISSDGG------------KTFEKFVDLDGN---------------------  227 (668)
T ss_pred             -----------ccCcccccccCCccceEEEEecCC------------cceeeeeecCCC---------------------
Confidence                       112222222222222222 11111            112233333332                     


Q ss_pred             eeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCC--eEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEE
Q 038577          248 RVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNG--VFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGC  325 (860)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g--~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  325 (860)
                                         |++-..- .++.......+|  +++--|+. ++-++.... -..-.+-..+.||+.+++..
T Consensus       228 -------------------vS~PmIV-~~RvYFlsD~eG~GnlYSvdld-GkDlrrHTn-FtdYY~R~~nsDGkrIvFq~  285 (668)
T COG4946         228 -------------------VSSPMIV-GERVYFLSDHEGVGNLYSVDLD-GKDLRRHTN-FTDYYPRNANSDGKRIVFQN  285 (668)
T ss_pred             -------------------cCCceEE-cceEEEEecccCccceEEeccC-CchhhhcCC-chhccccccCCCCcEEEEec
Confidence                               1111111 111222333333  33333342 222211110 01233344567899998876


Q ss_pred             ccCCcEEEEEccCceEEEEecC---c---cc-----CeEEEE-EcC-CCCEEEEEeCCCcEEEEECCCCeeEEEeecCCC
Q 038577          326 AKLGQLLVWEWRSESYILKQQG---H---YF-----DVNCLA-YSP-DSQLLATGADDNKVKVWTVSSGFCFVTFTEHTN  392 (860)
Q Consensus       326 ~~~g~i~v~d~~~~~~~~~~~~---~---~~-----~v~~~~-~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  392 (860)
                      .  |.|.+||..+......--+   .   ..     +..-+. |++ +|.+++..+. |...+.+...+..++.  +|..
T Consensus       286 ~--GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~  360 (668)
T COG4946         286 A--GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQV--GKKG  360 (668)
T ss_pred             C--CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeEEc--CCCC
Confidence            5  8999999887654332111   0   00     000111 222 6888988887 7888888766655543  4677


Q ss_pred             ceEEEEEeeCCCEEEEEeCCC-cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEE
Q 038577          393 AVTALHFMANNHSLLSASLDG-TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLD  471 (860)
Q Consensus       393 ~v~~i~~~~~~~~l~s~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~  471 (860)
                      .|.-..+..++..++.|..|| .+-++|..+++..+...  .-..+.++..+++|++++++.... ++.++|+.+|....
T Consensus       361 ~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~--~lg~I~av~vs~dGK~~vvaNdr~-el~vididngnv~~  437 (668)
T COG4946         361 GVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK--DLGNIEAVKVSPDGKKVVVANDRF-ELWVIDIDNGNVRL  437 (668)
T ss_pred             ceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC--CccceEEEEEcCCCcEEEEEcCce-EEEEEEecCCCeeE
Confidence            788888888888899999999 89999998876544332  334789999999999999988777 99999999998877


Q ss_pred             EecCcccCeEEEEEcCCCCEEEEEeCCC----cEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEe
Q 038577          472 ILSGHEGPVHGLVFSPTNATLASSSWDK----TVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACST  538 (860)
Q Consensus       472 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  538 (860)
                      .-+...+-|+.+.|||+++++|-+--+|    .|+++|+.+++ +.......+.=.+-+|.||+++|.--+
T Consensus       438 idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K-iy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         438 IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK-IYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe-EEEecCCcccccCcccCCCCcEEEEEe
Confidence            7677788999999999999999887665    58999998887 444444444445668888888776543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.81  E-value=1.1e-16  Score=165.20  Aligned_cols=267  Identities=10%  Similarity=0.095  Sum_probs=185.9

Q ss_pred             EEEEcCCeEEEEECCC-ce--eEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccC-ceE--EEEecCcccCeE
Q 038577          280 VVGFSNGVFGLYQMPD-FV--CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRS-ESY--ILKQQGHYFDVN  353 (860)
Q Consensus       280 ~~~~~~g~i~~~~~~~-~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~-~~~--~~~~~~~~~~v~  353 (860)
                      ++...++.|.+|++.+ ++  .+..+.. .+....++++|+++.|++++..++.|.+|++.. +..  .... .......
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~   83 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPT   83 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCce
Confidence            3446689999999964 32  3444433 356778999999999988887779999999873 332  2222 2233567


Q ss_pred             EEEEcCCCCEEEEEeC-CCcEEEEECCC-Ce---eEEEeecCCCceEEEEEeeCCCEEEEEe-CCCcEEEEEccccceee
Q 038577          354 CLAYSPDSQLLATGAD-DNKVKVWTVSS-GF---CFVTFTEHTNAVTALHFMANNHSLLSAS-LDGTVRAWDLFRYRNFR  427 (860)
Q Consensus       354 ~~~~s~~~~~l~~~~~-dg~i~iwd~~~-~~---~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~  427 (860)
                      .++++|+++++++++. ++.|.+|++++ +.   .+..+. +...+..++++|+++++++++ .++.|.+||+.+...+.
T Consensus        84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~  162 (330)
T PRK11028         84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV  162 (330)
T ss_pred             EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence            8999999998888764 78999999964 32   222222 334567889999998886554 56899999997643221


Q ss_pred             -----EeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCC--Cc--eEEEecCc------ccCeEEEEEcCCCCEE
Q 038577          428 -----TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT--GR--LLDILSGH------EGPVHGLVFSPTNATL  492 (860)
Q Consensus       428 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~--~~--~~~~~~~h------~~~v~~l~~s~~~~~l  492 (860)
                           ....+.......++++|+|++++++....+.|.+|+++.  ++  .+..+..+      ......+.++|+++++
T Consensus       163 ~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l  242 (330)
T PRK11028        163 AQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL  242 (330)
T ss_pred             ccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence                 122223345678999999999999988555999999973  33  23333221      1123468899999999


Q ss_pred             EEEeC-CCcEEEEEccCCcceeEEcc---cCCCeEEEEEeeCCCEEEEEeC-CCeEEEEeCC
Q 038577          493 ASSSW-DKTVRLWNVFEGKGSVESFP---HTHDVLTVVYRPDGRQLACSTL-DGQIHFWDPL  549 (860)
Q Consensus       493 ~s~~~-dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~  549 (860)
                      +++.. ++.|.+|++...........   .......+.++|||++|+++.. +++|.+|+++
T Consensus       243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            88854 78999999965442222222   1234567899999999998875 8899999874

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.81  E-value=1.3e-17  Score=162.40  Aligned_cols=346  Identities=18%  Similarity=0.235  Sum_probs=233.8

Q ss_pred             ccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcE-EEEEEcc--CCCCCccceEEEEcCC
Q 038577          139 DCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSV-VGCFFSV--DKKTDKVNRIYTIARD  215 (860)
Q Consensus       139 ~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i-~~~~~~~--~~~~~~~~~l~s~~~d  215 (860)
                      .|...+.|+.|+.....+.+++.+..+.-|++.+. +.    ....+.  .+.+ +.+..-+  .+.......++.++.|
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~-s~----~~~~~p--~df~pt~~h~~~rs~~~g~~~d~~~i~s~D   84 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRD-SV----EVAKLP--DDFVPTDMHLGGRSSGGGKGSDTLLICSND   84 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccch-hh----hhhhCC--cccCCccccccccccCCCCCcceEEEEcCC
Confidence            46667789999987776666555444444455443 11    111111  1111 1111111  1111123378899999


Q ss_pred             ccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCC
Q 038577          216 CYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPD  295 (860)
Q Consensus       216 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~  295 (860)
                      |.+.+.+-....                             ......|.+.+.+-.|+|+|.-|++.+.||.|.+|.- +
T Consensus        85 Gkf~il~k~~rV-----------------------------E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-s  134 (737)
T KOG1524|consen   85 GRFVILNKSARV-----------------------------ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-S  134 (737)
T ss_pred             ceEEEecccchh-----------------------------hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-c
Confidence            999888765532                             2344568889999999999999999999999999997 4


Q ss_pred             ceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 038577          296 FVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKV  375 (860)
Q Consensus       296 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  375 (860)
                      |-...++.....+|.|++|.|+.+.++++.+  +.+.+=.+.....+.+.+.|.+-|.++.|++..+.+++|+.|-..++
T Consensus       135 GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKv  212 (737)
T KOG1524|consen  135 GMLRSTVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKI  212 (737)
T ss_pred             chHHHHHhhcCceeEEEEECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEe
Confidence            5444555566779999999999999998866  78888888888888889999999999999999999999999999999


Q ss_pred             EECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecC
Q 038577          376 WTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLD  455 (860)
Q Consensus       376 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  455 (860)
                      ||.. |..+..-..|..+|++++|.|+ ..++.++. .+++            +..+....+..++||+||..+++|+..
T Consensus       213 WD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~  277 (737)
T KOG1524|consen  213 WDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTAR------------FSSPRVGSIFNLSWSADGTQATCGTST  277 (737)
T ss_pred             eccc-CcccccCChhccceeeeeeccc-cceeeeee-eeee------------ecCCCccceEEEEEcCCCceeeccccC
Confidence            9964 7777777889999999999999 44555543 2343            555667789999999999999999988


Q ss_pred             CCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEE
Q 038577          456 SFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLA  535 (860)
Q Consensus       456 ~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  535 (860)
                      | .+.+-..-..+..                 -+.+=++......|.+-|+.++.+  .....+..+...+..  -.+|+
T Consensus       278 G-~v~~A~~ieq~l~-----------------~~n~~~t~~~r~~I~vrdV~~~v~--d~LE~p~rv~k~sL~--Y~hLv  335 (737)
T KOG1524|consen  278 G-QLIVAYAIEQQLV-----------------SGNLKATSKSRKSITVRDVATGVQ--DILEFPQRVVKFSLG--YGHLV  335 (737)
T ss_pred             c-eEEEeeeehhhhh-----------------hccceeEeeccceEEeehhhhhHH--HHhhCccceeeeeec--eeEEE
Confidence            7 3332211111100                 122223334455566777666542  344455555555543  23444


Q ss_pred             EEeCCCeEEEEeCCCCceeEEEeccc
Q 038577          536 CSTLDGQIHFWDPLNGELMYTIEGRR  561 (860)
Q Consensus       536 ~~~~dg~i~iwd~~~~~~~~~~~~~~  561 (860)
                      ++. ...+++|.-......-.+.+..
T Consensus       336 vaT-s~qvyiys~knwntpiiidgre  360 (737)
T KOG1524|consen  336 VAT-SLQVYIYSEKNWNTPIIIDGRE  360 (737)
T ss_pred             EEe-ccEEEEEecCCccCcEEEeccc
Confidence            443 3457777765555444555444

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=6.3e-18  Score=157.84  Aligned_cols=317  Identities=19%  Similarity=0.274  Sum_probs=225.3

Q ss_pred             EEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEee--cCCCcEEEEEEccCCCCCccceEEE
Q 038577          134 IRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLL--GHRDSVVGCFFSVDKKTDKVNRIYT  211 (860)
Q Consensus       134 ~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~--~h~~~i~~~~~~~~~~~~~~~~l~s  211 (860)
                      .+.+.+|.+.|.++.||.++++|++|+.|..+++|+++..... ....+..+.  .|...|.+++|.....     .+++
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~-k~~KPI~~~~~~H~SNIF~L~F~~~N~-----~~~S  122 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVR-KTPKPIGVMEHPHRSNIFSLEFDLENR-----FLYS  122 (609)
T ss_pred             hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhh-cCCCCceeccCccccceEEEEEccCCe-----eEec
Confidence            3556789999999999999999999999999999999865211 111233333  4668999999998888     9999


Q ss_pred             EcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEE
Q 038577          212 IARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLY  291 (860)
Q Consensus       212 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~  291 (860)
                      |+.+++|..-|+++.+..                          ....-....+.|..+..+|-.+.+++.+.+|.|.+|
T Consensus       123 G~~~~~VI~HDiEt~qsi--------------------------~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~  176 (609)
T KOG4227|consen  123 GERWGTVIKHDIETKQSI--------------------------YVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFI  176 (609)
T ss_pred             CCCcceeEeeecccceee--------------------------eeecccCcccceeecccCCCCceEEEEecCceEEEE
Confidence            999999999999985430                          011112234589999999999999999999999999


Q ss_pred             ECCCcee---EEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEE-Ee------cCcccCeEEEEEcCCC
Q 038577          292 QMPDFVC---IHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYIL-KQ------QGHYFDVNCLAYSPDS  361 (860)
Q Consensus       292 ~~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~-~~------~~~~~~v~~~~~s~~~  361 (860)
                      |......   +..+.........+.|+|....|+.+....+-+.+||.+...... ..      +.....-.++.|+|+|
T Consensus       177 D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G  256 (609)
T KOG4227|consen  177 DNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSG  256 (609)
T ss_pred             eccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCC
Confidence            9876542   222333445678899999998888877777999999987643211 11      1112223567899999


Q ss_pred             CEEEEEeCCCcEEEEECCCCeeEEEeecCC-------CceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCC
Q 038577          362 QLLATGADDNKVKVWTVSSGFCFVTFTEHT-------NAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSS  434 (860)
Q Consensus       362 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~  434 (860)
                      +.+.+--....-.+||+-+..+...-..|+       ..+.+++|..|. .+++|+.+-.|.+|.+.......-+     
T Consensus       257 ~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~-----  330 (609)
T KOG4227|consen  257 NQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGF-----  330 (609)
T ss_pred             CeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCc-----
Confidence            999887766666778887654433322333       346778887665 4899999999999988542211110     


Q ss_pred             CcEEEEEECCCCCEEEEEecCC---CeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 038577          435 RQFVSLASDQSGEVICAGTLDS---FEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVF  507 (860)
Q Consensus       435 ~~~~~~~~~~~~~~l~~~~~~~---~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~  507 (860)
                         +.           +|....   ..|.|     .+.+..++||..-+..+.|+|...+|++.+-.+.+++|.-.
T Consensus       331 ---~~-----------IG~~~~~~~~~~~i-----~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  331 ---TQ-----------IGHDEEEMPSEIFI-----EKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             ---cc-----------cCcchhhCchhhee-----cceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence               00           010000   01111     23466789999999999999999999999999999999753

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=1.4e-18  Score=170.76  Aligned_cols=259  Identities=21%  Similarity=0.282  Sum_probs=201.5

Q ss_pred             EEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccC--------ceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCc
Q 038577          301 LLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRS--------ESYILKQQGHYFDVNCLAYSPDSQLLATGADDNK  372 (860)
Q Consensus       301 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  372 (860)
                      ++..+.+.++.++|.+....+++++.+ |.+.+|+++.        -+.+.++++|.++|.|+++.+++..+++|+.||+
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed-~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASED-GTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT  367 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccc-cchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence            566777889999999999999888776 9999999932        2567888999999999999999999999999999


Q ss_pred             EEEEECCCC----------eeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCC-CcEEEEE
Q 038577          373 VKVWTVSSG----------FCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSS-RQFVSLA  441 (860)
Q Consensus       373 i~iwd~~~~----------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~~~~~~~  441 (860)
                      |+.|++...          .....+.+|.+.|+.+++++....|++++.||+++.|+...... .++..+.. ....++.
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd  446 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD  446 (577)
T ss_pred             eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence            999966421          23456789999999999999999999999999999999866555 33433322 2234455


Q ss_pred             ECCCCCEEEEEecCCCeEEEEECCCCceEEEecCc-------ccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeE
Q 038577          442 SDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGH-------EGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVE  514 (860)
Q Consensus       442 ~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h-------~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~  514 (860)
                      +......+.+++...+.-.++++..+..+..+...       ...+..+.++|.+.+.+++..|+.|+++|..++..+..
T Consensus       447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s  526 (577)
T KOG0642|consen  447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS  526 (577)
T ss_pred             eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence            44333222222222213444455544444444321       23467788999999999999999999999999998888


Q ss_pred             EcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEeccc
Q 038577          515 SFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRR  561 (860)
Q Consensus       515 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  561 (860)
                      ...|...++++++.|+|-+|++++.||.+++|.+....++.....|+
T Consensus       527 ~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  527 MVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             eeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence            88999999999999999999999999999999998887777666554

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.79  E-value=3.5e-17  Score=149.50  Aligned_cols=233  Identities=16%  Similarity=0.193  Sum_probs=185.0

Q ss_pred             cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEee
Q 038577           92 FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYV  170 (860)
Q Consensus        92 ~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~  170 (860)
                      ...+|+|.+|++|+..+|++ ....|.||...+..    .++..+++..|...|+++.|+|.++.|++++.|+.-.||..
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~----~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~   84 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD----LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCC----CceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence            46899999999999999999 66799999988765    35578999999999999999999999999999999999998


Q ss_pred             cccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceee
Q 038577          171 KEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVK  250 (860)
Q Consensus       171 ~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (860)
                      ..+.+.   .....+..++...+++.|+|.++     .+++++.-..|.+|-.+...                       
T Consensus        85 ~~~~~W---kptlvLlRiNrAAt~V~WsP~en-----kFAVgSgar~isVcy~E~EN-----------------------  133 (361)
T KOG1523|consen   85 PSGGTW---KPTLVLLRINRAATCVKWSPKEN-----KFAVGSGARLISVCYYEQEN-----------------------  133 (361)
T ss_pred             CCCCee---ccceeEEEeccceeeEeecCcCc-----eEEeccCccEEEEEEEeccc-----------------------
Confidence            544244   45677888999999999999999     99999999999999887642                       


Q ss_pred             eEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECC------------------CceeEEEEeecCceeEEE
Q 038577          251 KWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMP------------------DFVCIHLLSISREKITTA  312 (860)
Q Consensus       251 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~------------------~~~~~~~~~~~~~~i~~~  312 (860)
                      .|-+. +..-....+.|.++.|+|++-++++|+.|+..+++..-                  -++.+.++....+.+..+
T Consensus       134 dWWVs-KhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v  212 (361)
T KOG1523|consen  134 DWWVS-KHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGV  212 (361)
T ss_pred             ceehh-hhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeee
Confidence            34332 23334566789999999999999999999999999641                  233344444556789999


Q ss_pred             EEeeCCCEEEEEEccCCcEEEEEccCce-EEEEecCcccCeEEEEEcCCC
Q 038577          313 VFNELGNWLVFGCAKLGQLLVWEWRSES-YILKQQGHYFDVNCLAYSPDS  361 (860)
Q Consensus       313 ~~s~~~~~l~~~~~~~g~i~v~d~~~~~-~~~~~~~~~~~v~~~~~s~~~  361 (860)
                      .|+|+|..|+..+.+ +.+.+-|..... .+.......-+..++.|-.+.
T Consensus       213 ~fs~sG~~lawv~Hd-s~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~  261 (361)
T KOG1523|consen  213 LFSPSGNRLAWVGHD-STVSFVDAAGPSERVQSVATAQLPLLSVSWISEN  261 (361)
T ss_pred             EeCCCCCEeeEecCC-CceEEeecCCCchhccchhhccCCceeeEeecCC
Confidence            999999999999887 888888876654 233332223556666665443

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.79  E-value=2.2e-17  Score=148.25  Aligned_cols=261  Identities=17%  Similarity=0.174  Sum_probs=187.5

Q ss_pred             EEEe--CCCEEEeeeC--------CeEEEEECCCCcE---------Eeec-cCCccCeeEEEEcCCCCEEEEEcCCCcEE
Q 038577           18 AVLS--QNTKLISPVG--------NRVSVTDLIKSKT---------VTLP-VESSSNICRIAVSPDGTFLLTVDENQRCH   77 (860)
Q Consensus        18 ~~~s--dg~~l~~~~~--------~~i~v~d~~~~~~---------~~~~-~~h~~~v~~va~spdg~~la~~~~d~~i~   77 (860)
                      ++-+  |.+.|++...        ..+.||.+.....         +..+ ..+-+.|.|+.|.|++..||+-. ++.|.
T Consensus        69 las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~  147 (370)
T KOG1007|consen   69 LASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIV  147 (370)
T ss_pred             hhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceE
Confidence            4444  7777776532        2478998864332         1222 24567899999999999999877 78999


Q ss_pred             EEEcccCeE-EEEee------cCCceeEEEECC--CCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEE
Q 038577           78 FINLHCHVV-LHRVR------FKYPVNAILFSP--NGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALN  148 (860)
Q Consensus        78 vwd~~~~~~-~~~~~------~~~~v~~~~fsp--dg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~  148 (860)
                      +|++..+.. +..+.      +....++-+|||  ||..+++..+++++.||+.+..+      ....-..|...|..+.
T Consensus       148 l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~------~~sI~dAHgq~vrdlD  221 (370)
T KOG1007|consen  148 LWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKK------NNSIEDAHGQRVRDLD  221 (370)
T ss_pred             EEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhh------hcchhhhhcceeeecc
Confidence            999998765 44443      355678889999  89999999999999999998764      2334457888999999


Q ss_pred             EcCCCC-eEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCC
Q 038577          149 WSPDSN-YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGND  227 (860)
Q Consensus       149 ~s~d~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  227 (860)
                      |+|+.+ +|++++.||.|++||....  .   .....+.+|...|+++.|.|....    .+++++.|..|.+|....-.
T Consensus       222 fNpnkq~~lvt~gDdgyvriWD~R~t--k---~pv~el~~HsHWvW~VRfn~~hdq----LiLs~~SDs~V~Lsca~svS  292 (370)
T KOG1007|consen  222 FNPNKQHILVTCGDDGYVRIWDTRKT--K---FPVQELPGHSHWVWAVRFNPEHDQ----LILSGGSDSAVNLSCASSVS  292 (370)
T ss_pred             CCCCceEEEEEcCCCccEEEEeccCC--C---ccccccCCCceEEEEEEecCccce----EEEecCCCceeEEEeccccc
Confidence            999874 6889999999999999876  2   467899999999999999997654    89999999999999876543


Q ss_pred             CCCccccCCCCC-CCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCE-EEEEEcCCeEEEEECC
Q 038577          228 GKIDETMEDSEP-PSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDM-VVVGFSNGVFGLYQMP  294 (860)
Q Consensus       228 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~g~i~~~~~~  294 (860)
                      .........+.. .+......+.+...--....+..|...|.+++|+..... +|+-+.||.+.|=+++
T Consensus       293 SE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  293 SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             cccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence            222111111111 111111111111111123456778999999999987766 5577889998887664

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=2.5e-17  Score=173.25  Aligned_cols=290  Identities=16%  Similarity=0.261  Sum_probs=219.2

Q ss_pred             eeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCc---ccCeEEEEEcC--CCCEEEEEeCCCcEEEEECC-C-
Q 038577          308 KITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGH---YFDVNCLAYSP--DSQLLATGADDNKVKVWTVS-S-  380 (860)
Q Consensus       308 ~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~---~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~-~-  380 (860)
                      ....+.|+|-...++++... -.|.+||++.++....+..+   ...|+.+.+-.  |...+++|+.||.|+||+-- + 
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r-~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDR-ERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred             CCceeeecCCCceeEEcCCc-ceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence            45677888888888887655 79999999999988877543   45678887754  45689999999999999743 2 


Q ss_pred             ---CeeEEEeec-------CCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECC-CCCEE
Q 038577          381 ---GFCFVTFTE-------HTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQ-SGEVI  449 (860)
Q Consensus       381 ---~~~~~~~~~-------~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l  449 (860)
                         .+.+....+       ..+.=.-+.|.....+|+++|.-..|++||..+......++......++++..+. .|+.+
T Consensus      1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i 1224 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNII 1224 (1387)
T ss_pred             cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceE
Confidence               122222211       1111134567666667888887889999999999999988888877788877654 46999


Q ss_pred             EEEecCCCeEEEEECCCC---ceEEEecCcccC--eEEEEEcCCCC-EEEEEeCCCcEEEEEccCCcce--eEEccc---
Q 038577          450 CAGTLDSFEIFVWSMKTG---RLLDILSGHEGP--VHGLVFSPTNA-TLASSSWDKTVRLWNVFEGKGS--VESFPH---  518 (860)
Q Consensus       450 ~~~~~~~~~i~v~d~~~~---~~~~~~~~h~~~--v~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~--~~~~~~---  518 (860)
                      ++|..|| .+++||.+..   ..+...+.|...  |..+.+.+.|- .|++|+.||.|++||++.....  .....|   
T Consensus      1225 ~AGfaDG-svRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~y 1303 (1387)
T KOG1517|consen 1225 AAGFADG-SVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEY 1303 (1387)
T ss_pred             EEeecCC-ceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecccc
Confidence            9999999 9999998854   356777888877  99999998764 4999999999999999874211  111222   


Q ss_pred             CCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEE
Q 038577          519 THDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILA  598 (860)
Q Consensus       519 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~  598 (860)
                      .+..+++..+++...+|+|+. +.|+||++ .|+.+..++.+....+.             .-..+.+++|.|---.|++
T Consensus      1304 Gs~lTal~VH~hapiiAsGs~-q~ikIy~~-~G~~l~~~k~n~~F~~q-------------~~gs~scL~FHP~~~llAa 1368 (1387)
T KOG1517|consen 1304 GSALTALTVHEHAPIIASGSA-QLIKIYSL-SGEQLNIIKYNPGFMGQ-------------RIGSVSCLAFHPHRLLLAA 1368 (1387)
T ss_pred             CccceeeeeccCCCeeeecCc-ceEEEEec-ChhhhcccccCcccccC-------------cCCCcceeeecchhHhhhh
Confidence            335999999999999999998 89999998 56666666644322111             1234799999999999999


Q ss_pred             ecCCCeEEEEECCCce
Q 038577          599 GGSSKYICMYDVADQV  614 (860)
Q Consensus       599 ~~~dg~v~vwd~~~~~  614 (860)
                      |..|.+|.||..+.+.
T Consensus      1369 G~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1369 GSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             ccCCceEEEeecCCcC
Confidence            9999999999887653

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.78  E-value=1e-15  Score=156.06  Aligned_cols=317  Identities=13%  Similarity=0.076  Sum_probs=204.8

Q ss_pred             eCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEE
Q 038577           30 VGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIA  109 (860)
Q Consensus        30 ~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la  109 (860)
                      .++.|.+.|..+.+...........-..++|+|||+++.+++.||.|.++|+.+++.+.+++......++++||||++++
T Consensus        14 ~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~   93 (369)
T PF02239_consen   14 GSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVY   93 (369)
T ss_dssp             GGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEE
T ss_pred             CCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEE
Confidence            46899999999999877764333333557899999999999999999999999999999999888899999999999999


Q ss_pred             EE--eCCeEEEEeCCCCCcccceeEEEEEeec-------cCCCeEEEEEcCCCCeEEEeecC-CeEEEEeecccccCccc
Q 038577          110 VG--TGKLVQIWRSPGFKKEVFAFELIRTLAD-------CNDKVTALNWSPDSNYLLVGSKD-LAVRLFYVKEKLKGIHT  179 (860)
Q Consensus       110 ~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~s~d~~~l~s~~~d-g~v~vwd~~~~~~~~~~  179 (860)
                      ++  ..+.+.++|..+.+.       ++.+..       ...++.++..+|....++..-.| +.|.+-|.... .    
T Consensus        94 v~n~~~~~v~v~D~~tle~-------v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~-~----  161 (369)
T PF02239_consen   94 VANYEPGTVSVIDAETLEP-------VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP-K----  161 (369)
T ss_dssp             EEEEETTEEEEEETTT--E-------EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS-S----
T ss_pred             EEecCCCceeEeccccccc-------eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc-c----
Confidence            88  789999999998773       444432       23567888889988866655554 77777676554 1    


Q ss_pred             ccceEeecCCCcEEEEEEccCCCCCccceEEE-EcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeec
Q 038577          180 NKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYT-IARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKD  258 (860)
Q Consensus       180 ~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s-~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (860)
                      .................|+|+++     +++. ...+..+-++|..++..                      ...+..  
T Consensus       162 ~~~~~~i~~g~~~~D~~~dpdgr-----y~~va~~~sn~i~viD~~~~k~----------------------v~~i~~--  212 (369)
T PF02239_consen  162 NLKVTTIKVGRFPHDGGFDPDGR-----YFLVAANGSNKIAVIDTKTGKL----------------------VALIDT--  212 (369)
T ss_dssp             CEEEEEEE--TTEEEEEE-TTSS-----EEEEEEGGGTEEEEEETTTTEE----------------------EEEEE---
T ss_pred             ccceeeecccccccccccCcccc-----eeeecccccceeEEEeeccceE----------------------EEEeec--
Confidence            12223334456677889999998     7655 45667888998776422                      111100  


Q ss_pred             cccCCCCceEEE---------EecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEE---Ec
Q 038577          259 DFSQAPSKVTAC---------DYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFG---CA  326 (860)
Q Consensus       259 ~~~~~~~~v~~~---------~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~---~~  326 (860)
                      .-..+..+...+         .....+...+..-..+.+.+|+..+.+.++.+...... ..+..+|+++++.+.   +.
T Consensus       213 g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~  291 (369)
T PF02239_consen  213 GKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNP  291 (369)
T ss_dssp             SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-S
T ss_pred             cccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCC
Confidence            001111111111         11112233333333345567888889999999987766 888889999999998   55


Q ss_pred             cCCcEEEEEccCceEEEEecCc-ccCeEEEEEcCCCCEEEEEeCC--CcEEEEECCCCeeEEEee
Q 038577          327 KLGQLLVWEWRSESYILKQQGH-YFDVNCLAYSPDSQLLATGADD--NKVKVWTVSSGFCFVTFT  388 (860)
Q Consensus       327 ~~g~i~v~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~  388 (860)
                      +.+.|.++|.++.+....+... ...+..+.|+++|+.+.....+  +.|.+||..+.+.+..+.
T Consensus       292 ~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  292 DADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             SHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             CCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence            5689999999999877776432 2358899999999977665543  369999999999988876

...

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.78  E-value=2.9e-17  Score=147.46  Aligned_cols=269  Identities=16%  Similarity=0.197  Sum_probs=198.2

Q ss_pred             CCeEEEEECC--CCcE-EeeccCCccCeeEEEEcCCC-CEEEEEcCC-------CcEEEEEcccC---------eEEEEe
Q 038577           31 GNRVSVTDLI--KSKT-VTLPVESSSNICRIAVSPDG-TFLLTVDEN-------QRCHFINLHCH---------VVLHRV   90 (860)
Q Consensus        31 ~~~i~v~d~~--~~~~-~~~~~~h~~~v~~va~spdg-~~la~~~~d-------~~i~vwd~~~~---------~~~~~~   90 (860)
                      ++.|.+.++.  .++. ...+..|.++|..++-+|-. +.|+++..+       ..+.||.+...         +++..+
T Consensus        39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L  118 (370)
T KOG1007|consen   39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL  118 (370)
T ss_pred             cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence            3666666554  4444 34455678999999999955 556665332       24679987643         333444


Q ss_pred             e--cCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcC--CCCeEEEeecCCeEE
Q 038577           91 R--FKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSP--DSNYLLVGSKDLAVR  166 (860)
Q Consensus        91 ~--~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--d~~~l~s~~~dg~v~  166 (860)
                      .  +-+.|.|+.|.|++..+|+-.++.|.+|++..+....... +...-.+|....++-+|||  ||+.+++. .|+++.
T Consensus       119 dteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev-~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~  196 (370)
T KOG1007|consen  119 DTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEV-LSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQ  196 (370)
T ss_pred             CHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheee-cccccccccceecccccCCCCccceEEEe-CCCcEE
Confidence            3  4568999999999999999999999999998776421111 1111223566788889999  77777766 478999


Q ss_pred             EEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCc
Q 038577          167 LFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPE  246 (860)
Q Consensus       167 vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~  246 (860)
                      .||+.+. .    .....-..|...|..+.|.|+.+.    +|+++++||.|++||......                  
T Consensus       197 ~~D~RT~-~----~~~sI~dAHgq~vrdlDfNpnkq~----~lvt~gDdgyvriWD~R~tk~------------------  249 (370)
T KOG1007|consen  197 FWDLRTM-K----KNNSIEDAHGQRVRDLDFNPNKQH----ILVTCGDDGYVRIWDTRKTKF------------------  249 (370)
T ss_pred             EEEccch-h----hhcchhhhhcceeeeccCCCCceE----EEEEcCCCccEEEEeccCCCc------------------
Confidence            9999987 1    123445678899999999999875    899999999999999986432                  


Q ss_pred             ceeeeEEeeeeccccCCCCceEEEEecCCC-CEEEEEEcCCeEEEEECCC-----------------------------c
Q 038577          247 RRVKKWGLLRKDDFSQAPSKVTACDYHRGL-DMVVVGFSNGVFGLYQMPD-----------------------------F  296 (860)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~g~i~~~~~~~-----------------------------~  296 (860)
                               ....+.+|...|.++.|+|.- +++++|+.|..|.+|...+                             .
T Consensus       250 ---------pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~d  320 (370)
T KOG1007|consen  250 ---------PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQD  320 (370)
T ss_pred             ---------cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccc
Confidence                     245567888999999999975 4566899999999986531                             1


Q ss_pred             eeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc
Q 038577          297 VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR  337 (860)
Q Consensus       297 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~  337 (860)
                      ..+.++..|.+.|.+++|+.-..+++++-+.||.+.|-.+.
T Consensus       321 g~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  321 GQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             cccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence            12345667888999999999999999998888988876553

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=4.4e-18  Score=167.30  Aligned_cols=274  Identities=16%  Similarity=0.213  Sum_probs=205.6

Q ss_pred             eEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccc--cCcccccceEeecCCCcEEEEEEccCCCCCccce
Q 038577          131 FELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKL--KGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNR  208 (860)
Q Consensus       131 ~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~  208 (860)
                      |.+..++..|.+.|+.++|.|-...|++++.||.+.+|+++...  .........++.+|.++|.++++.++++     .
T Consensus       284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~-----~  358 (577)
T KOG0642|consen  284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE-----H  358 (577)
T ss_pred             cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce-----E
Confidence            34455788899999999999999999999999999999993321  2222356789999999999999999999     9


Q ss_pred             EEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEE-eeeeccccCCCCceEEEEecCCCCEEEEEEcCCe
Q 038577          209 IYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWG-LLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGV  287 (860)
Q Consensus       209 l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~  287 (860)
                      +++++.||+|+.|++......        .   +        ... ......+.+|.+.++.+++++....|++++.||+
T Consensus       359 ~ysgg~Dg~I~~w~~p~n~dp--------~---d--------s~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgT  419 (577)
T KOG0642|consen  359 CYSGGIDGTIRCWNLPPNQDP--------D---D--------SYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGT  419 (577)
T ss_pred             EEeeccCceeeeeccCCCCCc--------c---c--------ccCcchhccceeccccceeeeeecccccceeeecCCce
Confidence            999999999999988632210        0   0        000 0124567789999999999999999999999999


Q ss_pred             EEEEECCCceeEEEEeecC--ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecC-------cccCeEEEEEc
Q 038577          288 FGLYQMPDFVCIHLLSISR--EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQG-------HYFDVNCLAYS  358 (860)
Q Consensus       288 i~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~-------~~~~v~~~~~s  358 (860)
                      ++.|+...... .++....  +-..++.+......+.+++...+.-.+++.+.......+..       ....+..+.++
T Consensus       420 vr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~  498 (577)
T KOG0642|consen  420 VRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSH  498 (577)
T ss_pred             EEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEec
Confidence            99999865554 3333222  23344444443333333333224444444444444433321       12346778899


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEe
Q 038577          359 PDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTF  429 (860)
Q Consensus       359 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~  429 (860)
                      |.+.+.+++..|+.|+++|..++..+.....|...++++++.|+|.+|++++.|+.+++|.+....+....
T Consensus       499 ~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es  569 (577)
T KOG0642|consen  499 PTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES  569 (577)
T ss_pred             CCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence            99999999999999999999999999999999999999999999999999999999999998665554433

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.78  E-value=1.1e-16  Score=143.92  Aligned_cols=279  Identities=15%  Similarity=0.245  Sum_probs=202.3

Q ss_pred             CCceEEEEecC---CCCEEEEEEcC----CeEEEEECC--CceeEEEE-eecCceeEEEEEeeCCC----EEEEEEccCC
Q 038577          264 PSKVTACDYHR---GLDMVVVGFSN----GVFGLYQMP--DFVCIHLL-SISREKITTAVFNELGN----WLVFGCAKLG  329 (860)
Q Consensus       264 ~~~v~~~~~~~---~~~~l~~~~~~----g~i~~~~~~--~~~~~~~~-~~~~~~i~~~~~s~~~~----~l~~~~~~~g  329 (860)
                      .-.+.++.|+.   ...++++|+..    +.|.+..+.  +++.+..- -.+..+++.+.|.|+..    .++++++  .
T Consensus        44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D  121 (364)
T KOG0290|consen   44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--D  121 (364)
T ss_pred             CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--C
Confidence            34577777773   23467877753    666666554  33333222 23556899999999873    2333333  5


Q ss_pred             cEEEEEccCceEEEE---------ecCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCe---eEEEeecCCCceEE
Q 038577          330 QLLVWEWRSESYILK---------QQGHYFDVNCLAYSP-DSQLLATGADDNKVKVWTVSSGF---CFVTFTEHTNAVTA  396 (860)
Q Consensus       330 ~i~v~d~~~~~~~~~---------~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~  396 (860)
                      .+++|.+........         -..+..+++++.|+. +-+++.+.+-|.+..|||++++.   ....+..|...|..
T Consensus       122 ~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~D  201 (364)
T KOG0290|consen  122 FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYD  201 (364)
T ss_pred             eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeE
Confidence            899999874221111         123567899999987 56688889999999999999863   35677889999999


Q ss_pred             EEEeeCC-CEEEEEeCCCcEEEEEccccceeeEeeC-CC-CCcEEEEEECCC-CCEEEEEecCCCeEEEEECCC-CceEE
Q 038577          397 LHFMANN-HSLLSASLDGTVRAWDLFRYRNFRTFTT-PS-SRQFVSLASDQS-GEVICAGTLDSFEIFVWSMKT-GRLLD  471 (860)
Q Consensus       397 i~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~-~~~~~~~~~~~~-~~~l~~~~~~~~~i~v~d~~~-~~~~~  471 (860)
                      ++|..++ +.+++.|.||.+|+||++.......+.. +. ..+...+++++. -+++|+-..|+..|.+.|++. ..++.
T Consensus       202 Iaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva  281 (364)
T KOG0290|consen  202 IAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVA  281 (364)
T ss_pred             EEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCccee
Confidence            9999866 6789999999999999998766554433 33 446677777764 467787777777999999985 56789


Q ss_pred             EecCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEEccCCcc-----eeEEcccCCCeEEEEEee-CCCEEEEEeCCCeEE
Q 038577          472 ILSGHEGPVHGLVFSPT-NATLASSSWDKTVRLWNVFEGKG-----SVESFPHTHDVLTVVYRP-DGRQLACSTLDGQIH  544 (860)
Q Consensus       472 ~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~  544 (860)
                      .+++|.+.|++++|.|. ...|++++.|..+.+||+.....     ........++|..+.|++ .+.+++.+.. ..+.
T Consensus       282 ~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~-kkle  360 (364)
T KOG0290|consen  282 RLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG-KKLE  360 (364)
T ss_pred             hhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec-Ceee
Confidence            99999999999999996 56799999999999999976432     111224678899999996 5667887764 3344


Q ss_pred             E
Q 038577          545 F  545 (860)
Q Consensus       545 i  545 (860)
                      +
T Consensus       361 i  361 (364)
T KOG0290|consen  361 I  361 (364)
T ss_pred             E
Confidence            3

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=5.1e-16  Score=158.19  Aligned_cols=417  Identities=15%  Similarity=0.139  Sum_probs=280.5

Q ss_pred             cCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCC------------CCeEEEe
Q 038577           92 FKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPD------------SNYLLVG  159 (860)
Q Consensus        92 ~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d------------~~~l~s~  159 (860)
                      +...-.++.|+|.| +||.|....|.+-|..+.+       .+..+..|...|+.+.|.|-            .-+||++
T Consensus        14 ~~sN~~A~Dw~~~G-LiAygshslV~VVDs~s~q-------~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsa   85 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSG-LIAYGSHSLVSVVDSRSLQ-------LIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASA   85 (1062)
T ss_pred             CcccccccccCccc-eEEEecCceEEEEehhhhh-------hhhccccCccceeEEEeccCCCchhccCccccceeEEec
Confidence            34446788999876 8999999999999988776       57889999999999999872            1356777


Q ss_pred             ecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCC
Q 038577          160 SKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEP  239 (860)
Q Consensus       160 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~  239 (860)
                      ...|.|.+||....      .....+..|.+++..++|-+.... ....|+......++.+|+..+++.           
T Consensus        86 D~~GrIil~d~~~~------s~~~~l~~~~~~~qdl~W~~~rd~-Srd~LlaIh~ss~lvLwntdtG~k-----------  147 (1062)
T KOG1912|consen   86 DISGRIILVDFVLA------SVINWLSHSNDSVQDLCWVPARDD-SRDVLLAIHGSSTLVLWNTDTGEK-----------  147 (1062)
T ss_pred             cccCcEEEEEehhh------hhhhhhcCCCcchhheeeeeccCc-chheeEEecCCcEEEEEEccCCce-----------
Confidence            78899999999988      667788899999999999775431 112788888889999999998754           


Q ss_pred             CCCCCCcceeeeEEeeeeccccCCCCceEEEEecC-CCCEEEEEEcCCeEEEEECCC-------ceeEEEEeecCc----
Q 038577          240 PSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHR-GLDMVVVGFSNGVFGLYQMPD-------FVCIHLLSISRE----  307 (860)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~g~i~~~~~~~-------~~~~~~~~~~~~----  307 (860)
                                 .|+...      ......|+.+.| |.+.+.+-+..|.+.+.+.-.       ++..+.-..+.+    
T Consensus       148 -----------~Wk~~y------s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~l  210 (1062)
T KOG1912|consen  148 -----------FWKYDY------SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHL  210 (1062)
T ss_pred             -----------eecccc------CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhh
Confidence                       664432      233566788888 445666777777777665421       222222111111    


Q ss_pred             ---------------------eeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCC--CEE
Q 038577          308 ---------------------KITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDS--QLL  364 (860)
Q Consensus       308 ---------------------~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l  364 (860)
                                           -....+|+|.-+.+++.... ..+.++|++-...+....-..+.+.-+.+-|++  ..|
T Consensus       211 ere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p-rellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~L  289 (1062)
T KOG1912|consen  211 ERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP-RELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDAL  289 (1062)
T ss_pred             hhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec-cceEEEcchhhceeEEEEeccCCcceeEeccCCCcceE
Confidence                                 01235677877777776666 889999999888887776666666677777765  478


Q ss_pred             EEEeCCCcEEEEECCCC----------------eeEEEeec-CCCceEEEEEeeC-CCEEEEEeCCCcEEEEEcccccee
Q 038577          365 ATGADDNKVKVWTVSSG----------------FCFVTFTE-HTNAVTALHFMAN-NHSLLSASLDGTVRAWDLFRYRNF  426 (860)
Q Consensus       365 ~~~~~dg~i~iwd~~~~----------------~~~~~~~~-~~~~v~~i~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~  426 (860)
                      ++...||.+.+|--...                .....+.. .+-.+.....+|. ...++.--.+|.+.+|.+.+++..
T Consensus       290 fclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~  369 (1062)
T KOG1912|consen  290 FCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIH  369 (1062)
T ss_pred             EEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcC
Confidence            88999999999975431                11111110 1111222223343 223333345677778877654321


Q ss_pred             eEeeC------------------------------CCCCcEE-----------EEEECCCCC-------EEEEEecCCCe
Q 038577          427 RTFTT------------------------------PSSRQFV-----------SLASDQSGE-------VICAGTLDSFE  458 (860)
Q Consensus       427 ~~~~~------------------------------~~~~~~~-----------~~~~~~~~~-------~l~~~~~~~~~  458 (860)
                      .....                              .+.....           -..-.|.|+       ++|+|+..| +
T Consensus       370 ~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sG-T  448 (1062)
T KOG1912|consen  370 LDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSG-T  448 (1062)
T ss_pred             cccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCc-e
Confidence            11100                              0011111           111223232       466777777 9


Q ss_pred             EEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEE---------eCCCcEEEEEccCCcceeEE---cccCCCeEEEE
Q 038577          459 IFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASS---------SWDKTVRLWNVFEGKGSVES---FPHTHDVLTVV  526 (860)
Q Consensus       459 i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~---------~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~  526 (860)
                      |.++|+.++..-+.+..|.+.|.++.|-.+.+++-.+         +.-+.+.+-|+++|......   .....+|+.+.
T Consensus       449 V~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~ir  528 (1062)
T KOG1912|consen  449 VDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIR  528 (1062)
T ss_pred             EEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeee
Confidence            9999999999999999999999999997665543322         22345778899988633221   24678899999


Q ss_pred             EeeCCCEEEEEeCCCeEEEEeCCCCce
Q 038577          527 YRPDGRQLACSTLDGQIHFWDPLNGEL  553 (860)
Q Consensus       527 ~s~~~~~l~~~~~dg~i~iwd~~~~~~  553 (860)
                      .|..|+||+..-.+.-+.+||+++..+
T Consensus       529 vS~~~~yLai~Fr~~plEiwd~kt~~~  555 (1062)
T KOG1912|consen  529 VSSSGRYLAILFRREPLEIWDLKTLRM  555 (1062)
T ss_pred             ecccCceEEEEecccchHHHhhccchH
Confidence            999999999999999999999977543

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.77  E-value=1e-18  Score=178.87  Aligned_cols=285  Identities=15%  Similarity=0.173  Sum_probs=226.2

Q ss_pred             eeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee-cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCC
Q 038577           46 TLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPG  123 (860)
Q Consensus        46 ~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~  123 (860)
                      ..+.||...|.|++|...|.++++++.|.-++||..+++.++...+ |.+.|+.++.+.+..++|++ .|..|++|.+..
T Consensus       184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~  263 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD  263 (1113)
T ss_pred             HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence            3456999999999999999999999999999999999999999988 99999999999999999998 788999999999


Q ss_pred             CCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeec-CCCcEEEEEEccCCC
Q 038577          124 FKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLG-HRDSVVGCFFSVDKK  202 (860)
Q Consensus       124 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~-h~~~i~~~~~~~~~~  202 (860)
                      +.       ++..+.+|++.|++++|+|-.    +.+.||++++||..-....   ..+..+.. ...-+.++.|..++.
T Consensus       264 ~~-------pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~---y~prp~~~~~~~~~~s~~~~~~~~  329 (1113)
T KOG0644|consen  264 GA-------PVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRI---YVPRPLKFTEKDLVDSILFENNGD  329 (1113)
T ss_pred             Cc-------hHHHHhccccceeeeccCccc----cCCCCCceEeccccccccc---cCCCCCCcccccceeeeecccccc
Confidence            88       478899999999999999953    7789999999999832111   11111211 234566777877887


Q ss_pred             CCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCC-CEEEE
Q 038577          203 TDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGL-DMVVV  281 (860)
Q Consensus       203 ~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~  281 (860)
                           .+.+++.|+.-..|...--..                        .          ...+.-+..+.+. .+.++
T Consensus       330 -----~f~Tgs~d~ea~n~e~~~l~~------------------------~----------~~~lif~t~ssd~~~~~~~  370 (1113)
T KOG0644|consen  330 -----RFLTGSRDGEARNHEFEQLAW------------------------R----------SNLLIFVTRSSDLSSIVVT  370 (1113)
T ss_pred             -----ccccccCCcccccchhhHhhh------------------------h----------ccceEEEecccccccccee
Confidence                 899999999888886653211                        1          1111111122122 34455


Q ss_pred             EEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCC
Q 038577          282 GFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDS  361 (860)
Q Consensus       282 ~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~  361 (860)
                      .-.+-.+.+|++.++...+.+.++.+.+..+.++|-...++.....||...|||+-.+..+.........+..-+||++|
T Consensus       371 ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdg  450 (1113)
T KOG0644|consen  371 ARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDG  450 (1113)
T ss_pred             eeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCC
Confidence            66667889999999999999999999999999999999998888888999999999887776664335567778999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCee
Q 038577          362 QLLATGADDNKVKVWTVSSGFC  383 (860)
Q Consensus       362 ~~l~~~~~dg~i~iwd~~~~~~  383 (860)
                      ..++....-|.++|.....++.
T Consensus       451 ts~~lsd~hgql~i~g~gqs~s  472 (1113)
T KOG0644|consen  451 TSIALSDDHGQLYILGTGQSKS  472 (1113)
T ss_pred             ceEecCCCCCceEEeccCCCcc
Confidence            9999988889999987655443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=4.4e-17  Score=172.89  Aligned_cols=233  Identities=19%  Similarity=0.194  Sum_probs=167.7

Q ss_pred             CeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCC---CcEEEEEcccCeEEEEeecCCceeEEEECCCCCEE
Q 038577           32 NRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDEN---QRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYI  108 (860)
Q Consensus        32 ~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d---~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~l  108 (860)
                      ..|.+||........ +..|...+.+++|||||+.||+++.+   ..|++||+.+++........+...+++|+|||+.|
T Consensus       184 ~~i~i~d~dg~~~~~-lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~L  262 (429)
T PRK01742        184 YEVRVADYDGFNQFI-VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRL  262 (429)
T ss_pred             EEEEEECCCCCCceE-eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEE
Confidence            479999987766544 44788889999999999999987653   47999999988654433344556689999999999


Q ss_pred             EEE--eCCe--EEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEee-cCCeEEEEeecccccCcccccce
Q 038577          109 AVG--TGKL--VQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGS-KDLAVRLFYVKEKLKGIHTNKPF  183 (860)
Q Consensus       109 a~~--~~~~--i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~  183 (860)
                      +++  .++.  |++||+.++.        ...+..+...+....|+|||+.|+.++ .++...||+++.. ..    ...
T Consensus       263 a~~~~~~g~~~Iy~~d~~~~~--------~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~-~~----~~~  329 (429)
T PRK01742        263 AFASSKDGVLNIYVMGANGGT--------PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS-GG----GAS  329 (429)
T ss_pred             EEEEecCCcEEEEEEECCCCC--------eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC-CC----CeE
Confidence            887  3565  4455666654        355667777889999999999877665 5788999988754 11    112


Q ss_pred             EeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCC
Q 038577          184 LLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQA  263 (860)
Q Consensus       184 ~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (860)
                      .+ .+..  ....|+||++     .|+..+.++ +..||+.++..                        .....    . 
T Consensus       330 ~l-~~~~--~~~~~SpDG~-----~ia~~~~~~-i~~~Dl~~g~~------------------------~~lt~----~-  371 (429)
T PRK01742        330 LV-GGRG--YSAQISADGK-----TLVMINGDN-VVKQDLTSGST------------------------EVLSS----T-  371 (429)
T ss_pred             Ee-cCCC--CCccCCCCCC-----EEEEEcCCC-EEEEECCCCCe------------------------EEecC----C-
Confidence            22 3443  4578999999     888887765 55588876532                        11100    0 


Q ss_pred             CCceEEEEecCCCCEEEEEEcCCeEEEEEC--CCceeEEEEeecCceeEEEEEeeC
Q 038577          264 PSKVTACDYHRGLDMVVVGFSNGVFGLYQM--PDFVCIHLLSISREKITTAVFNEL  317 (860)
Q Consensus       264 ~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~--~~~~~~~~~~~~~~~i~~~~~s~~  317 (860)
                       .....+.|+|+|++++.++.+|...+|.+  .++...+.+..+.+.+...+|+|-
T Consensus       372 -~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        372 -FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             -CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence             11245779999999999999988887765  367778888777777888888874

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=2.5e-17  Score=151.79  Aligned_cols=283  Identities=15%  Similarity=0.143  Sum_probs=198.3

Q ss_pred             EEEee-eCCeEEEEECCCCcEEeeccCCccCeeEEEEcC--CCCEEEEEcCCCcEEEEEcccCeEEEEee---c-CCcee
Q 038577           25 KLISP-VGNRVSVTDLIKSKTVTLPVESSSNICRIAVSP--DGTFLLTVDENQRCHFINLHCHVVLHRVR---F-KYPVN   97 (860)
Q Consensus        25 ~l~~~-~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~sp--dg~~la~~~~d~~i~vwd~~~~~~~~~~~---~-~~~v~   97 (860)
                      .+|++ +.|.|++||..+++.+..+.++...+..++|..  ....+.+++.||+|++||+.+......+.   + ..+-.
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~  121 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI  121 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence            45554 568999999999999888889999999999986  45678899999999999999877766665   2 24677


Q ss_pred             EEEECCCCCEEEEE-----eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCC-CeEEEeecCCeEEEEeec
Q 038577           98 AILFSPNGKYIAVG-----TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDS-NYLLVGSKDLAVRLFYVK  171 (860)
Q Consensus        98 ~~~fspdg~~la~~-----~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~-~~l~s~~~dg~v~vwd~~  171 (860)
                      +++....+..+++|     .+-.+.+||+...++.     +..-...|.+.|++++|.|.. +.|++|+.||-|.++|+.
T Consensus       122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~-----l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~  196 (376)
T KOG1188|consen  122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL-----LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK  196 (376)
T ss_pred             EeeccCcCCeEEeccccccCceEEEEEEeccccch-----hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence            78877788999998     5679999999987642     223456899999999999965 799999999999999998


Q ss_pred             ccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeee
Q 038577          172 EKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKK  251 (860)
Q Consensus       172 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (860)
                      ...+.   ......-.|...|..+.|..++..    +|.+.+..++..+|+++.+.+......+.....      ...+.
T Consensus       197 ~d~Ee---DaL~~viN~~sSI~~igw~~~~yk----rI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~------d~r~~  263 (376)
T KOG1188|consen  197 KDNEE---DALLHVINHGSSIHLIGWLSKKYK----RIMCLTHMETFAIYELEDGSEETWLENPDVSAD------DLRKE  263 (376)
T ss_pred             CCcch---hhHHHhhcccceeeeeeeecCCcc----eEEEEEccCceeEEEccCCChhhcccCccchhh------hHHhh
Confidence            76322   334455568888999999888743    799999999999999998764222211110000      00001


Q ss_pred             EEeeeeccccCCCCceEEEEecCCCCEEEEEEc-CCeEEEEECC---C---ceeEEEEee-cCceeEEEEEeeCCCEEEE
Q 038577          252 WGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFS-NGVFGLYQMP---D---FVCIHLLSI-SREKITTAVFNELGNWLVF  323 (860)
Q Consensus       252 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~g~i~~~~~~---~---~~~~~~~~~-~~~~i~~~~~s~~~~~l~~  323 (860)
                      |          ....+.......+....++++. .|...++-+.   +   .+.+..+.+ +..-|+++.|...+..+.+
T Consensus       264 ~----------~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~T  333 (376)
T KOG1188|consen  264 D----------NCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYT  333 (376)
T ss_pred             h----------hhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeec
Confidence            1          1111222222234445554444 4544444332   2   233444555 4556788888877777777


Q ss_pred             EEccCCcEEEEEc
Q 038577          324 GCAKLGQLLVWEW  336 (860)
Q Consensus       324 ~~~~~g~i~v~d~  336 (860)
                      ++.+ |.+.+|..
T Consensus       334 GGED-G~l~~Wk~  345 (376)
T KOG1188|consen  334 GGED-GLLQAWKV  345 (376)
T ss_pred             cCCC-ceEEEEec
Confidence            7655 99999985

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1.1e-16  Score=149.62  Aligned_cols=296  Identities=12%  Similarity=0.096  Sum_probs=214.4

Q ss_pred             eeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEccc------CeEEEEee--cCCceeEEEECCCCCEEEEE-eCCeE
Q 038577           46 TLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHC------HVVLHRVR--FKYPVNAILFSPNGKYIAVG-TGKLV  116 (860)
Q Consensus        46 ~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~------~~~~~~~~--~~~~v~~~~fspdg~~la~~-~~~~i  116 (860)
                      +-+.+|.+.|.++.||.++++||+|+.|..+.+|+++.      .+++....  |...|.|++|.-..+++.+| .+++|
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            34458999999999999999999999999999999863      34444444  67899999999999999998 88999


Q ss_pred             EEEeCCCCCcccceeEEEEEe--eccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEE
Q 038577          117 QIWRSPGFKKEVFAFELIRTL--ADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVG  194 (860)
Q Consensus       117 ~iwd~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~  194 (860)
                      ...|+++.+.       +..+  ....+.|..+..+|-.+.|++.+.++.|.+||.......   ..+..+.........
T Consensus       130 I~HDiEt~qs-------i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~---~~~~~~AN~~~~F~t  199 (609)
T KOG4227|consen  130 IKHDIETKQS-------IYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNP---ISLVLPANSGKNFYT  199 (609)
T ss_pred             Eeeeccccee-------eeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCC---CceeeecCCCcccee
Confidence            9999998763       2222  223458999999999999999999999999999876222   234445555667788


Q ss_pred             EEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecC
Q 038577          195 CFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHR  274 (860)
Q Consensus       195 ~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  274 (860)
                      +.|.|....    +|++.+..+-+-+||........                     +....-..++.....-....|+|
T Consensus       200 ~~F~P~~P~----Li~~~~~~~G~~~~D~R~~~~~~---------------------~~~~~~~~L~~~~~~~M~~~~~~  254 (609)
T KOG4227|consen  200 AEFHPETPA----LILVNSETGGPNVFDRRMQARPV---------------------YQRSMFKGLPQENTEWMGSLWSP  254 (609)
T ss_pred             eeecCCCce----eEEeccccCCCCceeeccccchH---------------------HhhhccccCcccchhhhheeeCC
Confidence            899997763    77888888999999987643210                     00000111112222335678999


Q ss_pred             CCCEEEEEEcCCeEEEEECCCceeEEEEeec-------CceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc--------
Q 038577          275 GLDMVVVGFSNGVFGLYQMPDFVCIHLLSIS-------REKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE--------  339 (860)
Q Consensus       275 ~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~--------  339 (860)
                      .|+.+.+--....-.+||+.+..+...-..|       ...+.+++|..|-.  +.+++++=.|++|.+...        
T Consensus       255 ~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~--v~tGSD~~~i~~WklP~~~ds~G~~~  332 (609)
T KOG4227|consen  255 SGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT--VATGSDHWGIHIWKLPRANDSYGFTQ  332 (609)
T ss_pred             CCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee--eeccCcccceEEEecCCCccccCccc
Confidence            9998887666666667777654433222221       12466777775544  445556688999987421        


Q ss_pred             ---------------eEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 038577          340 ---------------SYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTV  378 (860)
Q Consensus       340 ---------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  378 (860)
                                     .....+++|..-+..+.|+|....|++.+-.+.+++|..
T Consensus       333 IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  333 IGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             cCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence                           123446899999999999999999999999999999974

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=3.7e-16  Score=136.85  Aligned_cols=231  Identities=21%  Similarity=0.279  Sum_probs=176.7

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCC----------CeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 038577          351 DVNCLAYSPDSQLLATGADDNKVKVWTVSS----------GFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDL  420 (860)
Q Consensus       351 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~  420 (860)
                      .|.+-+++|.+++|++|..+|.|.++.+.+          ...+...++|.+++..++|..+  +|++++ ||.|+-|..
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~--~Lls~g-dG~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD--FLLSGG-DGLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh--heeecc-CceEEEeee
Confidence            355668999999999999999999998753          2345566899999999999833  666665 599999987


Q ss_pred             cccce------eeEee------CCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCC
Q 038577          421 FRYRN------FRTFT------TPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPT  488 (860)
Q Consensus       421 ~~~~~------~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~  488 (860)
                      +....      .....      ...-..+.++.+.|..+-++.++.|+ .++-||+++|+..++++||...|.++.--..
T Consensus        89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~-~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~  167 (325)
T KOG0649|consen   89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG-VIYQVDLEDGRIQREYRGHTDYVHSVVGRNA  167 (325)
T ss_pred             hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCe-EEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence            54321      11111      11234688999999888888877888 9999999999999999999999999998666


Q ss_pred             CCEEEEEeCCCcEEEEEccCCcceeEEcc---------c-CCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEe
Q 038577          489 NATLASSSWDKTVRLWNVFEGKGSVESFP---------H-THDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIE  558 (860)
Q Consensus       489 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  558 (860)
                      ...+.+|++||++|+||.++++....+..         | ...|.+++-  +..+|++|+ .-.+.+|.+++.++...++
T Consensus       168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfp  244 (325)
T KOG0649|consen  168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFP  244 (325)
T ss_pred             CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEe
Confidence            67899999999999999999986554432         1 122444444  556887776 4569999999999888887


Q ss_pred             cccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECC
Q 038577          559 GRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVA  611 (860)
Q Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~  611 (860)
                      -...                     +..+.|.  .+.+++++..+.|.-|-+.
T Consensus       245 ipa~---------------------v~~v~F~--~d~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  245 IPAR---------------------VHLVDFV--DDCVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             cccc---------------------eeEeeee--cceEEEeccccceeeeeec
Confidence            6543                     7788884  4568888888888888764

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=7.1e-17  Score=153.66  Aligned_cols=196  Identities=19%  Similarity=0.206  Sum_probs=157.4

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEee-C
Q 038577          353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFT-T  431 (860)
Q Consensus       353 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~  431 (860)
                      .+++|+++|..+++|+.||++|+|+..+...+.....|...|.++.|+|||+.|++.+.| ..++|+..++..+.... .
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            689999999999999999999999988888888888999999999999999999999999 99999999997666655 3


Q ss_pred             CCCCcEEEEEECCCC---C-EEEEEecCCCeEEEEECCCCce-----EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 038577          432 PSSRQFVSLASDQSG---E-VICAGTLDSFEIFVWSMKTGRL-----LDILSGHEGPVHGLVFSPTNATLASSSWDKTVR  502 (860)
Q Consensus       432 ~~~~~~~~~~~~~~~---~-~l~~~~~~~~~i~v~d~~~~~~-----~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~  502 (860)
                      .....+..+.|+.++   . ++++....++.|..|++...+-     ..........|++++.+++|+++|.|+.||.|-
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence            334445667777666   2 3444444444677776653322     111112345799999999999999999999999


Q ss_pred             EEEccCCcceeEEc-ccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCC
Q 038577          503 LWNVFEGKGSVESF-PHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPL  549 (860)
Q Consensus       503 iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  549 (860)
                      |++..+-+...... .|..-|+.+.|+||.+++++.+.+....+..+.
T Consensus       307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence            99998887555444 599999999999999999999999888887764

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.76  E-value=5.7e-16  Score=161.61  Aligned_cols=282  Identities=12%  Similarity=0.072  Sum_probs=208.2

Q ss_pred             CcEEEEEcccC-eEEEEeecCCceeEEEECCCC-CEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEc
Q 038577           74 QRCHFINLHCH-VVLHRVRFKYPVNAILFSPNG-KYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWS  150 (860)
Q Consensus        74 ~~i~vwd~~~~-~~~~~~~~~~~v~~~~fspdg-~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  150 (860)
                      +.+.||+++.. ..-..+....+|.++.|+|.. .++|.| .+|.|.+||+..+.... +..+......|..+++.+.|.
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-PSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-CcccccccccCCcCeEEEEEe
Confidence            47999999876 555566678999999999955 555656 88999999999876421 222334456789999999997


Q ss_pred             CCCC--eEEEeecCCeEEEEeecccccCcccccceEee------cCCCcEEEEEEccCCCCCccceEEEEcCCccEEEee
Q 038577          151 PDSN--YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLL------GHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWG  222 (860)
Q Consensus       151 ~d~~--~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~------~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~  222 (860)
                      .+..  -+++++.||.|..|+++.-.............      .....++++.|.+....    .++.|+++|.|..-+
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~----~FiVGTe~G~v~~~~  376 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN----HFIVGTEEGKVYKGC  376 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc----eEEEEcCCcEEEEEe
Confidence            7554  49999999999999887652211111111111      22346788999876654    899999999988754


Q ss_pred             ecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECC-CceeEEE
Q 038577          223 FSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMP-DFVCIHL  301 (860)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~-~~~~~~~  301 (860)
                      ..+......                    -.......+..|.+.|.++.++|-+..++....|..+++|... ...++..
T Consensus       377 r~g~~~~~~--------------------~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~  436 (555)
T KOG1587|consen  377 RKGYTPAPE--------------------VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLS  436 (555)
T ss_pred             ccCCccccc--------------------ccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchh
Confidence            443222000                    0001123456688999999999999887777779999999987 6667777


Q ss_pred             EeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc--eEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 038577          302 LSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE--SYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVS  379 (860)
Q Consensus       302 ~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  379 (860)
                      +..+...+++++|||....++++...+|.+.+||+...  ..+.....+....+.+.|+++|+.+++|...|.+.+|++.
T Consensus       437 ~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  437 LDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             hhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            77777789999999999999999888899999998654  3344444445667788899999999999999999999986


Q ss_pred             C
Q 038577          380 S  380 (860)
Q Consensus       380 ~  380 (860)
                      .
T Consensus       517 ~  517 (555)
T KOG1587|consen  517 E  517 (555)
T ss_pred             c
Confidence            3

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.76  E-value=1.8e-16  Score=165.27  Aligned_cols=264  Identities=22%  Similarity=0.295  Sum_probs=191.9

Q ss_pred             CcEEEEEccCceEEEEecCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCee--EE----EeecCCCceEEEEEee
Q 038577          329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSPD-SQLLATGADDNKVKVWTVSSGFC--FV----TFTEHTNAVTALHFMA  401 (860)
Q Consensus       329 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~--~~----~~~~~~~~v~~i~~~~  401 (860)
                      +.+.+|+++..............|+|+.|+|. ..+++.|..+|.|.+||+..+..  ..    ....|..+++.+.|..
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~  301 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ  301 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence            47899999887333333345678999999995 56777888899999999987654  22    2235889999999976


Q ss_pred             CCC--EEEEEeCCCcEEEEEccccceeeEe-----------eCCCCCcEEEEEECCCCC-EEEEEecCCCeEEEEECCCC
Q 038577          402 NNH--SLLSASLDGTVRAWDLFRYRNFRTF-----------TTPSSRQFVSLASDQSGE-VICAGTLDSFEIFVWSMKTG  467 (860)
Q Consensus       402 ~~~--~l~s~~~dg~i~~wd~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~i~v~d~~~~  467 (860)
                      +..  -+++++.||.|..|+++........           .......++++.|.+... .+++|+..| .|+.-+....
T Consensus       302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G-~v~~~~r~g~  380 (555)
T KOG1587|consen  302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEG-KVYKGCRKGY  380 (555)
T ss_pred             cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCc-EEEEEeccCC
Confidence            544  4999999999999988654331111           112234578888887554 455666666 7777443322


Q ss_pred             c--------eEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcc-CCcceeEEcccCCCeEEEEEeeCC-CEEEEE
Q 038577          468 R--------LLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVF-EGKGSVESFPHTHDVLTVVYRPDG-RQLACS  537 (860)
Q Consensus       468 ~--------~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~  537 (860)
                      +        ....+..|.++|..+.++|=+..++..+.|.+++||.-. ...++..+..+...+++++|||-. ..++++
T Consensus       381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~  460 (555)
T KOG1587|consen  381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV  460 (555)
T ss_pred             cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE
Confidence            2        233556789999999999977665555559999999987 555566666777889999999954 477888


Q ss_pred             eCCCeEEEEeCCCCc--eeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCc
Q 038577          538 TLDGQIHFWDPLNGE--LMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQ  613 (860)
Q Consensus       538 ~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~  613 (860)
                      ..||.|.+||+....  ++.+.+...                    ...+.+.|+++|+.|++|+..|.+.+|++...
T Consensus       461 d~~G~l~iWDLl~~~~~Pv~s~~~~~--------------------~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  461 DGDGNLDIWDLLQDDEEPVLSQKVCS--------------------PALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             cCCCceehhhhhccccCCcccccccc--------------------cccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence            889999999986543  333333222                    24688889999999999999999999999764

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1.1e-15  Score=142.00  Aligned_cols=304  Identities=15%  Similarity=0.244  Sum_probs=202.2

Q ss_pred             CceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEe-ecCceeEEEEEeeCCC-EEEEEEccCCcEEEEEccCce--
Q 038577          265 SKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLS-ISREKITTAVFNELGN-WLVFGCAKLGQLLVWEWRSES--  340 (860)
Q Consensus       265 ~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~-~l~~~~~~~g~i~v~d~~~~~--  340 (860)
                      ..+..++|++.-..++++..|..|++|+-.+ ++...++ ..+..+++++|.|.+. .+++++.  +.|.+|......  
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr--~gIciW~~s~tln~  175 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR--AGICIWSDSRTLNA  175 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec--ceeEEEEcCccccc
Confidence            4578899999888899999999999999877 4444443 4556899999999764 4555554  789999764321  


Q ss_pred             ------------EEEEecCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEE
Q 038577          341 ------------YILKQQGHYFDVNCLAYSPDSQLLATGAD-DNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLL  407 (860)
Q Consensus       341 ------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  407 (860)
                                  .+.+..+| .+|+++.|.+||..+++++- |..|.|||..++..+.......+.++-+.|+||+.+|+
T Consensus       176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf  254 (445)
T KOG2139|consen  176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF  254 (445)
T ss_pred             ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence                        12223455 67999999999999999876 67899999999887766655677889999999999999


Q ss_pred             EEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcC
Q 038577          408 SASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSP  487 (860)
Q Consensus       408 s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~  487 (860)
                      ++..|+..++|................ .+...+++|+|++|+.+....  -.                   +.++.|..
T Consensus       255 aAt~davfrlw~e~q~wt~erw~lgsg-rvqtacWspcGsfLLf~~sgs--p~-------------------lysl~f~~  312 (445)
T KOG2139|consen  255 AATCDAVFRLWQENQSWTKERWILGSG-RVQTACWSPCGSFLLFACSGS--PR-------------------LYSLTFDG  312 (445)
T ss_pred             EecccceeeeehhcccceecceeccCC-ceeeeeecCCCCEEEEEEcCC--ce-------------------EEEEeecC
Confidence            999999999996544332222222222 889999999999998877653  22                   23333332


Q ss_pred             CCCEEE-EEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCC--------eEEEEeCCCCceeEEEe
Q 038577          488 TNATLA-SSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDG--------QIHFWDPLNGELMYTIE  558 (860)
Q Consensus       488 ~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------~i~iwd~~~~~~~~~~~  558 (860)
                      ....+- .++.....-+-|+..-.......--.+++.+++|.|.|.+||+.-..+        .|.+||....-.+.-..
T Consensus       313 ~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~  392 (445)
T KOG2139|consen  313 EDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSY  392 (445)
T ss_pred             CCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEe
Confidence            211111 222222233334432211111112357789999999999999986543        36777765443333221


Q ss_pred             cccccCCCccccccccccccCCCCcEEEEEEec---CCCEEEEecCCCeEEEEECC
Q 038577          559 GRRDISGGRLMTDRRSAANSSSGKCFTTLCYSA---DGSYILAGGSSKYICMYDVA  611 (860)
Q Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~---~g~~l~~~~~dg~v~vwd~~  611 (860)
                      ....                 .+.+...++|+|   +|.+|..+=+.|.+.-|++.
T Consensus       393 cg~i-----------------~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  393 CGMI-----------------GGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             cccc-----------------cCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence            1100                 011245566665   56777777788888888764

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.75  E-value=5.8e-15  Score=135.21  Aligned_cols=237  Identities=14%  Similarity=0.250  Sum_probs=177.5

Q ss_pred             eeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccC--eEEEEEcCCCCEEEE-EeCC------CcEEEEEC
Q 038577          308 KITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFD--VNCLAYSPDSQLLAT-GADD------NKVKVWTV  378 (860)
Q Consensus       308 ~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~-~~~d------g~i~iwd~  378 (860)
                      ...+++|+.|...++++..  .-.+||+.+.-+.....+.+.+.  +..+-|  ..++++. |+.+      +.+.|||-
T Consensus         7 ~~lsvs~NQD~ScFava~~--~Gfriyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD   82 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATD--TGFRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDD   82 (346)
T ss_pred             ceeEEEEccCCceEEEEec--CceEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEec
Confidence            4455899999998888765  56889988764332222222222  112222  2234443 3332      47999997


Q ss_pred             CCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcc-ccceeeEeeCCC-CCcEEEEEECCCCCEEEEEecCC
Q 038577          379 SSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLF-RYRNFRTFTTPS-SRQFVSLASDQSGEVICAGTLDS  456 (860)
Q Consensus       379 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~  456 (860)
                      ...+++.++. ...+|.++.+.++  .+++.- ++.|.+|.+. +.+.++.+.... +....+++...+..+||.-+...
T Consensus        83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~  158 (346)
T KOG2111|consen   83 LKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT  158 (346)
T ss_pred             ccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence            7777777775 6789999999877  455553 5689999998 556666665443 44566666666777888777776


Q ss_pred             CeEEEEECCCCce--EEEecCcccCeEEEEEcCCCCEEEEEeCCCc-EEEEEccCCcceeEEcc--cCCCeEEEEEeeCC
Q 038577          457 FEIFVWSMKTGRL--LDILSGHEGPVHGLVFSPTNATLASSSWDKT-VRLWNVFEGKGSVESFP--HTHDVLTVVYRPDG  531 (860)
Q Consensus       457 ~~i~v~d~~~~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~  531 (860)
                      |.|++-|+...+.  ...+.+|.+.|.|++.+-+|..+||+|..|+ |||||..+++.+.++..  ....|.+++|||++
T Consensus       159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~  238 (346)
T KOG2111|consen  159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS  238 (346)
T ss_pred             ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc
Confidence            7999999987665  4778899999999999999999999999997 89999999998888774  56679999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCc
Q 038577          532 RQLACSTLDGQIHFWDPLNGE  552 (860)
Q Consensus       532 ~~l~~~~~dg~i~iwd~~~~~  552 (860)
                      .+||++++.|+++||.+....
T Consensus       239 s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  239 SWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             cEEEEEcCCCeEEEEEeecCC
Confidence            999999999999999987643

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.75  E-value=1.5e-15  Score=162.79  Aligned_cols=277  Identities=18%  Similarity=0.195  Sum_probs=192.3

Q ss_pred             CceEEEEecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCC-------CeeEEEeecCCCceEEEEEeeCCCEEEEE
Q 038577          338 SESYILKQQGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSS-------GFCFVTFTEHTNAVTALHFMANNHSLLSA  409 (860)
Q Consensus       338 ~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~  409 (860)
                      .|..+..+..|...+..++.++.. .++++|+.||+|++|+...       .+...++....+.+.++.+.+.+..++.+
T Consensus      1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred             cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence            356667777888888888887765 9999999999999999863       12333444457889999999999999999


Q ss_pred             eCCCcEEEEEccccc-------eeeEeeCCCCCcEEEEE-ECC-CCC-EEEEEecCCCeEEEEECCCCceEEEec--Ccc
Q 038577          410 SLDGTVRAWDLFRYR-------NFRTFTTPSSRQFVSLA-SDQ-SGE-VICAGTLDSFEIFVWSMKTGRLLDILS--GHE  477 (860)
Q Consensus       410 ~~dg~i~~wd~~~~~-------~~~~~~~~~~~~~~~~~-~~~-~~~-~l~~~~~~~~~i~v~d~~~~~~~~~~~--~h~  477 (860)
                      +.||.|++.++....       +.+.......+.+..+. +.. .+. .++.+...+ .|..||++.......++  ...
T Consensus      1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~-~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLS-RIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred             cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEecc-ceEEecchhhhhHHhhhcCccc
Confidence            999999999987521       11222222333344332 222 233 566666666 89999999776554443  346


Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc-ccCCCeEEEEEeeC---CCEEEEEe--CCCeEEEEeCCCC
Q 038577          478 GPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF-PHTHDVLTVVYRPD---GRQLACST--LDGQIHFWDPLNG  551 (860)
Q Consensus       478 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~---~~~l~~~~--~dg~i~iwd~~~~  551 (860)
                      |.|++++.+|.+.+++.|+..|.+-+||++-+..+.... ++..+++.+...|-   ....++++  ..+.|.+|++.+|
T Consensus      1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred             cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence            889999999999999999999999999998887655544 56678888888773   34555554  4677999999999


Q ss_pred             ceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEE
Q 038577          552 ELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLL  616 (860)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~  616 (860)
                      ....++....+...-....... .......-+....++...+.++.+|+.|..|+.||....+..
T Consensus      1276 ~~~~vl~~s~~~p~ls~~~Ps~-~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSN-DARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             cceEEEEcCCCCcchhhhcccc-cCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence            8877776652221111100000 000122223344455556779999999999999999876544

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=2e-16  Score=154.67  Aligned_cols=244  Identities=12%  Similarity=0.100  Sum_probs=167.6

Q ss_pred             EeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee--cCCceeEEEECC--CCCEEEEE-eCCeEEEE
Q 038577           45 VTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR--FKYPVNAILFSP--NGKYIAVG-TGKLVQIW  119 (860)
Q Consensus        45 ~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~--~~~~v~~~~fsp--dg~~la~~-~~~~i~iw  119 (860)
                      ...+.||.+.|.|++|+.||.+||+|+.|-++.|||.-..+.++.+.  |...|-++.|-|  +.+++++| +|..|+++
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            34567999999999999999999999999999999999999999887  999999999999  45777777 89999999


Q ss_pred             eCCCCCc---ccceeEEEEEeeccCCCeEEEEEcCCC-CeEEEeecCCeEEEEeecccccCcccc-c---ceEeecCCCc
Q 038577          120 RSPGFKK---EVFAFELIRTLADCNDKVTALNWSPDS-NYLLVGSKDLAVRLFYVKEKLKGIHTN-K---PFLLLGHRDS  191 (860)
Q Consensus       120 d~~~~~~---~~~~~~~~~~~~~h~~~v~~l~~s~d~-~~l~s~~~dg~v~vwd~~~~~~~~~~~-~---~~~~~~h~~~  191 (860)
                      |+...+.   .-......+.+..|...|..++-.|++ ..+.++++||+++-+|+.....+.+.. .   ...+.+..-.
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie  202 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE  202 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence            9985221   111222345667899999999999999 788899999999999998752221111 1   1111122234


Q ss_pred             EEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeee----ccccCCCCce
Q 038577          192 VVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRK----DDFSQAPSKV  267 (860)
Q Consensus       192 i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v  267 (860)
                      ..++.++|....    +|++|+.|-..++||...........-...  +.+......++.+.....    .........+
T Consensus       203 lk~ltisp~rp~----~laVGgsdpfarLYD~Rr~lks~~s~~~~~--~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~  276 (758)
T KOG1310|consen  203 LKCLTISPSRPY----YLAVGGSDPFARLYDRRRVLKSFRSDGTMN--TCPPKDCRCVRYFSPGHLKNSQGNLDRYITCC  276 (758)
T ss_pred             eeeeeecCCCCc----eEEecCCCchhhhhhhhhhccCCCCCcccc--CCCCcccchhheecCccccCcccccccceeee
Confidence            567888887764    899999999999999643221111000000  000101111111111100    0011111235


Q ss_pred             EEEEecCCCCEEEEEEcCCeEEEEECC
Q 038577          268 TACDYHRGLDMVVVGFSNGVFGLYQMP  294 (860)
Q Consensus       268 ~~~~~~~~~~~l~~~~~~g~i~~~~~~  294 (860)
                      +-+.|+|+|.-|++.-..-.|+++|+.
T Consensus       277 t~vtfnpNGtElLvs~~gEhVYlfdvn  303 (758)
T KOG1310|consen  277 TYVTFNPNGTELLVSWGGEHVYLFDVN  303 (758)
T ss_pred             EEEEECCCCcEEEEeeCCeEEEEEeec
Confidence            677899999999998888899999875

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.74  E-value=5e-18  Score=173.89  Aligned_cols=285  Identities=18%  Similarity=0.303  Sum_probs=225.3

Q ss_pred             eccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEc
Q 038577          257 KDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEW  336 (860)
Q Consensus       257 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~  336 (860)
                      ...+.+|...|.|+.|...|.++++|+.|..++||.+.+..++...++|.+.|+.++.+.....+++++.+ ..|++|.+
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D-~vIrvWrl  261 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASND-KVIRVWRL  261 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccC-ceEEEEec
Confidence            35567898999999999999999999999999999999999999999999999999999888777777655 89999999


Q ss_pred             cCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE---ee-cCCCceEEEEEeeCCCEEEEEeCC
Q 038577          337 RSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVT---FT-EHTNAVTALHFMANNHSLLSASLD  412 (860)
Q Consensus       337 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~-~~~~~v~~i~~~~~~~~l~s~~~d  412 (860)
                      ..+..+..+.+|.+.|++++|+|-.    +.+.||++++||.+-...+..   .. ....-+.++.|...+..+++++.|
T Consensus       262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d  337 (1113)
T KOG0644|consen  262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD  337 (1113)
T ss_pred             CCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence            9999999999999999999999965    678899999999871111111   01 123456677788888899999999


Q ss_pred             CcEEEEEccccceeeEeeCCCCCcEEEEEECCCCC-EEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCE
Q 038577          413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGE-VICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNAT  491 (860)
Q Consensus       413 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~  491 (860)
                      +.-..|.+.......       ..+.-+..+.+-. +.+++-.+- .+.+|++.+|.+.+.+.+|...+..+.++|-+..
T Consensus       338 ~ea~n~e~~~l~~~~-------~~lif~t~ssd~~~~~~~ar~~~-~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~r  409 (1113)
T KOG0644|consen  338 GEARNHEFEQLAWRS-------NLLIFVTRSSDLSSIVVTARNDH-RLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPR  409 (1113)
T ss_pred             cccccchhhHhhhhc-------cceEEEeccccccccceeeeeee-EeeeeecccchhhhhhcccccceeeeeecCCCcH
Confidence            998888764321110       0111111111222 233333333 8999999999999999999999999999996655


Q ss_pred             -EEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcee
Q 038577          492 -LASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELM  554 (860)
Q Consensus       492 -l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  554 (860)
                       ..+++.||...|||+-.+.++.........+..-.||+||..++....-|.++|.....++..
T Consensus       410 i~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~  473 (1113)
T KOG0644|consen  410 IAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ  473 (1113)
T ss_pred             hhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCccc
Confidence             558999999999999988877666555677888899999999999988899999987665443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.74  E-value=4.3e-16  Score=166.99  Aligned_cols=345  Identities=16%  Similarity=0.206  Sum_probs=218.6

Q ss_pred             EEEEeeccCCCeEEEEEcCCC-CeEEEeecCCeEEEEeecccccC-cccccceEeecCCCcEEEEEEccCCCCCccceEE
Q 038577          133 LIRTLADCNDKVTALNWSPDS-NYLLVGSKDLAVRLFYVKEKLKG-IHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIY  210 (860)
Q Consensus       133 ~~~~~~~h~~~v~~l~~s~d~-~~l~s~~~dg~v~vwd~~~~~~~-~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~  210 (860)
                      ++..+..|...+..++.+++. .++++|+.||+|++|+....... ...+...++......+..+.+.+.+.     .++
T Consensus      1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~-----~~A 1114 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD-----QFA 1114 (1431)
T ss_pred             EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC-----eEE
Confidence            578888999999999988766 99999999999999998765211 11123344444678889999999998     999


Q ss_pred             EEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCC-CC-EEEEEEcCCeE
Q 038577          211 TIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRG-LD-MVVVGFSNGVF  288 (860)
Q Consensus       211 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~-~l~~~~~~g~i  288 (860)
                      .++.||.|.+.+++.......                   .............+..+..-++... +. .++.++..+.|
T Consensus      1115 v~t~DG~v~~~~id~~~~~~~-------------------~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~i 1175 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKR-------------------VATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRI 1175 (1431)
T ss_pred             EEcCCCeEEEEEccccccccc-------------------eeeeeecccccCCCceEEeecccccccceeEEEEEeccce
Confidence            999999999999886311000                   0011111222222233333344332 23 68889999999


Q ss_pred             EEEECCCceeEEEEe--ecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEec-CcccCeEEEEEcCCC---C
Q 038577          289 GLYQMPDFVCIHLLS--ISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQ-GHYFDVNCLAYSPDS---Q  362 (860)
Q Consensus       289 ~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~---~  362 (860)
                      ..||+........++  ...+.|++++.+|-+.|+++|.+. |.+.+||++-+..+..+. ++..+++.+..+|-.   .
T Consensus      1176 v~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~-G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S 1254 (1431)
T KOG1240|consen 1176 VSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSR-GQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQES 1254 (1431)
T ss_pred             EEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCC-ceEEEEEeecCceeecccCcccCCcceEEeeccCCCCc
Confidence            999998766554443  345689999999999999999887 999999999988887763 355677777776632   3


Q ss_pred             EEEEE-e-CCCcEEEEECCCCeeEEEeecCC-------------------CceEEEEEeeCCCEEEEEeCCCcEEEEEcc
Q 038577          363 LLATG-A-DDNKVKVWTVSSGFCFVTFTEHT-------------------NAVTALHFMANNHSLLSASLDGTVRAWDLF  421 (860)
Q Consensus       363 ~l~~~-~-~dg~i~iwd~~~~~~~~~~~~~~-------------------~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~  421 (860)
                      ..+++ + ..+.|.+|++.+|.+...+....                   -......+...+..+++|+.|..|+.||..
T Consensus      1255 ~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1255 VSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred             eEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence            44444 3 47889999999987766654320                   111122233345678999999999999986


Q ss_pred             ccceee-EeeCCCCCcEEEEEECCCCCEEEEEecCCCeE-EEEECC-----CCceEEE--------ecCcccCeEEEEEc
Q 038577          422 RYRNFR-TFTTPSSRQFVSLASDQSGEVICAGTLDSFEI-FVWSMK-----TGRLLDI--------LSGHEGPVHGLVFS  486 (860)
Q Consensus       422 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i-~v~d~~-----~~~~~~~--------~~~h~~~v~~l~~s  486 (860)
                      ...... ....+.. .......+.+ ..++.++.-- .. ..+...     .+.....        -..|..+|+++++.
T Consensus      1335 ~p~~ss~~~~~~s~-~~~~~~~s~~-~~~i~~~~~i-~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~ 1411 (1431)
T KOG1240|consen 1335 RPEISSYAVPGPST-SYSTNSESYD-LSTIPGSQFI-DEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATL 1411 (1431)
T ss_pred             CcccccccccCccc-cccccchhcc-ccccCCCccc-hhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhh
Confidence            654331 1111110 0111111110 0111111000 00 000000     0100111        12478899999887


Q ss_pred             CC-CCEEEEEeCCCcEEEEE
Q 038577          487 PT-NATLASSSWDKTVRLWN  505 (860)
Q Consensus       487 ~~-~~~l~s~~~dg~i~iwd  505 (860)
                      .. ..+|++++.||.|++|.
T Consensus      1412 ~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1412 KSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             ccCccEEEEecCCCeeeecC
Confidence            64 46899999999999993

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.74  E-value=1.1e-15  Score=143.69  Aligned_cols=239  Identities=14%  Similarity=0.180  Sum_probs=180.2

Q ss_pred             cceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccc
Q 038577          181 KPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDF  260 (860)
Q Consensus       181 ~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (860)
                      ..-...||+++|..+.|+|-...    .|++|++|.+|.+|++..+..                               .
T Consensus        73 ~~P~v~GHt~~vLDi~w~PfnD~----vIASgSeD~~v~vW~IPe~~l-------------------------------~  117 (472)
T KOG0303|consen   73 SYPLVCGHTAPVLDIDWCPFNDC----VIASGSEDTKVMVWQIPENGL-------------------------------T  117 (472)
T ss_pred             CCCCccCccccccccccCccCCc----eeecCCCCceEEEEECCCccc-------------------------------c
Confidence            34567799999999999997654    899999999999998865321                               0


Q ss_pred             cCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce
Q 038577          261 SQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES  340 (860)
Q Consensus       261 ~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~  340 (860)
                                                      ..-.+.+..+.+|...|..++|+|....++.+++.|..|.+||+.+++
T Consensus       118 --------------------------------~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tge  165 (472)
T KOG0303|consen  118 --------------------------------RDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE  165 (472)
T ss_pred             --------------------------------cCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCc
Confidence                                            001145666778888999999999887776666667999999999999


Q ss_pred             EEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCC-ceEEEEEeeCCCEEEEEe----CCCcE
Q 038577          341 YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTN-AVTALHFMANNHSLLSAS----LDGTV  415 (860)
Q Consensus       341 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~s~~----~dg~i  415 (860)
                      .+..+. |...|.++.|+.||.++++.+.|..|+|||.++++.+..-.+|.+ ....+.|..++. +++.|    .+..+
T Consensus       166 ali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~  243 (472)
T KOG0303|consen  166 ALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQI  243 (472)
T ss_pred             eeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccce
Confidence            888877 999999999999999999999999999999999999998878876 345566778887 55444    46789


Q ss_pred             EEEEccccce-eeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceE-EEecC--cccCeEEEEEcCC
Q 038577          416 RAWDLFRYRN-FRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLL-DILSG--HEGPVHGLVFSPT  488 (860)
Q Consensus       416 ~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~-~~~~~--h~~~v~~l~~s~~  488 (860)
                      .+||..+... +..........+.---+++|...++.++...+.|+.|.+....+. +-+..  ...+-..+.|-|.
T Consensus       244 aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  244 ALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK  320 (472)
T ss_pred             eccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence            9999876443 222233444567777789999999887776669999998876532 22221  2334455556554

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=2.8e-13  Score=137.10  Aligned_cols=471  Identities=15%  Similarity=0.206  Sum_probs=303.6

Q ss_pred             cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCccc--------ceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecC
Q 038577           92 FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEV--------FAFELIRTLADCNDKVTALNWSPDSNYLLVGSKD  162 (860)
Q Consensus        92 ~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~--------~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d  162 (860)
                      ......|++|+.+..+||+| .+|.++|..+.+.....        .....-+++.||.+.|.-+.|+...+.|-+...+
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            34567899999999999999 89999999887643221        2233456789999999999999999999999999


Q ss_pred             CeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCC
Q 038577          163 LAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSP  242 (860)
Q Consensus       163 g~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~  242 (860)
                      |-|.||-+-.+ ..   .....-......|.+++|..||.     .+...-.||.|.+=.++++                
T Consensus        93 GlIiVWmlykg-sW---~EEMiNnRnKSvV~SmsWn~dG~-----kIcIvYeDGavIVGsvdGN----------------  147 (1189)
T KOG2041|consen   93 GLIIVWMLYKG-SW---CEEMINNRNKSVVVSMSWNLDGT-----KICIVYEDGAVIVGSVDGN----------------  147 (1189)
T ss_pred             ceEEEEeeecc-cH---HHHHhhCcCccEEEEEEEcCCCc-----EEEEEEccCCEEEEeeccc----------------
Confidence            99999998776 22   22333344667889999999999     9999999999999988875                


Q ss_pred             CCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCc-------eeEEE----EeecCceeEE
Q 038577          243 GTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDF-------VCIHL----LSISREKITT  311 (860)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~-------~~~~~----~~~~~~~i~~  311 (860)
                             +.|....+..      ....+.|++|.+.++.+-.+|.+.+||....       .+...    +......+..
T Consensus       148 -------RIwgKeLkg~------~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~  214 (1189)
T KOG2041|consen  148 -------RIWGKELKGQ------LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAE  214 (1189)
T ss_pred             -------eecchhcchh------eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccc
Confidence                   4564433221      2446889999999999999999999998531       11111    1112224555


Q ss_pred             EEEe--------eCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCC---------CcEE
Q 038577          312 AVFN--------ELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADD---------NKVK  374 (860)
Q Consensus       312 ~~~s--------~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~  374 (860)
                      +.|.        ||...++++..+ |.+.+..-.+......+. ....+....|+++|..|++++.+         +.|.
T Consensus       215 i~w~~g~~~~v~pdrP~lavcy~n-Gr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~  292 (1189)
T KOG2041|consen  215 IEWNTGPYQPVPPDRPRLAVCYAN-GRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVH  292 (1189)
T ss_pred             eeeccCccccCCCCCCEEEEEEcC-ceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEE
Confidence            6654        466777777665 888777554433222221 22458889999999999998764         2566


Q ss_pred             EEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEec
Q 038577          375 VWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTL  454 (860)
Q Consensus       375 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  454 (860)
                      +|. .-|..+.+++.....|++++|-..|-.++.+ .|+.|.+=+++-.-....+.       ..+.+-..+.-+     
T Consensus       293 Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e-------~TvVy~y~~~e~-----  358 (1189)
T KOG2041|consen  293 FYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIE-------ETVVYVYQKEEL-----  358 (1189)
T ss_pred             Eec-cchhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEEEeecccceEEEee-------eEEEEEEccCCC-----
Confidence            665 3478888898889999999998777666554 56788776664321110000       000000000000     


Q ss_pred             CCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccC-CcceeEE-----cc--cCCCeE---
Q 038577          455 DSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFE-GKGSVES-----FP--HTHDVL---  523 (860)
Q Consensus       455 ~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~-----~~--~~~~v~---  523 (860)
                      -...|.+||..+.+......   .+..+++++.+...|+.-..||.+.-++.-. .......     .+  ....++   
T Consensus       359 p~y~i~Fwdtk~nek~vK~V---~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdir  435 (1189)
T KOG2041|consen  359 PQYGIMFWDTKTNEKTVKTV---THFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIR  435 (1189)
T ss_pred             cceEEEEEecccChhhhhhh---cceeehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceee
Confidence            01168899988765432222   2345788887777788888888887664321 1111111     11  111222   


Q ss_pred             EEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccc-------ccc-----ccccCCCCcEEEEEEec
Q 038577          524 TVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTD-------RRS-----AANSSSGKCFTTLCYSA  591 (860)
Q Consensus       524 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-----~~~~~~~~~i~~l~~s~  591 (860)
                      -.-..-++.+++.++.+ .+.+|.....+....+.+.+....++...+       ...     ...-....+|.+++.| 
T Consensus       436 P~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s-  513 (1189)
T KOG2041|consen  436 PKFVCVNGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS-  513 (1189)
T ss_pred             eeEEEecceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec-
Confidence            22222367778888766 488998766655444433111111111100       000     1112345678888874 


Q ss_pred             CCCEEEEecCCCeEEEEECCCceEEEEEeec
Q 038577          592 DGSYILAGGSSKYICMYDVADQVLLRRFQIT  622 (860)
Q Consensus       592 ~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~  622 (860)
                       .++|+++-.+|.|.-|.+.+..+..++...
T Consensus       514 -dk~l~vareSG~I~rySl~nv~l~n~y~~n  543 (1189)
T KOG2041|consen  514 -DKFLMVARESGGIYRYSLNNVVLTNSYPVN  543 (1189)
T ss_pred             -ceEEEEEeccCceEEEEecceeeeeccccC
Confidence             678999999999999999999888766543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=5.4e-15  Score=145.97  Aligned_cols=335  Identities=17%  Similarity=0.189  Sum_probs=228.0

Q ss_pred             CcEEEe-CCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEE-----cC-----CCcEEEEEcccC
Q 038577           16 GNAVLS-QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTV-----DE-----NQRCHFINLHCH   84 (860)
Q Consensus        16 ~~~~~s-dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~-----~~-----d~~i~vwd~~~~   84 (860)
                      ...++| +|+++|+..+..+.|++..++...... .- ..+.++.|||-|.+|.+-     ..     ...+.+|+++++
T Consensus        38 ~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~-~~-~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~  115 (566)
T KOG2315|consen   38 NVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCV-EL-KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETG  115 (566)
T ss_pred             eeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEe-cc-ceeeeeeecccccccccccccccccCCCCCCCceeeeeeccc
Confidence            357788 999999999999999999999643332 12 288999999999999863     11     246789999997


Q ss_pred             eEEEEee--cCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCC--CeEEE--
Q 038577           85 VVLHRVR--FKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDS--NYLLV--  158 (860)
Q Consensus        85 ~~~~~~~--~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~--~~l~s--  158 (860)
                      .....+.  .+.. .+..|++|..+.|-...+.+.+|+..+.+.      ..+  .-|...|+.+.+||.+  ..+|+  
T Consensus       116 ~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~------~~~--kl~~~~i~~f~lSpgp~~~~vAvyv  186 (566)
T KOG2315|consen  116 VQRSQIQKKMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKT------IQH--KLSVSGITMLSLSPGPEPPFVAVYV  186 (566)
T ss_pred             eehhheehhhhcC-cccccccchhhhhhhhcceEEEEecCCccc------eee--eeeccceeeEEecCCCCCceEEEEc
Confidence            7666665  2222 589999999888777899999999987543      222  3367789999999974  34554  


Q ss_pred             ---eecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCC---------ccEEEeeecCC
Q 038577          159 ---GSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARD---------CYMFSWGFSGN  226 (860)
Q Consensus       159 ---~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~d---------g~i~~w~~~~~  226 (860)
                         .|.-+.|+||........   .....-.-....-..+.|.+-|..  ...|++..-|         .++++.++++.
T Consensus       187 Pe~kGaPa~vri~~~~~~~~~---~~~a~ksFFkadkvqm~WN~~gt~--LLvLastdVDktn~SYYGEq~Lyll~t~g~  261 (566)
T KOG2315|consen  187 PEKKGAPASVRIYKYPEEGQH---QPVANKSFFKADKVQMKWNKLGTA--LLVLASTDVDKTNASYYGEQTLYLLATQGE  261 (566)
T ss_pred             cCCCCCCcEEEEecccccccc---chhhhccccccceeEEEeccCCce--EEEEEEEeecCCCccccccceEEEEEecCc
Confidence               355678999988733100   111111112222334666666652  1122222223         24555555521


Q ss_pred             CCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEE--EEcCCeEEEEECCCceeEEEEee
Q 038577          227 DGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVV--GFSNGVFGLYQMPDFVCIHLLSI  304 (860)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~~g~i~~~~~~~~~~~~~~~~  304 (860)
                      .                             ...--...++|.++.|+|+++.+++  |..-..+.+||+ .+..+  +..
T Consensus       262 s-----------------------------~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl-r~~~v--~df  309 (566)
T KOG2315|consen  262 S-----------------------------VSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL-RGKPV--FDF  309 (566)
T ss_pred             e-----------------------------EEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcC-CCCEe--EeC
Confidence            1                             1111234678999999999987664  566789999998 34444  344


Q ss_pred             cCceeEEEEEeeCCCEEEEEEcc--CCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeC------CCcEEEE
Q 038577          305 SREKITTAVFNELGNWLVFGCAK--LGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGAD------DNKVKVW  376 (860)
Q Consensus       305 ~~~~i~~~~~s~~~~~l~~~~~~--~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iw  376 (860)
                      ..++-..+-|+|.|+.+++++-.  .|.+.+||..+.+.+..+....  -+-+.|+|||.+|+|++.      |+.++||
T Consensus       310 ~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiw  387 (566)
T KOG2315|consen  310 PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIW  387 (566)
T ss_pred             CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEE
Confidence            56778899999999999998865  3899999999988888776543  456899999999999875      6789999


Q ss_pred             ECCCCeeEEEeecCCCceEEEEEeeC
Q 038577          377 TVSSGFCFVTFTEHTNAVTALHFMAN  402 (860)
Q Consensus       377 d~~~~~~~~~~~~~~~~v~~i~~~~~  402 (860)
                      +.. |..+....- ......+.|-|-
T Consensus       388 hyt-G~~l~~~~f-~sEL~qv~W~P~  411 (566)
T KOG2315|consen  388 HYT-GSLLHEKMF-KSELLQVEWRPF  411 (566)
T ss_pred             Eec-Cceeehhhh-hHhHhheeeeec
Confidence            974 555443221 115667777654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.73  E-value=1.5e-12  Score=125.67  Aligned_cols=437  Identities=13%  Similarity=0.114  Sum_probs=250.6

Q ss_pred             CccCeeEEEEcCC--CCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEE--------eCCeEEEEe
Q 038577           51 SSSNICRIAVSPD--GTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG--------TGKLVQIWR  120 (860)
Q Consensus        51 h~~~v~~va~spd--g~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~--------~~~~i~iwd  120 (860)
                      |.-.....-..||  |..+...+.| .+..+++.+|+..+...+-+-|+...|+|||+.+|..        ....+.+.+
T Consensus        35 h~~cM~n~~l~PDI~GD~IiFt~~D-dlWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~  113 (668)
T COG4946          35 HEFCMKNYYLNPDIYGDRIIFTCCD-DLWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVP  113 (668)
T ss_pred             hhhhhhhhhcCCcccCcEEEEEech-HHHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEe
Confidence            5444555556675  5555544433 3556678899999888888999999999999999984        345788888


Q ss_pred             CCCCCcccceeEEEEEeeccCCCeEE-EEEcCCCCeEEEeecCCeEE----EEeecccccCcccccceEeecCCCcEEEE
Q 038577          121 SPGFKKEVFAFELIRTLADCNDKVTA-LNWSPDSNYLLVGSKDLAVR----LFYVKEKLKGIHTNKPFLLLGHRDSVVGC  195 (860)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~s~d~~~l~s~~~dg~v~----vwd~~~~~~~~~~~~~~~~~~h~~~i~~~  195 (860)
                      .++|+.        ++++-.....+. ..|+|||+.+++...-.-..    +|.+...  +     ....+-.-++.+.+
T Consensus       114 ~e~Ge~--------kRiTyfGr~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~d--g-----~~~e~LnlGpathi  178 (668)
T COG4946         114 SEDGEA--------KRITYFGRRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVD--G-----IKTEPLNLGPATHI  178 (668)
T ss_pred             CCCCcE--------EEEEEeccccceeeccCCCCCEEEEeccCCCcccceeeeEEccC--C-----ceeeeccCCceeeE
Confidence            888873        222222233333 45999999888765432222    2222211  0     00001111222222


Q ss_pred             EEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCC
Q 038577          196 FFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRG  275 (860)
Q Consensus       196 ~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  275 (860)
                      .+                .||.+.+ --.+-                     ++..|.--     .+.   ..       
T Consensus       179 v~----------------~dg~ivi-gRnty---------------------dLP~WK~Y-----kGG---tr-------  205 (668)
T COG4946         179 VI----------------KDGIIVI-GRNTY---------------------DLPHWKGY-----KGG---TR-------  205 (668)
T ss_pred             EE----------------eCCEEEE-ccCcc---------------------cCcccccc-----cCC---cc-------
Confidence            22                2232211 11110                     01122110     000   00       


Q ss_pred             CCEEEEEEcCC--eEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccC--CcEEEEEccCceEEEEecCcccC
Q 038577          276 LDMVVVGFSNG--VFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKL--GQLLVWEWRSESYILKQQGHYFD  351 (860)
Q Consensus       276 ~~~l~~~~~~g--~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~--g~i~v~d~~~~~~~~~~~~~~~~  351 (860)
                      | .+.++...|  -=.+.|++            +.|.+-.+-  +..+.+.+.-+  |.++--|+..........-|  .
T Consensus       206 G-klWis~d~g~tFeK~vdl~------------~~vS~PmIV--~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFt--d  268 (668)
T COG4946         206 G-KLWISSDGGKTFEKFVDLD------------GNVSSPMIV--GERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFT--D  268 (668)
T ss_pred             c-eEEEEecCCcceeeeeecC------------CCcCCceEE--cceEEEEecccCccceEEeccCCchhhhcCCch--h
Confidence            0 111222222  11122221            122222221  12222222222  44554455443322211111  2


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeec---C---CCc--eEE---EE-Eee-CCCEEEEEeCCCcEEEE
Q 038577          352 VNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTE---H---TNA--VTA---LH-FMA-NNHSLLSASLDGTVRAW  418 (860)
Q Consensus       352 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~---~~~--v~~---i~-~~~-~~~~l~s~~~dg~i~~w  418 (860)
                      -.+-..+.||+.++.. ..|.|.+||..+......-.+   .   ..+  +.-   +. |++ +|.+++..+. |...+.
T Consensus       269 YY~R~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~  346 (668)
T COG4946         269 YYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIM  346 (668)
T ss_pred             ccccccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEE
Confidence            2334457789988764 458999999876544321111   0   000  111   11 222 5677777765 556665


Q ss_pred             EccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCC
Q 038577          419 DLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWD  498 (860)
Q Consensus       419 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d  498 (860)
                      +...+-.   ++.++...+.-..+..+++-++.|..|+-.+-+||..+++.. .+...-+.|.++..+|+|++++.+...
T Consensus       347 ~~~~~~~---iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr  422 (668)
T COG4946         347 RPWDGYS---IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDR  422 (668)
T ss_pred             CCCCCee---EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCc
Confidence            5544332   334445557777777777788889888889999999877654 445577899999999999999999988


Q ss_pred             CcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCe----EEEEeCCCCceeEEEecccccCCCcccccccc
Q 038577          499 KTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQ----IHFWDPLNGELMYTIEGRRDISGGRLMTDRRS  574 (860)
Q Consensus       499 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  574 (860)
                      ..+.+.|+.++.....-....+-|+.++|+|+++++|-+--+|.    |++||+.+++.........             
T Consensus       423 ~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta-------------  489 (668)
T COG4946         423 FELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTA-------------  489 (668)
T ss_pred             eEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcc-------------
Confidence            99999999999865555567778999999999999999977764    8999998887655432221             


Q ss_pred             ccccCCCCcEEEEEEecCCCEEEEec
Q 038577          575 AANSSSGKCFTTLCYSADGSYILAGG  600 (860)
Q Consensus       575 ~~~~~~~~~i~~l~~s~~g~~l~~~~  600 (860)
                              .-.+-+|.|||++|.--+
T Consensus       490 --------~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         490 --------YDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             --------cccCcccCCCCcEEEEEe
Confidence                    125668999999887544

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.73  E-value=4e-16  Score=146.50  Aligned_cols=206  Identities=21%  Similarity=0.366  Sum_probs=170.9

Q ss_pred             ecCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------eeEEEeecCCCceEEEEEeeCC-CEEEEEeCCCcE
Q 038577          345 QQGHYFDVNCLAYSP-DSQLLATGADDNKVKVWTVSSG-------FCFVTFTEHTNAVTALHFMANN-HSLLSASLDGTV  415 (860)
Q Consensus       345 ~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i  415 (860)
                      +.+|.++|..++|+| +...||+|+.|.+|.||.+..+       +.+..+.+|...|--++|+|.. +.|+++|.|.+|
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v  156 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV  156 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence            468999999999999 5678999999999999998754       4577889999999999999964 688999999999


Q ss_pred             EEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccC-eEEEEEcCCCCEEEE
Q 038577          416 RAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGP-VHGLVFSPTNATLAS  494 (860)
Q Consensus       416 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~-v~~l~~s~~~~~l~s  494 (860)
                      .+|++.+++....+.  +...+.++.|+.+|.++++++.|. .|+|||.++++.+..-.+|.+. -....|-.+|..+-|
T Consensus       157 ~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~TtckDK-kvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT  233 (472)
T KOG0303|consen  157 SIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCKDK-KVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT  233 (472)
T ss_pred             EEEeccCCceeeecC--CCCeEEEEEeccCCceeeeecccc-eeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence            999999999887776  677899999999999999999999 9999999999999988888753 344567778885444


Q ss_pred             Ee---CCCcEEEEEccCCccee--EEcccCCCeEEEEEeeCCCEEEEEe-CCCeEEEEeCCCCce
Q 038577          495 SS---WDKTVRLWNVFEGKGSV--ESFPHTHDVLTVVYRPDGRQLACST-LDGQIHFWDPLNGEL  553 (860)
Q Consensus       495 ~~---~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~  553 (860)
                      |-   .++.+-+||..+-+...  ........|.---|.||.++++.++ .|+.|+.|.+.+..+
T Consensus       234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P  298 (472)
T KOG0303|consen  234 GFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP  298 (472)
T ss_pred             ccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence            43   47889999987655433  3335667788888999999886654 589999999977653

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=1.1e-15  Score=145.62  Aligned_cols=196  Identities=30%  Similarity=0.436  Sum_probs=158.0

Q ss_pred             EEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeec
Q 038577          310 TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTE  389 (860)
Q Consensus       310 ~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  389 (860)
                      ..++|+.+|..+++++.+ |.+++|++.+...+.....|...|.++.|+|||+.|++.+.| ..+||+.+++..+.....
T Consensus       148 k~vaf~~~gs~latgg~d-g~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTD-GTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeecccc-ceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            789999999999999887 999999999988888888999999999999999999999999 999999999977766542


Q ss_pred             --CCCceEEEEEeeCC-----CEEEEEeCCCcEEEEEcccccee---eEe-eCCCCCcEEEEEECCCCCEEEEEecCCCe
Q 038577          390 --HTNAVTALHFMANN-----HSLLSASLDGTVRAWDLFRYRNF---RTF-TTPSSRQFVSLASDQSGEVICAGTLDSFE  458 (860)
Q Consensus       390 --~~~~v~~i~~~~~~-----~~l~s~~~dg~i~~wd~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  458 (860)
                        .......+.|+.++     ..++....-+.|+.|++...+.-   +.. .......+.+++++++|+++++|+.+| .
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG-s  304 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG-S  304 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC-c
Confidence              23345677787766     23333445566777776543321   111 112233789999999999999999998 9


Q ss_pred             EEEEECCCCceEEEe-cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 038577          459 IFVWSMKTGRLLDIL-SGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFE  508 (860)
Q Consensus       459 i~v~d~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~  508 (860)
                      |-+++..+.+.++.. +.|...|+.+.|+||.+++++.+.|.+..+..+.-
T Consensus       305 Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  305 VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            999999988777655 57999999999999999999999999999887754

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.72  E-value=6.8e-14  Score=148.61  Aligned_cols=223  Identities=18%  Similarity=0.245  Sum_probs=172.4

Q ss_pred             CEEEeeeCCeEEEEECCCCcEE------eeccCCc----------cCeeEE-------------------------EEcC
Q 038577           24 TKLISPVGNRVSVTDLIKSKTV------TLPVESS----------SNICRI-------------------------AVSP   62 (860)
Q Consensus        24 ~~l~~~~~~~i~v~d~~~~~~~------~~~~~h~----------~~v~~v-------------------------a~sp   62 (860)
                      .+|.++.+..|.+||+..+...      .....|.          .-|++.                         .+.-
T Consensus        18 ~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~~~~~~s~wi~g~~l~~   97 (967)
T KOG0974|consen   18 DYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEASNQIIERFSDWIFGAKLFE   97 (967)
T ss_pred             ceeeecCCCceEEeeCCchhHhhhhhhhcccccccccccceeccceEEEEEeecceeecchhhhhhhhccccccccchhh
Confidence            6889999999999999887642      1122341          012222                         2223


Q ss_pred             CCCEEEEEcCCCcEEEEEcccCeEEEEeecCCce-----eEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEE
Q 038577           63 DGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPV-----NAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRT  136 (860)
Q Consensus        63 dg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v-----~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~  136 (860)
                      +.+.++.+..++.+.+||...+..+..+.+....     .-+-++++.-++++| .-+.|.+|++...+.       -..
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~-------p~~  170 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK-------PIR  170 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC-------cce
Confidence            4467788888899999999999888888755443     234568888899998 779999999984443       226


Q ss_pred             eeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCc
Q 038577          137 LADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDC  216 (860)
Q Consensus       137 ~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg  216 (860)
                      +.+|.+.|..+.|+-||+++++.+.|+++|+|++++. +.    .....-+|...|+.++|.|+       ++++++.|.
T Consensus       171 l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~-~~----~~~~~fgHsaRvw~~~~~~n-------~i~t~gedc  238 (967)
T KOG0974|consen  171 LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSR-EV----LGCTGFGHSARVWACCFLPN-------RIITVGEDC  238 (967)
T ss_pred             ecccCCceEEEEEccCCcEEEEEecCcceeeeecccc-cc----cCcccccccceeEEEEeccc-------eeEEeccce
Confidence            8999999999999999999999999999999999998 21    23477899999999999998       699999999


Q ss_pred             cEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccC-CCCceEEEEecCCCCEEEEEEcCCeEEEEECC
Q 038577          217 YMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQ-APSKVTACDYHRGLDMVVVGFSNGVFGLYQMP  294 (860)
Q Consensus       217 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~  294 (860)
                      +.++|+.+..+                        |.     .+.+ ....+..++..++....++++.||.+++|++.
T Consensus       239 tcrvW~~~~~~------------------------l~-----~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  239 TCRVWGVNGTQ------------------------LE-----VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             EEEEEecccce------------------------eh-----hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence            99999766532                        22     2222 33568899999999999999999999999875

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.72  E-value=4e-15  Score=136.22  Aligned_cols=232  Identities=19%  Similarity=0.228  Sum_probs=183.7

Q ss_pred             EeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce---EEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 038577          302 LSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES---YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTV  378 (860)
Q Consensus       302 ~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  378 (860)
                      +.....+|++.+|++|+..++++... ..+.||......   ...++..|...|++++|+|..+.|++++.|..-++|..
T Consensus         6 ~~~~~~pitchAwn~drt~iAv~~~~-~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~   84 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRTQIAVSPNN-HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             eeeccCceeeeeecCCCceEEeccCC-ceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence            33445789999999999999998776 899999887654   56677889999999999999999999999999999998


Q ss_pred             CCC---eeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcccccee---eEeeCCCCCcEEEEEECCCCCEEEEE
Q 038577          379 SSG---FCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNF---RTFTTPSSRQFVSLASDQSGEVICAG  452 (860)
Q Consensus       379 ~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~  452 (860)
                      ..+   ++...+..++...+++.|+|.++.+++|+....|.+|-++....-   +.+..+....+.++.+.|++-++++|
T Consensus        85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG  164 (361)
T KOG1523|consen   85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG  164 (361)
T ss_pred             CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence            433   445566678999999999999999999999999999987654432   33455666789999999999999999


Q ss_pred             ecCCCeEEEEECC-----C-------------CceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcc-ee
Q 038577          453 TLDSFEIFVWSMK-----T-------------GRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKG-SV  513 (860)
Q Consensus       453 ~~~~~~i~v~d~~-----~-------------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~  513 (860)
                      +.|+ ..++|..-     .             |+++..+....+.|..+.|+|+|..|+-.+.|..+.+-|...... ..
T Consensus       165 s~D~-k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~  243 (361)
T KOG1523|consen  165 STDG-KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQ  243 (361)
T ss_pred             ccCc-ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhcc
Confidence            9998 78877532     1             233444445678899999999999999999999999999876652 22


Q ss_pred             EEcccCCCeEEEEEeeCCCEEE
Q 038577          514 ESFPHTHDVLTVVYRPDGRQLA  535 (860)
Q Consensus       514 ~~~~~~~~v~~~~~s~~~~~l~  535 (860)
                      ......-+..++.|-.+...++
T Consensus       244 ~~~~~~lP~ls~~~ise~~vv~  265 (361)
T KOG1523|consen  244 SVATAQLPLLSVSWISENSVVA  265 (361)
T ss_pred             chhhccCCceeeEeecCCceee
Confidence            2223336778888876554333

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=1.4e-15  Score=161.56  Aligned_cols=234  Identities=16%  Similarity=0.163  Sum_probs=169.5

Q ss_pred             CCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccC--CcEEEEEccCceEE--EEecCcccCeEEEEEcCC
Q 038577          285 NGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKL--GQLLVWEWRSESYI--LKQQGHYFDVNCLAYSPD  360 (860)
Q Consensus       285 ~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~--g~i~v~d~~~~~~~--~~~~~~~~~v~~~~~s~~  360 (860)
                      +..|.+||..... .+.+..+...+....|+|||+.+++++.++  ..|++||+.++...  ..+.+|   ...++|+||
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD  258 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD  258 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence            4689999985444 556666777899999999999999887543  47999999887543  223333   446899999


Q ss_pred             CCEEEEEe-CCCcEEEE--ECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEe-CCCcEEEEEccccceeeEeeCCCCCc
Q 038577          361 SQLLATGA-DDNKVKVW--TVSSGFCFVTFTEHTNAVTALHFMANNHSLLSAS-LDGTVRAWDLFRYRNFRTFTTPSSRQ  436 (860)
Q Consensus       361 ~~~l~~~~-~dg~i~iw--d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~~  436 (860)
                      |+.|+.+. .+|.+.+|  |+.++. ...+..+...+....|+|||+.++.++ .+|...+|++............. . 
T Consensus       259 G~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~-~-  335 (429)
T PRK01742        259 GSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGR-G-  335 (429)
T ss_pred             CCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCC-C-
Confidence            99888765 57766555  665554 445566777788999999999877554 57888888875432222222221 1 


Q ss_pred             EEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcc--CCcceeE
Q 038577          437 FVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVF--EGKGSVE  514 (860)
Q Consensus       437 ~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~--~~~~~~~  514 (860)
                       ....++|+|+.+++.+.+  .+.+||+.+++.......+  ....+.|+|||++|++++.++.+.+|++.  ++.....
T Consensus       336 -~~~~~SpDG~~ia~~~~~--~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~  410 (429)
T PRK01742        336 -YSAQISADGKTLVMINGD--NVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR  410 (429)
T ss_pred             -CCccCCCCCCEEEEEcCC--CEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence             356799999999888775  4777999988765433322  34567899999999999999988888763  4555666


Q ss_pred             EcccCCCeEEEEEeeC
Q 038577          515 SFPHTHDVLTVVYRPD  530 (860)
Q Consensus       515 ~~~~~~~v~~~~~s~~  530 (860)
                      +..|.+.+...+|+|-
T Consensus       411 l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        411 LPGSDGQVKFPAWSPY  426 (429)
T ss_pred             ccCCCCCCCCcccCCC
Confidence            6678888899999984

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=2.7e-15  Score=158.70  Aligned_cols=232  Identities=18%  Similarity=0.147  Sum_probs=164.0

Q ss_pred             eEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcC---CCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEE
Q 038577           33 RVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDE---NQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIA  109 (860)
Q Consensus        33 ~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~---d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la  109 (860)
                      .|.++|........+. .+...+.+.+|||||+.||+.+.   +..+.+|++.+++........+.+..++|||||+.|+
T Consensus       180 ~l~~~d~dg~~~~~lt-~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La  258 (429)
T PRK03629        180 ELRVSDYDGYNQFVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA  258 (429)
T ss_pred             eEEEEcCCCCCCEEee-cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEE
Confidence            6999999877665554 46678999999999999997643   4579999999887655444556677899999999998


Q ss_pred             EE--eC--CeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecC-CeEEEEe--ecccccCcccccc
Q 038577          110 VG--TG--KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKD-LAVRLFY--VKEKLKGIHTNKP  182 (860)
Q Consensus       110 ~~--~~--~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d-g~v~vwd--~~~~~~~~~~~~~  182 (860)
                      ..  .+  ..|++||+.+++        ...+..+...+....|+|||+.|+..+.+ +...+|.  +.++       ..
T Consensus       259 ~~~~~~g~~~I~~~d~~tg~--------~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g-------~~  323 (429)
T PRK03629        259 FALSKTGSLNLYVMDLASGQ--------IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG-------AP  323 (429)
T ss_pred             EEEcCCCCcEEEEEECCCCC--------EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC-------Ce
Confidence            76  22  369999998875        34455555678899999999988877654 4555554  4443       22


Q ss_pred             eEeecCCCcEEEEEEccCCCCCccceEEEEcCC---ccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecc
Q 038577          183 FLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARD---CYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDD  259 (860)
Q Consensus       183 ~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (860)
                      ..+..+........|+|||+     +++..+.+   ..+.+||+.++..                        ....   
T Consensus       324 ~~lt~~~~~~~~~~~SpDG~-----~Ia~~~~~~g~~~I~~~dl~~g~~------------------------~~Lt---  371 (429)
T PRK03629        324 QRITWEGSQNQDADVSSDGK-----FMVMVSSNGGQQHIAKQDLATGGV------------------------QVLT---  371 (429)
T ss_pred             EEeecCCCCccCEEECCCCC-----EEEEEEccCCCceEEEEECCCCCe------------------------EEeC---
Confidence            33444444566789999998     78776543   3577888776432                        1010   


Q ss_pred             ccCCCCceEEEEecCCCCEEEEEEcCCe---EEEEECCCceeEEEEeecCceeEEEEEee
Q 038577          260 FSQAPSKVTACDYHRGLDMVVVGFSNGV---FGLYQMPDFVCIHLLSISREKITTAVFNE  316 (860)
Q Consensus       260 ~~~~~~~v~~~~~~~~~~~l~~~~~~g~---i~~~~~~~~~~~~~~~~~~~~i~~~~~s~  316 (860)
                        . ........|+|||+.++..+.++.   +.++++ ++.....+..+.+.+...+|+|
T Consensus       372 --~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        372 --D-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             --C-CCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence              0 112235679999999998887754   667777 5666666766777788888876

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.71  E-value=9.2e-14  Score=137.43  Aligned_cols=366  Identities=16%  Similarity=0.165  Sum_probs=229.6

Q ss_pred             EEeeeCCeEEEEECCCCcEEeeccCC---ccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEEC
Q 038577           26 LISPVGNRVSVTDLIKSKTVTLPVES---SSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFS  102 (860)
Q Consensus        26 l~~~~~~~i~v~d~~~~~~~~~~~~h---~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fs  102 (860)
                      +++-+...+.+|+....+......++   .......++|++|+++|.+. +..+.|++..++..+.+.... .+.++.||
T Consensus         5 ~aVRsSe~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~-~~~~L~fS   82 (566)
T KOG2315|consen    5 YAVRSSEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK-KTYDLLFS   82 (566)
T ss_pred             EEEEccceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc-eeeeeeec
Confidence            33444456889988765543333344   34467889999999999876 568999999988766555545 89999999


Q ss_pred             CCCCEEEEE-----------eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeec
Q 038577          103 PNGKYIAVG-----------TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVK  171 (860)
Q Consensus       103 pdg~~la~~-----------~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~  171 (860)
                      |.|.+|.+-           +.-.+.+|+++++..       ...+......-+++.|++|..+.|-- ..+.+.+|+..
T Consensus        83 P~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~-------~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~  154 (566)
T KOG2315|consen   83 PKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQ-------RSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLG  154 (566)
T ss_pred             ccccccccccccccccCCCCCCCceeeeeecccee-------hhheehhhhcCcccccccchhhhhhh-hcceEEEEecC
Confidence            999999874           123677999998432       12222222222689999998654432 34689999987


Q ss_pred             ccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEE-----EcCCccEEEeeecCCCCCCccccCCCCCCCCCCCc
Q 038577          172 EKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYT-----IARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPE  246 (860)
Q Consensus       172 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s-----~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~  246 (860)
                      ..       ....-.-|...|..+.++|.+...   .+++     .|.-+.+++|......                   
T Consensus       155 ~f-------~~~~~kl~~~~i~~f~lSpgp~~~---~vAvyvPe~kGaPa~vri~~~~~~~-------------------  205 (566)
T KOG2315|consen  155 SF-------KTIQHKLSVSGITMLSLSPGPEPP---FVAVYVPEKKGAPASVRIYKYPEEG-------------------  205 (566)
T ss_pred             Cc-------cceeeeeeccceeeEEecCCCCCc---eEEEEccCCCCCCcEEEEecccccc-------------------
Confidence            74       233334457778888888875420   2221     1222344444332100                   


Q ss_pred             ceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEc
Q 038577          247 RRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCA  326 (860)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  326 (860)
                                      ....+.+=.|..         .|.                       ..+.|++-|..|++...
T Consensus       206 ----------------~~~~~a~ksFFk---------adk-----------------------vqm~WN~~gt~LLvLas  237 (566)
T KOG2315|consen  206 ----------------QHQPVANKSFFK---------ADK-----------------------VQMKWNKLGTALLVLAS  237 (566)
T ss_pred             ----------------ccchhhhccccc---------cce-----------------------eEEEeccCCceEEEEEE
Confidence                            000000000100         111                       22333333333222111


Q ss_pred             -----------cCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEE--EeCCCcEEEEECCCCeeEEEeecCCCc
Q 038577          327 -----------KLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLAT--GADDNKVKVWTVSSGFCFVTFTEHTNA  393 (860)
Q Consensus       327 -----------~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~  393 (860)
                                 ...++++++++.......+ ...++|.++.|+|+++.+++  |-.-..+.|||++ +..+..+  ..++
T Consensus       238 tdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egp  313 (566)
T KOG2315|consen  238 TDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGP  313 (566)
T ss_pred             EeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCC
Confidence                       1256777777744444333 34789999999999987765  4456789999975 5555555  4677


Q ss_pred             eEEEEEeeCCCEEEEEeC---CCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC-----CeEEEEECC
Q 038577          394 VTALHFMANNHSLLSASL---DGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS-----FEIFVWSMK  465 (860)
Q Consensus       394 v~~i~~~~~~~~l~s~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~i~v~d~~  465 (860)
                      -.++.|+|.|++++.+|-   .|.+-+||+.+.+.+..+....   .+-+.|+|||.++++++...     +.++||+..
T Consensus       314 RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~---tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  314 RNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN---TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             ccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC---ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            789999999999998875   4789999999988877776554   47789999999999987641     268888865


Q ss_pred             CCceEEEecCcccCeEEEEEcC
Q 038577          466 TGRLLDILSGHEGPVHGLVFSP  487 (860)
Q Consensus       466 ~~~~~~~~~~h~~~v~~l~~s~  487 (860)
                       |..+....- ......+.|-|
T Consensus       391 -G~~l~~~~f-~sEL~qv~W~P  410 (566)
T KOG2315|consen  391 -GSLLHEKMF-KSELLQVEWRP  410 (566)
T ss_pred             -Cceeehhhh-hHhHhheeeee
Confidence             554433221 11456666665

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.71  E-value=3.3e-17  Score=156.99  Aligned_cols=274  Identities=18%  Similarity=0.281  Sum_probs=218.5

Q ss_pred             EeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 038577          302 LSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSG  381 (860)
Q Consensus       302 ~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  381 (860)
                      +....-....+.++.+|+.++.++.. |.+..+|+.++.....+.. ...|..+.|-.+.+++|++-. ..++||| ..|
T Consensus       125 L~l~eFGPY~~~ytrnGrhlllgGrK-GHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK-~y~yvYD-~~G  200 (545)
T KOG1272|consen  125 LSLPEFGPYHLDYTRNGRHLLLGGRK-GHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQK-KYVYVYD-NNG  200 (545)
T ss_pred             ccccccCCeeeeecCCccEEEecCCc-cceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhhh-ceEEEec-CCC
Confidence            33344456788999999999999988 9999999999999888754 345889999999888888754 6899999 457


Q ss_pred             eeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEE
Q 038577          382 FCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFV  461 (860)
Q Consensus       382 ~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v  461 (860)
                      ..+..+..| ..|..+.|.|..-.|++++..|.++.-|+.+++.+..+..... .+..++-+|-+..+.+|..+| +|.+
T Consensus       201 tElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G-~~~vm~qNP~NaVih~GhsnG-tVSl  277 (545)
T KOG1272|consen  201 TELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAG-RTDVMKQNPYNAVIHLGHSNG-TVSL  277 (545)
T ss_pred             cEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCC-ccchhhcCCccceEEEcCCCc-eEEe
Confidence            777777644 5688999999988899999999999999999998888776543 677888999999999999998 9999


Q ss_pred             EECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCC
Q 038577          462 WSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDG  541 (860)
Q Consensus       462 ~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  541 (860)
                      |.....+++..+-.|.++|.++++.++|+++||++.|..++|||++....+..... ..+...+++|..| +||. +...
T Consensus       278 WSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lLA~-~~G~  354 (545)
T KOG1272|consen  278 WSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LLAL-SYGD  354 (545)
T ss_pred             cCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc-ceee-ecCC
Confidence            99999999999999999999999999999999999999999999998875554444 5677888998655 3444 4455


Q ss_pred             eEEEEeC-CCCc--eeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCC
Q 038577          542 QIHFWDP-LNGE--LMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSK  603 (860)
Q Consensus       542 ~i~iwd~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg  603 (860)
                      .+.||.- -.+.  .-...-.|.                  -+.+|..+.|.|-...|-.|...|
T Consensus       355 ~v~iw~d~~~~s~~~~~pYm~H~------------------~~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  355 HVQIWKDALKGSGHGETPYMNHR------------------CGGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             eeeeehhhhcCCCCCCcchhhhc------------------cCcccccceeccHHHeeeccccCC
Confidence            7999952 2211  111111111                  123699999999998888887666

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=1.8e-14  Score=145.50  Aligned_cols=528  Identities=13%  Similarity=0.116  Sum_probs=338.0

Q ss_pred             CCceecccccccccCC--cEEEe-CCCEEEee-eCCeEEEEECCCCcE---------------EeeccCCccCeeEEEEc
Q 038577            1 MNYRFQNLLGAPYRGG--NAVLS-QNTKLISP-VGNRVSVTDLIKSKT---------------VTLPVESSSNICRIAVS   61 (860)
Q Consensus         1 ~~~~~~~~~g~~~~~~--~~~~s-dg~~l~~~-~~~~i~v~d~~~~~~---------------~~~~~~h~~~v~~va~s   61 (860)
                      |.+..+..+|.+.++.  .+.|. ...+||+| .+|.+.+..+.+...               ...+.||...|.-+.|.
T Consensus         1 Mfvylskki~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWN   80 (1189)
T KOG2041|consen    1 MFVYLSKKIGIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWN   80 (1189)
T ss_pred             CceEeecccCCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEec
Confidence            4556666677777655  47777 88899986 468888887765332               23456999999999999


Q ss_pred             CCCCEEEEEcCCCcEEEEEcccCeEEEEee---cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEe
Q 038577           62 PDGTFLLTVDENQRCHFINLHCHVVLHRVR---FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTL  137 (860)
Q Consensus        62 pdg~~la~~~~d~~i~vwd~~~~~~~~~~~---~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~  137 (860)
                      .+.+.|-+.+.+|-|.||=+-.|.-...+.   .++-|.+++|..||..|+.. .||.|.|=.+++.+--      -..+
T Consensus        81 e~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIw------gKeL  154 (1189)
T KOG2041|consen   81 ENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIW------GKEL  154 (1189)
T ss_pred             cccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceec------chhc
Confidence            999999999999999999887765433222   46779999999999999988 8999888777765420      1112


Q ss_pred             eccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccC-cccccceE----eecCCCcEEEEEEc--------cCCCCC
Q 038577          138 ADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKG-IHTNKPFL----LLGHRDSVVGCFFS--------VDKKTD  204 (860)
Q Consensus       138 ~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~-~~~~~~~~----~~~h~~~i~~~~~~--------~~~~~~  204 (860)
                      .+.  ....+.|++|.+.++.+-.+|...++|.+..... +...+...    +......|-.+.|.        ||..  
T Consensus       155 kg~--~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP--  230 (1189)
T KOG2041|consen  155 KGQ--LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP--  230 (1189)
T ss_pred             chh--eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC--
Confidence            221  2346889999999888888999999998765211 00011111    11122234455553        3444  


Q ss_pred             ccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEc
Q 038577          205 KVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFS  284 (860)
Q Consensus       205 ~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  284 (860)
                         .++.+-.+|.+.+-.-.....                             ......+-.+..+.|+++|..|++++.
T Consensus       231 ---~lavcy~nGr~QiMR~eND~~-----------------------------Pvv~dtgm~~vgakWnh~G~vLAvcG~  278 (1189)
T KOG2041|consen  231 ---RLAVCYANGRMQIMRSENDPE-----------------------------PVVVDTGMKIVGAKWNHNGAVLAVCGN  278 (1189)
T ss_pred             ---EEEEEEcCceehhhhhcCCCC-----------------------------CeEEecccEeecceecCCCcEEEEccC
Confidence               899999998887765544322                             111122346888999999999998776


Q ss_pred             C---------CeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEE
Q 038577          285 N---------GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCL  355 (860)
Q Consensus       285 ~---------g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~  355 (860)
                      +         +.|.+|.. -|....+++.+...|++++|-..|-.++.+..  +.|++=+++..-.-..+.   ..|   
T Consensus       279 ~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Avd--sfiyfanIRP~ykWgy~e---~Tv---  349 (1189)
T KOG2041|consen  279 DSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAVD--SFIYFANIRPEYKWGYIE---ETV---  349 (1189)
T ss_pred             cccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEEec--ceEEEEeecccceEEEee---eEE---
Confidence            4         35666654 78888999999999999999988888877754  677776655432111110   001   


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccc-eeeEe-----
Q 038577          356 AYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYR-NFRTF-----  429 (860)
Q Consensus       356 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~-----  429 (860)
                      .|--.+.-    ...-.|.+||..+.+......   ....+++++.+.-.|+.-..|+.+.-++.-... ....+     
T Consensus       350 Vy~y~~~e----~p~y~i~Fwdtk~nek~vK~V---~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNS  422 (1189)
T KOG2041|consen  350 VYVYQKEE----LPQYGIMFWDTKTNEKTVKTV---THFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNS  422 (1189)
T ss_pred             EEEEccCC----CcceEEEEEecccChhhhhhh---cceeehheecccEEEEeccccCCCcchhhhhcccceEEEeeecc
Confidence            11000000    012357889987665433222   224466676666666666677766655321111 00000     


Q ss_pred             -eCC---CCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCce--------------------------------EEEe
Q 038577          430 -TTP---SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRL--------------------------------LDIL  473 (860)
Q Consensus       430 -~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~--------------------------------~~~~  473 (860)
                       ..+   .-..+.-.-..-++..+++++.+  .+++|.....+.                                ..++
T Consensus       423 IGT~lD~kytdirP~Fv~vn~~~vviAS~e--~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~  500 (1189)
T KOG2041|consen  423 IGTSLDYKYTDIRPKFVCVNGICVVIASEE--RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTL  500 (1189)
T ss_pred             cCCcCCCCcceeeeeEEEecceEEEEeccc--cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceee
Confidence             011   11112222233456677777776  577776432211                                1234


Q ss_pred             cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCC---C
Q 038577          474 SGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPL---N  550 (860)
Q Consensus       474 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~---~  550 (860)
                      .|...+|..++.+  .++|..+-..|.|.-|.+.+.. +......+..+.++...-+...+|.-.--|.+.+.|+.   +
T Consensus       501 ~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~-l~n~y~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~  577 (1189)
T KOG2041|consen  501 LGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVV-LTNSYPVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFD  577 (1189)
T ss_pred             ccCCCcceeeeec--ceEEEEEeccCceEEEEeccee-eeeccccCchheeEeeccCcchhhhhhhhceeeeeecccccC
Confidence            4556788888775  6788899999999999998764 55555667789999999899999999889999999886   4


Q ss_pred             CceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEEC
Q 038577          551 GELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV  610 (860)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~  610 (860)
                      |..+.-+.....                   ..|+.+.|..|...|++--+...+.|++-
T Consensus       578 g~ql~~~~~~er-------------------rDVWd~~Wa~dNp~llAlmeKtrmyifrg  618 (1189)
T KOG2041|consen  578 GDQLKLIYTSER-------------------RDVWDYEWAQDNPNLLALMEKTRMYIFRG  618 (1189)
T ss_pred             cceeeeeehhhh-------------------hhhhhhhhccCCchHHhhhhhceEEEecC
Confidence            444443322211                   24888888888776665555555666543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.70  E-value=1.8e-10  Score=130.92  Aligned_cols=476  Identities=13%  Similarity=0.124  Sum_probs=280.5

Q ss_pred             CccCeeEEEEcCCCCEEEEEcCCCcEEEE----EcccCeEEEEeecCCceeEEEECCCCCEEEEE-eCCeEEEEeCC---
Q 038577           51 SSSNICRIAVSPDGTFLLTVDENQRCHFI----NLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG-TGKLVQIWRSP---  122 (860)
Q Consensus        51 h~~~v~~va~spdg~~la~~~~d~~i~vw----d~~~~~~~~~~~~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~---  122 (860)
                      ....|.++.+-++...++.+..+|.|.+.    +..+...-..-.....|.+++||||+.+||.. +++.+.+..-.   
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~  153 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDP  153 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE
Confidence            44679999999999999999999999999    55544333323367899999999999999988 56677665321   


Q ss_pred             -------C---CC----------c--cc--ceeEE--------------EEEeeccCCCeEEEEEcCCCCeEEEeec---
Q 038577          123 -------G---FK----------K--EV--FAFEL--------------IRTLADCNDKVTALNWSPDSNYLLVGSK---  161 (860)
Q Consensus       123 -------~---~~----------~--~~--~~~~~--------------~~~~~~h~~~v~~l~~s~d~~~l~s~~~---  161 (860)
                             .   +.          +  ++  ...+.              ...+. +.+.-..++|-.||.++|+.+.   
T Consensus       154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~  232 (928)
T PF04762_consen  154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPE  232 (928)
T ss_pred             EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcC
Confidence                   0   00          0  00  00000              01122 3445678999999999998764   


Q ss_pred             ---CCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcC---CccEEEeeecCCCCCCccccC
Q 038577          162 ---DLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR---DCYMFSWGFSGNDGKIDETME  235 (860)
Q Consensus       162 ---dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~---dg~i~~w~~~~~~~~~~~~~~  235 (860)
                         -+.+|||+-+..       ...+-..-.+--..++|.|.|+     .|++...   ...|.+|.-++-..       
T Consensus       233 ~~~~R~iRVy~ReG~-------L~stSE~v~gLe~~l~WrPsG~-----lIA~~q~~~~~~~VvFfErNGLrh-------  293 (928)
T PF04762_consen  233 TGSRRVIRVYSREGE-------LQSTSEPVDGLEGALSWRPSGN-----LIASSQRLPDRHDVVFFERNGLRH-------  293 (928)
T ss_pred             CCceeEEEEECCCce-------EEeccccCCCccCCccCCCCCC-----EEEEEEEcCCCcEEEEEecCCcEe-------
Confidence               257999997733       2222222223334689999998     8887765   34677776555221       


Q ss_pred             CCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCcee--EEEEeecC-ceeEEE
Q 038577          236 DSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVC--IHLLSISR-EKITTA  312 (860)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~--~~~~~~~~-~~i~~~  312 (860)
                                    +.+.    ..+......|..+.|+++++.||+...+. |.+|...+..-  .+.+.... ..+..+
T Consensus       294 --------------geF~----l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~  354 (928)
T PF04762_consen  294 --------------GEFT----LRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFV  354 (928)
T ss_pred             --------------eeEe----cCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCce
Confidence                          1221    11234556789999999999999988666 99999877542  23343322 244558


Q ss_pred             EEeeCCCE-EEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCC-----eeEE
Q 038577          313 VFNELGNW-LVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQ-LLATGADDNKVKVWTVSSG-----FCFV  385 (860)
Q Consensus       313 ~~s~~~~~-l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~-----~~~~  385 (860)
                      .|+|.... +.+.+.. |.+..+++.-.....  .         ..+|+.. .+++.. ...+.+-.++..     -...
T Consensus       355 ~Wdpe~p~~L~v~t~~-g~~~~~~~~~~v~~s--~---------~~~~~D~g~vaVID-G~~lllTpf~~a~VPPPMs~~  421 (928)
T PF04762_consen  355 KWDPEKPLRLHVLTSN-GQYEIYDFAWDVSRS--P---------GSSPNDNGTVAVID-GNKLLLTPFRRAVVPPPMSSY  421 (928)
T ss_pred             EECCCCCCEEEEEecC-CcEEEEEEEEEEEec--C---------CCCccCceEEEEEe-CCeEEEecccccCCCchHhce
Confidence            99986544 4444443 666655532111000  0         0111111 222222 235555554432     2223


Q ss_pred             EeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcccccee--------eEeeC---------CCCCcEEEEEECCCCCE
Q 038577          386 TFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNF--------RTFTT---------PSSRQFVSLASDQSGEV  448 (860)
Q Consensus       386 ~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~--------~~~~~---------~~~~~~~~~~~~~~~~~  448 (860)
                      .+. -..+|.+++|++++..+++...||.+.+|........        ..+..         .....+..++|..+...
T Consensus       422 ~l~-~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (928)
T PF04762_consen  422 ELE-LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTL  500 (928)
T ss_pred             EEc-CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEE
Confidence            332 4578999999999988999999999999985432211        11111         12335677888777777


Q ss_pred             EEEEecC--CCeEEEEECCCCc---eEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeE
Q 038577          449 ICAGTLD--SFEIFVWSMKTGR---LLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVL  523 (860)
Q Consensus       449 l~~~~~~--~~~i~v~d~~~~~---~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  523 (860)
                      +++...+  ...+.+++....+   .......-.+.+..+...++...++.-..+|.+...+..........++....-.
T Consensus       501 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~  580 (928)
T PF04762_consen  501 LVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWM  580 (928)
T ss_pred             EEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCCCCcEE
Confidence            7766654  3478888875332   2333333455666666666655566667799888766555432222222222223


Q ss_pred             EEEEeeCCC---EEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEec
Q 038577          524 TVVYRPDGR---QLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGG  600 (860)
Q Consensus       524 ~~~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~  600 (860)
                      .+....+..   .++.-+..|.+++    +++.+.                          ..++++++  .+.+|+...
T Consensus       581 ~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la--------------------------~~~tSF~v--~~~~Ll~TT  628 (928)
T PF04762_consen  581 EVCQINGSEDKRVLFGLSSNGRLYA----NSRLLA--------------------------SNCTSFAV--TDSFLLFTT  628 (928)
T ss_pred             EEEEECCccceeEEEEECCCCEEEE----CCEEEe--------------------------cCCceEEE--EcCEEEEEe
Confidence            333333332   3333344555543    222222                          12566666  466787777


Q ss_pred             CCCeEEEEECC
Q 038577          601 SSKYICMYDVA  611 (860)
Q Consensus       601 ~dg~v~vwd~~  611 (860)
                      ....+++.++.
T Consensus       629 ~~h~l~fv~L~  639 (928)
T PF04762_consen  629 TQHTLKFVHLN  639 (928)
T ss_pred             cCceEEEEECc
Confidence            77888888887

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.70  E-value=6.1e-15  Score=132.91  Aligned_cols=289  Identities=13%  Similarity=0.211  Sum_probs=204.3

Q ss_pred             ccCeeEEEEc--CC-CCEEEEEcC----CCcEEEEEc--ccCeEEEE--eecCCceeEEEECCCC-----CEEEEEeCCe
Q 038577           52 SSNICRIAVS--PD-GTFLLTVDE----NQRCHFINL--HCHVVLHR--VRFKYPVNAILFSPNG-----KYIAVGTGKL  115 (860)
Q Consensus        52 ~~~v~~va~s--pd-g~~la~~~~----d~~i~vwd~--~~~~~~~~--~~~~~~v~~~~fspdg-----~~la~~~~~~  115 (860)
                      .-.+.+++||  |+ +.+||.|+.    .+.|.|..+  ++++.+..  +.|..+++.+-|.|+.     .+||+ .+..
T Consensus        44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLAT-s~D~  122 (364)
T KOG0290|consen   44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLAT-SSDF  122 (364)
T ss_pred             CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhc-ccCe
Confidence            3557788888  33 346888764    466777644  45666554  4599999999999987     35665 4668


Q ss_pred             EEEEeCCCCCcccceeEE--EEEeeccCCCeEEEEEcC-CCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcE
Q 038577          116 VQIWRSPGFKKEVFAFEL--IRTLADCNDKVTALNWSP-DSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSV  192 (860)
Q Consensus       116 i~iwd~~~~~~~~~~~~~--~~~~~~h~~~v~~l~~s~-d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i  192 (860)
                      +++|.+...+.......+  ..+-..+..++++..|+. |-+++.+.+-|-+..|||++++..+   .....+..|...|
T Consensus       123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~---~vkTQLIAHDKEV  199 (364)
T KOG0290|consen  123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSG---TVKTQLIAHDKEV  199 (364)
T ss_pred             EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecccc---ceeeEEEecCcce
Confidence            999998854321111000  112234567899999987 5588999999999999999987222   4567889999999


Q ss_pred             EEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEe
Q 038577          193 VGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDY  272 (860)
Q Consensus       193 ~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  272 (860)
                      ..++|...+..    .+++++.||.++++|+...+....                         ...-+....+...++|
T Consensus       200 ~DIaf~~~s~~----~FASvgaDGSvRmFDLR~leHSTI-------------------------IYE~p~~~~pLlRLsw  250 (364)
T KOG0290|consen  200 YDIAFLKGSRD----VFASVGADGSVRMFDLRSLEHSTI-------------------------IYEDPSPSTPLLRLSW  250 (364)
T ss_pred             eEEEeccCccc----eEEEecCCCcEEEEEecccccceE-------------------------EecCCCCCCcceeecc
Confidence            99999987654    899999999999999987543100                         0000111456777888


Q ss_pred             cCCC-CEEEE-EEcCCeEEEEECCCc-eeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceE------EE
Q 038577          273 HRGL-DMVVV-GFSNGVFGLYQMPDF-VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESY------IL  343 (860)
Q Consensus       273 ~~~~-~~l~~-~~~~g~i~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~------~~  343 (860)
                      ++.. +++|+ +-....|.+.|+... ..+..++.|...|..++|.|....-++++++|.+..+||+.....      +.
T Consensus       251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil  330 (364)
T KOG0290|consen  251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL  330 (364)
T ss_pred             CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence            8755 45554 344577899998754 566889999999999999999888888888889999999976432      11


Q ss_pred             EecCcccCeEEEEEcC-CCCEEEEEeCCCcEEE
Q 038577          344 KQQGHYFDVNCLAYSP-DSQLLATGADDNKVKV  375 (860)
Q Consensus       344 ~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i  375 (860)
                      .+ ...++|..+.|++ .+..++.+.. +.+.+
T Consensus       331 ay-~a~~EVNqi~Ws~~~~Dwiai~~~-kklei  361 (364)
T KOG0290|consen  331 AY-TAGGEVNQIQWSSSQPDWIAICFG-KKLEI  361 (364)
T ss_pred             hh-hccceeeeeeecccCCCEEEEEec-CeeeE
Confidence            12 2456799999996 4567776654 34444

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=2.3e-15  Score=139.92  Aligned_cols=252  Identities=18%  Similarity=0.269  Sum_probs=173.4

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEee-cCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcccc-----
Q 038577          350 FDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFT-EHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRY-----  423 (860)
Q Consensus       350 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~-----  423 (860)
                      ..+..++|++.-..++++..|-.|++|+-.+ .+...++ .....|++++|-|.+..-++.+..+.|.+|.....     
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r  177 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANR  177 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCccccccc
Confidence            4578899999777788999999999999766 3333333 34568999999997754444444567999987431     


Q ss_pred             -------ceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEe
Q 038577          424 -------RNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSS  496 (860)
Q Consensus       424 -------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~  496 (860)
                             .+.+.+..+....|+++.+.+||..+++++.+...|.+||..++..+....-..+.++-+.||||+.+|..++
T Consensus       178 ~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt  257 (445)
T KOG2139|consen  178 NIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAAT  257 (445)
T ss_pred             ccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEec
Confidence                   1233455666678999999999999999998888999999999887766544567889999999999999999


Q ss_pred             CCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCcccccccc--
Q 038577          497 WDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRS--  574 (860)
Q Consensus       497 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--  574 (860)
                      -|+..++|............-..+.|...+|+|+|++|+.+.. |.-++|.+.-...-..+.+..++.......+...  
T Consensus       258 ~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~t  336 (445)
T KOG2139|consen  258 CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVT  336 (445)
T ss_pred             ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhh
Confidence            9999999965444333344445569999999999998776653 3345555432221111111111000000000000  


Q ss_pred             --ccccCCCCcEEEEEEecCCCEEEEecCCC
Q 038577          575 --AANSSSGKCFTTLCYSADGSYILAGGSSK  603 (860)
Q Consensus       575 --~~~~~~~~~i~~l~~s~~g~~l~~~~~dg  603 (860)
                        .....-++++.+++|.|.|.||++.-..+
T Consensus       337 i~ag~~l~cgeaq~lawDpsGeyLav~fKg~  367 (445)
T KOG2139|consen  337 ICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ  367 (445)
T ss_pred             hhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence              01112256789999999999999875443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.70  E-value=3.4e-15  Score=157.56  Aligned_cols=286  Identities=17%  Similarity=0.226  Sum_probs=204.3

Q ss_pred             cEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEE
Q 038577          191 SVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTAC  270 (860)
Q Consensus       191 ~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  270 (860)
                      +...+.|+|-..     .++++.+...|++||.+.+.......                       ..  ......|+.+
T Consensus      1066 ~pk~~~~hpf~p-----~i~~ad~r~~i~vwd~e~~~~l~~F~-----------------------n~--~~~~t~Vs~l 1115 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP-----QIAAADDRERIRVWDWEKGRLLNGFD-----------------------NG--AFPDTRVSDL 1115 (1387)
T ss_pred             CCceeeecCCCc-----eeEEcCCcceEEEEecccCceecccc-----------------------CC--CCCCCcccee
Confidence            455677888777     89999988999999998764311000                       01  1234467777


Q ss_pred             EecC--CCCEEEEEEcCCeEEEEECC-C----ceeEEEEee-------cCceeEEEEEeeCCCEEEEEEccCCcEEEEEc
Q 038577          271 DYHR--GLDMVVVGFSNGVFGLYQMP-D----FVCIHLLSI-------SREKITTAVFNELGNWLVFGCAKLGQLLVWEW  336 (860)
Q Consensus       271 ~~~~--~~~~l~~~~~~g~i~~~~~~-~----~~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~  336 (860)
                      .+-.  |..++++++.||.|++|+-- +    .+.+.....       ..+.-.-+.|.....+|++++.- ..|+|||.
T Consensus      1116 ~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~-r~IRIWDa 1194 (1387)
T KOG1517|consen 1116 ELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDV-RSIRIWDA 1194 (1387)
T ss_pred             eeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCe-eEEEEEec
Confidence            7755  45678999999999999743 2    222222211       11122345666666667766654 89999999


Q ss_pred             cCceEEEEecC-cccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC---eeEEEeecCCCc--eEEEEEeeCCC-EEEE
Q 038577          337 RSESYILKQQG-HYFDVNCLAYSP-DSQLLATGADDNKVKVWTVSSG---FCFVTFTEHTNA--VTALHFMANNH-SLLS  408 (860)
Q Consensus       337 ~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~--v~~i~~~~~~~-~l~s  408 (860)
                      ........+.. ....|+++.-+. .|+.+++|..||.|++||.+..   ..+...+.|+..  |..+.+.+.|- .|++
T Consensus      1195 ~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvS 1274 (1387)
T KOG1517|consen 1195 HKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVS 1274 (1387)
T ss_pred             ccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceee
Confidence            98887776643 445567665443 4689999999999999998753   346677788887  99999988774 5999


Q ss_pred             EeCCCcEEEEEccccceeeEee--CCC--CCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC-------cc
Q 038577          409 ASLDGTVRAWDLFRYRNFRTFT--TPS--SRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG-------HE  477 (860)
Q Consensus       409 ~~~dg~i~~wd~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~-------h~  477 (860)
                      |+.||.|++||++.......+.  .+.  ....+++.+++....+|+|+. + .|.||++. |+.+..++.       ..
T Consensus      1275 gs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q-~ikIy~~~-G~~l~~~k~n~~F~~q~~ 1351 (1387)
T KOG1517|consen 1275 GSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-Q-LIKIYSLS-GEQLNIIKYNPGFMGQRI 1351 (1387)
T ss_pred             eccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-c-eEEEEecC-hhhhcccccCcccccCcC
Confidence            9999999999998753222222  211  234899999999999999998 4 89999987 443333322       24


Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 038577          478 GPVHGLVFSPTNATLASSSWDKTVRLWNVFEGK  510 (860)
Q Consensus       478 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~  510 (860)
                      +.+.|++|+|-.-++|+|+.|.+|.||......
T Consensus      1352 gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1352 GSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             CCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            678999999999999999999999999876653

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.69  E-value=1.8e-14  Score=131.99  Aligned_cols=235  Identities=14%  Similarity=0.247  Sum_probs=167.6

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCc--eEEEEEeeCCCEEE-EEeCC------CcEEEEEccc
Q 038577          352 VNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNA--VTALHFMANNHSLL-SASLD------GTVRAWDLFR  422 (860)
Q Consensus       352 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~i~~~~~~~~l~-s~~~d------g~i~~wd~~~  422 (860)
                      ..+++|+.|...+++|..+| .+||+.+.-+.......+.+.  +..+-|  ..++++ .||.+      ..+.+||=..
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~k   84 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDLK   84 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEeccc
Confidence            45599999999999988765 899998753332222222222  222323  233444 33333      3699999666


Q ss_pred             cceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECC-CCceEEEecCcccCeEEEEEcC--CCCEEEEEe-CC
Q 038577          423 YRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK-TGRLLDILSGHEGPVHGLVFSP--TNATLASSS-WD  498 (860)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~-~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~-~d  498 (860)
                      .+++.++...  .+|.++.+.++.  +++....  .|++|... ..+.++.+.....|=--++.+|  +..+||.-+ .-
T Consensus        85 ~~~i~el~f~--~~I~~V~l~r~r--iVvvl~~--~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~  158 (346)
T KOG2111|consen   85 ERCIIELSFN--SEIKAVKLRRDR--IVVVLEN--KIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT  158 (346)
T ss_pred             CcEEEEEEec--cceeeEEEcCCe--EEEEecC--eEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence            6666666544  467888887664  4444443  79999988 5566666654332322333444  445566544 46


Q ss_pred             CcEEEEEccCCcc--eeEEcccCCCeEEEEEeeCCCEEEEEeCCCe-EEEEeCCCCceeEEEecccccCCCccccccccc
Q 038577          499 KTVRLWNVFEGKG--SVESFPHTHDVLTVVYRPDGRQLACSTLDGQ-IHFWDPLNGELMYTIEGRRDISGGRLMTDRRSA  575 (860)
Q Consensus       499 g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  575 (860)
                      |.|+|-|+...+.  ......|.+.|.+++++-+|..+|+++..|+ |+|||..+|+++.+++...+.            
T Consensus       159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~------------  226 (346)
T KOG2111|consen  159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR------------  226 (346)
T ss_pred             ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch------------
Confidence            8999999987664  4667789999999999999999999999998 899999999999998754432            


Q ss_pred             cccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCc
Q 038577          576 ANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQ  613 (860)
Q Consensus       576 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~  613 (860)
                            ..|.+++||||+.+|+++++.|++.||.+...
T Consensus       227 ------A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  227 ------ADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             ------heEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence                  35999999999999999999999999998764

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.69  E-value=2.1e-13  Score=133.16  Aligned_cols=374  Identities=14%  Similarity=0.146  Sum_probs=242.0

Q ss_pred             eeeCCeEE-EEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCC
Q 038577           28 SPVGNRVS-VTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGK  106 (860)
Q Consensus        28 ~~~~~~i~-v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~  106 (860)
                      +-.+..|. +|+..+...........-++..+.+||.|++|++... ..|.+|.-.....+..+.|. .|..+.|||.++
T Consensus         7 ~~~s~~i~~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~~~~~~-~V~~~~fSP~~k   84 (561)
T COG5354           7 LDYSAVISVFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKAKLVRFRHP-DVKYLDFSPNEK   84 (561)
T ss_pred             eeccceEEEeecCccccccccccccCcchhheeecCcchheehhhc-cceEEccccchhheeeeecC-CceecccCcccc
Confidence            33444444 5666666665555336678899999999999998765 46899998887777777654 599999999999


Q ss_pred             EEEEE----------------eCCeEEEEeCCCCCcccceeEEEEEeeccCCC--eE-EEEEcCCCCeEEEeecCCeEEE
Q 038577          107 YIAVG----------------TGKLVQIWRSPGFKKEVFAFELIRTLADCNDK--VT-ALNWSPDSNYLLVGSKDLAVRL  167 (860)
Q Consensus       107 ~la~~----------------~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~--v~-~l~~s~d~~~l~s~~~dg~v~v  167 (860)
                      ||.+-                .++.+.+||..++.       ++..+.+...+  .+ -+.|+.|.+++|-... ..+.|
T Consensus        85 YL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~-------iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~-~sl~i  156 (561)
T COG5354          85 YLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGM-------IVFSFNGISQPYLGWPVLKFSIDDKYVARVVG-SSLYI  156 (561)
T ss_pred             eeeeeccCCccChhhccCCccccCceeEEeccCce-------eEeeccccCCcccccceeeeeecchhhhhhcc-CeEEE
Confidence            99985                22468999999987       46666665555  45 6889999888776533 47999


Q ss_pred             EeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcc
Q 038577          168 FYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPER  247 (860)
Q Consensus       168 wd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (860)
                      +++......   .....+.  ...|....|+|.++.            ..+..|-.+..                     
T Consensus       157 ~e~t~n~~~---~p~~~lr--~~gi~dFsisP~~n~------------~~la~~tPEk~---------------------  198 (561)
T COG5354         157 HEITDNIEE---HPFKNLR--PVGILDFSISPEGNH------------DELAYWTPEKL---------------------  198 (561)
T ss_pred             EecCCcccc---Cchhhcc--ccceeeEEecCCCCC------------ceEEEEccccC---------------------
Confidence            997322010   1111111  345666677776541            11344433221                     


Q ss_pred             eeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEcc
Q 038577          248 RVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK  327 (860)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~  327 (860)
                                                         ...+.+++|.++....+.+-....-.-..+.|.+.|+++++-...
T Consensus       199 -----------------------------------~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t  243 (561)
T COG5354         199 -----------------------------------NKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMT  243 (561)
T ss_pred             -----------------------------------CCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEE
Confidence                                               123344555554444433333332233445566666655442211


Q ss_pred             ----------CCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeeEEEeecCCCceE
Q 038577          328 ----------LGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGA--DDNKVKVWTVSSGFCFVTFTEHTNAVT  395 (860)
Q Consensus       328 ----------~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~  395 (860)
                                ...++++++......... ...++|...+|.|.++.+++.+  .+..+.++|++.. ....  .....=.
T Consensus       244 ~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rN  319 (561)
T COG5354         244 HTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRN  319 (561)
T ss_pred             eeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc-eEEe--cCCcccc
Confidence                      156778887754443332 5678899999999998877655  6778999998765 3322  2344556


Q ss_pred             EEEEeeCCCEEEEEeCC---CcEEEEEccccceee-EeeCCCCCcEEEEEECCCCCEEEEEecCC-----CeEEEEECCC
Q 038577          396 ALHFMANNHSLLSASLD---GTVRAWDLFRYRNFR-TFTTPSSRQFVSLASDQSGEVICAGTLDS-----FEIFVWSMKT  466 (860)
Q Consensus       396 ~i~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~i~v~d~~~  466 (860)
                      .+.|+|.+++++.++-|   |.+-+||........ .+....   ..-+.|+||+.++.+.....     ..+.+||+..
T Consensus       320 T~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n---~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g  396 (561)
T COG5354         320 TIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN---TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG  396 (561)
T ss_pred             cccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC---ceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence            78899999999998865   579999986654433 444332   35567999999998865422     2788999875


Q ss_pred             CceEEEecCcccCeEEEEEcCCCCEEEEEeCCC
Q 038577          467 GRLLDILSGHEGPVHGLVFSPTNATLASSSWDK  499 (860)
Q Consensus       467 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg  499 (860)
                      ....        ..+.+.|.|.+++.-+.+.+.
T Consensus       397 ~~~f--------el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         397 AKVF--------ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             chhh--------hhhhccccCCcccceeeccCC
Confidence            4432        456788999888777766554

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.68  E-value=2.8e-15  Score=146.64  Aligned_cols=236  Identities=19%  Similarity=0.223  Sum_probs=158.7

Q ss_pred             EEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEE----ecCcccCeEEEEE-----cCCCCEEEEEeCCCcEEEEECCC
Q 038577          310 TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILK----QQGHYFDVNCLAY-----SPDSQLLATGADDNKVKVWTVSS  380 (860)
Q Consensus       310 ~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~----~~~~~~~v~~~~~-----s~~~~~l~~~~~dg~i~iwd~~~  380 (860)
                      ....++-.|++|++.-.  ..+++|+.+.+.....    ..-......|=+|     .|.+--++.|-.-|.|.+.|...
T Consensus       127 ~~~~~~~~gd~lcFnvg--~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~  204 (636)
T KOG2394|consen  127 TNTNQSGKGDRLCFNVG--RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN  204 (636)
T ss_pred             eeccccCCCCEEEEecC--CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence            34444556677766655  5788888775332211    1111111223333     45666788888889999998765


Q ss_pred             CeeEEEe----ecCCCceEEEEEeeCC-CEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecC
Q 038577          381 GFCFVTF----TEHTNAVTALHFMANN-HSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLD  455 (860)
Q Consensus       381 ~~~~~~~----~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  455 (860)
                      .+..+.+    ......|+++.|-|.+ ..++.+-.+|.+.+||..-.       ...  .-.+...-+++..+++....
T Consensus       205 ~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-------~~~--t~p~~~~~k~~~~f~i~t~k  275 (636)
T KOG2394|consen  205 FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-------CGA--TAPSYQALKDGDQFAILTSK  275 (636)
T ss_pred             hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-------ccC--CCCcccccCCCCeeEEeeee
Confidence            2221111    1134789999999865 46667778999999987211       111  11122233445444433322


Q ss_pred             CCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEE
Q 038577          456 SFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLA  535 (860)
Q Consensus       456 ~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  535 (860)
                      +       ..+..++..+.--.+.|...+|+|||++||+.+.||.+||||..+.+.+......-+...|++|||||++++
T Consensus       276 s-------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIv  348 (636)
T KOG2394|consen  276 S-------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIV  348 (636)
T ss_pred             c-------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEE
Confidence            1       011234444444466899999999999999999999999999998876655556778899999999999999


Q ss_pred             EEeCCCeEEEEeCCCCceeEEEeccccc
Q 038577          536 CSTLDGQIHFWDPLNGELMYTIEGRRDI  563 (860)
Q Consensus       536 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~  563 (860)
                      +|++|..|.||.+..++.+..-++|+.+
T Consensus       349 tGGEDDLVtVwSf~erRVVARGqGHkSW  376 (636)
T KOG2394|consen  349 TGGEDDLVTVWSFEERRVVARGQGHKSW  376 (636)
T ss_pred             ecCCcceEEEEEeccceEEEeccccccc
Confidence            9999999999999999999999998875

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=5.6e-16  Score=149.66  Aligned_cols=295  Identities=16%  Similarity=0.190  Sum_probs=225.0

Q ss_pred             cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCC--CCeEEEeecCCeEEEE
Q 038577           92 FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPD--SNYLLVGSKDLAVRLF  168 (860)
Q Consensus        92 ~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~l~s~~~dg~v~vw  168 (860)
                      |.+.|..+.|...|..|+++ .|..|.+||+..+..      ...-..+|...|....|-|.  .+.+++++.||.|++=
T Consensus       141 H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~------~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s  214 (559)
T KOG1334|consen  141 HKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP------KLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS  214 (559)
T ss_pred             CCCccceeeecccCceeeccCccceEEeehhhccCc------ccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence            88999999999999999999 678999999998875      35556789988888889884  4779999999999998


Q ss_pred             eecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcce
Q 038577          169 YVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERR  248 (860)
Q Consensus       169 d~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (860)
                      .+......   .....+..|.++|..++.-|+...    .|++++.|+.+.-+|+..+........              
T Consensus       215 ~i~~t~~~---e~t~rl~~h~g~vhklav~p~sp~----~f~S~geD~~v~~~Dlr~~~pa~~~~c--------------  273 (559)
T KOG1334|consen  215 EILETGYV---ENTKRLAPHEGPVHKLAVEPDSPK----PFLSCGEDAVVFHIDLRQDVPAEKFVC--------------  273 (559)
T ss_pred             eeccccce---ecceecccccCccceeeecCCCCC----cccccccccceeeeeeccCCccceeee--------------
Confidence            77654122   335678889999999999998875    899999999999999987654211110              


Q ss_pred             eeeEEeeeeccccCCCCceEEEEecCCCC-EEEEEEcCCeEEEEECCCceeE------EE------EeecCceeEEEEEe
Q 038577          249 VKKWGLLRKDDFSQAPSKVTACDYHRGLD-MVVVGFSNGVFGLYQMPDFVCI------HL------LSISREKITTAVFN  315 (860)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~g~i~~~~~~~~~~~------~~------~~~~~~~i~~~~~s  315 (860)
                              +..-....-....++..|... .+++|+.+-.+++||.+.....      ..      .....-.|++++++
T Consensus       274 --------r~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ys  345 (559)
T KOG1334|consen  274 --------READEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYS  345 (559)
T ss_pred             --------eccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEec
Confidence                    000000112467888888765 7899999999999997643221      11      11223469999999


Q ss_pred             eCCCEEEEEEccCCcEEEEEccC--c----------eEEEE-ecCccc--CeEEEEE-cCCCCEEEEEeCCCcEEEEECC
Q 038577          316 ELGNWLVFGCAKLGQLLVWEWRS--E----------SYILK-QQGHYF--DVNCLAY-SPDSQLLATGADDNKVKVWTVS  379 (860)
Q Consensus       316 ~~~~~l~~~~~~~g~i~v~d~~~--~----------~~~~~-~~~~~~--~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~  379 (860)
                      .++.-++++..+ -.|+++.-.-  |          ..+.. +++|..  .|.++-| -|...++++|+.-|.|.||+-.
T Consensus       346 h~~sElLaSYnD-e~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~  424 (559)
T KOG1334|consen  346 HDGSELLASYND-EDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKK  424 (559)
T ss_pred             CCccceeeeecc-cceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecc
Confidence            888877777665 7788884322  2          22222 567754  4666664 6788899999999999999999


Q ss_pred             CCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccc
Q 038577          380 SGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFR  422 (860)
Q Consensus       380 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~  422 (860)
                      +++.++.+.+...-|.|+.-+|--..|+++|-|..|+||...+
T Consensus       425 t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~  467 (559)
T KOG1334|consen  425 TGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT  467 (559)
T ss_pred             hhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCc
Confidence            9999998888888999999999999999999999999998643

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=2.2e-14  Score=153.01  Aligned_cols=231  Identities=12%  Similarity=0.051  Sum_probs=161.1

Q ss_pred             eEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcC---CCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEE
Q 038577           33 RVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDE---NQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIA  109 (860)
Q Consensus        33 ~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~---d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la  109 (860)
                      .|.++|..+.....+. .|...+.+.+|||||+.||+.+.   +..|.+||+.+++......+.+.+.+.+|||||+.|+
T Consensus       183 ~l~~~d~dg~~~~~lt-~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la  261 (435)
T PRK05137        183 RLAIMDQDGANVRYLT-DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVV  261 (435)
T ss_pred             EEEEECCCCCCcEEEe-cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEE
Confidence            6999998776665544 67888999999999999998764   4689999999987765555677888999999999887


Q ss_pred             EE--e--CCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeec-CC--eEEEEeecccccCcccccc
Q 038577          110 VG--T--GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSK-DL--AVRLFYVKEKLKGIHTNKP  182 (860)
Q Consensus       110 ~~--~--~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~-dg--~v~vwd~~~~~~~~~~~~~  182 (860)
                      ..  .  ...|++||+.++.        ...+..+.+......|+|||+.|+..+. +|  .|.+||+.++       ..
T Consensus       262 ~~~~~~g~~~Iy~~d~~~~~--------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~-------~~  326 (435)
T PRK05137        262 MSLSQGGNTDIYTMDLRSGT--------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS-------NP  326 (435)
T ss_pred             EEEecCCCceEEEEECCCCc--------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC-------Ce
Confidence            65  2  3468888988775        3556667777788999999999887764 33  5777776654       23


Q ss_pred             eEeecCCCcEEEEEEccCCCCCccceEEEEcCC---ccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecc
Q 038577          183 FLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARD---CYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDD  259 (860)
Q Consensus       183 ~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (860)
                      ..+..+...+....|+||++     .|+..+.+   ..+.+|++.++..                        ..     
T Consensus       327 ~~lt~~~~~~~~~~~SpdG~-----~ia~~~~~~~~~~i~~~d~~~~~~------------------------~~-----  372 (435)
T PRK05137        327 RRISFGGGRYSTPVWSPRGD-----LIAFTKQGGGQFSIGVMKPDGSGE------------------------RI-----  372 (435)
T ss_pred             EEeecCCCcccCeEECCCCC-----EEEEEEcCCCceEEEEEECCCCce------------------------Ee-----
Confidence            34444455667788999999     88776543   3577777654321                        00     


Q ss_pred             ccCCCCceEEEEecCCCCEEEEEEcC------CeEEEEECCCceeEEEEeecCceeEEEEEee
Q 038577          260 FSQAPSKVTACDYHRGLDMVVVGFSN------GVFGLYQMPDFVCIHLLSISREKITTAVFNE  316 (860)
Q Consensus       260 ~~~~~~~v~~~~~~~~~~~l~~~~~~------g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~  316 (860)
                      +. ....+....|+|+|+.++....+      ..+.++++..+.. ..+.. ...+...+|+|
T Consensus       373 lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~~~~~~p~Wsp  432 (435)
T PRK05137        373 LT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT-PGDASDPAWSP  432 (435)
T ss_pred             cc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccC-CCCccCcccCC
Confidence            00 11235678899999998876543      2577788755443 33332 33455556654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=1e-15  Score=147.95  Aligned_cols=309  Identities=15%  Similarity=0.172  Sum_probs=224.4

Q ss_pred             eeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee--cCCceeEEEECCCC--CEEEE-EeCCeEEEEe
Q 038577           46 TLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR--FKYPVNAILFSPNG--KYIAV-GTGKLVQIWR  120 (860)
Q Consensus        46 ~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~--~~~~v~~~~fspdg--~~la~-~~~~~i~iwd  120 (860)
                      ..+.+|.+.|..|.|...|..|++++.|..|.+||+..+.....+.  |...|-...|-|..  +-|++ +.||.+++=.
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~  215 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE  215 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence            4456899999999999999999999999999999999999888887  77788777787732  44444 4899999876


Q ss_pred             CCCCCcccceeEEEEEeeccCCCeEEEEEcCCC-CeEEEeecCCeEEEEeecccccCcccccceEeecCCC---cEEEEE
Q 038577          121 SPGFKKEVFAFELIRTLADCNDKVTALNWSPDS-NYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRD---SVVGCF  196 (860)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~---~i~~~~  196 (860)
                      +......    .-...+..|.++|..++.-|+. .-|.+++.|+.+.-.|+.... .  .........+..   ....++
T Consensus       216 i~~t~~~----e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~-p--a~~~~cr~~~~~~~v~L~~Ia  288 (559)
T KOG1334|consen  216 ILETGYV----ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDV-P--AEKFVCREADEKERVGLYTIA  288 (559)
T ss_pred             eccccce----ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCC-c--cceeeeeccCCccceeeeeEe
Confidence            6543321    1235677899999999999987 468899999999999988761 1  112222233333   456677


Q ss_pred             EccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCC
Q 038577          197 FSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGL  276 (860)
Q Consensus       197 ~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  276 (860)
                      ..|....    .+++++.|..+++||...-......              ..+.  ............-.|+|++|+.++
T Consensus       289 ~~P~nt~----~faVgG~dqf~RvYD~R~~~~e~~n--------------~~~~--~f~p~hl~~d~~v~ITgl~Ysh~~  348 (559)
T KOG1334|consen  289 VDPRNTN----EFAVGGSDQFARVYDQRRIDKEENN--------------GVLD--KFCPHHLVEDDPVNITGLVYSHDG  348 (559)
T ss_pred             cCCCCcc----ccccCChhhhhhhhcccchhhcccc--------------chhh--hcCCccccccCcccceeEEecCCc
Confidence            7776653    8999999999999998763221000              0000  011122223445679999999999


Q ss_pred             CEEEEEEcCCeEEEEECC--Cc----------eeE-EEEeecCc--eeEEEEEe-eCCCEEEEEEccCCcEEEEEccCce
Q 038577          277 DMVVVGFSNGVFGLYQMP--DF----------VCI-HLLSISRE--KITTAVFN-ELGNWLVFGCAKLGQLLVWEWRSES  340 (860)
Q Consensus       277 ~~l~~~~~~g~i~~~~~~--~~----------~~~-~~~~~~~~--~i~~~~~s-~~~~~l~~~~~~~g~i~v~d~~~~~  340 (860)
                      .-+++...|-.|++++-.  .+          ... +.+++|..  .|..+-|- |..++++++ ++.|.|.+|+-.+++
T Consensus       349 sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSG-SDCGhIFiW~K~t~e  427 (559)
T KOG1334|consen  349 SELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSG-SDCGHIFIWDKKTGE  427 (559)
T ss_pred             cceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEec-CccceEEEEecchhH
Confidence            889999999999999543  22          112 22556554  46667665 455555555 566999999999999


Q ss_pred             EEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 038577          341 YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGF  382 (860)
Q Consensus       341 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  382 (860)
                      .+..+.+...-|+|+.-+|--..||+.+-|..|+||...+.+
T Consensus       428 ii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  428 IIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             HHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence            888887766689999999999999999999999999875443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=2.7e-14  Score=151.04  Aligned_cols=233  Identities=14%  Similarity=0.048  Sum_probs=160.1

Q ss_pred             cEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEE----eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEc
Q 038577           75 RCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG----TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWS  150 (860)
Q Consensus        75 ~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  150 (860)
                      .|.+||...........+...+.+.+|||||+.||..    .+..|++|++.+++.        ..+....+.+..++|+
T Consensus       180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--------~~l~~~~~~~~~~~~S  251 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--------RQVASFPRHNGAPAFS  251 (429)
T ss_pred             eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--------EEccCCCCCcCCeEEC
Confidence            7899998876655555577789999999999999976    345899999988762        2333334445678999


Q ss_pred             CCCCeEEEe-ecCC--eEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcC-CccEEEee--ec
Q 038577          151 PDSNYLLVG-SKDL--AVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR-DCYMFSWG--FS  224 (860)
Q Consensus       151 ~d~~~l~s~-~~dg--~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~-dg~i~~w~--~~  224 (860)
                      |||+.|+.. +.+|  .|.+||++++       ....+..+...+....|+||++     .|+..+. ++...+|.  +.
T Consensus       252 PDG~~La~~~~~~g~~~I~~~d~~tg-------~~~~lt~~~~~~~~~~wSPDG~-----~I~f~s~~~g~~~Iy~~d~~  319 (429)
T PRK03629        252 PDGSKLAFALSKTGSLNLYVMDLASG-------QIRQVTDGRSNNTEPTWFPDSQ-----NLAYTSDQAGRPQVYKVNIN  319 (429)
T ss_pred             CCCCEEEEEEcCCCCcEEEEEECCCC-------CEEEccCCCCCcCceEECCCCC-----EEEEEeCCCCCceEEEEECC
Confidence            999988865 3444  5888888776       2334444555678899999998     7876665 45555554  43


Q ss_pred             CCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcC---CeEEEEECCCceeEEE
Q 038577          225 GNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSN---GVFGLYQMPDFVCIHL  301 (860)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---g~i~~~~~~~~~~~~~  301 (860)
                      ++..                             ..+...........|+|+|+.++....+   ..|.+||+.+++... 
T Consensus       320 ~g~~-----------------------------~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-  369 (429)
T PRK03629        320 GGAP-----------------------------QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-  369 (429)
T ss_pred             CCCe-----------------------------EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-
Confidence            3211                             0111122345578899999999876544   468889998776433 


Q ss_pred             EeecCceeEEEEEeeCCCEEEEEEccCC--cEEEEEccCceEEEEecCcccCeEEEEEcC
Q 038577          302 LSISREKITTAVFNELGNWLVFGCAKLG--QLLVWEWRSESYILKQQGHYFDVNCLAYSP  359 (860)
Q Consensus       302 ~~~~~~~i~~~~~s~~~~~l~~~~~~~g--~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~  359 (860)
                      +... .......|+|||+.+++++.+.+  .+.++++ ++.....+..|.+.+...+|+|
T Consensus       370 Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        370 LTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             eCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence            3322 23456789999999999987643  3666776 4444555667888888888987

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=1.4e-14  Score=154.36  Aligned_cols=232  Identities=16%  Similarity=0.101  Sum_probs=158.7

Q ss_pred             eEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcC---CCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEE
Q 038577           33 RVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDE---NQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIA  109 (860)
Q Consensus        33 ~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~---d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la  109 (860)
                      .|.+||..++....+. .+...+.+.+|||||+.||+++.   +..|.+||+.+++........+...+++|||||+.|+
T Consensus       185 ~l~i~D~~g~~~~~lt-~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~  263 (433)
T PRK04922        185 ALQVADSDGYNPQTIL-RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLA  263 (433)
T ss_pred             EEEEECCCCCCceEee-cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEE
Confidence            5999998766555544 56778999999999999998764   3479999999887655444566667899999999887


Q ss_pred             EE--e--CCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeec-CCe--EEEEeecccccCcccccc
Q 038577          110 VG--T--GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSK-DLA--VRLFYVKEKLKGIHTNKP  182 (860)
Q Consensus       110 ~~--~--~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~-dg~--v~vwd~~~~~~~~~~~~~  182 (860)
                      ..  .  ...|++||+.+++        ...+..+.......+|+|||+.|+.++. +|.  |.++++.++       ..
T Consensus       264 ~~~s~~g~~~Iy~~d~~~g~--------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g-------~~  328 (433)
T PRK04922        264 LTLSRDGNPEIYVMDLGSRQ--------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG-------SA  328 (433)
T ss_pred             EEEeCCCCceEEEEECCCCC--------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC-------Ce
Confidence            65  2  3479999998876        3455666666678999999998887764 445  555555444       12


Q ss_pred             eEeecCCCcEEEEEEccCCCCCccceEEEEcCCc---cEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecc
Q 038577          183 FLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDC---YMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDD  259 (860)
Q Consensus       183 ~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg---~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (860)
                      ..+..+.......+|+|||+     .|+..+.++   .|.+|++.++..                        .     .
T Consensus       329 ~~lt~~g~~~~~~~~SpDG~-----~Ia~~~~~~~~~~I~v~d~~~g~~------------------------~-----~  374 (433)
T PRK04922        329 ERLTFQGNYNARASVSPDGK-----KIAMVHGSGGQYRIAVMDLSTGSV------------------------R-----T  374 (433)
T ss_pred             EEeecCCCCccCEEECCCCC-----EEEEEECCCCceeEEEEECCCCCe------------------------E-----E
Confidence            22223334445689999999     887765433   588998876432                        0     0


Q ss_pred             ccCCCCceEEEEecCCCCEEEEEEcC---CeEEEEECCCceeEEEEeecCceeEEEEEee
Q 038577          260 FSQAPSKVTACDYHRGLDMVVVGFSN---GVFGLYQMPDFVCIHLLSISREKITTAVFNE  316 (860)
Q Consensus       260 ~~~~~~~v~~~~~~~~~~~l~~~~~~---g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~  316 (860)
                      +. +........|+|+|+.++....+   +.+.+++.. +.....+..+.+.+...+|+|
T Consensus       375 Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        375 LT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             CC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence            11 11123356899999998877653   467778874 444555554445566666665

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.66  E-value=1.4e-13  Score=134.24  Aligned_cols=351  Identities=15%  Similarity=0.159  Sum_probs=239.0

Q ss_pred             Cceeccccc-ccccCCcEEEe-CCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCC------
Q 038577            2 NYRFQNLLG-APYRGGNAVLS-QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDEN------   73 (860)
Q Consensus         2 ~~~~~~~~g-~~~~~~~~~~s-dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d------   73 (860)
                      +|...+.++ ..+...++++| .|++|++.....|.+|.-...-.+..+ .| ..|..+.|||.++||.+-+..      
T Consensus        21 s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~-~~-~~V~~~~fSP~~kYL~tw~~~pi~~pe   98 (561)
T COG5354          21 SEVIHTRFESENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRF-RH-PDVKYLDFSPNEKYLVTWSREPIIEPE   98 (561)
T ss_pred             cccccccccccCcchhheeecCcchheehhhccceEEccccchhheeee-ec-CCceecccCcccceeeeeccCCccChh
Confidence            455566666 55666789999 999999999999999998877644433 34 569999999999999986433      


Q ss_pred             ---------CcEEEEEcccCeEEEEeec-CCc--ee-EEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeecc
Q 038577           74 ---------QRCHFINLHCHVVLHRVRF-KYP--VN-AILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADC  140 (860)
Q Consensus        74 ---------~~i~vwd~~~~~~~~~~~~-~~~--v~-~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h  140 (860)
                               +.+.+||+.+|..+..+.. ..+  .. -+.|+-|.+|+|-.....+.|+++ ++.....++   +.+.  
T Consensus        99 ~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~---~~lr--  172 (561)
T COG5354          99 IEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPF---KNLR--  172 (561)
T ss_pred             hccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCch---hhcc--
Confidence                     3599999999999998872 222  33 689999999999888899999997 443222222   1221  


Q ss_pred             CCCeEEEEEcCCC--CeEEE-----eecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEc
Q 038577          141 NDKVTALNWSPDS--NYLLV-----GSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIA  213 (860)
Q Consensus       141 ~~~v~~l~~s~d~--~~l~s-----~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~  213 (860)
                      ...|....|+|.+  ..||.     .+.++++++|.+... .     ......-....=..+.|.+.|+     +++.--
T Consensus       173 ~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~-s-----~l~tk~lfk~~~~qLkW~~~g~-----~ll~l~  241 (561)
T COG5354         173 PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN-S-----VLVTKNLFKVSGVQLKWQVLGK-----YLLVLV  241 (561)
T ss_pred             ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC-C-----eeeeeeeEeecccEEEEecCCc-----eEEEEE
Confidence            3558888999964  33554     456789999998855 2     2222111122223466777776     444322


Q ss_pred             C-----------CccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEE
Q 038577          214 R-----------DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVG  282 (860)
Q Consensus       214 ~-----------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  282 (860)
                      .           ...+.++++.....                             .......++|...+|.|.++.+++.
T Consensus       242 ~t~~ksnKsyfgesnLyl~~~~e~~i-----------------------------~V~~~~~~pVhdf~W~p~S~~F~vi  292 (561)
T COG5354         242 MTHTKSNKSYFGESNLYLLRITERSI-----------------------------PVEKDLKDPVHDFTWEPLSSRFAVI  292 (561)
T ss_pred             EEeeecccceeccceEEEEeeccccc-----------------------------ceeccccccceeeeecccCCceeEE
Confidence            1           12345555443211                             0111346789999999999887754


Q ss_pred             --EcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEcc--CCcEEEEEccCceEEE-EecCcccCeEEEEE
Q 038577          283 --FSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK--LGQLLVWEWRSESYIL-KQQGHYFDVNCLAY  357 (860)
Q Consensus       283 --~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~--~g~i~v~d~~~~~~~~-~~~~~~~~v~~~~~  357 (860)
                        .....+.+++++.. .  .+......-..+.|+|.++++++++-+  .|.+.+||........ .+.+..  .+-+.|
T Consensus       293 ~g~~pa~~s~~~lr~N-l--~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~w  367 (561)
T COG5354         293 SGYMPASVSVFDLRGN-L--RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDW  367 (561)
T ss_pred             ecccccceeecccccc-e--EEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeec
Confidence              46788889998654 2  233445566778899999999997765  3889999988765544 454433  456789


Q ss_pred             cCCCCEEEEEeC------CCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCC
Q 038577          358 SPDSQLLATGAD------DNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDG  413 (860)
Q Consensus       358 s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg  413 (860)
                      +||++++.+...      |..|.+||+......        ..+.+.|.|.+++..+.+.+.
T Consensus       368 spd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         368 SPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             cCCceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCCcccceeeccCC
Confidence            999999887643      778999998643221        456788888887776666554

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.66  E-value=1.7e-11  Score=130.74  Aligned_cols=183  Identities=15%  Similarity=0.139  Sum_probs=145.9

Q ss_pred             CCCEEEeeeCCeEEEEECCCCcEEeeccCCccC-----eeEEEEcCCCCEEEEEcCCCcEEEEEccc-CeEEEEeecCCc
Q 038577           22 QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSN-----ICRIAVSPDGTFLLTVDENQRCHFINLHC-HVVLHRVRFKYP   95 (860)
Q Consensus        22 dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~-----v~~va~spdg~~la~~~~d~~i~vwd~~~-~~~~~~~~~~~~   95 (860)
                      +.+..+..+.+.+.+||...+...... .+...     ..-+-++++.-++++|+.-+.|++|+... ....+...|.+.
T Consensus        99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i-~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~  177 (967)
T KOG0974|consen   99 NKKIALVTSRNSLLIRDSKNSSVLSKI-QSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGS  177 (967)
T ss_pred             cceEEEEEcCceEEEEecccCceehhc-CCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCc
Confidence            444444456789999999988775544 33332     22345578888999999999999999873 333444559999


Q ss_pred             eeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccc
Q 038577           96 VNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKL  174 (860)
Q Consensus        96 v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~  174 (860)
                      |-++.|+-||+++++. .|.++++|++++.+.      +.....+|+.+|+.+.|.|.  ++++++.|.+.++|+.+.. 
T Consensus       178 iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~------~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~-  248 (967)
T KOG0974|consen  178 IFSIVTSLDGRYIASVSDDRSIRLWPIDSREV------LGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGT-  248 (967)
T ss_pred             eEEEEEccCCcEEEEEecCcceeeeecccccc------cCcccccccceeEEEEeccc--eeEEeccceEEEEEecccc-
Confidence            9999999999999999 789999999999875      23467799999999999998  8999999999999976654 


Q ss_pred             cCcccccceEeecCC-CcEEEEEEccCCCCCccceEEEEcCCccEEEeeecC
Q 038577          175 KGIHTNKPFLLLGHR-DSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSG  225 (860)
Q Consensus       175 ~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  225 (860)
                            ......+|. ..|+.++..++..     .+++++.|+.+++|++..
T Consensus       249 ------~l~~y~~h~g~~iw~~~~~~~~~-----~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  249 ------QLEVYDEHSGKGIWKIAVPIGVI-----IKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ------eehhhhhhhhcceeEEEEcCCce-----EEEeeccCcchhhhhhhc
Confidence                  233666664 5688999998888     999999999999999875

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=4.3e-14  Score=149.83  Aligned_cols=235  Identities=17%  Similarity=0.143  Sum_probs=157.2

Q ss_pred             CeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCC---CcEEEEEcccCeEEEEeecCCceeEEEECCCCCEE
Q 038577           32 NRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDEN---QRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYI  108 (860)
Q Consensus        32 ~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d---~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~l  108 (860)
                      ..|.++|........+. .+...+.+.+|||||+.||+.+.+   ..|.+||+.+++........+.+.+.+|||||+.|
T Consensus       176 ~~L~~~D~dG~~~~~l~-~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l  254 (427)
T PRK02889        176 YQLQISDADGQNAQSAL-SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTL  254 (427)
T ss_pred             cEEEEECCCCCCceEec-cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence            35888888655444444 677889999999999999987643   46999999998776554456677899999999998


Q ss_pred             EEE--eCCe--EEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeec-CCeEEEEeecccccCcccccce
Q 038577          109 AVG--TGKL--VQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSK-DLAVRLFYVKEKLKGIHTNKPF  183 (860)
Q Consensus       109 a~~--~~~~--i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~  183 (860)
                      +..  .++.  |+++|..++.        ...+..+.+......|+|||+.|+..+. +|...+|.++.. ..    ...
T Consensus       255 a~~~~~~g~~~Iy~~d~~~~~--------~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~-~g----~~~  321 (427)
T PRK02889        255 AVALSRDGNSQIYTVNADGSG--------LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS-GG----AAQ  321 (427)
T ss_pred             EEEEccCCCceEEEEECCCCC--------cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC-CC----ceE
Confidence            865  4554  5555555543        3455666666778899999998887654 467777776533 11    122


Q ss_pred             EeecCCCcEEEEEEccCCCCCccceEEEEcCCc---cEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccc
Q 038577          184 LLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDC---YMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDF  260 (860)
Q Consensus       184 ~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg---~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (860)
                      .+..+........|+|||+     +|+..+.++   .|.+|++.++...                            . +
T Consensus       322 ~lt~~g~~~~~~~~SpDG~-----~Ia~~s~~~g~~~I~v~d~~~g~~~----------------------------~-l  367 (427)
T PRK02889        322 RVTFTGSYNTSPRISPDGK-----LLAYISRVGGAFKLYVQDLATGQVT----------------------------A-L  367 (427)
T ss_pred             EEecCCCCcCceEECCCCC-----EEEEEEccCCcEEEEEEECCCCCeE----------------------------E-c
Confidence            2222233344678999999     888776554   6899998765320                            0 0


Q ss_pred             cCCCCceEEEEecCCCCEEEEEEcCC---eEEEEECCCceeEEEEeecCceeEEEEEee
Q 038577          261 SQAPSKVTACDYHRGLDMVVVGFSNG---VFGLYQMPDFVCIHLLSISREKITTAVFNE  316 (860)
Q Consensus       261 ~~~~~~v~~~~~~~~~~~l~~~~~~g---~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~  316 (860)
                      .. ........|+|+|+.|+....++   .+.+.+. ++.....+..+.+.+...+|+|
T Consensus       368 t~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp  424 (427)
T PRK02889        368 TD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGP  424 (427)
T ss_pred             cC-CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCC
Confidence            01 11235678999999998777553   3555566 4555555555555666667765

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.63  E-value=1.7e-15  Score=145.36  Aligned_cols=285  Identities=12%  Similarity=0.087  Sum_probs=221.7

Q ss_pred             ECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEeCCeEE
Q 038577           38 DLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQ  117 (860)
Q Consensus        38 d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~~~~i~  117 (860)
                      |+.+.....-+.--......+.++.+|++|+.++..|.+-..|+.+++....+.....|.++.|-.+.+++|++..+.++
T Consensus       115 di~sa~k~f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~y  194 (545)
T KOG1272|consen  115 DIASATKHFDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVY  194 (545)
T ss_pred             cHHhHHhhccccccccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEE
Confidence            33333333333223455678999999999999999999999999999999999989999999999999999999999999


Q ss_pred             EEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEE
Q 038577          118 IWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFF  197 (860)
Q Consensus       118 iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~  197 (860)
                      |||-.+-+        ++.+..| ..|..+.|.|..-+|++++..|.++.-|+..+      ..+..+....+.+..++-
T Consensus       195 vYD~~GtE--------lHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G------klVa~~~t~~G~~~vm~q  259 (545)
T KOG1272|consen  195 VYDNNGTE--------LHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTG------KLVASIRTGAGRTDVMKQ  259 (545)
T ss_pred             EecCCCcE--------Eeehhhc-CchhhhcccchhheeeecccCCceEEEeechh------hhhHHHHccCCccchhhc
Confidence            99987765        3445444 56899999999989999999999999999999      667777778888888998


Q ss_pred             ccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCC
Q 038577          198 SVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLD  277 (860)
Q Consensus       198 ~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  277 (860)
                      .|-+.     .+-+|...|+|.+|+....++                            ...+..|.++|.++++.++|.
T Consensus       260 NP~Na-----Vih~GhsnGtVSlWSP~skeP----------------------------LvKiLcH~g~V~siAv~~~G~  306 (545)
T KOG1272|consen  260 NPYNA-----VIHLGHSNGTVSLWSPNSKEP----------------------------LVKILCHRGPVSSIAVDRGGR  306 (545)
T ss_pred             CCccc-----eEEEcCCCceEEecCCCCcch----------------------------HHHHHhcCCCcceEEECCCCc
Confidence            99887     899999999999998877543                            233446888999999999999


Q ss_pred             EEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc-Cc--eEEEEe--cCcccCe
Q 038577          278 MVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR-SE--SYILKQ--QGHYFDV  352 (860)
Q Consensus       278 ~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~-~~--~~~~~~--~~~~~~v  352 (860)
                      ++++.+.|..+.|||+.....+.++.. ..+...+++|..|-. +++.+  ..+.+|.-. .+  .....+  ....+.|
T Consensus       307 YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglL-A~~~G--~~v~iw~d~~~~s~~~~~pYm~H~~~~~V  382 (545)
T KOG1272|consen  307 YMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLL-ALSYG--DHVQIWKDALKGSGHGETPYMNHRCGGPV  382 (545)
T ss_pred             EEeecccccceeEeeeccccccceeec-CCCccccccccccce-eeecC--CeeeeehhhhcCCCCCCcchhhhccCccc
Confidence            999999999999999999888777766 456777888866543 33333  578888522 21  111111  1123478


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEE
Q 038577          353 NCLAYSPDSQLLATGADDNKVK  374 (860)
Q Consensus       353 ~~~~~s~~~~~l~~~~~dg~i~  374 (860)
                      ..+.|.|-...|-+|...|.-.
T Consensus       383 ~~l~FcP~EDvLGIGH~~G~ts  404 (545)
T KOG1272|consen  383 EDLRFCPYEDVLGIGHAGGITS  404 (545)
T ss_pred             ccceeccHHHeeeccccCCcee
Confidence            8888888776666665554333

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.63  E-value=3.6e-14  Score=139.06  Aligned_cols=252  Identities=15%  Similarity=0.174  Sum_probs=177.9

Q ss_pred             ceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEE-----cCCCCeEEEeecCCeEEEEe
Q 038577           95 PVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNW-----SPDSNYLLVGSKDLAVRLFY  169 (860)
Q Consensus        95 ~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-----s~d~~~l~s~~~dg~v~vwd  169 (860)
                      .+....++-.|++|+..-...+++|+..++...-.+.  .+.+.. ....+|-+|     .|++--|+.|-.-|.|.+.|
T Consensus       125 ~~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi--~k~~y~-gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~id  201 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPI--DKREYK-GTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLID  201 (636)
T ss_pred             ceeeccccCCCCEEEEecCCeEEEEEccCcchhccch--hhhccc-CCCCceecccccccCCCCcceEEeeccCceEEec
Confidence            4556667778899999988999999998654322121  111111 112234444     45666678887888898888


Q ss_pred             ecccccCcccccc--eEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcc
Q 038577          170 VKEKLKGIHTNKP--FLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPER  247 (860)
Q Consensus       170 ~~~~~~~~~~~~~--~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (860)
                      .... +.   ...  ....-.+..++++.|.|.+..    .++.+-.+|.++++|..-...                   
T Consensus       202 p~~~-~~---sklfne~r~i~ktsvT~ikWvpg~~~----~Fl~a~~sGnlyly~~~~~~~-------------------  254 (636)
T KOG2394|consen  202 PINF-EV---SKLFNEERLINKSSVTCIKWVPGSDS----LFLVAHASGNLYLYDKEIVCG-------------------  254 (636)
T ss_pred             chhh-HH---HHhhhhcccccccceEEEEEEeCCCc----eEEEEEecCceEEeecccccc-------------------
Confidence            7653 11   111  111223478999999997764    777778899999998743111                   


Q ss_pred             eeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEcc
Q 038577          248 RVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK  327 (860)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~  327 (860)
                                       ..-.+....+++..+.+....+.      .+..++..+....+.|...+|+|||++|++.+.+
T Consensus       255 -----------------~t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqD  311 (636)
T KOG2394|consen  255 -----------------ATAPSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQD  311 (636)
T ss_pred             -----------------CCCCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEecC
Confidence                             00111222344555544332221      1224455555566789999999999999999877


Q ss_pred             CCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEe
Q 038577          328 LGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFM  400 (860)
Q Consensus       328 ~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~  400 (860)
                       |.++|+|..+.+.+...+.-.+...|++|||||++|++|++|--|.||.+..++.+..=.+|++.|..++|.
T Consensus       312 -GfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  312 -GFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             -ceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence             999999999988887777778889999999999999999999999999999999999999999999999998

>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=99.63  E-value=1.4e-15  Score=126.48  Aligned_cols=107  Identities=38%  Similarity=0.630  Sum_probs=101.7

Q ss_pred             CChHHHHHHhHhcCCCccchhcccCCHHHHHHHHHHHHhhhc--cCCChhhHHHHHHHHHHHHhhhhhhcccchhHHHHH
Q 038577          750 NEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLLE--SCPHLEFMLRWCQELCKTHGNTIQQNSRNLLPSLKS  827 (860)
Q Consensus       750 ~~~~~~~~~l~~~~~~~i~~~~~~l~~~~~~~ll~~l~~~l~--~~~~~~~~~~~l~~~l~~H~~~l~~~~~~~~~~l~~  827 (860)
                      ||.+++.++++++|+++|+.+++.||+.++..||++|..+++  +.+++|++..|++++|+.||++|++.+.++++.|..
T Consensus         1 Nd~~ll~~vl~~~~~~~I~~tv~~Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~~l~~~~~~~~~~L~~   80 (110)
T PF04003_consen    1 NDEELLLEVLERIPPSDIENTVRSLPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGSYLSSSSPELRPVLRS   80 (110)
T ss_pred             CHHHHHHHHHhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            678999999999999999999999999999999999999887  567999999999999999999999983499999999


Q ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHhhc
Q 038577          828 LQKSITRIHQDLADTCSSNEYMLQYLCSV  856 (860)
Q Consensus       828 l~~~~~~~~~~l~~~~~~~~~~l~~~~~~  856 (860)
                      |++.++++.+.+.++++.|.+.|+|+.+.
T Consensus        81 L~~~l~~~~~~l~~l~~~n~~~L~~l~~q  109 (110)
T PF04003_consen   81 LQKILRERLQNLSKLLDLNLGRLDYLLSQ  109 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence            99999999999999999999999999874

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.63  E-value=6.1e-12  Score=124.71  Aligned_cols=264  Identities=11%  Similarity=0.058  Sum_probs=182.5

Q ss_pred             CeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEc---------cCCcEEEEEccCceEEEEecCcc-------
Q 038577          286 GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCA---------KLGQLLVWEWRSESYILKQQGHY-------  349 (860)
Q Consensus       286 g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---------~~g~i~v~d~~~~~~~~~~~~~~-------  349 (860)
                      +.|.+.|..+++.+..+.....+-. + ++|||+.+.++..         ++..|.+||..+.+.+.++....       
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            8999999999999998887765543 4 9999999999998         78999999999999998875321       


Q ss_pred             cCeEEEEEcCCCCEEEEEe-C-CCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q 038577          350 FDVNCLAYSPDSQLLATGA-D-DNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR  427 (860)
Q Consensus       350 ~~v~~~~~s~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~  427 (860)
                      .....++++|||+++++.. . ++.|.+.|+.+++.+.++..           |++..++..+.++....          
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-----------p~~~~vy~t~e~~~~~~----------  163 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-----------PDCYHIFPTANDTFFMH----------  163 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-----------CCCcEEEEecCCccEEE----------
Confidence            2234789999999998766 3 68999999999998887764           45444444443332211          


Q ss_pred             EeeCCCCCcEEEEEECCCCCEEEEEecCCCe-----EEEEECCCCceEEEecCcccCeEEEEEcC-CCCEEEEEeCCCcE
Q 038577          428 TFTTPSSRQFVSLASDQSGEVICAGTLDSFE-----IFVWSMKTGRLLDILSGHEGPVHGLVFSP-TNATLASSSWDKTV  501 (860)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----i~v~d~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i  501 (860)
                                     +.||..+.+...+.+.     ..+++... .+  .   ...+    .|++ +|+++..... |+|
T Consensus       164 ---------------~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~-~~--v---~~rP----~~~~~dg~~~~vs~e-G~V  217 (352)
T TIGR02658       164 ---------------CRDGSLAKVGYGTKGNPKIKPTEVFHPED-EY--L---INHP----AYSNKSGRLVWPTYT-GKI  217 (352)
T ss_pred             ---------------eecCceEEEEecCCCceEEeeeeeecCCc-cc--c---ccCC----ceEcCCCcEEEEecC-CeE
Confidence                           1222222222222111     22222110 00  0   0112    4455 7777776665 999


Q ss_pred             EEEEccCCcc----eeEEcc--------cCCCeEEEEEeeCCCEEEEEe----------CCCeEEEEeCCCCceeEEEec
Q 038577          502 RLWNVFEGKG----SVESFP--------HTHDVLTVVYRPDGRQLACST----------LDGQIHFWDPLNGELMYTIEG  559 (860)
Q Consensus       502 ~iwd~~~~~~----~~~~~~--------~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~  559 (860)
                      .+.|+.....    ......        ..+...-++++|+++.+++..          ..+.|.++|..+++.+..+..
T Consensus       218 ~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v  297 (352)
T TIGR02658       218 FQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL  297 (352)
T ss_pred             EEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC
Confidence            9999644321    111111        233444599999999998853          224799999999999999886


Q ss_pred             ccccCCCccccccccccccCCCCcEEEEEEecCCC-EEEEec-CCCeEEEEECCCceEEEEE
Q 038577          560 RRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGS-YILAGG-SSKYICMYDVADQVLLRRF  619 (860)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~-~dg~v~vwd~~~~~~~~~~  619 (860)
                      ...                     +..+++||||+ +|++.. .++.|.++|+.+++.++++
T Consensus       298 G~~---------------------~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       298 GHE---------------------IDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             CCc---------------------eeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            543                     89999999999 877666 5788999999999999876

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=1.3e-13  Score=136.15  Aligned_cols=281  Identities=15%  Similarity=0.202  Sum_probs=204.9

Q ss_pred             CCCceEEEEecCCCCEEE-EEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceE
Q 038577          263 APSKVTACDYHRGLDMVV-VGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESY  341 (860)
Q Consensus       263 ~~~~v~~~~~~~~~~~l~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~  341 (860)
                      ++...+.+..+|||++++ +|...-.|++||+.+......-......|.-.-.+.|-..++.-..+ ..|.+-..-....
T Consensus        50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~D-R~IefHak~G~hy  128 (703)
T KOG2321|consen   50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQND-RTIEFHAKYGRHY  128 (703)
T ss_pred             CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecC-ceeeehhhcCeee
Confidence            556678899999999865 77788999999997766554444444556655566665555555443 4444432211111


Q ss_pred             EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcc
Q 038577          342 ILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLF  421 (860)
Q Consensus       342 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~  421 (860)
                      ...++   ..-..++++.-..-|..++....|+-++++.|.-+..+....+.++++.+++-...|++|+.+|.|.+||.+
T Consensus       129 ~~RIP---~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR  205 (703)
T KOG2321|consen  129 RTRIP---KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR  205 (703)
T ss_pred             eeecC---cCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence            11111   122345554433334445555689999999999999999888999999999988899999999999999998


Q ss_pred             ccceeeEeeCCCC----------CcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec-CcccCeEEEEEcCC--
Q 038577          422 RYRNFRTFTTPSS----------RQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS-GHEGPVHGLVFSPT--  488 (860)
Q Consensus       422 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~-~h~~~v~~l~~s~~--  488 (860)
                      +......+.....          ..++++.|+.+|-.+++|+..| .+++||+++.+++..-. +..-+|..+.|.+.  
T Consensus       206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G-~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~  284 (703)
T KOG2321|consen  206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG-SVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ  284 (703)
T ss_pred             hhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC-cEEEEEcccCCceeecccCCccceeeecccccCC
Confidence            8776666554322          3489999999999999999999 99999999988775543 33568889999775  


Q ss_pred             CCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCC
Q 038577          489 NATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLN  550 (860)
Q Consensus       489 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  550 (860)
                      +..+++. ....++|||-.+++ ..........+..+++-|++.+++++-.++.+..|=+..
T Consensus       285 q~~v~S~-Dk~~~kiWd~~~Gk-~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  285 QNKVVSM-DKRILKIWDECTGK-PMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             CceEEec-chHHhhhcccccCC-ceeeccccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence            3456554 35779999999998 444555566699999999999999999988887776554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=1e-13  Score=147.06  Aligned_cols=239  Identities=16%  Similarity=0.143  Sum_probs=159.9

Q ss_pred             CcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEe----CCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEE
Q 038577           74 QRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGT----GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNW  149 (860)
Q Consensus        74 ~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  149 (860)
                      ..|.+||...........+...+.+.+|||||+.||+..    ...|++||+.+++.        ..+....+.+.+.+|
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--------~~l~~~~g~~~~~~~  247 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--------RVVANFKGSNSAPAW  247 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--------EEeecCCCCccceEE
Confidence            467777875444444445778899999999999999873    24699999998863        334444556678999


Q ss_pred             cCCCCeEEE-eecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcC-CccEEEeeecCCC
Q 038577          150 SPDSNYLLV-GSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR-DCYMFSWGFSGND  227 (860)
Q Consensus       150 s~d~~~l~s-~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~-dg~i~~w~~~~~~  227 (860)
                      +|||+.|+. .+.+|...+|.++.. .    .....+..+........|+|||+     .|+..+. +|...+|.+....
T Consensus       248 SPDG~~la~~~~~~g~~~Iy~~d~~-~----~~~~~lt~~~~~~~~~~wSpDG~-----~l~f~s~~~g~~~Iy~~~~~~  317 (427)
T PRK02889        248 SPDGRTLAVALSRDGNSQIYTVNAD-G----SGLRRLTQSSGIDTEPFFSPDGR-----SIYFTSDRGGAPQIYRMPASG  317 (427)
T ss_pred             CCCCCEEEEEEccCCCceEEEEECC-C----CCcEECCCCCCCCcCeEEcCCCC-----EEEEEecCCCCcEEEEEECCC
Confidence            999988874 577888778776543 1    12445555666667789999998     7776554 5677777665321


Q ss_pred             CCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCC---eEEEEECCCceeEEEEee
Q 038577          228 GKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNG---VFGLYQMPDFVCIHLLSI  304 (860)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g---~i~~~~~~~~~~~~~~~~  304 (860)
                      .                      ...   ...+.  ........|+|+|+.++..+.++   .|.+|++.+++..... .
T Consensus       318 g----------------------~~~---~lt~~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~  369 (427)
T PRK02889        318 G----------------------AAQ---RVTFT--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-D  369 (427)
T ss_pred             C----------------------ceE---EEecC--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-C
Confidence            1                      000   00111  12234578999999999777654   6999999877654332 2


Q ss_pred             cCceeEEEEEeeCCCEEEEEEccCCc--EEEEEccCceEEEEecCcccCeEEEEEcCC
Q 038577          305 SREKITTAVFNELGNWLVFGCAKLGQ--LLVWEWRSESYILKQQGHYFDVNCLAYSPD  360 (860)
Q Consensus       305 ~~~~i~~~~~s~~~~~l~~~~~~~g~--i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~  360 (860)
                      . .......|+|||+.++++....|.  +.+.+. ++.....+..+.+.+...+|+|-
T Consensus       370 ~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        370 T-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             C-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence            2 234678999999999999876554  445555 34445555556666777788763

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=1.6e-13  Score=135.59  Aligned_cols=280  Identities=15%  Similarity=0.191  Sum_probs=208.9

Q ss_pred             ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 038577          307 EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVT  386 (860)
Q Consensus       307 ~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  386 (860)
                      ...+.+..+|||+++++++.....|++||+..-.....-......|.-.-++.|-..++.-..|.+|.+-.. .|.....
T Consensus        52 ~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G~hy~~  130 (703)
T KOG2321|consen   52 TASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YGRHYRT  130 (703)
T ss_pred             cccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh-cCeeeee
Confidence            456789999999999999888899999999887665543333444555555666666666677777766542 2222211


Q ss_pred             eecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCC
Q 038577          387 FTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT  466 (860)
Q Consensus       387 ~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~  466 (860)
                      -  -...-.+++++.-..-|++++....|+-+++..++-+..+.... ..+.++.+++...+|++|+.++ .+..||.+.
T Consensus       131 R--IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~-~~lN~v~in~~hgLla~Gt~~g-~VEfwDpR~  206 (703)
T KOG2321|consen  131 R--IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS-GELNVVSINEEHGLLACGTEDG-VVEFWDPRD  206 (703)
T ss_pred             e--cCcCCccccccCCCccEEEeecCcceEEEEcccccccccccccc-ccceeeeecCccceEEecccCc-eEEEecchh
Confidence            1  11223456665444446666666789999999999888877654 4789999999999999999998 999999998


Q ss_pred             CceEEEec------Cccc-----CeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc-ccCCCeEEEEEeeC--CC
Q 038577          467 GRLLDILS------GHEG-----PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF-PHTHDVLTVVYRPD--GR  532 (860)
Q Consensus       467 ~~~~~~~~------~h~~-----~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~--~~  532 (860)
                      ...+..+.      .|.+     .|+++.|+.+|-.+++|+.+|.|.|||+++.+++.... ....+|..+.|-+.  +.
T Consensus       207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~  286 (703)
T KOG2321|consen  207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQN  286 (703)
T ss_pred             hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCc
Confidence            76665553      2333     39999999999999999999999999999987544322 45567899999775  34


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 038577          533 QLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVAD  612 (860)
Q Consensus       533 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~  612 (860)
                      .+++. +...++|||-.+|+....+....+                     +..+|+-|++-+++++-+++.+..|=++.
T Consensus       287 ~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~---------------------lND~C~~p~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  287 KVVSM-DKRILKIWDECTGKPMASIEPTSD---------------------LNDFCFVPGSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             eEEec-chHHhhhcccccCCceeeccccCC---------------------cCceeeecCCceEEEecCCCcceeEEccc
Confidence            45554 355699999999999998887765                     89999999999999999888777776654


Q ss_pred             c
Q 038577          613 Q  613 (860)
Q Consensus       613 ~  613 (860)
                      -
T Consensus       345 L  345 (703)
T KOG2321|consen  345 L  345 (703)
T ss_pred             c
Confidence            3

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=9.1e-13  Score=129.83  Aligned_cols=346  Identities=14%  Similarity=0.125  Sum_probs=208.4

Q ss_pred             EEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEE--
Q 038577           34 VSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG--  111 (860)
Q Consensus        34 i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~--  111 (860)
                      ...|+-..+....+-...+-.-+-+.|||-|.||++--.. -|.+|--++-..++++.|++ |.-+.|||+.+||++-  
T Consensus       192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~Hp~-Vq~idfSP~EkYLVT~s~  269 (698)
T KOG2314|consen  192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFYHPG-VQFIDFSPNEKYLVTYSP  269 (698)
T ss_pred             EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEecc-ceeeecCccHHHHHhccCCC-ceeeecCCccceEEEecC
Confidence            5677776654433322233345789999999999998765 48899877777777777765 8999999999999986  


Q ss_pred             ----------eCCeEEEEeCCCCCcccceeEEEEEeec---cCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcc
Q 038577          112 ----------TGKLVQIWRSPGFKKEVFAFELIRTLAD---CNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIH  178 (860)
Q Consensus       112 ----------~~~~i~iwd~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~  178 (860)
                                ....++|||+.+|..       .+.+..   ....-.-..||.|++++|--..+ .|.||+...-     
T Consensus       270 ~p~~~~~~d~e~~~l~IWDI~tG~l-------krsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf-----  336 (698)
T KOG2314|consen  270 EPIIVEEDDNEGQQLIIWDIATGLL-------KRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSF-----  336 (698)
T ss_pred             CccccCcccCCCceEEEEEccccch-------hcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCce-----
Confidence                      125899999999973       333332   12222456899999999987764 7888886553     


Q ss_pred             cccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeec
Q 038577          179 TNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKD  258 (860)
Q Consensus       179 ~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (860)
                       ...-.-.-.-..|....|+|.+.     .|+         .|..++...                              
T Consensus       337 -~lld~Kslki~gIr~FswsP~~~-----llA---------Ywtpe~~~~------------------------------  371 (698)
T KOG2314|consen  337 -MLLDKKSLKISGIRDFSWSPTSN-----LLA---------YWTPETNNI------------------------------  371 (698)
T ss_pred             -eeecccccCCccccCcccCCCcc-----eEE---------EEcccccCC------------------------------
Confidence             11111111234455666776654     332         232222110                              


Q ss_pred             cccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccC
Q 038577          259 DFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRS  338 (860)
Q Consensus       259 ~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~  338 (860)
                                                -..+.+..+++.+.+++...+.-.-..+-|-.+|.+|++-...           
T Consensus       372 --------------------------parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR-----------  414 (698)
T KOG2314|consen  372 --------------------------PARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDR-----------  414 (698)
T ss_pred             --------------------------cceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEe-----------
Confidence                                      0123444444444444433332222233444455555432211           


Q ss_pred             ceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeC---CCcE
Q 038577          339 ESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASL---DGTV  415 (860)
Q Consensus       339 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~---dg~i  415 (860)
                               |..         .+    +.+.-..+.|+.++........-.-...|...+|-|.|+.+++.+.   ..++
T Consensus       415 ---------~tK---------~~----~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tv  472 (698)
T KOG2314|consen  415 ---------HTK---------SK----VKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTV  472 (698)
T ss_pred             ---------ecc---------cc----ccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccce
Confidence                     110         00    1122234666766655443333345678899999999987775543   3468


Q ss_pred             EEEEccc-cceeeEeeCCCCCcEEEEEECCCCCEEEEEecC--CCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEE
Q 038577          416 RAWDLFR-YRNFRTFTTPSSRQFVSLASDQSGEVICAGTLD--SFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATL  492 (860)
Q Consensus       416 ~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l  492 (860)
                      .+|.+.+ ......+..-.....+.+.++|.|++++++.-.  ++.+..+|+.-......-.......+.+.|.|.|+|+
T Consensus       473 sfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYv  552 (698)
T KOG2314|consen  473 SFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYV  552 (698)
T ss_pred             eEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEE
Confidence            8898873 332222222233467889999999999887654  4589999988533322221122345778999999999


Q ss_pred             EEEeCC
Q 038577          493 ASSSWD  498 (860)
Q Consensus       493 ~s~~~d  498 (860)
                      ++++.-
T Consensus       553 vT~ss~  558 (698)
T KOG2314|consen  553 VTSSSS  558 (698)
T ss_pred             EEeeeh
Confidence            998753

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.62  E-value=3.7e-11  Score=123.68  Aligned_cols=279  Identities=15%  Similarity=0.134  Sum_probs=188.6

Q ss_pred             EEEEEcC----CeEEEEEC--CCceeEEEE-eecCceeEEEEEeeCCCEEEEEEc---cCCcEEEEEccCc--e--EEEE
Q 038577          279 VVVGFSN----GVFGLYQM--PDFVCIHLL-SISREKITTAVFNELGNWLVFGCA---KLGQLLVWEWRSE--S--YILK  344 (860)
Q Consensus       279 l~~~~~~----g~i~~~~~--~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~---~~g~i~v~d~~~~--~--~~~~  344 (860)
                      +++|+..    +.|.+|++  .+++....- .........++++|+++.|.++..   ..|.|..|.+...  .  .+..
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~   81 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS   81 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence            4455554    67888877  444433221 123446678999999999999987   4689999998764  2  3333


Q ss_pred             ecCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEECCC-CeeEEE---ee----------cCCCceEEEEEeeCCCEEEEE
Q 038577          345 QQGHYFDVNCLAYSPDSQLLATGAD-DNKVKVWTVSS-GFCFVT---FT----------EHTNAVTALHFMANNHSLLSA  409 (860)
Q Consensus       345 ~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~-~~~~~~---~~----------~~~~~v~~i~~~~~~~~l~s~  409 (860)
                      ..........++++|++++++++.. +|.|.++++.. +.....   +.          .......++.++|+++++++.
T Consensus        82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~  161 (345)
T PF10282_consen   82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP  161 (345)
T ss_dssp             EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred             eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence            3323445678999999999988864 89999999986 433322   11          123457899999999988876


Q ss_pred             eC-CCcEEEEEccccc--e--eeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECC--CCce--EEEecCc----
Q 038577          410 SL-DGTVRAWDLFRYR--N--FRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK--TGRL--LDILSGH----  476 (860)
Q Consensus       410 ~~-dg~i~~wd~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~--~~~~--~~~~~~h----  476 (860)
                      .. ...|.+|++....  .  ...+..+.......++|+|+++++++.....+.|.+|++.  ++..  +..+...    
T Consensus       162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~  241 (345)
T PF10282_consen  162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF  241 (345)
T ss_dssp             ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred             ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence            43 3479999997654  2  3445667777889999999999999988877799999988  4432  2222211    


Q ss_pred             --ccCeEEEEEcCCCCEEEEEe-CCCcEEEEEccC--Ccce--eEEcccCCCeEEEEEeeCCCEEEEEe-CCCeEEEEeC
Q 038577          477 --EGPVHGLVFSPTNATLASSS-WDKTVRLWNVFE--GKGS--VESFPHTHDVLTVVYRPDGRQLACST-LDGQIHFWDP  548 (860)
Q Consensus       477 --~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~--~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~  548 (860)
                        ......|+++|||++|.++. .++.|.+|++..  +...  ..........+.++++|+|++|+++. .++.|.+|++
T Consensus       242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence              12578899999999987765 467899999943  3311  12222344589999999999999887 4568999865


Q ss_pred             --CCCceeEEE
Q 038577          549 --LNGELMYTI  557 (860)
Q Consensus       549 --~~~~~~~~~  557 (860)
                        .+|.+...-
T Consensus       322 d~~tG~l~~~~  332 (345)
T PF10282_consen  322 DPDTGKLTPVG  332 (345)
T ss_dssp             ETTTTEEEEEE
T ss_pred             eCCCCcEEEec
Confidence              566655443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=2.1e-13  Score=145.53  Aligned_cols=233  Identities=13%  Similarity=0.045  Sum_probs=160.1

Q ss_pred             CcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEE----eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEE
Q 038577           74 QRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG----TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNW  149 (860)
Q Consensus        74 ~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  149 (860)
                      ..|.+||...........+...+.+.+|||||+.||..    .+..|++||+.+++.        ..+..+.+.+...+|
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--------~~l~~~~g~~~~~~~  253 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--------ELVGNFPGMTFAPRF  253 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--------EEeecCCCcccCcEE
Confidence            37889998766655555578899999999999999987    346899999988762        445566777889999


Q ss_pred             cCCCCeEE-EeecCCe--EEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcC-Cc--cEEEeee
Q 038577          150 SPDSNYLL-VGSKDLA--VRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR-DC--YMFSWGF  223 (860)
Q Consensus       150 s~d~~~l~-s~~~dg~--v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~-dg--~i~~w~~  223 (860)
                      +|||+.|+ +.+.++.  |.+||+.++       ....+..+........|+||++     .|+..+. +|  .|+++++
T Consensus       254 SPDG~~la~~~~~~g~~~Iy~~d~~~~-------~~~~Lt~~~~~~~~~~~spDG~-----~i~f~s~~~g~~~Iy~~d~  321 (435)
T PRK05137        254 SPDGRKVVMSLSQGGNTDIYTMDLRSG-------TTTRLTDSPAIDTSPSYSPDGS-----QIVFESDRSGSPQLYVMNA  321 (435)
T ss_pred             CCCCCEEEEEEecCCCceEEEEECCCC-------ceEEccCCCCccCceeEcCCCC-----EEEEEECCCCCCeEEEEEC
Confidence            99998876 4455555  666677665       2345566666677889999998     7776663 33  5677776


Q ss_pred             cCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcC---CeEEEEECCCceeEE
Q 038577          224 SGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSN---GVFGLYQMPDFVCIH  300 (860)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---g~i~~~~~~~~~~~~  300 (860)
                      .++..                             ..+......+....|+|+|+.++....+   ..|.+|++..+. ..
T Consensus       322 ~g~~~-----------------------------~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~  371 (435)
T PRK05137        322 DGSNP-----------------------------RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ER  371 (435)
T ss_pred             CCCCe-----------------------------EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eE
Confidence            55321                             0111123345667899999999876654   368888875544 33


Q ss_pred             EEeecCceeEEEEEeeCCCEEEEEEccC-----CcEEEEEccCceEEEEecCcccCeEEEEEcC
Q 038577          301 LLSISREKITTAVFNELGNWLVFGCAKL-----GQLLVWEWRSESYILKQQGHYFDVNCLAYSP  359 (860)
Q Consensus       301 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~-----g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~  359 (860)
                      .+.. ...+....|+|||+.+++.....     ..+.++|+..+... .+. ....+...+|+|
T Consensus       372 ~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~-~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        372 ILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER-EVP-TPGDASDPAWSP  432 (435)
T ss_pred             eccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE-Ecc-CCCCccCcccCC
Confidence            3332 23567889999999999877643     25777887665443 333 233456667765

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=2.2e-13  Score=145.16  Aligned_cols=234  Identities=15%  Similarity=0.114  Sum_probs=158.5

Q ss_pred             CcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEe----CCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEE
Q 038577           74 QRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGT----GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNW  149 (860)
Q Consensus        74 ~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  149 (860)
                      .+|.+||...+.......+...+.+.+|+|||+.|++..    ...|++||+.+++.        ..+..+.+...+++|
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--------~~l~~~~g~~~~~~~  255 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--------ELVASFRGINGAPSF  255 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--------EEeccCCCCccCceE
Confidence            468999987665555555778899999999999999873    34799999988763        334444555668899


Q ss_pred             cCCCCeEEE-eecCC--eEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEc-CCcc--EEEeee
Q 038577          150 SPDSNYLLV-GSKDL--AVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIA-RDCY--MFSWGF  223 (860)
Q Consensus       150 s~d~~~l~s-~~~dg--~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~-~dg~--i~~w~~  223 (860)
                      +|||+.|+. .+.+|  .|.+||+.++       ....+..+........|+||++     .|+..+ .+|.  ++++++
T Consensus       256 SpDG~~l~~~~s~~g~~~Iy~~d~~~g-------~~~~lt~~~~~~~~~~~spDG~-----~l~f~sd~~g~~~iy~~dl  323 (433)
T PRK04922        256 SPDGRRLALTLSRDGNPEIYVMDLGSR-------QLTRLTNHFGIDTEPTWAPDGK-----SIYFTSDRGGRPQIYRVAA  323 (433)
T ss_pred             CCCCCEEEEEEeCCCCceEEEEECCCC-------CeEECccCCCCccceEECCCCC-----EEEEEECCCCCceEEEEEC
Confidence            999987764 45555  5888998776       2344555655567789999998     777665 4455  555555


Q ss_pred             cCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCC---eEEEEECCCceeEE
Q 038577          224 SGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNG---VFGLYQMPDFVCIH  300 (860)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g---~i~~~~~~~~~~~~  300 (860)
                      .++..                        .   ...+  ........+|+|+|+.++....++   .|.+|++.+++.. 
T Consensus       324 ~~g~~------------------------~---~lt~--~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-  373 (433)
T PRK04922        324 SGGSA------------------------E---RLTF--QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-  373 (433)
T ss_pred             CCCCe------------------------E---Eeec--CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-
Confidence            44321                        0   0011  122344689999999998776543   6899999777654 


Q ss_pred             EEeecCceeEEEEEeeCCCEEEEEEccC--CcEEEEEccCceEEEEecCcccCeEEEEEcC
Q 038577          301 LLSISREKITTAVFNELGNWLVFGCAKL--GQLLVWEWRSESYILKQQGHYFDVNCLAYSP  359 (860)
Q Consensus       301 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~--g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~  359 (860)
                      .+... .......|+|||+.+++.....  +.|.+++... .....+..+.+.+...+|+|
T Consensus       374 ~Lt~~-~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        374 TLTPG-SLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             ECCCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEcccCCCCCCCCccCC
Confidence            33322 2345679999999999887653  3577777754 34444545556677777776

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.59  E-value=5.5e-11  Score=122.41  Aligned_cols=244  Identities=14%  Similarity=0.133  Sum_probs=170.3

Q ss_pred             CCceEEEEecCCCCEEEEEEc----CCeEEEEECCCc----eeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEE
Q 038577          264 PSKVTACDYHRGLDMVVVGFS----NGVFGLYQMPDF----VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWE  335 (860)
Q Consensus       264 ~~~v~~~~~~~~~~~l~~~~~----~g~i~~~~~~~~----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d  335 (860)
                      ......++++|++++|++...    +|.|..|.+...    +.+............++++|++++++++...+|.+.+++
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~  115 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP  115 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence            345677889999999998887    479999988653    233444434556678999999999999998889999999


Q ss_pred             ccC-ceEEEE---ec----------CcccCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCe--eE--EEe-ecCCCceE
Q 038577          336 WRS-ESYILK---QQ----------GHYFDVNCLAYSPDSQLLATGAD-DNKVKVWTVSSGF--CF--VTF-TEHTNAVT  395 (860)
Q Consensus       336 ~~~-~~~~~~---~~----------~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~--~~--~~~-~~~~~~v~  395 (860)
                      +.. +.....   ..          .......++.++|+|+++++... ...|.+|++....  ..  ..+ .......+
T Consensus       116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR  195 (345)
T PF10282_consen  116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR  195 (345)
T ss_dssp             ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred             ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence            987 333222   10          12245789999999998887654 4579999987654  21  222 23456789


Q ss_pred             EEEEeeCCCEEEEEe-CCCcEEEEEcc--ccc--eeeEeeCC-----CCCcEEEEEECCCCCEEEEEecCCCeEEEEECC
Q 038577          396 ALHFMANNHSLLSAS-LDGTVRAWDLF--RYR--NFRTFTTP-----SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK  465 (860)
Q Consensus       396 ~i~~~~~~~~l~s~~-~dg~i~~wd~~--~~~--~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~  465 (860)
                      .+.|+|++++++... .++.|.++++.  ++.  ....+...     .......++++|||++|+++......|.+|++.
T Consensus       196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred             EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence            999999998876554 57789999988  332  22222211     112578899999999999998887799999993


Q ss_pred             --CCce--EEEecCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcc
Q 038577          466 --TGRL--LDILSGHEGPVHGLVFSPTNATLASSSW-DKTVRLWNVF  507 (860)
Q Consensus       466 --~~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~  507 (860)
                        ++++  +..+.........++++|+|++|+++.. ++.|.+|++.
T Consensus       276 ~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  276 PATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             TTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             cCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence              3443  3344433445899999999999988874 6789999875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.59  E-value=2.1e-13  Score=125.97  Aligned_cols=157  Identities=24%  Similarity=0.367  Sum_probs=114.3

Q ss_pred             EEEEECCCCCEEEEEecC---C------CeEEEEECCC-CceEEEecC-cccCeEEEEEcCCCCEEEEE--eCCCcEEEE
Q 038577          438 VSLASDQSGEVICAGTLD---S------FEIFVWSMKT-GRLLDILSG-HEGPVHGLVFSPTNATLASS--SWDKTVRLW  504 (860)
Q Consensus       438 ~~~~~~~~~~~l~~~~~~---~------~~i~v~d~~~-~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~--~~dg~i~iw  504 (860)
                      ..+.|+++|.+|++-...   .      +...+|.++. +.....+.- ..++|.+++|+|+|+.+|+.  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            567889999888775541   0      1344444422 233444432 45679999999999987654  457899999


Q ss_pred             EccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeC---CCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCC
Q 038577          505 NVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTL---DGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSG  581 (860)
Q Consensus       505 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  581 (860)
                      |++ .+.+..+  +...+..+.|||+|++|++++.   .|.|.+||.++.+.+......                     
T Consensus        89 d~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~---------------------  144 (194)
T PF08662_consen   89 DVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS---------------------  144 (194)
T ss_pred             cCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC---------------------
Confidence            996 4334433  3567789999999999999874   467999999988888776543                     


Q ss_pred             CcEEEEEEecCCCEEEEecC------CCeEEEEECCCceEEEEEe
Q 038577          582 KCFTTLCYSADGSYILAGGS------SKYICMYDVADQVLLRRFQ  620 (860)
Q Consensus       582 ~~i~~l~~s~~g~~l~~~~~------dg~v~vwd~~~~~~~~~~~  620 (860)
                       .++.++|||||++|+++..      |..++||+.. |+++.+..
T Consensus       145 -~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  145 -DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             -cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence             2789999999999998864      6789999985 66666544

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=2.7e-14  Score=140.03  Aligned_cols=235  Identities=18%  Similarity=0.247  Sum_probs=171.4

Q ss_pred             eEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECC--CCCEEEEEecCCCeEE
Q 038577          383 CFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQ--SGEVICAGTLDSFEIF  460 (860)
Q Consensus       383 ~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~i~  460 (860)
                      ...++.+|.+-|.++.|+.+|.+|++|+.|-.+.|||....+....+...+...|.++.|-|  ..+.+++|..|. .|+
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk-~i~  120 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK-LIK  120 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcc-eEE
Confidence            34578899999999999999999999999999999999999999999999999999999987  456778888888 999


Q ss_pred             EEECCCC----------ceEEEecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEEccCCcceeE----------EcccC
Q 038577          461 VWSMKTG----------RLLDILSGHEGPVHGLVFSPTN-ATLASSSWDKTVRLWNVFEGKGSVE----------SFPHT  519 (860)
Q Consensus       461 v~d~~~~----------~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~----------~~~~~  519 (860)
                      +||+...          +....+..|...|..++-.|++ ..+.++++||+++-+|++.......          ....-
T Consensus       121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l  200 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL  200 (758)
T ss_pred             EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence            9999842          3445667899999999999998 6788999999999999987432211          11223


Q ss_pred             CCeEEEEEee-CCCEEEEEeCCCeEEEEeCCCCceeEEEeccc--ccC-C---Cccc---ccccccc---ccCCCCcEEE
Q 038577          520 HDVLTVVYRP-DGRQLACSTLDGQIHFWDPLNGELMYTIEGRR--DIS-G---GRLM---TDRRSAA---NSSSGKCFTT  586 (860)
Q Consensus       520 ~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~-~---~~~~---~~~~~~~---~~~~~~~i~~  586 (860)
                      -...++..+| +..+||+|+.|-..++||.+..  +..+....  ... .   +...   .......   .......++.
T Consensus       201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~--lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~  278 (758)
T KOG1310|consen  201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRV--LKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY  278 (758)
T ss_pred             heeeeeeecCCCCceEEecCCCchhhhhhhhhh--ccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence            4567899999 4568999999999999995321  11111100  000 0   0000   0000000   0001124688


Q ss_pred             EEEecCCCEEEEecCCCeEEEEECCCceEEEEEe
Q 038577          587 LCYSADGSYILAGGSSKYICMYDVADQVLLRRFQ  620 (860)
Q Consensus       587 l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~  620 (860)
                      +.|+|+|.-|++.-....|+++|+..++....+-
T Consensus       279 vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~  312 (758)
T KOG1310|consen  279 VTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF  312 (758)
T ss_pred             EEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence            8999999987777666789999999987665443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.59  E-value=5.5e-10  Score=127.09  Aligned_cols=422  Identities=13%  Similarity=0.129  Sum_probs=254.1

Q ss_pred             cCCCeEEEEEcCCCCeEEEeecCCeEEEE----eecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCC
Q 038577          140 CNDKVTALNWSPDSNYLLVGSKDLAVRLF----YVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARD  215 (860)
Q Consensus       140 h~~~v~~l~~s~d~~~l~s~~~dg~v~vw----d~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~d  215 (860)
                      ..+.|.++.|.+|...++.+..+|.|.+.    +....       .......-...|.+++||||+.     .|+..+.+
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-------~~E~VG~vd~GI~a~~WSPD~E-----lla~vT~~  141 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-------EIEIVGSVDSGILAASWSPDEE-----LLALVTGE  141 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-------eeEEEEEEcCcEEEEEECCCcC-----EEEEEeCC
Confidence            45779999999999999999999999999    44333       3344445677999999999999     99999989


Q ss_pred             ccEEEeeecCC----CCCCccccCCCCCC----------CCCCCcce----eeeEEe--eeeccccCCCCceEEEEecCC
Q 038577          216 CYMFSWGFSGN----DGKIDETMEDSEPP----------SPGTPERR----VKKWGL--LRKDDFSQAPSKVTACDYHRG  275 (860)
Q Consensus       216 g~i~~w~~~~~----~~~~~~~~~~~~~~----------~~~~~~~~----~~~~~~--~~~~~~~~~~~~v~~~~~~~~  275 (860)
                      +++.+-+.+-.    ..............          -.+...+.    .+.-..  .....+. ....-..++|-.|
T Consensus       142 ~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGD  220 (928)
T PF04762_consen  142 GNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGD  220 (928)
T ss_pred             CEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCC
Confidence            88877643211    00000000000000          00000000    000000  0011222 4456788999999


Q ss_pred             CCEEEEEEc---C---CeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccC--CcEEEEEccC---ceEEEE
Q 038577          276 LDMVVVGFS---N---GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKL--GQLLVWEWRS---ESYILK  344 (860)
Q Consensus       276 ~~~l~~~~~---~---g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~--g~i~v~d~~~---~~~~~~  344 (860)
                      |.++|+.+.   .   ..+++|+-+ |....+-..-.+--.+++|.|.|+.++++....  ..|.+|+-..   ++....
T Consensus       221 G~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~  299 (928)
T PF04762_consen  221 GEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLR  299 (928)
T ss_pred             CcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecC
Confidence            999998875   2   579999985 554444443344456889999999999887632  3456665332   222222


Q ss_pred             ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--eEEEeec-CCCceEEEEEeeCC-CEEEEEeCCCcEEEEEc
Q 038577          345 QQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGF--CFVTFTE-HTNAVTALHFMANN-HSLLSASLDGTVRAWDL  420 (860)
Q Consensus       345 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~-~~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~  420 (860)
                      +......|..+.|++|+..||....| .|.+|...+..  ..+++.. ....+..+.|+|.. ..|.....+|.+..+++
T Consensus       300 ~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  300 FDPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             CCCCCceeeEEEECCCCCEEEEEecC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence            22445679999999999999998766 49999987653  2333332 23345569999954 55777777788877665


Q ss_pred             cccceeeEeeCCCCCcEEEEEEC----CCC-CEEEEEecCCCeEEEEECCCCce-----EEEecCcccCeEEEEEcCCCC
Q 038577          421 FRYRNFRTFTTPSSRQFVSLASD----QSG-EVICAGTLDSFEIFVWSMKTGRL-----LDILSGHEGPVHGLVFSPTNA  490 (860)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~l~~~~~~~~~i~v~d~~~~~~-----~~~~~~h~~~v~~l~~s~~~~  490 (860)
                      .-                .+..+    |+. ..+++.  ||..+.+-.++..-.     ...+. -..+|.+++|++++.
T Consensus       379 ~~----------------~v~~s~~~~~~D~g~vaVI--DG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~  439 (928)
T PF04762_consen  379 AW----------------DVSRSPGSSPNDNGTVAVI--DGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNS  439 (928)
T ss_pred             EE----------------EEEecCCCCccCceEEEEE--eCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCC
Confidence            21                11111    111 122222  333677777664421     12233 357899999999998


Q ss_pred             EEEEEeCCCcEEEEEccCCcce--------eEE----------cccCCCeEEEEEeeCCCEEEEEeCC---CeEEEEeCC
Q 038577          491 TLASSSWDKTVRLWNVFEGKGS--------VES----------FPHTHDVLTVVYRPDGRQLACSTLD---GQIHFWDPL  549 (860)
Q Consensus       491 ~l~s~~~dg~i~iwd~~~~~~~--------~~~----------~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~  549 (860)
                      .+++-..||.+.+|........        ...          ......+..++|..+...++....+   ..+.+++..
T Consensus       440 ~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  519 (928)
T PF04762_consen  440 RFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDID  519 (928)
T ss_pred             eEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEec
Confidence            8999999999999986443211        000          1134457888998887777666654   568888874


Q ss_pred             CCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 038577          550 NGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVAD  612 (860)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~  612 (860)
                      ..+...........                 .+.+..+...++...++.-..+|.+...+...
T Consensus       520 ~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~  565 (928)
T PF04762_consen  520 DSENSASVESSTEV-----------------DGVVLIISSSPDSGSLYIQTNDGKVFQLSSDG  565 (928)
T ss_pred             cCCCceeEEEEecc-----------------CceEEEEeeCCCCcEEEEEECCCEEEEeecCC
Confidence            44322111111110                 12345555555555455566677777555444

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.58  E-value=2e-11  Score=121.09  Aligned_cols=275  Identities=11%  Similarity=0.109  Sum_probs=178.0

Q ss_pred             CeEEEEECCCCcEEeecc-CCccCeeEEEEcCCCCEEEEEcC----------CCcEEEEEcccCeEEEEeecCCc-----
Q 038577           32 NRVSVTDLIKSKTVTLPV-ESSSNICRIAVSPDGTFLLTVDE----------NQRCHFINLHCHVVLHRVRFKYP-----   95 (860)
Q Consensus        32 ~~i~v~d~~~~~~~~~~~-~h~~~v~~va~spdg~~la~~~~----------d~~i~vwd~~~~~~~~~~~~~~~-----   95 (860)
                      ++|.+.|..+++.+.... |...  ..+ +||||+.|+++..          +..|.+||..+.+.+..+..+..     
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P--~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~  103 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLP--NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV  103 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCC--cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence            789999999999876543 3322  234 9999999887654          68999999999999999885333     


Q ss_pred             ---eeEEEECCCCCEEEEE--e-CCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEe
Q 038577           96 ---VNAILFSPNGKYIAVG--T-GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFY  169 (860)
Q Consensus        96 ---v~~~~fspdg~~la~~--~-~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd  169 (860)
                         -..+++||||++|.+.  . ++.|.+.|+.+++.       +..+.- .+...-...+++..+  +-+.||......
T Consensus       104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv-------v~ei~v-p~~~~vy~t~e~~~~--~~~~Dg~~~~v~  173 (352)
T TIGR02658       104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF-------VRMMDV-PDCYHIFPTANDTFF--MHCRDGSLAKVG  173 (352)
T ss_pred             cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE-------EEEEeC-CCCcEEEEecCCccE--EEeecCceEEEE
Confidence               3389999999999987  3 79999999999873       444432 222222222222222  223455554444


Q ss_pred             ecccccCcccccceEeecCCCcEEE-EEEcc-CCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcc
Q 038577          170 VKEKLKGIHTNKPFLLLGHRDSVVG-CFFSV-DKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPER  247 (860)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~h~~~i~~-~~~~~-~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (860)
                      ++...+. .......+.+...++.. -.|.+ ++.     +++...+ |+|.+.|+.......                 
T Consensus       174 ~d~~g~~-~~~~~~vf~~~~~~v~~rP~~~~~dg~-----~~~vs~e-G~V~~id~~~~~~~~-----------------  229 (352)
T TIGR02658       174 YGTKGNP-KIKPTEVFHPEDEYLINHPAYSNKSGR-----LVWPTYT-GKIFQIDLSSGDAKF-----------------  229 (352)
T ss_pred             ecCCCce-EEeeeeeecCCccccccCCceEcCCCc-----EEEEecC-CeEEEEecCCCccee-----------------
Confidence            4433111 00000111110111100 03455 676     6766666 999999976643211                 


Q ss_pred             eeeeEEeeeeccc--cCCCCceEEEEecCCCCEEEEEE----------cCCeEEEEECCCceeEEEEeecCceeEEEEEe
Q 038577          248 RVKKWGLLRKDDF--SQAPSKVTACDYHRGLDMVVVGF----------SNGVFGLYQMPDFVCIHLLSISREKITTAVFN  315 (860)
Q Consensus       248 ~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~----------~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s  315 (860)
                       ...|........  .-.++...-++++|+++++++..          ..+.|.++|..+++.+..+... ..+..++++
T Consensus       230 -~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS  307 (352)
T TIGR02658       230 -LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSINVS  307 (352)
T ss_pred             -cceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEEEC
Confidence             123333221110  11233445599999999998853          2258999999999999988765 488999999


Q ss_pred             eCCC-EEEEEEccCCcEEEEEccCceEEEEe
Q 038577          316 ELGN-WLVFGCAKLGQLLVWEWRSESYILKQ  345 (860)
Q Consensus       316 ~~~~-~l~~~~~~~g~i~v~d~~~~~~~~~~  345 (860)
                      ||++ .++++...++.|.++|..+++.+...
T Consensus       308 ~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       308 QDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             CCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            9999 77777766799999999999988876

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.57  E-value=6.5e-13  Score=142.62  Aligned_cols=218  Identities=20%  Similarity=0.166  Sum_probs=150.6

Q ss_pred             eEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCC---CcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEE
Q 038577           33 RVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDEN---QRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIA  109 (860)
Q Consensus        33 ~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d---~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la  109 (860)
                      .|.++|..++....+. .+...+...+|||||++||++...   ..|++||+.+++......+...+.+++|+|||+.|+
T Consensus       171 ~l~~~d~~g~~~~~l~-~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~  249 (417)
T TIGR02800       171 ELQVADYDGANPQTIT-RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLA  249 (417)
T ss_pred             eEEEEcCCCCCCEEee-cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence            5889998766555554 566678999999999999987643   579999999987665555667778899999999887


Q ss_pred             EE----eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeec-CC--eEEEEeecccccCcccccc
Q 038577          110 VG----TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSK-DL--AVRLFYVKEKLKGIHTNKP  182 (860)
Q Consensus       110 ~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~-dg--~v~vwd~~~~~~~~~~~~~  182 (860)
                      +.    ....|++|++.++.        ...+..+........|+|||+.|+..+. ++  .|.+|++.++       ..
T Consensus       250 ~~~~~~~~~~i~~~d~~~~~--------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~-------~~  314 (417)
T TIGR02800       250 VSLSKDGNPDIYVMDLDGKQ--------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG-------EV  314 (417)
T ss_pred             EEECCCCCccEEEEECCCCC--------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC-------CE
Confidence            65    23469999998765        3445555555667899999998887654 33  5666776654       23


Q ss_pred             eEeecCCCcEEEEEEccCCCCCccceEEEEcCCc---cEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecc
Q 038577          183 FLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDC---YMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDD  259 (860)
Q Consensus       183 ~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg---~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (860)
                      ..+..+........|+|+++     +++..+.++   .|.+|++.++..                        ....   
T Consensus       315 ~~l~~~~~~~~~~~~spdg~-----~i~~~~~~~~~~~i~~~d~~~~~~------------------------~~l~---  362 (417)
T TIGR02800       315 RRLTFRGGYNASPSWSPDGD-----LIAFVHREGGGFNIAVMDLDGGGE------------------------RVLT---  362 (417)
T ss_pred             EEeecCCCCccCeEECCCCC-----EEEEEEccCCceEEEEEeCCCCCe------------------------EEcc---
Confidence            34444556677889999998     888887765   778888765321                        1110   


Q ss_pred             ccCCCCceEEEEecCCCCEEEEEEcCC---eEEEEECCCceeEEEE
Q 038577          260 FSQAPSKVTACDYHRGLDMVVVGFSNG---VFGLYQMPDFVCIHLL  302 (860)
Q Consensus       260 ~~~~~~~v~~~~~~~~~~~l~~~~~~g---~i~~~~~~~~~~~~~~  302 (860)
                        . ........|+|+++.|+....++   .+.+.+. ++.....+
T Consensus       363 --~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~  404 (417)
T TIGR02800       363 --D-TGLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARL  404 (417)
T ss_pred             --C-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeEC
Confidence              0 11223457999999988777654   3445454 33333333

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.57  E-value=4e-11  Score=113.31  Aligned_cols=298  Identities=14%  Similarity=0.168  Sum_probs=196.5

Q ss_pred             CCeEEEEECCC--CcE-EeeccCCccCeeEEEEcCCCCEEEEEcC---CCcEEEEEccc--CeEE--EEee-cCCceeEE
Q 038577           31 GNRVSVTDLIK--SKT-VTLPVESSSNICRIAVSPDGTFLLTVDE---NQRCHFINLHC--HVVL--HRVR-FKYPVNAI   99 (860)
Q Consensus        31 ~~~i~v~d~~~--~~~-~~~~~~h~~~v~~va~spdg~~la~~~~---d~~i~vwd~~~--~~~~--~~~~-~~~~v~~~   99 (860)
                      +..|.+|++.+  |+. ...+..+.+.++-++|+|++++|.++..   .|.|.-+.++.  |+.-  .... ...+-+.+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            45699998874  333 2223367889999999999999988744   57888887764  4432  2222 34445899


Q ss_pred             EECCCCCEEEEE--eCCeEEEEeCCCCCcccceeEEEEEeeccCCC----------eEEEEEcCCCCeEEEeec-CCeEE
Q 038577          100 LFSPNGKYIAVG--TGKLVQIWRSPGFKKEVFAFELIRTLADCNDK----------VTALNWSPDSNYLLVGSK-DLAVR  166 (860)
Q Consensus       100 ~fspdg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~----------v~~l~~s~d~~~l~s~~~-dg~v~  166 (860)
                      +++++|++|.++  ..+.|.++.+.......    .......|.+.          +.+..|.|++++|++..- --.|.
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~----~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~  170 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQ----PVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIF  170 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccc----cceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEE
Confidence            999999999999  77999999987632211    12223335554          889999999999998743 23699


Q ss_pred             EEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcC-CccEEEeeecCCCCCCccccCCCCCCCCCCC
Q 038577          167 LFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR-DCYMFSWGFSGNDGKIDETMEDSEPPSPGTP  245 (860)
Q Consensus       167 vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  245 (860)
                      +|+++.+  .........+ ........+.|+|+++     +.+..++ +++|.+|..+....+.....           
T Consensus       171 ~y~~~dg--~L~~~~~~~v-~~G~GPRHi~FHpn~k-----~aY~v~EL~stV~v~~y~~~~g~~~~lQ-----------  231 (346)
T COG2706         171 LYDLDDG--KLTPADPAEV-KPGAGPRHIVFHPNGK-----YAYLVNELNSTVDVLEYNPAVGKFEELQ-----------  231 (346)
T ss_pred             EEEcccC--cccccccccc-CCCCCcceEEEcCCCc-----EEEEEeccCCEEEEEEEcCCCceEEEee-----------
Confidence            9999966  2222222333 4556678899999999     8877775 89999999987422111000           


Q ss_pred             cceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcC-CeEEEEECCCc--ee--EEEEeecCceeEEEEEeeCCCE
Q 038577          246 ERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSN-GVFGLYQMPDF--VC--IHLLSISREKITTAVFNELGNW  320 (860)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-g~i~~~~~~~~--~~--~~~~~~~~~~i~~~~~s~~~~~  320 (860)
                           .... ....+ ........+..+|+|++|.+.... ..|.+|.+...  +.  ......+....+...+++.|++
T Consensus       232 -----~i~t-lP~dF-~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~  304 (346)
T COG2706         232 -----TIDT-LPEDF-TGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRF  304 (346)
T ss_pred             -----eecc-Ccccc-CCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCE
Confidence                 0000 01112 233467888999999999887654 57778876532  21  2222333345788999999999


Q ss_pred             EEEEEccCCcEEEEEccC--ceEEEEec-CcccCeEEEEEc
Q 038577          321 LVFGCAKLGQLLVWEWRS--ESYILKQQ-GHYFDVNCLAYS  358 (860)
Q Consensus       321 l~~~~~~~g~i~v~d~~~--~~~~~~~~-~~~~~v~~~~~s  358 (860)
                      |+++..++..+.+|....  |+...... .......|+.|.
T Consensus       305 Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         305 LIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             EEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            999999988899997654  44333222 233445566654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=1.4e-12  Score=138.68  Aligned_cols=232  Identities=16%  Similarity=0.134  Sum_probs=150.0

Q ss_pred             eEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCC---CcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEE
Q 038577           33 RVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDEN---QRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIA  109 (860)
Q Consensus        33 ~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d---~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la  109 (860)
                      .|.++|........+. .+...+.+.+|||||+.||..+.+   ..|.+||+.+++........+.....+|||||+.|+
T Consensus       199 ~l~i~d~dG~~~~~l~-~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La  277 (448)
T PRK04792        199 QLMIADYDGYNEQMLL-RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLA  277 (448)
T ss_pred             EEEEEeCCCCCceEee-cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEE
Confidence            5888898776555443 567789999999999999987542   368899998887644433455566889999999998


Q ss_pred             EE--eCC--eEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeec-CCe--EEEEeecccccCcccccc
Q 038577          110 VG--TGK--LVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSK-DLA--VRLFYVKEKLKGIHTNKP  182 (860)
Q Consensus       110 ~~--~~~--~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~-dg~--v~vwd~~~~~~~~~~~~~  182 (860)
                      ..  .++  .|++||+.+++        ...+..+.......+|+|||+.|+..+. ++.  |.++|+.++      . .
T Consensus       278 ~~~~~~g~~~Iy~~dl~tg~--------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g------~-~  342 (448)
T PRK04792        278 LVLSKDGQPEIYVVDIATKA--------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG------K-V  342 (448)
T ss_pred             EEEeCCCCeEEEEEECCCCC--------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC------C-E
Confidence            76  333  58888988775        3455566666788999999998877654 344  555555554      1 2


Q ss_pred             eEeecCCCcEEEEEEccCCCCCccceEEEEcC-Ccc--EEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecc
Q 038577          183 FLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR-DCY--MFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDD  259 (860)
Q Consensus       183 ~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~-dg~--i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (860)
                      ..+..+........|+||++     +|+..+. ++.  |.++|+.++..                        ....   
T Consensus       343 ~~Lt~~g~~~~~~~~SpDG~-----~l~~~~~~~g~~~I~~~dl~~g~~------------------------~~lt---  390 (448)
T PRK04792        343 SRLTFEGEQNLGGSITPDGR-----SMIMVNRTNGKFNIARQDLETGAM------------------------QVLT---  390 (448)
T ss_pred             EEEecCCCCCcCeeECCCCC-----EEEEEEecCCceEEEEEECCCCCe------------------------EEcc---
Confidence            22222222334568999998     7766654 444  44455554321                        0000   


Q ss_pred             ccCCCCceEEEEecCCCCEEEEEEcC-C--eEEEEECCCceeEEEEeecCceeEEEEEee
Q 038577          260 FSQAPSKVTACDYHRGLDMVVVGFSN-G--VFGLYQMPDFVCIHLLSISREKITTAVFNE  316 (860)
Q Consensus       260 ~~~~~~~v~~~~~~~~~~~l~~~~~~-g--~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~  316 (860)
                        .. .......|+|+|+.++....+ |  .+.+++. ++.....+..+.+.+...+|+|
T Consensus       391 --~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        391 --ST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             --CC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence              00 011234799999998876654 3  3667776 5556666655555666677765

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.54  E-value=4.5e-12  Score=125.03  Aligned_cols=308  Identities=15%  Similarity=0.154  Sum_probs=201.4

Q ss_pred             CcEEEe-CCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcC-----------CCcEEEEEccc
Q 038577           16 GNAVLS-QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDE-----------NQRCHFINLHC   83 (860)
Q Consensus        16 ~~~~~s-dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~-----------d~~i~vwd~~~   83 (860)
                      ..+.|| -|.||++-....|.+|--++-.....+ .|. .|.-+.|||+.+||++-+.           ...++|||+.+
T Consensus       214 tyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t  291 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT  291 (698)
T ss_pred             eeEEecCCceEEEEEeccceeeecCccHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence            358899 999999998888999966655444443 464 4899999999999998642           26799999999


Q ss_pred             CeEEEEeec---CCc-eeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEe
Q 038577           84 HVVLHRVRF---KYP-VNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVG  159 (860)
Q Consensus        84 ~~~~~~~~~---~~~-v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~  159 (860)
                      |...+.+..   +.. -.-..||.|++++|--..+.|.||+.+.-.       ++..-.-.-..|....|+|.++.||.-
T Consensus       292 G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~-------lld~Kslki~gIr~FswsP~~~llAYw  364 (698)
T KOG2314|consen  292 GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFM-------LLDKKSLKISGIRDFSWSPTSNLLAYW  364 (698)
T ss_pred             cchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCcee-------eecccccCCccccCcccCCCcceEEEE
Confidence            999988873   122 235789999999999988999999887632       222222234568889999998888864


Q ss_pred             ecC-----CeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCC----------ccEEEeeec
Q 038577          160 SKD-----LAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARD----------CYMFSWGFS  224 (860)
Q Consensus       160 ~~d-----g~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~d----------g~i~~w~~~  224 (860)
                      ...     ..+.+-.+.+.      +...+..-|.-.=..+.|-.+|.     +|+.--..          ..+-++.+.
T Consensus       365 tpe~~~~parvtL~evPs~------~~iRt~nlfnVsDckLhWQk~gd-----yLcvkvdR~tK~~~~g~f~n~eIfrir  433 (698)
T KOG2314|consen  365 TPETNNIPARVTLMEVPSK------REIRTKNLFNVSDCKLHWQKSGD-----YLCVKVDRHTKSKVKGQFSNLEIFRIR  433 (698)
T ss_pred             cccccCCcceEEEEecCcc------ceeeeccceeeeccEEEeccCCc-----EEEEEEEeeccccccceEeeEEEEEee
Confidence            321     23555555544      23333333333333466667776     65543211          112233222


Q ss_pred             CCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcC---CeEEEEECCC-ceeE-
Q 038577          225 GNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSN---GVFGLYQMPD-FVCI-  299 (860)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---g~i~~~~~~~-~~~~-  299 (860)
                      ....                            ....-.-...|...+|-|.|+.+++-+.+   .++.+|.+.+ .... 
T Consensus       434 eKdI----------------------------pve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~  485 (698)
T KOG2314|consen  434 EKDI----------------------------PVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPS  485 (698)
T ss_pred             ccCC----------------------------CceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchh
Confidence            2110                            00111234568899999999998876554   6788887763 1111 


Q ss_pred             EEEeecCceeEEEEEeeCCCEEEEEEcc--CCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCC
Q 038577          300 HLLSISREKITTAVFNELGNWLVFGCAK--LGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDN  371 (860)
Q Consensus       300 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~--~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  371 (860)
                      ..........+.+.|+|.|+++++++-.  .|.+..+|..-......-.......+.+.|.|.|+++++++...
T Consensus       486 lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~w  559 (698)
T KOG2314|consen  486 LVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSW  559 (698)
T ss_pred             hhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehh
Confidence            1112233567889999999999887643  58999999875333222222223467789999999999988643

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.54  E-value=1.1e-12  Score=124.05  Aligned_cols=258  Identities=17%  Similarity=0.255  Sum_probs=178.7

Q ss_pred             CceEEEEecCCCCE--EEEEEcCCeEEEEECCCceeEEEE------eecCceeEEEEEeeCCCEEEEEEccCCcEEEEEc
Q 038577          265 SKVTACDYHRGLDM--VVVGFSNGVFGLYQMPDFVCIHLL------SISREKITTAVFNELGNWLVFGCAKLGQLLVWEW  336 (860)
Q Consensus       265 ~~v~~~~~~~~~~~--l~~~~~~g~i~~~~~~~~~~~~~~------~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~  336 (860)
                      ..+..++|..+++.  +.....+..+..+..........+      .....+|..++.. | .+|+++.+ +|.+.+|..
T Consensus        56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-d-g~Litc~~-sG~l~~~~~  132 (412)
T KOG3881|consen   56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-D-GTLITCVS-SGNLQVRHD  132 (412)
T ss_pred             hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-C-CEEEEEec-CCcEEEEec
Confidence            45667777655543  333336666666666555444332      2333445444433 2 34444444 499999998


Q ss_pred             cCce----EEEEecCcccCeEEEEEcCCCC-EEEEEeCC--CcEEEEECCCCeeEEEeecC---------CCceEEEEEe
Q 038577          337 RSES----YILKQQGHYFDVNCLAYSPDSQ-LLATGADD--NKVKVWTVSSGFCFVTFTEH---------TNAVTALHFM  400 (860)
Q Consensus       337 ~~~~----~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d--g~i~iwd~~~~~~~~~~~~~---------~~~v~~i~~~  400 (860)
                      +.+.    .+..+..+ ..+..+.-++... ++++|+..  ..+.+||++..+.+..-+.-         .-.++++.|.
T Consensus       133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl  211 (412)
T KOG3881|consen  133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL  211 (412)
T ss_pred             cCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence            8442    22222222 3455566565544 55568888  78999999988655543321         1235678888


Q ss_pred             eC--CCEEEEEeCCCcEEEEEccccce-eeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEE-ecCc
Q 038577          401 AN--NHSLLSASLDGTVRAWDLFRYRN-FRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDI-LSGH  476 (860)
Q Consensus       401 ~~--~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~-~~~h  476 (860)
                      +.  ...|++++.-+.+++||.+.++. +..+.. ....+.++...|+|+++++|...+ .+..||+++++.... +.+-
T Consensus       212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~-~E~~is~~~l~p~gn~Iy~gn~~g-~l~~FD~r~~kl~g~~~kg~  289 (412)
T KOG3881|consen  212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF-LENPISSTGLTPSGNFIYTGNTKG-QLAKFDLRGGKLLGCGLKGI  289 (412)
T ss_pred             CCCCCceEEEEecceeEEEecCcccCcceeEecc-ccCcceeeeecCCCcEEEEecccc-hhheecccCceeeccccCCc
Confidence            87  78999999999999999987654 444443 355889999999999999999998 999999999998877 8999


Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEee
Q 038577          477 EGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRP  529 (860)
Q Consensus       477 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  529 (860)
                      .+.|+++..+|.++++++++-|+.|||+|+.+.+.+.... -...++++.+.+
T Consensus       290 tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~  341 (412)
T KOG3881|consen  290 TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRD  341 (412)
T ss_pred             cCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecC
Confidence            9999999999999999999999999999999865443322 233455555544

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=1.8e-12  Score=139.06  Aligned_cols=232  Identities=16%  Similarity=0.102  Sum_probs=153.2

Q ss_pred             eEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCC---CcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEE
Q 038577           33 RVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDEN---QRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIA  109 (860)
Q Consensus        33 ~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d---~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la  109 (860)
                      .|.++|..++....+. .+...+...+|||||+.||+.+.+   ..|.+||+.+++........+.+...+|||||+.|+
T Consensus       180 ~l~~~d~~g~~~~~l~-~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la  258 (430)
T PRK00178        180 TLQRSDYDGARAVTLL-QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLA  258 (430)
T ss_pred             EEEEECCCCCCceEEe-cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEE
Confidence            4888898877665554 567789999999999999887543   469999999887655444556677899999999998


Q ss_pred             EE--eC--CeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeec-CC--eEEEEeecccccCcccccc
Q 038577          110 VG--TG--KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSK-DL--AVRLFYVKEKLKGIHTNKP  182 (860)
Q Consensus       110 ~~--~~--~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~-dg--~v~vwd~~~~~~~~~~~~~  182 (860)
                      ..  .+  ..|++||+.+++        ...+..+........|+|||+.++..+. +|  .|.++++.++      . .
T Consensus       259 ~~~~~~g~~~Iy~~d~~~~~--------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g------~-~  323 (430)
T PRK00178        259 FVLSKDGNPEIYVMDLASRQ--------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG------R-A  323 (430)
T ss_pred             EEEccCCCceEEEEECCCCC--------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC------C-E
Confidence            65  23  378999998875        3445566666778899999998877654 33  4666666655      1 1


Q ss_pred             eEeecCCCcEEEEEEccCCCCCccceEEEEcCC-c--cEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecc
Q 038577          183 FLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARD-C--YMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDD  259 (860)
Q Consensus       183 ~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~d-g--~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (860)
                      ..+...........|+|+++     .++..+.+ +  .|.+||+.++..                        ....   
T Consensus       324 ~~lt~~~~~~~~~~~Spdg~-----~i~~~~~~~~~~~l~~~dl~tg~~------------------------~~lt---  371 (430)
T PRK00178        324 ERVTFVGNYNARPRLSADGK-----TLVMVHRQDGNFHVAAQDLQRGSV------------------------RILT---  371 (430)
T ss_pred             EEeecCCCCccceEECCCCC-----EEEEEEccCCceEEEEEECCCCCE------------------------EEcc---
Confidence            22222222334578999998     77766543 3  477778776432                        0000   


Q ss_pred             ccCCCCceEEEEecCCCCEEEEEEcC---CeEEEEECCCceeEEEEeecCceeEEEEEee
Q 038577          260 FSQAPSKVTACDYHRGLDMVVVGFSN---GVFGLYQMPDFVCIHLLSISREKITTAVFNE  316 (860)
Q Consensus       260 ~~~~~~~v~~~~~~~~~~~l~~~~~~---g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~  316 (860)
                        .. .......|+|+|+.++....+   ..+.+++.. +.....+..+.+.+...+|+|
T Consensus       372 --~~-~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        372 --DT-SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             --CC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence              00 111245799999999876654   346666763 333444444444555566654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=4.8e-12  Score=133.26  Aligned_cols=242  Identities=14%  Similarity=0.050  Sum_probs=155.4

Q ss_pred             eEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEE---EEcCC--CcEEEEEcccCeEEEEeecCCceeEEEECCCCCE
Q 038577           33 RVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLL---TVDEN--QRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKY  107 (860)
Q Consensus        33 ~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la---~~~~d--~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~  107 (860)
                      .|.+.|..++..+.+. .....+...+|||||+.++   +...+  ..|.+.++.+++........+.....+|||||+.
T Consensus       166 ~l~~~d~dG~~~~~lt-~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~  244 (428)
T PRK01029        166 ELWSVDYDGQNLRPLT-QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL  244 (428)
T ss_pred             eEEEEcCCCCCceEcc-cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence            6888899888776655 3455678889999998633   33333  4688889988876665556677778999999999


Q ss_pred             EEEEeC--C--eE--EEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEee-cCCeEEEEeecccccCcccc
Q 038577          108 IAVGTG--K--LV--QIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGS-KDLAVRLFYVKEKLKGIHTN  180 (860)
Q Consensus       108 la~~~~--~--~i--~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~-~dg~v~vwd~~~~~~~~~~~  180 (860)
                      ||...+  +  .+  .+|++.++... .   ......++.+.....+|+|||+.|+..+ .+|...+|.+......   .
T Consensus       245 Laf~s~~~g~~di~~~~~~~~~g~~g-~---~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g---~  317 (428)
T PRK01029        245 LAFISDRYGNPDLFIQSFSLETGAIG-K---PRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG---Q  317 (428)
T ss_pred             EEEEECCCCCcceeEEEeecccCCCC-c---ceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc---c
Confidence            998742  2  34  34676653110 0   1122223334456789999999888765 4666666655321001   1


Q ss_pred             cceEeecCCCcEEEEEEccCCCCCccceEEEEcCC---ccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeee
Q 038577          181 KPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARD---CYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRK  257 (860)
Q Consensus       181 ~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (860)
                      ....+..+...+....|+|||+     .|+..+.+   ..|.+||+.++..                             
T Consensus       318 ~~~~lt~~~~~~~~p~wSPDG~-----~Laf~~~~~g~~~I~v~dl~~g~~-----------------------------  363 (428)
T PRK01029        318 SPRLLTKKYRNSSCPAWSPDGK-----KIAFCSVIKGVRQICVYDLATGRD-----------------------------  363 (428)
T ss_pred             ceEEeccCCCCccceeECCCCC-----EEEEEEcCCCCcEEEEEECCCCCe-----------------------------
Confidence            2344555556677889999999     78766543   3688888877532                             


Q ss_pred             ccccCCCCceEEEEecCCCCEEEEEEc---CCeEEEEECCCceeEEEEeecCceeEEEEEeeC
Q 038577          258 DDFSQAPSKVTACDYHRGLDMVVVGFS---NGVFGLYQMPDFVCIHLLSISREKITTAVFNEL  317 (860)
Q Consensus       258 ~~~~~~~~~v~~~~~~~~~~~l~~~~~---~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  317 (860)
                      ..+......+....|+|+|+.|+....   ...+.++++..++..... ...+.+...+|+|-
T Consensus       364 ~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~  425 (428)
T PRK01029        364 YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPSWGAF  425 (428)
T ss_pred             EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCceecCC
Confidence            111111234567889999998886543   357888898776654433 34445666777764

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.53  E-value=1.6e-12  Score=122.75  Aligned_cols=252  Identities=12%  Similarity=0.102  Sum_probs=181.4

Q ss_pred             ceeEEEEEeeCCCEEE-EEEccCCcEEEEEccCceEEEEe------cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 038577          307 EKITTAVFNELGNWLV-FGCAKLGQLLVWEWRSESYILKQ------QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVS  379 (860)
Q Consensus       307 ~~i~~~~~s~~~~~l~-~~~~~~g~i~v~d~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  379 (860)
                      ..+..++|..+++.=+ .+...+..+..+...........      .....+|..++.. || .|++|-.+|.+.+|...
T Consensus        56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k  133 (412)
T KOG3881|consen   56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDK  133 (412)
T ss_pred             hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC-EEEEEecCCcEEEEecc
Confidence            4566677766554332 22223344555554444333221      2234455555544 33 67888889999999987


Q ss_pred             CCe----eEEEeecCCCceEEEEEeeCCC-EEEEEeCC--CcEEEEEccccceeeEeeCCC--------CCcEEEEEECC
Q 038577          380 SGF----CFVTFTEHTNAVTALHFMANNH-SLLSASLD--GTVRAWDLFRYRNFRTFTTPS--------SRQFVSLASDQ  444 (860)
Q Consensus       380 ~~~----~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~d--g~i~~wd~~~~~~~~~~~~~~--------~~~~~~~~~~~  444 (860)
                      .+.    .+..+..+ ..+..+.-++... .+++||..  ..+.+||+...+.+..-....        +..++.+.|-+
T Consensus       134 ~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~  212 (412)
T KOG3881|consen  134 SGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE  212 (412)
T ss_pred             CCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC
Confidence            432    23333322 4555666666554 45568888  789999998875544333222        23456778877


Q ss_pred             C--CCEEEEEecCCCeEEEEECCCC-ceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeE-EcccCC
Q 038577          445 S--GEVICAGTLDSFEIFVWSMKTG-RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVE-SFPHTH  520 (860)
Q Consensus       445 ~--~~~l~~~~~~~~~i~v~d~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~  520 (860)
                      .  ...+++++.-+ ++++||.+.+ +++..+.--..+++++...|+++++++|..-|.+..||++.+..... +.+..+
T Consensus       213 g~~~~~fat~T~~h-qvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG  291 (412)
T KOG3881|consen  213 GSPNYKFATITRYH-QVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG  291 (412)
T ss_pred             CCCCceEEEEecce-eEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC
Confidence            7  78888888887 9999999975 57788887889999999999999999999999999999999987766 557889


Q ss_pred             CeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccc
Q 038577          521 DVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRD  562 (860)
Q Consensus       521 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  562 (860)
                      .++++..+|.++++|+++-|..++|+|+.+.+++........
T Consensus       292 sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~  333 (412)
T KOG3881|consen  292 SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSR  333 (412)
T ss_pred             CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhcc
Confidence            999999999999999999999999999999888877766543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.53  E-value=6.7e-13  Score=123.00  Aligned_cols=337  Identities=17%  Similarity=0.234  Sum_probs=224.4

Q ss_pred             EEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEE
Q 038577          133 LIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTI  212 (860)
Q Consensus       133 ~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~  212 (860)
                      +++.++||.+.++....-|-..-+++.+.|.+++||--... ..   .-+........+++++.+.++..     .|+.+
T Consensus        16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds-~q---~wpsI~~~mP~~~~~~~y~~e~~-----~L~vg   86 (404)
T KOG1409|consen   16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDS-GQ---YWPSIYHYMPSPCSAMEYVSESR-----RLYVG   86 (404)
T ss_pred             hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccc-cc---cCchhhhhCCCCceEeeeeccce-----EEEEE
Confidence            57788999999999999898889999999999999976554 11   22333344567788999999988     99999


Q ss_pred             cCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEE
Q 038577          213 ARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQ  292 (860)
Q Consensus       213 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~  292 (860)
                      -..|++.-+.+...-.                        +.........|...+..+-|+-..+.+++.+.|..+.-.-
T Consensus        87 ~~ngtvtefs~sedfn------------------------km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc  142 (404)
T KOG1409|consen   87 QDNGTVTEFALSEDFN------------------------KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHC  142 (404)
T ss_pred             EecceEEEEEhhhhhh------------------------hcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEe
Confidence            9999999887765322                        0112344556788899999999889999998887766555


Q ss_pred             CCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEc--cCceEEEEecCcccCeEEEEEcCCCCEEEEEeCC
Q 038577          293 MPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEW--RSESYILKQQGHYFDVNCLAYSPDSQLLATGADD  370 (860)
Q Consensus       293 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  370 (860)
                      .+.+..+..+.... ..+++.+.-.   .+..+...|.+..-.+  ..-..+.++.+|.+.+.+++|.+....+.+|..|
T Consensus       143 ~e~~~~lg~Y~~~~-~~t~~~~d~~---~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d  218 (404)
T KOG1409|consen  143 TESGNRLGGYNFET-PASALQFDAL---YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASD  218 (404)
T ss_pred             eccCCcccceEeec-cCCCCceeeE---EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEecccc
Confidence            55444432221110 1111111111   2223333355555443  4456677889999999999999999999999999


Q ss_pred             CcEEEEECCCCe-eEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCC-----------------
Q 038577          371 NKVKVWTVSSGF-CFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTP-----------------  432 (860)
Q Consensus       371 g~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-----------------  432 (860)
                      ..+.+||+.-++ ...++.+|...|..+...+--+.+++++.||.|.+|+.+..+....--..                 
T Consensus       219 ~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~  298 (404)
T KOG1409|consen  219 HSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQ  298 (404)
T ss_pred             CceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHH
Confidence            999999997543 34567789999999998888889999999999999998643321100000                 


Q ss_pred             ----------------CCCcEEEEEECCCCCEEEEEecCCCeEEEEECC-------CCceEEEecCcccCeEEEEEcCCC
Q 038577          433 ----------------SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK-------TGRLLDILSGHEGPVHGLVFSPTN  489 (860)
Q Consensus       433 ----------------~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~-------~~~~~~~~~~h~~~v~~l~~s~~~  489 (860)
                                      ....+...+-+....+...|..-  .+++.|.-       +..++..+..-...|+.+.+..+-
T Consensus       299 m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~--~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetl  376 (404)
T KOG1409|consen  299 MWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEF--SVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETL  376 (404)
T ss_pred             HHhhhhhhhhhhhhhhhhhhcCcccccCcccccccccee--EEEEecccchhhhcCCCCccccccccccceeEEEhhhhc
Confidence                            00011111111111121112111  34444321       122344443334568888888888


Q ss_pred             CEEEEEeCCCcEEEEEccC
Q 038577          490 ATLASSSWDKTVRLWNVFE  508 (860)
Q Consensus       490 ~~l~s~~~dg~i~iwd~~~  508 (860)
                      .+|+|++.|+.|+|||+..
T Consensus       377 glLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  377 GLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             cceeecCCceEEEEEechh
Confidence            8999999999999999864

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.52  E-value=1.2e-12  Score=120.93  Aligned_cols=146  Identities=18%  Similarity=0.353  Sum_probs=107.9

Q ss_pred             cEEEe-CCCEEEeeeC-----------CeEEEEEC--CCCcEEeeccCCccCeeEEEEcCCCCEEEEE--cCCCcEEEEE
Q 038577           17 NAVLS-QNTKLISPVG-----------NRVSVTDL--IKSKTVTLPVESSSNICRIAVSPDGTFLLTV--DENQRCHFIN   80 (860)
Q Consensus        17 ~~~~s-dg~~l~~~~~-----------~~i~v~d~--~~~~~~~~~~~h~~~v~~va~spdg~~la~~--~~d~~i~vwd   80 (860)
                      .+.++ +|++|++-..           +...+|.+  .......+.....+.|.+++|+|+|+.+|++  ..++.|.+||
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd   89 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD   89 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence            46677 9988887433           23445544  4444344433455679999999999988765  3567999999


Q ss_pred             cccCeEEEEeecCCceeEEEECCCCCEEEEEe----CCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeE
Q 038577           81 LHCHVVLHRVRFKYPVNAILFSPNGKYIAVGT----GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYL  156 (860)
Q Consensus        81 ~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l  156 (860)
                      ++ ++.+..+. ...+..+.|||+|++||+++    .|.|.+||..+.+       .+.... | ..++.++|+|||+++
T Consensus        90 ~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~-------~i~~~~-~-~~~t~~~WsPdGr~~  158 (194)
T PF08662_consen   90 VK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK-------KISTFE-H-SDATDVEWSPDGRYL  158 (194)
T ss_pred             Cc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE-------Eeeccc-c-CcEEEEEEcCCCCEE
Confidence            97 66666665 56788999999999999983    4689999999665       233332 3 357899999999999


Q ss_pred             EEeec------CCeEEEEeeccc
Q 038577          157 LVGSK------DLAVRLFYVKEK  173 (860)
Q Consensus       157 ~s~~~------dg~v~vwd~~~~  173 (860)
                      +++..      |..++||+....
T Consensus       159 ~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  159 ATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             EEEEeccceeccccEEEEEecCe
Confidence            99864      778999998654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.51  E-value=2.6e-12  Score=119.10  Aligned_cols=325  Identities=14%  Similarity=0.222  Sum_probs=204.4

Q ss_pred             cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccC------------CCeEEEEEcCCC--CeE
Q 038577           92 FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCN------------DKVTALNWSPDS--NYL  156 (860)
Q Consensus        92 ~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~------------~~v~~l~~s~d~--~~l  156 (860)
                      ...-|.++.|...|.+||+| .+|.|.++.-......  .......+..|.            ..|..+.|.+++  ..+
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~--ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F  101 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG--EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF  101 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeeccccccc--ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence            34568999999999999999 7889999875543321  222334444453            357889999877  456


Q ss_pred             EEeecCCeEEEEeecccccCc-------------------cc----------ccc-eEeecCCCcEEEEEEccCCCCCcc
Q 038577          157 LVGSKDLAVRLFYVKEKLKGI-------------------HT----------NKP-FLLLGHRDSVVGCFFSVDKKTDKV  206 (860)
Q Consensus       157 ~s~~~dg~v~vwd~~~~~~~~-------------------~~----------~~~-~~~~~h~~~i~~~~~~~~~~~~~~  206 (860)
                      +..+.|.+|++|.+.......                   +.          .+. .--..|...|.++.+..|.+    
T Consensus       102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E----  177 (433)
T KOG1354|consen  102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE----  177 (433)
T ss_pred             EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc----
Confidence            677889999999987652111                   00          000 01125778899999999987    


Q ss_pred             ceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeee--ccccCCCCceEEEEecCCC-CEEEEEE
Q 038577          207 NRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRK--DDFSQAPSKVTACDYHRGL-DMVVVGF  283 (860)
Q Consensus       207 ~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~-~~l~~~~  283 (860)
                       .++++ +|=.|.+|+++-...                      .+.+...  .....-...|++..|+|.. +.++..+
T Consensus       178 -t~lSA-DdLRINLWnlei~d~----------------------sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS  233 (433)
T KOG1354|consen  178 -TFLSA-DDLRINLWNLEIIDQ----------------------SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS  233 (433)
T ss_pred             -eEeec-cceeeeeccccccCC----------------------ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec
Confidence             55554 578999999875332                      2333221  1122223458888999964 6778889


Q ss_pred             cCCeEEEEECCCceeE------EE----------EeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc-CceEEEEec
Q 038577          284 SNGVFGLYQMPDFVCI------HL----------LSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR-SESYILKQQ  346 (860)
Q Consensus       284 ~~g~i~~~~~~~~~~~------~~----------~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~-~~~~~~~~~  346 (860)
                      ..|+|++.|+.....-      ..          +..--..|..+.|+++|+++++-..  -+|++||+. ..+.+...+
T Consensus       234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy--ltvk~wD~nme~~pv~t~~  311 (433)
T KOG1354|consen  234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY--LTVKLWDLNMEAKPVETYP  311 (433)
T ss_pred             CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc--ceeEEEeccccCCcceEEe
Confidence            9999999999732211      11          1111246888999999999987644  689999994 445555554


Q ss_pred             Cccc---------------CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE-EEeecCCCc--eEEEEEeeCCCEEEE
Q 038577          347 GHYF---------------DVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCF-VTFTEHTNA--VTALHFMANNHSLLS  408 (860)
Q Consensus       347 ~~~~---------------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~--v~~i~~~~~~~~l~s  408 (860)
                      -|..               .-..++|+.++..++||+..+..++|+...|... .++......  +..+   ..-+.+.+
T Consensus       312 vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~  388 (433)
T KOG1354|consen  312 VHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV---LKLRLVSS  388 (433)
T ss_pred             ehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCccccc---ccceeeec
Confidence            4431               1245789999999999999999999997665432 222222111  1111   11223444


Q ss_pred             EeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEE
Q 038577          409 ASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVW  462 (860)
Q Consensus       409 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~  462 (860)
                      ++......+|-         -.......+...+|+|..+.+|++..++  +++|
T Consensus       389 ~g~r~~~~~~v---------d~ldf~kkilh~aWhp~en~ia~aatnn--lyif  431 (433)
T KOG1354|consen  389 SGKRKRDEISV---------DALDFRKKILHTAWHPKENSIAVAATNN--LYIF  431 (433)
T ss_pred             CCCcccccccc---------chhhhhhHHHhhccCCccceeeeeecCc--eEEe
Confidence            44333211110         0111223456778999999999988874  6665

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=3.8e-11  Score=126.47  Aligned_cols=226  Identities=9%  Similarity=0.036  Sum_probs=144.8

Q ss_pred             CcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEE---EEeCCC--cEEEEECCCCeeEEEeecCCCceEEEEEeeCC
Q 038577          329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLA---TGADDN--KVKVWTVSSGFCFVTFTEHTNAVTALHFMANN  403 (860)
Q Consensus       329 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~---~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~  403 (860)
                      ..|.+.|...+... .+.........-+|+|||+.++   +...+|  .|.+.++.+++.... ....+......|+|||
T Consensus       165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG  242 (428)
T PRK01029        165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRK  242 (428)
T ss_pred             ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCC
Confidence            46777777655433 2333445567789999997532   343333  577888887754433 3344555678999999


Q ss_pred             CEEEEEeC-CC----cEEEEEcccc--ceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCC--eEEEEECCC-CceEEEe
Q 038577          404 HSLLSASL-DG----TVRAWDLFRY--RNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSF--EIFVWSMKT-GRLLDIL  473 (860)
Q Consensus       404 ~~l~s~~~-dg----~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~i~v~d~~~-~~~~~~~  473 (860)
                      +.|+..+. +|    .+..|++..+  ...+.+...........+|+|||+.|+..+..++  .|+++++.. +.....+
T Consensus       243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l  322 (428)
T PRK01029        243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL  322 (428)
T ss_pred             CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence            88886553 23    3444676653  2223333222223356799999998887764333  466666542 3334445


Q ss_pred             cCcccCeEEEEEcCCCCEEEEEeCC---CcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeC---CCeEEEEe
Q 038577          474 SGHEGPVHGLVFSPTNATLASSSWD---KTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTL---DGQIHFWD  547 (860)
Q Consensus       474 ~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd  547 (860)
                      ..+...+....|||||+.|+..+.+   ..|.+||+.+++. ..+......+....|+|||++|+....   ...|+++|
T Consensus       323 t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd  401 (428)
T PRK01029        323 TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLIS  401 (428)
T ss_pred             ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe-EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence            5455677889999999999877653   3699999988863 333333446778999999998876543   35689999


Q ss_pred             CCCCceeEEE
Q 038577          548 PLNGELMYTI  557 (860)
Q Consensus       548 ~~~~~~~~~~  557 (860)
                      +.+++.....
T Consensus       402 l~~g~~~~Lt  411 (428)
T PRK01029        402 LITKKTRKIV  411 (428)
T ss_pred             CCCCCEEEee
Confidence            9887654444

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=1e-11  Score=133.22  Aligned_cols=233  Identities=14%  Similarity=0.152  Sum_probs=151.6

Q ss_pred             cEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEe----CCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEc
Q 038577           75 RCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGT----GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWS  150 (860)
Q Consensus        75 ~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  150 (860)
                      .|.++|...+.......+...+...+|||||+.||...    ...|.+|++.+++.        ..+....+.+...+|+
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--------~~l~~~~g~~~~~~~S  251 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--------EQITNFEGLNGAPAWS  251 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--------EEccCCCCCcCCeEEC
Confidence            47888888666555556778899999999999998872    24799999988763        3334344556679999


Q ss_pred             CCCCeEEE-eecCC--eEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcC-Cc--cEEEeeec
Q 038577          151 PDSNYLLV-GSKDL--AVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR-DC--YMFSWGFS  224 (860)
Q Consensus       151 ~d~~~l~s-~~~dg--~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~-dg--~i~~w~~~  224 (860)
                      |||+.|+. ...+|  .|.+||+.++       ....+..+........|+||++     .++..+. +|  .|+++++.
T Consensus       252 pDG~~la~~~~~~g~~~Iy~~d~~~~-------~~~~lt~~~~~~~~~~~spDg~-----~i~f~s~~~g~~~iy~~d~~  319 (430)
T PRK00178        252 PDGSKLAFVLSKDGNPEIYVMDLASR-------QLSRVTNHPAIDTEPFWGKDGR-----TLYFTSDRGGKPQIYKVNVN  319 (430)
T ss_pred             CCCCEEEEEEccCCCceEEEEECCCC-------CeEEcccCCCCcCCeEECCCCC-----EEEEEECCCCCceEEEEECC
Confidence            99998874 44444  5777788766       2334555555666789999998     7665553 44  46666655


Q ss_pred             CCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcC-C--eEEEEECCCceeEEE
Q 038577          225 GNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSN-G--VFGLYQMPDFVCIHL  301 (860)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-g--~i~~~~~~~~~~~~~  301 (860)
                      ++..                     ...      .+.  ........|+|+|+.++..... +  .|.++|+.+++... 
T Consensus       320 ~g~~---------------------~~l------t~~--~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-  369 (430)
T PRK00178        320 GGRA---------------------ERV------TFV--GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-  369 (430)
T ss_pred             CCCE---------------------EEe------ecC--CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-
Confidence            4321                     000      011  1123456899999999877654 3  58888988776433 


Q ss_pred             EeecCceeEEEEEeeCCCEEEEEEccCCc--EEEEEccCceEEEEecCcccCeEEEEEcC
Q 038577          302 LSISREKITTAVFNELGNWLVFGCAKLGQ--LLVWEWRSESYILKQQGHYFDVNCLAYSP  359 (860)
Q Consensus       302 ~~~~~~~i~~~~~s~~~~~l~~~~~~~g~--i~v~d~~~~~~~~~~~~~~~~v~~~~~s~  359 (860)
                      +... .......|+|||+.++++....|.  +.+++...+ ....+..+.+.+...+|+|
T Consensus       370 lt~~-~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        370 LTDT-SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-VRLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCCCCCcCCCccCC
Confidence            3222 122356899999999998876544  556666433 3333444455566667766

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=1.1e-11  Score=131.75  Aligned_cols=233  Identities=13%  Similarity=0.084  Sum_probs=149.7

Q ss_pred             cEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEe----CCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEc
Q 038577           75 RCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGT----GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWS  150 (860)
Q Consensus        75 ~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  150 (860)
                      .+.++|...............+.+.+|||||+.|+...    ...|++||+.+++.        ..+....+.....+|+
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--------~~lt~~~g~~~~~~wS  270 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--------EKVTSFPGINGAPRFS  270 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--------EEecCCCCCcCCeeEC
Confidence            67777877665544455778899999999999999872    23699999988762        2233233344578999


Q ss_pred             CCCCeEEE-eecCCe--EEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEc-CCcc--EEEeeec
Q 038577          151 PDSNYLLV-GSKDLA--VRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIA-RDCY--MFSWGFS  224 (860)
Q Consensus       151 ~d~~~l~s-~~~dg~--v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~-~dg~--i~~w~~~  224 (860)
                      |||+.|+. .+.++.  |.+||+.++       ....+..+........|+||++     .|+..+ .++.  ++++++.
T Consensus       271 PDG~~La~~~~~~g~~~Iy~~dl~tg-------~~~~lt~~~~~~~~p~wSpDG~-----~I~f~s~~~g~~~Iy~~dl~  338 (448)
T PRK04792        271 PDGKKLALVLSKDGQPEIYVVDIATK-------ALTRITRHRAIDTEPSWHPDGK-----SLIFTSERGGKPQIYRVNLA  338 (448)
T ss_pred             CCCCEEEEEEeCCCCeEEEEEECCCC-------CeEECccCCCCccceEECCCCC-----EEEEEECCCCCceEEEEECC
Confidence            99998875 455665  666677655       2344555555667789999998     776554 3444  4445554


Q ss_pred             CCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcC-C--eEEEEECCCceeEEE
Q 038577          225 GNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSN-G--VFGLYQMPDFVCIHL  301 (860)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-g--~i~~~~~~~~~~~~~  301 (860)
                      ++..                        ..   ..+.  .......+|+|+|+.++....+ +  .|.++|+.+++... 
T Consensus       339 ~g~~------------------------~~---Lt~~--g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-  388 (448)
T PRK04792        339 SGKV------------------------SR---LTFE--GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-  388 (448)
T ss_pred             CCCE------------------------EE---EecC--CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-
Confidence            4321                        00   0011  1123346899999998876553 3  46667877765432 


Q ss_pred             EeecCceeEEEEEeeCCCEEEEEEccCCc--EEEEEccCceEEEEecCcccCeEEEEEcC
Q 038577          302 LSISREKITTAVFNELGNWLVFGCAKLGQ--LLVWEWRSESYILKQQGHYFDVNCLAYSP  359 (860)
Q Consensus       302 ~~~~~~~i~~~~~s~~~~~l~~~~~~~g~--i~v~d~~~~~~~~~~~~~~~~v~~~~~s~  359 (860)
                      +... .......|+|||+.++++...+|.  +.+++. ++.....+..+.+.+...+|+|
T Consensus       389 lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        389 LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence            2222 122345899999999998876554  666676 4555555555556677778876

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.47  E-value=1.4e-10  Score=122.21  Aligned_cols=299  Identities=12%  Similarity=0.144  Sum_probs=195.1

Q ss_pred             CCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEE
Q 038577          275 GLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNC  354 (860)
Q Consensus       275 ~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~  354 (860)
                      .+..+++++.+|.+..+|..+++.+.............  ..++..+++++.+ |.+..+|..+++.+.+..... .+.+
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p--~v~~~~v~v~~~~-g~l~ald~~tG~~~W~~~~~~-~~~~  139 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGV--GADGGLVFVGTEK-GEVIALDAEDGKELWRAKLSS-EVLS  139 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccce--EEcCCEEEEEcCC-CEEEEEECCCCcEeeeeccCc-eeec
Confidence            36788999999999999999999887766554322222  2356667766554 999999999999887664322 2221


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceE-----EEEEeeCCCEEEEEeCCCcEEEEEccccceeeEe
Q 038577          355 LAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVT-----ALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTF  429 (860)
Q Consensus       355 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-----~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~  429 (860)
                      .... .+..++.++.+|.+..||..+|+.+..+........     ..... + ..++.+..++.+..+|..+++.....
T Consensus       140 ~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~  216 (377)
T TIGR03300       140 PPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQ  216 (377)
T ss_pred             CCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeee
Confidence            1111 245677788899999999999988877654332211     11121 2 36778888899999999998876544


Q ss_pred             eCCCCC---c---EEEEEECC--CCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcE
Q 038577          430 TTPSSR---Q---FVSLASDQ--SGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTV  501 (860)
Q Consensus       430 ~~~~~~---~---~~~~~~~~--~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i  501 (860)
                      ......   .   ...+.-+|  .+..+++++.++ .++.+|.++|+.+..... . .......  ++..++.++.||.+
T Consensus       217 ~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g-~l~a~d~~tG~~~W~~~~-~-~~~~p~~--~~~~vyv~~~~G~l  291 (377)
T TIGR03300       217 RVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQG-RVAALDLRSGRVLWKRDA-S-SYQGPAV--DDNRLYVTDADGVV  291 (377)
T ss_pred             ccccCCCCCchhhhhccCCccEEECCEEEEEEcCC-EEEEEECCCCcEEEeecc-C-CccCceE--eCCEEEEECCCCeE
Confidence            322110   0   00010111  355777777777 999999999988776552 1 1122222  46678888899999


Q ss_pred             EEEEccCCcceeEEcccCC-CeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCC
Q 038577          502 RLWNVFEGKGSVESFPHTH-DVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSS  580 (860)
Q Consensus       502 ~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  580 (860)
                      ..+|..+++.+........ ...+...  .+..+++++.+|.++++|..+|+.+..++.+...                 
T Consensus       292 ~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~-----------------  352 (377)
T TIGR03300       292 VALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSG-----------------  352 (377)
T ss_pred             EEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCc-----------------
Confidence            9999998875544422111 2222222  4668999999999999999999999988765421                 


Q ss_pred             CCcEEEEEEecCCCEEEEecCCCeEEEE
Q 038577          581 GKCFTTLCYSADGSYILAGGSSKYICMY  608 (860)
Q Consensus       581 ~~~i~~l~~s~~g~~l~~~~~dg~v~vw  608 (860)
                        ...+..+ .+ ..|+.++.||.|..|
T Consensus       353 --~~~sp~~-~~-~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       353 --IASPPVV-VG-DGLLVQTRDGDLYAF  376 (377)
T ss_pred             --cccCCEE-EC-CEEEEEeCCceEEEe
Confidence              0122222 23 358888899988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.47  E-value=1.7e-11  Score=131.77  Aligned_cols=230  Identities=14%  Similarity=0.086  Sum_probs=149.3

Q ss_pred             CcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEe----CCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEE
Q 038577           74 QRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGT----GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNW  149 (860)
Q Consensus        74 ~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  149 (860)
                      ..|.++|...+.......+...+...+|+|||++||.+.    ...|++||+.+++.        ..+..+.+.+.+++|
T Consensus       170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--------~~~~~~~~~~~~~~~  241 (417)
T TIGR02800       170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--------EKVASFPGMNGAPAF  241 (417)
T ss_pred             ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--------EEeecCCCCccceEE
Confidence            368888887555554455666799999999999999882    25899999988752        334445666778999


Q ss_pred             cCCCCeEEEe-ecCC--eEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcC-Cc--cEEEeee
Q 038577          150 SPDSNYLLVG-SKDL--AVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR-DC--YMFSWGF  223 (860)
Q Consensus       150 s~d~~~l~s~-~~dg--~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~-dg--~i~~w~~  223 (860)
                      +|||+.|+.. +.++  .|.+|++.++       ....+..+........|+||++     .|+..+. ++  .|+++++
T Consensus       242 spDg~~l~~~~~~~~~~~i~~~d~~~~-------~~~~l~~~~~~~~~~~~s~dg~-----~l~~~s~~~g~~~iy~~d~  309 (417)
T TIGR02800       242 SPDGSKLAVSLSKDGNPDIYVMDLDGK-------QLTRLTNGPGIDTEPSWSPDGK-----SIAFTSDRGGSPQIYMMDA  309 (417)
T ss_pred             CCCCCEEEEEECCCCCccEEEEECCCC-------CEEECCCCCCCCCCEEECCCCC-----EEEEEECCCCCceEEEEEC
Confidence            9999877654 4444  5888888765       2333444555555678999998     7776554 34  4666665


Q ss_pred             cCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCC---eEEEEECCCceeEE
Q 038577          224 SGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNG---VFGLYQMPDFVCIH  300 (860)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g---~i~~~~~~~~~~~~  300 (860)
                      .++..                             ..+...........|+|+++.++.+..++   .|.+|++.++... 
T Consensus       310 ~~~~~-----------------------------~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-  359 (417)
T TIGR02800       310 DGGEV-----------------------------RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-  359 (417)
T ss_pred             CCCCE-----------------------------EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-
Confidence            54311                             01112234466788999999999888776   8899998775433 


Q ss_pred             EEeecCceeEEEEEeeCCCEEEEEEccCCc--EEEEEccCceEEEEecCcccCeEEE
Q 038577          301 LLSISREKITTAVFNELGNWLVFGCAKLGQ--LLVWEWRSESYILKQQGHYFDVNCL  355 (860)
Q Consensus       301 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~--i~v~d~~~~~~~~~~~~~~~~v~~~  355 (860)
                      .+... .......|+|+|+.+++....++.  +.+.+.. +.....+..+.+.+..+
T Consensus       360 ~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~~~  414 (417)
T TIGR02800       360 VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVREP  414 (417)
T ss_pred             EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcCCC
Confidence            23222 234566899999999998876543  4444433 33333333333333333

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.46  E-value=1.6e-09  Score=102.72  Aligned_cols=293  Identities=13%  Similarity=0.153  Sum_probs=196.2

Q ss_pred             CCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCC---ccEEEeeecCCCCCCccccCCCC
Q 038577          162 DLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARD---CYMFSWGFSGNDGKIDETMEDSE  238 (860)
Q Consensus       162 dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~d---g~i~~w~~~~~~~~~~~~~~~~~  238 (860)
                      +.-|.+|++++....   .....+..+.+.++-++|+|+.+     +|+++..+   |.+..+.++....          
T Consensus        15 s~gI~v~~ld~~~g~---l~~~~~v~~~~nptyl~~~~~~~-----~LY~v~~~~~~ggvaay~iD~~~G----------   76 (346)
T COG2706          15 SQGIYVFNLDTKTGE---LSLLQLVAELGNPTYLAVNPDQR-----HLYVVNEPGEEGGVAAYRIDPDDG----------   76 (346)
T ss_pred             CCceEEEEEeCcccc---cchhhhccccCCCceEEECCCCC-----EEEEEEecCCcCcEEEEEEcCCCC----------
Confidence            567999999965222   22344556777889999999998     89988665   6777777775322          


Q ss_pred             CCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcC-CeEEEEECCC-ceeEE--EEeecCce------
Q 038577          239 PPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSN-GVFGLYQMPD-FVCIH--LLSISREK------  308 (860)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-g~i~~~~~~~-~~~~~--~~~~~~~~------  308 (860)
                                  ...........+  .+.+.+++++++++++++... |.|.++-+.. +....  ....|.+.      
T Consensus        77 ------------~Lt~ln~~~~~g--~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ  142 (346)
T COG2706          77 ------------RLTFLNRQTLPG--SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQ  142 (346)
T ss_pred             ------------eEEEeeccccCC--CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccc
Confidence                        222222333333  344889999999998877654 8999999864 32221  11222222      


Q ss_pred             ----eEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEec---CcccCeEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q 038577          309 ----ITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQ---GHYFDVNCLAYSPDSQLLATGAD-DNKVKVWTVSS  380 (860)
Q Consensus       309 ----i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~  380 (860)
                          +....+.|+++++++..-..-.|.+|++..+.......   ......+.+.|+|++++..+..+ +++|.+|..+.
T Consensus       143 ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~  222 (346)
T COG2706         143 ESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP  222 (346)
T ss_pred             cCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence                78899999999999987666789999999776543321   23445788999999998877665 88999999876


Q ss_pred             C-eeEEEeec---------CCCceEEEEEeeCCCEEEEEeC-CCcEEEEEccccce-eeEe--eCCCCCcEEEEEECCCC
Q 038577          381 G-FCFVTFTE---------HTNAVTALHFMANNHSLLSASL-DGTVRAWDLFRYRN-FRTF--TTPSSRQFVSLASDQSG  446 (860)
Q Consensus       381 ~-~~~~~~~~---------~~~~v~~i~~~~~~~~l~s~~~-dg~i~~wd~~~~~~-~~~~--~~~~~~~~~~~~~~~~~  446 (860)
                      . ..+..++.         ......+|.+++||++|.++.+ ...|.+|.+..... +..+  ..........+.+++.|
T Consensus       223 ~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g  302 (346)
T COG2706         223 AVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSG  302 (346)
T ss_pred             CCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCC
Confidence            3 22222221         2345678899999999988754 23677777754322 2221  22223336789999999


Q ss_pred             CEEEEEecCCCeEEEEECC--CCceEEEec-CcccCeEEEEEc
Q 038577          447 EVICAGTLDSFEIFVWSMK--TGRLLDILS-GHEGPVHGLVFS  486 (860)
Q Consensus       447 ~~l~~~~~~~~~i~v~d~~--~~~~~~~~~-~h~~~v~~l~~s  486 (860)
                      ++|+++.+++..|.+|...  +|++..... .......|+.|.
T Consensus       303 ~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         303 RFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             CEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            9999999988888888665  565544332 234445566653

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.43  E-value=6.6e-11  Score=109.91  Aligned_cols=278  Identities=14%  Similarity=0.159  Sum_probs=179.4

Q ss_pred             CCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCC------------CcEEEEEEccCCCCCccce
Q 038577          141 NDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHR------------DSVVGCFFSVDKKTDKVNR  208 (860)
Q Consensus       141 ~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~------------~~i~~~~~~~~~~~~~~~~  208 (860)
                      .+-|.++.|..+|.+||+|..+|.|.++.-+....+ .......++.|.            ..|..+.|.+++.   ...
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n---~a~  100 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG-EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGN---LAE  100 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeeccccccc-ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCC---ccE
Confidence            456899999999999999999999999987655221 111223344443            4577788887765   236


Q ss_pred             EEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCc---ceee----eEE-eeeeccccCCCCceEEEEecCCCCEEE
Q 038577          209 IYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPE---RRVK----KWG-LLRKDDFSQAPSKVTACDYHRGLDMVV  280 (860)
Q Consensus       209 l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~  280 (860)
                      ++..+.|.++++|.+.....++.........+......   ...+    ... ...+.....|...|.++.++.|...++
T Consensus       101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l  180 (433)
T KOG1354|consen  101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL  180 (433)
T ss_pred             EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe
Confidence            77788899999999987655442111111100000000   0000    001 112334456788899999999998877


Q ss_pred             EEEcCCeEEEEECCCcee---EEEEeec-----CceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEE------Ee-
Q 038577          281 VGFSNGVFGLYQMPDFVC---IHLLSIS-----REKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYIL------KQ-  345 (860)
Q Consensus       281 ~~~~~g~i~~~~~~~~~~---~~~~~~~-----~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~------~~-  345 (860)
                      ++ .|=.|.+|++.-...   +..++.+     ..-|++..|+|....++.-++..|+|++-|++......      .. 
T Consensus       181 SA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep  259 (433)
T KOG1354|consen  181 SA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEP  259 (433)
T ss_pred             ec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence            65 456789998863221   1122222     23588999999765555444455999999998432211      10 


Q ss_pred             ---------cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeeEEEeecCC------------Cce---EEEEEe
Q 038577          346 ---------QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVS-SGFCFVTFTEHT------------NAV---TALHFM  400 (860)
Q Consensus       346 ---------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~------------~~v---~~i~~~  400 (860)
                               ..--..|..+.|+++|+++++-+. -+|++||+. ..+++.++.-|.            ..|   ..++|+
T Consensus       260 edp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s  338 (433)
T KOG1354|consen  260 EDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS  338 (433)
T ss_pred             cCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc
Confidence                     111235788999999999998765 589999994 455666665442            222   457889


Q ss_pred             eCCCEEEEEeCCCcEEEEEccccc
Q 038577          401 ANNHSLLSASLDGTVRAWDLFRYR  424 (860)
Q Consensus       401 ~~~~~l~s~~~dg~i~~wd~~~~~  424 (860)
                      .++.++++|+....+++|++..+.
T Consensus       339 g~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  339 GNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             CCcceEecccccceEEEecCCCCc
Confidence            899999999999999999976554

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.42  E-value=3.2e-11  Score=112.05  Aligned_cols=331  Identities=17%  Similarity=0.236  Sum_probs=219.7

Q ss_pred             cceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccc
Q 038577          181 KPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDF  260 (860)
Q Consensus       181 ~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (860)
                      ....+.||.+.++....-|...     -+++.+.|.++++|--.....                      .|    ....
T Consensus        16 ll~~~eG~~d~vn~~~l~~~e~-----gv~~~s~drtvrv~lkrds~q----------------------~w----psI~   64 (404)
T KOG1409|consen   16 LLSKIEGSQDDVNAAILIPKEE-----GVISVSEDRTVRVWLKRDSGQ----------------------YW----PSIY   64 (404)
T ss_pred             hhhhhcCchhhhhhheeccCCC-----CeEEccccceeeeEEeccccc----------------------cC----chhh
Confidence            4566788999998888888777     899999999999996544221                      23    2223


Q ss_pred             cCCCCceEEEEecCCCCEEEEEEcCCeEEEEECC----CceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEE-
Q 038577          261 SQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMP----DFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWE-  335 (860)
Q Consensus       261 ~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~----~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d-  335 (860)
                      ...+.+++++.+.++...|++|..+|++.-+.+.    ....++....|...+..+.|+..-+++++.+.+ ..+ .|- 
T Consensus        65 ~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~d-k~~-~~hc  142 (404)
T KOG1409|consen   65 HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKD-KQF-AWHC  142 (404)
T ss_pred             hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccc-cce-EEEe
Confidence            3456789999999999999999999999998764    234455666788899999999988998888765 222 232 


Q ss_pred             ccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCC
Q 038577          336 WRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTV--SSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDG  413 (860)
Q Consensus       336 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg  413 (860)
                      .+.+..+..+.- ....+++.+.-.  +...|...|.|..-.+  ..-..+.++.+|.+.+.+++|.+....|.++..|.
T Consensus       143 ~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~  219 (404)
T KOG1409|consen  143 TESGNRLGGYNF-ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDH  219 (404)
T ss_pred             eccCCcccceEe-eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccC
Confidence            222221111100 000111111111  4455666666655544  34567788999999999999999999999999999


Q ss_pred             cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEE-e-------------------
Q 038577          414 TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDI-L-------------------  473 (860)
Q Consensus       414 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~-~-------------------  473 (860)
                      .+.+||+.-.+........+...+..+..-+--+.+.+++.|+ .|.+|+++..+.... .                   
T Consensus       220 ~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg-~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~  298 (404)
T KOG1409|consen  220 SVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDG-GIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQ  298 (404)
T ss_pred             ceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCC-eEEEEeccceeecCccccccchhhhhCchHHHHHHH
Confidence            9999999877776666666666777777777778888888888 899999874422110 0                   


Q ss_pred             ---------cCc-----ccCeEEEEEcCCCCEEEEEeCCCcEEEEE--------ccCCcceeEEcccCCCeEEEEEeeCC
Q 038577          474 ---------SGH-----EGPVHGLVFSPTNATLASSSWDKTVRLWN--------VFEGKGSVESFPHTHDVLTVVYRPDG  531 (860)
Q Consensus       474 ---------~~h-----~~~v~~l~~s~~~~~l~s~~~dg~i~iwd--------~~~~~~~~~~~~~~~~v~~~~~s~~~  531 (860)
                               +.|     ...|...+ +.+.....+.+..=.+|+-|        ... .++.....-...|+.+.+...-
T Consensus       299 m~~~k~~glr~h~crkcg~avc~~c-~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~-t~LA~phei~tgItamhlqetl  376 (404)
T KOG1409|consen  299 MWDRKQLGLRQHHCRKCGKAVCGKC-SSNRSSYPTMGFEFSVRVCDSCYPTIKDEER-TPLAIPHEIKTGITAMHLQETL  376 (404)
T ss_pred             HHhhhhhhhhhhhhhhhhhhcCccc-ccCccccccccceeEEEEecccchhhhcCCC-CccccccccccceeEEEhhhhc
Confidence                     001     01111111 11111122222223344433        222 1233333445678999998888


Q ss_pred             CEEEEEeCCCeEEEEeCCC
Q 038577          532 RQLACSTLDGQIHFWDPLN  550 (860)
Q Consensus       532 ~~l~~~~~dg~i~iwd~~~  550 (860)
                      .+|++++.|..|+|||+..
T Consensus       377 glLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  377 GLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             cceeecCCceEEEEEechh
Confidence            8999999999999999853

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.41  E-value=1e-09  Score=115.65  Aligned_cols=293  Identities=12%  Similarity=0.074  Sum_probs=190.7

Q ss_pred             eEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCe
Q 038577          208 RIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGV  287 (860)
Q Consensus       208 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~  287 (860)
                      .+++++.+|.+..+|..++..                      .|..........      ..  ..++..+++++.+|.
T Consensus        67 ~v~v~~~~g~v~a~d~~tG~~----------------------~W~~~~~~~~~~------~p--~v~~~~v~v~~~~g~  116 (377)
T TIGR03300        67 KVYAADADGTVVALDAETGKR----------------------LWRVDLDERLSG------GV--GADGGLVFVGTEKGE  116 (377)
T ss_pred             EEEEECCCCeEEEEEccCCcE----------------------eeeecCCCCccc------ce--EEcCCEEEEEcCCCE
Confidence            799999999999999887654                      675443322111      11  124678889999999


Q ss_pred             EEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeE-----EEEEcCCCC
Q 038577          288 FGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVN-----CLAYSPDSQ  362 (860)
Q Consensus       288 i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~-----~~~~s~~~~  362 (860)
                      +..+|..+++.+...............  .+..+++... +|.+..+|.++++.+.+.........     +....  +.
T Consensus       117 l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~-~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~  191 (377)
T TIGR03300       117 VIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTN-DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DG  191 (377)
T ss_pred             EEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECC-CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CC
Confidence            999999999988766544322111112  2445555544 49999999999998877644322111     11111  24


Q ss_pred             EEEEEeCCCcEEEEECCCCeeEEEeecCCC----c------e-EEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeC
Q 038577          363 LLATGADDNKVKVWTVSSGFCFVTFTEHTN----A------V-TALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTT  431 (860)
Q Consensus       363 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~------v-~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~  431 (860)
                      .++.+..+|.+..+|..+|+.+........    .      + ....+  .+..++.++.+|.+..||..+++.......
T Consensus       192 ~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~  269 (377)
T TIGR03300       192 GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDA  269 (377)
T ss_pred             EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeecc
Confidence            677888889999999999987654321100    0      0 01111  245788888899999999999887765543


Q ss_pred             CCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCccc-CeEEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 038577          432 PSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEG-PVHGLVFSPTNATLASSSWDKTVRLWNVFEGK  510 (860)
Q Consensus       432 ~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~  510 (860)
                      ...   ...  ...+..++++..++ .++.+|..+|+.+........ .......  .+..+++++.+|.++++|..+++
T Consensus       270 ~~~---~~p--~~~~~~vyv~~~~G-~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~  341 (377)
T TIGR03300       270 SSY---QGP--AVDDNRLYVTDADG-VVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGS  341 (377)
T ss_pred             CCc---cCc--eEeCCEEEEECCCC-eEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCC
Confidence            221   111  23466777777777 999999999988765532211 2222222  46788999999999999999998


Q ss_pred             ceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEE
Q 038577          511 GSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFW  546 (860)
Q Consensus       511 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  546 (860)
                      .......+...+..--...++ .|++++.||.|+.|
T Consensus       342 ~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~  376 (377)
T TIGR03300       342 FVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAF  376 (377)
T ss_pred             EEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEe
Confidence            776665555443332222344 58888999998876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.32  E-value=2.7e-10  Score=114.41  Aligned_cols=203  Identities=19%  Similarity=0.189  Sum_probs=151.4

Q ss_pred             eEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEE----ecCCCCEEEEEE
Q 038577          208 RIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACD----YHRGLDMVVVGF  283 (860)
Q Consensus       208 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~l~~~~  283 (860)
                      +++....||.+++|+...+..........     ..........|.+.....    +....+..    .+-+...++.|.
T Consensus         7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~-----~~s~t~~~~~w~L~~~~s----~~k~~~~~~~~~~s~~t~~lvlgt   77 (541)
T KOG4547|consen    7 YFALSTGDGRLRIWDTAKNQLQQEFAPIA-----SLSGTCTYTKWGLSADYS----PMKWLSLEKAKKASLDTSMLVLGT   77 (541)
T ss_pred             eEeecCCCCeEEEEEccCceeeeeeccch-----hccCcceeEEEEEEeccc----hHHHHhHHHHhhccCCceEEEeec
Confidence            89999999999999998875532222111     111112223454322110    00111111    133456788999


Q ss_pred             cCCeEEEEECCCceeEEEEe--ecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCC
Q 038577          284 SNGVFGLYQMPDFVCIHLLS--ISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDS  361 (860)
Q Consensus       284 ~~g~i~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~  361 (860)
                      ..|.|.+|+...++....+.  .|.+.+.++.++.+-..+.+++.+ +.+..|+...+..++.+......+.+++++|||
T Consensus        78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad-~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~  156 (541)
T KOG4547|consen   78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGAD-LKVVYILEKEKVIIRIWKEQKPLVSSLCISPDG  156 (541)
T ss_pred             CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCc-eeEEEEecccceeeeeeccCCCccceEEEcCCC
Confidence            99999999999999888776  467788988888887777777665 999999999999999999888899999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeC-----CCEEE-EEeCCCcEEEEEccc
Q 038577          362 QLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMAN-----NHSLL-SASLDGTVRAWDLFR  422 (860)
Q Consensus       362 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-----~~~l~-s~~~dg~i~~wd~~~  422 (860)
                      ..+++++  +.|++||+++++.+..|.+|.++|.++.|..+     |.+++ +...+..+.+|-+..
T Consensus       157 ~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  157 KILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            9999987  58999999999999999999999999999876     55555 444566677887654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=2e-09  Score=112.47  Aligned_cols=208  Identities=7%  Similarity=-0.049  Sum_probs=135.1

Q ss_pred             CeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCE-EEEEcC---CCcEEEEEcccCeEEEEeecCCceeEEEECCCCCE
Q 038577           32 NRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTF-LLTVDE---NQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKY  107 (860)
Q Consensus        32 ~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~-la~~~~---d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~  107 (860)
                      ..|.+-|......+.+..+ . .+....|||||+. ++..+.   +..|.++|+.+++.......++.....+|||||+.
T Consensus       169 ~~l~~~d~dg~~~~~~~~~-~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~  246 (419)
T PRK04043        169 SNIVLADYTLTYQKVIVKG-G-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSK  246 (419)
T ss_pred             ceEEEECCCCCceeEEccC-C-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCE
Confidence            3688888876665555533 3 7789999999985 665433   36799999999887766666677778899999998


Q ss_pred             EEEE----eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeec-CC--eEEEEeecccccCcccc
Q 038577          108 IAVG----TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSK-DL--AVRLFYVKEKLKGIHTN  180 (860)
Q Consensus       108 la~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~-dg--~v~vwd~~~~~~~~~~~  180 (860)
                      |+..    .+..|+++|+.+++        ...+..+.+......|+|||+.|+..+. .+  .|.+.|+.++      .
T Consensus       247 la~~~~~~g~~~Iy~~dl~~g~--------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g------~  312 (419)
T PRK04043        247 LLLTMAPKGQPDIYLYDTNTKT--------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG------S  312 (419)
T ss_pred             EEEEEccCCCcEEEEEECCCCc--------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC------C
Confidence            8876    34688899988775        2445545444456789999998887664 23  5777777665      1


Q ss_pred             cceEeecCCCcEEEEEEccCCCCCccceEEEEcCC---------ccEEEeeecCCCCCCccccCCCCCCCCCCCcceeee
Q 038577          181 KPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARD---------CYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKK  251 (860)
Q Consensus       181 ~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~d---------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (860)
                      . ..+......  ...|+|||+     .++..+..         ..|.+.+++++..                       
T Consensus       313 ~-~rlt~~g~~--~~~~SPDG~-----~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-----------------------  361 (419)
T PRK04043        313 V-EQVVFHGKN--NSSVSTYKN-----YIVYSSRETNNEFGKNTFNLYLISTNSDYI-----------------------  361 (419)
T ss_pred             e-EeCccCCCc--CceECCCCC-----EEEEEEcCCCcccCCCCcEEEEEECCCCCe-----------------------
Confidence            1 111111111  248999999     77766543         2466666655421                       


Q ss_pred             EEeeeeccccCCCCceEEEEecCCCCEEEEEEcC---CeEEEEEC
Q 038577          252 WGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSN---GVFGLYQM  293 (860)
Q Consensus       252 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---g~i~~~~~  293 (860)
                       ..     +... .......|+|||+.++.....   ..+.+.++
T Consensus       362 -~~-----LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l  399 (419)
T PRK04043        362 -RR-----LTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRL  399 (419)
T ss_pred             -EE-----CCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEec
Confidence             11     1111 122357899999988876543   23555566

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.27  E-value=9.5e-09  Score=119.72  Aligned_cols=240  Identities=13%  Similarity=0.146  Sum_probs=166.8

Q ss_pred             EEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecC--------------cccCeEEEEEcCCCCEEEEEeC-CCcEE
Q 038577          310 TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQG--------------HYFDVNCLAYSPDSQLLATGAD-DNKVK  374 (860)
Q Consensus       310 ~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~--------------~~~~v~~~~~s~~~~~l~~~~~-dg~i~  374 (860)
                      ..+++++++..++++...++.|.++|..... +..+.+              +......+++.++++.|+++.. .+.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            4688888777777777777999999976543 333321              1123578999998887666554 56799


Q ss_pred             EEECCCCeeEEEeecC-----------------CCceEEEEEee-CCCEEEEEeCCCcEEEEEccccceeeEeeCC----
Q 038577          375 VWTVSSGFCFVTFTEH-----------------TNAVTALHFMA-NNHSLLSASLDGTVRAWDLFRYRNFRTFTTP----  432 (860)
Q Consensus       375 iwd~~~~~~~~~~~~~-----------------~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~----  432 (860)
                      ++|..++.. .++.+.                 -.....++++| ++..+++.+.++.|++||..++.... +...    
T Consensus       650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~  727 (1057)
T PLN02919        650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYER  727 (1057)
T ss_pred             EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccc
Confidence            999876643 333110                 12356899999 56666777788899999987664321 1100    


Q ss_pred             ----------CCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC---------------------cccCeE
Q 038577          433 ----------SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG---------------------HEGPVH  481 (860)
Q Consensus       433 ----------~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~---------------------h~~~v~  481 (860)
                                .-.....++++|++..|+++..+++.|++||+.++.......+                     ......
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence                      1123567999999998877777766999999987653221100                     011346


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcc--------------cCCCeEEEEEeeCCCEEEEEeCCCeEEEEe
Q 038577          482 GLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFP--------------HTHDVLTVVYRPDGRQLACSTLDGQIHFWD  547 (860)
Q Consensus       482 ~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  547 (860)
                      +++++++|..+++-+.++.|++||..++... ...+              .-.....++++++|+++++-+.++.|++||
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid  886 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD  886 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEECCCCeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence            8999999998888888999999999876532 2221              123567899999999888888899999999


Q ss_pred             CCCCce
Q 038577          548 PLNGEL  553 (860)
Q Consensus       548 ~~~~~~  553 (860)
                      +.+++.
T Consensus       887 ~~~~~~  892 (1057)
T PLN02919        887 LNKGEA  892 (1057)
T ss_pred             CCCCcc
Confidence            998875

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.24  E-value=1.9e-08  Score=92.60  Aligned_cols=255  Identities=17%  Similarity=0.159  Sum_probs=146.8

Q ss_pred             EEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEee---ccCCCeEEEEEcCCCCeEEEeecCCeEEEEeeccccc
Q 038577           99 ILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLA---DCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLK  175 (860)
Q Consensus        99 ~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~  175 (860)
                      ++.++||++||+..|..|.|-.....-..     .+.+..   .....=..++||||+..||.+...|+|+++|+... .
T Consensus         3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~s-----i~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~   76 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQCIEIRSAKDDFSS-----IIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-E   76 (282)
T ss_pred             eeecCCCcEEEEEeccEEEEEeccCCchh-----eeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-e
Confidence            67789999999999999998776654321     112222   22334578999999999999999999999999865 1


Q ss_pred             CcccccceEee-cCCCcEEEEEEccCCCCC-ccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEE
Q 038577          176 GIHTNKPFLLL-GHRDSVVGCFFSVDKKTD-KVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWG  253 (860)
Q Consensus       176 ~~~~~~~~~~~-~h~~~i~~~~~~~~~~~~-~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (860)
                      ........... .-...|.++.|.+..... ....|++...+|.++-+-+..+..                     ..+.
T Consensus        77 lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~---------------------q~y~  135 (282)
T PF15492_consen   77 LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTN---------------------QGYQ  135 (282)
T ss_pred             eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccC---------------------Ccce
Confidence            11001111111 123567777776543211 123677777888888777643221                     0111


Q ss_pred             eeee-ccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEE-EEEccC---
Q 038577          254 LLRK-DDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLV-FGCAKL---  328 (860)
Q Consensus       254 ~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~~~---  328 (860)
                      .... ......+..|.++.++|..++|++|+....=      ++.    -......+++-..-.+..+.. +...++   
T Consensus       136 e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~------~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~  205 (282)
T PF15492_consen  136 ENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQ------DGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDIT  205 (282)
T ss_pred             eeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCC------Ccc----ccccccCceEEEEcCCCCcEEEccccCcccc
Confidence            1111 1122346689999999999998887754220      000    000001111111111111111 001110   


Q ss_pred             ---CcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecC
Q 038577          329 ---GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEH  390 (860)
Q Consensus       329 ---g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  390 (860)
                         ....+|.+-+.+...........|..|..||||+.||+...+|.|.+|++.+-+.......+
T Consensus       206 ~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  206 ASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             ccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence               11233333333332222335667999999999999999999999999999887776665433

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.23  E-value=1.7e-08  Score=92.95  Aligned_cols=242  Identities=11%  Similarity=0.131  Sum_probs=143.8

Q ss_pred             EEEe-CCCEEEeeeCCeEEEEECCCCcE-----EeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee
Q 038577           18 AVLS-QNTKLISPVGNRVSVTDLIKSKT-----VTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR   91 (860)
Q Consensus        18 ~~~s-dg~~l~~~~~~~i~v~d~~~~~~-----~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~   91 (860)
                      ++.+ ||+.||.-.+..|.|-..+..-.     ...+..-...-+.++||||+.+||.+...|+|.++|+.. ..+..+.
T Consensus         3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~   81 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIP   81 (282)
T ss_pred             eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcC
Confidence            4567 99999999999999987765422     123333345568999999999999999999999999875 4444443


Q ss_pred             --------cCCceeEEEECCCC-------CEEEEEeCCeEEEEeCCCCCcccceeEEEEE--eec-cCCCeEEEEEcCCC
Q 038577           92 --------FKYPVNAILFSPNG-------KYIAVGTGKLVQIWRSPGFKKEVFAFELIRT--LAD-CNDKVTALNWSPDS  153 (860)
Q Consensus        92 --------~~~~v~~~~fspdg-------~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~--~~~-h~~~v~~l~~s~d~  153 (860)
                              ....|..+.|-+-.       ++|+....|.++=|-+..+...  .++....  +.. +...|.++.|+|..
T Consensus        82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q--~y~e~hsfsf~~~yp~Gi~~~vy~p~h  159 (282)
T PF15492_consen   82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQ--GYQENHSFSFSSHYPHGINSAVYHPKH  159 (282)
T ss_pred             cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCC--cceeeEEEEecccCCCceeEEEEcCCC
Confidence                    23557777785532       5677778888887776433211  1112222  333 47789999999999


Q ss_pred             CeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccc
Q 038577          154 NYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDET  233 (860)
Q Consensus       154 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~  233 (860)
                      ++|++||....      +.+          .-......+++-....+...   ...++...|+....=            
T Consensus       160 ~LLlVgG~~~~------~~~----------~s~a~~~GLtaWRiL~~~Py---yk~v~~~~~~~~~~~------------  208 (282)
T PF15492_consen  160 RLLLVGGCEQN------QDG----------MSKASSCGLTAWRILSDSPY---YKQVTSSEDDITASS------------  208 (282)
T ss_pred             CEEEEeccCCC------CCc----------cccccccCceEEEEcCCCCc---EEEccccCccccccc------------
Confidence            98888764321      000          00001111111111111110   001111111110000            


Q ss_pred             cCCCCCCCCCCCcceeeeEEeeee---ccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecC
Q 038577          234 MEDSEPPSPGTPERRVKKWGLLRK---DDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISR  306 (860)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~  306 (860)
                                   .....|++...   .........|..|..+|||..|++...+|.|.+|++++...........
T Consensus       209 -------------~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e  271 (282)
T PF15492_consen  209 -------------KRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE  271 (282)
T ss_pred             -------------cccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence                         00011111111   1113356789999999999999999999999999999888776665443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.23  E-value=1.8e-08  Score=117.46  Aligned_cols=254  Identities=17%  Similarity=0.198  Sum_probs=164.7

Q ss_pred             EEEEEcCC-CCEEEEEeCCCcEEEEECCCCeeEEEeec--------------CCCceEEEEEeeCCCEEEEEe-CCCcEE
Q 038577          353 NCLAYSPD-SQLLATGADDNKVKVWTVSSGFCFVTFTE--------------HTNAVTALHFMANNHSLLSAS-LDGTVR  416 (860)
Q Consensus       353 ~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------~~~~v~~i~~~~~~~~l~s~~-~dg~i~  416 (860)
                      ..++++++ +..+++-..++.|++||.. +..+..+..              .-.....++++++++.|+.+. ..+.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            46788875 5566666778899999976 444433322              112468899999887666554 456799


Q ss_pred             EEEccccceeeEeeCC----------------CCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC-----
Q 038577          417 AWDLFRYRNFRTFTTP----------------SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG-----  475 (860)
Q Consensus       417 ~wd~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~-----  475 (860)
                      .+|+.++.. .++...                .-.....++++|++..++++..+++.|++||..++.... +.+     
T Consensus       650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~  727 (1057)
T PLN02919        650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYER  727 (1057)
T ss_pred             EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccc
Confidence            999876543 222110                011346789999666666665555599999998765432 211     


Q ss_pred             ----------cccCeEEEEEcCCCCEEE-EEeCCCcEEEEEccCCcceeEEc------------c---------cCCCeE
Q 038577          476 ----------HEGPVHGLVFSPTNATLA-SSSWDKTVRLWNVFEGKGSVESF------------P---------HTHDVL  523 (860)
Q Consensus       476 ----------h~~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~------------~---------~~~~v~  523 (860)
                                .......++++|+++.|+ +-+.++.|++||+.++.......            +         ......
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence                      112356799999998554 55567899999998764221110            0         011246


Q ss_pred             EEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCC
Q 038577          524 TVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSK  603 (860)
Q Consensus       524 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg  603 (860)
                      .++++++|.++++-..++.|++||..++...... +... .+..   +  .......-.....++++++|+.+++-+.++
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tia-G~G~-~G~~---d--G~~~~a~l~~P~GIavd~dG~lyVaDt~Nn  880 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLA-GTGK-AGFK---D--GKALKAQLSEPAGLALGENGRLFVADTNNS  880 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEe-ccCC-cCCC---C--CcccccccCCceEEEEeCCCCEEEEECCCC
Confidence            8899999998888888999999999887665432 2110 0000   0  000111123478999999999989888999


Q ss_pred             eEEEEECCCceEE
Q 038577          604 YICMYDVADQVLL  616 (860)
Q Consensus       604 ~v~vwd~~~~~~~  616 (860)
                      .|++||+.+++..
T Consensus       881 ~Irvid~~~~~~~  893 (1057)
T PLN02919        881 LIRYLDLNKGEAA  893 (1057)
T ss_pred             EEEEEECCCCccc
Confidence            9999999998753

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.22  E-value=3.4e-08  Score=104.33  Aligned_cols=303  Identities=11%  Similarity=0.065  Sum_probs=189.4

Q ss_pred             CCCEEEEEEcCCeEEEEECCCceeEEEEeecCce-e--------EEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEe
Q 038577          275 GLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREK-I--------TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ  345 (860)
Q Consensus       275 ~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~-i--------~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~  345 (860)
                      .+..+++++.+|.+.-+|..+++.+......... .        ..-...-++..+++++.+ |.+..+|.++|+.+.+.
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~-g~l~ald~~tG~~~W~~  146 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEK-GQVYALNAEDGEVAWQT  146 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCC-CEEEEEECCCCCCcccc
Confidence            3668888889999999999999988766543310 0        000011234556665544 99999999999988876


Q ss_pred             cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCce-----EEEEEeeCCCEEEEEeCCCcEEEEEc
Q 038577          346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAV-----TALHFMANNHSLLSASLDGTVRAWDL  420 (860)
Q Consensus       346 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~i~~~~~~~~l~s~~~dg~i~~wd~  420 (860)
                      ........+...  .+..++++..+|.+..+|..+|+.+..........     .+...  .+..++.++.+|.+..+|.
T Consensus       147 ~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~  222 (394)
T PRK11138        147 KVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM  222 (394)
T ss_pred             cCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence            543221111112  23467778888999999999999887765321111     11111  1235777788999999999


Q ss_pred             cccceeeEeeCCCCCc------EEEEEECC--CCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEE
Q 038577          421 FRYRNFRTFTTPSSRQ------FVSLASDQ--SGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATL  492 (860)
Q Consensus       421 ~~~~~~~~~~~~~~~~------~~~~~~~~--~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l  492 (860)
                      .+++............      ...+..+|  .+..+++++.++ .++.+|..+|+.+....-  +....+..  .+..+
T Consensus       223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g-~l~ald~~tG~~~W~~~~--~~~~~~~~--~~~~v  297 (394)
T PRK11138        223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNG-NLVALDLRSGQIVWKREY--GSVNDFAV--DGGRI  297 (394)
T ss_pred             cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCC-eEEEEECCCCCEEEeecC--CCccCcEE--ECCEE
Confidence            9888766543221100      00111122  245666667776 899999999988765431  11122222  46677


Q ss_pred             EEEeCCCcEEEEEccCCcceeEEcccC-CCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccc
Q 038577          493 ASSSWDKTVRLWNVFEGKGSVESFPHT-HDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTD  571 (860)
Q Consensus       493 ~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  571 (860)
                      +.++.+|.+..+|..+++......... ....+...  .+.+|++++.+|.++++|..+|+.+...+.....        
T Consensus       298 y~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~--------  367 (394)
T PRK11138        298 YLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSG--------  367 (394)
T ss_pred             EEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCc--------
Confidence            888889999999999887544332211 11222222  2457888999999999999999998877643210        


Q ss_pred             cccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEEC
Q 038577          572 RRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV  610 (860)
Q Consensus       572 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~  610 (860)
                                 ......+  .+..|+.++.||.|+.+++
T Consensus       368 -----------~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        368 -----------FLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             -----------ceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence                       0111122  2457888899999888765

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=2.9e-08  Score=103.94  Aligned_cols=214  Identities=8%  Similarity=-0.003  Sum_probs=137.6

Q ss_pred             CeEEEEECCCceeEEEEeecCceeEEEEEeeCCCE-EEEEEcc--CCcEEEEEccCceEEEEecCcccCeEEEEEcCCCC
Q 038577          286 GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNW-LVFGCAK--LGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQ  362 (860)
Q Consensus       286 g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~~--~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~  362 (860)
                      ..|.+-|.... ..+.+.... ......|+|||+. ++++...  ...|.++|+.+++...... ..+......|+|||+
T Consensus       169 ~~l~~~d~dg~-~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~  245 (419)
T PRK04043        169 SNIVLADYTLT-YQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS  245 (419)
T ss_pred             ceEEEECCCCC-ceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence            35555555333 333333333 7788999999986 6554443  3679999998876554433 444566788999998


Q ss_pred             EEEEEeC---CCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeC-CC--cEEEEEccccceeeEeeCCCCCc
Q 038577          363 LLATGAD---DNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASL-DG--TVRAWDLFRYRNFRTFTTPSSRQ  436 (860)
Q Consensus       363 ~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~~~  436 (860)
                      .++....   +..|.++++.++... .+..+........|+|||+.|+..+. .+  .|.+.|+.+++..+...... . 
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~-  322 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-N-  322 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC-c-
Confidence            7765432   346888888777643 44444443445689999987776653 33  57777887766544332221 1 


Q ss_pred             EEEEEECCCCCEEEEEecCC--------CeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCC-C--cEEEEE
Q 038577          437 FVSLASDQSGEVICAGTLDS--------FEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWD-K--TVRLWN  505 (860)
Q Consensus       437 ~~~~~~~~~~~~l~~~~~~~--------~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g--~i~iwd  505 (860)
                        ...++|+|+.++......        ..|++.|+.++.... +... +......|+|||+.++..+.+ +  .+.+.+
T Consensus       323 --~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~  398 (419)
T PRK04043        323 --NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIR  398 (419)
T ss_pred             --CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence              248999999998876542        378999998887543 3322 233458899999988776643 2  355666


Q ss_pred             ccCC
Q 038577          506 VFEG  509 (860)
Q Consensus       506 ~~~~  509 (860)
                      +...
T Consensus       399 l~g~  402 (419)
T PRK04043        399 LNYN  402 (419)
T ss_pred             cCCC
Confidence            6544

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.19  E-value=1e-10  Score=131.11  Aligned_cols=226  Identities=16%  Similarity=0.229  Sum_probs=179.0

Q ss_pred             CEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEE
Q 038577          362 QLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLA  441 (860)
Q Consensus       362 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  441 (860)
                      +.+.....++...-|..+.+...  +..+-..|.++.-+|...+.++|+.||.+++|....+..+..+.......++.+.
T Consensus      2181 ~~~~~~n~~~~~~tq~~~~~~~~--~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~ 2258 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASVM--IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSR 2258 (2439)
T ss_pred             ccCCcccCCccccceecccceeE--eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhh
Confidence            34444444555555554333222  2335567888888888889999999999999999999999988888778999999


Q ss_pred             ECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEe---CCCcEEEEEccCCcc-eeEEcc
Q 038577          442 SDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSS---WDKTVRLWNVFEGKG-SVESFP  517 (860)
Q Consensus       442 ~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~---~dg~i~iwd~~~~~~-~~~~~~  517 (860)
                      |+.+|+...++..|| .+.+|... .++....+.|.....++.|-.  ..+++++   .++.+.+||..-... -.....
T Consensus      2259 f~~qGnk~~i~d~dg-~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~ 2334 (2439)
T KOG1064|consen 2259 FNHQGNKFGIVDGDG-DLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTC 2334 (2439)
T ss_pred             hcccCCceeeeccCC-ceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeee
Confidence            999999999999999 99999987 677777888999999998864  6677765   468899999643321 122257


Q ss_pred             cCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEE
Q 038577          518 HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYIL  597 (860)
Q Consensus       518 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~  597 (860)
                      |.+.++++++.|..+.|++|+.+|.|++||++..++++.++.-                             . ...+++
T Consensus      2335 H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~~-----------------------------~-~~~~f~ 2384 (2439)
T KOG1064|consen 2335 HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQAL-----------------------------D-TREYFV 2384 (2439)
T ss_pred             cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhhh-----------------------------h-hhheee
Confidence            9999999999999999999999999999999988877666531                             1 356899


Q ss_pred             EecCCCeEEEEECCCceEEEEEeecc
Q 038577          598 AGGSSKYICMYDVADQVLLRRFQITH  623 (860)
Q Consensus       598 ~~~~dg~v~vwd~~~~~~~~~~~~~~  623 (860)
                      +|+..|.++||++..-.++..++..+
T Consensus      2385 ~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2385 TGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred             ccCcccceEEEEccccchhhcCchhh
Confidence            99999999999999988888776543

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.19  E-value=1.4e-08  Score=92.88  Aligned_cols=265  Identities=15%  Similarity=0.180  Sum_probs=170.5

Q ss_pred             cCCeEEEEECCCceeEE--EE-eecCceeEEEEEee---CCCEEEEEEccCCcEEEEEccCceEEEEecCcc------cC
Q 038577          284 SNGVFGLYQMPDFVCIH--LL-SISREKITTAVFNE---LGNWLVFGCAKLGQLLVWEWRSESYILKQQGHY------FD  351 (860)
Q Consensus       284 ~~g~i~~~~~~~~~~~~--~~-~~~~~~i~~~~~s~---~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~------~~  351 (860)
                      ..|.+.+|++.+.+...  ++ ......+..+.|..   +|.....-....|.|.++..........+.+-.      ..
T Consensus        44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~  123 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE  123 (339)
T ss_pred             eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence            34788899887655443  22 22334556666653   455333333334899998876555444443221      12


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE--EEeecCCCceEEEEEeeCC-CEEEEEeCCCcEEEEEcccc-ceee
Q 038577          352 VNCLAYSPDSQLLATGADDNKVKVWTVSSGFCF--VTFTEHTNAVTALHFMANN-HSLLSASLDGTVRAWDLFRY-RNFR  427 (860)
Q Consensus       352 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~~~~-~~~~  427 (860)
                      ..++.|++.+..++++..+|.+.+-+.......  +..+.|.-+.+...|+... +.+.+||.|+.+..||++.. +.+.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            457789999999999999999996665555443  3788999999999997643 68889999999999999833 2333


Q ss_pred             EeeCCCCCcEEEEEECC-CCCEEEEEecCCCeEEEEECCC-CceEEEecCcccCeEEEEEcCC--CCEEEEEeCCCcEEE
Q 038577          428 TFTTPSSRQFVSLASDQ-SGEVICAGTLDSFEIFVWSMKT-GRLLDILSGHEGPVHGLVFSPT--NATLASSSWDKTVRL  503 (860)
Q Consensus       428 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~v~d~~~-~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~i  503 (860)
                      .-...+...|.++.-+| .+.++++|+.|. .|++||.+. ++++..-. -.+.|..+..+|.  +..|+++-..| .+|
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe-~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki  280 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDE-CIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKI  280 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEecccc-ceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceE
Confidence            32333445677776665 578999999999 999999984 56655443 3588999999995  34455555454 667


Q ss_pred             EEccCCcce-----eEEcccCCCeEEEEEeeCCCEEEEEe-CCCeEE-EEeCCCC
Q 038577          504 WNVFEGKGS-----VESFPHTHDVLTVVYRPDGRQLACST-LDGQIH-FWDPLNG  551 (860)
Q Consensus       504 wd~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~-iwd~~~~  551 (860)
                      -+.......     .....|.+-+..-.|..-...||+++ .|..++ +|-.-++
T Consensus       281 ~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  281 LDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             EEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence            766554322     11223555555555644445677764 355534 6655444

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.15  E-value=7.6e-08  Score=101.74  Aligned_cols=306  Identities=13%  Similarity=0.066  Sum_probs=186.4

Q ss_pred             eEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccc---cCCCCceEEEEecCCCCEEEEEEc
Q 038577          208 RIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDF---SQAPSKVTACDYHRGLDMVVVGFS  284 (860)
Q Consensus       208 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~  284 (860)
                      .+++.+.++.+..+|..+++.                      .|........   .............-++..+++++.
T Consensus        71 ~vy~~~~~g~l~ald~~tG~~----------------------~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~  128 (394)
T PRK11138         71 KVYAADRAGLVKALDADTGKE----------------------IWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE  128 (394)
T ss_pred             EEEEECCCCeEEEEECCCCcE----------------------eeEEcCCCcccccccccccccccccEEECCEEEEEcC
Confidence            788888899999999887754                      6765432210   000000000001114567888999


Q ss_pred             CCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEE-EEEcC--CC
Q 038577          285 NGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNC-LAYSP--DS  361 (860)
Q Consensus       285 ~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~-~~~s~--~~  361 (860)
                      +|.+..+|..+++.+...............  .+..+++... +|.+..+|.++|+.+............ ..-+|  .+
T Consensus       129 ~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~  205 (394)
T PRK11138        129 KGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTS-NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAF  205 (394)
T ss_pred             CCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECC-CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEEC
Confidence            999999999999988776654322222222  2344555444 489999999999988877532111100 00111  13


Q ss_pred             CEEEEEeCCCcEEEEECCCCeeEEEeecCCC-------ceEEEEEee--CCCEEEEEeCCCcEEEEEccccceeeEeeCC
Q 038577          362 QLLATGADDNKVKVWTVSSGFCFVTFTEHTN-------AVTALHFMA--NNHSLLSASLDGTVRAWDLFRYRNFRTFTTP  432 (860)
Q Consensus       362 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~i~~~~--~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~  432 (860)
                      ..++.++.+|.+..+|..+|+.+........       ....+..+|  .+..++.++.+|.+..+|..+++........
T Consensus       206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~  285 (394)
T PRK11138        206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG  285 (394)
T ss_pred             CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC
Confidence            3567778889999999998877655431110       001111111  2446777888999999999999877655433


Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcc-cCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcc
Q 038577          433 SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHE-GPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKG  511 (860)
Q Consensus       433 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~  511 (860)
                      ..   ..+.  ..+..+++++.++ .++.+|..+|+.+.....-. ....+...  .+..++.++.||.+...|..+++.
T Consensus       286 ~~---~~~~--~~~~~vy~~~~~g-~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~  357 (394)
T PRK11138        286 SV---NDFA--VDGGRIYLVDQND-RVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRF  357 (394)
T ss_pred             Cc---cCcE--EECCEEEEEcCCC-eEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence            21   1111  2456777777777 99999999998765443211 11222222  256788889999999999999986


Q ss_pred             eeEEcccCCCeEE-EEEeeCCCEEEEEeCCCeEEEEeC
Q 038577          512 SVESFPHTHDVLT-VVYRPDGRQLACSTLDGQIHFWDP  548 (860)
Q Consensus       512 ~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~iwd~  548 (860)
                      +.........+.+ ..+  .+..|++++.||.|+.+++
T Consensus       358 ~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        358 VAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             EEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            6555433233322 222  2447888999999988865

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.12  E-value=1.5e-08  Score=91.24  Aligned_cols=258  Identities=10%  Similarity=0.011  Sum_probs=169.4

Q ss_pred             CeEEEEECCCCcE--EeeccCCccCeeEEEEcC-----CCCEEEEEcCCCcEEEEEcccCeEEEEee--cCCceeEEEEC
Q 038577           32 NRVSVTDLIKSKT--VTLPVESSSNICRIAVSP-----DGTFLLTVDENQRCHFINLHCHVVLHRVR--FKYPVNAILFS  102 (860)
Q Consensus        32 ~~i~v~d~~~~~~--~~~~~~h~~~v~~va~sp-----dg~~la~~~~d~~i~vwd~~~~~~~~~~~--~~~~v~~~~fs  102 (860)
                      ..+-+|+.-++..  +.+.       +.+.|-|     .-.+||.++..|...+|...+.+....+-  +...|+-+.=.
T Consensus        52 ~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~  124 (344)
T KOG4532|consen   52 ISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRY  124 (344)
T ss_pred             eeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhh
Confidence            4577888776652  2222       3445544     33579999999999999988655443322  33322211111


Q ss_pred             CC--CCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCC--eEEEEEcCCCCeEEEeecCCeEEEEeecccccCcc
Q 038577          103 PN--GKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDK--VTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIH  178 (860)
Q Consensus       103 pd--g~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~  178 (860)
                      .|  .+.+.+..|.++++.+++.+..         ....|...  +.++++++|++++++.+....|..|.++...+.  
T Consensus       125 cd~~~~~~i~sndht~k~~~~~~~s~---------~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey--  193 (344)
T KOG4532|consen  125 CDLKFPLNIASNDHTGKTMVVSGDSN---------KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEY--  193 (344)
T ss_pred             cccccceeeccCCcceeEEEEecCcc---------cceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccce--
Confidence            11  2344455788888888876542         12234333  789999999999999999999999999877333  


Q ss_pred             cccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeec
Q 038577          179 TNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKD  258 (860)
Q Consensus       179 ~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (860)
                       .....+....+.-.+..|+....     .++++..||++.+||+......+.                       ....
T Consensus       194 -~~~~~~a~t~D~gF~~S~s~~~~-----~FAv~~Qdg~~~I~DVR~~~tpm~-----------------------~~ss  244 (344)
T KOG4532|consen  194 -IENIYEAPTSDHGFYNSFSENDL-----QFAVVFQDGTCAIYDVRNMATPMA-----------------------EISS  244 (344)
T ss_pred             -eeeeEecccCCCceeeeeccCcc-----eEEEEecCCcEEEEEecccccchh-----------------------hhcc
Confidence             12234555666667888999888     999999999999999987533111                       1122


Q ss_pred             cccCCCCceEEEEecCCC--CEEEEEEcCCeEEEEECCCceeEEEEeecCc--------eeEEEEEeeCCCEEEEEEccC
Q 038577          259 DFSQAPSKVTACDYHRGL--DMVVVGFSNGVFGLYQMPDFVCIHLLSISRE--------KITTAVFNELGNWLVFGCAKL  328 (860)
Q Consensus       259 ~~~~~~~~v~~~~~~~~~--~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~--------~i~~~~~s~~~~~l~~~~~~~  328 (860)
                      .-+.|.+.+..+.|++.|  ++|+..-.-+.+.+.|+.++...+.+....+        .+....|+.++....+.... 
T Consensus       245 trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-  323 (344)
T KOG4532|consen  245 TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-  323 (344)
T ss_pred             cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch-
Confidence            233578899999999876  4566666668899999998877666554433        36777777777666655442 


Q ss_pred             CcEEEEEccC
Q 038577          329 GQLLVWEWRS  338 (860)
Q Consensus       329 g~i~v~d~~~  338 (860)
                       .+.-|++.+
T Consensus       324 -~~ae~ni~s  332 (344)
T KOG4532|consen  324 -QGAEYNILS  332 (344)
T ss_pred             -hhheeeccc
Confidence             344444433

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.08  E-value=5.5e-10  Score=110.30  Aligned_cols=215  Identities=19%  Similarity=0.345  Sum_probs=161.1

Q ss_pred             EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCc
Q 038577          342 ILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS-------GFCFVTFTEHTNAVTALHFMANNHSLLSASLDGT  414 (860)
Q Consensus       342 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~  414 (860)
                      +..+.+|...|+.++--.+.+.+++++.|.+|++|.++.       ..+..++..|+.+|.++.|..+.++++++  ||.
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence            345678999999888777888999999999999999863       34777889999999999999998777654  789


Q ss_pred             EEEEEccccceeeEee-CCCCCcEEEEEE--CCCCCEEEEEecCCCeEEEEECCCCceEEEec-----CcccCeEEEEEc
Q 038577          415 VRAWDLFRYRNFRTFT-TPSSRQFVSLAS--DQSGEVICAGTLDSFEIFVWSMKTGRLLDILS-----GHEGPVHGLVFS  486 (860)
Q Consensus       415 i~~wd~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~-----~h~~~v~~l~~s  486 (860)
                      +.+||.--++....+. .+.......+..  +-+...+.+++.-..+++++|.+.++....++     +....+.+++..
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            9999988777665333 222222222222  22455555664444499999999988776654     345668999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEE-EeCCCCceeEEEec
Q 038577          487 PTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHF-WDPLNGELMYTIEG  559 (860)
Q Consensus       487 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~  559 (860)
                      |.|++++.+-..|+|.+.|.++++.+..+.+.......++- |..+.|+....|.++.+ |..-+|......+.
T Consensus       886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgimh~q~kp  958 (1034)
T KOG4190|consen  886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGIMHLQDKP  958 (1034)
T ss_pred             cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCeeeeccCC
Confidence            99999999999999999999999866655555555544443 45567888888889988 98888776665544

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=3.2e-09  Score=102.67  Aligned_cols=274  Identities=15%  Similarity=0.176  Sum_probs=194.8

Q ss_pred             CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--C-eeEEEeecCCCceEEEEEeeCCCEEEEEeC-CCcEEEEEccc
Q 038577          347 GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS--G-FCFVTFTEHTNAVTALHFMANNHSLLSASL-DGTVRAWDLFR  422 (860)
Q Consensus       347 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~-~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-dg~i~~wd~~~  422 (860)
                      -|...|+.+..+ -.+++.+++.||.++.|--..  + +.+..+..|...|.+++.+.++..+.+.+. |..++++|+.+
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence            366667666544 456999999999999997543  1 334456678889999999999988889777 99999999988


Q ss_pred             cceeeEeeCCCCCcEEEEEECCCC--CEEEEEecCCCeEEEEECCCCc--eEEEecCcccCeEEEEEcCCCCEEEEEeCC
Q 038577          423 YRNFRTFTTPSSRQFVSLASDQSG--EVICAGTLDSFEIFVWSMKTGR--LLDILSGHEGPVHGLVFSPTNATLASSSWD  498 (860)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~i~v~d~~~~~--~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d  498 (860)
                      ...+..+.........++..++..  ..++++..+.+.+.++|-...-  ....-.-|..+|..+.+.|.+..+++....
T Consensus        86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~  165 (558)
T KOG0882|consen   86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS  165 (558)
T ss_pred             cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence            766655544443333344444432  3677777777799999976443  334445699999999999999999999999


Q ss_pred             CcEEEEEccC------Cc---------ceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEeccccc
Q 038577          499 KTVRLWNVFE------GK---------GSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI  563 (860)
Q Consensus       499 g~i~iwd~~~------~~---------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  563 (860)
                      |.|.-|....      .+         .+..+.......+++.|+|+|..+.+-+.|..|++++..+|+.++.++.....
T Consensus       166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~  245 (558)
T KOG0882|consen  166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTD  245 (558)
T ss_pred             ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchh
Confidence            9999999863      11         01122234566899999999999999999999999999999988876543211


Q ss_pred             CCCcccc---------cccccc----ccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeec
Q 038577          564 SGGRLMT---------DRRSAA----NSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQIT  622 (860)
Q Consensus       564 ~~~~~~~---------~~~~~~----~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~  622 (860)
                      .......         .++.+.    .......-+.++|...|++|+.++-=| |++.++.++...+.+...
T Consensus       246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~  316 (558)
T KOG0882|consen  246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKD  316 (558)
T ss_pred             hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccc
Confidence            1000000         000000    001122347789999999999988777 999999999998866543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.08  E-value=2.7e-07  Score=95.54  Aligned_cols=302  Identities=14%  Similarity=0.094  Sum_probs=164.9

Q ss_pred             e-CCCEEEeee----------CCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEE
Q 038577           21 S-QNTKLISPV----------GNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHR   89 (860)
Q Consensus        21 s-dg~~l~~~~----------~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~   89 (860)
                      | |+++++...          .+.+.+||+.+++...+... ...+....|||||+++|... ++.|.+++..++...+.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            5 788887742          35699999999988777644 67899999999999999986 57999999888855543


Q ss_pred             eecC------------------CceeEEEECCCCCEEEEE--eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEE
Q 038577           90 VRFK------------------YPVNAILFSPNGKYIAVG--TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNW  149 (860)
Q Consensus        90 ~~~~------------------~~v~~~~fspdg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  149 (860)
                      ....                  +.-.++.|||||++||..  .+..|..+.+........          ....+..+.+
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~----------~yp~~~~~~Y  148 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS----------QYPEVESIRY  148 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE----------SS-EEEEEE-
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc----------cCCccccccc
Confidence            3211                  124678999999999998  555555544321110000          0012333333


Q ss_pred             cCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcC--C---ccEEEeeec
Q 038577          150 SPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR--D---CYMFSWGFS  224 (860)
Q Consensus       150 s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~--d---g~i~~w~~~  224 (860)
                      -.-|.--..    -.+.|+|+.++ +.........+..-...+..+.|.+++.     .++..-.  +   ..+.+.|..
T Consensus       149 Pk~G~~np~----v~l~v~~~~~~-~~~~~~~~~~~~~~~~yl~~v~W~~d~~-----~l~~~~~nR~q~~~~l~~~d~~  218 (353)
T PF00930_consen  149 PKAGDPNPR----VSLFVVDLASG-KTTELDPPNSLNPQDYYLTRVGWSPDGK-----RLWVQWLNRDQNRLDLVLCDAS  218 (353)
T ss_dssp             -BTTS---E----EEEEEEESSST-CCCEE---HHHHTSSEEEEEEEEEETTE-----EEEEEEEETTSTEEEEEEEEEC
T ss_pred             CCCCCcCCc----eEEEEEECCCC-cEEEeeeccccCCCccCcccceecCCCc-----EEEEEEcccCCCEEEEEEEECC
Confidence            222221111    13566777666 1100000001123456678899999986     4554433  2   245566665


Q ss_pred             CCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEec-CCCCEEE-EEEcCC--eEEEEECCCceeEE
Q 038577          225 GNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYH-RGLDMVV-VGFSNG--VFGLYQMPDFVCIH  300 (860)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~-~~~~~g--~i~~~~~~~~~~~~  300 (860)
                      ++...                      +..  .....+.-.......+. +++..++ ....+|  .|.+++...+. ..
T Consensus       219 tg~~~----------------------~~~--~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~  273 (353)
T PF00930_consen  219 TGETR----------------------VVL--EETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PR  273 (353)
T ss_dssp             TTTCE----------------------EEE--EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EE
T ss_pred             CCcee----------------------EEE--EecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-ee
Confidence            54331                      111  11111111122233443 5555544 444555  56666665555 34


Q ss_pred             EEeecCcee-EEEEEeeCCCEEEEEEccC----CcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeC
Q 038577          301 LLSISREKI-TTAVFNELGNWLVFGCAKL----GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGAD  369 (860)
Q Consensus       301 ~~~~~~~~i-~~~~~s~~~~~l~~~~~~~----g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  369 (860)
                      .+....-.| ..+.++++++.+.+.+..+    ..+...++..+.....+......-..+.|||+|++++....
T Consensus       274 ~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  274 QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred             ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence            555555566 4578889999888877652    35666666623333444433333368999999998876543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.06  E-value=4.2e-07  Score=86.93  Aligned_cols=231  Identities=17%  Similarity=0.159  Sum_probs=165.6

Q ss_pred             ceEEEEecC-CCCEEEEEEcCCe-EEEEECCCceeEEEEeecCce--eEEEEEeeCCCEEEEEEcc----CCcEEEEEcc
Q 038577          266 KVTACDYHR-GLDMVVVGFSNGV-FGLYQMPDFVCIHLLSISREK--ITTAVFNELGNWLVFGCAK----LGQLLVWEWR  337 (860)
Q Consensus       266 ~v~~~~~~~-~~~~l~~~~~~g~-i~~~~~~~~~~~~~~~~~~~~--i~~~~~s~~~~~l~~~~~~----~g~i~v~d~~  337 (860)
                      ....++.+| ....++++-.-|. ..+||..+++....+....+.  .-...||+||++|+++-.+    .|.|-|||..
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence            345677888 4555666766665 568999999988877665543  3468999999999987543    4889999999


Q ss_pred             -CceEEEEecCcccCeEEEEEcCCCCEEEEEe------------------CCCcEEEEECCCCeeEEE--e--ecCCCce
Q 038577          338 -SESYILKQQGHYFDVNCLAYSPDSQLLATGA------------------DDNKVKVWTVSSGFCFVT--F--TEHTNAV  394 (860)
Q Consensus       338 -~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~--~--~~~~~~v  394 (860)
                       +-..+.++..|.-....+.+.|||+.|+++-                  .+.++...|..+|+.+..  +  ..|...|
T Consensus        86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi  165 (305)
T PF07433_consen   86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI  165 (305)
T ss_pred             CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence             6677888877777777889999998887763                  223466667778887766  4  3377899


Q ss_pred             EEEEEeeCCCEEEEEeCCCc-----EEEEEccccceeeEeeCCC------CCcEEEEEECCCCCEEEEEecCCCeEEEEE
Q 038577          395 TALHFMANNHSLLSASLDGT-----VRAWDLFRYRNFRTFTTPS------SRQFVSLASDQSGEVICAGTLDSFEIFVWS  463 (860)
Q Consensus       395 ~~i~~~~~~~~l~s~~~dg~-----i~~wd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d  463 (860)
                      ..+++.++|..++..-..|.     --+.-.+.+...+.+..+.      ...+-++++++++..+++++-.++.+.+||
T Consensus       166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d  245 (305)
T PF07433_consen  166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWD  245 (305)
T ss_pred             eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEE
Confidence            99999999976665544442     1122222333344443332      346889999999999999999888999999


Q ss_pred             CCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCc
Q 038577          464 MKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKT  500 (860)
Q Consensus       464 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~  500 (860)
                      ..+++.+....  -..+..++..+++ ++++.+ .|.
T Consensus       246 ~~tg~~~~~~~--l~D~cGva~~~~~-f~~ssG-~G~  278 (305)
T PF07433_consen  246 AATGRLLGSVP--LPDACGVAPTDDG-FLVSSG-QGQ  278 (305)
T ss_pred             CCCCCEeeccc--cCceeeeeecCCc-eEEeCC-Ccc
Confidence            99999987764  3346777777666 566554 444

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.06  E-value=2.3e-09  Score=109.93  Aligned_cols=292  Identities=18%  Similarity=0.247  Sum_probs=186.2

Q ss_pred             ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCc--ccCeEEEEEcCCC--CEEEEEeCCCcEEEEECC---
Q 038577          307 EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGH--YFDVNCLAYSPDS--QLLATGADDNKVKVWTVS---  379 (860)
Q Consensus       307 ~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~--~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~---  379 (860)
                      +.+..+.++|.|+-++.++..  .+.+.|+...-.....-.|  .-.|-.+.|+|..  .+-++......-.+|++.   
T Consensus        25 ~~~~a~si~p~grdi~lAsr~--gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss  102 (1081)
T KOG0309|consen   25 GGFNAVSINPSGRDIVLASRQ--GLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS  102 (1081)
T ss_pred             Ccccceeeccccchhhhhhhc--CeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence            467788899999999988764  4566666543221111122  2235567777643  344444455567788875   


Q ss_pred             CCeeEEEeecCCCceEEEEEeeCC-CEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCe
Q 038577          380 SGFCFVTFTEHTNAVTALHFMANN-HSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFE  458 (860)
Q Consensus       380 ~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  458 (860)
                      +......+.+|...|+++-|.|.. ..+++++.|-.+..||+++.....-....-......+.++.....+.+.+... .
T Consensus       103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~-~  181 (1081)
T KOG0309|consen  103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGN-D  181 (1081)
T ss_pred             ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCC-c
Confidence            334455677899999999999865 57889999999999999876543322222223445677776555555555555 8


Q ss_pred             EEEEECCCC-ceEEEecCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEEccCCcce-eEEcccCCCeEEEEEeeCCC--E
Q 038577          459 IFVWSMKTG-RLLDILSGHEGPVHGLVFSPT-NATLASSSWDKTVRLWNVFEGKGS-VESFPHTHDVLTVVYRPDGR--Q  533 (860)
Q Consensus       459 i~v~d~~~~-~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~--~  533 (860)
                      |.+||++.| .++..+++|...|..++|..- ...+.+++.||+|++||....... ........+|..-.+-|-|.  +
T Consensus       182 i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~  261 (1081)
T KOG0309|consen  182 IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC  261 (1081)
T ss_pred             eEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE
Confidence            999999865 577889999999999998652 346888999999999998765422 23335566777777777443  3


Q ss_pred             EEEEeCCCeEEEEe---------CCC-CceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCC--CEEEEecC
Q 038577          534 LACSTLDGQIHFWD---------PLN-GELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADG--SYILAGGS  601 (860)
Q Consensus       534 l~~~~~dg~i~iwd---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g--~~l~~~~~  601 (860)
                      +.---.+..+.+++         ..+ .++++.+.||.+..-.-....+            ....+.-|.  -.|++-+.
T Consensus       262 ~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r------------~e~~~d~d~rdfQLVTWSk  329 (1081)
T KOG0309|consen  262 IMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKR------------KECDGDYDSRDFQLVTWSK  329 (1081)
T ss_pred             eccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhc------------ccccCCCCccceeEEEeec
Confidence            22222222344443         333 3678889998874211000000            001111222  26889999


Q ss_pred             CCeEEEEECCCc
Q 038577          602 SKYICMYDVADQ  613 (860)
Q Consensus       602 dg~v~vwd~~~~  613 (860)
                      |..+++|-+.+.
T Consensus       330 D~~lrlWpI~~~  341 (1081)
T KOG0309|consen  330 DQTLRLWPIDSQ  341 (1081)
T ss_pred             CCceEeeeccHH
Confidence            999999988653

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.05  E-value=5.9e-07  Score=85.96  Aligned_cols=246  Identities=16%  Similarity=0.202  Sum_probs=162.6

Q ss_pred             eeEEEEEeeCCC-EEEEEEccCCcEEEEEccCceEEEEecCcccCe--EEEEEcCCCCEEEEEeC-----CCcEEEEECC
Q 038577          308 KITTAVFNELGN-WLVFGCAKLGQLLVWEWRSESYILKQQGHYFDV--NCLAYSPDSQLLATGAD-----DNKVKVWTVS  379 (860)
Q Consensus       308 ~i~~~~~s~~~~-~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~~~~-----dg~i~iwd~~  379 (860)
                      ....++.+|... .++++-.......+||..+++....+....+.-  -.-.||+||++|++.-.     .|.|-|||..
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence            345677888544 444444443457889999998877664322211  13579999999998643     5789999998


Q ss_pred             -CCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCe
Q 038577          380 -SGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFE  458 (860)
Q Consensus       380 -~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  458 (860)
                       +...+.++..|.-....+.+.||++.|+.+.  |-|.- ...+++..                      |-....+. .
T Consensus        86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN--GGI~T-hpd~GR~k----------------------LNl~tM~p-s  139 (305)
T PF07433_consen   86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVAN--GGIET-HPDSGRAK----------------------LNLDTMQP-S  139 (305)
T ss_pred             CCcEEEeEecCCCcChhhEEEcCCCCEEEEEc--CCCcc-CcccCcee----------------------cChhhcCC-c
Confidence             6788889998888889999999998888763  22211 00111111                      11112222 5


Q ss_pred             EEEEECCCCceEEE--e--cCcccCeEEEEEcCCCCEEEEEeCCCc-------EEEEEccCCcceeE-----EcccCCCe
Q 038577          459 IFVWSMKTGRLLDI--L--SGHEGPVHGLVFSPTNATLASSSWDKT-------VRLWNVFEGKGSVE-----SFPHTHDV  522 (860)
Q Consensus       459 i~v~d~~~~~~~~~--~--~~h~~~v~~l~~s~~~~~l~s~~~dg~-------i~iwd~~~~~~~~~-----~~~~~~~v  522 (860)
                      +...|..+|+++..  +  .-|...|..+++.++|..++..-..|.       |-+++-...-....     .......+
T Consensus       140 L~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~  219 (305)
T PF07433_consen  140 LVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYI  219 (305)
T ss_pred             eEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCce
Confidence            67777888888766  4  337888999999999987766655442       33343222111111     11345779


Q ss_pred             EEEEEeeCCCEEEEEeC-CCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecC
Q 038577          523 LTVVYRPDGRQLACSTL-DGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGS  601 (860)
Q Consensus       523 ~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~  601 (860)
                      -+|++++++.++++.+- .|.+.+||..+++.+.......                      +..++-.+++ ++++.+.
T Consensus       220 gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D----------------------~cGva~~~~~-f~~ssG~  276 (305)
T PF07433_consen  220 GSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD----------------------ACGVAPTDDG-FLVSSGQ  276 (305)
T ss_pred             EEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc----------------------eeeeeecCCc-eEEeCCC
Confidence            99999999988866654 5679999999999988776554                      6777777777 6666554


Q ss_pred             C
Q 038577          602 S  602 (860)
Q Consensus       602 d  602 (860)
                      .
T Consensus       277 G  277 (305)
T PF07433_consen  277 G  277 (305)
T ss_pred             c
Confidence            3

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.05  E-value=8.7e-08  Score=86.51  Aligned_cols=203  Identities=10%  Similarity=0.008  Sum_probs=132.2

Q ss_pred             CCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCC-CCEEEEEecCCCeEEEEECCCCceEEEecCcccCeE
Q 038577          403 NHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQS-GEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVH  481 (860)
Q Consensus       403 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~  481 (860)
                      ..+|+.||..|...+|...+.+.....-..+...+.-+.-..+ .--+..++.|. ++++.++..+.......-..-.+.
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndh-t~k~~~~~~~s~~~~~h~~~~~~n  162 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDH-TGKTMVVSGDSNKFAVHNQNLTQN  162 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCc-ceeEEEEecCcccceeecccccee
Confidence            3578999999999999988655433322222221111110011 11233344444 677776664433222211123378


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEccCCcc-eeE--EcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEe
Q 038577          482 GLVFSPTNATLASSSWDKTVRLWNVFEGKG-SVE--SFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIE  558 (860)
Q Consensus       482 ~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  558 (860)
                      ++++++|++++++.+....|..|.+..... +..  .......-.+..|+.....+|++..||++.|||++.........
T Consensus       163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~  242 (344)
T KOG4532|consen  163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI  242 (344)
T ss_pred             eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence            999999999999999999999999876542 222  22345556788999999999999999999999998765443322


Q ss_pred             cccccCCCccccccccccccCCCCcEEEEEEecCCC--EEEEecCCCeEEEEECCCceEEEEEee
Q 038577          559 GRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGS--YILAGGSSKYICMYDVADQVLLRRFQI  621 (860)
Q Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~--~l~~~~~dg~v~vwd~~~~~~~~~~~~  621 (860)
                      ...               .+.+.+.+..+.|++-|.  +|+..-.-+.+.+-|++++.-.+.+..
T Consensus       243 sst---------------rp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i  292 (344)
T KOG4532|consen  243 SST---------------RPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI  292 (344)
T ss_pred             ccc---------------CCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEec
Confidence            211               123456799999998764  555555668899999999987766554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=3.7e-07  Score=96.36  Aligned_cols=200  Identities=19%  Similarity=0.262  Sum_probs=138.6

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCc-eEEEEEeeCCCEEEEEeCCCc-----EEEEEcccc------
Q 038577          356 AYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNA-VTALHFMANNHSLLSASLDGT-----VRAWDLFRY------  423 (860)
Q Consensus       356 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~s~~~dg~-----i~~wd~~~~------  423 (860)
                      +|++.+..++.|+.+|.|.+++ ++-+.+..+..+... |..+....+..+|++.+.|+.     +++|++...      
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            4678888999999999998887 334445777777777 555544444468888887764     899999653      


Q ss_pred             cee---eEee--CC-CCCcEEEEEECCCCCEEEEEecCCCeEEEEECCC----CceEEEecCcccCeEEEEEcCCCCEEE
Q 038577          424 RNF---RTFT--TP-SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT----GRLLDILSGHEGPVHGLVFSPTNATLA  493 (860)
Q Consensus       424 ~~~---~~~~--~~-~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~----~~~~~~~~~h~~~v~~l~~s~~~~~l~  493 (860)
                      .+.   +.+.  .+ .+.++.+++++.+-+.+|+|-.+| .|..+.-+-    |........-..+|+++++..+++.++
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG-~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l  187 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNG-LVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL  187 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCc-EEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence            222   2222  22 355788899999999999999998 888875331    221222223467999999999988744


Q ss_pred             EEeCCCcEEEEEccCCcceeE-EcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEe
Q 038577          494 SSSWDKTVRLWNVFEGKGSVE-SFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIE  558 (860)
Q Consensus       494 s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  558 (860)
                      .+..-..|.+|.+....+... ...|..++.|..+++....+++++ +..+.+|+.....+-..+.
T Consensus       188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             EEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence            444566799999985543333 456788899999997666466665 4459999988665555555

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.04  E-value=1.6e-07  Score=92.16  Aligned_cols=221  Identities=17%  Similarity=0.164  Sum_probs=146.5

Q ss_pred             CCcEEEEEccCceEEEEecCc--ccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCE
Q 038577          328 LGQLLVWEWRSESYILKQQGH--YFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHS  405 (860)
Q Consensus       328 ~g~i~v~d~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~  405 (860)
                      +|.|..||..+++.+......  .....+. ..+++..+++++.++.+..||..+|+.+..+.. ...+.... ...+..
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence            489999999999998887531  1122211 333566788888999999999999999887765 22222112 223456


Q ss_pred             EEEEeCCCcEEEEEccccceeeEe-eCCC--CCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccC---
Q 038577          406 LLSASLDGTVRAWDLFRYRNFRTF-TTPS--SRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGP---  479 (860)
Q Consensus       406 l~s~~~dg~i~~wd~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~---  479 (860)
                      ++.++.++.+..+|..+++..... ....  ............+..++++..++ .+..+|.++|+.+........+   
T Consensus        79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~~~d~~tG~~~w~~~~~~~~~~~  157 (238)
T PF13360_consen   79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSG-KLVALDPKTGKLLWKYPVGEPRGSS  157 (238)
T ss_dssp             EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCS-EEEEEETTTTEEEEEEESSTT-SS-
T ss_pred             cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccC-cEEEEecCCCcEEEEeecCCCCCCc
Confidence            777778889999999999988874 3221  11122223333378888888777 9999999999998887654422   


Q ss_pred             -------eEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCc
Q 038577          480 -------VHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGE  552 (860)
Q Consensus       480 -------v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  552 (860)
                             +..-....++ .+..++.++.+.-+|+.+++......  ...+.. ...+++..|++++.++.+..||+.+|+
T Consensus       158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  158 PISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             -EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred             ceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCC
Confidence                   1222222344 77777777764444999998553222  222222 245677888888899999999999999


Q ss_pred             eeEE
Q 038577          553 LMYT  556 (860)
Q Consensus       553 ~~~~  556 (860)
                      .+.+
T Consensus       234 ~~W~  237 (238)
T PF13360_consen  234 VVWQ  237 (238)
T ss_dssp             EEEE
T ss_pred             EEeE
Confidence            8754

...

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=1.1e-08  Score=98.99  Aligned_cols=255  Identities=15%  Similarity=0.147  Sum_probs=185.7

Q ss_pred             cCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCc
Q 038577          187 GHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSK  266 (860)
Q Consensus       187 ~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (860)
                      -|.+.|+.+.-+...      ++.+++-||.++.|.-..-.                         .+.-...+..|-..
T Consensus         7 mhrd~i~hv~~tka~------fiiqASlDGh~KFWkKs~is-------------------------GvEfVKhFraHL~~   55 (558)
T KOG0882|consen    7 MHRDVITHVFPTKAK------FIIQASLDGHKKFWKKSRIS-------------------------GVEFVKHFRAHLGV   55 (558)
T ss_pred             cccceeeeEeeehhh------eEEeeecchhhhhcCCCCcc-------------------------ceeehhhhHHHHHH
Confidence            377777777655433      89999999999999654311                         11223455667778


Q ss_pred             eEEEEecCCCCEEEEEEc-CCeEEEEECCCceeEEEEeecCceeEEEEEeeCC---CEEEEEEccCCcEEEEEccCce-E
Q 038577          267 VTACDYHRGLDMVVVGFS-NGVFGLYQMPDFVCIHLLSISREKITTAVFNELG---NWLVFGCAKLGQLLVWEWRSES-Y  341 (860)
Q Consensus       267 v~~~~~~~~~~~l~~~~~-~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~---~~l~~~~~~~g~i~v~d~~~~~-~  341 (860)
                      +.+++.+-++..+.++.. |..++++|+.+...+..++...-+-.+-.+...|   ..++++..++|.+.++|-.... .
T Consensus        56 I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q  135 (558)
T KOG0882|consen   56 ILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ  135 (558)
T ss_pred             HHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCc
Confidence            899999999999998777 9999999998777665444433222222223333   2566666778999999976543 2


Q ss_pred             -EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC------Cee---------EEEeecCCCceEEEEEeeCCCE
Q 038577          342 -ILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS------GFC---------FVTFTEHTNAVTALHFMANNHS  405 (860)
Q Consensus       342 -~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~------~~~---------~~~~~~~~~~v~~i~~~~~~~~  405 (860)
                       ...-.-|..+|.++.+++.+..+++....|.|.-|....      ...         +..+........++.|+|++..
T Consensus       136 ~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q  215 (558)
T KOG0882|consen  136 DGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ  215 (558)
T ss_pred             cceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCc
Confidence             223356999999999999999999999999999998762      111         1122234567889999999999


Q ss_pred             EEEEeCCCcEEEEEccccceeeEeeCC--------------------------------CCCcEEEEEECCCCCEEEEEe
Q 038577          406 LLSASLDGTVRAWDLFRYRNFRTFTTP--------------------------------SSRQFVSLASDQSGEVICAGT  453 (860)
Q Consensus       406 l~s~~~dg~i~~wd~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~l~~~~  453 (860)
                      +.+-+.|..|+++++.+++..+.+...                                .......+.|+..|++|+.++
T Consensus       216 istl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t  295 (558)
T KOG0882|consen  216 ISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGT  295 (558)
T ss_pred             ccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeec
Confidence            999999999999999888765544321                                112345678999999999998


Q ss_pred             cCCCeEEEEECCCCceEEEec
Q 038577          454 LDSFEIFVWSMKTGRLLDILS  474 (860)
Q Consensus       454 ~~~~~i~v~d~~~~~~~~~~~  474 (860)
                      .-|  |++.++.++...+.+.
T Consensus       296 ~~g--ikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  296 ILG--IKVINLDTNTVVRILG  314 (558)
T ss_pred             cee--EEEEEeecCeEEEEec
Confidence            875  9999999998887764

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.03  E-value=2.1e-07  Score=91.32  Aligned_cols=218  Identities=17%  Similarity=0.145  Sum_probs=146.5

Q ss_pred             CCcEEEEECCCCeeEEEeecCC--CceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCC
Q 038577          370 DNKVKVWTVSSGFCFVTFTEHT--NAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGE  447 (860)
Q Consensus       370 dg~i~iwd~~~~~~~~~~~~~~--~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (860)
                      +|.|..||..+|+.+.......  ....+. ..+++..+++++.++.+..||..+++.......+......   ....+.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~---~~~~~~   77 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA---PVVDGG   77 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG---EEEETT
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce---eeeccc
Confidence            6889999999999988875411  222211 3335667888889999999999999988888764432222   123455


Q ss_pred             EEEEEecCCCeEEEEECCCCceEEEe-cCcc---cCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCC--
Q 038577          448 VICAGTLDSFEIFVWSMKTGRLLDIL-SGHE---GPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHD--  521 (860)
Q Consensus       448 ~l~~~~~~~~~i~v~d~~~~~~~~~~-~~h~---~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--  521 (860)
                      .++++..++ .++.+|..+|+.+... ....   ..........++..++.+..++.|..+|..+++.+.........  
T Consensus        78 ~v~v~~~~~-~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~  156 (238)
T PF13360_consen   78 RVYVGTSDG-SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS  156 (238)
T ss_dssp             EEEEEETTS-EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred             cccccccee-eeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence            566666776 9999999999998874 3221   11222333334888888888999999999999876655442211  


Q ss_pred             --------eEEEEEeeCCCEEEEEeCCCe-EEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecC
Q 038577          522 --------VLTVVYRPDGRQLACSTLDGQ-IHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSAD  592 (860)
Q Consensus       522 --------v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  592 (860)
                              +..-....++ .++.++.+|. +.+ |+.+++.+.... ...                     +.. ....+
T Consensus       157 ~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~---------------------~~~-~~~~~  211 (238)
T PF13360_consen  157 SPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-ISG---------------------IYS-LPSVD  211 (238)
T ss_dssp             --EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS----------------------ECE-CEECC
T ss_pred             cceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CCC---------------------ccC-Cceee
Confidence                    1222222245 7777777875 555 999999765333 211                     222 24567


Q ss_pred             CCEEEEecCCCeEEEEECCCceEEE
Q 038577          593 GSYILAGGSSKYICMYDVADQVLLR  617 (860)
Q Consensus       593 g~~l~~~~~dg~v~vwd~~~~~~~~  617 (860)
                      +..|++++.++.|..||+.+|+.+-
T Consensus       212 ~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  212 GGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             CTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEe
Confidence            8888888899999999999998764

...

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.03  E-value=1.4e-06  Score=85.52  Aligned_cols=219  Identities=17%  Similarity=0.154  Sum_probs=146.0

Q ss_pred             EEEEecC-CCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEec
Q 038577          268 TACDYHR-GLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQ  346 (860)
Q Consensus       268 ~~~~~~~-~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~  346 (860)
                      .+.+|.+ ++.++++-...+.|..|+..++.... +....  ...+++...+..++++..  +.+.++|..+++......
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~--~~~~~~d~~~g~~~~~~~   77 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADS--GGIAVVDPDTGKVTVLAD   77 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEET--TCEEEEETTTTEEEEEEE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEc--CceEEEecCCCcEEEEee
Confidence            3577888 66666666678999999998776543 22222  677778733355555544  566777988885544332


Q ss_pred             C-----cccCeEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEE-EEeCC
Q 038577          347 G-----HYFDVNCLAYSPDSQLLATGADD--------NKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLL-SASLD  412 (860)
Q Consensus       347 ~-----~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~d  412 (860)
                      .     .....+.+++.|+|++.++....        |.|..++.. ++..... ..-.....++|+|+++.|+ +-+..
T Consensus        78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~  155 (246)
T PF08450_consen   78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFN  155 (246)
T ss_dssp             EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTT
T ss_pred             ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeeccccc
Confidence            2     34567899999999977776543        557777776 5544333 3456678999999998775 55677


Q ss_pred             CcEEEEEccccce----eeEee-CCCC-CcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEc
Q 038577          413 GTVRAWDLFRYRN----FRTFT-TPSS-RQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFS  486 (860)
Q Consensus       413 g~i~~wd~~~~~~----~~~~~-~~~~-~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s  486 (860)
                      +.|..+++.....    .+.+. .+.. .....++++.+|++.++....+ .|.++|.+ |+.+..+......+++++|.
T Consensus       156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~-~I~~~~p~-G~~~~~i~~p~~~~t~~~fg  233 (246)
T PF08450_consen  156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGG-RIVVFDPD-GKLLREIELPVPRPTNCAFG  233 (246)
T ss_dssp             TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTT-EEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred             ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCC-EEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence            8899999864322    22232 2222 2478899999998777666555 99999988 88888877665689999994


Q ss_pred             -CCCCEEEEE
Q 038577          487 -PTNATLASS  495 (860)
Q Consensus       487 -~~~~~l~s~  495 (860)
                       ++.+.|...
T Consensus       234 g~~~~~L~vT  243 (246)
T PF08450_consen  234 GPDGKTLYVT  243 (246)
T ss_dssp             STTSSEEEEE
T ss_pred             CCCCCEEEEE
Confidence             665555543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.02  E-value=1.6e-06  Score=85.08  Aligned_cols=219  Identities=14%  Similarity=0.073  Sum_probs=146.3

Q ss_pred             EEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEc-CCCCEEEEEeCCCcEEEEECCCCeeEEEeec
Q 038577          311 TAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYS-PDSQLLATGADDNKVKVWTVSSGFCFVTFTE  389 (860)
Q Consensus       311 ~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  389 (860)
                      ++.|.+....|..+....+.|..|+..++.........   ...+++. +++ .++.+.. +.+.++|..+++.......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~---~~G~~~~~~~g-~l~v~~~-~~~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG---PNGMAFDRPDG-RLYVADS-GGIAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS---EEEEEEECTTS-EEEEEET-TCEEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC---CceEEEEccCC-EEEEEEc-CceEEEecCCCcEEEEeec
Confidence            56788866666666666699999999888765422222   6677777 565 5555555 4566669988865544433


Q ss_pred             -----CCCceEEEEEeeCCCEEEEEeCC--------CcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC
Q 038577          390 -----HTNAVTALHFMANNHSLLSASLD--------GTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS  456 (860)
Q Consensus       390 -----~~~~v~~i~~~~~~~~l~s~~~d--------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  456 (860)
                           .......+++.++|+..++....        |.+..++.. ++.......  -.....++++|+++.|+++....
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~~~pNGi~~s~dg~~lyv~ds~~  155 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--LGFPNGIAFSPDGKTLYVADSFN  155 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--ESSEEEEEEETTSSEEEEEETTT
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--cccccceEECCcchheeeccccc
Confidence                 34568899999999977766543        456666665 333322222  33568999999999998777766


Q ss_pred             CeEEEEECCCCce-------EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEe-
Q 038577          457 FEIFVWSMKTGRL-------LDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-  528 (860)
Q Consensus       457 ~~i~v~d~~~~~~-------~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-  528 (860)
                      +.|+.|++.....       ...+....+..-.+++..+|++.++....+.|.++|.. ++.+.........+++++|. 
T Consensus       156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg  234 (246)
T PF08450_consen  156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGG  234 (246)
T ss_dssp             TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEES
T ss_pred             ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEEC
Confidence            6999999863221       12222222347889999999988888888999999987 66555554444689999995 


Q ss_pred             eCCCEEEEEe
Q 038577          529 PDGRQLACST  538 (860)
Q Consensus       529 ~~~~~l~~~~  538 (860)
                      ++.+.|++.+
T Consensus       235 ~~~~~L~vTt  244 (246)
T PF08450_consen  235 PDGKTLYVTT  244 (246)
T ss_dssp             TTSSEEEEEE
T ss_pred             CCCCEEEEEe
Confidence            6767776654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.02  E-value=1e-07  Score=87.33  Aligned_cols=157  Identities=19%  Similarity=0.211  Sum_probs=119.3

Q ss_pred             ceEEEEecCCCCEEEEEEcCCeEEEEECCCceeE--EEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc-CceEE
Q 038577          266 KVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCI--HLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR-SESYI  342 (860)
Q Consensus       266 ~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~-~~~~~  342 (860)
                      ...++.|++.+..++++..+|.+.+.+.......  +.++.|.-+.....|+.....++..+++|+.+..||++ .++.+
T Consensus       123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i  202 (339)
T KOG0280|consen  123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI  202 (339)
T ss_pred             eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence            3567889999999999999999997666554443  47888999999999999888999999999999999999 44555


Q ss_pred             EE-ecCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeeEEEeecCCCceEEEEEeeCCC-EEEEEeCCCcEEEE
Q 038577          343 LK-QQGHYFDVNCLAYSP-DSQLLATGADDNKVKVWTVSS-GFCFVTFTEHTNAVTALHFMANNH-SLLSASLDGTVRAW  418 (860)
Q Consensus       343 ~~-~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~i~~w  418 (860)
                      .. .+-|...|.++.-+| .+.++++|+.|..|++||.++ ++++..-. -.+.|+.+.++|.-. .++.+..-.-.++.
T Consensus       203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~  281 (339)
T KOG0280|consen  203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKIL  281 (339)
T ss_pred             eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEE
Confidence            44 356888899998876 477999999999999999984 55554432 457899999998542 23333333345666


Q ss_pred             Ecccc
Q 038577          419 DLFRY  423 (860)
Q Consensus       419 d~~~~  423 (860)
                      +....
T Consensus       282 ~~~~~  286 (339)
T KOG0280|consen  282 DSSDK  286 (339)
T ss_pred             Eeccc
Confidence            66544

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.01  E-value=1.8e-09  Score=121.55  Aligned_cols=225  Identities=15%  Similarity=0.166  Sum_probs=166.9

Q ss_pred             CeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccc
Q 038577          154 NYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDET  233 (860)
Q Consensus       154 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~  233 (860)
                      +.......++...-|..+..        ......+-..|.++.=+|...     +.++++.||.+++|....++.     
T Consensus      2181 ~~~~~~n~~~~~~tq~~~~~--------~~~~k~~v~~v~r~~sHp~~~-----~Yltgs~dgsv~~~~w~~~~~----- 2242 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGA--------SVMIKHPVENVRRMTSHPSDP-----YYLTGSQDGSVRMFEWGHGQQ----- 2242 (2439)
T ss_pred             ccCCcccCCccccceecccc--------eeEeecccCceeeecCCCCCc-----eEEecCCCceEEEEeccCCCe-----
Confidence            33333444455555544433        334455666777777778777     999999999999998877543     


Q ss_pred             cCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEE
Q 038577          234 MEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAV  313 (860)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~  313 (860)
                                     +-.|+.       .....++.+.|+.+|+.+.++..||.+.+|... .+.....+.|........
T Consensus      2243 ---------------v~~~rt-------~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~ 2299 (2439)
T KOG1064|consen 2243 ---------------VVCFRT-------AGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFR 2299 (2439)
T ss_pred             ---------------EEEeec-------cCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCcccccee
Confidence                           122221       123789999999999999999999999999995 666677778888888888


Q ss_pred             EeeCCCEEEEEE--ccCCcEEEEEccCc---eEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEee
Q 038577          314 FNELGNWLVFGC--AKLGQLLVWEWRSE---SYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFT  388 (860)
Q Consensus       314 ~s~~~~~l~~~~--~~~g~i~v~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  388 (860)
                      |-.  ..++.++  .+++.+.+||.--.   ..+.  ..|.+.++++++-|..+.|++|+.+|.|++||++..+.+..++
T Consensus      2300 Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2300 FIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred             eee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh
Confidence            876  3344433  45689999996432   2233  7899999999999999999999999999999998777666554


Q ss_pred             cCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCC
Q 038577          389 EHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPS  433 (860)
Q Consensus       389 ~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~  433 (860)
                      .         +. ...++++++..|.++||++.....+..++..+
T Consensus      2376 ~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2376 A---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred             h---------hh-hhheeeccCcccceEEEEccccchhhcCchhh
Confidence            3         33 45689999999999999998877776665443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.01  E-value=4.1e-08  Score=102.57  Aligned_cols=111  Identities=11%  Similarity=0.146  Sum_probs=91.1

Q ss_pred             eeEEEEcCCCCEEEEEcC----CCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccc
Q 038577           55 ICRIAVSPDGTFLLTVDE----NQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVF  129 (860)
Q Consensus        55 v~~va~spdg~~la~~~~----d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~  129 (860)
                      -+-..|+|...++|+++.    .|.|.|+- ++|++-+....+-.+++++|+|..-.||.| .-|.+.+|...+.+.   
T Consensus        18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~---   93 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET---   93 (1416)
T ss_pred             ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCcee---
Confidence            355679999999988754    48888884 677766555556667889999999999999 779999999887763   


Q ss_pred             eeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeeccc
Q 038577          130 AFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEK  173 (860)
Q Consensus       130 ~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~  173 (860)
                          ......|+.+|..+.|||+|..|+++..-|.|.+|..+..
T Consensus        94 ----htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~  133 (1416)
T KOG3617|consen   94 ----HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI  133 (1416)
T ss_pred             ----eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence                3445579999999999999999999999999999998743

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.99  E-value=4e-06  Score=75.80  Aligned_cols=143  Identities=17%  Similarity=0.127  Sum_probs=100.2

Q ss_pred             CCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEE
Q 038577          276 LDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCL  355 (860)
Q Consensus       276 ~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~  355 (860)
                      ..++++|+..+.+.-.|..+++........ .++.+-+.- -|+.++.++.. |.+++.+.++|.....+.....--...
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy~-g~lYfl~~~tGs~~w~f~~~~~vk~~a   99 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCYS-GGLYFLCVKTGSQIWNFVILETVKVRA   99 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEcc-CcEEEEEecchhheeeeeehhhhccce
Confidence            456778999999999999998877543322 233333332 57778888887 999999999998887775433322334


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcc
Q 038577          356 AYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLF  421 (860)
Q Consensus       356 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~  421 (860)
                      ...+++..+..|+.|++.+..|..+..++...+-..+...+-++.|....|..+...|.+.--..+
T Consensus       100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~  165 (354)
T KOG4649|consen  100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKN  165 (354)
T ss_pred             EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccC
Confidence            567789999999999999999999998888876555544555566633345555555655444433

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.98  E-value=2.5e-09  Score=105.79  Aligned_cols=284  Identities=15%  Similarity=0.233  Sum_probs=188.8

Q ss_pred             EEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccC-------ceEEEEecCcccCeEEEEEcCCCCEEEEEeCCC
Q 038577          299 IHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRS-------ESYILKQQGHYFDVNCLAYSPDSQLLATGADDN  371 (860)
Q Consensus       299 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  371 (860)
                      +..+.+|+..|+.++--.+.+.++.++.+ .++++|.++.       ..+..+++.|..+|..+.|-.+.++++++  ||
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkD-KTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~  804 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKD-KTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG  804 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCC-ceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence            34566777788887777777777777655 9999999864       24667778999999999999998887754  78


Q ss_pred             cEEEEECCCCeeEEEeec--CCCceEEEEEeeC--CCEEEEE-eCCCcEEEEEccccceeeEeeCC----CCCcEEEEEE
Q 038577          372 KVKVWTVSSGFCFVTFTE--HTNAVTALHFMAN--NHSLLSA-SLDGTVRAWDLFRYRNFRTFTTP----SSRQFVSLAS  442 (860)
Q Consensus       372 ~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~--~~~l~s~-~~dg~i~~wd~~~~~~~~~~~~~----~~~~~~~~~~  442 (860)
                      .|.+||.--++.+..+..  ..+.+..+...++  ...++.+ +...+++++|.+...-...+...    ....+.++++
T Consensus       805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV  884 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV  884 (1034)
T ss_pred             cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence            999999877766653321  2223333333333  3344444 67889999999887665555432    2245789999


Q ss_pred             CCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEE-EEccCCcceeEEcccCCC
Q 038577          443 DQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRL-WNVFEGKGSVESFPHTHD  521 (860)
Q Consensus       443 ~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~~  521 (860)
                      .+.|+.++++-.+| .|.+.|.++|+.+...+.-.-....++- |..+.|+....|.++.+ |-..++....+..+...+
T Consensus       885 a~~GN~lAa~LSnG-ci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgimh~q~kpppep  962 (1034)
T KOG4190|consen  885 ADKGNKLAAALSNG-CIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEP  962 (1034)
T ss_pred             ccCcchhhHHhcCC-cEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCeeeeccCCCCcc
Confidence            99999999999998 9999999999998877655544544543 55667887778888888 877666544443333322


Q ss_pred             eEEEEEeeCCCEEEEEeCCCeEEEEeCCCC----ceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEE
Q 038577          522 VLTVVYRPDGRQLACSTLDGQIHFWDPLNG----ELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYIL  597 (860)
Q Consensus       522 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~  597 (860)
                      ..-+  -.-|.-|+++.....+.+|.-...    ..+..++..                  ...+..++++--|-..-++
T Consensus       963 ahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d------------------~f~G~lTala~LPLN~afL 1022 (1034)
T KOG4190|consen  963 AHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPD------------------EFPGTLTALAPLPLNCAFL 1022 (1034)
T ss_pred             hhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhcccccc------------------ccCCccceeeeccccchhh
Confidence            2111  113445677766666777742110    011111111                  1123468888888777777


Q ss_pred             EecCCCeEEE
Q 038577          598 AGGSSKYICM  607 (860)
Q Consensus       598 ~~~~dg~v~v  607 (860)
                      .|.+.|.|.+
T Consensus      1023 aGne~G~IaL 1032 (1034)
T KOG4190|consen 1023 AGNEHGAIAL 1032 (1034)
T ss_pred             ccCCCCceee
Confidence            7888888765

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.98  E-value=7.4e-09  Score=106.29  Aligned_cols=294  Identities=16%  Similarity=0.234  Sum_probs=198.7

Q ss_pred             eecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCC--CeEEEeecCCeEEE
Q 038577           90 VRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDS--NYLLVGSKDLAVRL  167 (860)
Q Consensus        90 ~~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~--~~l~s~~~dg~v~v  167 (860)
                      ++..+++.++..+|.|+-+|.+....+.+-|+.....   ++..++.+.  .-.|-...|+|..  .+-++......-.+
T Consensus        21 l~v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~---ppr~l~h~t--pw~vad~qws~h~a~~~wiVsts~qkaii   95 (1081)
T KOG0309|consen   21 LKVDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFT---PPRWLHHIT--PWQVADVQWSPHPAKPYWIVSTSNQKAII   95 (1081)
T ss_pred             EEecCcccceeeccccchhhhhhhcCeEEEeccCCCC---CceeeeccC--cchhcceecccCCCCceeEEecCcchhhh
Confidence            3457889999999999999999777777888776432   222222221  2236677888854  34444444556779


Q ss_pred             EeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcc
Q 038577          168 FYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPER  247 (860)
Q Consensus       168 wd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (860)
                      |++......   .....+.+|...|+.+.|.|....    .+++++.|-.+..||+.+...                   
T Consensus        96 wnlA~ss~~---aIef~lhghsraitd~n~~~q~pd----Vlatcsvdt~vh~wd~rSp~~-------------------  149 (1081)
T KOG0309|consen   96 WNLAKSSSN---AIEFVLHGHSRAITDINFNPQHPD----VLATCSVDTYVHAWDMRSPHR-------------------  149 (1081)
T ss_pred             hhhhcCCcc---ceEEEEecCccceeccccCCCCCc----ceeeccccccceeeeccCCCc-------------------
Confidence            998866333   566788999999999999887664    899999999999999987432                   


Q ss_pred             eeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCc-eeEEEEeecCceeEEEEEeeCCCEEEEEEc
Q 038577          248 RVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDF-VCIHLLSISREKITTAVFNELGNWLVFGCA  326 (860)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  326 (860)
                      .+..        +.........+.|+-....+.+.+....|.+||...+ ..+..++.+...+..+.|...-...+..++
T Consensus       150 p~ys--------~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~  221 (1081)
T KOG0309|consen  150 PFYS--------TSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS  221 (1081)
T ss_pred             ceee--------eecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC
Confidence            0111        1122334566777776666777778889999998755 566788888888999999876666666667


Q ss_pred             cCCcEEEEEccCceEEEEe-cCcccCeEEEEEcCCCCEEEEE--eCCCcEEE---------EECCC-CeeEEEeecCCCc
Q 038577          327 KLGQLLVWEWRSESYILKQ-QGHYFDVNCLAYSPDSQLLATG--ADDNKVKV---------WTVSS-GFCFVTFTEHTNA  393 (860)
Q Consensus       327 ~~g~i~v~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~i---------wd~~~-~~~~~~~~~~~~~  393 (860)
                      .||+|+.||.......... .....+|..-.+.|=|.-.++-  -.+..+.+         |+..+ ...+..|.+|.+.
T Consensus       222 ~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~  301 (1081)
T KOG0309|consen  222 NDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDV  301 (1081)
T ss_pred             CCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchH
Confidence            7799999998764332221 2234456555666643322211  11123333         33332 4678899999999


Q ss_pred             eEEEEEeeCC----------CEEEEEeCCCcEEEEEccc
Q 038577          394 VTALHFMANN----------HSLLSASLDGTVRAWDLFR  422 (860)
Q Consensus       394 v~~i~~~~~~----------~~l~s~~~dg~i~~wd~~~  422 (860)
                      |....|-..+          -.|++-+.|..+++|-+.+
T Consensus       302 V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  302 VLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             HHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            8877774321          2699999999999998853

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.97  E-value=1.4e-06  Score=84.35  Aligned_cols=277  Identities=16%  Similarity=0.195  Sum_probs=173.8

Q ss_pred             CeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEc----------CCCcEEEEEcccCeEEEEeecCC-------
Q 038577           32 NRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVD----------ENQRCHFINLHCHVVLHRVRFKY-------   94 (860)
Q Consensus        32 ~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~----------~d~~i~vwd~~~~~~~~~~~~~~-------   94 (860)
                      +++.++|..+++.+...  ..+-.-.+.+||||+.+++++          ..-.|.+||..+-.....+..+.       
T Consensus        17 ~rv~viD~d~~k~lGmi--~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMI--DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEE--EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEe--ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            58999999999987665  233445688999999998752          23468899999998888776222       


Q ss_pred             -ceeEEEECCCCCEEEEE---eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEee
Q 038577           95 -PVNAILFSPNGKYIAVG---TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYV  170 (860)
Q Consensus        95 -~v~~~~fspdg~~la~~---~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~  170 (860)
                       ....+++|.||+++.+.   ...+|.|-|+..++       .+..+. -.+. ..+--++ .+.+.+-|.||.+.-..+
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~k-------vv~ei~-~PGC-~~iyP~~-~~~F~~lC~DGsl~~v~L  164 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKK-------VVGEID-TPGC-WLIYPSG-NRGFSMLCGDGSLLTVTL  164 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTE-------EEEEEE-GTSE-EEEEEEE-TTEEEEEETTSCEEEEEE
T ss_pred             ccccceEEccCCcEEEEEccCCCCeEEEEECCCCc-------eeeeec-CCCE-EEEEecC-CCceEEEecCCceEEEEE
Confidence             23467899999999988   45789999999876       233333 2222 2221122 245788889999999999


Q ss_pred             cccccCcccccceEeecCCCcEE-EEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCccee
Q 038577          171 KEKLKGIHTNKPFLLLGHRDSVV-GCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRV  249 (860)
Q Consensus       171 ~~~~~~~~~~~~~~~~~h~~~i~-~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (860)
                      +...+.. ......+....+++. .-++...+.     .++-.+.+|.|+--++.....                  .-.
T Consensus       165 d~~Gk~~-~~~t~~F~~~~dp~f~~~~~~~~~~-----~~~F~Sy~G~v~~~dlsg~~~------------------~~~  220 (342)
T PF06433_consen  165 DADGKEA-QKSTKVFDPDDDPLFEHPAYSRDGG-----RLYFVSYEGNVYSADLSGDSA------------------KFG  220 (342)
T ss_dssp             TSTSSEE-EEEEEESSTTTS-B-S--EEETTTT-----EEEEEBTTSEEEEEEETTSSE------------------EEE
T ss_pred             CCCCCEe-EeeccccCCCCcccccccceECCCC-----eEEEEecCCEEEEEeccCCcc------------------ccc
Confidence            8552221 111112222222222 233444444     677788899999988877532                  112


Q ss_pred             eeEEeeee----ccccCCCCceEEEEecCCCCEEEEEEcC----------CeEEEEECCCceeEEEEeecCceeEEEEEe
Q 038577          250 KKWGLLRK----DDFSQAPSKVTACDYHRGLDMVVVGFSN----------GVFGLYQMPDFVCIHLLSISREKITTAVFN  315 (860)
Q Consensus       250 ~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~~----------g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s  315 (860)
                      ..|.+...    ..+.  ++.-.-+++++..++|++.-..          ..|.++|+.+++.+..+... .++.++..+
T Consensus       221 ~~~~~~t~~e~~~~Wr--PGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vs  297 (342)
T PF06433_consen  221 KPWSLLTDAEKADGWR--PGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVS  297 (342)
T ss_dssp             EEEESS-HHHHHTTEE--E-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEE
T ss_pred             CcccccCccccccCcC--CcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEc
Confidence            34544321    1111  2234456777777666654322          35889999999999988864 368899999


Q ss_pred             eCCCEEEEE-EccCCcEEEEEccCceEEEEecC
Q 038577          316 ELGNWLVFG-CAKLGQLLVWEWRSESYILKQQG  347 (860)
Q Consensus       316 ~~~~~l~~~-~~~~g~i~v~d~~~~~~~~~~~~  347 (860)
                      .+.+-++++ ...++.+.+||..+++.+.....
T Consensus       298 qd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  298 QDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             SSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             cCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            998876655 45568999999999999888754

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.95  E-value=1.2e-06  Score=90.80  Aligned_cols=299  Identities=15%  Similarity=0.141  Sum_probs=169.5

Q ss_pred             cCCCCEEEEE---------cCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCccccee
Q 038577           61 SPDGTFLLTV---------DENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAF  131 (860)
Q Consensus        61 spdg~~la~~---------~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~  131 (860)
                      |||+++++..         +..+.+.|+|+.+++..........+....|||||+.+|...++.|.+++..++..     
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~-----   75 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQE-----   75 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEE-----
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCe-----
Confidence            7899988874         23468899999998776655556789999999999999999999999999877642     


Q ss_pred             EEEEEee--c-------c---------CCCeEEEEEcCCCCeEEEeec-CCeEEEEeecccccCcccccceEeecCCCcE
Q 038577          132 ELIRTLA--D-------C---------NDKVTALNWSPDSNYLLVGSK-DLAVRLFYVKEKLKGIHTNKPFLLLGHRDSV  192 (860)
Q Consensus       132 ~~~~~~~--~-------h---------~~~v~~l~~s~d~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i  192 (860)
                         ..+.  |       -         -+.-..+-|||||++||.... +..|..+.+......   ..      .--.+
T Consensus        76 ---~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~---~~------~yp~~  143 (353)
T PF00930_consen   76 ---TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPP---DS------QYPEV  143 (353)
T ss_dssp             ---EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSS---TE------SS-EE
T ss_pred             ---EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCc---cc------cCCcc
Confidence               2222  2       0         122367889999999988654 445555544332000   00      00123


Q ss_pred             EEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEe
Q 038577          193 VGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDY  272 (860)
Q Consensus       193 ~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  272 (860)
                      ..+.+-.-|.     .-    ..-.+.++++.++...                       .+............+..+.|
T Consensus       144 ~~~~YPk~G~-----~n----p~v~l~v~~~~~~~~~-----------------------~~~~~~~~~~~~~yl~~v~W  191 (353)
T PF00930_consen  144 ESIRYPKAGD-----PN----PRVSLFVVDLASGKTT-----------------------ELDPPNSLNPQDYYLTRVGW  191 (353)
T ss_dssp             EEEE--BTTS------------EEEEEEEESSSTCCC-----------------------EE---HHHHTSSEEEEEEEE
T ss_pred             cccccCCCCC-----cC----CceEEEEEECCCCcEE-----------------------EeeeccccCCCccCccccee
Confidence            3344433332     11    1123556666654320                       00111112234557889999


Q ss_pred             cCCCCEEEEEEcC-----CeEEEEECCCceeEEEEeecC-c---eeEEEEEe-eCCCEEEEEEccCCcE--EEEEccCce
Q 038577          273 HRGLDMVVVGFSN-----GVFGLYQMPDFVCIHLLSISR-E---KITTAVFN-ELGNWLVFGCAKLGQL--LVWEWRSES  340 (860)
Q Consensus       273 ~~~~~~l~~~~~~-----g~i~~~~~~~~~~~~~~~~~~-~---~i~~~~~s-~~~~~l~~~~~~~g~i--~v~d~~~~~  340 (860)
                      .++++.+++...+     ..+.++|..++.......... .   ......+. +++..++.....+|.-  .+++...+.
T Consensus       192 ~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~  271 (353)
T PF00930_consen  192 SPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK  271 (353)
T ss_dssp             EETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE
T ss_pred             cCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc
Confidence            9999855544333     346667776665543333222 2   22355555 7887777777777754  445555555


Q ss_pred             EEEEecCcccCeEE-EEEcCCCCEEE-EEeCC----CcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEE
Q 038577          341 YILKQQGHYFDVNC-LAYSPDSQLLA-TGADD----NKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSA  409 (860)
Q Consensus       341 ~~~~~~~~~~~v~~-~~~s~~~~~l~-~~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~  409 (860)
                      .. .+....-.|.. +.++++++.+. ++..+    ..+...++..+.....+......-..+.|+|++++++..
T Consensus       272 ~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  272 PR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDT  345 (353)
T ss_dssp             EE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred             ee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence            33 44444555644 67888877665 44432    245555666244455555444443689999999887744

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.93  E-value=8e-06  Score=73.92  Aligned_cols=300  Identities=14%  Similarity=0.122  Sum_probs=162.4

Q ss_pred             eEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCe
Q 038577          208 RIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGV  287 (860)
Q Consensus       208 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~  287 (860)
                      +++.++..+.+..-|..++..                      .|+.....       ++.+-+.- -|+.++.|..+|.
T Consensus        25 ~v~igSHs~~~~avd~~sG~~----------------------~We~ilg~-------RiE~sa~v-vgdfVV~GCy~g~   74 (354)
T KOG4649|consen   25 LVVIGSHSGIVIAVDPQSGNL----------------------IWEAILGV-------RIECSAIV-VGDFVVLGCYSGG   74 (354)
T ss_pred             EEEEecCCceEEEecCCCCcE----------------------EeehhhCc-------eeeeeeEE-ECCEEEEEEccCc
Confidence            777888888888888777643                      56433221       22222222 4778999999999


Q ss_pred             EEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEE
Q 038577          288 FGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATG  367 (860)
Q Consensus       288 i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  367 (860)
                      +++.+.++++....+.....--......+++..+..++.+ ++.+..|.++...+.+.+...+...+-++.|....|..+
T Consensus        75 lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd-~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a  153 (354)
T KOG4649|consen   75 LYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHD-GNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAA  153 (354)
T ss_pred             EEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCC-CcEEEecccccceEEecccCCceeccceecCCCceEEEE
Confidence            9999999998887776655433445566777777777665 999999999998888765544444445556633344444


Q ss_pred             eCCCcEEEEECCCCeeEEEeec--CCCceEE--EEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCC---------
Q 038577          368 ADDNKVKVWTVSSGFCFVTFTE--HTNAVTA--LHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSS---------  434 (860)
Q Consensus       368 ~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~--i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~---------  434 (860)
                      ...|.+.--+.+++... ++-.  -.+++.+  ++.   +..+..+.-||.+.-++ ..++.+..+....+         
T Consensus       154 ~t~G~vlavt~~~~~~~-~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~GpIf~~Pc~s~  228 (354)
T KOG4649|consen  154 ITAGAVLAVTKNPYSST-EFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPATKGPIFMEPCESR  228 (354)
T ss_pred             eccceEEEEccCCCCcc-eehhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeecCCCceecccccCC
Confidence            55565554444433111 1111  1122221  111   22344455566666555 34444443332221         


Q ss_pred             CcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEc-C---CCCEEEEEeCCCcEEEEEccCCc
Q 038577          435 RQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFS-P---TNATLASSSWDKTVRLWNVFEGK  510 (860)
Q Consensus       435 ~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s-~---~~~~l~s~~~dg~i~iwd~~~~~  510 (860)
                      .....+.+...+-+.+.....+  -.+|..++|...+.+-...   ...+++ |   ..++|..++.||.+.|.-...  
T Consensus       229 Ps~q~i~~~~~~Cf~~~~p~~g--hL~w~~~~g~t~~vy~~p~---l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~--  301 (354)
T KOG4649|consen  229 PSCQQISLENENCFCAPLPIAG--HLLWATQSGTTLHVYLSPK---LRFDLHSPGISYPKLLRRSSGDGKVMILMTSK--  301 (354)
T ss_pred             CcceEEEEecCCeEEEeccccc--eEEEEecCCcEEEEEeCcc---cceeccCCCCcchhhhhhhcCCCcEEEEEecc--
Confidence            1112222222333322222222  3455555554333321110   112221 1   135677788899887764322  


Q ss_pred             ceeEEcccCCCeEEEE--------E-ee---CCCEEEEEeCCCeEEEEeCCCC
Q 038577          511 GSVESFPHTHDVLTVV--------Y-RP---DGRQLACSTLDGQIHFWDPLNG  551 (860)
Q Consensus       511 ~~~~~~~~~~~v~~~~--------~-s~---~~~~l~~~~~dg~i~iwd~~~~  551 (860)
                      .+.+...+.+.+..+.        | ||   +| +|+.|+.|..++.||+.++
T Consensus       302 sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~g-rl~igcRDdYv~cldl~~~  353 (354)
T KOG4649|consen  302 SLAEISSNGGELQNLEAIELSNEIFSSPVIIDG-RLLIGCRDDYVRCLDLDTW  353 (354)
T ss_pred             cccccccCCCccceEEEeecCcccccCCeEEcc-EEEEEEccCeEEEEecccc
Confidence            2333333333322222        1 22   44 5888889999999999875

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.92  E-value=2.1e-08  Score=90.00  Aligned_cols=201  Identities=16%  Similarity=0.244  Sum_probs=119.7

Q ss_pred             CCCEEEEEeCCCcEEEEEcccccee-eEeeCCCCCcEEEEEECCCCCEEEEE------ecCCCeEEEEECCCCceEEEec
Q 038577          402 NNHSLLSASLDGTVRAWDLFRYRNF-RTFTTPSSRQFVSLASDQSGEVICAG------TLDSFEIFVWSMKTGRLLDILS  474 (860)
Q Consensus       402 ~~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~i~v~d~~~~~~~~~~~  474 (860)
                      -++.+++++.||.+.+++.+..... +.+...+. ...+.+....++++.++      ..|  ..+.|+++..+.+..-.
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~-~~as~~~~~~~~~i~s~~~g~~n~~d--~~~a~~~~p~~t~~~~~  176 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHS-GSASRKICRHGNSILSGGCGNWNAQD--NFYANTLDPIKTLIPSK  176 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhhhhcccccc-cccccceeecccEEecCCcceEeecc--ceeeecccccccccccc
Confidence            4567999999999999997652211 11111111 11122222334444332      222  46677766544332222


Q ss_pred             CcccCeEEEEEcCCC-CEEEEEeCCCcEEEEEccCCcceeE-EcccCCCeEEEEEee-CCCEEEEEeCCCeEEEEeCCCC
Q 038577          475 GHEGPVHGLVFSPTN-ATLASSSWDKTVRLWNVFEGKGSVE-SFPHTHDVLTVVYRP-DGRQLACSTLDGQIHFWDPLNG  551 (860)
Q Consensus       475 ~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~  551 (860)
                      .....|++++-+|.. ..+++|+.||.+.+||.+....+.. +..|..+++.+-|+| ++..|+++++||.+--||..+ 
T Consensus       177 ~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~-  255 (319)
T KOG4714|consen  177 KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST-  255 (319)
T ss_pred             cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC-
Confidence            223449999999965 5577888899999999988754433 347999999999999 778999999999999999865 


Q ss_pred             ceeEEEecc----cccCCCccccccc--cccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEE
Q 038577          552 ELMYTIEGR----RDISGGRLMTDRR--SAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYD  609 (860)
Q Consensus       552 ~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd  609 (860)
                      +.+. +...    ..+..+....++.  ....+.....|++  |.--|..|++|++-+.|++++
T Consensus       256 ~~l~-i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sins--fDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  256 TFLS-ISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINS--FDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             ceEE-ecCccccccccccCCcccceEeeeccccccceeeee--eeccCceEEeccccceEEEec
Confidence            3332 2111    1111111111111  1111222233444  344688899999988888875

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.92  E-value=1.3e-06  Score=91.72  Aligned_cols=262  Identities=13%  Similarity=0.060  Sum_probs=159.8

Q ss_pred             EEEEEcCCeEEEEECCCceeEEEEeecC-------------ceeE-----------------EEEE---eeCCCEEEEEE
Q 038577          279 VVVGFSNGVFGLYQMPDFVCIHLLSISR-------------EKIT-----------------TAVF---NELGNWLVFGC  325 (860)
Q Consensus       279 l~~~~~~g~i~~~~~~~~~~~~~~~~~~-------------~~i~-----------------~~~~---s~~~~~l~~~~  325 (860)
                      +.+|+..|.++++-+++++.+..+....             ..+.                 .+.+   ..||+++++-.
T Consensus        69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find  148 (635)
T PRK02888         69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND  148 (635)
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence            5688889999999999888776654321             0111                 1111   13678888776


Q ss_pred             ccCCcEEEEEccCceEEEEec------Ccc---------cCeE-----EEEEcCCCCEEEEEe-CCCcEEEEECCCCeeE
Q 038577          326 AKLGQLLVWEWRSESYILKQQ------GHY---------FDVN-----CLAYSPDSQLLATGA-DDNKVKVWTVSSGFCF  384 (860)
Q Consensus       326 ~~~g~i~v~d~~~~~~~~~~~------~~~---------~~v~-----~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~  384 (860)
                      ..++.+...+++..+.-....      .|.         ..|.     .+-++|||+.+...+ ..+.+.+.|.++.+..
T Consensus       149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~  228 (635)
T PRK02888        149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVA  228 (635)
T ss_pred             CCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEE
Confidence            666777777776554433221      121         1111     122345665543322 2456777788877766


Q ss_pred             EEeecCCCceEEEEEeeCCCEEEEEeCCC----cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEE
Q 038577          385 VTFTEHTNAVTALHFMANNHSLLSASLDG----TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIF  460 (860)
Q Consensus       385 ~~~~~~~~~v~~i~~~~~~~~l~s~~~dg----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~  460 (860)
                      ..+.-. +....+.++++|+++++.+.+.    ++..-+..+......+....     .-.+.++|++..++  ++ .|.
T Consensus       229 ~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~-----iea~vkdGK~~~V~--gn-~V~  299 (635)
T PRK02888        229 WQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR-----IEEAVKAGKFKTIG--GS-KVP  299 (635)
T ss_pred             EEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH-----HHHhhhCCCEEEEC--CC-EEE
Confidence            665433 3556788899999888776322    22222222111111111110     01334578877763  33 899


Q ss_pred             EEECCC-----CceEEEecCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEEccCCcc-----------eeEEcccCCCeE
Q 038577          461 VWSMKT-----GRLLDILSGHEGPVHGLVFSPTNATLASSSW-DKTVRLWNVFEGKG-----------SVESFPHTHDVL  523 (860)
Q Consensus       461 v~d~~~-----~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~-----------~~~~~~~~~~v~  523 (860)
                      ++|..+     .+.+..+. -......+.++|||+++++++. +.+|.|.|+.+.+.           +.....-.....
T Consensus       300 VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPL  378 (635)
T PRK02888        300 VVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPL  378 (635)
T ss_pred             EEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcc
Confidence            999998     34555554 4556788999999999876665 89999999987552           122222344456


Q ss_pred             EEEEeeCCCEEEEEeCCCeEEEEeCCC
Q 038577          524 TVVYRPDGRQLACSTLDGQIHFWDPLN  550 (860)
Q Consensus       524 ~~~~s~~~~~l~~~~~dg~i~iwd~~~  550 (860)
                      ..+|.++|....+-.-|..|..|++.+
T Consensus       379 HTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        379 HTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             eEEECCCCCEEEeEeecceeEEEehHH
Confidence            788999998888888899999999876

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.91  E-value=2.7e-08  Score=95.43  Aligned_cols=165  Identities=20%  Similarity=0.183  Sum_probs=118.0

Q ss_pred             ceEEEEecCCCCEEEEEEcCCeEEEEECCCcee---EEEEeecCceeEEEEEeeCCCEEEEEEc--cCCcEEEEEccCce
Q 038577          266 KVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVC---IHLLSISREKITTAVFNELGNWLVFGCA--KLGQLLVWEWRSES  340 (860)
Q Consensus       266 ~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~--~~g~i~v~d~~~~~  340 (860)
                      .......+|.++++|++..+....+++......   ......-....+.+.|..+.....++-.  +...+.+|....+.
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            345566788899999999988877776543322   1122222334455666666655555433  33455566655543


Q ss_pred             EEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe-ecCCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 038577          341 YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTF-TEHTNAVTALHFMANNHSLLSASLDGTVRAWD  419 (860)
Q Consensus       341 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd  419 (860)
                      .. ..-+|-..+..++++||+++|+++..|..|++-.......+..+ -+|..-|..++.-++. .|+++|.|+++++||
T Consensus       144 ~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd  221 (390)
T KOG3914|consen  144 CE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWD  221 (390)
T ss_pred             cc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEe
Confidence            33 33589999999999999999999999999999887765555544 4699999999987654 589999999999999


Q ss_pred             ccccceeeEeeCC
Q 038577          420 LFRYRNFRTFTTP  432 (860)
Q Consensus       420 ~~~~~~~~~~~~~  432 (860)
                      +.+++...++...
T Consensus       222 ~~sgk~L~t~dl~  234 (390)
T KOG3914|consen  222 ITSGKLLDTCDLS  234 (390)
T ss_pred             cccCCcccccchh
Confidence            9999988766543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.88  E-value=3.9e-08  Score=94.35  Aligned_cols=164  Identities=14%  Similarity=0.156  Sum_probs=112.4

Q ss_pred             eEEEEEeeCCCEEEEEeCCCcEEEEEccccce----eeEeeCCCCCcEEEEEECCCCCEEEEEe--cCCCeEEEEECCCC
Q 038577          394 VTALHFMANNHSLLSASLDGTVRAWDLFRYRN----FRTFTTPSSRQFVSLASDQSGEVICAGT--LDSFEIFVWSMKTG  467 (860)
Q Consensus       394 v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~i~v~d~~~~  467 (860)
                      +..+..++.++.++.+..+....++++.....    ......+.  ...++.+..+...+.++.  .|.+.+.+|....+
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~--~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK--RPTAISFIREDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc--CcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence            34455667777777777777766766654332    22222222  234444444444443333  33335666666554


Q ss_pred             ceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeE-EcccCCCeEEEEEeeCCCEEEEEeCCCeEEEE
Q 038577          468 RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVE-SFPHTHDVLTVVYRPDGRQLACSTLDGQIHFW  546 (860)
Q Consensus       468 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  546 (860)
                      ... .+-||-..+++++++||+++++++..|..|++-.....-.+.. ..+|..-|..++.-++ ..|++++.|+++++|
T Consensus       143 ~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~W  220 (390)
T KOG3914|consen  143 RCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLW  220 (390)
T ss_pred             Ccc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEE
Confidence            443 4457999999999999999999999999999977655443333 3479999999999855 569999999999999


Q ss_pred             eCCCCceeEEEeccc
Q 038577          547 DPLNGELMYTIEGRR  561 (860)
Q Consensus       547 d~~~~~~~~~~~~~~  561 (860)
                      |+.+|+.+.+++...
T Consensus       221 d~~sgk~L~t~dl~s  235 (390)
T KOG3914|consen  221 DITSGKLLDTCDLSS  235 (390)
T ss_pred             ecccCCcccccchhH
Confidence            999999998776544

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.86  E-value=0.00032  Score=76.22  Aligned_cols=452  Identities=13%  Similarity=0.155  Sum_probs=232.8

Q ss_pred             cEEEe--CCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEE--eec
Q 038577           17 NAVLS--QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHR--VRF   92 (860)
Q Consensus        17 ~~~~s--dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~--~~~   92 (860)
                      .+..|  .|+.|+-...+.|++++-. +.. ... .-.+.++..+.+.+...++.++.++.+...++..+.....  ...
T Consensus       453 Tif~S~i~g~~lvQvTs~~iRl~ss~-~~~-~~W-~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~  529 (1096)
T KOG1897|consen  453 TIFCSTINGNQLVQVTSNSIRLVSSA-GLR-SEW-RPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEF  529 (1096)
T ss_pred             eEEEEccCCceEEEEecccEEEEcch-hhh-hcc-cCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeehee
Confidence            34444  5555555555678887765 222 111 2335566666777777788777777777777765552222  226


Q ss_pred             CCceeEEEECCCC------CEEEEE--eCCeEEEEeCCCCCcccceeEEEEEeec--cCCCeEEEEEcCCCCeEEEeecC
Q 038577           93 KYPVNAILFSPNG------KYIAVG--TGKLVQIWRSPGFKKEVFAFELIRTLAD--CNDKVTALNWSPDSNYLLVGSKD  162 (860)
Q Consensus        93 ~~~v~~~~fspdg------~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~s~d~~~l~s~~~d  162 (860)
                      ...|.|+.++|-|      +++|+|  .+-.+.+.-.+.....     +...+.+  -...|....|--|..+|.++..|
T Consensus       530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~-----~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgd  604 (1096)
T KOG1897|consen  530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILI-----THEQLSGEIIPRSILLTTFEGDIHYLLVALGD  604 (1096)
T ss_pred             cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCccee-----eeeccCCCccchheeeEEeeccceEEEEEcCC
Confidence            7889999999843      478888  4444444444433210     1111111  13345556666678999999999


Q ss_pred             CeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCC
Q 038577          163 LAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSP  242 (860)
Q Consensus       163 g~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~  242 (860)
                      |.+.-+.++.. .+........ .-...++.--.|+..+.+    .+++++ |+-..+|..+..-.              
T Consensus       605 G~l~~fv~d~~-tg~lsd~Kk~-~lGt~P~~Lr~f~sk~~t----~vfa~s-drP~viY~~n~kLv--------------  663 (1096)
T KOG1897|consen  605 GALLYFVLDIN-TGQLSDRKKV-TLGTQPISLRTFSSKSRT----AVFALS-DRPTVIYSSNGKLV--------------  663 (1096)
T ss_pred             ceEEEEEEEcc-cceEcccccc-ccCCCCcEEEEEeeCCce----EEEEeC-CCCEEEEecCCcEE--------------
Confidence            99988877665 2211111111 122345555566665552    444443 44444443332100              


Q ss_pred             CCCcceeeeEEeeeeccccCCCCceEE-EEec-CC-CCEEEEEEcCCeEEEEECCCceeE--EEEeecCceeEEEEEeeC
Q 038577          243 GTPERRVKKWGLLRKDDFSQAPSKVTA-CDYH-RG-LDMVVVGFSNGVFGLYQMPDFVCI--HLLSISREKITTAVFNEL  317 (860)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~-~~-~~~l~~~~~~g~i~~~~~~~~~~~--~~~~~~~~~i~~~~~s~~  317 (860)
                                 +..     -.-..+.. +.|+ +. .+.++. ...+.+.+..++.-+.+  +++.. ......+++.+.
T Consensus       664 -----------~sp-----ls~kev~~~c~f~s~a~~d~l~~-~~~~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~~  725 (1096)
T KOG1897|consen  664 -----------YSP-----LSLKEVNHMCPFNSDAYPDSLAS-ANGGALTIGTIDEIQKLHIRTVPL-GESPRRICYQES  725 (1096)
T ss_pred             -----------Eec-----cchHHhhhhcccccccCCceEEE-ecCCceEEEEecchhhcceeeecC-CCChhheEeccc
Confidence                       000     00000111 1111 11 122333 33444555555433322  22111 223444555442


Q ss_pred             CCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecC----CCc
Q 038577          318 GNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEH----TNA  393 (860)
Q Consensus       318 ~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~  393 (860)
                      ...+.+.+.. ..                .+..     .+.+  ...+     ..++++|-++-+.+....-.    ...
T Consensus       726 sl~~~v~s~r-~e----------------~~~~-----~~~e--e~~~-----s~l~vlD~nTf~vl~~hef~~~E~~~S  776 (1096)
T KOG1897|consen  726 SLTFGVLSNR-IE----------------SSAE-----YYGE--EYEV-----SFLRVLDQNTFEVLSSHEFERNETALS  776 (1096)
T ss_pred             ceEEEEEecc-cc----------------cchh-----hcCC--cceE-----EEEEEecCCceeEEeeccccccceeee
Confidence            2222222211 00                0000     0000  0010     13555665554433322111    113


Q ss_pred             eEEEEEeeC-CCEEEEEe----------CCCcEEEEEccccceeeEeeC-CCCCcEEEEEECCCCCEEEEEecCCCeEEE
Q 038577          394 VTALHFMAN-NHSLLSAS----------LDGTVRAWDLFRYRNFRTFTT-PSSRQFVSLASDQSGEVICAGTLDSFEIFV  461 (860)
Q Consensus       394 v~~i~~~~~-~~~l~s~~----------~dg~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v  461 (860)
                      +.++.|..| +.+++.|.          ..|.|.+|.+...+.++.... .-...+.++. --+|+++|.-+.   .|++
T Consensus       777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~-~fngkllA~In~---~vrL  852 (1096)
T KOG1897|consen  777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALV-EFNGKLLAGINQ---SVRL  852 (1096)
T ss_pred             eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehh-hhCCeEEEecCc---EEEE
Confidence            444456666 55666554          247788888777333333221 1122222222 124566554433   8999


Q ss_pred             EECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc---ccCCCeEEEEEeeCCCEEEEEe
Q 038577          462 WSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF---PHTHDVLTVVYRPDGRQLACST  538 (860)
Q Consensus       462 ~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~  538 (860)
                      |+..+.+.++.-..|..++..+...-.|..++.|.-=+.+.+-..+..+......   -++...+++.+-.+ ...+.+.
T Consensus       853 ye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~-d~ylgae  931 (1096)
T KOG1897|consen  853 YEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDD-DTYLGAE  931 (1096)
T ss_pred             EEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecC-ceEEeec
Confidence            9999998887777788999999999999999999888877776655544222222   36777888888744 4556666


Q ss_pred             CCCeEEEEeCC
Q 038577          539 LDGQIHFWDPL  549 (860)
Q Consensus       539 ~dg~i~iwd~~  549 (860)
                      .+|.+.+-..+
T Consensus       932 ~~gNlf~v~~d  942 (1096)
T KOG1897|consen  932 NSGNLFTVRKD  942 (1096)
T ss_pred             ccccEEEEEec
Confidence            78887777654

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.85  E-value=2.2e-09  Score=112.27  Aligned_cols=201  Identities=19%  Similarity=0.241  Sum_probs=149.5

Q ss_pred             EEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCC--cEEEEEc
Q 038577          343 LKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDG--TVRAWDL  420 (860)
Q Consensus       343 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg--~i~~wd~  420 (860)
                      ..+..|....+|++|+.+.++|++|+..|.|++|++.+|........|.++|+.+.-+.+|..+++.+.-.  -..+|++
T Consensus      1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred             hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence            34566778899999999999999999999999999999999999999999999999999998777655433  4678988


Q ss_pred             cc-cceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEe-cC---cccCeEEEEEcCCCCEEEEE
Q 038577          421 FR-YRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDIL-SG---HEGPVHGLVFSPTNATLASS  495 (860)
Q Consensus       421 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~-~~---h~~~v~~l~~s~~~~~l~s~  495 (860)
                      .. +.....+.     .-.++.|+..-..-++|+... ...+||++++.++.++ .+   ..-.-+...|+|+.+++.  
T Consensus      1175 ~s~~~~~Hsf~-----ed~~vkFsn~~q~r~~gt~~d-~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl-- 1246 (1516)
T KOG1832|consen 1175 SSTGGPRHSFD-----EDKAVKFSNSLQFRALGTEAD-DALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL-- 1246 (1516)
T ss_pred             ccccCcccccc-----ccceeehhhhHHHHHhccccc-ceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--
Confidence            64 22222222     235667777666666666666 8999999999877663 21   122236788999988776  


Q ss_pred             eCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecc
Q 038577          496 SWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGR  560 (860)
Q Consensus       496 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  560 (860)
                       .||  .+||++..+.+..+.... .-..-.|+|.|..++.-+     .|||+++.++++.++.-
T Consensus      1247 -ndG--vLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L 1302 (1516)
T KOG1832|consen 1247 -NDG--VLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL 1302 (1516)
T ss_pred             -eCc--eeeeeccHHHHhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHHhcCccc
Confidence             466  689998876554444333 223346999999888765     59999999888776543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.85  E-value=1.1e-07  Score=87.55  Aligned_cols=252  Identities=15%  Similarity=0.275  Sum_probs=167.3

Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-----eEEEeecCC------------CceEEEEEeeCC--CEEEEE
Q 038577          349 YFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGF-----CFVTFTEHT------------NAVTALHFMANN--HSLLSA  409 (860)
Q Consensus       349 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~i~~~~~~--~~l~s~  409 (860)
                      ...|+++.|...|.++++|...|.|.+|.-+...     ....+++|.            ..|..+.|..++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4568999999999999999999999999755322     222344443            357788887654  467777


Q ss_pred             eCCCcEEEEEccccc------------------------------------------eeeEeeCCCCCcEEEEEECCCCC
Q 038577          410 SLDGTVRAWDLFRYR------------------------------------------NFRTFTTPSSRQFVSLASDQSGE  447 (860)
Q Consensus       410 ~~dg~i~~wd~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~  447 (860)
                      +.|.+|++|.+....                                          +.+.....++..+.++.+..|..
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            889999999984321                                          00111123344577888888888


Q ss_pred             EEEEEecCCCeEEEEECCCCce---EEEecCcc-----cCeEEEEEcCCC-CEEEEEeCCCcEEEEEccCCccee-----
Q 038577          448 VICAGTLDSFEIFVWSMKTGRL---LDILSGHE-----GPVHGLVFSPTN-ATLASSSWDKTVRLWNVFEGKGSV-----  513 (860)
Q Consensus       448 ~l~~~~~~~~~i~v~d~~~~~~---~~~~~~h~-----~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~-----  513 (860)
                      .++++..-  .|-+|++.-...   +..++.|.     .-|++..|+|.. ..+...+..|.|++-|++....+.     
T Consensus       186 t~lSaDdL--rINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         186 TLLSADDL--RINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             eeeeccce--eeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            87766443  799999874321   23334443     457888999964 456667778999999997433111     


Q ss_pred             -E----------EcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCC-ceeEEEecccccCCCccccccccccccCCC
Q 038577          514 -E----------SFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNG-ELMYTIEGRRDISGGRLMTDRRSAANSSSG  581 (860)
Q Consensus       514 -~----------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  581 (860)
                       +          +.+-...|..+.|+++|+++++-+. -++++||++.. .++.+++.|.+....      ...  .-..
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~------l~d--~YEn  334 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDE------LND--VYEN  334 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHH------HHh--hhhc
Confidence             0          0123456888999999999988764 47999999754 577777666532100      000  0001


Q ss_pred             CcE---EEEEEecCCCEEEEecCCCeEEEEECC
Q 038577          582 KCF---TTLCYSADGSYILAGGSSKYICMYDVA  611 (860)
Q Consensus       582 ~~i---~~l~~s~~g~~l~~~~~dg~v~vwd~~  611 (860)
                      .+|   -.+.||.|.+.+++|+-....-+|-+.
T Consensus       335 DaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         335 DAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             cceeeeEEEEecCCcccccccccccceeeeccc
Confidence            112   457899999999999988888777644

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.82  E-value=2.4e-05  Score=76.07  Aligned_cols=264  Identities=13%  Similarity=0.138  Sum_probs=167.9

Q ss_pred             CcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeeEEEeecCCC------
Q 038577          329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGA----------DDNKVKVWTVSSGFCFVTFTEHTN------  392 (860)
Q Consensus       329 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~------  392 (860)
                      +.+.++|..+++.+..+..-.  .-.+..+|+++.+++++          ..-.|.+||..+-....++.-...      
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~--~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGF--LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEES--SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeeccc--CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            578899999998877765422  34477899999888753          234699999999887776543322      


Q ss_pred             -ceEEEEEeeCCCEEEEEe--CCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECC-CCc
Q 038577          393 -AVTALHFMANNHSLLSAS--LDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK-TGR  468 (860)
Q Consensus       393 -~v~~i~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~-~~~  468 (860)
                       ....+.++.|+++++...  -.-.|.+.|+...+...++..+..   ..+-.++. +-+..-|.|| .+..+.+. .|+
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC---~~iyP~~~-~~F~~lC~DG-sl~~v~Ld~~Gk  169 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC---WLIYPSGN-RGFSMLCGDG-SLLTVTLDADGK  169 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE---EEEEEEET-TEEEEEETTS-CEEEEEETSTSS
T ss_pred             ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE---EEEEecCC-CceEEEecCC-ceEEEEECCCCC
Confidence             122356778888777553  445788999999998888887753   22222232 3455666677 67777776 455


Q ss_pred             eEEEe----cCcccC-eEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeE--Ec--c--------cCCCeEEEEEeeCC
Q 038577          469 LLDIL----SGHEGP-VHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVE--SF--P--------HTHDVLTVVYRPDG  531 (860)
Q Consensus       469 ~~~~~----~~h~~~-v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~--~--------~~~~v~~~~~s~~~  531 (860)
                      .....    .....+ +..-+++..+..++..+.+|.|+--|+........  +.  .        ..+.-.-+++++..
T Consensus       170 ~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~  249 (342)
T PF06433_consen  170 EAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAAS  249 (342)
T ss_dssp             EEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTT
T ss_pred             EeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecccc
Confidence            54221    111222 22344555566677688999999988876652211  10  0        12233446777766


Q ss_pred             CEEEEEeC--------CC--eEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCC-EEEEe-
Q 038577          532 RQLACSTL--------DG--QIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGS-YILAG-  599 (860)
Q Consensus       532 ~~l~~~~~--------dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~-  599 (860)
                      +.|++.-.        |+  .|-+||+.+++.+..++....                     +.++..+.|.+ +|++. 
T Consensus       250 ~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~---------------------~~Si~Vsqd~~P~L~~~~  308 (342)
T PF06433_consen  250 GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP---------------------IDSIAVSQDDKPLLYALS  308 (342)
T ss_dssp             TEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE---------------------ESEEEEESSSS-EEEEEE
T ss_pred             CeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc---------------------cceEEEccCCCcEEEEEc
Confidence            65555321        11  488889999999999987654                     78999999887 55544 


Q ss_pred             cCCCeEEEEECCCceEEEEEe
Q 038577          600 GSSKYICMYDVADQVLLRRFQ  620 (860)
Q Consensus       600 ~~dg~v~vwd~~~~~~~~~~~  620 (860)
                      ..++.+.+||..+|+++++..
T Consensus       309 ~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  309 AGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             TTTTEEEEEETTT--EEEEE-
T ss_pred             CCCCeEEEEeCcCCcEEeehh
Confidence            468999999999999998765

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.82  E-value=0.00024  Score=78.96  Aligned_cols=245  Identities=13%  Similarity=0.162  Sum_probs=150.5

Q ss_pred             ccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEeC-CeEEEEeC----CCCCc
Q 038577           52 SSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTG-KLVQIWRS----PGFKK  126 (860)
Q Consensus        52 ~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~~-~~i~iwd~----~~~~~  126 (860)
                      ...|.++.|..++.-++.+...|.|.+.|.++......-.....|.+++||||++.+|.... +++.+-.-    -..+.
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~  147 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP  147 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence            36899999999999999999999999999888765554446889999999999999999844 55544322    11110


Q ss_pred             c-----------cceeE-EEEEeecc---------------------CCCeEEEEEcCCCCeEEEe-----ecCCeEEEE
Q 038577          127 E-----------VFAFE-LIRTLADC---------------------NDKVTALNWSPDSNYLLVG-----SKDLAVRLF  168 (860)
Q Consensus       127 ~-----------~~~~~-~~~~~~~h---------------------~~~v~~l~~s~d~~~l~s~-----~~dg~v~vw  168 (860)
                      .           ...|- ....+.|.                     .+.=+.+.|--||.++|+.     ...+.++||
T Consensus       148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~  227 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY  227 (1265)
T ss_pred             cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence            0           00000 00011111                     1112458999999999983     223789999


Q ss_pred             eecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEc---CCccEEEeeecCCCCCCccccCCCCCCCCCCC
Q 038577          169 YVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIA---RDCYMFSWGFSGNDGKIDETMEDSEPPSPGTP  245 (860)
Q Consensus       169 d~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~---~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  245 (860)
                      |.+..       ....-....+.-.+++|-|.|.     .+++..   .|+.|.++.-++-..                 
T Consensus       228 drEg~-------Lns~se~~~~l~~~LsWkPsgs-----~iA~iq~~~sd~~IvffErNGL~h-----------------  278 (1265)
T KOG1920|consen  228 DREGA-------LNSTSEPVEGLQHSLSWKPSGS-----LIAAIQCKTSDSDIVFFERNGLRH-----------------  278 (1265)
T ss_pred             cccch-------hhcccCcccccccceeecCCCC-----eEeeeeecCCCCcEEEEecCCccc-----------------
Confidence            98832       1122222233345689999888     777664   355788887665322                 


Q ss_pred             cceeeeEEeeeeccccCCCCceEEEEecCCCCEEEE---EEcCCeEEEEECCCceeE--EEEeecCceeEEEEEeeCCCE
Q 038577          246 ERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVV---GFSNGVFGLYQMPDFVCI--HLLSISREKITTAVFNELGNW  320 (860)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---~~~~g~i~~~~~~~~~~~--~~~~~~~~~i~~~~~s~~~~~  320 (860)
                          +.+    ...++.....+..++|+.+++.|++   ......|++|-..+..--  +.+.......  +.|+|....
T Consensus       279 ----g~f----~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~  348 (1265)
T KOG1920|consen  279 ----GEF----VLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEK  348 (1265)
T ss_pred             ----ccc----ccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCce
Confidence                011    1122333445899999999999998   444556999998765432  3333333222  777774433


Q ss_pred             EEEEEccCCcEEEEE
Q 038577          321 LVFGCAKLGQLLVWE  335 (860)
Q Consensus       321 l~~~~~~~g~i~v~d  335 (860)
                      -+.....+|...+++
T Consensus       349 ~L~v~~~sG~~~v~~  363 (1265)
T KOG1920|consen  349 TLHVLRESGQRLVRD  363 (1265)
T ss_pred             eEEEEecCCcEEEEE
Confidence            222222335555554

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.79  E-value=1e-05  Score=85.12  Aligned_cols=214  Identities=13%  Similarity=0.081  Sum_probs=135.8

Q ss_pred             cCCCCEEE-EEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEcc---CCcEEEEEccCceEEEEecCc
Q 038577          273 HRGLDMVV-VGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK---LGQLLVWEWRSESYILKQQGH  348 (860)
Q Consensus       273 ~~~~~~l~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~---~g~i~v~d~~~~~~~~~~~~~  348 (860)
                      .|||+.+. ..-..+.+.+.|..+.+...++.... ....+.++++|+++++++.+   ...+...+..+......+.-.
T Consensus       201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~  279 (635)
T PRK02888        201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA  279 (635)
T ss_pred             CCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence            34555443 22334677788888877777766655 55788999999999988732   233444433332222221110


Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----C-eeEEEeecCCCceEEEEEeeCCCEEEEEe-CCCcEEEEEccc
Q 038577          349 YFDVNCLAYSPDSQLLATGADDNKVKVWTVSS----G-FCFVTFTEHTNAVTALHFMANNHSLLSAS-LDGTVRAWDLFR  422 (860)
Q Consensus       349 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~----~-~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~i~~wd~~~  422 (860)
                      .  +  -++.++|++...+  ++.|.+.|..+    + ..+..+ .-......+.++|||+++++++ .+.++.+.|+.+
T Consensus       280 ~--i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k  352 (635)
T PRK02888        280 R--I--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK  352 (635)
T ss_pred             H--H--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence            0  0  1345578776653  57899999988    3 344444 4567789999999999887665 588999999987


Q ss_pred             cce------------eeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCC----------CceEEEecCcccCe
Q 038577          423 YRN------------FRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT----------GRLLDILSGHEGPV  480 (860)
Q Consensus       423 ~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~----------~~~~~~~~~h~~~v  480 (860)
                      .+.            ..+...  .......+|+++|....+-.-|+ .|..||+..          ...+..+.-|-.+-
T Consensus       353 ~k~~~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~aytslf~ds-qv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pg  429 (635)
T PRK02888        353 LDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGNAYTTLFLDS-QIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPG  429 (635)
T ss_pred             hhhhhhccCCccceEEEeecc--CCCcceEEECCCCCEEEeEeecc-eeEEEehHHHHHHhccccCCcceecccCCCccc
Confidence            653            222222  23446778899998777777777 999999886          33444454443332


Q ss_pred             E-----EEEEcCCCCEEEEEeC
Q 038577          481 H-----GLVFSPTNATLASSSW  497 (860)
Q Consensus       481 ~-----~l~~s~~~~~l~s~~~  497 (860)
                      .     .=.-.|||++|++...
T Consensus       430 h~~~~~g~t~~~dgk~l~~~nk  451 (635)
T PRK02888        430 HNHASMGETKEADGKWLVSLNK  451 (635)
T ss_pred             eeeecCCCcCCCCCCEEEEccc
Confidence            2     2223678999988753

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.78  E-value=5.7e-07  Score=83.01  Aligned_cols=274  Identities=16%  Similarity=0.190  Sum_probs=170.9

Q ss_pred             CCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCC------------CcEEEEEEccCCCCCccce
Q 038577          141 NDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHR------------DSVVGCFFSVDKKTDKVNR  208 (860)
Q Consensus       141 ~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~------------~~i~~~~~~~~~~~~~~~~  208 (860)
                      .+.|+++.|...|.||++|...|.|.++.-... .+....-...+++|.            ..|..+.|..++.   ...
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s-~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~---r~h  101 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKS-YGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTG---RNH  101 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccc-cccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCC---cce
Confidence            456899999999999999999999999987665 221112223455554            3466677755543   226


Q ss_pred             EEEEcCCccEEEeeecCCCCCCccccCCCCC---CCCCC--Ccceee----------eEEeeeeccccCCCCceEEEEec
Q 038577          209 IYTIARDCYMFSWGFSGNDGKIDETMEDSEP---PSPGT--PERRVK----------KWGLLRKDDFSQAPSKVTACDYH  273 (860)
Q Consensus       209 l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~  273 (860)
                      ++..+.|.+|++|.+.....+......-.+.   +..+.  ....+.          ..-...+.....|...+.++.+.
T Consensus       102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N  181 (460)
T COG5170         102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN  181 (460)
T ss_pred             EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence            7788889999999998764433221111110   00000  000000          00011122335677789999999


Q ss_pred             CCCCEEEEEEcCCeEEEEECCCcee---EEEEeecC-----ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEE---
Q 038577          274 RGLDMVVVGFSNGVFGLYQMPDFVC---IHLLSISR-----EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYI---  342 (860)
Q Consensus       274 ~~~~~l~~~~~~g~i~~~~~~~~~~---~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~---  342 (860)
                      .|.+.++++ .+=.|.+|++.-...   +..++.+.     .-|++..|+|....++.-++..|.|++-|++.....   
T Consensus       182 sD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~  260 (460)
T COG5170         182 SDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS  260 (460)
T ss_pred             Cchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence            998877654 456788998753221   22223332     358889999977655555555599999998843211   


Q ss_pred             ---EE----------ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeeEEEeecC------------CCce--
Q 038577          343 ---LK----------QQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS-GFCFVTFTEH------------TNAV--  394 (860)
Q Consensus       343 ---~~----------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~------------~~~v--  394 (860)
                         ..          +.+-...|..+.|+++|+++++-+. -+|++||.+. ..++.++.-|            ...|  
T Consensus       261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifd  339 (460)
T COG5170         261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFD  339 (460)
T ss_pred             hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceee
Confidence               00          1122346788999999999988766 5899999874 3455555333            2233  


Q ss_pred             -EEEEEeeCCCEEEEEeCCCcEEEEEc
Q 038577          395 -TALHFMANNHSLLSASLDGTVRAWDL  420 (860)
Q Consensus       395 -~~i~~~~~~~~l~s~~~dg~i~~wd~  420 (860)
                       ..+.|+.|.+.+++|+.....-+|-.
T Consensus       340 kFeisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         340 KFEISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             eEEEEecCCcccccccccccceeeecc
Confidence             34678888888999988877777653

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.76  E-value=1.5e-05  Score=86.29  Aligned_cols=277  Identities=11%  Similarity=0.096  Sum_probs=168.9

Q ss_pred             CCEEEEEEcCCeEEEEECCCceeEEEEeecCce------eEEEEEeeCC-CEEEEEEccCCcEEEEEccCceEEEEecCc
Q 038577          276 LDMVVVGFSNGVFGLYQMPDFVCIHLLSISREK------ITTAVFNELG-NWLVFGCAKLGQLLVWEWRSESYILKQQGH  348 (860)
Q Consensus       276 ~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~------i~~~~~s~~~-~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~  348 (860)
                      +..+++++.++.+.-+|..+++.+-........      +..-...-.+ ..++++..+ |.|..+|.++++.+.+....
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~-g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFD-GRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCC-CeEEEEECCCCCEeeeecCC
Confidence            456778888899999999999888766543320      0000001112 556655544 99999999999998887543


Q ss_pred             ccC-----e-EEEEEcCCCCEEEEEe---------CCCcEEEEECCCCeeEEEeecCCC--------------------c
Q 038577          349 YFD-----V-NCLAYSPDSQLLATGA---------DDNKVKVWTVSSGFCFVTFTEHTN--------------------A  393 (860)
Q Consensus       349 ~~~-----v-~~~~~s~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~--------------------~  393 (860)
                      ...     + ....+.  +..++.++         .+|.+..+|..+|+.+-.+.....                    .
T Consensus       140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~  217 (488)
T cd00216         140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT  217 (488)
T ss_pred             CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence            221     1 111222  23455554         367899999999998877654211                    0


Q ss_pred             e-EEEEEeeCCCEEEEEeCCC------------------cEEEEEccccceeeEeeCCCCCc-----EEEEEE----CCC
Q 038577          394 V-TALHFMANNHSLLSASLDG------------------TVRAWDLFRYRNFRTFTTPSSRQ-----FVSLAS----DQS  445 (860)
Q Consensus       394 v-~~i~~~~~~~~l~s~~~dg------------------~i~~wd~~~~~~~~~~~~~~~~~-----~~~~~~----~~~  445 (860)
                      + ...++.+.+..++.++.++                  .+..+|..+++....+.......     .....+    .-+
T Consensus       218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~  297 (488)
T cd00216         218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD  297 (488)
T ss_pred             ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence            1 1234444556777776665                  69999999999888776432110     000011    123


Q ss_pred             CC---EEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEE------------------eCCCcEEEE
Q 038577          446 GE---VICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASS------------------SWDKTVRLW  504 (860)
Q Consensus       446 ~~---~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~------------------~~dg~i~iw  504 (860)
                      |.   .+++++.++ .++.+|.++|+.+......   ...++.+|  ..+..+                  ..+|.+.-.
T Consensus       298 g~~~~~V~~g~~~G-~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~Al  371 (488)
T cd00216         298 GKPVPAIVHAPKNG-FFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAAL  371 (488)
T ss_pred             CCeeEEEEEECCCc-eEEEEECCCCcEeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEE
Confidence            33   566777777 9999999999988765421   11233343  222221                  235778888


Q ss_pred             EccCCcceeEEcccC--------CCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEeccc
Q 038577          505 NVFEGKGSVESFPHT--------HDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRR  561 (860)
Q Consensus       505 d~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  561 (860)
                      |..+++.+.......        .+...-.....+..|++++.||.++.+|..+|+.+.+.+...
T Consensus       372 D~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~  436 (488)
T cd00216         372 DPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRTPS  436 (488)
T ss_pred             eCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEECCC
Confidence            888887555443220        111111112256789999999999999999999999887543

The alignment model contains an 8-bladed beta-propeller.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.72  E-value=2.6e-05  Score=84.49  Aligned_cols=276  Identities=12%  Similarity=0.124  Sum_probs=168.2

Q ss_pred             eEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceE--EEEecCCCCEEEEEEcC
Q 038577          208 RIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVT--ACDYHRGLDMVVVGFSN  285 (860)
Q Consensus       208 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~~  285 (860)
                      .++.++.++.+...|..+++.                      .|..............+.  .+... ++..+++++.+
T Consensus        63 ~vy~~~~~g~l~AlD~~tG~~----------------------~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~  119 (488)
T cd00216          63 DMYFTTSHSALFALDAATGKV----------------------LWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFD  119 (488)
T ss_pred             EEEEeCCCCcEEEEECCCChh----------------------hceeCCCCCccccccccccCCcEEc-cCCeEEEecCC
Confidence            688888899999999888754                      565433221000000000  01111 23678889999


Q ss_pred             CeEEEEECCCceeEEEEeecCce-----eE-EEEEeeCCCEEEEEEc--------cCCcEEEEEccCceEEEEecCcccC
Q 038577          286 GVFGLYQMPDFVCIHLLSISREK-----IT-TAVFNELGNWLVFGCA--------KLGQLLVWEWRSESYILKQQGHYFD  351 (860)
Q Consensus       286 g~i~~~~~~~~~~~~~~~~~~~~-----i~-~~~~s~~~~~l~~~~~--------~~g~i~v~d~~~~~~~~~~~~~~~~  351 (860)
                      |.+.-+|..+++.+-........     +. ...+.  +..+++++.        .+|.+..+|..+++.+.+.......
T Consensus       120 g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~  197 (488)
T cd00216         120 GRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPD  197 (488)
T ss_pred             CeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCC
Confidence            99999999999998776654321     11 11222  234444432        2478999999999988876432110


Q ss_pred             --------------------e-EEEEEcCCCCEEEEEeCCC------------------cEEEEECCCCeeEEEeecCCC
Q 038577          352 --------------------V-NCLAYSPDSQLLATGADDN------------------KVKVWTVSSGFCFVTFTEHTN  392 (860)
Q Consensus       352 --------------------v-~~~~~s~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~  392 (860)
                                          + ...++.+.+..++.++.++                  .+.-+|..+|+.+-.+..-..
T Consensus       198 ~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~  277 (488)
T cd00216         198 PNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPH  277 (488)
T ss_pred             cCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCC
Confidence                                1 1234455566788887665                  699999999999887642211


Q ss_pred             ceE------EEEEe----eCCC---EEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEe------
Q 038577          393 AVT------ALHFM----ANNH---SLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGT------  453 (860)
Q Consensus       393 ~v~------~i~~~----~~~~---~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------  453 (860)
                      ...      ...+.    -++.   .++.++.+|.+...|..+++.+.......    ..++.+|  ..++++.      
T Consensus       278 ~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~----~~~~~~~--~~vyv~~~~~~~~  351 (488)
T cd00216         278 DLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE----QPMAYDP--GLVYLGAFHIPLG  351 (488)
T ss_pred             CCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec----cccccCC--ceEEEcccccccc
Confidence            111      11111    1232   57788889999999999999887665321    1223334  3333321      


Q ss_pred             -----------cCCCeEEEEECCCCceEEEecCcc--------cCe--EEEEEcCCCCEEEEEeCCCcEEEEEccCCcce
Q 038577          454 -----------LDSFEIFVWSMKTGRLLDILSGHE--------GPV--HGLVFSPTNATLASSSWDKTVRLWNVFEGKGS  512 (860)
Q Consensus       454 -----------~~~~~i~v~d~~~~~~~~~~~~h~--------~~v--~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  512 (860)
                                 ...+.+.-+|+.+|+.+-......        .+.  ..+..  .+..++.++.||.++.+|..+++.+
T Consensus       352 ~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~l  429 (488)
T cd00216         352 LPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKEL  429 (488)
T ss_pred             CcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCcee
Confidence                       112378899999998877664321        111  11222  4678888899999999999999876


Q ss_pred             eEEc
Q 038577          513 VESF  516 (860)
Q Consensus       513 ~~~~  516 (860)
                      ....
T Consensus       430 W~~~  433 (488)
T cd00216         430 WKFR  433 (488)
T ss_pred             eEEE
Confidence            6654

The alignment model contains an 8-bladed beta-propeller.

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.69  E-value=7e-08  Score=90.38  Aligned_cols=146  Identities=14%  Similarity=0.236  Sum_probs=116.7

Q ss_pred             eEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCC----cceeEEcccCCCeEEEEEee-CCC
Q 038577          458 EIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEG----KGSVESFPHTHDVLTVVYRP-DGR  532 (860)
Q Consensus       458 ~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~s~-~~~  532 (860)
                      .+-+-|+.+|... .+. ..+.|.++.|...++++..|...|.|..+|++..    .......-|.+.|+++..-. +++
T Consensus       235 qv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q  312 (425)
T KOG2695|consen  235 QVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQ  312 (425)
T ss_pred             eeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccc
Confidence            6888888876533 233 5678899999988999999999999999999876    33455667999999988776 788


Q ss_pred             EEEEEeCCCeEEEEeCCCCce---eEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEE
Q 038577          533 QLACSTLDGQIHFWDPLNGEL---MYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYD  609 (860)
Q Consensus       533 ~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd  609 (860)
                      +|++.+.+|+|++||++--++   +.+..+|....                  .-.-+-..+....+++++.|...+||.
T Consensus       313 ~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~------------------a~l~~~v~~eeg~I~s~GdDcytRiWs  374 (425)
T KOG2695|consen  313 KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLS------------------AYLPAHVKEEEGSIFSVGDDCYTRIWS  374 (425)
T ss_pred             eEeeccCcCceeEeeehhhhcccceeeeecccccc------------------cccccccccccceEEEccCeeEEEEEe
Confidence            999999999999999987666   88888886531                  122334556677899999999999999


Q ss_pred             CCCceEEEEEeecc
Q 038577          610 VADQVLLRRFQITH  623 (860)
Q Consensus       610 ~~~~~~~~~~~~~~  623 (860)
                      +..|.++.+++.+.
T Consensus       375 l~~ghLl~tipf~~  388 (425)
T KOG2695|consen  375 LDSGHLLCTIPFPY  388 (425)
T ss_pred             cccCceeeccCCCC
Confidence            99999998776543

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.64  E-value=6.5e-05  Score=74.63  Aligned_cols=272  Identities=12%  Similarity=0.077  Sum_probs=140.8

Q ss_pred             cEEEe-CCCEEEeeeC----CeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee
Q 038577           17 NAVLS-QNTKLISPVG----NRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR   91 (860)
Q Consensus        17 ~~~~s-dg~~l~~~~~----~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~   91 (860)
                      +-+|. ||+.|+++++    ..+.+.|+.+++...+..+-........++|+++.++......+++-.|+.+.+......
T Consensus        40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~  119 (386)
T PF14583_consen   40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE  119 (386)
T ss_dssp             S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred             CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence            35688 9988888654    359999999999988875544445567788999998887666789999999987765555


Q ss_pred             -cCCceeEEEE--CCCCCEEEEE----eC-------------------CeEEEEeCCCCCcccceeEEEEEeeccCCCeE
Q 038577           92 -FKYPVNAILF--SPNGKYIAVG----TG-------------------KLVQIWRSPGFKKEVFAFELIRTLADCNDKVT  145 (860)
Q Consensus        92 -~~~~v~~~~f--spdg~~la~~----~~-------------------~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~  145 (860)
                       ....+....|  +.|++.++..    .+                   ..|.--|+.+++        ...+..-...+.
T Consensus       120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--------~~~v~~~~~wlg  191 (386)
T PF14583_consen  120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--------RKVVFEDTDWLG  191 (386)
T ss_dssp             --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----------EEEEEEESS-EE
T ss_pred             CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc--------eeEEEecCcccc
Confidence             3444444566  4567777655    11                   245556777765        344444567788


Q ss_pred             EEEEcCCCCeEEEeecCC-----eEEEEeecccccCcccccceEeecC--CCcEEEEEEccCCCCCccceEEEEc-----
Q 038577          146 ALNWSPDSNYLLVGSKDL-----AVRLFYVKEKLKGIHTNKPFLLLGH--RDSVVGCFFSVDKKTDKVNRIYTIA-----  213 (860)
Q Consensus       146 ~l~~s~d~~~l~s~~~dg-----~v~vwd~~~~~~~~~~~~~~~~~~h--~~~i~~~~~~~~~~~~~~~~l~s~~-----  213 (860)
                      .+.|||....+++-|..|     .-|||-+......     ...+..|  ...+..=.|.|||.     .|.--+     
T Consensus       192 H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~-----~~~v~~~~~~e~~gHEfw~~DG~-----~i~y~~~~~~~  261 (386)
T PF14583_consen  192 HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN-----VKKVHRRMEGESVGHEFWVPDGS-----TIWYDSYTPGG  261 (386)
T ss_dssp             EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS--------EESS---TTEEEEEEEE-TTSS------EEEEEEETTT
T ss_pred             CcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc-----ceeeecCCCCcccccccccCCCC-----EEEEEeecCCC
Confidence            999999776555544333     2478887765222     1112222  23344456889988     444322     


Q ss_pred             CCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCC-------
Q 038577          214 RDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNG-------  286 (860)
Q Consensus       214 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g-------  286 (860)
                      .+..|.-.+..++..                      .+       +... .....+..+++|++++--+.|.       
T Consensus       262 ~~~~i~~~d~~t~~~----------------------~~-------~~~~-p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~  311 (386)
T PF14583_consen  262 QDFWIAGYDPDTGER----------------------RR-------LMEM-PWCSHFMSSPDGKLFVGDGGDAPVDVADA  311 (386)
T ss_dssp             --EEEEEE-TTT--E----------------------EE-------EEEE--SEEEEEE-TTSSEEEEEE----------
T ss_pred             CceEEEeeCCCCCCc----------------------eE-------EEeC-CceeeeEEcCCCCEEEecCCCCCcccccc
Confidence            133455555554321                      11       0001 1234556678888766433321       


Q ss_pred             ---------eEEEEECCCceeEEEEee---------cC-ceeEEEEEeeCCCEEEEEEccCCcEEEEEc
Q 038577          287 ---------VFGLYQMPDFVCIHLLSI---------SR-EKITTAVFNELGNWLVFGCAKLGQLLVWEW  336 (860)
Q Consensus       287 ---------~i~~~~~~~~~~~~~~~~---------~~-~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~  336 (860)
                               -|+++++..+........         +. ..=....|+|||+++++.+...|...||-+
T Consensus       312 ~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  312 GGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             ---------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             ccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence                     456677766554322111         11 123578999999999999988787776643

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.64  E-value=5.7e-05  Score=83.69  Aligned_cols=261  Identities=12%  Similarity=0.124  Sum_probs=160.2

Q ss_pred             CCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEE
Q 038577          141 NDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFS  220 (860)
Q Consensus       141 ~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~  220 (860)
                      .+.|.++.|..+...++.+..+|.|.+-|.++.       .......-...|.+++|+||++     .++..+.++++.+
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~-------~~eivg~vd~GI~aaswS~Dee-----~l~liT~~~tll~  135 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETL-------ELEIVGNVDNGISAASWSPDEE-----LLALITGRQTLLF  135 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEccccc-------ceeeeeeccCceEEEeecCCCc-----EEEEEeCCcEEEE
Confidence            367999999999999999999999999987766       3334445678899999999999     8998888888776


Q ss_pred             eeecCCCCCCccccCCCCCCCCCCCcceeeeEEe-----------------eeeccccC---CCCceEEEEecCCCCEEE
Q 038577          221 WGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGL-----------------LRKDDFSQ---APSKVTACDYHRGLDMVV  280 (860)
Q Consensus       221 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~---~~~~v~~~~~~~~~~~l~  280 (860)
                      -.-.-.... ......+........   -.-|..                 .......+   ..+.=+.++|--||++++
T Consensus       136 mT~~f~~i~-E~~L~~d~~~~sk~v---~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fA  211 (1265)
T KOG1920|consen  136 MTKDFEPIA-EKPLDADDERKSKFV---NVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFA  211 (1265)
T ss_pred             Eeccccchh-ccccccccccccccc---eecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEE
Confidence            543211000 000000000000000   001111                 00000001   223345699999999999


Q ss_pred             EE-----EcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEcc--CCcEEEEEccC---ceEEEEecCccc
Q 038577          281 VG-----FSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK--LGQLLVWEWRS---ESYILKQQGHYF  350 (860)
Q Consensus       281 ~~-----~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~--~g~i~v~d~~~---~~~~~~~~~~~~  350 (860)
                      +.     .....|++||.+ +..-..-....+.-.+++|-|.|..+++....  ++.|.++.-..   +.....++....
T Consensus       212 Vs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~  290 (1265)
T KOG1920|consen  212 VSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEK  290 (1265)
T ss_pred             EEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCccccc
Confidence            83     333789999986 44433333344556789999999999887643  46788887443   333333344445


Q ss_pred             CeEEEEEcCCCCEEEE---EeCCCcEEEEECCCCe--eEEEeecCCCceEEEEEeeCC-CEEEEEeCCCcEEEEEc
Q 038577          351 DVNCLAYSPDSQLLAT---GADDNKVKVWTVSSGF--CFVTFTEHTNAVTALHFMANN-HSLLSASLDGTVRAWDL  420 (860)
Q Consensus       351 ~v~~~~~s~~~~~l~~---~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~  420 (860)
                      ++..++|+.++..|++   ......|++|-+.+..  ..+.+.......  +.|+|.. ..+..-..+|...++++
T Consensus       291 ~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  291 EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             chheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence            5899999999999988   4445559999987542  222332222222  7787743 33444446676666664

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.62  E-value=1e-05  Score=85.88  Aligned_cols=207  Identities=12%  Similarity=0.083  Sum_probs=142.2

Q ss_pred             EecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCce-eEEEEEeeCCCEEEEEEccCC----cEEEEEccCc------
Q 038577          271 DYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREK-ITTAVFNELGNWLVFGCAKLG----QLLVWEWRSE------  339 (860)
Q Consensus       271 ~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~~~~g----~i~v~d~~~~------  339 (860)
                      ++++.+..++.|+.+|.|.+++- ..+.++.++..... +..+....+...|++.+.+.+    .+++|+++.-      
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            46788899999999999998886 45555667776666 444444444467777766655    7999998642      


Q ss_pred             eEE--EEec-----CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC----CCeeEEEeecCCCceEEEEEeeCCCEEEE
Q 038577          340 SYI--LKQQ-----GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVS----SGFCFVTFTEHTNAVTALHFMANNHSLLS  408 (860)
Q Consensus       340 ~~~--~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~v~~i~~~~~~~~l~s  408 (860)
                      .+.  ....     ....++.+++.+.+-+.+|+|-.+|.|..+.-+    .+...........+|+++++..++..++-
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence            122  1121     235678999999999999999999999998532    22222233345679999999988877444


Q ss_pred             EeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec-CcccCe
Q 038577          409 ASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS-GHEGPV  480 (860)
Q Consensus       409 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~-~h~~~v  480 (860)
                      +..-..|.+|.+....+.......++....|..+++....+++++..  .+++|+....++...+. ||....
T Consensus       189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e--~l~fY~sd~~~~cfaf~~g~kk~~  259 (933)
T KOG2114|consen  189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE--FLYFYDSDGRGPCFAFEVGEKKEM  259 (933)
T ss_pred             EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc--eEEEEcCCCcceeeeecCCCeEEE
Confidence            44455799999974443344345566678888888877745555544  69999988766666665 665443

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.60  E-value=1.1e-06  Score=93.32  Aligned_cols=183  Identities=14%  Similarity=0.183  Sum_probs=137.1

Q ss_pred             CCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeE
Q 038577          402 NNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVH  481 (860)
Q Consensus       402 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~  481 (860)
                      ++..++.|+....+..+|+++.+..+........ +.  ..-.+++++.+|...| +|.+-|.++.+.++++..|.+.|.
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~-v~--imR~Nnr~lf~G~t~G-~V~LrD~~s~~~iht~~aHs~siS  221 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG-VT--IMRYNNRNLFCGDTRG-TVFLRDPNSFETIHTFDAHSGSIS  221 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCc-eE--EEEecCcEEEeecccc-eEEeecCCcCceeeeeecccccee
Confidence            3457888888888999999998887776665543 33  3345678999999888 999999999999999999999998


Q ss_pred             EEEEcCCCCEEEEEeC---------CCcEEEEEccCCcceeEEcccCCCeEEEEEeeC-CCEEEEEeCCCeEEEEeCCCC
Q 038577          482 GLVFSPTNATLASSSW---------DKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPD-GRQLACSTLDGQIHFWDPLNG  551 (860)
Q Consensus       482 ~l~~s~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~  551 (860)
                      ++..  .|+.|++++.         |..|+|||++.-+.+..+.-+-+ ..-+.|.|. ...+++++..|...+-|..+-
T Consensus       222 DfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~l  298 (1118)
T KOG1275|consen  222 DFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATL  298 (1118)
T ss_pred             eeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC-chhhhhcccccceEEEEecccceeecccccc
Confidence            8776  6889999885         56789999988764433332322 355677774 347888889999999984321


Q ss_pred             -ce-eEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEE
Q 038577          552 -EL-MYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYD  609 (860)
Q Consensus       552 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd  609 (860)
                       .+ ......+.                  .+..+.++++|++|+.|+.|..+|.|.+|.
T Consensus       299 sNP~~~~~~v~p------------------~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  299 SNPPAGVKMVNP------------------NGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             CCCccceeEEcc------------------CCCcceeEEecCCCceEEEecccCcEeeec
Confidence             12 11111111                  123489999999999999999999999997

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.56  E-value=2e-07  Score=60.48  Aligned_cols=39  Identities=33%  Similarity=0.710  Sum_probs=36.8

Q ss_pred             CceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038577          467 GRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN  505 (860)
Q Consensus       467 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  505 (860)
                      ++++..+.+|.++|++++|+|++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.56  E-value=0.0025  Score=69.63  Aligned_cols=529  Identities=11%  Similarity=0.041  Sum_probs=254.8

Q ss_pred             eEEEEcCCCCEEEEEcCCCcEEEEEcc-cCeEEEE-------eecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcc
Q 038577           56 CRIAVSPDGTFLLTVDENQRCHFINLH-CHVVLHR-------VRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKE  127 (860)
Q Consensus        56 ~~va~spdg~~la~~~~d~~i~vwd~~-~~~~~~~-------~~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~  127 (860)
                      ..-...++|.....+..+|.+...-+. +++.+..       +....-..|+..-++|-+++...-|.=++-.+.+....
T Consensus       261 ~~~~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng~lFvGS~~gdSqLi~L~~e~d~  340 (1096)
T KOG1897|consen  261 CYGRVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNGVLFVGSRFGDSQLIKLNTEPDV  340 (1096)
T ss_pred             EcccccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCceEEEeccCCceeeEEccccCCC
Confidence            344567788888888999988765444 4433322       22334466788888886655553333344444433221


Q ss_pred             cceeEEEEEeeccCCCeEEEEEcCC----CCeEEEee---cCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccC
Q 038577          128 VFAFELIRTLADCNDKVTALNWSPD----SNYLLVGS---KDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVD  200 (860)
Q Consensus       128 ~~~~~~~~~~~~h~~~v~~l~~s~d----~~~l~s~~---~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~  200 (860)
                      ........++. .-++|..++.-..    +..+++++   .||++|+..-.-+   +.......+.| -..++.+.-..+
T Consensus       341 gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~---I~e~A~i~l~G-ikg~w~lk~~v~  415 (1096)
T KOG1897|consen  341 GSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIG---IDELASIDLPG-IKGMWSLKSMVD  415 (1096)
T ss_pred             Cchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccc---cceeeEeecCC-ccceeEeecccc
Confidence            11111112222 2346777666432    24566654   5889999865443   11122334444 344555552222


Q ss_pred             CCCCccceEEEEcCCccEEEeeecCCCCCCc-cccCCCCC-------CCCC---CCcceeeeEEee-eeccccCCCCceE
Q 038577          201 KKTDKVNRIYTIARDCYMFSWGFSGNDGKID-ETMEDSEP-------PSPG---TPERRVKKWGLL-RKDDFSQAPSKVT  268 (860)
Q Consensus       201 ~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~-~~~~~~~~-------~~~~---~~~~~~~~~~~~-~~~~~~~~~~~v~  268 (860)
                      ...+.  +++.+-. +.-++..+........ .....+..       ..+.   .....++...-. ....+ ..+..++
T Consensus       416 ~~~d~--ylvlsf~-~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~~~~~~W-~~p~~~t  491 (1096)
T KOG1897|consen  416 ENYDN--YLVLSFI-SETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSAGLRSEW-RPPGKIT  491 (1096)
T ss_pred             ccCCc--EEEEEec-cceEEEEEccceEEeccccccccCceEEEEccCCceEEEEecccEEEEcchhhhhcc-cCCCceE
Confidence            21111  3332221 2223333322110000 00000000       0000   000011111111 01111 1233455


Q ss_pred             EEEecCCCCEEEEEEcCCeEEEEECCCceeEEE-EeecCceeEEEEEeeCC--C----EEEEEEccCCcEEEEEccCceE
Q 038577          269 ACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHL-LSISREKITTAVFNELG--N----WLVFGCAKLGQLLVWEWRSESY  341 (860)
Q Consensus       269 ~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~--~----~l~~~~~~~g~i~v~d~~~~~~  341 (860)
                      ....+.+...+++++.++.+...++..+..... -..-...+.|+.++|-|  +    .++++..++-.+.+.-..+...
T Consensus       492 i~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~  571 (1096)
T KOG1897|consen  492 IGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLIL  571 (1096)
T ss_pred             EEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcce
Confidence            555555666777777778777777766552221 12234578899998753  2    4555555533444444444433


Q ss_pred             EEEe-c---CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC--CCeeEEEe--ecCCCceEEEEEeeCCCEEEEEeCCC
Q 038577          342 ILKQ-Q---GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVS--SGFCFVTF--TEHTNAVTALHFMANNHSLLSASLDG  413 (860)
Q Consensus       342 ~~~~-~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~--~~~~~~v~~i~~~~~~~~l~s~~~dg  413 (860)
                      +... .   .-...|.-.++-.|..+|.++..||.+.-|.+.  ++..-..-  .-...|+.--.|+..++.-+.+..|.
T Consensus       572 ~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdr  651 (1096)
T KOG1897|consen  572 ITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDR  651 (1096)
T ss_pred             eeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCC
Confidence            3322 1   122334455566678899999999998776554  44322211  12345666666766665555555666


Q ss_pred             cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCc--eEEEecCcccCeEEEEEcCCCCE
Q 038577          414 TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGR--LLDILSGHEGPVHGLVFSPTNAT  491 (860)
Q Consensus       414 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~--~~~~~~~h~~~v~~l~~s~~~~~  491 (860)
                      -..+|..+..-....+..+....+..+.-+.-...++.+..+  .+.+.-+..-+  .++++.- ......+++.+....
T Consensus       652 P~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~--~l~i~tid~iqkl~irtvpl-~~~prrI~~q~~sl~  728 (1096)
T KOG1897|consen  652 PTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGG--ALTIGTIDEIQKLHIRTVPL-GESPRRICYQESSLT  728 (1096)
T ss_pred             CEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCC--ceEEEEecchhhcceeeecC-CCChhheEecccceE
Confidence            666666543333333332222222222222333445554444  46655544322  2233332 334566777664444


Q ss_pred             EEEEeC-----------C---CcEEEEEccCCcceeEEc-c---cCCCeEEEEEeeC-CCEEEEEeC----------CCe
Q 038577          492 LASSSW-----------D---KTVRLWNVFEGKGSVESF-P---HTHDVLTVVYRPD-GRQLACSTL----------DGQ  542 (860)
Q Consensus       492 l~s~~~-----------d---g~i~iwd~~~~~~~~~~~-~---~~~~v~~~~~s~~-~~~l~~~~~----------dg~  542 (860)
                      +++.+.           .   ..++++|-.+-+...... .   ....+.++.|..| +.++++|+.          .|.
T Consensus       729 ~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GR  808 (1096)
T KOG1897|consen  729 FGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGR  808 (1096)
T ss_pred             EEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccce
Confidence            444332           1   135666655544222111 1   1223555568877 678888752          578


Q ss_pred             EEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEE
Q 038577          543 IHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLR  617 (860)
Q Consensus       543 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~  617 (860)
                      |.+|....++.+.....+.-                  .+.+.+++. -+|++||.-  ...|++|+..+++.++
T Consensus       809 Iivfe~~e~~~L~~v~e~~v------------------~Gav~aL~~-fngkllA~I--n~~vrLye~t~~~eLr  862 (1096)
T KOG1897|consen  809 IIVFEFEELNSLELVAETVV------------------KGAVYALVE-FNGKLLAGI--NQSVRLYEWTTERELR  862 (1096)
T ss_pred             EEEEEEecCCceeeeeeeee------------------ccceeehhh-hCCeEEEec--CcEEEEEEccccceeh
Confidence            88888777444444333221                  012344332 267777654  4579999999885553

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.56  E-value=3.2e-06  Score=76.35  Aligned_cols=154  Identities=14%  Similarity=0.215  Sum_probs=97.2

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE-EeecCCCceEEEEEeeCCCEEEEEe-----CCCcEEEEEccccceee
Q 038577          354 CLAYSPDSQLLATGADDNKVKVWTVSSGFCFV-TFTEHTNAVTALHFMANNHSLLSAS-----LDGTVRAWDLFRYRNFR  427 (860)
Q Consensus       354 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~s~~-----~dg~i~~wd~~~~~~~~  427 (860)
                      +-+.+-.++.++++..||.+.+++.+.-..+. .+..-...-.+.++...+..+.+++     .-+..+.|+++..+...
T Consensus        94 ~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~  173 (319)
T KOG4714|consen   94 NDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLI  173 (319)
T ss_pred             cccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccc
Confidence            33344456789999999999999876421111 1111111122333344444444432     12345566654433322


Q ss_pred             EeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCce-EEEecCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 038577          428 TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRL-LDILSGHEGPVHGLVFSP-TNATLASSSWDKTVRLWN  505 (860)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~-~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd  505 (860)
                      .-.... ..+.+++.+|....+++++.+++.+-+||.+.... ...+..|+.+++.+-|+| ++..|.++++||.+..||
T Consensus       174 ~~~~~~-~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd  252 (319)
T KOG4714|consen  174 PSKKAL-DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD  252 (319)
T ss_pred             cccccc-ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence            222222 23788888887766665555555999999998754 345678999999999999 567899999999999999


Q ss_pred             ccC
Q 038577          506 VFE  508 (860)
Q Consensus       506 ~~~  508 (860)
                      ..+
T Consensus       253 as~  255 (319)
T KOG4714|consen  253 AST  255 (319)
T ss_pred             CCC
Confidence            764

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.56  E-value=3.7e-07  Score=59.23  Aligned_cols=38  Identities=32%  Similarity=0.692  Sum_probs=36.1

Q ss_pred             EEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEe
Q 038577          132 ELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFY  169 (860)
Q Consensus       132 ~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd  169 (860)
                      +++..+.+|.+.|++++|+|++++|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            36789999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.55  E-value=4.1e-08  Score=103.11  Aligned_cols=277  Identities=16%  Similarity=0.228  Sum_probs=190.6

Q ss_pred             ccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCC-cEEEEEc
Q 038577          258 DDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLG-QLLVWEW  336 (860)
Q Consensus       258 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g-~i~v~d~  336 (860)
                      ..+..+....+|++|+.+.++|++|+..|.|.+|++.+|........|...++.+.-+.||..+++.+.... ...+|++
T Consensus      1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred             hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence            345567788999999999999999999999999999999999999999999999999999999888776533 5678987


Q ss_pred             cC-ceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeec----CCCceEEEEEeeCCCEEEEEeC
Q 038577          337 RS-ESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTE----HTNAVTALHFMANNHSLLSASL  411 (860)
Q Consensus       337 ~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~i~~~~~~~~l~s~~~  411 (860)
                      .+ +.....    ...-.++.|+.....-+.|.......+||++++..+.++-.    ..-.-....|+|+...++   .
T Consensus      1175 ~s~~~~~Hs----f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---n 1247 (1516)
T KOG1832|consen 1175 SSTGGPRHS----FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---N 1247 (1516)
T ss_pred             ccccCcccc----ccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---e
Confidence            65 222222    23356788887655556666666899999999887766321    122236778999887666   3


Q ss_pred             CCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCE
Q 038577          412 DGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNAT  491 (860)
Q Consensus       412 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~  491 (860)
                      ||  .+||++..+.++.|..-.  ....-.|+|.|..+++.      -.|||+++.++++....-  .-..+.|...|..
T Consensus      1248 dG--vLWDvR~~~aIh~FD~ft--~~~~G~FHP~g~eVIIN------SEIwD~RTF~lLh~VP~L--dqc~VtFNstG~V 1315 (1516)
T KOG1832|consen 1248 DG--VLWDVRIPEAIHRFDQFT--DYGGGGFHPSGNEVIIN------SEIWDMRTFKLLHSVPSL--DQCAVTFNSTGDV 1315 (1516)
T ss_pred             Cc--eeeeeccHHHHhhhhhhe--ecccccccCCCceEEee------chhhhhHHHHHHhcCccc--cceEEEeccCccc
Confidence            44  479998887776665433  22344688999888764      358999999888766532  2356777777765


Q ss_pred             EEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccc
Q 038577          492 LASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTD  571 (860)
Q Consensus       492 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  571 (860)
                      +...-     .+=|..+.       .|...+..--|+             ..+-||..+...+.++++.+.         
T Consensus      1316 mYa~~-----~~~d~~sd-------vh~~r~k~p~fS-------------SFRTf~a~dYs~iaTi~v~R~--------- 1361 (1516)
T KOG1832|consen 1316 MYAML-----NIEDVMSD-------VHTRRVKHPLFS-------------SFRTFDAIDYSDIATIPVDRC--------- 1361 (1516)
T ss_pred             hhhhh-----hhhhhhhh-------hcccccccchhh-------------hhccccccccccceeeecccc---------
Confidence            54321     11111111       111111111111             256677777788888887764         


Q ss_pred             cccccccCCCCcEEEEEEecCCCEEEEe
Q 038577          572 RRSAANSSSGKCFTTLCYSADGSYILAG  599 (860)
Q Consensus       572 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~  599 (860)
                                  +..+|-+|...+|.+.
T Consensus      1362 ------------~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1362 ------------LLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred             ------------hhhhhcCCccceEEEE
Confidence                        7788888877777654

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=5.7e-06  Score=79.69  Aligned_cols=257  Identities=11%  Similarity=0.061  Sum_probs=156.9

Q ss_pred             EEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCC-CEEEE
Q 038577          288 FGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDS-QLLAT  366 (860)
Q Consensus       288 i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~  366 (860)
                      +++.+..+.+..+.+..+...|..++|+|..+-|+...+-+..|.|.|+++...+..+..+ ..+++++|.-|. ++|..
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence            6666666777777777778889999999999976666666699999999999998888777 679999998765 56778


Q ss_pred             EeCCCcEEEEECCCCee-EEEeec--CCCceEEEEEe------eCCCEEEEEeCCCcEEEEEccc--cceeeEeeCCCCC
Q 038577          367 GADDNKVKVWTVSSGFC-FVTFTE--HTNAVTALHFM------ANNHSLLSASLDGTVRAWDLFR--YRNFRTFTTPSSR  435 (860)
Q Consensus       367 ~~~dg~i~iwd~~~~~~-~~~~~~--~~~~v~~i~~~------~~~~~l~s~~~dg~i~~wd~~~--~~~~~~~~~~~~~  435 (860)
                      |..+|.|.+||++..+- +..+.+  ...+|..++.-      +.+..++....+  +..|++.-  ...........+.
T Consensus       254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG  331 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPG  331 (463)
T ss_pred             eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCc
Confidence            88899999999985432 222221  23344444432      233344444432  45666532  2222333444445


Q ss_pred             cEEEEEECCCCCEEEEEecCCC------eE-EEEECCCCceEEEe-cCccc-C------eEEEEEcCCCCEEE-EEeCCC
Q 038577          436 QFVSLASDQSGEVICAGTLDSF------EI-FVWSMKTGRLLDIL-SGHEG-P------VHGLVFSPTNATLA-SSSWDK  499 (860)
Q Consensus       436 ~~~~~~~~~~~~~l~~~~~~~~------~i-~v~d~~~~~~~~~~-~~h~~-~------v~~l~~s~~~~~l~-s~~~dg  499 (860)
                      .+.++...+..+.+++....+.      .+ ---|-.+|.++..- .++.+ .      -..+.-.++.++++ +++..+
T Consensus       332 ~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn  411 (463)
T KOG1645|consen  332 ICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTN  411 (463)
T ss_pred             ceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcc
Confidence            5667777776666666544310      01 11122233333211 11211 0      01122234556655 455568


Q ss_pred             cEEEEEccCCcceeEEcccCCCeEEEEEee-C-CCEEEEEeCCCeEEEEeCC
Q 038577          500 TVRLWNVFEGKGSVESFPHTHDVLTVVYRP-D-GRQLACSTLDGQIHFWDPL  549 (860)
Q Consensus       500 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~-~~~l~~~~~dg~i~iwd~~  549 (860)
                      .+.+||..+.+ +....+...+|.+++... + +.+|++-+ |..++||..+
T Consensus       412 ~lil~D~~s~e-vvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e  461 (463)
T KOG1645|consen  412 ELILQDPHSFE-VVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE  461 (463)
T ss_pred             eeEEeccchhh-eeeecccCcceeecceeecCCcchhhhee-cceEEEEecC
Confidence            89999999987 555555668888877654 3 34666655 5578888654

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.52  E-value=6.1e-06  Score=87.90  Aligned_cols=180  Identities=17%  Similarity=0.209  Sum_probs=131.4

Q ss_pred             CCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEE
Q 038577          318 GNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTAL  397 (860)
Q Consensus       318 ~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i  397 (860)
                      +..++.++-. ..+..+|+.+.+......-..+.|.-+..  +++.+.+|...|+|.+-|.++.+.+.++..|.+.|.++
T Consensus       147 ~~~~i~Gg~Q-~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf  223 (1118)
T KOG1275|consen  147 PSTLIMGGLQ-EKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF  223 (1118)
T ss_pred             Ccceeecchh-hheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence            3444444444 56777888887777665544444555554  67899999999999999999999999999999999887


Q ss_pred             EEeeCCCEEEEEeC---------CCcEEEEEccccceeeEeeCCCCCcEEEEEECCCC-CEEEEEecCCCeEEEEECCC-
Q 038577          398 HFMANNHSLLSASL---------DGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSG-EVICAGTLDSFEIFVWSMKT-  466 (860)
Q Consensus       398 ~~~~~~~~l~s~~~---------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~i~v~d~~~-  466 (860)
                      ..  .|+.|+++|.         |..|++||++..+.+..+..+....  -+.|.|.- ..+++.+..| ...+.|..+ 
T Consensus       224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~--flrf~Psl~t~~~V~S~sG-q~q~vd~~~l  298 (1118)
T KOG1275|consen  224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQ--FLRFHPSLTTRLAVTSQSG-QFQFVDTATL  298 (1118)
T ss_pred             ec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCch--hhhhcccccceEEEEeccc-ceeecccccc
Confidence            76  5778998885         5568999999988877776665443  34444542 3455555555 788888432 


Q ss_pred             --C-ceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038577          467 --G-RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN  505 (860)
Q Consensus       467 --~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  505 (860)
                        . .-+..+......+..+.+|++++.+|.+..+|.|.+|.
T Consensus       299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             CCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence              2 11233333445599999999999999999999999998

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=8.4e-06  Score=78.55  Aligned_cols=265  Identities=14%  Similarity=0.100  Sum_probs=152.4

Q ss_pred             EEEEECCCCcEEeeccCCccCeeEEEEcCCCC-EEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEE-E
Q 038577           34 VSVTDLIKSKTVTLPVESSSNICRIAVSPDGT-FLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAV-G  111 (860)
Q Consensus        34 i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~-~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~-~  111 (860)
                      +.+.+..+-+...++.+|...|..++|||..+ ++..++.++.|.|.|+++...+..+....++.+++|.-|...... |
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG  254 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG  254 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence            66666666555556678999999999999888 778889999999999999999998887799999999987755544 4


Q ss_pred             -eCCeEEEEeCCCCCcccceeEEEEEeec--cCCCeEEEE------EcCCCCeEEEeecCCeEEEEeecccccCcccccc
Q 038577          112 -TGKLVQIWRSPGFKKEVFAFELIRTLAD--CNDKVTALN------WSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKP  182 (860)
Q Consensus       112 -~~~~i~iwd~~~~~~~~~~~~~~~~~~~--h~~~v~~l~------~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~  182 (860)
                       ..|.|.|||+...+...      ..+.+  -..+|..++      .++.|.+|+....+  ...|++......    .+
T Consensus       255 l~nG~VlvyD~R~~~~~~------~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~----~p  322 (463)
T KOG1645|consen  255 LQNGMVLVYDMRQPEGPL------MELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAEC----LP  322 (463)
T ss_pred             ccCceEEEEEccCCCchH------hhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccC----CC
Confidence             77999999998765422      11111  122333333      33445555555543  667877655222    22


Q ss_pred             e-EeecCCCcEEEEEEccCCCCCccceEEEEcCCcc---EEEe--eecCCCCCCccccCCCCCCCCCCCcceeeeEEeee
Q 038577          183 F-LLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCY---MFSW--GFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLR  256 (860)
Q Consensus       183 ~-~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~---i~~w--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (860)
                      . ...+..+...++.+.+..+.    .|++.-.+..   ++.-  ..+...                    ....|....
T Consensus       323 ~vlele~pG~cismqy~~~snh----~l~tyRs~pn~p~~r~il~~~d~~d--------------------G~pVc~~r~  378 (463)
T KOG1645|consen  323 CVLELEPPGICISMQYHGVSNH----LLLTYRSNPNFPQSRFILGRIDFRD--------------------GFPVCGKRR  378 (463)
T ss_pred             cccccCCCcceeeeeecCccce----EEEEecCCCCCccceeeeeeecccc--------------------Cceeeeecc
Confidence            2 22233555566666654441    3333322210   0000  000000                    001121111


Q ss_pred             eccccCCC---CceEEEEecCCCCEEE-EEEcCCeEEEEECCCceeEEEEeecCceeEEEEEee-CCCEEEEEEccCCcE
Q 038577          257 KDDFSQAP---SKVTACDYHRGLDMVV-VGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNE-LGNWLVFGCAKLGQL  331 (860)
Q Consensus       257 ~~~~~~~~---~~v~~~~~~~~~~~l~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~g~i  331 (860)
                      .. +....   ..-..+.-.++.++++ +|...+.+.+||..+++..+.+... .++..++... +|..++..-.+ ..+
T Consensus       379 ~~-~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd-~~v  455 (463)
T KOG1645|consen  379 TY-FGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLTD-DRV  455 (463)
T ss_pred             cc-cCCcccccccccceeccccccEEEEecCCcceeEEeccchhheeeecccC-cceeecceeecCCcchhhheec-ceE
Confidence            11 00000   0011122234445544 5556689999999999999988877 5777776654 33333333333 567


Q ss_pred             EEEEcc
Q 038577          332 LVWEWR  337 (860)
Q Consensus       332 ~v~d~~  337 (860)
                      .||..+
T Consensus       456 ~Iyk~e  461 (463)
T KOG1645|consen  456 HIYKNE  461 (463)
T ss_pred             EEEecC
Confidence            776544

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.49  E-value=4.6e-05  Score=79.41  Aligned_cols=136  Identities=17%  Similarity=0.193  Sum_probs=94.6

Q ss_pred             CCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEee-cCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceE-
Q 038577          264 PSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSI-SREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESY-  341 (860)
Q Consensus       264 ~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~-  341 (860)
                      ...+.--+++..+++++.|+..|.+++|+-..+.....-.. ..+.+.....+++...+++++.. |.|.++-+..+.. 
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~-g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTAS-GRVSVFQLNKELPR  111 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCC-ceEEeehhhccCCC
Confidence            34455556677889999999999999999876665443332 33445556666666666666554 9999987765321 


Q ss_pred             ----EEEe-cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eeEEEeecCCCceEEEEEe
Q 038577          342 ----ILKQ-QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSG----FCFVTFTEHTNAVTALHFM  400 (860)
Q Consensus       342 ----~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~  400 (860)
                          +... ..|...|+|++|++++..+.+|...|+|..-.+.+.    ...+.+..-.+.|..+.+.
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~  179 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL  179 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence                1111 347788999999999999999999999999888762    1222333445667777665

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.49  E-value=1.1e-05  Score=85.17  Aligned_cols=267  Identities=13%  Similarity=0.091  Sum_probs=155.3

Q ss_pred             CceEEEEecCCCCEEEEEEcC----CeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce
Q 038577          265 SKVTACDYHRGLDMVVVGFSN----GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES  340 (860)
Q Consensus       265 ~~v~~~~~~~~~~~l~~~~~~----g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~  340 (860)
                      ..-+-..|+|...++++++..    |.|.||-- +|++...... .-.+++++|+|..-.|+.+-.. |.+.+|...+.+
T Consensus        16 avsti~SWHPsePlfAVA~fS~er~GSVtIfad-tGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~-g~~~v~~~~~~e   92 (1416)
T KOG3617|consen   16 AVSTISSWHPSEPLFAVASFSPERGGSVTIFAD-TGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEM-GVSDVQKTNTTE   92 (1416)
T ss_pred             ccccccccCCCCceeEEEEecCCCCceEEEEec-CCCCCccccc-ceehhhhccChHHHHHhhcccc-ceeEEEecCCce
Confidence            344556789999999887754    88888854 4443322211 1245779999987777766555 999999998888


Q ss_pred             EEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE--eecC--CCceE--EEEEeeCCC------EEEE
Q 038577          341 YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVT--FTEH--TNAVT--ALHFMANNH------SLLS  408 (860)
Q Consensus       341 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~--~~~v~--~i~~~~~~~------~l~s  408 (860)
                      .......|..+|..+.||++|..++++..-|.+.+|....-..++.  +..|  ...++  +...++++.      ..++
T Consensus        93 ~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaV  172 (1416)
T KOG3617|consen   93 THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAV  172 (1416)
T ss_pred             eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhc
Confidence            7777788999999999999999999999999999998763222221  1122  12233  334455532      2234


Q ss_pred             EeCCCcEE-EEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcC
Q 038577          409 ASLDGTVR-AWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSP  487 (860)
Q Consensus       409 ~~~dg~i~-~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~  487 (860)
                      .+.+..+- .++.+.....+.         ..-.-.|+|..+++++.+| +|+-.|- .|+.....+..+.  ..+-|.+
T Consensus       173 tgDe~alD~~fnwk~~~a~rs---------~~ksgv~~g~~F~~~~~~G-tVyyvdq-~g~~~~V~k~dS~--vQmLf~~  239 (1416)
T KOG3617|consen  173 TGDESALDEPFNWKESLAERS---------DEKSGVPKGTEFLFAGKSG-TVYYVDQ-NGRQRTVHKLDSE--VQMLFMG  239 (1416)
T ss_pred             cCchhhhcccccCccchhhcc---------ccccCCCCCcEEEEEcCCc-eEEEEcC-CCcEEEEEEccch--HHHHHhc
Confidence            44444332 222211111111         1112247788888888887 8887774 3444433321111  1122222


Q ss_pred             CCCEEEEEeCCCcEEEEEcc-C---------------Cc------------ce----eEEcccCCCeEEEEEeeCCCEEE
Q 038577          488 TNATLASSSWDKTVRLWNVF-E---------------GK------------GS----VESFPHTHDVLTVVYRPDGRQLA  535 (860)
Q Consensus       488 ~~~~l~s~~~dg~i~iwd~~-~---------------~~------------~~----~~~~~~~~~v~~~~~s~~~~~l~  535 (860)
                      -..-++..-.+-++.++-+. +               |.            .+    .--......+++++++.-+..|+
T Consensus       240 ~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~  319 (1416)
T KOG3617|consen  240 YCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLW  319 (1416)
T ss_pred             ccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEE
Confidence            21112211111111111110 0               00            00    00112456799999999999999


Q ss_pred             EEeCCCeEEEEe
Q 038577          536 CSTLDGQIHFWD  547 (860)
Q Consensus       536 ~~~~dg~i~iwd  547 (860)
                      .|...|.+.+|-
T Consensus       320 agt~~gnv~~w~  331 (1416)
T KOG3617|consen  320 AGTKEGNVTIWL  331 (1416)
T ss_pred             ecccCCcEEEee
Confidence            999999999995

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.48  E-value=0.00073  Score=67.37  Aligned_cols=272  Identities=13%  Similarity=0.068  Sum_probs=139.2

Q ss_pred             EecCCCCEEEEEEc---CCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecC
Q 038577          271 DYHRGLDMVVVGFS---NGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQG  347 (860)
Q Consensus       271 ~~~~~~~~l~~~~~---~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~  347 (860)
                      +|.++|+.|+.++.   ..++.+.|+.+++..+.............++++++.++..... ..|...|+++.+....+..
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~-~~l~~vdL~T~e~~~vy~~  120 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNG-RSLRRVDLDTLEERVVYEV  120 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETT-TEEEEEETTT--EEEEEE-
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECC-CeEEEEECCcCcEEEEEEC
Confidence            57889988776655   4678888998888877666554445567788998888876544 6889999999876555544


Q ss_pred             cccCeEEEEE--cCCCCEEEEEeC----------------------CCcEEEEECCCCeeEEEeecCCCceEEEEEeeCC
Q 038577          348 HYFDVNCLAY--SPDSQLLATGAD----------------------DNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANN  403 (860)
Q Consensus       348 ~~~~v~~~~~--s~~~~~l~~~~~----------------------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~  403 (860)
                      ...-+-...|  +.++..++-.-.                      ...|.-.|+.+|+....+. ....+..+.|+|..
T Consensus       121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~d  199 (386)
T PF14583_consen  121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTD  199 (386)
T ss_dssp             -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTE
T ss_pred             CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCC
Confidence            4444443444  445665543211                      1235555777776555443 45667788899976


Q ss_pred             CEEEEEeCCC-----cEEEEEccc-cceeeEeeC-CCCCcEEEEEECCCCCEEEEEec-CCC---eEEEEECCCCceEEE
Q 038577          404 HSLLSASLDG-----TVRAWDLFR-YRNFRTFTT-PSSRQFVSLASDQSGEVICAGTL-DSF---EIFVWSMKTGRLLDI  472 (860)
Q Consensus       404 ~~l~s~~~dg-----~i~~wd~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~-~~~---~i~v~d~~~~~~~~~  472 (860)
                      ..+++-+..|     .-++|-+++ +...+.+.. .....+..=-|.|||..+..-+. .++   .|.-+|+.+++....
T Consensus       200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~  279 (386)
T PF14583_consen  200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL  279 (386)
T ss_dssp             EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE
T ss_pred             CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE
Confidence            6666554433     136676654 222232222 22334455668999998776433 222   577778888766443


Q ss_pred             ecCcccCeEEEEEcCCCCEEEEEeCCC----------------cEEEEEccCCcceeEEcccC---------C--CeEEE
Q 038577          473 LSGHEGPVHGLVFSPTNATLASSSWDK----------------TVRLWNVFEGKGSVESFPHT---------H--DVLTV  525 (860)
Q Consensus       473 ~~~h~~~v~~l~~s~~~~~l~s~~~dg----------------~i~iwd~~~~~~~~~~~~~~---------~--~v~~~  525 (860)
                      ..  ..+-..+..++||++++-=+.|.                -|+++++..+... .+..|.         .  .-...
T Consensus       280 ~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~-~l~~h~~sw~v~~~~~q~~hPhp  356 (386)
T PF14583_consen  280 ME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR-KLARHDTSWKVLDGDRQVTHPHP  356 (386)
T ss_dssp             EE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE-EEEE-------BTTBSSTT----
T ss_pred             Ee--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee-eeeeccCcceeecCCCccCCCCC
Confidence            22  23455677788999887544432                4566777665422 121121         1  23567


Q ss_pred             EEeeCCCEEEE-EeCCCeEEEEe
Q 038577          526 VYRPDGRQLAC-STLDGQIHFWD  547 (860)
Q Consensus       526 ~~s~~~~~l~~-~~~dg~i~iwd  547 (860)
                      .|+|||++++- +...|...||-
T Consensus       357 ~FSPDgk~VlF~Sd~~G~~~vY~  379 (386)
T PF14583_consen  357 SFSPDGKWVLFRSDMEGPPAVYL  379 (386)
T ss_dssp             EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred             ccCCCCCEEEEECCCCCCccEEE
Confidence            99999997655 45567666653

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.45  E-value=7.8e-07  Score=83.58  Aligned_cols=146  Identities=10%  Similarity=0.151  Sum_probs=114.4

Q ss_pred             CCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccC-----eEEEEeecCCce
Q 038577           22 QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCH-----VVLHRVRFKYPV   96 (860)
Q Consensus        22 dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~-----~~~~~~~~~~~v   96 (860)
                      -|-++++|.+..|-+-|++||.++.+.  ..+.|.++.|...+.++..|..+|.|..+|+..+     .+.+.+-|+..|
T Consensus       224 ~gyhfs~G~sqqv~L~nvetg~~qsf~--sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssv  301 (425)
T KOG2695|consen  224 MGYHFSVGLSQQVLLTNVETGHQQSFQ--SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSV  301 (425)
T ss_pred             ceeeecccccceeEEEEeecccccccc--cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcch
Confidence            444555566678999999999988776  7788999999999999999999999999999854     667777899999


Q ss_pred             eEEEECC-CCCE-EEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEE--EcCCCCeEEEeecCCeEEEEeecc
Q 038577           97 NAILFSP-NGKY-IAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALN--WSPDSNYLLVGSKDLAVRLFYVKE  172 (860)
Q Consensus        97 ~~~~fsp-dg~~-la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~s~d~~~l~s~~~dg~v~vwd~~~  172 (860)
                      +++..-. ++++ +|+.-+|.|.+||..--+...    -+..+.||...-.-+-  ..+....+++++.|...|||.++.
T Consensus       302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~----~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~  377 (425)
T KOG2695|consen  302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKK----SVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS  377 (425)
T ss_pred             hhhhhhccccceEeeccCcCceeEeeehhhhccc----ceeeeecccccccccccccccccceEEEccCeeEEEEEeccc
Confidence            9988765 4554 455589999999987554211    2678888855433332  345667889999999999999998


Q ss_pred             c
Q 038577          173 K  173 (860)
Q Consensus       173 ~  173 (860)
                      +
T Consensus       378 g  378 (425)
T KOG2695|consen  378 G  378 (425)
T ss_pred             C
Confidence            7

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.44  E-value=0.00092  Score=69.07  Aligned_cols=75  Identities=17%  Similarity=0.303  Sum_probs=64.0

Q ss_pred             CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcccc
Q 038577          347 GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRY  423 (860)
Q Consensus       347 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~  423 (860)
                      .....+.|++++|+...++.|+.||.|.+||...+...  +....-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            46678999999999999999999999999998766433  3345567889999999999999999999999998543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.42  E-value=0.0011  Score=69.14  Aligned_cols=271  Identities=14%  Similarity=0.113  Sum_probs=179.6

Q ss_pred             EEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEE-EE
Q 038577          288 FGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLL-AT  366 (860)
Q Consensus       288 i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~  366 (860)
                      +.+++..+......+.... ....+...+++..+.+.......+...+...................++.++.+..+ ++
T Consensus        13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~   91 (381)
T COG3391          13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVT   91 (381)
T ss_pred             eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEe
Confidence            3444443333333333332 556777888886666665443445555544222222111111334577888888844 44


Q ss_pred             EeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeC---CCcEEEEEccccceeeEeeCCCCCcEEEEEEC
Q 038577          367 GADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASL---DGTVRAWDLFRYRNFRTFTTPSSRQFVSLASD  443 (860)
Q Consensus       367 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  443 (860)
                      ...++.|.+.|..+........... ....++++++++.+..+..   ++.+.+.|-.+.+.......... + ..++++
T Consensus        92 ~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~-P-~~~a~~  168 (381)
T COG3391          92 TGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNT-P-TGVAVD  168 (381)
T ss_pred             cCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCC-c-ceEEEC
Confidence            4456899999988777766654333 6778999999987776665   68899999888888887554432 2 899999


Q ss_pred             CCCCEEEEEecCCCeEEEEECCCCceEE-E---ecCcccCeEEEEEcCCCCEEEEEeCC---CcEEEEEccCCcceeEEc
Q 038577          444 QSGEVICAGTLDSFEIFVWSMKTGRLLD-I---LSGHEGPVHGLVFSPTNATLASSSWD---KTVRLWNVFEGKGSVESF  516 (860)
Q Consensus       444 ~~~~~l~~~~~~~~~i~v~d~~~~~~~~-~---~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~  516 (860)
                      |+|..+++...+.+.+.++|.+...... .   ...-......+.++|+|..+......   +.+...|..++.......
T Consensus       169 p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~  248 (381)
T COG3391         169 PDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL  248 (381)
T ss_pred             CCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc
Confidence            9999888888666699999977665553 1   11122344678999999976655443   589999988876444322


Q ss_pred             ccCC-CeEEEEEeeCCCEEEEEeCC-CeEEEEeCCCCceeEEEecccc
Q 038577          517 PHTH-DVLTVVYRPDGRQLACSTLD-GQIHFWDPLNGELMYTIEGRRD  562 (860)
Q Consensus       517 ~~~~-~v~~~~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~  562 (860)
                      .... ....+..+|+|..+.+.... +.+.+-|..+.+....+.....
T Consensus       249 ~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~  296 (381)
T COG3391         249 PVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNE  296 (381)
T ss_pred             ccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccccc
Confidence            2222 56788999999999888544 8899999998888777665543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.42  E-value=0.00069  Score=73.60  Aligned_cols=280  Identities=14%  Similarity=0.173  Sum_probs=167.7

Q ss_pred             CCEEEEEEccCCcEEEEEccCceEEEEecCcc-cCeE----------EEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 038577          318 GNWLVFGCAKLGQLLVWEWRSESYILKQQGHY-FDVN----------CLAYSPDSQLLATGADDNKVKVWTVSSGFCFVT  386 (860)
Q Consensus       318 ~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~-~~v~----------~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  386 (860)
                      +..+++++.. +.|.-.|..+++.+.+..... ..+.          .+++  .+..++.++.|+.+.-+|..+|+.+-.
T Consensus        69 ~g~vyv~s~~-g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~  145 (527)
T TIGR03075        69 DGVMYVTTSY-SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWS  145 (527)
T ss_pred             CCEEEEECCC-CcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence            3444444443 788888999998887764311 1111          1122  234677788899999999999998876


Q ss_pred             eecC--C--CceEEEEEeeCCCEEEEEe------CCCcEEEEEccccceeeEeeCCCCC---------------------
Q 038577          387 FTEH--T--NAVTALHFMANNHSLLSAS------LDGTVRAWDLFRYRNFRTFTTPSSR---------------------  435 (860)
Q Consensus       387 ~~~~--~--~~v~~i~~~~~~~~l~s~~------~dg~i~~wd~~~~~~~~~~~~~~~~---------------------  435 (860)
                      ....  .  ..+.+.-..-++ .++.+.      .+|.|..+|..+++.+..+......                     
T Consensus       146 ~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~  224 (527)
T TIGR03075       146 KKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP  224 (527)
T ss_pred             cccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence            5421  1  112111111134 444443      2689999999999877665432111                     


Q ss_pred             ----------cEEEEEECCCCCEEEEEecC-----C----------CeEEEEECCCCceEEEecCcccCeEE--------
Q 038577          436 ----------QFVSLASDQSGEVICAGTLD-----S----------FEIFVWSMKTGRLLDILSGHEGPVHG--------  482 (860)
Q Consensus       436 ----------~~~~~~~~~~~~~l~~~~~~-----~----------~~i~v~d~~~~~~~~~~~~h~~~v~~--------  482 (860)
                                .-..+++++...+++++..+     +          ..|.-.|+++|+..-.++.....+.+        
T Consensus       225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~  304 (527)
T TIGR03075       225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI  304 (527)
T ss_pred             CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence                      11245788888888877643     1          16778899999988776542222211        


Q ss_pred             -EEEcCCCC---EEEEEeCCCcEEEEEccCCcceeE--------Ec---c-cC-CCe-----------------------
Q 038577          483 -LVFSPTNA---TLASSSWDKTVRLWNVFEGKGSVE--------SF---P-HT-HDV-----------------------  522 (860)
Q Consensus       483 -l~~s~~~~---~l~s~~~dg~i~iwd~~~~~~~~~--------~~---~-~~-~~v-----------------------  522 (860)
                       +.+..+|+   .++.+..+|.+++.|-.+++.+..        ..   . .. .++                       
T Consensus       305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~  384 (527)
T TIGR03075       305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFL  384 (527)
T ss_pred             EEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCc
Confidence             22224665   688999999999999999875421        00   0 00 000                       


Q ss_pred             -----EEEEEeeCCCEEEEEeCC---------------------------------CeEEEEeCCCCceeEEEecccccC
Q 038577          523 -----LTVVYRPDGRQLACSTLD---------------------------------GQIHFWDPLNGELMYTIEGRRDIS  564 (860)
Q Consensus       523 -----~~~~~s~~~~~l~~~~~d---------------------------------g~i~iwd~~~~~~~~~~~~~~~~~  564 (860)
                           ..++++|+..++++...+                                 |.|.-+|+.+|+.+...+..... 
T Consensus       385 Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~-  463 (527)
T TIGR03075       385 GGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPL-  463 (527)
T ss_pred             CCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCC-
Confidence                 125667766666555443                                 34555666666655554432110 


Q ss_pred             CCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeec
Q 038577          565 GGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQIT  622 (860)
Q Consensus       565 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~  622 (860)
                                         ..+. ..-.|..++.++.+|.++.+|.++|+.+-+++..
T Consensus       464 -------------------~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       464 -------------------WGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             -------------------CCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence                               0111 1224557777888999999999999999888764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.41  E-value=0.0016  Score=70.72  Aligned_cols=281  Identities=12%  Similarity=0.154  Sum_probs=165.7

Q ss_pred             CCEEEEEEcCCeEEEEECCCceeEEEEeecCc-eeEE----------EEEeeCCCEEEEEEccCCcEEEEEccCceEEEE
Q 038577          276 LDMVVVGFSNGVFGLYQMPDFVCIHLLSISRE-KITT----------AVFNELGNWLVFGCAKLGQLLVWEWRSESYILK  344 (860)
Q Consensus       276 ~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~-~i~~----------~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~  344 (860)
                      +..+++++.++.|.-+|..+++.+-....... .+..          +++  .+..+++++.+ +.+.-.|.++++.+..
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~d-g~l~ALDa~TGk~~W~  145 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLD-ARLVALDAKTGKVVWS  145 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCC-CEEEEEECCCCCEEee
Confidence            55788888889999999999998877654321 1111          111  23455555444 8999999999999877


Q ss_pred             ecCcccC-eEEEEEcC---CCCEEEEEeC------CCcEEEEECCCCeeEEEeecCC-----------------------
Q 038577          345 QQGHYFD-VNCLAYSP---DSQLLATGAD------DNKVKVWTVSSGFCFVTFTEHT-----------------------  391 (860)
Q Consensus       345 ~~~~~~~-v~~~~~s~---~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~-----------------------  391 (860)
                      ....... -..+.-+|   ++ .++++..      +|.|..+|.++|+.+-.+..-.                       
T Consensus       146 ~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~  224 (527)
T TIGR03075       146 KKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP  224 (527)
T ss_pred             cccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence            6421100 00111112   34 4555432      6889999999998876543211                       


Q ss_pred             --------CceE-EEEEeeCCCEEEEEeCC-----C-----------cEEEEEccccceeeEeeCCCC--------CcEE
Q 038577          392 --------NAVT-ALHFMANNHSLLSASLD-----G-----------TVRAWDLFRYRNFRTFTTPSS--------RQFV  438 (860)
Q Consensus       392 --------~~v~-~i~~~~~~~~l~s~~~d-----g-----------~i~~wd~~~~~~~~~~~~~~~--------~~~~  438 (860)
                              ..++ .+++.+....++.+..+     +           .|...|+++++....++..+.        ....
T Consensus       225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~  304 (527)
T TIGR03075       225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI  304 (527)
T ss_pred             CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence                    1111 23555555555544421     2           577788889988877765322        1222


Q ss_pred             EEEECCCCC---EEEEEecCCCeEEEEECCCCceEEEec--C----------cc-cCe----------------------
Q 038577          439 SLASDQSGE---VICAGTLDSFEIFVWSMKTGRLLDILS--G----------HE-GPV----------------------  480 (860)
Q Consensus       439 ~~~~~~~~~---~l~~~~~~~~~i~v~d~~~~~~~~~~~--~----------h~-~~v----------------------  480 (860)
                      -+.+..+|+   .++.+..++ .+++.|..+|+++...+  .          .. .++                      
T Consensus       305 l~d~~~~G~~~~~v~~~~K~G-~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~  383 (527)
T TIGR03075       305 LFDLKKDGKPRKLLAHADRNG-FFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGF  383 (527)
T ss_pred             EEEeccCCcEEEEEEEeCCCc-eEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCC
Confidence            333445676   666777777 99999999998862110  0          00 000                      


Q ss_pred             ------EEEEEcCCCCEEEEEeCC---------------------------------CcEEEEEccCCcceeEEcccCCC
Q 038577          481 ------HGLVFSPTNATLASSSWD---------------------------------KTVRLWNVFEGKGSVESFPHTHD  521 (860)
Q Consensus       481 ------~~l~~s~~~~~l~s~~~d---------------------------------g~i~iwd~~~~~~~~~~~~~~~~  521 (860)
                            ..++++|+..++.....+                                 |.+.-+|+.+++...........
T Consensus       384 ~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~  463 (527)
T TIGR03075       384 LGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPL  463 (527)
T ss_pred             cCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCC
Confidence                  124566655554433222                                 44677777777654443321111


Q ss_pred             eEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccc
Q 038577          522 VLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRD  562 (860)
Q Consensus       522 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  562 (860)
                      ..+. +.-.+.+++.++.+|.++.+|.++|+.+...+....
T Consensus       464 ~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~  503 (527)
T TIGR03075       464 WGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSG  503 (527)
T ss_pred             CCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCC
Confidence            1111 222556778888899999999999999998876543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=0.0011  Score=69.20  Aligned_cols=268  Identities=13%  Similarity=0.093  Sum_probs=179.6

Q ss_pred             EEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCC-EEEE
Q 038577          331 LLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGAD-DNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNH-SLLS  408 (860)
Q Consensus       331 i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~s  408 (860)
                      +.+++..+......+..+. ....+.+.+++..+..... ...+...+...................+++++.+. ..++
T Consensus        13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~   91 (381)
T COG3391          13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVT   91 (381)
T ss_pred             eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEe
Confidence            4445544444444433222 4566788888865554443 22455555442222221211113456778888887 4455


Q ss_pred             EeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecC--CCeEEEEECCCCceEEEecCcccCeEEEEEc
Q 038577          409 ASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLD--SFEIFVWSMKTGRLLDILSGHEGPVHGLVFS  486 (860)
Q Consensus       409 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s  486 (860)
                      ...++.+.+.|..+.+.........  ....++++++++.+.++...  .+.+.+.|..+++.......-..+ ..++++
T Consensus        92 ~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~  168 (381)
T COG3391          92 TGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVD  168 (381)
T ss_pred             cCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEEC
Confidence            5556899999988877777666554  56789999999999888773  459999999999988886543445 899999


Q ss_pred             CCCCEEEEEe-CCCcEEEEEccCCcceeE----EcccCCCeEEEEEeeCCCEEEEEeCC---CeEEEEeCCCCceeEEEe
Q 038577          487 PTNATLASSS-WDKTVRLWNVFEGKGSVE----SFPHTHDVLTVVYRPDGRQLACSTLD---GQIHFWDPLNGELMYTIE  558 (860)
Q Consensus       487 ~~~~~l~s~~-~dg~i~iwd~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~  558 (860)
                      |+|..+..+. .++.|.+.|.........    ..........+.++|+|.++.+....   +.+...|..++.......
T Consensus       169 p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~  248 (381)
T COG3391         169 PDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL  248 (381)
T ss_pred             CCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc
Confidence            9999766555 788999999766643311    12333445778999999977776554   589999998887766522


Q ss_pred             cccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecC-CCeEEEEECCCceEEEEEee
Q 038577          559 GRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGS-SKYICMYDVADQVLLRRFQI  621 (860)
Q Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~v~vwd~~~~~~~~~~~~  621 (860)
                      ....                  . ....+.++|+|+++.+... .+.+.+-|..+......+..
T Consensus       249 ~~~~------------------~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~  293 (381)
T COG3391         249 PVGS------------------G-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT  293 (381)
T ss_pred             cccc------------------C-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence            1111                  0 1467899999999988854 48899999999888776544

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.39  E-value=0.00098  Score=68.89  Aligned_cols=139  Identities=15%  Similarity=0.061  Sum_probs=95.8

Q ss_pred             cEEEEEcccC--eEEEEeecCCceeEEEECC-CCCEEEEE-----eCC----eEEEEeCCCCCcccceeEEEEEeeccCC
Q 038577           75 RCHFINLHCH--VVLHRVRFKYPVNAILFSP-NGKYIAVG-----TGK----LVQIWRSPGFKKEVFAFELIRTLADCND  142 (860)
Q Consensus        75 ~i~vwd~~~~--~~~~~~~~~~~v~~~~fsp-dg~~la~~-----~~~----~i~iwd~~~~~~~~~~~~~~~~~~~h~~  142 (860)
                      ++.++.+..+  +.+..++.+....++.||- +...+-+.     .++    .-.+|+....+..    ....+--....
T Consensus       185 Nl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klq----rvsvtsipL~s  260 (545)
T PF11768_consen  185 NLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQ----RVSVTSIPLPS  260 (545)
T ss_pred             cEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCcee----EEEEEEEecCC
Confidence            3444444433  3344444566678889987 33444443     233    3456777654321    11122225678


Q ss_pred             CeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEee
Q 038577          143 KVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWG  222 (860)
Q Consensus       143 ~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~  222 (860)
                      .|.+.+++|+...|+.|+.||+|.+||...+        ...+....-.++.++|+|+|.     .+++++..|.+.+||
T Consensus       261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~--------~t~~~ka~~~P~~iaWHp~ga-----i~~V~s~qGelQ~FD  327 (545)
T PF11768_consen  261 QVICCARSPSEDKLVLGCEDGSIILYDTTRG--------VTLLAKAEFIPTLIAWHPDGA-----IFVVGSEQGELQCFD  327 (545)
T ss_pred             cceEEecCcccceEEEEecCCeEEEEEcCCC--------eeeeeeecccceEEEEcCCCc-----EEEEEcCCceEEEEE
Confidence            8999999999999999999999999998776        333444556678899999999     999999999999999


Q ss_pred             ecCCCCCC
Q 038577          223 FSGNDGKI  230 (860)
Q Consensus       223 ~~~~~~~~  230 (860)
                      +.-.....
T Consensus       328 ~ALspi~~  335 (545)
T PF11768_consen  328 MALSPIKM  335 (545)
T ss_pred             eecCccce
Confidence            98765433

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.38  E-value=2.5e-05  Score=81.30  Aligned_cols=162  Identities=20%  Similarity=0.189  Sum_probs=110.6

Q ss_pred             eEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEc---CC-CcEEEEEcccCeEEEEeecCCceeEEEECCCCCEE
Q 038577           33 RVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVD---EN-QRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYI  108 (860)
Q Consensus        33 ~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~---~d-~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~l  108 (860)
                      .+.+-|.. +.....+......+..-+|+|+++.++..+   .. ..+.++|+.+++........+.-...+|||||+.|
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l  252 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKL  252 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEE
Confidence            46666665 444444434556678889999999988753   22 46999999999888887778888889999999999


Q ss_pred             EEE--eC--CeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeec-CCe--EEEEeecccccCccccc
Q 038577          109 AVG--TG--KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSK-DLA--VRLFYVKEKLKGIHTNK  181 (860)
Q Consensus       109 a~~--~~--~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~-dg~--v~vwd~~~~~~~~~~~~  181 (860)
                      |..  .+  -.|+++|+.++..        ..+..-.+.-+.-.|+|||+.++..+. .|.  |.+.+.+..       .
T Consensus       253 ~f~~~rdg~~~iy~~dl~~~~~--------~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~-------~  317 (425)
T COG0823         253 AFSSSRDGSPDIYLMDLDGKNL--------PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS-------Q  317 (425)
T ss_pred             EEEECCCCCccEEEEcCCCCcc--------eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC-------c
Confidence            998  33  4677788877652        334444444457889999998887653 454  444455444       1


Q ss_pred             ceEeecCCCcEEEEEEccCCCCCccceEEEEcCC
Q 038577          182 PFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARD  215 (860)
Q Consensus       182 ~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~d  215 (860)
                      ...+....+.-..-.++|||+     +++..+..
T Consensus       318 ~~riT~~~~~~~~p~~SpdG~-----~i~~~~~~  346 (425)
T COG0823         318 VTRLTFSGGGNSNPVWSPDGD-----KIVFESSS  346 (425)
T ss_pred             eeEeeccCCCCcCccCCCCCC-----EEEEEecc
Confidence            233333322223678899999     78777743

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.33  E-value=8e-05  Score=77.60  Aligned_cols=205  Identities=16%  Similarity=0.113  Sum_probs=128.4

Q ss_pred             eEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCC---cEEEEEccCceEEEEecCcccCeEEEEEcCCCCE
Q 038577          287 VFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLG---QLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQL  363 (860)
Q Consensus       287 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g---~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~  363 (860)
                      .+.+-|.. +...+.+......+..-+|+|++..++...-..+   .+.++++.++....... ..+.-...+|+|||+.
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~  251 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSK  251 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCE
Confidence            33444443 4555566666677888899999998877654433   48899998876554442 2222345689999998


Q ss_pred             EEEEeC-CCc--EEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEe-CCCc--EEEEEccccceeeEeeCCCCCcE
Q 038577          364 LATGAD-DNK--VKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSAS-LDGT--VRAWDLFRYRNFRTFTTPSSRQF  437 (860)
Q Consensus       364 l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~--i~~wd~~~~~~~~~~~~~~~~~~  437 (860)
                      ++.... ||.  |.++|+..+... .+....+.-..-.|+|||+.++-.+ ..|.  |.+++...... +.+...... -
T Consensus       252 l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~-~  328 (425)
T COG0823         252 LAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGG-N  328 (425)
T ss_pred             EEEEECCCCCccEEEEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCC-C
Confidence            876554 554  666677666533 3443334344678999999887554 4454  55556555444 333322222 2


Q ss_pred             EEEEECCCCCEEEEEecCCCe--EEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeC
Q 038577          438 VSLASDQSGEVICAGTLDSFE--IFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSW  497 (860)
Q Consensus       438 ~~~~~~~~~~~l~~~~~~~~~--i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  497 (860)
                      ..-.++|||++++.....++.  |.+.|+.++...+.+. +......-.+.|+++.+...+.
T Consensus       329 ~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         329 SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             cCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence            277889999999988754334  7777777766544443 3334445678888887765543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.33  E-value=0.00067  Score=71.04  Aligned_cols=220  Identities=12%  Similarity=0.181  Sum_probs=121.0

Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeE
Q 038577          349 YFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRT  428 (860)
Q Consensus       349 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~  428 (860)
                      ......+.++|+|++++++ .+|.-.++.....+....     +.-...+|.+.+ .+++-...+.|.++.--+....+.
T Consensus        32 ~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~  104 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKS  104 (443)
T ss_dssp             SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT--
T ss_pred             CcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCccccceE
Confidence            3447889999999999884 568888888544443322     233467788855 567676688899974333333334


Q ss_pred             eeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 038577          429 FTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFE  508 (860)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~  508 (860)
                      +..+.  .+..+..   |..|.+.+.+  .|.+||..+++.++.+...  +|..+.|+++|.+++..+.+ .+.+++...
T Consensus       105 i~~~~--~~~~If~---G~LL~~~~~~--~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~  174 (443)
T PF04053_consen  105 IKLPF--SVEKIFG---GNLLGVKSSD--FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNL  174 (443)
T ss_dssp             ---SS---EEEEE----SSSEEEEETT--EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred             EcCCc--ccceEEc---CcEEEEECCC--CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence            44432  2333333   8888777665  6999999999999998743  48999999999999998855 588877543


Q ss_pred             C----------c-ceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCce--eEEEecccccCCCccccccccc
Q 038577          509 G----------K-GSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGEL--MYTIEGRRDISGGRLMTDRRSA  575 (860)
Q Consensus       509 ~----------~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  575 (860)
                      .          + ...........|.+.+|..|  .++-.+.. .++.+  ..|+.  +..++                 
T Consensus       175 ~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~~~i~~ld-----------------  232 (443)
T PF04053_consen  175 EAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKYL--VNGETGIIAHLD-----------------  232 (443)
T ss_dssp             HHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEEE--ETTEEEEEEE-S-----------------
T ss_pred             hhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEEE--EcCCcceEEEcC-----------------
Confidence            3          0 12222223677888889765  33333333 66663  23332  22221                 


Q ss_pred             cccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCc
Q 038577          576 ANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQ  613 (860)
Q Consensus       576 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~  613 (860)
                            .++.=+.+.|..+.+.....|+.|..+.++..
T Consensus       233 ------~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  233 ------KPLYLLGYLPKENRLYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             ------S--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred             ------CceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence                  13566777777778888888888888777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.31  E-value=0.00043  Score=71.47  Aligned_cols=286  Identities=12%  Similarity=0.012  Sum_probs=140.6

Q ss_pred             CeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCc--cccee
Q 038577           54 NICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKK--EVFAF  131 (860)
Q Consensus        54 ~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~--~~~~~  131 (860)
                      .|+++.|+++..-||++...|.|.||.+...+.-. -+...+-....|.+-+     ..++.-.+-|+.....  ....+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~l~di~~r~~~~~~~gf   76 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG-NREQPPDLDYNFRRFS-----LNNSPGKLTDISDRAPPSLKEGF   76 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S-------GGGSS-SEEE-GGG--TT-SEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC-ccCCCcccCccccccc-----ccCCCcceEEehhhCCccccccc
Confidence            58999999998889999999999999887654332 0001111222222100     0111122233322110  11234


Q ss_pred             EEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceE---eecCCCcEEEEEEcc---CCCCCc
Q 038577          132 ELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFL---LLGHRDSVVGCFFSV---DKKTDK  205 (860)
Q Consensus       132 ~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~---~~~h~~~i~~~~~~~---~~~~~~  205 (860)
                      .+...+....++|++++.| |=.++|.|..+|.+.|.|++.. .-+.......   -......++++.|+.   .+....
T Consensus        77 ~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGP-avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS  154 (395)
T PF08596_consen   77 LPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGP-AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS  154 (395)
T ss_dssp             EEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTT-EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred             CchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCC-eEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence            4556666678999999998 5568999999999999999665 1111000000   111345677787752   222223


Q ss_pred             cceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEE-ecCC---------
Q 038577          206 VNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACD-YHRG---------  275 (860)
Q Consensus       206 ~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~---------  275 (860)
                      ...+++|...|.+.+|.+.....                     ..|..........+.+++..+. ++.+         
T Consensus       155 Si~L~vGTn~G~v~~fkIlp~~~---------------------g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~  213 (395)
T PF08596_consen  155 SICLLVGTNSGNVLTFKILPSSN---------------------GRFSVQFAGATTNHDSPILSIIPINADTGESALATI  213 (395)
T ss_dssp             EEEEEEEETTSEEEEEEEEE-GG---------------------G-EEEEEEEEE--SS----EEEEEETTT--B-B-BH
T ss_pred             ceEEEEEeCCCCEEEEEEecCCC---------------------CceEEEEeeccccCCCceEEEEEEECCCCCcccCch
Confidence            34899999999999998863111                     2344333322233334444443 2111         


Q ss_pred             -----------CCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEe-----eCCCEEEEEEccCCcEEEEEccCc
Q 038577          276 -----------LDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFN-----ELGNWLVFGCAKLGQLLVWEWRSE  339 (860)
Q Consensus       276 -----------~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s-----~~~~~l~~~~~~~g~i~v~d~~~~  339 (860)
                                 -+.+++...+..++++...+.+..+...........+.+-     ..+..|++... +|.+++|.+..-
T Consensus       214 ~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~-~G~i~i~SLP~L  292 (395)
T PF08596_consen  214 SAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN-NGSIRIYSLPSL  292 (395)
T ss_dssp             HHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET-TSEEEEEETTT-
T ss_pred             hHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC-CCcEEEEECCCc
Confidence                       1345666778889999998887776555222334445553     24455555554 599999999998


Q ss_pred             eEEEEecCcc----cCeEEEEEcCCCCEEEEEeC
Q 038577          340 SYILKQQGHY----FDVNCLAYSPDSQLLATGAD  369 (860)
Q Consensus       340 ~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~~  369 (860)
                      +.+....-+.    ..+....++++|..++..+.
T Consensus       293 kei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp  326 (395)
T PF08596_consen  293 KEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP  326 (395)
T ss_dssp             -EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS
T ss_pred             hHhhcccCCCccccccccccEECCCCCEEEEeCc
Confidence            8777664422    22445566777776655544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.31  E-value=2e-05  Score=83.18  Aligned_cols=146  Identities=12%  Similarity=0.173  Sum_probs=108.1

Q ss_pred             CCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEE
Q 038577          446 GEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTV  525 (860)
Q Consensus       446 ~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  525 (860)
                      +++++.|+.+| .+++++.+.. + .+...|...      ..+|.++++|+.||+|.|-.+.+.+ .........++.++
T Consensus        49 ~~~~~~GtH~g-~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~-~~~~~df~rpiksi  118 (846)
T KOG2066|consen   49 DKFFALGTHRG-AVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDD-EITQYDFKRPIKSI  118 (846)
T ss_pred             cceeeeccccc-eEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCc-cceeEecCCcceeE
Confidence            67899999998 9999987633 3 333335433      5579999999999999999998876 34445567889999


Q ss_pred             EEeeC-----CCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEec
Q 038577          526 VYRPD-----GRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGG  600 (860)
Q Consensus       526 ~~s~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~  600 (860)
                      +++|+     .+.+++|+..| +.++.-+-.........+.                  ..++|.+++|  .|.++|-++
T Consensus       119 al~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~------------------~eG~I~~i~W--~g~lIAWan  177 (846)
T KOG2066|consen  119 ALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE------------------GEGPIHSIKW--RGNLIAWAN  177 (846)
T ss_pred             EeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec------------------CccceEEEEe--cCcEEEEec
Confidence            99997     56889999888 7777643222222222222                  1357999999  688999888


Q ss_pred             CCCeEEEEECCCceEEEEEeecc
Q 038577          601 SSKYICMYDVADQVLLRRFQITH  623 (860)
Q Consensus       601 ~dg~v~vwd~~~~~~~~~~~~~~  623 (860)
                      ++| |+|||+.+++.+..++.+.
T Consensus       178 d~G-v~vyd~~~~~~l~~i~~p~  199 (846)
T KOG2066|consen  178 DDG-VKVYDTPTRQRLTNIPPPS  199 (846)
T ss_pred             CCC-cEEEeccccceeeccCCCC
Confidence            888 9999999999887766544

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.29  E-value=0.0016  Score=69.85  Aligned_cols=244  Identities=15%  Similarity=0.165  Sum_probs=139.9

Q ss_pred             eEEEEEcCCCCEEEEEe-CCC----cEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCC-----------cE
Q 038577          352 VNCLAYSPDSQLLATGA-DDN----KVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDG-----------TV  415 (860)
Q Consensus       352 v~~~~~s~~~~~l~~~~-~dg----~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg-----------~i  415 (860)
                      +....++|+|+++|.+- ..|    .++++|+.+++.+...... .....+.|.++++.++....+.           .|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            44678999999988653 333    5999999999776533211 1223499999988776555333           37


Q ss_pred             EEEEcccccee--eEeeCCCCCc-EEEEEECCCCCEEEEEecCC---CeEEEEECCCC----ceEEEecCcccCe-EEEE
Q 038577          416 RAWDLFRYRNF--RTFTTPSSRQ-FVSLASDQSGEVICAGTLDS---FEIFVWSMKTG----RLLDILSGHEGPV-HGLV  484 (860)
Q Consensus       416 ~~wd~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~---~~i~v~d~~~~----~~~~~~~~h~~~v-~~l~  484 (860)
                      +.|.+.+....  ..+..+.... ...+..+++++++++....+   ..+++.++..+    .....+..+...+ ..+.
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~  284 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD  284 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence            77887766443  4444444444 77899999999988755433   26888898875    2233333333333 3343


Q ss_pred             EcCCCCEEEEEeC---CCcEEEEEccCCcc---eeEEcccCCCeEEEEEeeCCCEEE-EEeCCCe--EEEEeCCCCceeE
Q 038577          485 FSPTNATLASSSW---DKTVRLWNVFEGKG---SVESFPHTHDVLTVVYRPDGRQLA-CSTLDGQ--IHFWDPLNGELMY  555 (860)
Q Consensus       485 ~s~~~~~l~s~~~---dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~--i~iwd~~~~~~~~  555 (860)
                      .. .+.+++....   .+.|...++.....   ...+..+...+.-..+...+.+|+ ....++.  |+++++..+....
T Consensus       285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~  363 (414)
T PF02897_consen  285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESR  363 (414)
T ss_dssp             EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEE
T ss_pred             cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEe
Confidence            43 4444444432   35677777776653   224555666444444445455554 4444543  8999998455544


Q ss_pred             EEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEE--ecC--CCeEEEEECCCceEE
Q 038577          556 TIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILA--GGS--SKYICMYDVADQVLL  616 (860)
Q Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~--~~~--dg~v~vwd~~~~~~~  616 (860)
                      .+.....                   +.|..+...+++..+..  .+-  -+++..||+.+++.-
T Consensus       364 ~~~~p~~-------------------g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~  409 (414)
T PF02897_consen  364 EIPLPEA-------------------GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT  409 (414)
T ss_dssp             EEESSSS-------------------SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred             eecCCcc-------------------eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence            4443321                   23556665666654432  222  368999999998754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.28  E-value=0.00044  Score=71.38  Aligned_cols=290  Identities=14%  Similarity=0.153  Sum_probs=142.0

Q ss_pred             ceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccC-------
Q 038577          266 KVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRS-------  338 (860)
Q Consensus       266 ~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~-------  338 (860)
                      .|+.+.++++..-|++|...|.|.+|.....+...  ......-....+.+-+       .+++.-.+-|+..       
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~~-------~~~~~~~l~di~~r~~~~~~   73 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRFS-------LNNSPGKLTDISDRAPPSLK   73 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S---------GGGSS-SEEE-GGG--TT-S
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccccc-------ccCCCcceEEehhhCCcccc
Confidence            58899999999999999999999999874332221  0000001111111100       0001222223321       


Q ss_pred             -c-eEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEee--c------CCCceEEEEEee-----CC
Q 038577          339 -E-SYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFT--E------HTNAVTALHFMA-----NN  403 (860)
Q Consensus       339 -~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~------~~~~v~~i~~~~-----~~  403 (860)
                       + .....+....++|++++.|.- .++|.|..+|.+.|.|++....+..-.  .      ....|+++.|.-     |+
T Consensus        74 ~gf~P~~l~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~  152 (395)
T PF08596_consen   74 EGFLPLTLLDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG  152 (395)
T ss_dssp             EEEEEEEEE---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred             cccCchhheeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence             1 122333455789999999844 499999999999999998877766521  2      234678888862     22


Q ss_pred             ---CEEEEEeCCCcEEEEEccc-cceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec----C
Q 038577          404 ---HSLLSASLDGTVRAWDLFR-YRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS----G  475 (860)
Q Consensus       404 ---~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~----~  475 (860)
                         -.+++|...|.+.+|.+.- .......      .........++..+        .|..+|..+|+......    +
T Consensus       153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v------~~~~~~~~~~~~i~--------~I~~i~~~~G~~a~At~~~~~~  218 (395)
T PF08596_consen  153 YSSICLLVGTNSGNVLTFKILPSSNGRFSV------QFAGATTNHDSPIL--------SIIPINADTGESALATISAMQG  218 (395)
T ss_dssp             SEEEEEEEEETTSEEEEEEEEE-GGG-EEE------EEEEEE--SS------------EEEEEETTT--B-B-BHHHHHG
T ss_pred             ccceEEEEEeCCCCEEEEEEecCCCCceEE------EEeeccccCCCceE--------EEEEEECCCCCcccCchhHhhc
Confidence               3577888888888887631 1100000      00001111112221        34444555554322111    1


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEe-----eCCCEEEEEeCCCeEEEEeCCC
Q 038577          476 HEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-----PDGRQLACSTLDGQIHFWDPLN  550 (860)
Q Consensus       476 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~dg~i~iwd~~~  550 (860)
                      -...+   ..   ..+++.+ .+..++++...+.+...+..........+.+-     ..+..|++-..+|.+++|.+..
T Consensus       219 l~~g~---~i---~g~vVvv-Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~  291 (395)
T PF08596_consen  219 LSKGI---SI---PGYVVVV-SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS  291 (395)
T ss_dssp             GGGT----------EEEEEE--SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT
T ss_pred             cccCC---Cc---CcEEEEE-cccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC
Confidence            01100   00   1134444 46779999998887666655433344455553     3567888889999999999999


Q ss_pred             CceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCC
Q 038577          551 GELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSS  602 (860)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d  602 (860)
                      -+.+..........                ...+...+++++|+.++-.+..
T Consensus       292 Lkei~~~~l~~~~d----------------~~~~~~ssis~~Gdi~~~~gps  327 (395)
T PF08596_consen  292 LKEIKSVSLPPPLD----------------SRRLSSSSISRNGDIFYWTGPS  327 (395)
T ss_dssp             --EEEEEE-SS-------------------HHHHTT-EE-TTS-EEEE-SSS
T ss_pred             chHhhcccCCCccc----------------cccccccEECCCCCEEEEeCcc
Confidence            99888877643211                0124556778889877666543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.25  E-value=0.0027  Score=66.71  Aligned_cols=262  Identities=11%  Similarity=0.109  Sum_probs=143.4

Q ss_pred             EEEecCCCCEEEEEEcC----------C-eEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc
Q 038577          269 ACDYHRGLDMVVVGFSN----------G-VFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR  337 (860)
Q Consensus       269 ~~~~~~~~~~l~~~~~~----------g-~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~  337 (860)
                      .++.+|.|..+|+...+          . .|.+|+. .|+.+..+.-..+.+..+.|+.+.+.+++ ..+ |.+++||+.
T Consensus        33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV-~~d-G~v~vy~~~  109 (410)
T PF04841_consen   33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVV-QSD-GTVRVYDLF  109 (410)
T ss_pred             eEEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEE-EcC-CEEEEEeCC
Confidence            34556666666665444          2 5899998 67777777777789999999986555544 444 999999987


Q ss_pred             CceEEEEe-------cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eEEEe---ec-----CCC-ceEE-EEE
Q 038577          338 SESYILKQ-------QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGF-CFVTF---TE-----HTN-AVTA-LHF  399 (860)
Q Consensus       338 ~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~---~~-----~~~-~v~~-i~~  399 (860)
                      ... ...+       .-....+....+..+|-.++  ..++.+.+.+-.... ....+   ..     +.. .... ..+
T Consensus       110 G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l  186 (410)
T PF04841_consen  110 GEF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL  186 (410)
T ss_pred             Cce-eechhhhccccCcccccccccccCCCCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEe
Confidence            444 1111       11111122223343553333  334555444322211 11111   11     000 1111 223


Q ss_pred             eeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCc-cc
Q 038577          400 MANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGH-EG  478 (860)
Q Consensus       400 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h-~~  478 (860)
                      +.+....+....++.+.+.+-...+.     .....++..+++||+|+++|.-..++ .+.+.+..-.+....+... ..
T Consensus       187 ~~~~~~~i~~~~g~~i~~i~~~~~~~-----i~~~~~i~~iavSpng~~iAl~t~~g-~l~v~ssDf~~~~~e~~~~~~~  260 (410)
T PF04841_consen  187 SSDRVVEILLANGETIYIIDENSFKQ-----IDSDGPIIKIAVSPNGKFIALFTDSG-NLWVVSSDFSEKLCEFDTDSKS  260 (410)
T ss_pred             ecCcceEEEEecCCEEEEEEcccccc-----ccCCCCeEEEEECCCCCEEEEEECCC-CEEEEECcccceeEEeecCcCC
Confidence            44444445555555555443322111     22335799999999999999998887 8888887666666555533 34


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEe
Q 038577          479 PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIE  558 (860)
Q Consensus       479 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  558 (860)
                      ...++.|.-++..++.-  ...+.+...           ...   .+.|.-++..++..-.|| ++|+.-...+.++.++
T Consensus       261 ~p~~~~WCG~dav~l~~--~~~l~lvg~-----------~~~---~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp  323 (410)
T PF04841_consen  261 PPKQMAWCGNDAVVLSW--EDELLLVGP-----------DGD---SISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVP  323 (410)
T ss_pred             CCcEEEEECCCcEEEEe--CCEEEEECC-----------CCC---ceEEeccCceEEeccCCc-eEEEeCCceEEEEECC
Confidence            56677776543332222  223333331           111   134444555556666677 8898777666666654


Q ss_pred             c
Q 038577          559 G  559 (860)
Q Consensus       559 ~  559 (860)
                      .
T Consensus       324 ~  324 (410)
T PF04841_consen  324 D  324 (410)
T ss_pred             H
Confidence            4

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.24  E-value=9.6e-05  Score=80.54  Aligned_cols=186  Identities=18%  Similarity=0.177  Sum_probs=113.3

Q ss_pred             cCCcEEEe-CCCEEEeee-------C--CeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCC----------
Q 038577           14 RGGNAVLS-QNTKLISPV-------G--NRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDEN----------   73 (860)
Q Consensus        14 ~~~~~~~s-dg~~l~~~~-------~--~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d----------   73 (860)
                      ..++.++| ||+.+++..       +  ..|.+++. .+....+..+.  ..+...|||||+.|++....          
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccC
Confidence            44578899 999999876       3  25777776 33334444343  48999999999988877532          


Q ss_pred             --CcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEeCCeEEE---EeCCCCCcccceeEEEEEee-ccCCCeEEE
Q 038577           74 --QRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQI---WRSPGFKKEVFAFELIRTLA-DCNDKVTAL  147 (860)
Q Consensus        74 --~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~~~~i~i---wd~~~~~~~~~~~~~~~~~~-~h~~~v~~l  147 (860)
                        +.+.+.++..+....  ...+.|..++|||||+.||...++.|++   -....+.....   ....+. +-...+..+
T Consensus       428 ~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~---~~~~l~~~l~~~~~~l  502 (591)
T PRK13616        428 ATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALT---NPREVGPGLGDTAVSL  502 (591)
T ss_pred             CCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeec---ccEEeecccCCccccc
Confidence              233333444443322  3467899999999999999998888887   44444432111   112222 233346889


Q ss_pred             EEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeec--CCCcEEEEEEccCCCCCccceEEEEcCCccEEE
Q 038577          148 NWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLG--HRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFS  220 (860)
Q Consensus       148 ~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~--h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~  220 (860)
                      .|.+++.+ +++..++...+|.+.-...     ....+.+  ...++..++-+++       .++....++.+.+
T Consensus       503 ~W~~~~~L-~V~~~~~~~~v~~v~vDG~-----~~~~~~~~n~~~~v~~vaa~~~-------~iyv~~~~g~~~l  564 (591)
T PRK13616        503 DWRTGDSL-VVGRSDPEHPVWYVNLDGS-----NSDALPSRNLSAPVVAVAASPS-------TVYVTDARAVLQL  564 (591)
T ss_pred             eEecCCEE-EEEecCCCCceEEEecCCc-----cccccCCCCccCceEEEecCCc-------eEEEEcCCceEEe
Confidence            99999885 4555556566676554311     1111222  2566767766652       5666666664443

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.24  E-value=0.00015  Score=75.82  Aligned_cols=115  Identities=18%  Similarity=0.242  Sum_probs=89.0

Q ss_pred             ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEec-CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE-
Q 038577          307 EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQ-GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCF-  384 (860)
Q Consensus       307 ~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-  384 (860)
                      ..+.--+++..+++++.+++. |.+++|+-..+....... +..+.+.....+++..++|.|+..|.|.++-++.+... 
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~-G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~  112 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSA-GSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD  112 (726)
T ss_pred             ceEEEEEeecCCceEEEeccc-ceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence            355566777888999999887 999999987776544332 34455666778999989999999999999987653211 


Q ss_pred             ----EEe-ecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccc
Q 038577          385 ----VTF-TEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFR  422 (860)
Q Consensus       385 ----~~~-~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~  422 (860)
                          ... ..|...|++++|++++..+++|...|+|..-.+..
T Consensus       113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence                111 23788999999999999999999999999888766

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.20  E-value=0.002  Score=61.49  Aligned_cols=208  Identities=15%  Similarity=0.232  Sum_probs=118.6

Q ss_pred             EeecCCCceEEEEEeeCCCEE-EEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEEC
Q 038577          386 TFTEHTNAVTALHFMANNHSL-LSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSM  464 (860)
Q Consensus       386 ~~~~~~~~v~~i~~~~~~~~l-~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~  464 (860)
                      .+.+-...+.+++|.|+.+.| ++....+.|..++. +++.++.+........-.+++..++.++++.-.++ .+.++++
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~-~L~~~~~   93 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQ-RLYIFTI   93 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTT-EEEEEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCC-cEEEEEE
Confidence            444556679999999986655 55556677877776 57888888887777889999988887776654555 8999988


Q ss_pred             CCC--ce----EEEec-----CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccC---CcceeEE--------cccCCCe
Q 038577          465 KTG--RL----LDILS-----GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFE---GKGSVES--------FPHTHDV  522 (860)
Q Consensus       465 ~~~--~~----~~~~~-----~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~--------~~~~~~v  522 (860)
                      ...  ..    ...+.     .+...+-.++|.|.++.|+.+-...-..+|.+..   .......        ......+
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  173 (248)
T PF06977_consen   94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL  173 (248)
T ss_dssp             ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred             eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence            432  11    11121     2445689999999888888887777777777764   2111111        1244568


Q ss_pred             EEEEEeeCC-CEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecC
Q 038577          523 LTVVYRPDG-RQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGS  601 (860)
Q Consensus       523 ~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~  601 (860)
                      .+++++|.. ++++....+..|..+| .+|+.+..+.-.....+-           ...-...-.++|.++|++.+++ +
T Consensus       174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl-----------~~~~~QpEGIa~d~~G~LYIvs-E  240 (248)
T PF06977_consen  174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGL-----------SKDIPQPEGIAFDPDGNLYIVS-E  240 (248)
T ss_dssp             -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG------------SS---SEEEEEE-TT--EEEEE-T
T ss_pred             cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCc-----------ccccCCccEEEECCCCCEEEEc-C
Confidence            899999964 5666677778899999 678877766544321100           0001136899999999765554 5


Q ss_pred             CCeEEEE
Q 038577          602 SKYICMY  608 (860)
Q Consensus       602 dg~v~vw  608 (860)
                      -+..++|
T Consensus       241 pNlfy~f  247 (248)
T PF06977_consen  241 PNLFYRF  247 (248)
T ss_dssp             TTEEEEE
T ss_pred             CceEEEe
Confidence            5555444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.18  E-value=0.00014  Score=77.09  Aligned_cols=188  Identities=14%  Similarity=0.173  Sum_probs=133.1

Q ss_pred             CCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceE
Q 038577          391 TNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLL  470 (860)
Q Consensus       391 ~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~  470 (860)
                      ...+.+++++  ++.++.|..+|.+++++....- ...+. ...       .+.+|.++++++.|| .+.|..+-+.+..
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~-~s~-------~~~~Gey~asCS~DG-kv~I~sl~~~~~~  106 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFD-HSS-------SILEGEYVASCSDDG-KVVIGSLFTDDEI  106 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCcc-ccccc-ccc-------cccCCceEEEecCCC-cEEEeeccCCccc
Confidence            3455666664  5589999999999999875432 11111 111       167899999999999 9999999988887


Q ss_pred             EEecCcccCeEEEEEcCC-----CCEEEEEeCCCcEEEEEcc--CCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeE
Q 038577          471 DILSGHEGPVHGLVFSPT-----NATLASSSWDKTVRLWNVF--EGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQI  543 (860)
Q Consensus       471 ~~~~~h~~~v~~l~~s~~-----~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  543 (860)
                      .++. -..++.+++++|+     .+.+++|+..| +.++.-.  ..+.........++|.++.|  .|+++|-++++| |
T Consensus       107 ~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v  181 (846)
T KOG2066|consen  107 TQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-V  181 (846)
T ss_pred             eeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCC-c
Confidence            7766 4678999999998     56799999888 7776532  12222344567889999999  578999998888 9


Q ss_pred             EEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECC
Q 038577          544 HFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVA  611 (860)
Q Consensus       544 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~  611 (860)
                      +|||+.+++.+..++........              ......+.|.++.+.++ | ..-+|+|..+.
T Consensus       182 ~vyd~~~~~~l~~i~~p~~~~R~--------------e~fpphl~W~~~~~LVI-G-W~d~v~i~~I~  233 (846)
T KOG2066|consen  182 KVYDTPTRQRLTNIPPPSQSVRP--------------ELFPPHLHWQDEDRLVI-G-WGDSVKICSIK  233 (846)
T ss_pred             EEEeccccceeeccCCCCCCCCc--------------ccCCCceEecCCCeEEE-e-cCCeEEEEEEe
Confidence            99999999998887665421110              01246788887765544 3 33447777776

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.18  E-value=0.0014  Score=68.76  Aligned_cols=223  Identities=11%  Similarity=0.083  Sum_probs=122.5

Q ss_pred             cCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE
Q 038577          305 SREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCF  384 (860)
Q Consensus       305 ~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  384 (860)
                      ....+..+.++|+|+.+++.+.  |.-.++.....+....     +.-..++|.+.+ .+|+-...+.|.++.--.....
T Consensus        31 ~~~~p~~ls~npngr~v~V~g~--geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~  102 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVCGD--GEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVV  102 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEEET--TEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT
T ss_pred             CCcCCeeEEECCCCCEEEEEcC--CEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCccccc
Confidence            3445789999999999999443  8888887544443322     234467898855 5777777889999742222221


Q ss_pred             EEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEEC
Q 038577          385 VTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSM  464 (860)
Q Consensus       385 ~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~  464 (860)
                      ..+.. ...+..+..   |..|...+.+ .|.+||..+++.++.+..+   .+..+.|+++|.+++..+.+.  +++++.
T Consensus       103 k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~g~~val~t~~~--i~il~~  172 (443)
T PF04053_consen  103 KSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS---AVKYVIWSDDGELVALVTKDS--IYILKY  172 (443)
T ss_dssp             ------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S-S--EEEEEE
T ss_pred             eEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC---CCcEEEEECCCCEEEEEeCCe--EEEEEe
Confidence            22221 123444433   7666666554 8999999999999998865   378999999999999999885  666654


Q ss_pred             CCC-----------ceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCE
Q 038577          465 KTG-----------RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQ  533 (860)
Q Consensus       465 ~~~-----------~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  533 (860)
                      ...           .....+..-...|.+.+|..+  .++-.+.. .++.  +..|+ ...+.....++.-+.+.|+.+.
T Consensus       173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge-~~~i~~ld~~~yllgy~~~~~~  246 (443)
T PF04053_consen  173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGE-TGIIAHLDKPLYLLGYLPKENR  246 (443)
T ss_dssp             -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTE-EEEEEE-SS--EEEEEETTTTE
T ss_pred             cchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCC-cceEEEcCCceEEEEEEccCCE
Confidence            322           123333322567888888655  44444434 5665  44444 3333334566777778887778


Q ss_pred             EEEEeCCCeEEEEeCCCC
Q 038577          534 LACSTLDGQIHFWDPLNG  551 (860)
Q Consensus       534 l~~~~~dg~i~iwd~~~~  551 (860)
                      +.....|+.+..+.++..
T Consensus       247 ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  247 LYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             EEEE-TT--EEEEE--HH
T ss_pred             EEEEECCCCEEEEEECHH
Confidence            888888888888877543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.17  E-value=0.0034  Score=62.94  Aligned_cols=228  Identities=18%  Similarity=0.263  Sum_probs=134.8

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEe---------
Q 038577          359 PDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTF---------  429 (860)
Q Consensus       359 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~---------  429 (860)
                      ..++.|+.|+.+| +.+++........... +...|..+...++-+.+++-+ |+.+.++++.........         
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            4578899999888 9999983332222222 334499999999877777665 499999998765444311         


Q ss_pred             ----eCCCCCcEEEEE---ECCCCCEEEEEecCCCeEEEEECCCC-----ceEEEecCcccCeEEEEEcCCCCEEEEEeC
Q 038577          430 ----TTPSSRQFVSLA---SDQSGEVICAGTLDSFEIFVWSMKTG-----RLLDILSGHEGPVHGLVFSPTNATLASSSW  497 (860)
Q Consensus       430 ----~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~i~v~d~~~~-----~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  497 (860)
                          ..+....+..++   ....+..++++...  .|.+|.....     +..+.+. -...+.+++|.  ++.++.+..
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk--~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~  156 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK--KILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS  156 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEECC--EEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC
Confidence                122223344444   23344455555555  6777776542     4555555 35788899998  566777765


Q ss_pred             CCcEEEEEccCCcceeEEcc-c------------CCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccC
Q 038577          498 DKTVRLWNVFEGKGSVESFP-H------------THDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDIS  564 (860)
Q Consensus       498 dg~i~iwd~~~~~~~~~~~~-~------------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  564 (860)
                      ++ ..+.|+.++.. ..+.. .            ..++..+.. +++.+|++-  |..-.+.|. .|++.+  ...-.+ 
T Consensus       157 ~~-f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r--~~~i~W-  227 (275)
T PF00780_consen  157 KG-FYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSR--KSTIQW-  227 (275)
T ss_pred             Cc-eEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCc--ccEEEc-
Confidence            44 88889987653 22221 1            122333333 345566543  332333333 444332  000000 


Q ss_pred             CCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeec
Q 038577          565 GGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQIT  622 (860)
Q Consensus       565 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~  622 (860)
                                      ...+.++++  ...||++.+.++ |.||++.++++++.+..+
T Consensus       228 ----------------~~~p~~~~~--~~pyli~~~~~~-iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  228 ----------------SSAPQSVAY--SSPYLIAFSSNS-IEVRSLETGELVQTIPLP  266 (275)
T ss_pred             ----------------CCchhEEEE--ECCEEEEECCCE-EEEEECcCCcEEEEEECC
Confidence                            112456666  456888877755 999999999999988754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.17  E-value=0.005  Score=64.79  Aligned_cols=244  Identities=11%  Similarity=0.122  Sum_probs=124.9

Q ss_pred             cEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe-------ecCCCceEEEEEeeC
Q 038577          330 QLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTF-------TEHTNAVTALHFMAN  402 (860)
Q Consensus       330 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~i~~~~~  402 (860)
                      .|.+|+.... .+..+.-..+.+.++.|+.+. .|++...||.+++||+. |+....+       .-....+....+..+
T Consensus        62 ~I~iys~sG~-ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~  138 (410)
T PF04841_consen   62 SIQIYSSSGK-LLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKN  138 (410)
T ss_pred             EEEEECCCCC-EeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCC
Confidence            3677765443 333332222789999999865 55566789999999986 3331111       111122222233334


Q ss_pred             CCEEEEEeCCCcEEEEEccccc-eeeEee-CCCC-------CcEE-EEEECCCCCEEEEEecCCCeEEEEECCCCceEEE
Q 038577          403 NHSLLSASLDGTVRAWDLFRYR-NFRTFT-TPSS-------RQFV-SLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDI  472 (860)
Q Consensus       403 ~~~l~s~~~dg~i~~wd~~~~~-~~~~~~-~~~~-------~~~~-~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~  472 (860)
                      |-.++  ..++.+.+..-.... ..+.+. .+..       .... ...++.+....+....++ .+.+.+-...+.   
T Consensus       139 GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~-~i~~i~~~~~~~---  212 (410)
T PF04841_consen  139 GIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGE-TIYIIDENSFKQ---  212 (410)
T ss_pred             CEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCC-EEEEEEcccccc---
Confidence            52233  334444333221111 111111 1100       0000 022333444333333333 555444332211   


Q ss_pred             ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcc-cCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCC
Q 038577          473 LSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFP-HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNG  551 (860)
Q Consensus       473 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  551 (860)
                      +. ..+++..+++||+++++|.-..+|.+.+.+..-.+...+... .......+.|.-+...++.-  ...+.+..... 
T Consensus       213 i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~~~-  288 (410)
T PF04841_consen  213 ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVGPDG-  288 (410)
T ss_pred             cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEECCCC-
Confidence            21 246899999999999999999999999988665554444332 23455667776443222222  22343333111 


Q ss_pred             ceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEe
Q 038577          552 ELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQ  620 (860)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~  620 (860)
                                                       ..+.|.-++..++..-.|| ++|..-+.-+.+++.+
T Consensus       289 ---------------------------------~~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp  323 (410)
T PF04841_consen  289 ---------------------------------DSISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVP  323 (410)
T ss_pred             ---------------------------------CceEEeccCceEEeccCCc-eEEEeCCceEEEEECC
Confidence                                             2344555565555555667 8998888888777654

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.15  E-value=0.004  Score=59.42  Aligned_cols=200  Identities=12%  Similarity=0.129  Sum_probs=118.9

Q ss_pred             EeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCc-ccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 038577          302 LSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGH-YFDVNCLAYSPDSQLLATGADDNKVKVWTVSS  380 (860)
Q Consensus       302 ~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  380 (860)
                      +..-...+..++|.|+.+.|++.....+.|..++.+ |+.+.++.-. .+....+++..++.++++--.++.+.++++..
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~   95 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD   95 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence            344445699999999999999998888999888874 6676666432 46688999988887777666689999998843


Q ss_pred             Ce------eEEEee-----cCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccc---cceeeEe-------eCCCCCcEEE
Q 038577          381 GF------CFVTFT-----EHTNAVTALHFMANNHSLLSASLDGTVRAWDLFR---YRNFRTF-------TTPSSRQFVS  439 (860)
Q Consensus       381 ~~------~~~~~~-----~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~---~~~~~~~-------~~~~~~~~~~  439 (860)
                      ..      ....+.     .++..+-.++|++.++.|+.+-......+|.+..   .......       .......+.+
T Consensus        96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~  175 (248)
T PF06977_consen   96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSG  175 (248)
T ss_dssp             --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---E
T ss_pred             cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccc
Confidence            21      111121     2456789999999988888887777777777754   1111111       1122335788


Q ss_pred             EEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcc---------cCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038577          440 LASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHE---------GPVHGLVFSPTNATLASSSWDKTVRLW  504 (860)
Q Consensus       440 ~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~---------~~v~~l~~s~~~~~l~s~~~dg~i~iw  504 (860)
                      ++++|....+++-+..+..+..+| .+|+++..+.-..         ...-.|+|.++|++.++ ++-+..++|
T Consensus       176 l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  176 LSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred             eEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence            899998766666666655999999 5677766553222         35778999999865554 455544443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.09  E-value=0.0034  Score=62.88  Aligned_cols=229  Identities=20%  Similarity=0.229  Sum_probs=137.4

Q ss_pred             eCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE---------
Q 038577          316 ELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVT---------  386 (860)
Q Consensus       316 ~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~---------  386 (860)
                      ..++.+++|+.+ | +.+++........... +...|..+...|+-+.+++-+ |+.+.++++..-.....         
T Consensus         5 ~~~~~L~vGt~~-G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    5 SWGDRLLVGTED-G-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             cCCCEEEEEECC-C-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            457888888654 7 8999983322222221 223399999999887777665 49999999875433331         


Q ss_pred             -----eecCCCceEEEE--EeeCCCEEEEEeCCCcEEEEEcccc-----ceeeEeeCCCCCcEEEEEECCCCCEEEEEec
Q 038577          387 -----FTEHTNAVTALH--FMANNHSLLSASLDGTVRAWDLFRY-----RNFRTFTTPSSRQFVSLASDQSGEVICAGTL  454 (860)
Q Consensus       387 -----~~~~~~~v~~i~--~~~~~~~l~s~~~dg~i~~wd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  454 (860)
                           .......+...+  -...+...+.......|.+|.....     +..+.+..+.  .+..+++.  ++.++++..
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~--~~~~i~~~--~~~i~v~~~  156 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPD--PPSSIAFL--GNKICVGTS  156 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCC--CcEEEEEe--CCEEEEEeC
Confidence                 111223344444  1223334444445568888887653     4556666664  56777777  778888876


Q ss_pred             CCCeEEEEECCCCceEEEecCc------------ccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCccee-EEcccCCC
Q 038577          455 DSFEIFVWSMKTGRLLDILSGH------------EGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSV-ESFPHTHD  521 (860)
Q Consensus       455 ~~~~i~v~d~~~~~~~~~~~~h------------~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~  521 (860)
                      +  ...+.|+.++.....+...            ..++..+.. +++.+|++-  |..-.+.|. .|+... ....=...
T Consensus       157 ~--~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~~  230 (275)
T PF00780_consen  157 K--GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWSSA  230 (275)
T ss_pred             C--ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEEEcCCc
Confidence            6  5899999987665544211            123333333 345666543  333344454 333222 22233345


Q ss_pred             eEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEeccc
Q 038577          522 VLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRR  561 (860)
Q Consensus       522 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  561 (860)
                      +.++++.  ..+|+..+. +.|.||++.++++++++..++
T Consensus       231 p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~~  267 (275)
T PF00780_consen  231 PQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLPN  267 (275)
T ss_pred             hhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECCC
Confidence            5666664  347777665 459999999999999998765

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.07  E-value=0.00082  Score=73.42  Aligned_cols=156  Identities=15%  Similarity=0.047  Sum_probs=91.8

Q ss_pred             CCccCeeEEEEcCCCCEEEEEc------CCC--cEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEeCC--eEEEE
Q 038577           50 ESSSNICRIAVSPDGTFLLTVD------ENQ--RCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGK--LVQIW  119 (860)
Q Consensus        50 ~h~~~v~~va~spdg~~la~~~------~d~--~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~~~--~i~iw  119 (860)
                      +....+...++||||+.+|+..      .|.  .+.+++. .+.. ..+......+.-.|+|||+.|++..++  .+++.
T Consensus       347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVI  424 (591)
T ss_pred             ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecCCCCCCceECCCCCceEEEecCcceEEEe
Confidence            3335688999999999998765      233  4555554 2322 333333458899999999988887443  22222


Q ss_pred             -----------eCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCc-ccccceEeec
Q 038577          120 -----------RSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGI-HTNKPFLLLG  187 (860)
Q Consensus       120 -----------d~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~-~~~~~~~~~~  187 (860)
                                 ++..++.        ..  ...+.|..+.|||||.+++... ++.|.+=-+.....+. .......+..
T Consensus       425 ~~~~~gql~~~~vd~ge~--------~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~  493 (591)
T PRK13616        425 RDPATGQLARTPVDASAV--------AS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGP  493 (591)
T ss_pred             ccCCCceEEEEeccCchh--------hh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeec
Confidence                       3332221        11  2356799999999999988876 4777773333221110 1111222332


Q ss_pred             -CCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeec
Q 038577          188 -HRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFS  224 (860)
Q Consensus       188 -h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~  224 (860)
                       -...+.++.|..++.      |+.+..++.-.+|.+.
T Consensus       494 ~l~~~~~~l~W~~~~~------L~V~~~~~~~~v~~v~  525 (591)
T PRK13616        494 GLGDTAVSLDWRTGDS------LVVGRSDPEHPVWYVN  525 (591)
T ss_pred             ccCCccccceEecCCE------EEEEecCCCCceEEEe
Confidence             334468899999986      4455555545555544

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.04  E-value=0.0051  Score=65.90  Aligned_cols=250  Identities=14%  Similarity=0.112  Sum_probs=129.6

Q ss_pred             eeEEEEcCCCCEEEEE-cCC----CcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEE---e---------CCeEE
Q 038577           55 ICRIAVSPDGTFLLTV-DEN----QRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG---T---------GKLVQ  117 (860)
Q Consensus        55 v~~va~spdg~~la~~-~~d----~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~---~---------~~~i~  117 (860)
                      +..+++||||+++|.+ +..    ..+++.|+.+|+.+...-....-..+.|.+|++.+...   .         ...|+
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~  205 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY  205 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence            4478999999999975 333    45999999999887643212222349999999887776   1         34578


Q ss_pred             EEeCCCCCcccceeEEEEEeeccCC--CeEEEEEcCCCCeEEEeecC----CeEEEEeecccccCcccccceEeecCCCc
Q 038577          118 IWRSPGFKKEVFAFELIRTLADCND--KVTALNWSPDSNYLLVGSKD----LAVRLFYVKEKLKGIHTNKPFLLLGHRDS  191 (860)
Q Consensus       118 iwd~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s~d~~~l~s~~~d----g~v~vwd~~~~~~~~~~~~~~~~~~h~~~  191 (860)
                      .|.+.+....   -  ...+.....  ....+..++|+++|+.....    ..+.+-+.....  ........+..+...
T Consensus       206 ~~~~gt~~~~---d--~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~--~~~~~~~~l~~~~~~  278 (414)
T PF02897_consen  206 RHKLGTPQSE---D--ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG--SPDAKPKLLSPREDG  278 (414)
T ss_dssp             EEETTS-GGG------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT--TSS-SEEEEEESSSS
T ss_pred             EEECCCChHh---C--eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC--CCcCCcEEEeCCCCc
Confidence            8888776432   1  122333222  25688899999998865432    345555655420  001233444444444


Q ss_pred             EEE-EEEccCCCCCccceEEEEcC---CccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCce
Q 038577          192 VVG-CFFSVDKKTDKVNRIYTIAR---DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKV  267 (860)
Q Consensus       192 i~~-~~~~~~~~~~~~~~l~s~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  267 (860)
                      +.. +... .+.     +++....   ++.|...++.....                     ..|..    .+..+...+
T Consensus       279 ~~~~v~~~-~~~-----~yi~Tn~~a~~~~l~~~~l~~~~~---------------------~~~~~----~l~~~~~~~  327 (414)
T PF02897_consen  279 VEYYVDHH-GDR-----LYILTNDDAPNGRLVAVDLADPSP---------------------AEWWT----VLIPEDEDV  327 (414)
T ss_dssp             -EEEEEEE-TTE-----EEEEE-TT-TT-EEEEEETTSTSG---------------------GGEEE----EEE--SSSE
T ss_pred             eEEEEEcc-CCE-----EEEeeCCCCCCcEEEEeccccccc---------------------cccee----EEcCCCCce
Confidence            433 3333 332     2222222   23444444443211                     12221    222333333


Q ss_pred             EEEEecCCCCEEEEE-EcC--CeEEEEECCCceeEEEEee-cCceeEEEEEeeCCCEEEEEEcc---CCcEEEEEccCce
Q 038577          268 TACDYHRGLDMVVVG-FSN--GVFGLYQMPDFVCIHLLSI-SREKITTAVFNELGNWLVFGCAK---LGQLLVWEWRSES  340 (860)
Q Consensus       268 ~~~~~~~~~~~l~~~-~~~--g~i~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~~---~g~i~v~d~~~~~  340 (860)
                      .-..+...+++|++. ..+  ..|+++++..+.....+.. ..+.+..+...++++.+.+..+.   -+.+..||+.+++
T Consensus       328 ~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~  407 (414)
T PF02897_consen  328 SLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE  407 (414)
T ss_dssp             EEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred             eEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence            333333445555544 444  3678889873444444443 34456666666666666555432   3577788887776


Q ss_pred             EE
Q 038577          341 YI  342 (860)
Q Consensus       341 ~~  342 (860)
                      ..
T Consensus       408 ~~  409 (414)
T PF02897_consen  408 LT  409 (414)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.97  E-value=0.0027  Score=65.08  Aligned_cols=177  Identities=17%  Similarity=0.177  Sum_probs=113.4

Q ss_pred             CeEEEEECCCCcEEeec-cCCccCeeE---EEEcCC----CCEEEEEcC---------C-CcEEEEEcccC-------eE
Q 038577           32 NRVSVTDLIKSKTVTLP-VESSSNICR---IAVSPD----GTFLLTVDE---------N-QRCHFINLHCH-------VV   86 (860)
Q Consensus        32 ~~i~v~d~~~~~~~~~~-~~h~~~v~~---va~spd----g~~la~~~~---------d-~~i~vwd~~~~-------~~   86 (860)
                      +.|++.|..+.+.+... ......+.+   +.+..+    ..++++|..         . |.|.++++...       +.
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            46888998888764322 123333444   444433    578887632         2 89999999884       33


Q ss_pred             EEEeecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEE
Q 038577           87 LHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVR  166 (860)
Q Consensus        87 ~~~~~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~  166 (860)
                      +.....+++|++++--  +.+|+++.++.|.+|++...+.    +.....+.. ...+.++...  +++++.|.....+.
T Consensus        82 i~~~~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~----l~~~~~~~~-~~~i~sl~~~--~~~I~vgD~~~sv~  152 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKT----LLKKAFYDS-PFYITSLSVF--KNYILVGDAMKSVS  152 (321)
T ss_dssp             EEEEEESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSS----EEEEEEE-B-SSSEEEEEEE--TTEEEEEESSSSEE
T ss_pred             EEEEeecCcceEhhhh--CCEEEEeecCEEEEEEccCccc----chhhheecc-eEEEEEEecc--ccEEEEEEcccCEE
Confidence            3444478999999876  3448888899999999988761    112222222 2356666554  56999999888899


Q ss_pred             EEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecC
Q 038577          167 LFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSG  225 (860)
Q Consensus       167 vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  225 (860)
                      ++..+.....   .....-......+.++.|.++++     .++.+..+|.+.++....
T Consensus       153 ~~~~~~~~~~---l~~va~d~~~~~v~~~~~l~d~~-----~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  153 LLRYDEENNK---LILVARDYQPRWVTAAEFLVDED-----TIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EEEEETTTE----EEEEEEESS-BEEEEEEEE-SSS-----EEEEEETTSEEEEEEE-S
T ss_pred             EEEEEccCCE---EEEEEecCCCccEEEEEEecCCc-----EEEEEcCCCeEEEEEECC
Confidence            8876653111   11122233456688999987776     899999999999998864

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.91  E-value=0.0044  Score=63.54  Aligned_cols=173  Identities=11%  Similarity=0.094  Sum_probs=107.4

Q ss_pred             CcEEEEECCCCeeEEEeecC-CCceEEEEEee-------CCCEEEEEeC----------CCcEEEEEcccc-----ceee
Q 038577          371 NKVKVWTVSSGFCFVTFTEH-TNAVTALHFMA-------NNHSLLSASL----------DGTVRAWDLFRY-----RNFR  427 (860)
Q Consensus       371 g~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~-------~~~~l~s~~~----------dg~i~~wd~~~~-----~~~~  427 (860)
                      ..|++.|..+.+.+..+.-. ...+.+++...       ...+++.|..          .|.+.++++.+.     +...
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            35788888777766655432 33455544432       2456665542          288999999884     3322


Q ss_pred             EeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCc-eEEEecC-cccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038577          428 TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGR-LLDILSG-HEGPVHGLVFSPTNATLASSSWDKTVRLWN  505 (860)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~-~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  505 (860)
                      .........+.+++.-  +..++++...  .+++|++...+ ....-.- ....+.++...  +.+++.|.....+.++.
T Consensus        82 i~~~~~~g~V~ai~~~--~~~lv~~~g~--~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~  155 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF--NGRLVVAVGN--KLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLR  155 (321)
T ss_dssp             EEEEEESS-EEEEEEE--TTEEEEEETT--EEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEE
T ss_pred             EEEEeecCcceEhhhh--CCEEEEeecC--EEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEE
Confidence            2233345567777665  3345555543  89999998877 4433221 22355666554  66999999888888886


Q ss_pred             ccCCcc-eeEEc--ccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCC
Q 038577          506 VFEGKG-SVESF--PHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPL  549 (860)
Q Consensus       506 ~~~~~~-~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  549 (860)
                      ...... .....  .....++++.|-++++.+++++.+|.+.++..+
T Consensus       156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  156 YDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             EEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            654322 22222  245568899998777899999999999999875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=97.90  E-value=0.00011  Score=62.56  Aligned_cols=121  Identities=19%  Similarity=0.232  Sum_probs=101.4

Q ss_pred             hhcCcCCcHHHHHHHHhcCChHHHHHHhHhcC----------CCccchhcccCCHHHHHHHHHHHHhhhccCCChhhHHH
Q 038577          732 AALNEDQPKRALILSLRLNEDNLIKKCIFAIS----------PVDIPAVASSIPYRYMQRLIEALSDLLESCPHLEFMLR  801 (860)
Q Consensus       732 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~----------~~~i~~~~~~l~~~~~~~ll~~l~~~l~~~~~~~~~~~  801 (860)
                      ..+..++|..++..|++++-.-.++++++.+-          -..|+.++..|+.+.+..||+|+..|-.+.++...+|.
T Consensus         6 N~l~~~~y~~Al~LAl~L~~P~~ll~i~~~~~~~~~~~~~~g~~~l~~~i~~L~~~~l~~LL~~ir~WNTNsr~~~vAQ~   85 (141)
T PF08625_consen    6 NLLRQKDYKEALRLALKLDHPFRLLKILKDLLETEEDEDSIGSEELDEVIKKLDDEQLEKLLRFIRDWNTNSRTSHVAQR   85 (141)
T ss_pred             HHHHhhhHHHHHHHHHhcCCcHHHHHHHHHHHhcccccccchHHHHHHHHHhcCHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            44567899999999999998888887777665          14589999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh-hhhcccchhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHh
Q 038577          802 WCQELCKTHGNT-IQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLC  854 (860)
Q Consensus       802 ~l~~~l~~H~~~-l~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~l~~~~  854 (860)
                      .|+.+|+.|... |...+ .+.+.++.|.-=-++.+++++++... .++|.|+-
T Consensus        86 vL~~il~~~~~~~L~~~~-~~~~~le~lipYteRH~~Rl~~L~q~-syllDy~l  137 (141)
T PF08625_consen   86 VLNAILKSHPPEELLKIP-GLKEILEALIPYTERHFQRLDRLLQK-SYLLDYTL  137 (141)
T ss_pred             HHHHHHHhCCHHHHHccc-cHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHH
Confidence            999999998654 44554 78888888888889999999997765 44667654

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.84  E-value=0.012  Score=58.39  Aligned_cols=200  Identities=16%  Similarity=0.169  Sum_probs=126.3

Q ss_pred             EEcCCCCE-EEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCC--
Q 038577          356 AYSPDSQL-LATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTP--  432 (860)
Q Consensus       356 ~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--  432 (860)
                      .|.++... +.+--..+.|.-|+..++.... +. +.+.+.++.....+..|+++..  .+.+++..++.....+...  
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~  106 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED  106 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence            46666663 4444456788888887654332 22 2333444444444445555543  4566676555543333221  


Q ss_pred             --CCCcEEEEEECCCCCEEEEEec-----C-----CCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCC-C
Q 038577          433 --SSRQFVSLASDQSGEVICAGTL-----D-----SFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWD-K  499 (860)
Q Consensus       433 --~~~~~~~~~~~~~~~~l~~~~~-----~-----~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g  499 (860)
                        .........+.|+|.+.+....     .     .+.++.+|. .+..++.+..+-..-+.|+||||++.|..+... +
T Consensus       107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~  185 (307)
T COG3386         107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN  185 (307)
T ss_pred             CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence              2234567888999998877655     1     124555554 577777777777777899999999888877654 7


Q ss_pred             cEEEEEccC--Cc---c--eeEEcccCCCeEEEEEeeCCCEEEEEeCCC-eEEEEeCCCCceeEEEeccc
Q 038577          500 TVRLWNVFE--GK---G--SVESFPHTHDVLTVVYRPDGRQLACSTLDG-QIHFWDPLNGELMYTIEGRR  561 (860)
Q Consensus       500 ~i~iwd~~~--~~---~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~  561 (860)
                      .|.-|++..  +.   .  ........+..-.++...+|.+.+++..+| .|.+|+.. |+++..+..+.
T Consensus       186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~  254 (307)
T COG3386         186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV  254 (307)
T ss_pred             eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC
Confidence            788887752  11   1  111112445666788888998876655554 89999998 99999888774

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.84  E-value=0.0098  Score=59.12  Aligned_cols=222  Identities=13%  Similarity=0.038  Sum_probs=132.3

Q ss_pred             EEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeec--
Q 038577          312 AVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTE--  389 (860)
Q Consensus       312 ~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--  389 (860)
                      ..|.++...|+.+.-..+.|.-|+..++......  +...+.++..-..+..|+++..  .+.+++.+++..+..+..  
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~--~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~  105 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFP--SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE  105 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE--CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence            3456666766666666688888888765433221  2222344444444445555443  466777665555333221  


Q ss_pred             ---CCCceEEEEEeeCCCEEEEEeC-----C----CcEEEEEcc-ccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC
Q 038577          390 ---HTNAVTALHFMANNHSLLSASL-----D----GTVRAWDLF-RYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS  456 (860)
Q Consensus       390 ---~~~~v~~i~~~~~~~~l~s~~~-----d----g~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  456 (860)
                         .....+.....|+|.+.++...     .    ..-.+|-+. .+...+.+ ...-...+.++||||++.++.+....
T Consensus       106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~-~~~~~~~NGla~SpDg~tly~aDT~~  184 (307)
T COG3386         106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL-DDDLTIPNGLAFSPDGKTLYVADTPA  184 (307)
T ss_pred             CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEee-cCcEEecCceEECCCCCEEEEEeCCC
Confidence               1235567888899876664433     0    111344444 33333333 22233457899999999999988876


Q ss_pred             CeEEEEECCC--C----c-eEEEecCcccCeEEEEEcCCCCEEEEEeCCC-cEEEEEccCCcceeEEcccCCCeEEEEEe
Q 038577          457 FEIFVWSMKT--G----R-LLDILSGHEGPVHGLVFSPTNATLASSSWDK-TVRLWNVFEGKGSVESFPHTHDVLTVVYR  528 (860)
Q Consensus       457 ~~i~v~d~~~--~----~-~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  528 (860)
                      +.|+-|++..  +    + ....+..+.+..-.++...+|.+.+++..+| .|.+|+.. ++.+....-....+++++|-
T Consensus       185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~Fg  263 (307)
T COG3386         185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFG  263 (307)
T ss_pred             CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEe
Confidence            6899998762  2    1 1122233456667788888888876555554 89999987 76666665555777777775


Q ss_pred             -eCCCEEEEEeC
Q 038577          529 -PDGRQLACSTL  539 (860)
Q Consensus       529 -~~~~~l~~~~~  539 (860)
                       |+.+.|++.+.
T Consensus       264 G~~~~~L~iTs~  275 (307)
T COG3386         264 GPDLNTLYITSA  275 (307)
T ss_pred             CCCcCEEEEEec
Confidence             34555555543

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.79  E-value=0.0097  Score=55.55  Aligned_cols=234  Identities=12%  Similarity=0.123  Sum_probs=144.3

Q ss_pred             EEEEecCCCCE-EEEEEcCCe-EEEEECCCceeEEEEeecCc--eeEEEEEeeCCCEEEEEEcc----CCcEEEEEccCc
Q 038577          268 TACDYHRGLDM-VVVGFSNGV-FGLYQMPDFVCIHLLSISRE--KITTAVFNELGNWLVFGCAK----LGQLLVWEWRSE  339 (860)
Q Consensus       268 ~~~~~~~~~~~-l~~~~~~g~-i~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~~----~g~i~v~d~~~~  339 (860)
                      ..++++|.... ++.+-.-|+ ..++|....+.+..+....+  -.-.-.|||||.+|..+-.+    .|.|-+||.+.+
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~  150 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG  150 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence            45666775543 445555554 45788877777766654433  24456899999999887543    378999998754


Q ss_pred             -eEEEEecCcccCeEEEEEcCCCCEEEEEeCC------------------CcEEEEECCCCeeEEE--ee--cCCCceEE
Q 038577          340 -SYILKQQGHYFDVNCLAYSPDSQLLATGADD------------------NKVKVWTVSSGFCFVT--FT--EHTNAVTA  396 (860)
Q Consensus       340 -~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------------------g~i~iwd~~~~~~~~~--~~--~~~~~v~~  396 (860)
                       ..+.++..|.-....+.+.+||+.++.+...                  -++.+.|..+|..+..  +.  .+.-.|..
T Consensus       151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRH  230 (366)
T COG3490         151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRH  230 (366)
T ss_pred             cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceee
Confidence             4456667777777889999999998876431                  1222333333433321  11  24456778


Q ss_pred             EEEeeCCCEEEEEeCCCc-----EEEEEccccceeeEeeCCCC------CcEEEEEECCCCCEEEEEecCCCeEEEEECC
Q 038577          397 LHFMANNHSLLSASLDGT-----VRAWDLFRYRNFRTFTTPSS------RQFVSLASDQSGEVICAGTLDSFEIFVWSMK  465 (860)
Q Consensus       397 i~~~~~~~~l~s~~~dg~-----i~~wd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~  465 (860)
                      ++..+||..++.+-..|.     --+=-...++.+..+..+..      ..+-+++.+.+..+++..+..++...+||..
T Consensus       231 ld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~  310 (366)
T COG3490         231 LDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAA  310 (366)
T ss_pred             eeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcC
Confidence            888888866555433331     11112233444444444332      3467888888888888888888799999999


Q ss_pred             CCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038577          466 TGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN  505 (860)
Q Consensus       466 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  505 (860)
                      +|..+..-.-  .....++-  ...-++..+.+|.+.++.
T Consensus       311 tG~vv~~a~l--~daaGva~--~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         311 TGAVVSEAAL--PDAAGVAA--AKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             CCcEEecccc--ccccccee--ccCceEEecCCceEEecc
Confidence            9988754321  11222333  333356666788888774

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.73  E-value=0.0038  Score=69.20  Aligned_cols=142  Identities=12%  Similarity=0.055  Sum_probs=101.2

Q ss_pred             CEEEEEEccCCcEEEEEccCceEEEEecCcccC-eEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCe--eEEE-e--
Q 038577          319 NWLVFGCAKLGQLLVWEWRSESYILKQQGHYFD-VNCLAYSP-----DSQLLATGADDNKVKVWTVSSGF--CFVT-F--  387 (860)
Q Consensus       319 ~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~-v~~~~~s~-----~~~~l~~~~~dg~i~iwd~~~~~--~~~~-~--  387 (860)
                      +.|+....+...|+-.|++.|+.+..+..|... |..++-..     +....++|-.++.+..||++-..  ++.. .  
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~  573 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ  573 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence            344444345588999999999999999877644 55544321     13345677788899999988532  2211 1  


Q ss_pred             ecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEEC
Q 038577          388 TEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSM  464 (860)
Q Consensus       388 ~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~  464 (860)
                      ........|++-+.+| +|++|+.+|.||+||- .++..++....-..+|..+.++.||+++++.+..  .+.+++.
T Consensus       574 Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t--yLlLi~t  646 (794)
T PF08553_consen  574 YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKT--YLLLIDT  646 (794)
T ss_pred             cccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc--eEEEEEE
Confidence            1234567788877777 8999999999999994 4444555544556799999999999999988876  6888775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.70  E-value=0.0011  Score=73.22  Aligned_cols=134  Identities=16%  Similarity=0.199  Sum_probs=95.6

Q ss_pred             CCCcEEEEEccccceeeEeeCCCCCcEEEEEECC-----CCCEEEEEecCCCeEEEEECCCC--ceEEE-e--cCcccCe
Q 038577          411 LDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQ-----SGEVICAGTLDSFEIFVWSMKTG--RLLDI-L--SGHEGPV  480 (860)
Q Consensus       411 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~i~v~d~~~~--~~~~~-~--~~h~~~v  480 (860)
                      ....++-.|+.+++.+..+......++..++.+.     ...-.++|-.++ .+..||.+-.  +++.. .  .......
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n-~lfriDpR~~~~k~v~~~~k~Y~~~~~F  580 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDN-SLFRIDPRLSGNKLVDSQSKQYSSKNNF  580 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCC-ceEEeccCCCCCceeeccccccccCCCc
Confidence            4578999999999999999988776666665432     123344565666 8999999853  23311 1  1234567


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeE-EcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeC
Q 038577          481 HGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVE-SFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDP  548 (860)
Q Consensus       481 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  548 (860)
                      +|++-+.+| +||.|+.+|.||+||-. +..... +.+...+|..|..+.||+++++.+ +..+.+++.
T Consensus       581 s~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  581 SCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             eEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            788777666 79999999999999943 333333 335689999999999999988877 556778875

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15)

Probab=97.70  E-value=0.00041  Score=60.31  Aligned_cols=117  Identities=11%  Similarity=0.068  Sum_probs=101.1

Q ss_pred             HHHHHhhcCcCCcHHHHHHHH-hcCChHHHHHHhHhcCC-CccchhcccCCHHHHHHHHHHHHhhhccCCChhhHHHHHH
Q 038577          727 PEAVDAALNEDQPKRALILSL-RLNEDNLIKKCIFAISP-VDIPAVASSIPYRYMQRLIEALSDLLESCPHLEFMLRWCQ  804 (860)
Q Consensus       727 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~~~~~-~~i~~~~~~l~~~~~~~ll~~l~~~l~~~~~~~~~~~~l~  804 (860)
                      .......+..-+|..+|..++ ...+.+.+..+|+.+.. ..++.++...+...+.++|+|+...+...+.+.++.-++.
T Consensus        22 l~~~D~~Lr~F~y~~ALD~aL~~~~~p~~~vavl~EL~~R~~L~~AL~~Rde~~L~piL~Fl~k~i~~pr~~~~l~~v~~  101 (148)
T PF09384_consen   22 LSKYDKLLRKFRYKKALDAALVKNKSPEVVVAVLEELIRRGALRAALAGRDEESLEPILKFLIKNITDPRYTRILVDVAN  101 (148)
T ss_pred             chHHHHHHHcCCHHHHHHHHHhcCCChHHHHHHHHHHHHccHHHHHHHhCCHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence            334455667789999999999 67888999999888875 7889999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhh
Q 038577          805 ELCKTHGNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCS  844 (860)
Q Consensus       805 ~~l~~H~~~l~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~  844 (860)
                      .+|-+.+..+..++ .+...+..|++.+++..+..++++.
T Consensus       102 ~ildiY~~~~~~s~-~v~~~~~~L~~~v~~E~~~~~~l~~  140 (148)
T PF09384_consen  102 IILDIYSPVIGQSP-EVDKLFQKLQRKVQEELQLQKELLE  140 (148)
T ss_pred             HHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999997765 7888999999999988776666543

This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.70  E-value=0.021  Score=58.81  Aligned_cols=89  Identities=15%  Similarity=0.093  Sum_probs=60.5

Q ss_pred             eccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCce-eEEEEEeeC-----------------C
Q 038577          257 KDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREK-ITTAVFNEL-----------------G  318 (860)
Q Consensus       257 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~-i~~~~~s~~-----------------~  318 (860)
                      ...+......+.+++.+|.+++.++...-|.|.++|+..+..++.+++-.+. +.-+.....                 .
T Consensus       300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~  379 (415)
T PF14655_consen  300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA  379 (415)
T ss_pred             EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcce
Confidence            3445556667899999999998888877799999999988888777665432 111111111                 1


Q ss_pred             CEEEEEEccCCcEEEEEccCceEEEEe
Q 038577          319 NWLVFGCAKLGQLLVWEWRSESYILKQ  345 (860)
Q Consensus       319 ~~l~~~~~~~g~i~v~d~~~~~~~~~~  345 (860)
                      .+|++-....|.|.||.++.+..+..+
T Consensus       380 l~LvIyaprRg~lEvW~~~~g~Rv~a~  406 (415)
T PF14655_consen  380 LFLVIYAPRRGILEVWSMRQGPRVAAF  406 (415)
T ss_pred             EEEEEEeccCCeEEEEecCCCCEEEEE
Confidence            234444444589999998887766554

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.65  E-value=0.02  Score=54.14  Aligned_cols=173  Identities=12%  Similarity=0.144  Sum_probs=122.5

Q ss_pred             eecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCC
Q 038577          387 FTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT  466 (860)
Q Consensus       387 ~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~  466 (860)
                      +.+-...+.++.|+|+.+.|++......-.++=-..++.+++++...-.....+.+..+|.++++--.+. .++++.+..
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~-~l~~~~vd~  159 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDR-ALYLFTVDA  159 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcc-eEEEEEEcC
Confidence            3445566999999999999999988888888877789999999888777778888888888887777776 888888775


Q ss_pred             CceEEEe----------cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc---c-------cCCCeEEEE
Q 038577          467 GRLLDIL----------SGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF---P-------HTHDVLTVV  526 (860)
Q Consensus       467 ~~~~~~~----------~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~-------~~~~v~~~~  526 (860)
                      +..+...          .........++|.|....|..+-+-.-+.||.+..........   .       .-..+.++.
T Consensus       160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~  239 (316)
T COG3204         160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE  239 (316)
T ss_pred             CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence            5322111          1124567889999999999988888888888776443111111   1       123567788


Q ss_pred             Eee-CCCEEEEEeCCCeEEEEeCCCCceeEEEeccc
Q 038577          527 YRP-DGRQLACSTLDGQIHFWDPLNGELMYTIEGRR  561 (860)
Q Consensus       527 ~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  561 (860)
                      |.+ .+.+|+-+.+++.+.-.|. +|..+..+.-+.
T Consensus       240 ~~~~~~~LLVLS~ESr~l~Evd~-~G~~~~~lsL~~  274 (316)
T COG3204         240 FNAITNSLLVLSDESRRLLEVDL-SGEVIELLSLTK  274 (316)
T ss_pred             ecCCCCcEEEEecCCceEEEEec-CCCeeeeEEecc
Confidence            886 4556666777777777776 455555554443

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.64  E-value=0.19  Score=56.92  Aligned_cols=194  Identities=10%  Similarity=0.093  Sum_probs=117.0

Q ss_pred             CCEEEEEEccCCcEEEEEccCceEEEEecCccc--------CeEEEEEc----------------CCCCEEEEEeCCCcE
Q 038577          318 GNWLVFGCAKLGQLLVWEWRSESYILKQQGHYF--------DVNCLAYS----------------PDSQLLATGADDNKV  373 (860)
Q Consensus       318 ~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~--------~v~~~~~s----------------~~~~~l~~~~~dg~i  373 (860)
                      +..+.+++.. +.|.-.|..+|+.+.++.....        ..+.+++.                .++..++.++.|+.+
T Consensus       194 gg~lYv~t~~-~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L  272 (764)
T TIGR03074       194 GDTLYLCTPH-NKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL  272 (764)
T ss_pred             CCEEEEECCC-CeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence            3444444443 7888888888888777643211        01223332                134578889999999


Q ss_pred             EEEECCCCeeEEEeecCCCceE-------------EEEEee--CCCEEEEEeC----------CCcEEEEEccccceeeE
Q 038577          374 KVWTVSSGFCFVTFTEHTNAVT-------------ALHFMA--NNHSLLSASL----------DGTVRAWDLFRYRNFRT  428 (860)
Q Consensus       374 ~iwd~~~~~~~~~~~~~~~~v~-------------~i~~~~--~~~~l~s~~~----------dg~i~~wd~~~~~~~~~  428 (860)
                      .-.|..+|+....+.. .+.|.             .+.-.|  .+..++.++.          +|.|+-+|..+++....
T Consensus       273 iALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~  351 (764)
T TIGR03074       273 IALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA  351 (764)
T ss_pred             EEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence            9999999998876632 11110             011111  1235565542          68899999999998877


Q ss_pred             eeCCCC-----------------CcEEEEEECCCCCEEEEEecC-----------------CCeEEEEECCCCceEEEec
Q 038577          429 FTTPSS-----------------RQFVSLASDQSGEVICAGTLD-----------------SFEIFVWSMKTGRLLDILS  474 (860)
Q Consensus       429 ~~~~~~-----------------~~~~~~~~~~~~~~l~~~~~~-----------------~~~i~v~d~~~~~~~~~~~  474 (860)
                      +.....                 ..-..+++++....++.+..+                 .+.|.-.|.++|+..-.++
T Consensus       352 ~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q  431 (764)
T TIGR03074       352 WDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQ  431 (764)
T ss_pred             EecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEec
Confidence            753210                 011345666666666653321                 1267778889999887775


Q ss_pred             CcccCeE---------EEEEcC-CCC---EEEEEeCCCcEEEEEccCCccee
Q 038577          475 GHEGPVH---------GLVFSP-TNA---TLASSSWDKTVRLWNVFEGKGSV  513 (860)
Q Consensus       475 ~h~~~v~---------~l~~s~-~~~---~l~s~~~dg~i~iwd~~~~~~~~  513 (860)
                      .....+.         -+.+.. +|+   .++.++.+|.+++.|-++++.+.
T Consensus       432 ~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~  483 (764)
T TIGR03074       432 TVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV  483 (764)
T ss_pred             ccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence            4211111         122222 553   78889999999999998887543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.64  E-value=0.025  Score=52.94  Aligned_cols=267  Identities=11%  Similarity=0.099  Sum_probs=150.7

Q ss_pred             ccCeEEEEeecCCceeEEEECCCCC-EEEEE--eCCeEEEEeCCCCCcccc-eeEEEEEeeccCCCeEEEEEcCCCCeEE
Q 038577           82 HCHVVLHRVRFKYPVNAILFSPNGK-YIAVG--TGKLVQIWRSPGFKKEVF-AFELIRTLADCNDKVTALNWSPDSNYLL  157 (860)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~fspdg~-~la~~--~~~~i~iwd~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~s~d~~~l~  157 (860)
                      +.|+++........-..|+|+|-.. -++.+  ..-...++|..+.+.... ....-+.+.+|      =.|||||.+|.
T Consensus        56 eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGH------Gvfs~dG~~LY  129 (366)
T COG3490          56 EAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGH------GVFSPDGRLLY  129 (366)
T ss_pred             cCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecc------cccCCCCcEEE
Confidence            3577777777788888999999764 45555  345677899888764210 00011223344      36999999998


Q ss_pred             EeecC-----CeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEe-eecCCCCCCc
Q 038577          158 VGSKD-----LAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSW-GFSGNDGKID  231 (860)
Q Consensus       158 s~~~d-----g~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w-~~~~~~~~~~  231 (860)
                      ..-+|     |.|-|||...+.     ...-.+..|.-....+.+.+||.     .++.+.  |-|..- +....+.  .
T Consensus       130 ATEndfd~~rGViGvYd~r~~f-----qrvgE~~t~GiGpHev~lm~DGr-----tlvvan--GGIethpdfgR~~l--N  195 (366)
T COG3490         130 ATENDFDPNRGVIGVYDAREGF-----QRVGEFSTHGIGPHEVTLMADGR-----TLVVAN--GGIETHPDFGRTEL--N  195 (366)
T ss_pred             eecCCCCCCCceEEEEeccccc-----ceecccccCCcCcceeEEecCCc-----EEEEeC--CceecccccCcccc--c
Confidence            76543     789999998662     34556777887888899999998     666654  333332 1111000  0


Q ss_pred             cccCCCCCCCCCCCcceeeeEEeeeecccc--CCCCceEEEEecCCCCEEEEEEcCCeE-----EEEECCCceeEEEEee
Q 038577          232 ETMEDSEPPSPGTPERRVKKWGLLRKDDFS--QAPSKVTACDYHRGLDMVVVGFSNGVF-----GLYQMPDFVCIHLLSI  304 (860)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~g~i-----~~~~~~~~~~~~~~~~  304 (860)
                      ....++.     -..-+...-++..+..++  .+.-.+..++..++|..++-+-..|.-     .+=-...++.+..+..
T Consensus       196 ldsMePS-----lvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~  270 (366)
T COG3490         196 LDSMEPS-----LVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDL  270 (366)
T ss_pred             hhhcCcc-----EEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCC
Confidence            0000000     000000011122233343  345567788888888766544333210     0000112222222222


Q ss_pred             cC-------ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038577          305 SR-------EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWT  377 (860)
Q Consensus       305 ~~-------~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  377 (860)
                      ..       .-|-+++.+.+..+++.++-..+...+||..++..+....-.  .+..++-  ...-+++.+.+|.+.++.
T Consensus       271 pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~--daaGva~--~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         271 PEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP--DAAGVAA--AKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             CHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc--cccccee--ccCceEEecCCceEEecc
Confidence            21       346788888888888888877678899999999887654321  1223333  333355666678888774

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.64  E-value=0.094  Score=53.23  Aligned_cols=222  Identities=11%  Similarity=0.118  Sum_probs=113.7

Q ss_pred             CCCEEEEEEccCCcEEEEEccCc----eEEEEecC---cc----cCeEEEEEcCCCCEEEEEeC------CCcEEEEECC
Q 038577          317 LGNWLVFGCAKLGQLLVWEWRSE----SYILKQQG---HY----FDVNCLAYSPDSQLLATGAD------DNKVKVWTVS  379 (860)
Q Consensus       317 ~~~~l~~~~~~~g~i~v~d~~~~----~~~~~~~~---~~----~~v~~~~~s~~~~~l~~~~~------dg~i~iwd~~  379 (860)
                      +.++|++.+-.++.|+|.|+.+.    +....+..   +.    .....+..-|+|+.++++-.      -|.+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            56888888888899999998743    33333321   11    22334455678888887532      3568888888


Q ss_pred             CCeeEEEeecCCC---ceEEEEEeeCCCEEEEEeC--------------------CCcEEEEEccccceeeEeeCCCCCc
Q 038577          380 SGFCFVTFTEHTN---AVTALHFMANNHSLLSASL--------------------DGTVRAWDLFRYRNFRTFTTPSSRQ  436 (860)
Q Consensus       380 ~~~~~~~~~~~~~---~v~~i~~~~~~~~l~s~~~--------------------dg~i~~wd~~~~~~~~~~~~~~~~~  436 (860)
                      +.+..........   --..+-|.|..+.++|...                    ..++.+||+.+.+.++++..+....
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            7777766654322   2356677887778887653                    3479999999999999999886543


Q ss_pred             -EEEEEE--CCCCCEEEEEecCCCeEEEEEC-CCCce----EEEecCc-----------------ccCeEEEEEcCCCCE
Q 038577          437 -FVSLAS--DQSGEVICAGTLDSFEIFVWSM-KTGRL----LDILSGH-----------------EGPVHGLVFSPTNAT  491 (860)
Q Consensus       437 -~~~~~~--~~~~~~l~~~~~~~~~i~v~d~-~~~~~----~~~~~~h-----------------~~~v~~l~~s~~~~~  491 (860)
                       ...+.|  .|+..+-++++.-...|..|-- ..++-    +..+...                 ..-|++|.+|.|.++
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf  325 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF  325 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence             334554  5666666666554446666654 33321    1122110                 245799999999999


Q ss_pred             EEEEeC-CCcEEEEEccCCcceeEEc----c---------------cCCCeEEEEEeeCCCEEEEEe
Q 038577          492 LASSSW-DKTVRLWNVFEGKGSVESF----P---------------HTHDVLTVVYRPDGRQLACST  538 (860)
Q Consensus       492 l~s~~~-dg~i~iwd~~~~~~~~~~~----~---------------~~~~v~~~~~s~~~~~l~~~~  538 (860)
                      |..+.. +|.|+.||+.........-    +               ..+...-+..|-||+.|++.+
T Consensus       326 LYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  326 LYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             EEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             EEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            887765 8999999998765332211    1               112335677888888887764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.64  E-value=2.3e-05  Score=80.44  Aligned_cols=207  Identities=13%  Similarity=0.144  Sum_probs=129.3

Q ss_pred             CccCeeEEEEcCCC--CEEEEEcCCCcEEEEEcccCeEE---EEeecCCceeEEEECC-CCCEEEEE-----eCCeEEEE
Q 038577           51 SSSNICRIAVSPDG--TFLLTVDENQRCHFINLHCHVVL---HRVRFKYPVNAILFSP-NGKYIAVG-----TGKLVQIW  119 (860)
Q Consensus        51 h~~~v~~va~spdg--~~la~~~~d~~i~vwd~~~~~~~---~~~~~~~~v~~~~fsp-dg~~la~~-----~~~~i~iw  119 (860)
                      ....+.|++.+-+.  ..+++|..+|.|.+-.+....--   ..-++..+.++++|++ |...||+|     .+..+.||
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw  134 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW  134 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence            34567788777544  46788888999998876543221   2223677899999998 67889998     56799999


Q ss_pred             eCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEcc
Q 038577          120 RSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSV  199 (860)
Q Consensus       120 d~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~  199 (860)
                      |+.++-..  |+.-..-..+......+++|..|.+.+.+|...+.+.++|+....       .....-.+..+..+...|
T Consensus       135 di~s~ltv--Pke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-------~~~~svnTk~vqG~tVdp  205 (783)
T KOG1008|consen  135 DINSLLTV--PKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-------DSVSSVNTKYVQGITVDP  205 (783)
T ss_pred             ecccccCC--CccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-------hhhhhhhhhhcccceecC
Confidence            99986221  111111111233445688999999999999999999999987441       111112233455666777


Q ss_pred             -CCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCE
Q 038577          200 -DKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDM  278 (860)
Q Consensus       200 -~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  278 (860)
                       .+.     ++++-. ||.+.+||...+........                      ..........+..++|+|..+-
T Consensus       206 ~~~n-----Y~cs~~-dg~iAiwD~~rnienpl~~i----------------------~~~~N~~~~~l~~~aycPtrtg  257 (783)
T KOG1008|consen  206 FSPN-----YFCSNS-DGDIAIWDTYRNIENPLQII----------------------LRNENKKPKQLFALAYCPTRTG  257 (783)
T ss_pred             CCCC-----ceeccc-cCceeeccchhhhccHHHHH----------------------hhCCCCcccceeeEEeccCCcc
Confidence             444     666665 99999999533211000000                      1111122346889999996543


Q ss_pred             -EEEEE-cCCeEEEEECC
Q 038577          279 -VVVGF-SNGVFGLYQMP  294 (860)
Q Consensus       279 -l~~~~-~~g~i~~~~~~  294 (860)
                       +++.. ..+.|++|++.
T Consensus       258 lla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  258 LLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             hhhhhccCcceEEEeccc
Confidence             33333 44788888873

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.63  E-value=0.0087  Score=61.60  Aligned_cols=104  Identities=13%  Similarity=0.177  Sum_probs=65.4

Q ss_pred             ccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEec-CCCE
Q 038577          517 PHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSA-DGSY  595 (860)
Q Consensus       517 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-~g~~  595 (860)
                      .....+.+++.+|++++.|+.+.=|.|.++|+.++..++..+|-++..-+-.........   +...-....-.+ ...+
T Consensus       305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~---~~~~~~~~~~~~~~~l~  381 (415)
T PF14655_consen  305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDR---DRSNSNSPKSSSRFALF  381 (415)
T ss_pred             cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeeccccc---ccccccccCCCCcceEE
Confidence            455668999999999999998888999999999999999888877632110000000000   000000000000 0122


Q ss_pred             -EEEecCCCeEEEEECCCceEEEEEeecc
Q 038577          596 -ILAGGSSKYICMYDVADQVLLRRFQITH  623 (860)
Q Consensus       596 -l~~~~~dg~v~vwd~~~~~~~~~~~~~~  623 (860)
                       ++-+-.-|.|.||.+.+|..+..+...+
T Consensus       382 LvIyaprRg~lEvW~~~~g~Rv~a~~v~k  410 (415)
T PF14655_consen  382 LVIYAPRRGILEVWSMRQGPRVAAFNVGK  410 (415)
T ss_pred             EEEEeccCCeEEEEecCCCCEEEEEEeCC
Confidence             3345678999999999999998887644

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.62  E-value=0.035  Score=50.39  Aligned_cols=231  Identities=14%  Similarity=0.186  Sum_probs=127.8

Q ss_pred             CCcEEEe-CCCEEEeee--CCeEEEEECCCCcEEeeccCCccCeeEEEEcCCC---CEEEEEcCCCcEEEEE--cccCeE
Q 038577           15 GGNAVLS-QNTKLISPV--GNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDG---TFLLTVDENQRCHFIN--LHCHVV   86 (860)
Q Consensus        15 ~~~~~~s-dg~~l~~~~--~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg---~~la~~~~d~~i~vwd--~~~~~~   86 (860)
                      |....|. +.+.|.+..  .+.|.-||.++++......+- .....+.+--.|   .+.+.++..-.|.-||  .+....
T Consensus        17 GEgp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~-p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v   95 (310)
T KOG4499|consen   17 GEGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEG-PPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKV   95 (310)
T ss_pred             CCCCceEEecceEEEEEeccCceehhhhhhhheEEEEEec-CcceeEEEEecCCCceEEEeecceEEEEEcccccceeee
Confidence            3467788 667777653  467777999998775443221 113333333222   3444444433444577  333344


Q ss_pred             EEEee------cCCceeEEEECCCCCEEEEE-e---------CCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEc
Q 038577           87 LHRVR------FKYPVNAILFSPNGKYIAVG-T---------GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWS  150 (860)
Q Consensus        87 ~~~~~------~~~~v~~~~fspdg~~la~~-~---------~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  150 (860)
                      .+++.      .+.+.++-..+|+|++.+-. .         .+.++.|-....         +..+...-+--+.++|+
T Consensus        96 ~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~---------v~~i~~~v~IsNgl~Wd  166 (310)
T KOG4499|consen   96 YRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ---------VELIWNCVGISNGLAWD  166 (310)
T ss_pred             eeeccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC---------ceeeehhccCCcccccc
Confidence            44421      34567777889999996544 1         244555533322         12222233334567777


Q ss_pred             CCCCeEEE-eecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCC
Q 038577          151 PDSNYLLV-GSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGK  229 (860)
Q Consensus       151 ~d~~~l~s-~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~  229 (860)
                      .|.+.+.. -+.+-+|.-||.+-. .+   .                .+                 ..=.++|++..+. 
T Consensus       167 ~d~K~fY~iDsln~~V~a~dyd~~-tG---~----------------~s-----------------nr~~i~dlrk~~~-  208 (310)
T KOG4499|consen  167 SDAKKFYYIDSLNYEVDAYDYDCP-TG---D----------------LS-----------------NRKVIFDLRKSQP-  208 (310)
T ss_pred             ccCcEEEEEccCceEEeeeecCCC-cc---c----------------cc-----------------CcceeEEeccCCC-
Confidence            66654443 345556666664322 00   0                00                 0001222222100 


Q ss_pred             CccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCcee
Q 038577          230 IDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKI  309 (860)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i  309 (860)
                                                    +  ..-....++...+|++.++....|.|..+|..+++.+.++......+
T Consensus       209 ------------------------------~--e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qi  256 (310)
T KOG4499|consen  209 ------------------------------F--ESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQI  256 (310)
T ss_pred             ------------------------------c--CCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCce
Confidence                                          0  00011223445688888888999999999999999999999999999


Q ss_pred             EEEEEeeCC-CEEEEEE
Q 038577          310 TTAVFNELG-NWLVFGC  325 (860)
Q Consensus       310 ~~~~~s~~~-~~l~~~~  325 (860)
                      ++++|--.. ..+.+++
T Consensus       257 tsccFgGkn~d~~yvT~  273 (310)
T KOG4499|consen  257 TSCCFGGKNLDILYVTT  273 (310)
T ss_pred             EEEEecCCCccEEEEEe
Confidence            999997432 3444443

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=97.60  E-value=0.2  Score=56.01  Aligned_cols=173  Identities=13%  Similarity=0.046  Sum_probs=95.3

Q ss_pred             cEEEEECCCCeeEEEeecCC----CceEEEEEeeCCC--EEEEEe-----------CCCcEEEEEccccceeeEeeCCCC
Q 038577          372 KVKVWTVSSGFCFVTFTEHT----NAVTALHFMANNH--SLLSAS-----------LDGTVRAWDLFRYRNFRTFTTPSS  434 (860)
Q Consensus       372 ~i~iwd~~~~~~~~~~~~~~----~~v~~i~~~~~~~--~l~s~~-----------~dg~i~~wd~~~~~~~~~~~~~~~  434 (860)
                      .|+++|..+++.+..+.-..    -.+.++.|+....  ++++++           .+|.++.|++-.....-.+.....
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            47777777666555443211    1345555554332  222222           234566666644333222222222


Q ss_pred             CcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec--CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcc-
Q 038577          435 RQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS--GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKG-  511 (860)
Q Consensus       435 ~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~-  511 (860)
                      ..-.-.++.|-..++++|-.+  .+++||+...++++...  .-...|+.+.+  .+..++.|...-.+.++..+.... 
T Consensus       934 ~~~~v~Ai~~f~~~~LagvG~--~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~ 1009 (1205)
T KOG1898|consen  934 IPGPVGAICPFQGRVLAGVGR--FLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQ 1009 (1205)
T ss_pred             CCccceEEeccCCEEEEeccc--EEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCe
Confidence            223345666766677777655  89999998877765433  22456777776  567788887655566555443322 


Q ss_pred             eeEEc--ccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCC
Q 038577          512 SVESF--PHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPL  549 (860)
Q Consensus       512 ~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  549 (860)
                      ...+.  ..+..|+++.+- |...+|.++.=|.+.+-.+.
T Consensus      1010 l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1010 LIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred             EEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence            33333  234456666555 55568888777777766553

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.54  E-value=0.022  Score=55.58  Aligned_cols=146  Identities=16%  Similarity=0.144  Sum_probs=92.5

Q ss_pred             cCCcEEEe-CCCEEEeee--CC--eEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEE-cccCeEE
Q 038577           14 RGGNAVLS-QNTKLISPV--GN--RVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFIN-LHCHVVL   87 (860)
Q Consensus        14 ~~~~~~~s-dg~~l~~~~--~~--~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd-~~~~~~~   87 (860)
                      ...+.++| ||+.+|+..  ++  .+.++........ ..  ....++...|+++|...++...+....++. ..++...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~-~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRP-VL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCccee-ec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            45578999 999998866  43  4666654333322 22  223789999999998887777666667764 3333322


Q ss_pred             -EEee---cCCceeEEEECCCCCEEEEEe----CCeEEEEeCCCCCcc--cceeEEEEEeeccCCCeEEEEEcCCCCeEE
Q 038577           88 -HRVR---FKYPVNAILFSPNGKYIAVGT----GKLVQIWRSPGFKKE--VFAFELIRTLADCNDKVTALNWSPDSNYLL  157 (860)
Q Consensus        88 -~~~~---~~~~v~~~~fspdg~~la~~~----~~~i~iwd~~~~~~~--~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~  157 (860)
                       ....   ....|+++++||||..+|...    ++.|.|=-+......  ................+..++|.+++.+++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence             2222   222899999999999999884    678887655432211  000111222223456789999999998777


Q ss_pred             EeecC
Q 038577          158 VGSKD  162 (860)
Q Consensus       158 s~~~d  162 (860)
                      .+...
T Consensus       182 ~~~~~  186 (253)
T PF10647_consen  182 LGRSA  186 (253)
T ss_pred             EeCCC
Confidence            66543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=0.00042  Score=71.56  Aligned_cols=91  Identities=21%  Similarity=0.289  Sum_probs=74.6

Q ss_pred             cCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee-cCCcee-EEEECCCCCEEEEE-eCCeEEEEeCCCCCcccc
Q 038577           53 SNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-FKYPVN-AILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVF  129 (860)
Q Consensus        53 ~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~-~~~~v~-~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~  129 (860)
                      ..|.-+.|+|.-.++|++..+|.+.+..+. .+.+..++ +..+++ +++|.|||++||+| .||+|++.|+.++..   
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~---   96 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR---   96 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc---
Confidence            467889999999999999999999999988 78888888 777788 99999999999999 899999999998864   


Q ss_pred             eeEEEEEeeccCCCeEEEEEc
Q 038577          130 AFELIRTLADCNDKVTALNWS  150 (860)
Q Consensus       130 ~~~~~~~~~~h~~~v~~l~~s  150 (860)
                         +......-...|.++-|+
T Consensus        97 ---l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   97 ---LVSFLFSVETDISKGIWD  114 (665)
T ss_pred             ---eeccccccccchheeecc
Confidence               222222334556666665

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.49  E-value=0.1  Score=49.69  Aligned_cols=196  Identities=16%  Similarity=0.145  Sum_probs=124.3

Q ss_pred             eEEEEEeeCCCEEEEEeCCC--cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEE
Q 038577          394 VTALHFMANNHSLLSASLDG--TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLD  471 (860)
Q Consensus       394 v~~i~~~~~~~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~  471 (860)
                      ...+.|..++..+-+.|.-|  .|+.+|+.+++..+....+...---.++..  +..+..-+...+...+||..+.+.+.
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~  124 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIG  124 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEE
Confidence            45777878888888888777  699999999998888887776555555555  33455555555599999999999888


Q ss_pred             EecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcc--c---CCCeEEEEEeeCCCEEEEEeCCCeEEEE
Q 038577          472 ILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFP--H---THDVLTVVYRPDGRQLACSTLDGQIHFW  546 (860)
Q Consensus       472 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~---~~~v~~~~~s~~~~~l~~~~~dg~i~iw  546 (860)
                      ++. ..+.=..++  .|++.|+.......++++|..+.+....+..  .   -..++-+.|- +|...|=.=....|...
T Consensus       125 ~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I  200 (264)
T PF05096_consen  125 TFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI  200 (264)
T ss_dssp             EEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred             EEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence            876 345666777  4677777777777899999887765444332  1   2245667776 77777777677789999


Q ss_pred             eCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEec
Q 038577          547 DPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGG  600 (860)
Q Consensus       547 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~  600 (860)
                      |..+|+....+....-....     ...........-.+.+++.|..+.|...|
T Consensus       201 dp~tG~V~~~iDls~L~~~~-----~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  201 DPETGKVVGWIDLSGLRPEV-----GRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             ETTT-BEEEEEE-HHHHHHH-----TSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             eCCCCeEEEEEEhhHhhhcc-----cccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            99999999988654321000     00000011134589999998776554443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.49  E-value=4.5e-05  Score=78.38  Aligned_cols=195  Identities=15%  Similarity=0.254  Sum_probs=125.0

Q ss_pred             CeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCee--EEEeecCCCceEEEEEeeC-CCEEEEEe----CCCcEEEEEcc
Q 038577          351 DVNCLAYSPD--SQLLATGADDNKVKVWTVSSGFC--FVTFTEHTNAVTALHFMAN-NHSLLSAS----LDGTVRAWDLF  421 (860)
Q Consensus       351 ~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~i~~~~~-~~~l~s~~----~dg~i~~wd~~  421 (860)
                      .+.|+++.-+  ...+++|..+|.|.+-..+...-  .....++....++++|++- ...|++|-    .|..+.+||+.
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~  137 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN  137 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence            3566665443  34788899999999887764322  2334567788999999884 45555552    35579999998


Q ss_pred             cc--cee--eEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCc-eEEEecCcccCeEEEEEcC-CCCEEEEE
Q 038577          422 RY--RNF--RTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGR-LLDILSGHEGPVHGLVFSP-TNATLASS  495 (860)
Q Consensus       422 ~~--~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~-~~~~~~~h~~~v~~l~~s~-~~~~l~s~  495 (860)
                      +.  .+.  ..+.........++++..+.+.+.+|.... .+.++|++..- ....+  ....+..+...| .+.++++-
T Consensus       138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr-~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~  214 (783)
T KOG1008|consen  138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSR-SVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN  214 (783)
T ss_pred             cccCCCccccccccccccCccccccccCcchhhcccccc-hhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence            76  221  122222223345788888888888888877 89999987321 11111  234566788888 77788876


Q ss_pred             eCCCcEEEEE-ccCCcceeEEccc-----CCCeEEEEEeeCCC-EEEEEe-CCCeEEEEeCC
Q 038577          496 SWDKTVRLWN-VFEGKGSVESFPH-----THDVLTVVYRPDGR-QLACST-LDGQIHFWDPL  549 (860)
Q Consensus       496 ~~dg~i~iwd-~~~~~~~~~~~~~-----~~~v~~~~~s~~~~-~l~~~~-~dg~i~iwd~~  549 (860)
                      . ||.|.+|| ...-+.......+     ...+..++|.|-.. .+++.. ..++|+.||+.
T Consensus       215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            6 99999999 3333322222222     23489999999432 444444 45779999975

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=97.47  E-value=0.18  Score=52.26  Aligned_cols=295  Identities=10%  Similarity=0.081  Sum_probs=151.2

Q ss_pred             CCCEEEEEcCCCcEEEEEcccCe-----EEEEeecCCceeEEEECC-----CCCEEEEEeCCeEEEEeCCCCCcc---cc
Q 038577           63 DGTFLLTVDENQRCHFINLHCHV-----VLHRVRFKYPVNAILFSP-----NGKYIAVGTGKLVQIWRSPGFKKE---VF  129 (860)
Q Consensus        63 dg~~la~~~~d~~i~vwd~~~~~-----~~~~~~~~~~v~~~~fsp-----dg~~la~~~~~~i~iwd~~~~~~~---~~  129 (860)
                      +...|++|+..|.++|++...+.     .+-+.+.+.||..++.-+     +...||+-....+.||.+......   ..
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence            34689999999999999876433     455566788998887643     456888889999999998432211   00


Q ss_pred             eeEEEEEeeccC--CCeEEEEEcC----C-CCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCC
Q 038577          130 AFELIRTLADCN--DKVTALNWSP----D-SNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKK  202 (860)
Q Consensus       130 ~~~~~~~~~~h~--~~v~~l~~s~----d-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~  202 (860)
                      ... +..+..|.  .....++.-|    . -.++.+-+.||.+.+++-+..      .-...+.+ ---.-.+.|.+...
T Consensus       116 ~~~-L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~------~f~~~lp~-~llPgPl~Y~~~tD  187 (418)
T PF14727_consen  116 QYQ-LELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF------AFSRFLPD-FLLPGPLCYCPRTD  187 (418)
T ss_pred             EEE-EEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE------EEEEEcCC-CCCCcCeEEeecCC
Confidence            111 12222332  1222333322    2 256777899999999998765      22222222 22223467777777


Q ss_pred             CCccceEEEEcCCccEEEeeecCCCCCCccccCCCC-CCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEE
Q 038577          203 TDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSE-PPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVV  281 (860)
Q Consensus       203 ~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  281 (860)
                           .+++++.+..+..|....-............ .........-...|.+.-...    --.+..+.++.....+++
T Consensus       188 -----sfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~----~l~i~v~~~~~~~~~Ivv  258 (418)
T PF14727_consen  188 -----SFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQ----ALDIQVVRFSSSESDIVV  258 (418)
T ss_pred             -----EEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCce----eEEEEEEEcCCCCceEEE
Confidence                 8999999999999876542211110000000 000001112223555432211    111222333222222332


Q ss_pred             EEcCCeEEEEECCCceeEEEEeecCceeEEEEEee----CC--C-EEEEEEccCCcEEEEEccCceEEEEecCcccCeEE
Q 038577          282 GFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNE----LG--N-WLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNC  354 (860)
Q Consensus       282 ~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~----~~--~-~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~  354 (860)
                      - ....+.+.+. +|......+....+.....+..    ++  + .+++++. ++.+.||.-.+-....  +....+| +
T Consensus       259 L-ger~Lf~l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~-t~~LlVy~d~~L~WsA--~l~~~PV-a  332 (418)
T PF14727_consen  259 L-GERSLFCLKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTH-TGTLLVYEDTTLVWSA--QLPHVPV-A  332 (418)
T ss_pred             E-ecceEEEEcC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEec-CCeEEEEeCCeEEEec--CCCCCCE-E
Confidence            2 2344555554 4444444444333333333322    22  2 2444444 4899988643332222  2222222 3


Q ss_pred             EE---EcCCCCEEEEEeCCCcEEEEECCC
Q 038577          355 LA---YSPDSQLLATGADDNKVKVWTVSS  380 (860)
Q Consensus       355 ~~---~s~~~~~l~~~~~dg~i~iwd~~~  380 (860)
                      +.   |..-...|++-+.+|.+.+-=+.+
T Consensus       333 l~v~~~~~~~G~IV~Ls~~G~L~v~YLGT  361 (418)
T PF14727_consen  333 LSVANFNGLKGLIVSLSDEGQLSVSYLGT  361 (418)
T ss_pred             EEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence            33   233344777778888887765544

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.46  E-value=0.093  Score=51.20  Aligned_cols=151  Identities=19%  Similarity=0.093  Sum_probs=91.5

Q ss_pred             CeeEEEEcCCCCEEEEEc---CCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEE-eCCeEEEEe-CCCCCccc
Q 038577           54 NICRIAVSPDGTFLLTVD---ENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG-TGKLVQIWR-SPGFKKEV  128 (860)
Q Consensus        54 ~v~~va~spdg~~la~~~---~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~-~~~~i~iwd-~~~~~~~~  128 (860)
                      .+.+.++|+||+.+|...   ....+.++.  .+...........+....|++++...++. .+....++. ..++... 
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~-  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE-  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce-
Confidence            789999999999888765   234455554  33333333244578899999998877776 445555553 3333321 


Q ss_pred             ceeEEEEEeeccCCCeEEEEEcCCCCeEEEee---cCCeEEEEeecccccC---cccccceEeecCCCcEEEEEEccCCC
Q 038577          129 FAFELIRTLADCNDKVTALNWSPDSNYLLVGS---KDLAVRLFYVKEKLKG---IHTNKPFLLLGHRDSVVGCFFSVDKK  202 (860)
Q Consensus       129 ~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~---~dg~v~vwd~~~~~~~---~~~~~~~~~~~h~~~i~~~~~~~~~~  202 (860)
                       +  .......-.+.|..+++||||.++|...   .++.|.+=-+.....+   ...............+..+.|.+++.
T Consensus       102 -~--~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~  178 (253)
T PF10647_consen  102 -P--VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST  178 (253)
T ss_pred             -e--EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence             0  1111111122899999999999888765   3577777766544222   01111122223457889999999987


Q ss_pred             CCccceEEEEcCC
Q 038577          203 TDKVNRIYTIARD  215 (860)
Q Consensus       203 ~~~~~~l~s~~~d  215 (860)
                           .++.+...
T Consensus       179 -----L~V~~~~~  186 (253)
T PF10647_consen  179 -----LVVLGRSA  186 (253)
T ss_pred             -----EEEEeCCC
Confidence                 55555443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.37  E-value=0.26  Score=51.66  Aligned_cols=163  Identities=13%  Similarity=0.160  Sum_probs=99.2

Q ss_pred             CCeEEEEEcCCCCeEE-Eee--cCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccE
Q 038577          142 DKVTALNWSPDSNYLL-VGS--KDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYM  218 (860)
Q Consensus       142 ~~v~~l~~s~d~~~l~-s~~--~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i  218 (860)
                      .++..++|. ||+.++ +.-  .+|.+++             -.....|.-..|.++.|.|-+.. ....+++......|
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kf-------------Gds~viGqFEhV~GlsW~P~~~~-~~paLLAVQHkkhV   84 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKF-------------GDSKVIGQFEHVHGLSWAPPCTA-DTPALLAVQHKKHV   84 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCcccc-------------CCccEeeccceeeeeeecCcccC-CCCceEEEeccceE
Confidence            468899997 565444 321  2233322             22334455567889999987542 22367777888999


Q ss_pred             EEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecccc-CCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCce
Q 038577          219 FSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFS-QAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFV  297 (860)
Q Consensus       219 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~  297 (860)
                      .+|.+.......                   ..|-........ ..+---..+.|+|....|++-+....-.++++....
T Consensus        85 tVWqL~~s~~e~-------------------~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~  145 (671)
T PF15390_consen   85 TVWQLCPSTTER-------------------NKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDS  145 (671)
T ss_pred             EEEEeccCcccc-------------------ccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCC
Confidence            999987432200                   122211111110 111123467899999999888877766667665333


Q ss_pred             eEEEE-eecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccC
Q 038577          298 CIHLL-SISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRS  338 (860)
Q Consensus       298 ~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~  338 (860)
                      ..... -...+.|.|.+|.+||+.|+++-+..=.-++||-..
T Consensus       146 srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  146 SRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             ceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            22222 245578999999999999999887656677888544

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.35  E-value=0.082  Score=50.22  Aligned_cols=170  Identities=14%  Similarity=0.173  Sum_probs=114.0

Q ss_pred             CCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeec--CCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCc
Q 038577           50 ESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRF--KYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKK  126 (860)
Q Consensus        50 ~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~--~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~  126 (860)
                      |-...+.+++|+|+.+.|.+....+.-.||=-.+|+.+++++.  -.....|.+..+|+++++- .++.+.++.+.....
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~  162 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT  162 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence            5566699999999999999988888888888889999999983  3345678888888888777 778888887776532


Q ss_pred             ccceeEEEEEee--cc-CCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCC-------CcEEEEE
Q 038577          127 EVFAFELIRTLA--DC-NDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHR-------DSVVGCF  196 (860)
Q Consensus       127 ~~~~~~~~~~~~--~h-~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~-------~~i~~~~  196 (860)
                      ..........+.  .+ ....-.++|+|....|..+-+-.-+.|+.+......   ........+.       ..+.++.
T Consensus       163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~---l~~~~~~~~~~~~~~f~~DvSgl~  239 (316)
T COG3204         163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS---LSVHASLDPTADRDLFVLDVSGLE  239 (316)
T ss_pred             EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc---cccccccCcccccceEeeccccce
Confidence            221111111111  22 556789999999998988877777888877755211   1111112222       2356677


Q ss_pred             EccCCCCCccceEEEEcCCccEEEeeecCC
Q 038577          197 FSVDKKTDKVNRIYTIARDCYMFSWGFSGN  226 (860)
Q Consensus       197 ~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~  226 (860)
                      |.+....    .++-+.+++.+.-.+....
T Consensus       240 ~~~~~~~----LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         240 FNAITNS----LLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             ecCCCCc----EEEEecCCceEEEEecCCC
Confidence            7765442    5666666677776766653

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.26  E-value=0.24  Score=49.05  Aligned_cols=277  Identities=10%  Similarity=0.058  Sum_probs=127.6

Q ss_pred             CCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCce
Q 038577          188 HRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKV  267 (860)
Q Consensus       188 h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  267 (860)
                      -...+..+.|..+..     -+++ +..+.|  +....+-                      ..|...............
T Consensus        15 t~~~l~dV~F~d~~~-----G~~V-G~~g~i--l~T~DGG----------------------~tW~~~~~~~~~~~~~~l   64 (302)
T PF14870_consen   15 TDKPLLDVAFVDPNH-----GWAV-GAYGTI--LKTTDGG----------------------KTWQPVSLDLDNPFDYHL   64 (302)
T ss_dssp             -SS-EEEEEESSSS------EEEE-ETTTEE--EEESSTT----------------------SS-EE-----S-----EE
T ss_pred             CCCceEEEEEecCCE-----EEEE-ecCCEE--EEECCCC----------------------ccccccccCCCccceeeE
Confidence            345788999985444     4444 445543  3333322                      256554422221222346


Q ss_pred             EEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEee---cCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEE
Q 038577          268 TACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSI---SREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILK  344 (860)
Q Consensus       268 ~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~  344 (860)
                      .++.|..+ +.+++ +..| +.+...+.++.-..+..   -......+....++...++ +.. |.|+.-.=....-...
T Consensus        65 ~~I~f~~~-~g~iv-G~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~-~~~-G~iy~T~DgG~tW~~~  139 (302)
T PF14870_consen   65 NSISFDGN-EGWIV-GEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELA-GDR-GAIYRTTDGGKTWQAV  139 (302)
T ss_dssp             EEEEEETT-EEEEE-EETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEE-ETT---EEEESSTTSSEEEE
T ss_pred             EEEEecCC-ceEEE-cCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEE-cCC-CcEEEeCCCCCCeeEc
Confidence            67777543 34444 4455 34444444443333321   1223334444444433333 332 5443322112223333


Q ss_pred             ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEE-cccc
Q 038577          345 QQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWD-LFRY  423 (860)
Q Consensus       345 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd-~~~~  423 (860)
                      .....+.+..+.-+++|++++++.......-||.....-...-......|..|.|.|++...+ ....|.+++=+ ....
T Consensus       140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~~~  218 (302)
T PF14870_consen  140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDPDDG  218 (302)
T ss_dssp             E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-TTEE
T ss_pred             ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEE-EeCCcEEEEccCCCCc
Confidence            344556788899999999998887755566787543222223333568899999999986655 44888888876 2222


Q ss_pred             ceeeE--eeC-CCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec---CcccCeEEEEEcCCCCEEEEEeC
Q 038577          424 RNFRT--FTT-PSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS---GHEGPVHGLVFSPTNATLASSSW  497 (860)
Q Consensus       424 ~~~~~--~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~---~h~~~v~~l~~s~~~~~l~s~~~  497 (860)
                      .....  .+. .....+..+++.+++...++|+...   .+.....|+.=+..+   .-...+..+.|.++.+-++. +.
T Consensus       219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~---l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~  294 (302)
T PF14870_consen  219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT---LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQ  294 (302)
T ss_dssp             EEE---B-TTSS--S-EEEEEESSSS-EEEEESTT----EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--S
T ss_pred             cccccccCCcccCceeeEEEEecCCCCEEEEeCCcc---EEEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CC
Confidence            22222  111 2233478899999988888776542   344555555444332   23456888888866555554 46


Q ss_pred             CCcEEEE
Q 038577          498 DKTVRLW  504 (860)
Q Consensus       498 dg~i~iw  504 (860)
                      +|.+--|
T Consensus       295 ~G~ll~~  301 (302)
T PF14870_consen  295 DGVLLRY  301 (302)
T ss_dssp             TTEEEEE
T ss_pred             CcEEEEe
Confidence            7876554

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.23  E-value=0.032  Score=44.74  Aligned_cols=100  Identities=14%  Similarity=0.215  Sum_probs=69.8

Q ss_pred             eeEEEEcC---CC-CEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccce
Q 038577           55 ICRIAVSP---DG-TFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFA  130 (860)
Q Consensus        55 v~~va~sp---dg-~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~  130 (860)
                      |+++++..   || +.|++|+.|..|++|+  ..+.+..+.....|++++-...+++.....+|+|-+|+-...      
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R------   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQR------   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcce------
Confidence            66777764   33 5789999999999997  457888888889999999888765544448899999876432      


Q ss_pred             eEEEEEeeccCCCeEEEEEcC---CC-CeEEEeecCCeEE
Q 038577          131 FELIRTLADCNDKVTALNWSP---DS-NYLLVGSKDLAVR  166 (860)
Q Consensus       131 ~~~~~~~~~h~~~v~~l~~s~---d~-~~l~s~~~dg~v~  166 (860)
                         +-+.+. +..+.++++..   || .-|++|-.+|.|-
T Consensus        74 ---lWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   74 ---LWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ---eeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence               122222 22356665543   33 4688888888764

>PHA02713 hypothetical protein; Provisional

Probab=97.22  E-value=0.026  Score=62.22  Aligned_cols=219  Identities=10%  Similarity=0.056  Sum_probs=108.2

Q ss_pred             cEEEEEccCceEEEEecCcccC-eEEEEEcCCCCEEEEEeCC------CcEEEEECCCCeeEE--EeecCCCceEEEEEe
Q 038577          330 QLLVWEWRSESYILKQQGHYFD-VNCLAYSPDSQLLATGADD------NKVKVWTVSSGFCFV--TFTEHTNAVTALHFM  400 (860)
Q Consensus       330 ~i~v~d~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~i~~~  400 (860)
                      .+..||..+++......-.... -.+++. -++..++.|+.+      ..+..||..++.-..  .+....... ++ ..
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~-~~  349 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SL-AV  349 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eE-EE
Confidence            4566777666543221111111 112222 256677777753      347788877654221  111111111 22 22


Q ss_pred             eCCCEEEEEeCCC-----cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC-------------------
Q 038577          401 ANNHSLLSASLDG-----TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS-------------------  456 (860)
Q Consensus       401 ~~~~~l~s~~~dg-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------  456 (860)
                      -+++..+.||.++     .+..||..+.+=...-..+....-.++ ..-+|+..++|+.++                   
T Consensus       350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~-~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGM-CVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccE-EEECCEEEEEeCCCcccccccccccccccccccc
Confidence            3667778888764     377888876532211111211111112 223577777776542                   


Q ss_pred             ---CeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCC------cEEEEEccC-Ccce--eEEcccCCCeEE
Q 038577          457 ---FEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDK------TVRLWNVFE-GKGS--VESFPHTHDVLT  524 (860)
Q Consensus       457 ---~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg------~i~iwd~~~-~~~~--~~~~~~~~~v~~  524 (860)
                         ..+..||..+.+....-.-.......-+..-+++..+.|+.++      .+..||..+ .+-.  ............
T Consensus       429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~  508 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT  508 (557)
T ss_pred             cccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee
Confidence               2578888887654322211111111112223677777777542      367888876 3311  111111112222


Q ss_pred             EEEeeCCCEEEEEeCCC--eEEEEeCCCCcee
Q 038577          525 VVYRPDGRQLACSTLDG--QIHFWDPLNGELM  554 (860)
Q Consensus       525 ~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~  554 (860)
                      +++  +|++.++|+.+|  .+..||+.+.+-.
T Consensus       509 ~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        509 ILH--DNTIMMLHCYESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             EEE--CCEEEEEeeecceeehhhcCccccccc
Confidence            222  788889999888  6788888776543

>PRK10115 protease 2; Provisional

Probab=97.21  E-value=0.63  Score=52.94  Aligned_cols=240  Identities=10%  Similarity=0.076  Sum_probs=127.6

Q ss_pred             eeEEEEEeeCCCEEEEEEccCC----cEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCC------CcEEEEE
Q 038577          308 KITTAVFNELGNWLVFGCAKLG----QLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADD------NKVKVWT  377 (860)
Q Consensus       308 ~i~~~~~s~~~~~l~~~~~~~g----~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~iwd  377 (860)
                      .+..+.++|||++++.+...+|    .+++.|+.++..+.......  -..++|++|++.|+....+      ..|+.++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            5677889999999999876654    58888998875332221111  1468999999877665432      3677888


Q ss_pred             CCCC--eeEEEeecCCCceE-EEEEeeCCCEEEEEeC---CCcEEEEEcc--ccceeeEeeCCCCCcEEEEEECCCCCEE
Q 038577          378 VSSG--FCFVTFTEHTNAVT-ALHFMANNHSLLSASL---DGTVRAWDLF--RYRNFRTFTTPSSRQFVSLASDQSGEVI  449 (860)
Q Consensus       378 ~~~~--~~~~~~~~~~~~v~-~i~~~~~~~~l~s~~~---dg~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l  449 (860)
                      +.++  +....+........ .+..+.++++++..+.   ++.+.+++..  ++.....+....... ..+. ...+.+.
T Consensus       206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~ly  283 (686)
T PRK10115        206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHE-YSLD-HYQHRFY  283 (686)
T ss_pred             CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCE-EEEE-eCCCEEE
Confidence            8877  33334443333333 3333447776664433   3568888843  333222233333222 2222 2233333


Q ss_pred             EEEecCC--CeEEEEECC-CCceEEEecCcc-cCeEEEEEcCCCCEEEEEeCCCcEEEEEccC-CcceeEEc-ccCCCeE
Q 038577          450 CAGTLDS--FEIFVWSMK-TGRLLDILSGHE-GPVHGLVFSPTNATLASSSWDKTVRLWNVFE-GKGSVESF-PHTHDVL  523 (860)
Q Consensus       450 ~~~~~~~--~~i~v~d~~-~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~-~~~~~v~  523 (860)
                      +....+.  ..|...++. .++....+.... ..|..+.++ .+.++++...+|.-+++-+.. +.....+. .....+.
T Consensus       284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~  362 (686)
T PRK10115        284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAYVT  362 (686)
T ss_pred             EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCCceEe
Confidence            3333222  244444554 233333333323 367888887 345566666677666555432 22233222 2222333


Q ss_pred             EEEEe--eCCC-EEEEEe---CCCeEEEEeCCCCc
Q 038577          524 TVVYR--PDGR-QLACST---LDGQIHFWDPLNGE  552 (860)
Q Consensus       524 ~~~~s--~~~~-~l~~~~---~dg~i~iwd~~~~~  552 (860)
                      .+.++  +++. ++++.+   .-+.+..+|+.+++
T Consensus       363 ~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        363 WIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             eecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            34444  3443 444443   24678999988765

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.20  E-value=0.0019  Score=67.02  Aligned_cols=94  Identities=17%  Similarity=0.214  Sum_probs=78.9

Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceE-EEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q 038577          349 YFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVT-ALHFMANNHSLLSASLDGTVRAWDLFRYRNFR  427 (860)
Q Consensus       349 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~  427 (860)
                      ...+..+.|+|.-..+|++..+|.+.+..++ ...+.++..|..+++ +++|.|||+.++.|-.||+|++.|+.++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3457789999999999999999999999988 778888887888887 99999999999999999999999999988777


Q ss_pred             EeeCCCCCcEEEEEEC
Q 038577          428 TFTTPSSRQFVSLASD  443 (860)
Q Consensus       428 ~~~~~~~~~~~~~~~~  443 (860)
                      .........+.++.|+
T Consensus        99 ~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWD  114 (665)
T ss_pred             ccccccccchheeecc
Confidence            7544444455555555

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.17  E-value=0.04  Score=44.14  Aligned_cols=100  Identities=17%  Similarity=0.279  Sum_probs=67.7

Q ss_pred             eEEEEEcC---CC-CEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeE
Q 038577          480 VHGLVFSP---TN-ATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMY  555 (860)
Q Consensus       480 v~~l~~s~---~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  555 (860)
                      |+++++..   || ..|+.|+.|..||+|+-.  + +.........|++++-... ..++.+..+|+|-+|+-  ...+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e-~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--E-IVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--c-EEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence            56676654   32 579999999999999843  2 3444455667888877765 56888999999999975  44455


Q ss_pred             EEecccccCCCccccccccccccCCCCcEEEEEEec-C--C-CEEEEecCCCeEE
Q 038577          556 TIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSA-D--G-SYILAGGSSKYIC  606 (860)
Q Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-~--g-~~l~~~~~dg~v~  606 (860)
                      .++..+.                     ++++++.. +  | .-|++|-.+|.|-
T Consensus        76 RiKSK~~---------------------~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIKSKNQ---------------------VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeccCCC---------------------eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            5554443                     45555433 3  3 2688888888764

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.16  E-value=0.033  Score=56.94  Aligned_cols=145  Identities=14%  Similarity=0.131  Sum_probs=104.6

Q ss_pred             eCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCC-------EEEEEeCCCcEEEEECCC-Ce-eEEE
Q 038577          316 ELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQ-------LLATGADDNKVKVWTVSS-GF-CFVT  386 (860)
Q Consensus       316 ~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~~~~~dg~i~iwd~~~-~~-~~~~  386 (860)
                      .+.+.++..+.....++-.|++.|+.+..+..+.. |+-+.+.|+.+       .-+.|-.++.|.-||++- +. .+..
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~  421 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV  421 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence            44555666555557888999999999999887766 77778888653       234567788999999873 22 2222


Q ss_pred             eecC----CCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEE
Q 038577          387 FTEH----TNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVW  462 (860)
Q Consensus       387 ~~~~----~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~  462 (860)
                      ..+|    .....|.+-..+| ++++|+.+|.|++||- .++..++....-...|..+..+.+|+++++.+..  .+.+.
T Consensus       422 ~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t--yLlLi  497 (644)
T KOG2395|consen  422 VQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKT--YLLLI  497 (644)
T ss_pred             eeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEeccc--EEEEE
Confidence            2222    2345566666666 8999999999999997 6666666666667789999999999999887765  67776


Q ss_pred             ECC
Q 038577          463 SMK  465 (860)
Q Consensus       463 d~~  465 (860)
                      ++.
T Consensus       498 ~t~  500 (644)
T KOG2395|consen  498 DTL  500 (644)
T ss_pred             EEe
Confidence            654

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.15  E-value=0.037  Score=60.88  Aligned_cols=217  Identities=12%  Similarity=0.116  Sum_probs=114.5

Q ss_pred             CcEEEEEccCceEEEEecC-cccCeEEEEEcCCCCEEEEEeCC------CcEEEEECCCCeeEE--EeecCCCceEEEEE
Q 038577          329 GQLLVWEWRSESYILKQQG-HYFDVNCLAYSPDSQLLATGADD------NKVKVWTVSSGFCFV--TFTEHTNAVTALHF  399 (860)
Q Consensus       329 g~i~v~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~i~~  399 (860)
                      ..+..||..++.......- ....-.+++.. ++...++|+.|      .++..||..+++-..  .+........ ++ 
T Consensus       301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~-v~-  377 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFG-VA-  377 (571)
T ss_pred             ceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccce-eE-
Confidence            4577888887754433221 22223334443 55788888888      357788877655222  1111111111 11 


Q ss_pred             eeCCCEEEEEeCCCc-----EEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCC-----eEEEEECCCCce
Q 038577          400 MANNHSLLSASLDGT-----VRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSF-----EIFVWSMKTGRL  469 (860)
Q Consensus       400 ~~~~~~l~s~~~dg~-----i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~i~v~d~~~~~~  469 (860)
                      .-+|...++||.||.     +..||..+.+-...-.... .....-...-+|...++|+.++.     .+..||..+.+.
T Consensus       378 ~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W  456 (571)
T KOG4441|consen  378 VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW  456 (571)
T ss_pred             EECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce
Confidence            226778889998874     6667765543222111111 12223333456777777775542     578888887654


Q ss_pred             EEE--ecCcccCeEEEEEcCCCCEEEEEeCCCc-----EEEEEccCCcceeEEcccCCCeEEEEE-eeCCCEEEEEeCCC
Q 038577          470 LDI--LSGHEGPVHGLVFSPTNATLASSSWDKT-----VRLWNVFEGKGSVESFPHTHDVLTVVY-RPDGRQLACSTLDG  541 (860)
Q Consensus       470 ~~~--~~~h~~~v~~l~~s~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg  541 (860)
                      ...  +........ ++ .-++.+.+.|+.|+.     |..||..+.+-... ..-..+...+.. .-++...++|+.||
T Consensus       457 ~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-~~m~~~rs~~g~~~~~~~ly~vGG~~~  533 (571)
T KOG4441|consen  457 TLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV-APMTSPRSAVGVVVLGGKLYAVGGFDG  533 (571)
T ss_pred             eecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEc-ccCccccccccEEEECCEEEEEecccC
Confidence            322  221111122 22 226778888887763     77788877652222 111112222211 22667778888776


Q ss_pred             e-----EEEEeCCCCc
Q 038577          542 Q-----IHFWDPLNGE  552 (860)
Q Consensus       542 ~-----i~iwd~~~~~  552 (860)
                      .     |..||..+.+
T Consensus       534 ~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  534 NNNLNTVECYDPETDT  549 (571)
T ss_pred             ccccceeEEcCCCCCc
Confidence            3     7777766554

>smart00320 WD40 WD40 repeats

Probab=97.14  E-value=0.0012  Score=42.23  Aligned_cols=39  Identities=51%  Similarity=0.897  Sum_probs=34.1

Q ss_pred             CceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038577          467 GRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN  505 (860)
Q Consensus       467 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  505 (860)
                      ++....+..|...|.++.|++++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345566777899999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>smart00320 WD40 WD40 repeats

Probab=97.12  E-value=0.0016  Score=41.56  Aligned_cols=37  Identities=35%  Similarity=0.600  Sum_probs=33.4

Q ss_pred             EEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEe
Q 038577          133 LIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFY  169 (860)
Q Consensus       133 ~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd  169 (860)
                      +...+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4566778999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.09  E-value=0.2  Score=45.64  Aligned_cols=133  Identities=8%  Similarity=0.040  Sum_probs=86.4

Q ss_pred             eEEEEecCCCCEEEEEEc-C---------CeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEE-
Q 038577          267 VTACDYHRGLDMVVVGFS-N---------GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWE-  335 (860)
Q Consensus       267 v~~~~~~~~~~~l~~~~~-~---------g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d-  335 (860)
                      ...-..+|+|++.+ |.. +         |.++.|-..  ..+..+...-.--..++|+.+.+.+....+.+-.|.-|| 
T Consensus       111 ~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy  187 (310)
T KOG4499|consen  111 LNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY  187 (310)
T ss_pred             cccCccCCCCceee-eeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence            34445678888733 332 1         444444431  112222222233467889988888888877767787787 


Q ss_pred             -ccCce-----EEEEecC----cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeC
Q 038577          336 -WRSES-----YILKQQG----HYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMAN  402 (860)
Q Consensus       336 -~~~~~-----~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~  402 (860)
                       ..+|.     .+..++.    .....-.+++..+|++.++.-..++|...|..+|+.+.++.-....|++++|-..
T Consensus       188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence             44543     2332221    1112334566778888888888999999999999999999988999999999643

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.06  E-value=0.46  Score=48.62  Aligned_cols=108  Identities=19%  Similarity=0.223  Sum_probs=60.0

Q ss_pred             CeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeE---EEEee-----cCCceeEEEECCC----CCEEEEEe-C-------
Q 038577           54 NICRIAVSPDGTFLLTVDENQRCHFINLHCHVV---LHRVR-----FKYPVNAILFSPN----GKYIAVGT-G-------  113 (860)
Q Consensus        54 ~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~---~~~~~-----~~~~v~~~~fspd----g~~la~~~-~-------  113 (860)
                      ..++|+|.|||+++++ ...|.|.+++ ..+..   +..+.     .......++|+|+    +.+.++.. .       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            4679999999987665 5589999999 44443   33331     3456789999994    43333332 1       


Q ss_pred             -CeEEEEeCCCCCcccce-eEEEEEeec---cCCCeEEEEEcCCCCeEEEeecCC
Q 038577          114 -KLVQIWRSPGFKKEVFA-FELIRTLAD---CNDKVTALNWSPDSNYLLVGSKDL  163 (860)
Q Consensus       114 -~~i~iwd~~~~~~~~~~-~~~~~~~~~---h~~~v~~l~~s~d~~~l~s~~~dg  163 (860)
                       ..|.-|....+...... ..++..+..   ....-..|+|.|||.+.++.+..+
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~  135 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG  135 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence             24555555444222211 222333333   233456799999997766665544

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.05  E-value=0.00088  Score=60.39  Aligned_cols=107  Identities=17%  Similarity=0.282  Sum_probs=72.6

Q ss_pred             CCCEEEEEeCCCcEEEEEcccccee-eEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcc-cC
Q 038577          402 NNHSLLSASLDGTVRAWDLFRYRNF-RTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHE-GP  479 (860)
Q Consensus       402 ~~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~-~~  479 (860)
                      -+..+++|+.+|.|.+|...-.... ..+..........+....++.+.++++.++ .|+.|++...+.+.....|. .+
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg-~ir~~n~~p~k~~g~~g~h~~~~  147 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDG-RIRACNIKPNKVLGYVGQHNFES  147 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCC-ceeeeccccCceeeeeccccCCC
Confidence            3567999999999999987632211 111122222223344455667888899898 99999999999888887777 56


Q ss_pred             eEEEEEcCCCCEEEEE--eCCCcEEEEEccCC
Q 038577          480 VHGLVFSPTNATLASS--SWDKTVRLWNVFEG  509 (860)
Q Consensus       480 v~~l~~s~~~~~l~s~--~~dg~i~iwd~~~~  509 (860)
                      +.....+..++.++.+  |.|..++.|++..-
T Consensus       148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             cceeEEecCCceEEeeccccchhhhhcchhhh
Confidence            6666666666677766  67777777776543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.04  E-value=0.064  Score=59.04  Aligned_cols=231  Identities=12%  Similarity=0.116  Sum_probs=121.9

Q ss_pred             CCCCEEEEEeCCC------cEEEEECCCCeeEE--EeecCCCceEEEEEeeCCCEEEEEeCC-C-----cEEEEEccccc
Q 038577          359 PDSQLLATGADDN------KVKVWTVSSGFCFV--TFTEHTNAVTALHFMANNHSLLSASLD-G-----TVRAWDLFRYR  424 (860)
Q Consensus       359 ~~~~~l~~~~~dg------~i~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~s~~~d-g-----~i~~wd~~~~~  424 (860)
                      ..+..++.|+.++      .+..||..++.-..  .+. ....-.+++.. ++...++||.| |     .+..||..+.+
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~  360 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ  360 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence            3455677777763      57788887763322  222 22223344443 45678889888 3     46778877665


Q ss_pred             eeeEeeCCCCCcEEEEEECCCCCEEEEEecCCC----eEEEEECCCCceEEE--ecCcccCeEEEEEcCCCCEEEEEeCC
Q 038577          425 NFRTFTTPSSRQFVSLASDQSGEVICAGTLDSF----EIFVWSMKTGRLLDI--LSGHEGPVHGLVFSPTNATLASSSWD  498 (860)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~i~v~d~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~~~d  498 (860)
                      =.. ...-.......-...-+|...++|+.++.    .+..||..+.+....  +...........+  +|...++||.+
T Consensus       361 W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~  437 (571)
T KOG4441|consen  361 WTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGD  437 (571)
T ss_pred             eec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcC
Confidence            222 22111122222233346777888888752    578888876554322  2211112222222  68888888865


Q ss_pred             C------cEEEEEccCCcceeEEccc-CCCeEEEEEeeCCCEEEEEeCCCe-----EEEEeCCCCceeEEEecccccCCC
Q 038577          499 K------TVRLWNVFEGKGSVESFPH-THDVLTVVYRPDGRQLACSTLDGQ-----IHFWDPLNGELMYTIEGRRDISGG  566 (860)
Q Consensus       499 g------~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~  566 (860)
                      +      .+..||..++.-.....-. ...-..+ -.-++.+.++|+.|+.     |..||..+.+-...-.....    
T Consensus       438 ~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~----  512 (571)
T KOG4441|consen  438 GSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGV-AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP----  512 (571)
T ss_pred             CCccccceEEEEcCCCCceeecCCcccccccceE-EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccc----
Confidence            4      4678887766422111111 1111112 2237788888887763     77788877654433211111    


Q ss_pred             ccccccccccccCCCCcEEEEEEecCCCEEEEecCCC-----eEEEEECCCceE
Q 038577          567 RLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSK-----YICMYDVADQVL  615 (860)
Q Consensus       567 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg-----~v~vwd~~~~~~  615 (860)
                                      .-..-+..-+++..++|+.||     +|..||..+.+.
T Consensus       513 ----------------rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W  550 (571)
T KOG4441|consen  513 ----------------RSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTW  550 (571)
T ss_pred             ----------------cccccEEEECCEEEEEecccCccccceeEEcCCCCCce
Confidence                            011111223566777777765     566676666543

>PRK10115 protease 2; Provisional

Probab=97.01  E-value=0.96  Score=51.48  Aligned_cols=239  Identities=8%  Similarity=-0.042  Sum_probs=122.7

Q ss_pred             ceEEEEecCCCCEEEEEEcC-----CeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccC-----CcEEEEE
Q 038577          266 KVTACDYHRGLDMVVVGFSN-----GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKL-----GQLLVWE  335 (860)
Q Consensus       266 ~v~~~~~~~~~~~l~~~~~~-----g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~-----g~i~v~d  335 (860)
                      .+..+.++|++++|+.+...     -.+++.|+.++..+...-... . ..++|++|++.++.+..++     ..++.++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc-c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            46778899999998865443     468888988775332211111 1 4699999999888876542     3677788


Q ss_pred             ccCc--eEEEEecCcccCeE-EEEEcCCCCEEEEEeC---CCcEEEEECC--CCeeEEEeecCCCceEEEEEeeCCCEEE
Q 038577          336 WRSE--SYILKQQGHYFDVN-CLAYSPDSQLLATGAD---DNKVKVWTVS--SGFCFVTFTEHTNAVTALHFMANNHSLL  407 (860)
Q Consensus       336 ~~~~--~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~---dg~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~~~~l~  407 (860)
                      +.++  +....+........ ....+.++++++..+.   ++.+.+++..  ++.....+.........+. ...+..++
T Consensus       206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~  284 (686)
T PRK10115        206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYL  284 (686)
T ss_pred             CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEE
Confidence            8777  32223332222222 3334557877665444   3578888843  3332222222222222222 22233333


Q ss_pred             EEeCC---CcEEEEEccccceeeEeeCC-CCCcEEEEEECCCCCEEEEEecCCC--eEEEEECCCCceEEEec-CcccCe
Q 038577          408 SASLD---GTVRAWDLFRYRNFRTFTTP-SSRQFVSLASDQSGEVICAGTLDSF--EIFVWSMKTGRLLDILS-GHEGPV  480 (860)
Q Consensus       408 s~~~d---g~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~--~i~v~d~~~~~~~~~~~-~h~~~v  480 (860)
                      ....+   ..|...++........+..+ ....+..+.+.  ++.++....+++  .+++++..+++ +..+. .....+
T Consensus       285 ~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~~~-~~~l~~~~~~~~  361 (686)
T PRK10115        285 RSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQINRKTRE-VIGIAFDDPAYV  361 (686)
T ss_pred             EEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCCCc-eEEecCCCCceE
Confidence            22221   23444444422223344444 23466777776  445555444333  45555654333 33333 222223


Q ss_pred             EEEEEc--CCCC-EEEEEeC---CCcEEEEEccCCc
Q 038577          481 HGLVFS--PTNA-TLASSSW---DKTVRLWNVFEGK  510 (860)
Q Consensus       481 ~~l~~s--~~~~-~l~s~~~---dg~i~iwd~~~~~  510 (860)
                      ..+.++  +++. ++++.+.   -+.+..+|..+++
T Consensus       362 ~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        362 TWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             eeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            333444  3433 4444433   3678888887764

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.98  E-value=0.0012  Score=59.50  Aligned_cols=141  Identities=15%  Similarity=0.106  Sum_probs=77.9

Q ss_pred             EEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCC-CceEEEecCcccCeEE-
Q 038577          405 SLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT-GRLLDILSGHEGPVHG-  482 (860)
Q Consensus       405 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~-~~~~~~~~~h~~~v~~-  482 (860)
                      .+..-+.||.|+-++++..+....-.....   .....-.-+..+++|+.++ .|++|+... +.....+..-...|.+ 
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~---e~~~v~~~~~~~~vG~~dg-~v~~~n~n~~g~~~d~~~s~~e~i~~~  107 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFID---EGQRVVTASAKLMVGTSDG-AVYVFNWNLEGAHSDRVCSGEESIDLG  107 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhhh---cceeecccCceEEeecccc-eEEEecCCccchHHHhhhcccccceec
Confidence            345566788888887765432211111110   0122334456788898888 999998762 1211111111222322 


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccC-CCeEEEEEeeCCCEEEEE--eCCCeEEEEeCC
Q 038577          483 LVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHT-HDVLTVVYRPDGRQLACS--TLDGQIHFWDPL  549 (860)
Q Consensus       483 l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~--~~dg~i~iwd~~  549 (860)
                      +.--.++.+..+++.||.|+.|++...+.......|. .+......+..++.++++  +.|..++.|++.
T Consensus       108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            2222345678899999999999998887655555565 344444444444444444  445555555543

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.96  E-value=0.0072  Score=66.92  Aligned_cols=108  Identities=24%  Similarity=0.376  Sum_probs=78.3

Q ss_pred             EEEEEeeCCCEEEEEEccCCcEEEEEccCceE-EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEee
Q 038577          310 TTAVFNELGNWLVFGCAKLGQLLVWEWRSESY-ILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFT  388 (860)
Q Consensus       310 ~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  388 (860)
                      ..++..-.+.+++++++. |.+...|+...-. ...-..-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+.
T Consensus        91 ~v~s~a~~~~~ivi~Ts~-ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~  169 (1206)
T KOG2079|consen   91 GVISSAIVVVPIVIGTSH-GHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT  169 (1206)
T ss_pred             ceeeeeeeeeeEEEEcCc-hhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee
Confidence            333333445566666655 8888888766421 11112346789999999999999999999999999999999999998


Q ss_pred             cCCCceEEEEE---eeCCCEEEEEeCCCcEEEEEc
Q 038577          389 EHTNAVTALHF---MANNHSLLSASLDGTVRAWDL  420 (860)
Q Consensus       389 ~~~~~v~~i~~---~~~~~~l~s~~~dg~i~~wd~  420 (860)
                      .|..+.+++-+   ..++..++++...|.  +|.+
T Consensus       170 e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  170 EHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            88887776654   345556788877776  5554

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.91  E-value=0.41  Score=54.40  Aligned_cols=205  Identities=14%  Similarity=0.119  Sum_probs=121.8

Q ss_pred             CCEEEEEeCCCcEEEEEccccceeeEeeCCCCCc-------EEEEEE----------------CCCCCEEEEEecCCCeE
Q 038577          403 NHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQ-------FVSLAS----------------DQSGEVICAGTLDSFEI  459 (860)
Q Consensus       403 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~-------~~~~~~----------------~~~~~~l~~~~~~~~~i  459 (860)
                      +..++.++.++.|.-.|..+++.+..+.......       ...+++                ..++..++.++.|+ .+
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg-~L  272 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDA-RL  272 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCC-eE
Confidence            3466677777888888888888777765433211       111221                12445788888888 99


Q ss_pred             EEEECCCCceEEEecCcccCeE-------------EEEEcC--CCCEEEEEeC----------CCcEEEEEccCCcceeE
Q 038577          460 FVWSMKTGRLLDILSGHEGPVH-------------GLVFSP--TNATLASSSW----------DKTVRLWNVFEGKGSVE  514 (860)
Q Consensus       460 ~v~d~~~~~~~~~~~~h~~~v~-------------~l~~s~--~~~~l~s~~~----------dg~i~iwd~~~~~~~~~  514 (860)
                      .-.|.++|+.+..+. ..+.|.             .+.-+|  .+..++.++.          +|.|+-+|..+++..-.
T Consensus       273 iALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~  351 (764)
T TIGR03074       273 IALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA  351 (764)
T ss_pred             EEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence            999999999987764 222221             111222  1345555542          68899999999986655


Q ss_pred             Eccc---------CC--------Ce-EEEEEeeCCCEEEEEe------------------CCCeEEEEeCCCCceeEEEe
Q 038577          515 SFPH---------TH--------DV-LTVVYRPDGRQLACST------------------LDGQIHFWDPLNGELMYTIE  558 (860)
Q Consensus       515 ~~~~---------~~--------~v-~~~~~s~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~  558 (860)
                      +...         .+        .+ ...+++|+..+++.+.                  ..+.|.-.|++||+....++
T Consensus       352 ~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q  431 (764)
T TIGR03074       352 WDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQ  431 (764)
T ss_pred             EecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEec
Confidence            4310         00        11 2344555444444422                  13457777888888888776


Q ss_pred             c-ccccCCCccccccccccccCCCCcEEEEEEec-CCC---EEEEecCCCeEEEEECCCceEEEEEee
Q 038577          559 G-RRDISGGRLMTDRRSAANSSSGKCFTTLCYSA-DGS---YILAGGSSKYICMYDVADQVLLRRFQI  621 (860)
Q Consensus       559 ~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-~g~---~l~~~~~dg~v~vwd~~~~~~~~~~~~  621 (860)
                      . |++.=....            .....-+.+.. +|+   .++.++.+|.+.+.|-++|+.+...+.
T Consensus       432 ~~~hD~WD~D~------------~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e  487 (764)
T TIGR03074       432 TVHHDLWDMDV------------PAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE  487 (764)
T ss_pred             ccCCccccccc------------cCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence            5 433210000            00112222333 664   788999999999999999999876543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.90  E-value=0.13  Score=52.87  Aligned_cols=145  Identities=15%  Similarity=0.179  Sum_probs=102.3

Q ss_pred             CCCEEE-EEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCC--------EEEEEeCCeEEEEeCCCCCcccceeEE
Q 038577           63 DGTFLL-TVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGK--------YIAVGTGKLVQIWRSPGFKKEVFAFEL  133 (860)
Q Consensus        63 dg~~la-~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~--------~la~~~~~~i~iwd~~~~~~~~~~~~~  133 (860)
                      +..+|. ++.....++-.|++.|+.+...+....|+-+.+.|+.+        .|+...++.|.-||+.-....     .
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-----k  418 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-----K  418 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcc-----e
Confidence            334443 34445678888999999999999777799999999763        233338899999998744321     1


Q ss_pred             EEEeecc----CCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceE
Q 038577          134 IRTLADC----NDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRI  209 (860)
Q Consensus       134 ~~~~~~h----~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l  209 (860)
                      +..-.+|    .....|.+-..+| ++|+|+.+|.||+||--..      .....+++-..+|..+..+.+|+     .|
T Consensus       419 l~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~------~AKTAlPgLG~~I~hVdvtadGK-----wi  486 (644)
T KOG2395|consen  419 LAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGR------RAKTALPGLGDAIKHVDVTADGK-----WI  486 (644)
T ss_pred             eeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhh------hhhhcccccCCceeeEEeeccCc-----EE
Confidence            2222223    2335666666555 7999999999999998444      45677889999999999999998     66


Q ss_pred             EEEcCCccEEEeeecC
Q 038577          210 YTIARDCYMFSWGFSG  225 (860)
Q Consensus       210 ~s~~~dg~i~~w~~~~  225 (860)
                      +..+ +.++.+.++.-
T Consensus       487 l~Tc-~tyLlLi~t~~  501 (644)
T KOG2395|consen  487 LATC-KTYLLLIDTLI  501 (644)
T ss_pred             EEec-ccEEEEEEEec
Confidence            6555 55666666553

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.85  E-value=0.82  Score=48.17  Aligned_cols=118  Identities=15%  Similarity=0.237  Sum_probs=74.3

Q ss_pred             CCccCeeEEEEcCCC----CEEEEEcCCCcEEEEEcc-----cCeEEEE----eecCCc--eeEEEECCCCCEEEEEeCC
Q 038577           50 ESSSNICRIAVSPDG----TFLLTVDENQRCHFINLH-----CHVVLHR----VRFKYP--VNAILFSPNGKYIAVGTGK  114 (860)
Q Consensus        50 ~h~~~v~~va~spdg----~~la~~~~d~~i~vwd~~-----~~~~~~~----~~~~~~--v~~~~fspdg~~la~~~~~  114 (860)
                      |.-..|..++|+|-+    ..|........|.||.+.     +++.+..    ++...+  -..+.|+|....|++-...
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~  133 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR  133 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence            444568899999853    244445667899999875     2333322    211222  3578899999999998655


Q ss_pred             eEEE-EeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEee-cCCeEEEEeeccc
Q 038577          115 LVQI-WRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGS-KDLAVRLFYVKEK  173 (860)
Q Consensus       115 ~i~i-wd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~-~dg~v~vwd~~~~  173 (860)
                      .+.| +++......     ....+ .-.+.|.|.+|.+||++|+.+- ..=.-++||-...
T Consensus       134 dvSV~~sV~~d~sr-----VkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  134 DVSVLPSVHCDSSR-----VKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             ceeEeeeeeeCCce-----EEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            5544 444433210     22333 4567899999999999887763 3345677875543

>PHA02713 hypothetical protein; Provisional

Probab=96.80  E-value=0.084  Score=58.34  Aligned_cols=219  Identities=9%  Similarity=0.061  Sum_probs=108.3

Q ss_pred             eEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEcc-----CCcEEEEEccCceEEEEecCcccCeEEEEEcCCC
Q 038577          287 VFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK-----LGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDS  361 (860)
Q Consensus       287 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-----~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~  361 (860)
                      .+..||..+.+-...-.............-++...++|+..     ...+..||..++.......-....-......-+|
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g  352 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDD  352 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECC
Confidence            46677776654332212111111222233455555555532     1347788887775432211111111111222367


Q ss_pred             CEEEEEeCCC-----cEEEEECCCCeeEE--EeecCCCceEEEEEeeCCCEEEEEeCCC---------------------
Q 038577          362 QLLATGADDN-----KVKVWTVSSGFCFV--TFTEHTNAVTALHFMANNHSLLSASLDG---------------------  413 (860)
Q Consensus       362 ~~l~~~~~dg-----~i~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~s~~~dg---------------------  413 (860)
                      +..+.|+.++     .+..||..+..-..  .+.........+  .-+++..+.||.++                     
T Consensus       353 ~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~  430 (557)
T PHA02713        353 TIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHS  430 (557)
T ss_pred             EEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccc
Confidence            7778888754     47889987653221  111111111112  23677777777653                     


Q ss_pred             --cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC-----CeEEEEECCC-Cce--EEEecCcccCeEEE
Q 038577          414 --TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS-----FEIFVWSMKT-GRL--LDILSGHEGPVHGL  483 (860)
Q Consensus       414 --~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~i~v~d~~~-~~~--~~~~~~h~~~v~~l  483 (860)
                        .+..||..+.+=...-..+.. .....+..-+++..++|+.++     ..+..||..+ .+.  +..+..........
T Consensus       431 ~~~ve~YDP~td~W~~v~~m~~~-r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~  509 (557)
T PHA02713        431 SNKVIRYDTVNNIWETLPNFWTG-TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI  509 (557)
T ss_pred             cceEEEECCCCCeEeecCCCCcc-cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE
Confidence              366777765432211111111 111222233466666666532     1467899887 443  33343333333333


Q ss_pred             EEcCCCCEEEEEeCCC--cEEEEEccCCc
Q 038577          484 VFSPTNATLASSSWDK--TVRLWNVFEGK  510 (860)
Q Consensus       484 ~~s~~~~~l~s~~~dg--~i~iwd~~~~~  510 (860)
                      .+  +++..++|+.+|  .+..||..+.+
T Consensus       510 ~~--~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        510 LH--DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             EE--CCEEEEEeeecceeehhhcCccccc
Confidence            33  788899999888  67777777665

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.50  E-value=1  Score=44.73  Aligned_cols=278  Identities=12%  Similarity=0.109  Sum_probs=130.9

Q ss_pred             cCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeecc-CCCeEEEEEcCCCCeEEEeecCCeEEEEee
Q 038577           92 FKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADC-NDKVTALNWSPDSNYLLVGSKDLAVRLFYV  170 (860)
Q Consensus        92 ~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~  170 (860)
                      ...++.+|+|..+..-.|+|..+.|  +....+...+.+..  ...... .-...++.|..+ ..+++ +..+ +.+...
T Consensus        15 t~~~l~dV~F~d~~~G~~VG~~g~i--l~T~DGG~tW~~~~--~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g-~ll~T~   87 (302)
T PF14870_consen   15 TDKPLLDVAFVDPNHGWAVGAYGTI--LKTTDGGKTWQPVS--LDLDNPFDYHLNSISFDGN-EGWIV-GEPG-LLLHTT   87 (302)
T ss_dssp             -SS-EEEEEESSSS-EEEEETTTEE--EEESSTTSS-EE-------S-----EEEEEEEETT-EEEEE-EETT-EEEEES
T ss_pred             CCCceEEEEEecCCEEEEEecCCEE--EEECCCCccccccc--cCCCccceeeEEEEEecCC-ceEEE-cCCc-eEEEec
Confidence            4678999999977788888877654  44444333322211  011110 123567777643 34444 4444 333333


Q ss_pred             cccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceee
Q 038577          171 KEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVK  250 (860)
Q Consensus       171 ~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (860)
                      +.+..-   .....-..-.+....+....++.      ....+..|.|  |....+-                      +
T Consensus        88 DgG~tW---~~v~l~~~lpgs~~~i~~l~~~~------~~l~~~~G~i--y~T~DgG----------------------~  134 (302)
T PF14870_consen   88 DGGKTW---ERVPLSSKLPGSPFGITALGDGS------AELAGDRGAI--YRTTDGG----------------------K  134 (302)
T ss_dssp             STTSS----EE----TT-SS-EEEEEEEETTE------EEEEETT--E--EEESSTT----------------------S
T ss_pred             CCCCCc---EEeecCCCCCCCeeEEEEcCCCc------EEEEcCCCcE--EEeCCCC----------------------C
Confidence            333111   11111011123334444444443      3333444443  3333322                      2


Q ss_pred             eEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCc
Q 038577          251 KWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQ  330 (860)
Q Consensus       251 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~  330 (860)
                      .|.....    ...+.+..+..+++|.+++++.....+.-|+.....-...-+.....+..+.|.|++...+++  ..|.
T Consensus       135 tW~~~~~----~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~--~Gg~  208 (302)
T PF14870_consen  135 TWQAVVS----ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA--RGGQ  208 (302)
T ss_dssp             SEEEEE-----S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE--TTTE
T ss_pred             CeeEccc----CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe--CCcE
Confidence            6754432    334678889999999988888776666677764333333334456799999999998877755  3378


Q ss_pred             EEEEEccC-ceEEEE--ec--CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEee---cCCCceEEEEEeeC
Q 038577          331 LLVWEWRS-ESYILK--QQ--GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFT---EHTNAVTALHFMAN  402 (860)
Q Consensus       331 i~v~d~~~-~~~~~~--~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~i~~~~~  402 (860)
                      ++.=+... ...-..  ..  ...-.+..++|.+++...++|+. |.+ +...+.|+.-....   .-...+..+.|.++
T Consensus       209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~  286 (302)
T PF14870_consen  209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNP  286 (302)
T ss_dssp             EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEET
T ss_pred             EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCC
Confidence            88777222 222111  11  12234789999999887777665 444 34445555544433   23456888888766


Q ss_pred             CCEEEEEeCCCcEEEE
Q 038577          403 NHSLLSASLDGTVRAW  418 (860)
Q Consensus       403 ~~~l~s~~~dg~i~~w  418 (860)
                      . .-...+.+|.+--|
T Consensus       287 ~-~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  287 D-KGFVLGQDGVLLRY  301 (302)
T ss_dssp             T-EEEEE-STTEEEEE
T ss_pred             C-ceEEECCCcEEEEe
Confidence            5 44455577776544

>PRK13684 Ycf48-like protein; Provisional

Probab=96.49  E-value=1.2  Score=45.56  Aligned_cols=150  Identities=13%  Similarity=0.166  Sum_probs=86.0

Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCcEEEE-ECCCCeeEEEe-ecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcccccee
Q 038577          349 YFDVNCLAYSPDSQLLATGADDNKVKVW-TVSSGFCFVTF-TEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNF  426 (860)
Q Consensus       349 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw-d~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~  426 (860)
                      ...+.++.+.|++.+++++.. |.+..- + ..++.-... ..-...++++.+.++++.++. +..|.+.+=....+...
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCC-ceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCcc
Confidence            456888999999876666544 554432 2 222222222 233467889999998876555 45676643233444433


Q ss_pred             eEeeCC---CCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec---CcccCeEEEEEcCCCCEEEEEeCCCc
Q 038577          427 RTFTTP---SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS---GHEGPVHGLVFSPTNATLASSSWDKT  500 (860)
Q Consensus       427 ~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~---~h~~~v~~l~~s~~~~~l~s~~~dg~  500 (860)
                      .....+   ....+..+.+.+++..++++. ++ .+. .....|+.-....   .-......+.|..+++.+++ +..|.
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~-~G-~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~  324 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWAGGG-NG-TLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGV  324 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEEEcC-CC-eEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCce
Confidence            333322   223567888999888766654 44 343 3444444433332   22235778888777766554 55787


Q ss_pred             EEEEE
Q 038577          501 VRLWN  505 (860)
Q Consensus       501 i~iwd  505 (860)
                      |-.|+
T Consensus       325 il~~~  329 (334)
T PRK13684        325 LLRYV  329 (334)
T ss_pred             EEEec
Confidence            77765

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.46  E-value=0.86  Score=43.41  Aligned_cols=271  Identities=8%  Similarity=-0.037  Sum_probs=147.8

Q ss_pred             ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecC--cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---
Q 038577          307 EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQG--HYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSG---  381 (860)
Q Consensus       307 ~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---  381 (860)
                      +-+..+.++.  ++...+. .+.-+++.|+.+.........  ..+--.++..  .|++..++..|.-..+.|+.+.   
T Consensus        87 ~l~~Dv~vse--~yvyvad-~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP  161 (370)
T COG5276          87 DLFADVRVSE--EYVYVAD-WSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSP  161 (370)
T ss_pred             hhhheeEecc--cEEEEEc-CCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCc
Confidence            3455555553  3444443 347799999877544333211  1122334444  5778888886667778887654   


Q ss_pred             eeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCC-CcEEEEEECCCCCEEEEEecCCCeEE
Q 038577          382 FCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSS-RQFVSLASDQSGEVICAGTLDSFEIF  460 (860)
Q Consensus       382 ~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~i~  460 (860)
                      ............-+.++.+  |++-..+..|+-+.+-|+........+..-.. ..+.++..+++..+++....   -+.
T Consensus       162 ~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e---gvl  236 (370)
T COG5276         162 QLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE---GVL  236 (370)
T ss_pred             eeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc---ceE
Confidence            3344444445555677776  55777788899999999977554433332222 25677777777666665543   477


Q ss_pred             EEECCCCceEEEec--CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEE--cccCC-CeEEEEEeeCCCEEE
Q 038577          461 VWSMKTGRLLDILS--GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVES--FPHTH-DVLTVVYRPDGRQLA  535 (860)
Q Consensus       461 v~d~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~-~v~~~~~s~~~~~l~  535 (860)
                      +-|..+.+....+.  ....++.--.+.-.+++...+..+.-+.+-|+.+.......  ....+ ....+..  -+.++.
T Consensus       237 ivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~y~y  314 (370)
T COG5276         237 IVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNY  314 (370)
T ss_pred             EEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ecCeeE
Confidence            77777655333332  12222222123334666666677777777787655422111  11111 2223332  234455


Q ss_pred             EEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEEC
Q 038577          536 CSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV  610 (860)
Q Consensus       536 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~  610 (860)
                      .+..+ ...+-+....+......+...                    .+.+.+.+-+.+.+.+...++.+.+|+.
T Consensus       315 iadkn-~g~vV~~s~~s~m~~~~g~~t--------------------i~~s~~v~~~~q~~y~~d~~~gl~i~~~  368 (370)
T COG5276         315 IADKN-TGAVVDASPPSMMDKRPGRPT--------------------IGQSCDVSVDTQIIYSTDYNGGLSIIEY  368 (370)
T ss_pred             eccCC-ceEEEeCCChhhcccccCcce--------------------EeeecceEEEeeEEEEeecCCCEEEEEe
Confidence            55444 344444443333222222221                    2445555556677888888888888875

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.43  E-value=0.92  Score=43.38  Aligned_cols=194  Identities=10%  Similarity=0.073  Sum_probs=118.6

Q ss_pred             eeEEEEeecCce-eEEEEEeeCCCEEEEEEcc-CCcEEEEEccCceEEEEecCc-ccCeEEEEEcCCCCEEEEEeCCCcE
Q 038577          297 VCIHLLSISREK-ITTAVFNELGNWLVFGCAK-LGQLLVWEWRSESYILKQQGH-YFDVNCLAYSPDSQLLATGADDNKV  373 (860)
Q Consensus       297 ~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~~~-~g~i~v~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i  373 (860)
                      +.+..++..... ...+.|..+|..+-+++.. ...|+.+|+.+++......-. ..--..++.. +++.....-.++..
T Consensus        34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~  112 (264)
T PF05096_consen   34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTG  112 (264)
T ss_dssp             EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEE
T ss_pred             EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeE
Confidence            334445444433 4466776777766666544 237899999999876654322 1122344444 33455556778999


Q ss_pred             EEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCC----CcEEEEEECCCCCEE
Q 038577          374 KVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSS----RQFVSLASDQSGEVI  449 (860)
Q Consensus       374 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l  449 (860)
                      .+||..+.+.+.++.- .+.=+.++  .++..|+.......+.++|..+.+..+.+.....    ..+..+.+- +|...
T Consensus       113 f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~Iy  188 (264)
T PF05096_consen  113 FVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIY  188 (264)
T ss_dssp             EEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEE
T ss_pred             EEEccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEE
Confidence            9999999999888853 45667777  5677777777778999999988887776654422    134445554 45554


Q ss_pred             EEEecCCCeEEEEECCCCceEEEecC------------c---ccCeEEEEEcCCCCEEEEEe
Q 038577          450 CAGTLDSFEIFVWSMKTGRLLDILSG------------H---EGPVHGLVFSPTNATLASSS  496 (860)
Q Consensus       450 ~~~~~~~~~i~v~d~~~~~~~~~~~~------------h---~~~v~~l~~s~~~~~l~s~~  496 (860)
                      |-.-... .|...|..+|+.+..+.-            +   ..-.+.||+.|....+...+
T Consensus       189 ANVW~td-~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  189 ANVWQTD-RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEETTSS-EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEeCCCC-eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            4444444 899999999999877631            1   24578999998766655444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.37  E-value=0.36  Score=43.33  Aligned_cols=185  Identities=17%  Similarity=0.129  Sum_probs=111.8

Q ss_pred             CCCEEEEEeCCC--cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccC
Q 038577          402 NNHSLLSASLDG--TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGP  479 (860)
Q Consensus       402 ~~~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~  479 (860)
                      ++.++.+.|.-|  .|++||+.+++.+.....+. ..+..--...-|..+..-....+.-+.||.++-+.+..+. ..+.
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~-~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~Ge  132 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP-DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGE  132 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCC-ccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCc
Confidence            456666666544  69999999998877666552 2333333334455555555544488899998888776654 3444


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc--ccC---CCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcee
Q 038577          480 VHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF--PHT---HDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELM  554 (860)
Q Consensus       480 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~---~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  554 (860)
                      =+.++.  |++.|+.++...+++.-|..+-.......  ...   ..++-+.|- ||...|-.-.+..|...|.++|+.+
T Consensus       133 GWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~  209 (262)
T COG3823         133 GWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVV  209 (262)
T ss_pred             ceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEE
Confidence            455554  66667777666677777765544322222  112   223445554 7777777666777888899999988


Q ss_pred             EEEecccccCCCccccccccccccCCCCcEEEEEEecCC-CEEEEe
Q 038577          555 YTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADG-SYILAG  599 (860)
Q Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~~~  599 (860)
                      ..++...-...        ......+..-.+.+++.|++ +++++|
T Consensus       210 ~widlS~L~~~--------~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         210 AWIDLSGLLKE--------LNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EEEEccCCchh--------cCccccccccccceeecCcCCeEEEec
Confidence            88765432100        00011112346889999988 555655

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.29  E-value=0.018  Score=64.04  Aligned_cols=105  Identities=14%  Similarity=0.186  Sum_probs=78.8

Q ss_pred             CCCEEEEEeCCCcEEEEEccCCcc-eeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCC
Q 038577          488 TNATLASSSWDKTVRLWNVFEGKG-SVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGG  566 (860)
Q Consensus       488 ~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  566 (860)
                      .+.+++.|+..|.+-..|+...-. ...-....++|++++|+.+|+.++.|-.+|.|.+||...++.++.+..+...   
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap---  174 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP---  174 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCc---
Confidence            466788999999999988866421 1222246789999999999999999999999999999999998888765432   


Q ss_pred             ccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECC
Q 038577          567 RLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVA  611 (860)
Q Consensus       567 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~  611 (860)
                                    ...+-.+.+..++..++++...|.  +|.+.
T Consensus       175 --------------~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  175 --------------VTGVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             --------------cceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence                          123555556666677888877775  56543

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=96.25  E-value=0.39  Score=49.92  Aligned_cols=149  Identities=9%  Similarity=0.084  Sum_probs=91.3

Q ss_pred             cccCCc--EEEe-CCCEEEeeeCCeEEE-EECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCe--
Q 038577           12 PYRGGN--AVLS-QNTKLISPVGNRVSV-TDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHV--   85 (860)
Q Consensus        12 ~~~~~~--~~~s-dg~~l~~~~~~~i~v-~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~--   85 (860)
                      .|.++.  +..+ ||++++++..+.+.. ||--...-..........++++.+.++|..++++ ..|. .+|....++  
T Consensus       236 ~y~Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~-l~~S~d~G~~~  313 (398)
T PLN00033        236 YYTGTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGG-LYVSKGTGLTE  313 (398)
T ss_pred             eeccceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCce-EEEecCCCCcc
Confidence            444442  3445 999999998776443 4332211133333456678999999999977765 4454 445555554  


Q ss_pred             ---EEEEeec---CCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEe
Q 038577           86 ---VLHRVRF---KYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVG  159 (860)
Q Consensus        86 ---~~~~~~~---~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~  159 (860)
                         .......   ...+.++.|.+++..+++|..|.+.... ..++    .|+....-..-......+.|.++++.+++ 
T Consensus       314 ~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~----tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-  387 (398)
T PLN00033        314 EDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGK----SWKRDKGADNIAANLYSVKFFDDKKGFVL-  387 (398)
T ss_pred             cccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCc----ceeEccccCCCCcceeEEEEcCCCceEEE-
Confidence               2333332   2358999999999999999888776654 3333    22222222233456789999877665555 


Q ss_pred             ecCCeEEEE
Q 038577          160 SKDLAVRLF  168 (860)
Q Consensus       160 ~~dg~v~vw  168 (860)
                      +.+|.|.-|
T Consensus       388 G~~G~il~~  396 (398)
T PLN00033        388 GNDGVLLRY  396 (398)
T ss_pred             eCCcEEEEe
Confidence            466776554

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.23  E-value=0.073  Score=59.75  Aligned_cols=155  Identities=15%  Similarity=0.143  Sum_probs=102.9

Q ss_pred             eeCCCCCcEEEEEECCCCCEEEEEe-cCCCeEEEEECCCCceE-----EEecCc------ccCeEEEEEcCCCC-EEEEE
Q 038577          429 FTTPSSRQFVSLASDQSGEVICAGT-LDSFEIFVWSMKTGRLL-----DILSGH------EGPVHGLVFSPTNA-TLASS  495 (860)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~i~v~d~~~~~~~-----~~~~~h------~~~v~~l~~s~~~~-~l~s~  495 (860)
                      +..+....+..+...+|+...++.. .+|..|+.||+++-...     ..+..|      ..-..++.|.|.-. ..+.+
T Consensus        95 ~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~  174 (1405)
T KOG3630|consen   95 FKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVD  174 (1405)
T ss_pred             eeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhh
Confidence            3334445667777788877665543 33448999998754221     112212      23355677887643 35666


Q ss_pred             eCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccc
Q 038577          496 SWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSA  575 (860)
Q Consensus       496 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  575 (860)
                      ..|+.|++..+................++++|+|.|+.+++|-..|++.-|.. +++....+......            
T Consensus       175 l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~------------  241 (1405)
T KOG3630|consen  175 LSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVE------------  241 (1405)
T ss_pred             ccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcC------------
Confidence            77999999887665555555567788999999999999999999999998875 44444444433221            


Q ss_pred             cccCCCCcEEEEEEecCCCEEEEec
Q 038577          576 ANSSSGKCFTTLCYSADGSYILAGG  600 (860)
Q Consensus       576 ~~~~~~~~i~~l~~s~~g~~l~~~~  600 (860)
                          ....|.+++|-..-.|+++-+
T Consensus       242 ----e~yrvl~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  242 ----ENYRVLSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             ----CCcceeEEEEecceeEEEEec
Confidence                124699999988888887643

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.21  E-value=0.01  Score=39.34  Aligned_cols=34  Identities=12%  Similarity=0.090  Sum_probs=29.9

Q ss_pred             ccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeE
Q 038577           52 SSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVV   86 (860)
Q Consensus        52 ~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~   86 (860)
                      ...|.+++|+|...+||.++.+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            356999999999999999999999999998 5543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.15  E-value=0.015  Score=38.52  Aligned_cols=36  Identities=19%  Similarity=0.230  Sum_probs=31.5

Q ss_pred             cCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcee
Q 038577          518 HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELM  554 (860)
Q Consensus       518 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  554 (860)
                      ....|..++|+|...++|.++.+|.|.+|.+ +++.+
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            4567999999999999999999999999999 66543

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=96.14  E-value=0.45  Score=43.54  Aligned_cols=144  Identities=19%  Similarity=0.272  Sum_probs=84.0

Q ss_pred             CCEEEeeeCCeEEEEECCCCcE--EeeccCCccCeeEEEEcCCCCEEEEEcCC---C---cEEEE-EcccC----eEEE-
Q 038577           23 NTKLISPVGNRVSVTDLIKSKT--VTLPVESSSNICRIAVSPDGTFLLTVDEN---Q---RCHFI-NLHCH----VVLH-   88 (860)
Q Consensus        23 g~~l~~~~~~~i~v~d~~~~~~--~~~~~~h~~~v~~va~spdg~~la~~~~d---~---~i~vw-d~~~~----~~~~-   88 (860)
                      +.++++..++.|.+|++.+...  ...+ ..-+.|..++++..|+||++.-.+   .   .+++| |+...    +.++ 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F-~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTF-STVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEE-cchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            4444557778999999983332  3333 455889999999999999996332   2   55664 33211    1111 


Q ss_pred             ----------------------EeecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEE---EEEeecc-C-
Q 038577           89 ----------------------RVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFEL---IRTLADC-N-  141 (860)
Q Consensus        89 ----------------------~~~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~---~~~~~~h-~-  141 (860)
                                            +++...++.+++-.|-.--|++|.++.+.+|.+.........+..   ...+-.| . 
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~  187 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN  187 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence                                  112345678888888766777888999999987644321110000   0111111 1 


Q ss_pred             CCeEEEEEcCCCCeEEEeecCCeEEEEee
Q 038577          142 DKVTALNWSPDSNYLLVGSKDLAVRLFYV  170 (860)
Q Consensus       142 ~~v~~l~~s~d~~~l~s~~~dg~v~vwd~  170 (860)
                      -....++|.  +.|+|..+. -.+++..+
T Consensus       188 ~~p~~v~ic--~~yiA~~s~-~ev~Vlkl  213 (215)
T PF14761_consen  188 FKPTQVAIC--EGYIAVMSD-LEVLVLKL  213 (215)
T ss_pred             ceEEEEEEE--eeEEEEecC-CEEEEEEE
Confidence            113445554  457777654 46777655

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.09  E-value=2  Score=44.05  Aligned_cols=193  Identities=6%  Similarity=0.030  Sum_probs=97.5

Q ss_pred             CCCEEEEEE-cCCeEEEEECCC----ceeEEEEee---cC----ceeEEEEEeeCCCEEEEEEcc-----CCcEEEEEcc
Q 038577          275 GLDMVVVGF-SNGVFGLYQMPD----FVCIHLLSI---SR----EKITTAVFNELGNWLVFGCAK-----LGQLLVWEWR  337 (860)
Q Consensus       275 ~~~~l~~~~-~~g~i~~~~~~~----~~~~~~~~~---~~----~~i~~~~~s~~~~~l~~~~~~-----~g~i~v~d~~  337 (860)
                      +.++|++.+ .++.|+++|+.+    .+..+.+..   ..    .....+-.-|+|+.++++-++     .|.+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            456677665 679999999873    333444432   11    223445556788888876543     2678888888


Q ss_pred             CceEEEEecCc---ccCeEEEEEcCCCCEEEEEeC--------------------CCcEEEEECCCCeeEEEeecCCC--
Q 038577          338 SESYILKQQGH---YFDVNCLAYSPDSQLLATGAD--------------------DNKVKVWTVSSGFCFVTFTEHTN--  392 (860)
Q Consensus       338 ~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~--------------------dg~i~iwd~~~~~~~~~~~~~~~--  392 (860)
                      +..........   ..--..+.|.|..+.+++...                    ..++.+||+.+.+.++++.-...  
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            77777666432   223456778888888887542                    35799999999999998865432  


Q ss_pred             ceEEEEEeeC--CCE-EEEEeCCCcEEEEEc-cccc--eeeEeeCCC------------------CCcEEEEEECCCCCE
Q 038577          393 AVTALHFMAN--NHS-LLSASLDGTVRAWDL-FRYR--NFRTFTTPS------------------SRQFVSLASDQSGEV  448 (860)
Q Consensus       393 ~v~~i~~~~~--~~~-l~s~~~dg~i~~wd~-~~~~--~~~~~~~~~------------------~~~~~~~~~~~~~~~  448 (860)
                      .+..+.|..+  ..+ ++.+.-.++|..|-- ..++  ..+.+..+.                  +.-++.+.+|.|.++
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf  325 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF  325 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence            3556777544  333 333334444544433 2221  111121111                  234788999999999


Q ss_pred             EEEEecCCCeEEEEECCCC
Q 038577          449 ICAGTLDSFEIFVWSMKTG  467 (860)
Q Consensus       449 l~~~~~~~~~i~v~d~~~~  467 (860)
                      |.+++.-.+.++.||+...
T Consensus       326 LYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  326 LYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             EEEEETTTTEEEEEE-SST
T ss_pred             EEEEcccCCcEEEEecCCC
Confidence            9999998889999999864

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.05  E-value=2.1  Score=43.86  Aligned_cols=248  Identities=10%  Similarity=0.063  Sum_probs=121.3

Q ss_pred             eEEEEEcCCCCeEEEeecCCeEEEEeecccccCcc-cccceEeecCCCcEEEEEEccCCCCCccceEEEEcCC-------
Q 038577          144 VTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIH-TNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARD-------  215 (860)
Q Consensus       144 v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~-~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~d-------  215 (860)
                      .+.|+|.|||+.++ +...|.|++++.+.. .... ................++++|+-....  +|+.....       
T Consensus         4 P~~~a~~pdG~l~v-~e~~G~i~~~~~~g~-~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~--~lYv~~t~~~~~~~~   79 (331)
T PF07995_consen    4 PRSMAFLPDGRLLV-AERSGRIWVVDKDGS-LKTPVADLPEVFADGERGLLGIAFHPDFASNG--YLYVYYTNADEDGGD   79 (331)
T ss_dssp             EEEEEEETTSCEEE-EETTTEEEEEETTTE-ECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC---EEEEEEEEE-TSSSS
T ss_pred             ceEEEEeCCCcEEE-EeCCceEEEEeCCCc-CcceecccccccccccCCcccceeccccCCCC--EEEEEEEcccCCCCC
Confidence            47899999987655 456999999993322 1000 000112334566789999999522111  34433331       


Q ss_pred             --ccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeee-e-ccccCCCCceEEEEecCCCCEEEEEEcC------
Q 038577          216 --CYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLR-K-DDFSQAPSKVTACDYHRGLDMVVVGFSN------  285 (860)
Q Consensus       216 --g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~v~~~~~~~~~~~l~~~~~~------  285 (860)
                        ..|.-|.......                   ......... . .........-..+.|.|+|.+.++.+..      
T Consensus        80 ~~~~v~r~~~~~~~~-------------------~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~  140 (331)
T PF07995_consen   80 NDNRVVRFTLSDGDG-------------------DLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNA  140 (331)
T ss_dssp             EEEEEEEEEEETTSC-------------------EEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGG
T ss_pred             cceeeEEEeccCCcc-------------------ccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccc
Confidence              2444455443210                   001111111 1 1111233456779999999655544332      


Q ss_pred             -------CeEEEEECCCce-------------eEEEEeecCceeEEEEEeeC-CCEEEEEEccCCcEEEEEccCc-----
Q 038577          286 -------GVFGLYQMPDFV-------------CIHLLSISREKITTAVFNEL-GNWLVFGCAKLGQLLVWEWRSE-----  339 (860)
Q Consensus       286 -------g~i~~~~~~~~~-------------~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~~~g~i~v~d~~~~-----  339 (860)
                             |.|.-.+.. ++             ....+...-.....++|.|. |+..+.-...++.=.+.-+..+     
T Consensus       141 ~~~~~~~G~ilri~~d-G~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGW  219 (331)
T PF07995_consen  141 QDPNSLRGKILRIDPD-GSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGW  219 (331)
T ss_dssp             CSTTSSTTEEEEEETT-SSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--T
T ss_pred             cccccccceEEEeccc-CcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCC
Confidence                   444444432 21             11112222335668899998 5555544333222222211111     


Q ss_pred             ------------------------eEEEEecCcccCeEEEEEcC-------CCCEEEEEeCCCcEEEEECCCCeeEE---
Q 038577          340 ------------------------SYILKQQGHYFDVNCLAYSP-------DSQLLATGADDNKVKVWTVSSGFCFV---  385 (860)
Q Consensus       340 ------------------------~~~~~~~~~~~~v~~~~~s~-------~~~~l~~~~~dg~i~iwd~~~~~~~~---  385 (860)
                                              .....+..| ..+..+.|..       .|.++++.-..+.|....+..+..+.   
T Consensus       220 P~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~  298 (331)
T PF07995_consen  220 PYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE  298 (331)
T ss_dssp             TTBSSSCSTTSS-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE
T ss_pred             CCCcCCCCCCCCccccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE
Confidence                                    011222223 3456666653       34566666666788888876553322   


Q ss_pred             E-eecCCCceEEEEEeeCCCEEEEEeCCCcEE
Q 038577          386 T-FTEHTNAVTALHFMANNHSLLSASLDGTVR  416 (860)
Q Consensus       386 ~-~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~  416 (860)
                      . +......+..+++.|||..+++...+|.|.
T Consensus       299 ~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  299 EFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             EECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             EccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            2 223444799999999998888888888764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.95  E-value=1.7  Score=42.00  Aligned_cols=209  Identities=14%  Similarity=0.138  Sum_probs=123.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECC------CC-eeEEEeec-----CCCceEEEEEeeCCC------------EE
Q 038577          351 DVNCLAYSPDSQLLATGADDNKVKVWTVS------SG-FCFVTFTE-----HTNAVTALHFMANNH------------SL  406 (860)
Q Consensus       351 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~------~~-~~~~~~~~-----~~~~v~~i~~~~~~~------------~l  406 (860)
                      .-+.++++|.+.+-++....+...+||..      .. ..+..+..     .....+.+.|+....            .+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            35789999999888887778899999986      12 22333331     234677787764322            36


Q ss_pred             EEEeCCCcEEEEEccccce-----eeEeeCCC-CCcEEEEEEC--CCCCEEEEEecCCCeEEEEECCCCceEEEecCccc
Q 038577          407 LSASLDGTVRAWDLFRYRN-----FRTFTTPS-SRQFVSLASD--QSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEG  478 (860)
Q Consensus       407 ~s~~~dg~i~~wd~~~~~~-----~~~~~~~~-~~~~~~~~~~--~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~  478 (860)
                      +.+++||+|.-|...-...     ...+.... ..-...+++.  ..+.+|+++....++|.+||-.-.+.... .....
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~-g~F~D  182 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP-GSFID  182 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC-CCccC
Confidence            7889999999998533222     12222221 2223444444  44778888777777999998653322100 00000


Q ss_pred             CeEEEEEcC------CCCEEEE-------------EeCCCcEEEEEccCCcceeEEc--ccCCCeEEEEEee------CC
Q 038577          479 PVHGLVFSP------TNATLAS-------------SSWDKTVRLWNVFEGKGSVESF--PHTHDVLTVVYRP------DG  531 (860)
Q Consensus       479 ~v~~l~~s~------~~~~l~s-------------~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~------~~  531 (860)
                      +-.-.-|.|      .+++.++             +..-|.|-+||.... .+.++.  +.-...+.++..|      .|
T Consensus       183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~-l~~r~as~g~LNaPWG~a~APa~FG~~sg  261 (336)
T TIGR03118       183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ-LLRRVASSGRLNAPWGLAIAPESFGSLSG  261 (336)
T ss_pred             CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc-EEEEeccCCcccCCceeeeChhhhCCCCC
Confidence            000001111      1222222             223468999997544 333332  3344567777766      56


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEEeccc
Q 038577          532 RQLACSTLDGQIHFWDPLNGELMYTIEGRR  561 (860)
Q Consensus       532 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  561 (860)
                      .+|+---.||+|..||..+++.+..+....
T Consensus       262 ~lLVGNFGDG~InaFD~~sG~~~g~L~~~~  291 (336)
T TIGR03118       262 ALLVGNFGDGTINAYDPQSGAQLGQLLDPD  291 (336)
T ss_pred             CeEEeecCCceeEEecCCCCceeeeecCCC
Confidence            677766779999999999999888776543

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.93  E-value=0.93  Score=45.92  Aligned_cols=108  Identities=15%  Similarity=0.199  Sum_probs=80.1

Q ss_pred             EeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEe----e-cCCceeEEEECCCCCEEEEEeCCeEEEE
Q 038577           45 VTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRV----R-FKYPVNAILFSPNGKYIAVGTGKLVQIW  119 (860)
Q Consensus        45 ~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~----~-~~~~v~~~~fspdg~~la~~~~~~i~iw  119 (860)
                      ..+....+++|.++.||+|.+.||+--.+.+|.+.+....+.....    + ....|....|+.. .-+|...+..+.+|
T Consensus        59 iSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y  137 (657)
T KOG2377|consen   59 ISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQGIEFY  137 (657)
T ss_pred             ceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCCeEEE
Confidence            4444457789999999999999999999999999988544333222    2 2345889999865 77888878888888


Q ss_pred             eCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEe
Q 038577          120 RSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVG  159 (860)
Q Consensus       120 d~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~  159 (860)
                      -......      .++..+.|...|....|.++.+.++-+
T Consensus       138 ~v~pekr------slRlVks~~~nvnWy~yc~et~v~LL~  171 (657)
T KOG2377|consen  138 QVLPEKR------SLRLVKSHNLNVNWYMYCPETAVILLS  171 (657)
T ss_pred             EEchhhh------hhhhhhhcccCccEEEEccccceEeee
Confidence            7765543      245566788899999999988755443

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=95.82  E-value=4.6  Score=45.93  Aligned_cols=172  Identities=15%  Similarity=0.179  Sum_probs=88.5

Q ss_pred             cEEEEEccCceEEEEecCc----ccCeEEEEEcCCCC--EEEEEeC-----------CCcEEEEECC-CCeeEEEee--c
Q 038577          330 QLLVWEWRSESYILKQQGH----YFDVNCLAYSPDSQ--LLATGAD-----------DNKVKVWTVS-SGFCFVTFT--E  389 (860)
Q Consensus       330 ~i~v~d~~~~~~~~~~~~~----~~~v~~~~~s~~~~--~l~~~~~-----------dg~i~iwd~~-~~~~~~~~~--~  389 (860)
                      .|++.|..+++.+..+.-.    ...+..+.|+....  ++++|..           +|.++.|+.- .++.+.-+.  .
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            5778888877766555321    22355556655333  3333322           3446666643 333222221  1


Q ss_pred             CCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCC-CCcEEEEEECCCCCEEEEEecCC-CeEEEEECCCC
Q 038577          390 HTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPS-SRQFVSLASDQSGEVICAGTLDS-FEIFVWSMKTG  467 (860)
Q Consensus       390 ~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~-~~i~v~d~~~~  467 (860)
                      -.++|.  +++|...++++| ....+++||+.+.+..+...... +..+..+.  ..+..+++|.... .....|+....
T Consensus       934 ~~~~v~--Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iq--t~~~RI~VgD~qeSV~~~~y~~~~n 1008 (1205)
T KOG1898|consen  934 IPGPVG--AICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQ--TYGARIVVGDIQESVHFVRYRREDN 1008 (1205)
T ss_pred             CCccce--EEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEe--ecceEEEEeeccceEEEEEEecCCC
Confidence            223343  445655555544 44689999998887776655544 22333333  3455666666544 23344554444


Q ss_pred             ceEEEecC-cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 038577          468 RLLDILSG-HEGPVHGLVFSPTNATLASSSWDKTVRLWNVF  507 (860)
Q Consensus       468 ~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~  507 (860)
                      +++..... -...|+++.+- |...+|.+..-|.+.+-.+.
T Consensus      1009 ~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1009 QLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred             eEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence            44332221 22345555554 44557766666666655543

>PHA03098 kelch-like protein; Provisional

Probab=95.68  E-value=0.43  Score=53.15  Aligned_cols=188  Identities=10%  Similarity=0.027  Sum_probs=90.0

Q ss_pred             CCCEEEEEeCCC------cEEEEECCCCeeEEEe--ecCCCceEEEEEeeCCCEEEEEeCCC-----cEEEEEcccccee
Q 038577          360 DSQLLATGADDN------KVKVWTVSSGFCFVTF--TEHTNAVTALHFMANNHSLLSASLDG-----TVRAWDLFRYRNF  426 (860)
Q Consensus       360 ~~~~l~~~~~dg------~i~iwd~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~s~~~dg-----~i~~wd~~~~~~~  426 (860)
                      ++..++.|+.++      .+..||..+..-...-  ........ + ..-+++.++.||.++     .+..||..+.+-.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~-~-~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPG-V-TVFNNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccce-E-EEECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            455666666432      5677887765442211  11111111 2 223566777787653     4667887654422


Q ss_pred             eEeeCCCCCcEEEEEECCCCCEEEEEecCC-----CeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCC--
Q 038577          427 RTFTTPSSRQFVSLASDQSGEVICAGTLDS-----FEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDK--  499 (860)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg--  499 (860)
                      ..-..+.+..-.++ ..-+++..+.|+...     ..+..||..+.+....-......-...+...++...+.|+.++  
T Consensus       372 ~~~~lp~~r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~  450 (534)
T PHA03098        372 EEPPLIFPRYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYID  450 (534)
T ss_pred             eCCCcCcCCccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCC
Confidence            21112222111222 233566666666321     2688999887654322111111111112223566667776432  


Q ss_pred             ------cEEEEEccCCcceeEE-ccc-CCCeEEEEEeeCCCEEEEEeCC-----CeEEEEeCCCCc
Q 038577          500 ------TVRLWNVFEGKGSVES-FPH-THDVLTVVYRPDGRQLACSTLD-----GQIHFWDPLNGE  552 (860)
Q Consensus       500 ------~i~iwd~~~~~~~~~~-~~~-~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~  552 (860)
                            .+.+||..+.+-.... ... ......+.  -++++++.|+.+     ..+.+||+.+.+
T Consensus       451 ~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        451 NIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence                  3788888765421110 111 11111222  267777777654     468888877654

>PHA03098 kelch-like protein; Provisional

Probab=95.63  E-value=0.5  Score=52.60  Aligned_cols=191  Identities=10%  Similarity=0.046  Sum_probs=90.2

Q ss_pred             CCCCEEEEEEcC------CeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccC----CcEEEEEccCceEEE
Q 038577          274 RGLDMVVVGFSN------GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKL----GQLLVWEWRSESYIL  343 (860)
Q Consensus       274 ~~~~~l~~~~~~------g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~----g~i~v~d~~~~~~~~  343 (860)
                      .++..+++|+.+      ..+..||..+.+-...-.............-++...++++...    ..+..||..+++...
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~  372 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWRE  372 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence            455666677654      2577888776554332111111112222334566666665431    357788887765443


Q ss_pred             EecCcccC-eEEEEEcCCCCEEEEEeCC------CcEEEEECCCCeeEEE--eecCCCceEEEEEeeCCCEEEEEeCCC-
Q 038577          344 KQQGHYFD-VNCLAYSPDSQLLATGADD------NKVKVWTVSSGFCFVT--FTEHTNAVTALHFMANNHSLLSASLDG-  413 (860)
Q Consensus       344 ~~~~~~~~-v~~~~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~dg-  413 (860)
                      ........ -.+++ .-+++..+.|+.+      +.+..||+.+++-...  +...... .++ ...++..++.||.++ 
T Consensus       373 ~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~-~~~~~~iyv~GG~~~~  449 (534)
T PHA03098        373 EPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCA-IYHDGKIYVIGGISYI  449 (534)
T ss_pred             CCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceE-EEECCEEEEECCccCC
Confidence            21111111 11122 2356677777632      3578888876533221  1111111 122 223566666666432 


Q ss_pred             -------cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC----CeEEEEECCCCc
Q 038577          414 -------TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS----FEIFVWSMKTGR  468 (860)
Q Consensus       414 -------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~i~v~d~~~~~  468 (860)
                             .+.+||..+.+=...-..+.+....+++ .-+++.++.|+.++    ..+.+||..+.+
T Consensus       450 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        450 DNIKVYNIVESYNPVTNKWTELSSLNFPRINASLC-IFNNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CCCcccceEEEecCCCCceeeCCCCCcccccceEE-EECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence                   3778887765422211111111111122 22566666666541    267778777654

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.46  E-value=0.63  Score=48.65  Aligned_cols=145  Identities=15%  Similarity=0.206  Sum_probs=80.2

Q ss_pred             CcEEEEEECCCCCEEEEEec-----------CCCeEEEEECCC--Cce--EEEecCcccCeEEEEEcCCCCEEEEEeCCC
Q 038577          435 RQFVSLASDQSGEVICAGTL-----------DSFEIFVWSMKT--GRL--LDILSGHEGPVHGLVFSPTNATLASSSWDK  499 (860)
Q Consensus       435 ~~~~~~~~~~~~~~l~~~~~-----------~~~~i~v~d~~~--~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg  499 (860)
                      .....++++++|+++++...           .+..|.+++-..  |+.  ...+.........+++.+++ +++ ++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence            35678899999998777531           122677776543  332  23343334456889999988 444 44443


Q ss_pred             cEEEEEccCC-----c--ceeEEcc-----cCCCeEEEEEeeCCCEEEEEeCC-------------------CeEEEEeC
Q 038577          500 TVRLWNVFEG-----K--GSVESFP-----HTHDVLTVVYRPDGRQLACSTLD-------------------GQIHFWDP  548 (860)
Q Consensus       500 ~i~iwd~~~~-----~--~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~d-------------------g~i~iwd~  548 (860)
                      ..++.|....     +  .+..-..     +......++|.|||.+.++.+..                   |.|.-++.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            3333344321     1  1111111     13447789999999876655421                   33444454


Q ss_pred             CCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCC
Q 038577          549 LNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSS  602 (860)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d  602 (860)
                      .+++....-.+.+                     ....++|+|+|+++++-..+
T Consensus       172 dg~~~e~~a~G~r---------------------np~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       172 DGGKLRVVAHGFQ---------------------NPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             CCCeEEEEecCcC---------------------CCccceECCCCCEEEEccCC
Confidence            4433222112222                     25789999999988765433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=95.45  E-value=2.4  Score=40.14  Aligned_cols=233  Identities=9%  Similarity=-0.004  Sum_probs=149.9

Q ss_pred             CCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEE
Q 038577          264 PSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYIL  343 (860)
Q Consensus       264 ~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~  343 (860)
                      .+.-..++..|||..-+++...|.|--.|..+++....--........+..-|||..-++-...  .|.-.|-++.+...
T Consensus        61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~--aI~R~dpkt~evt~  138 (353)
T COG4257          61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL--AIGRLDPKTLEVTR  138 (353)
T ss_pred             CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc--eeEEecCcccceEE
Confidence            3456778889999999999999999999998888776655555667788888888776654332  45555655543322


Q ss_pred             E-e--cCcccCeEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeC
Q 038577          344 K-Q--QGHYFDVNCLAYSPDSQLLATGADD---------NKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASL  411 (860)
Q Consensus       344 ~-~--~~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~  411 (860)
                      - +  ...........|.+.|+.-+++...         +.|++|+..          .......|+..|+|..-++.-.
T Consensus       139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwyasla  208 (353)
T COG4257         139 FPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWYASLA  208 (353)
T ss_pred             eecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEEEecc
Confidence            1 1  2234567788899999888887531         234444432          3345678899999988888777


Q ss_pred             CCcEEEEEccccceeeEeeCCC--CCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceE-EEecCcccCeEEEEEcCC
Q 038577          412 DGTVRAWDLFRYRNFRTFTTPS--SRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLL-DILSGHEGPVHGLVFSPT  488 (860)
Q Consensus       412 dg~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~-~~~~~h~~~v~~l~~s~~  488 (860)
                      +..|...|..++ ....+..+.  ......+..+|.|+.-++....+ .+..||.....-. ..+.+....-.++.....
T Consensus       209 gnaiaridp~~~-~aev~p~P~~~~~gsRriwsdpig~~wittwg~g-~l~rfdPs~~sW~eypLPgs~arpys~rVD~~  286 (353)
T COG4257         209 GNAIARIDPFAG-HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTG-SLHRFDPSVTSWIEYPLPGSKARPYSMRVDRH  286 (353)
T ss_pred             ccceEEcccccC-CcceecCCCcccccccccccCccCcEEEeccCCc-eeeEeCcccccceeeeCCCCCCCcceeeeccC
Confidence            778888887766 333333332  23345566778888777655444 8888887654432 344555555566666555


Q ss_pred             CCEEEEEeCCCcEEEEEccCCc
Q 038577          489 NATLASSSWDKTVRLWNVFEGK  510 (860)
Q Consensus       489 ~~~l~s~~~dg~i~iwd~~~~~  510 (860)
                      ++.-.+--..|.|.-+|-++.+
T Consensus       287 grVW~sea~agai~rfdpeta~  308 (353)
T COG4257         287 GRVWLSEADAGAIGRFDPETAR  308 (353)
T ss_pred             CcEEeeccccCceeecCcccce
Confidence            5544444444566666655543

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.34  E-value=4.4  Score=42.42  Aligned_cols=266  Identities=11%  Similarity=0.045  Sum_probs=140.1

Q ss_pred             CCCEEEEEEcCCeEEEEECCCce-----eEEEEeecCceeEEEEEee-----CCCEEEEEEccCCcEEEEEccCc--e--
Q 038577          275 GLDMVVVGFSNGVFGLYQMPDFV-----CIHLLSISREKITTAVFNE-----LGNWLVFGCAKLGQLLVWEWRSE--S--  340 (860)
Q Consensus       275 ~~~~l~~~~~~g~i~~~~~~~~~-----~~~~~~~~~~~i~~~~~s~-----~~~~l~~~~~~~g~i~v~d~~~~--~--  340 (860)
                      +.+.+++|+..|.+++|+.....     .+.+. .-..+|..+..-+     +...|++- .. ..+.+|.+...  .  
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaVL-hP-~kl~vY~v~~~~g~~~  112 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAVL-HP-RKLSVYSVSLVDGTVE  112 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEEe-cC-CEEEEEEEEecCCCcc
Confidence            44689999999999999986433     11111 2234666665542     22344443 33 68888877321  1  


Q ss_pred             -----EEEEecCccc--CeEEEEEcC----C-CCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEE
Q 038577          341 -----YILKQQGHYF--DVNCLAYSP----D-SQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLS  408 (860)
Q Consensus       341 -----~~~~~~~~~~--~v~~~~~s~----~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s  408 (860)
                           .+.....|.-  ....+++-|    . ..++++-+.||.+.+|+-+.-.....+.. .--...+++++....+++
T Consensus       113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt  191 (418)
T PF14727_consen  113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVT  191 (418)
T ss_pred             cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEE
Confidence                 1122222321  122333322    2 35788889999999999665443333332 333456788888889999


Q ss_pred             EeCCCcEEEEEccccce---------------------eeEeeCCCCCcEEE---EEECCCCCEEEEEecCCCeEEEEEC
Q 038577          409 ASLDGTVRAWDLFRYRN---------------------FRTFTTPSSRQFVS---LASDQSGEVICAGTLDSFEIFVWSM  464 (860)
Q Consensus       409 ~~~dg~i~~wd~~~~~~---------------------~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~i~v~d~  464 (860)
                      ++.+..+..|....-..                     ...+...-...+..   +.++.....+++-+..  .+++.+.
T Consensus       192 ~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger--~Lf~l~~  269 (418)
T PF14727_consen  192 ASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGER--SLFCLKD  269 (418)
T ss_pred             ecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecc--eEEEEcC
Confidence            99998999887632110                     00111111122222   3333333344444333  5777775


Q ss_pred             CCCceEEEecCcccCeEEE-EEcC----CC---CEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEE---EeeCCCE
Q 038577          465 KTGRLLDILSGHEGPVHGL-VFSP----TN---ATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVV---YRPDGRQ  533 (860)
Q Consensus       465 ~~~~~~~~~~~h~~~v~~l-~~s~----~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~---~s~~~~~  533 (860)
                       +|.+....+ ......++ .|..    ++   ..++.++.++++.||.=.  +..........+ .++.   |..-...
T Consensus       270 -~G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L~WsA~l~~~P-Val~v~~~~~~~G~  344 (418)
T PF14727_consen  270 -NGSLRFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TLVWSAQLPHVP-VALSVANFNGLKGL  344 (418)
T ss_pred             -CCeEEEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eEEEecCCCCCC-EEEEecccCCCCce
Confidence             355443333 22222222 2221    22   247888889999998632  212221112222 2332   2223447


Q ss_pred             EEEEeCCCeEEEEeCCCC
Q 038577          534 LACSTLDGQIHFWDPLNG  551 (860)
Q Consensus       534 l~~~~~dg~i~iwd~~~~  551 (860)
                      +++-+.+|.+.+-=+.|.
T Consensus       345 IV~Ls~~G~L~v~YLGTd  362 (418)
T PF14727_consen  345 IVSLSDEGQLSVSYLGTD  362 (418)
T ss_pred             EEEEcCCCcEEEEEeCCC
Confidence            777788888887766543

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.31  E-value=0.93  Score=49.57  Aligned_cols=115  Identities=15%  Similarity=0.191  Sum_probs=76.2

Q ss_pred             cCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeec--CCceeEEEEC--CCCC-EEEEEeCCeEEEEeC-----C
Q 038577           53 SNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRF--KYPVNAILFS--PNGK-YIAVGTGKLVQIWRS-----P  122 (860)
Q Consensus        53 ~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~--~~~v~~~~fs--pdg~-~la~~~~~~i~iwd~-----~  122 (860)
                      ..++-+.-|.-++..++-+...++.|||...+.....-.+  .+.|.++.|.  |||+ .||+|-.+.|.+|--     .
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            3456666666666555545557899999999886665554  8899999995  5775 566778888888853     2


Q ss_pred             CCCcccceeEEEEEeeccC-CCeEEEEEcCCCCeEEEeecCCeEEEEee
Q 038577          123 GFKKEVFAFELIRTLADCN-DKVTALNWSPDSNYLLVGSKDLAVRLFYV  170 (860)
Q Consensus       123 ~~~~~~~~~~~~~~~~~h~-~~v~~l~~s~d~~~l~s~~~dg~v~vwd~  170 (860)
                      ...+.+.+.+.+ .+..|+ .+|.+..|.++|..++.++  ..+.|+|-
T Consensus       110 ~~~p~w~~i~~i-~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  110 NKGPSWAPIRKI-DISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             cCCcccceeEEE-EeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence            233333333222 234454 6799999999997555443  46778764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.25  E-value=0.55  Score=51.74  Aligned_cols=155  Identities=14%  Similarity=0.117  Sum_probs=98.3

Q ss_pred             ccCCcEEEeCCCEEEeeeCCeEEEEECCCCcEEee------c--c--------------CCccCeeEEEEcC--CCCEEE
Q 038577           13 YRGGNAVLSQNTKLISPVGNRVSVTDLIKSKTVTL------P--V--------------ESSSNICRIAVSP--DGTFLL   68 (860)
Q Consensus        13 ~~~~~~~~sdg~~l~~~~~~~i~v~d~~~~~~~~~------~--~--------------~h~~~v~~va~sp--dg~~la   68 (860)
                      |+..-.+.+.+.+++.+.++.|.||++..-.....      +  .              .....|..|.+..  +...|+
T Consensus        39 fKNNLtalsq~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl  118 (717)
T PF08728_consen   39 FKNNLTALSQRNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLL  118 (717)
T ss_pred             cccceeEEecCCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEE
Confidence            44444444468899999999999999875443210      0  0              0112244444432  456788


Q ss_pred             EEcCCCcEEEEEccc-------C-------------eEEEEeecCCceeEEEEC--CCCCEEEEE-eCCeEEEEeCCCCC
Q 038577           69 TVDENQRCHFINLHC-------H-------------VVLHRVRFKYPVNAILFS--PNGKYIAVG-TGKLVQIWRSPGFK  125 (860)
Q Consensus        69 ~~~~d~~i~vwd~~~-------~-------------~~~~~~~~~~~v~~~~fs--pdg~~la~~-~~~~i~iwd~~~~~  125 (860)
                      .+.+||.|.+|.+++       .             ++...+..+..+.++++.  ...++||++ ....|.||-.....
T Consensus       119 ~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~  198 (717)
T PF08728_consen  119 LCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVD  198 (717)
T ss_pred             EEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccc
Confidence            899999999996531       1             012233356678899998  888999999 55677777654421


Q ss_pred             cccceeEEEEEeeccCCCeEEEEEcCCC---C---eEEEeecCCeEEEEeec
Q 038577          126 KEVFAFELIRTLADCNDKVTALNWSPDS---N---YLLVGSKDLAVRLFYVK  171 (860)
Q Consensus       126 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~---~---~l~s~~~dg~v~vwd~~  171 (860)
                      ....    ...-..|...|.+|+|-++.   .   .+++++-.|.+.+|++.
T Consensus       199 ~r~~----~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  199 ERFY----HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             cccc----cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            1100    01111266779999997754   2   67788889999999883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.19  E-value=1  Score=47.12  Aligned_cols=106  Identities=11%  Similarity=0.072  Sum_probs=59.8

Q ss_pred             cCeeEEEEcCCCCEEEEEc-----------CCC-cEEEEEccc--CeE--EEEee-cCCceeEEEECCCCCEEEEEeCCe
Q 038577           53 SNICRIAVSPDGTFLLTVD-----------ENQ-RCHFINLHC--HVV--LHRVR-FKYPVNAILFSPNGKYIAVGTGKL  115 (860)
Q Consensus        53 ~~v~~va~spdg~~la~~~-----------~d~-~i~vwd~~~--~~~--~~~~~-~~~~v~~~~fspdg~~la~~~~~~  115 (860)
                      ....+|+|.++|+++++-.           ..+ .|.+++-.+  |+.  ...+. .-.....++|.++| ++++. ...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~-~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVAT-PPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeC-CCe
Confidence            4568899999999777642           223 677776432  332  22222 23346889999999 55543 444


Q ss_pred             EEEE-eCCCCCccc-ceeEEEEEeec----cCCCeEEEEEcCCCCeEEEee
Q 038577          116 VQIW-RSPGFKKEV-FAFELIRTLAD----CNDKVTALNWSPDSNYLLVGS  160 (860)
Q Consensus       116 i~iw-d~~~~~~~~-~~~~~~~~~~~----h~~~v~~l~~s~d~~~l~s~~  160 (860)
                      |..| +........ ..-.++..+..    +......++|.|||.+.++.+
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            5444 554322111 11122333332    234477899999998766544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=95.13  E-value=2.6  Score=38.76  Aligned_cols=116  Identities=16%  Similarity=0.189  Sum_probs=70.9

Q ss_pred             CeeEEEEcCCCCEEEEEcCCCcEEEEEcc--cCeEEEEeecCCceeEEEECCCCCEEEEE----eCC---eEEEE-eCCC
Q 038577           54 NICRIAVSPDGTFLLTVDENQRCHFINLH--CHVVLHRVRFKYPVNAILFSPNGKYIAVG----TGK---LVQIW-RSPG  123 (860)
Q Consensus        54 ~v~~va~spdg~~la~~~~d~~i~vwd~~--~~~~~~~~~~~~~v~~~~fspdg~~la~~----~~~---~i~iw-d~~~  123 (860)
                      +..++.-++.+ .|..+...+.|.+|++.  ..+.+.++..-+.|..+.++..|+||++-    ...   .+++| |+..
T Consensus        19 EP~~~c~~g~d-~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~   97 (215)
T PF14761_consen   19 EPTAVCCGGPD-ALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRS   97 (215)
T ss_pred             CcceeeccCCc-eEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhh
Confidence            34444444433 34333455789999988  55677778777999999999999999998    122   55654 3332


Q ss_pred             CCcccceeEEEEEeecc---------------------CCCeEEEEEcCCCCeEEEeecCCeEEEEeeccc
Q 038577          124 FKKEVFAFELIRTLADC---------------------NDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEK  173 (860)
Q Consensus       124 ~~~~~~~~~~~~~~~~h---------------------~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~  173 (860)
                      ......+  ...++.||                     ...+.+++..|-..-|+.|+. +.+.+|.+...
T Consensus        98 ~~~~~~~--v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~  165 (215)
T PF14761_consen   98 QKEENSP--VRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQ  165 (215)
T ss_pred             hcccCCc--EEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEE
Confidence            2111111  11122222                     335677777775555666655 48999988765

>PRK13684 Ycf48-like protein; Provisional

Probab=95.05  E-value=4.8  Score=41.32  Aligned_cols=177  Identities=11%  Similarity=0.146  Sum_probs=96.4

Q ss_pred             EEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEE-EECCCCc-eEEEecCcccCeEEEEE
Q 038577          408 SASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFV-WSMKTGR-LLDILSGHEGPVHGLVF  485 (860)
Q Consensus       408 s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v-~d~~~~~-~~~~~~~h~~~v~~l~~  485 (860)
                      .++..|.|.. ....++.-..+..+....+..+.+.|++.+++++...  .++. +| ..++ .......-...++++.+
T Consensus       147 ~~g~~G~i~~-S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~~G--~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~  222 (334)
T PRK13684        147 MATNVGAIYR-TTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSSRG--NFYSTWE-PGQTAWTPHQRNSSRRLQSMGF  222 (334)
T ss_pred             eeeccceEEE-ECCCCCCceeCcCCCcceEEEEEECCCCeEEEEeCCc--eEEEEcC-CCCCeEEEeeCCCcccceeeeE
Confidence            3444444422 2223444444444555678889999998877666543  3332 22 2222 22222334567899999


Q ss_pred             cCCCCEEEEEeCCCcEEEEEccCCcceeEEc-c---cCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEeccc
Q 038577          486 SPTNATLASSSWDKTVRLWNVFEGKGSVESF-P---HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRR  561 (860)
Q Consensus       486 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  561 (860)
                      .++++.++.+ ..|.+++=....+..-.... +   ....+.++.+.|++..++++ .+|.+. ...+.|+.-...+...
T Consensus       223 ~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~  299 (334)
T PRK13684        223 QPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGE  299 (334)
T ss_pred             cCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCC
Confidence            9999877665 46766532333333111111 1   22457889999988765554 566554 3444444333332111


Q ss_pred             ccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEE
Q 038577          562 DISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYD  609 (860)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd  609 (860)
                      ..                 ......+.|..+++.++ .+..|.|.-|+
T Consensus       300 ~~-----------------~~~~~~~~~~~~~~~~~-~G~~G~il~~~  329 (334)
T PRK13684        300 EV-----------------PSNFYKIVFLDPEKGFV-LGQRGVLLRYV  329 (334)
T ss_pred             CC-----------------CcceEEEEEeCCCceEE-ECCCceEEEec
Confidence            10                 12377888877776655 55677776665

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.04  E-value=8.1  Score=43.88  Aligned_cols=34  Identities=21%  Similarity=0.251  Sum_probs=28.3

Q ss_pred             CCceEEEEecCC---CCEEEEEEcCCeEEEEECCCce
Q 038577          264 PSKVTACDYHRG---LDMVVVGFSNGVFGLYQMPDFV  297 (860)
Q Consensus       264 ~~~v~~~~~~~~---~~~l~~~~~~g~i~~~~~~~~~  297 (860)
                      ...|..+.|+|.   +..|++-+.|+.+++||+....
T Consensus       146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence            456888999987   4899999999999999996543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.02  E-value=0.012  Score=59.27  Aligned_cols=149  Identities=11%  Similarity=0.098  Sum_probs=109.0

Q ss_pred             eeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEE--eCCeEEEEeCCCCCcccceeE
Q 038577           55 ICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG--TGKLVQIWRSPGFKKEVFAFE  132 (860)
Q Consensus        55 v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~--~~~~i~iwd~~~~~~~~~~~~  132 (860)
                      .-...|-|.+.-++.++.+..+..||- .++.......++...+++|..+|..+++.  ..+.+.+||+.+...+.    
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq----  111 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ----  111 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhh-hcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH----
Confidence            345567788877998888888889984 45555555567778889999999888777  77899999998754210    


Q ss_pred             EEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEE
Q 038577          133 LIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTI  212 (860)
Q Consensus       133 ~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~  212 (860)
                        -.+ +-...-.-+.|++.+..++.+...|.+.|++..+.      +.......|...+.++++.+.+      +.+.+
T Consensus       112 --LE~-gg~~s~sll~wsKg~~el~ig~~~gn~viynhgts------R~iiv~Gkh~RRgtq~av~lEd------~vil~  176 (615)
T KOG2247|consen  112 --LES-GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTS------RRIIVMGKHQRRGTQIAVTLED------YVILC  176 (615)
T ss_pred             --Hhc-cCcchHHHHhhccCCccccccccccceEEEeccch------hhhhhhcccccceeEEEecccc------eeeec
Confidence              011 11112223789999999999999999999998877      4455555599999999999987      67777


Q ss_pred             cCCccEEEeee
Q 038577          213 ARDCYMFSWGF  223 (860)
Q Consensus       213 ~~dg~i~~w~~  223 (860)
                      +.|..+.+-..
T Consensus       177 dcd~~L~v~~q  187 (615)
T KOG2247|consen  177 DCDNTLSVTTQ  187 (615)
T ss_pred             CcHHHHHHhhh
Confidence            77766654433

>PHA02790 Kelch-like protein; Provisional

Probab=94.89  E-value=1.4  Score=47.91  Aligned_cols=187  Identities=12%  Similarity=0.030  Sum_probs=89.1

Q ss_pred             CCCEEEEEeCCC-----cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC-CeEEEEECCCCceEEEecC
Q 038577          402 NNHSLLSASLDG-----TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS-FEIFVWSMKTGRLLDILSG  475 (860)
Q Consensus       402 ~~~~l~s~~~dg-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~i~v~d~~~~~~~~~~~~  475 (860)
                      ++..+++||.++     .+..||..+.+-...-..+....-.++ ..-++...++|+.++ ..+..||..+++....-.-
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~-v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l  349 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASG-VPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL  349 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceE-EEECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence            344566666543     466788766543222222222111222 234667777777532 3688888776544322111


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCC---cEEEEEccCCcceeEEcc-cCCC-eEEEEEeeCCCEEEEEeCCCeEEEEeCCC
Q 038577          476 HEGPVHGLVFSPTNATLASSSWDK---TVRLWNVFEGKGSVESFP-HTHD-VLTVVYRPDGRQLACSTLDGQIHFWDPLN  550 (860)
Q Consensus       476 h~~~v~~l~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~-~~~~-v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  550 (860)
                      ....-...+..-+|+..+.|+.++   .+..||..+.+  ..... ...+ ....+..-++++.+.|   |.+.+||..+
T Consensus       350 ~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~--W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~  424 (480)
T PHA02790        350 LKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQ--WQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESS  424 (480)
T ss_pred             CCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCE--EEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCC
Confidence            111111112223677777777653   46778876553  11111 0001 1112223366666665   3567888766


Q ss_pred             CceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCC-----CeEEEEECCCce
Q 038577          551 GELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSS-----KYICMYDVADQV  614 (860)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-----g~v~vwd~~~~~  614 (860)
                      .+-...-.....                  ......+  .-+|+..+.||.+     ..+..||..+++
T Consensus       425 ~~W~~~~~m~~~------------------r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        425 NTWTLIDDPIYP------------------RDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             CcEeEcCCCCCC------------------ccccEEE--EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence            532211111100                  0012222  3377877888754     356777777664

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.80  E-value=3.1  Score=45.38  Aligned_cols=214  Identities=10%  Similarity=0.059  Sum_probs=109.6

Q ss_pred             EEEEecCCCCEEEEEEcC----------CeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc
Q 038577          268 TACDYHRGLDMVVVGFSN----------GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR  337 (860)
Q Consensus       268 ~~~~~~~~~~~l~~~~~~----------g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~  337 (860)
                      .-++..|.|.-+|+.-.+          -.|+||+. +|..+..+.-....+..+.|+.+...+++.  .+|++.+|++-
T Consensus        36 ~~fa~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~--k~g~v~Vy~~~  112 (829)
T KOG2280|consen   36 VYFACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICVQ--KDGTVHVYGLL  112 (829)
T ss_pred             eEEEecccCCceEEEecccccccccccceeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEEe--ccceEEEeecc
Confidence            344445555555555444          34788887 666666655555688999999887766654  34999999986


Q ss_pred             CceEEEE---ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeec---CCCceEEEEEeeCCC---EEEE
Q 038577          338 SESYILK---QQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTE---HTNAVTALHFMANNH---SLLS  408 (860)
Q Consensus       338 ~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~i~~~~~~~---~l~s  408 (860)
                      .......   .......|..+.+..+|-.+.+  .+|.+.+-+-.....+..+..   ...+-.+-...+++.   .++-
T Consensus       113 ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~  190 (829)
T KOG2280|consen  113 GEFIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLD  190 (829)
T ss_pred             hhhhcccccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEe
Confidence            5432221   1222334555555556633333  344554433222212222221   111111211122211   1111


Q ss_pred             Ee-CCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec--CcccCeEEEEE
Q 038577          409 AS-LDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS--GHEGPVHGLVF  485 (860)
Q Consensus       409 ~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~--~h~~~v~~l~~  485 (860)
                      .. ..+ ..++..................+..+.+||++++|+.-...| .|.+.+....+....+.  .|. +...++|
T Consensus       191 v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G-~i~~vs~D~~~~lce~~~~~~~-~p~qm~W  267 (829)
T KOG2280|consen  191 VDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETG-KIWVVSIDLSQILCEFNCTDHD-PPKQMAW  267 (829)
T ss_pred             echhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCC-cEEEEecchhhhhhccCCCCCC-chHhcee
Confidence            11 000 011111111111111111135678899999999999999888 89998888776666554  232 2235666


Q ss_pred             cCCC
Q 038577          486 SPTN  489 (860)
Q Consensus       486 s~~~  489 (860)
                      ..+.
T Consensus       268 cgnd  271 (829)
T KOG2280|consen  268 CGND  271 (829)
T ss_pred             ecCC
Confidence            5443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.74  E-value=1.8  Score=47.10  Aligned_cols=183  Identities=14%  Similarity=0.114  Sum_probs=97.9

Q ss_pred             CcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeE-e-eCCCCCcEEEEEECCCCCE
Q 038577          371 NKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRT-F-TTPSSRQFVSLASDQSGEV  448 (860)
Q Consensus       371 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~  448 (860)
                      -.|+||+. +|..+..+.-....+..+.|+.+. .|++...+|++.+|++........ . .......|..+.+..+|-.
T Consensus        64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVa  141 (829)
T KOG2280|consen   64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVA  141 (829)
T ss_pred             eeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceE
Confidence            46888886 466666555555588899998765 678888999999999853322110 1 0111223444555555554


Q ss_pred             EEEEecCCCeEEEEECCCCceEEEecC---cccCeEEEEEcCCCC---EEEEEe-CCCcEEEEEccCCcc-eeEEcccCC
Q 038577          449 ICAGTLDSFEIFVWSMKTGRLLDILSG---HEGPVHGLVFSPTNA---TLASSS-WDKTVRLWNVFEGKG-SVESFPHTH  520 (860)
Q Consensus       449 l~~~~~~~~~i~v~d~~~~~~~~~~~~---h~~~v~~l~~s~~~~---~l~s~~-~dg~i~iwd~~~~~~-~~~~~~~~~  520 (860)
                      +.+.+.+  .+.+.+... ..+..++.   ...+-+|-...+++.   .++-.. ..+ ..++-...... ...+.....
T Consensus       142 vlt~~g~--v~~i~~~~~-~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~  217 (829)
T KOG2280|consen  142 VLTVSGQ--VILINGVEE-PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNS  217 (829)
T ss_pred             EEecCCc--EEEEcCCCc-chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCc
Confidence            4444322  233333322 12222221   111212222222221   111110 011 01111222211 112222346


Q ss_pred             CeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEec
Q 038577          521 DVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEG  559 (860)
Q Consensus       521 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  559 (860)
                      .+..+..||+.++|+--...|.|.+-+.+..+.+..+..
T Consensus       218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~  256 (829)
T KOG2280|consen  218 SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC  256 (829)
T ss_pred             eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence            788899999999999999999999999888877777664

>PHA02790 Kelch-like protein; Provisional

Probab=94.73  E-value=2.2  Score=46.44  Aligned_cols=188  Identities=9%  Similarity=-0.053  Sum_probs=87.3

Q ss_pred             CCCEEEEEEcC-----CeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEcc-CCcEEEEEccCceEEEEecCc
Q 038577          275 GLDMVVVGFSN-----GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK-LGQLLVWEWRSESYILKQQGH  348 (860)
Q Consensus       275 ~~~~l~~~~~~-----g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~g~i~v~d~~~~~~~~~~~~~  348 (860)
                      ++..+++|+.+     ..+..||..+.+-...-.............-+|...++++.+ ...+..||..+++......-.
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~  350 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL  350 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence            44556677654     356778877655433222222221222233456666666543 245788887766543322111


Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCeeEEE--eecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcccc
Q 038577          349 YFDVNCLAYSPDSQLLATGADDN---KVKVWTVSSGFCFVT--FTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRY  423 (860)
Q Consensus       349 ~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~  423 (860)
                      ..........-+|+..+.|+.++   .+..||..+..-...  +....... ++ ..-+++..+.|+   .+.+||..+.
T Consensus       351 ~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~GG---~~e~ydp~~~  425 (480)
T PHA02790        351 KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVGR---NAEFYCESSN  425 (480)
T ss_pred             CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEECC---ceEEecCCCC
Confidence            11111112223677777777653   467888765533221  11111111 22 223555555553   5678887654


Q ss_pred             ceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC----CeEEEEECCCCc
Q 038577          424 RNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS----FEIFVWSMKTGR  468 (860)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~i~v~d~~~~~  468 (860)
                      +=...-..+.+..-.+++ .-+|+..++|+.++    ..+..||..+++
T Consensus       426 ~W~~~~~m~~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        426 TWTLIDDPIYPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             cEeEcCCCCCCccccEEE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence            322211112211112222 23566666666442    145566655443

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=94.62  E-value=4.5  Score=38.86  Aligned_cols=263  Identities=11%  Similarity=-0.008  Sum_probs=137.9

Q ss_pred             CCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc---eEEEEecCcccCe
Q 038577          276 LDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE---SYILKQQGHYFDV  352 (860)
Q Consensus       276 ~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~---~~~~~~~~~~~~v  352 (860)
                      +++...+..+.-++++|+.+......+..-.-.-..-.+.-.|++..++.-++| +.+.|+.+.   ....+.......-
T Consensus        96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddg-fLivdvsdpssP~lagrya~~~~d~  174 (370)
T COG5276          96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDG-FLIVDVSDPSSPQLAGRYALPGGDT  174 (370)
T ss_pred             ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCc-EEEEECCCCCCceeeeeeccCCCCc
Confidence            456777778888999999876655444332222334455667888877765544 556666543   3333333334444


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCee---EEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEe
Q 038577          353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFC---FVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTF  429 (860)
Q Consensus       353 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~  429 (860)
                      ..++.|  |++-..+..|+-+.+.|+.....   +... .....+.++..+++..+++..  +--+.+-|..+.+....+
T Consensus       175 ~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~-n~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~~ssp~~~  249 (370)
T COG5276         175 HDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSY-NTGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSGPSSPTVF  249 (370)
T ss_pred             eeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEE-ecCCceEEEEecCCeeEEEEc--ccceEEEecCCCCCceEe
Confidence            566665  56777778899999999875432   2222 223367788777765444443  334666777666655544


Q ss_pred             eCCCCCcEEEE-EECCCCCEEEEEecCCCeEEEEECCCCc---eEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038577          430 TTPSSRQFVSL-ASDQSGEVICAGTLDSFEIFVWSMKTGR---LLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN  505 (860)
Q Consensus       430 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~i~v~d~~~~~---~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  505 (860)
                      ..-....+.+. .+.-.+++..+...+. -+.+.|..+..   ....+......-..+..+  +.++..+..+ +..+-+
T Consensus       250 gsyet~~p~~~s~v~Vs~~~~Yvadga~-gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yiadkn-~g~vV~  325 (370)
T COG5276         250 GSYETSNPVSISTVPVSGEYAYVADGAK-GLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYIADKN-TGAVVD  325 (370)
T ss_pred             eccccCCcccccceecccceeeeecccc-CceeEeccCCCCCchhccccCCCccccceEEe--cCeeEeccCC-ceEEEe
Confidence            43332222222 2223344444444444 34444443211   111111111112222221  2333333332 334445


Q ss_pred             ccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeC
Q 038577          506 VFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDP  548 (860)
Q Consensus       506 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  548 (860)
                      ....+...........+.+...+-+.+.+.+...++.+.+|+.
T Consensus       326 ~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~  368 (370)
T COG5276         326 ASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY  368 (370)
T ss_pred             CCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence            4443333333333334455555556668888888999999975

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=94.51  E-value=1.9  Score=43.01  Aligned_cols=168  Identities=11%  Similarity=0.087  Sum_probs=93.5

Q ss_pred             CeEEEEECCCCcEEeecc-C-----CccCeeEEEEcCCC----CEEEEEcC--CCcEEEEEcccCeEEEEeec-------
Q 038577           32 NRVSVTDLIKSKTVTLPV-E-----SSSNICRIAVSPDG----TFLLTVDE--NQRCHFINLHCHVVLHRVRF-------   92 (860)
Q Consensus        32 ~~i~v~d~~~~~~~~~~~-~-----h~~~v~~va~spdg----~~la~~~~--d~~i~vwd~~~~~~~~~~~~-------   92 (860)
                      -+|.+||+.+++..+... +     ..+.+..+++....    +..|..+.  .+-+.|+|+.+++..+...+       
T Consensus        34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~  113 (287)
T PF03022_consen   34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD  113 (287)
T ss_dssp             -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred             cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence            479999999999854321 1     23557778777622    23444332  46899999999887665541       


Q ss_pred             -------------CCceeEEEECC---CCCEEEEEeCCeEEEEeCCC-----CCcccce--eEEEEEeeccCCCeEEEEE
Q 038577           93 -------------KYPVNAILFSP---NGKYIAVGTGKLVQIWRSPG-----FKKEVFA--FELIRTLADCNDKVTALNW  149 (860)
Q Consensus        93 -------------~~~v~~~~fsp---dg~~la~~~~~~i~iwd~~~-----~~~~~~~--~~~~~~~~~h~~~v~~l~~  149 (860)
                                   ...+..++.+|   ||+.|....-..-.+|.+++     .......  ...+..+.........+++
T Consensus       114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~  193 (287)
T PF03022_consen  114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI  193 (287)
T ss_dssp             SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred             ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence                         23366677765   77778777444444444432     1100000  0011222111245678899


Q ss_pred             cCCCCeEEEeecCCeEEEEeecccccCcccccceEeec--C-CCcEEEEEEcc--CCC
Q 038577          150 SPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLG--H-RDSVVGCFFSV--DKK  202 (860)
Q Consensus       150 s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~--h-~~~i~~~~~~~--~~~  202 (860)
                      +++|...++--..+.|..|+.......   .....+..  . -..+.++.+.+  ++.
T Consensus       194 D~~G~ly~~~~~~~aI~~w~~~~~~~~---~~~~~l~~d~~~l~~pd~~~i~~~~~g~  248 (287)
T PF03022_consen  194 DPNGNLYFTDVEQNAIGCWDPDGPYTP---ENFEILAQDPRTLQWPDGLKIDPEGDGY  248 (287)
T ss_dssp             ETTTEEEEEECCCTEEEEEETTTSB-G---CCEEEEEE-CC-GSSEEEEEE-T--TS-
T ss_pred             CCCCcEEEecCCCCeEEEEeCCCCcCc---cchheeEEcCceeeccceeeeccccCce
Confidence            999998888888999999998874111   11122221  1 34677788877  554

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.47  E-value=5.1  Score=38.93  Aligned_cols=235  Identities=10%  Similarity=0.077  Sum_probs=126.1

Q ss_pred             eeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeec-----cCCCeEEEEEcCCCCe------------EE
Q 038577           96 VNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLAD-----CNDKVTALNWSPDSNY------------LL  157 (860)
Q Consensus        96 v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~s~d~~~------------l~  157 (860)
                      -..|+|+|.+.+-++. ..+...+||.........+..++..+..     .....+.+.|+....+            ++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            4679999988666655 7789999998722111112224444442     2345788888754333            56


Q ss_pred             EeecCCeEEEEeecccccCcccccceEee-cCCCc-EEEEEEccC--CCCCccceEEEEc-CCccEEEeeecCCCCCCcc
Q 038577          158 VGSKDLAVRLFYVKEKLKGIHTNKPFLLL-GHRDS-VVGCFFSVD--KKTDKVNRIYTIA-RDCYMFSWGFSGNDGKIDE  232 (860)
Q Consensus       158 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~-~h~~~-i~~~~~~~~--~~~~~~~~l~s~~-~dg~i~~w~~~~~~~~~~~  232 (860)
                      .+++||+|.-|...-....+. .....+. +..+. ...+++...  +.     +|+.+. ..++|.++|-.-.......
T Consensus       105 f~tEdGTisaW~p~v~~t~~~-~~~~~~d~s~~gavYkGLAi~~~~~~~-----~LYaadF~~g~IDVFd~~f~~~~~~g  178 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMT-RAEIVVDASQQGNVYKGLAVGPTGGGD-----YLYAANFRQGRIDVFKGSFRPPPLPG  178 (336)
T ss_pred             EEeCCceEEeecCcCCccccc-ccEEEEccCCCcceeeeeEEeecCCCc-----eEEEeccCCCceEEecCccccccCCC
Confidence            778999999998654411000 0112221 11233 345666543  33     566554 5788999976654322111


Q ss_pred             ccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeec--CceeE
Q 038577          233 TMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSIS--REKIT  310 (860)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~--~~~i~  310 (860)
                      ...++..+..-      ..+.++..    +..-.|+-..-.++...=+.|...|.|-+||. ++..++.+...  -....
T Consensus       179 ~F~DP~iPagy------APFnIqni----g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPW  247 (336)
T TIGR03118       179 SFIDPALPAGY------APFNVQNL----GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPW  247 (336)
T ss_pred             CccCCCCCCCC------CCcceEEE----CCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCc
Confidence            11111111111      11111110    00111222223344444445566689999998 67777766332  23445


Q ss_pred             EEEEee-----CCCEEEEEEccCCcEEEEEccCceEEEEecC
Q 038577          311 TAVFNE-----LGNWLVFGCAKLGQLLVWEWRSESYILKQQG  347 (860)
Q Consensus       311 ~~~~s~-----~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~  347 (860)
                      .++..|     -...|+++.--||+|..+|..+++.+..+..
T Consensus       248 G~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~  289 (336)
T TIGR03118       248 GLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLD  289 (336)
T ss_pred             eeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence            565544     2345566666679999999999888777654

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.29  E-value=0.4  Score=54.24  Aligned_cols=183  Identities=10%  Similarity=-0.014  Sum_probs=109.2

Q ss_pred             EEEecCCCCEEEEEEcCCeEEEEECCCc----------------eeEEEEeec-CceeEEEEEeeCCCEEEEEEccC-Cc
Q 038577          269 ACDYHRGLDMVVVGFSNGVFGLYQMPDF----------------VCIHLLSIS-REKITTAVFNELGNWLVFGCAKL-GQ  330 (860)
Q Consensus       269 ~~~~~~~~~~l~~~~~~g~i~~~~~~~~----------------~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~~~-g~  330 (860)
                      .++.++.-..++++...+.+.++-..+.                .....+..+ .-.+..+...+|+...++....+ -.
T Consensus        46 ~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~  125 (1405)
T KOG3630|consen   46 NLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEA  125 (1405)
T ss_pred             hhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCce
Confidence            3444555555666666665555543211                111222222 23566777778887776665553 36


Q ss_pred             EEEEEccCceEEE-----EecC------cccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEE
Q 038577          331 LLVWEWRSESYIL-----KQQG------HYFDVNCLAYSPDSQ-LLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALH  398 (860)
Q Consensus       331 i~v~d~~~~~~~~-----~~~~------~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~  398 (860)
                      |..||+++-....     .+..      ......++.|+|.-. ..++...|+.|++..+........-.......++++
T Consensus       126 v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~  205 (1405)
T KOG3630|consen  126 VYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVL  205 (1405)
T ss_pred             EEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEE
Confidence            7889987532211     1111      122356778887532 355667788888887653322222223566789999


Q ss_pred             EeeCCCEEEEEeCCCcEEEEEccccceeeEee---CCCCCcEEEEEECCCCCEEEEE
Q 038577          399 FMANNHSLLSASLDGTVRAWDLFRYRNFRTFT---TPSSRQFVSLASDQSGEVICAG  452 (860)
Q Consensus       399 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~  452 (860)
                      |+|.|+.++.|-..|++.-|... .+..+.+.   ......+.+++|-....++++-
T Consensus       206 WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  206 WSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             eccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence            99999999999999999988753 33223332   2234578888888777777653

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=94.20  E-value=9  Score=40.65  Aligned_cols=111  Identities=11%  Similarity=0.101  Sum_probs=62.4

Q ss_pred             ceecccccccccCCcEEEe-CCCEEEeee-CCeEEEEECCCCcEEee--cc-----CCccCeeEEEEcCCC------CEE
Q 038577            3 YRFQNLLGAPYRGGNAVLS-QNTKLISPV-GNRVSVTDLIKSKTVTL--PV-----ESSSNICRIAVSPDG------TFL   67 (860)
Q Consensus         3 ~~~~~~~g~~~~~~~~~~s-dg~~l~~~~-~~~i~v~d~~~~~~~~~--~~-----~h~~~v~~va~spdg------~~l   67 (860)
                      |+...+....-..-.++|. ||+.|++-. .++|++++..++.....  +.     ........|+++|+-      .+|
T Consensus        20 f~~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~l   99 (454)
T TIGR03606        20 FDKKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYV   99 (454)
T ss_pred             cEEEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEE
Confidence            3444333334444568999 998888876 59999998766543211  11     124668999999985      233


Q ss_pred             EEE--c--------CCCcEEEEEcccC-------eEE-EEee--cCCceeEEEECCCCCEEEEEeC
Q 038577           68 LTV--D--------ENQRCHFINLHCH-------VVL-HRVR--FKYPVNAILFSPNGKYIAVGTG  113 (860)
Q Consensus        68 a~~--~--------~d~~i~vwd~~~~-------~~~-~~~~--~~~~v~~~~fspdg~~la~~~~  113 (860)
                      ...  .        ....|.-|.+...       +.+ ..+.  ....-..|+|.|||.+.++.+|
T Consensus       100 Yvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD  165 (454)
T TIGR03606       100 YISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE  165 (454)
T ss_pred             EEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence            332  1        1234444544321       111 1111  1123457889999987776544

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.20  E-value=0.11  Score=56.94  Aligned_cols=90  Identities=17%  Similarity=0.311  Sum_probs=54.0

Q ss_pred             CcEEEEEccC--ceEEEEe-----cCcccCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEE
Q 038577          329 GQLLVWEWRS--ESYILKQ-----QGHYFDVNCLAYSP---DSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALH  398 (860)
Q Consensus       329 g~i~v~d~~~--~~~~~~~-----~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~  398 (860)
                      |.+.||++.-  |+....+     ......+.-+.|.|   +..++..+..++.+++.+.++... ..+.+|...+..++
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a  231 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA  231 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence            7888998753  3322222     22233345555554   556777788889999887764433 34455777766665


Q ss_pred             E-----------eeCCCEEEEEeCCCcEEEEE
Q 038577          399 F-----------MANNHSLLSASLDGTVRAWD  419 (860)
Q Consensus       399 ~-----------~~~~~~l~s~~~dg~i~~wd  419 (860)
                      +           +|||..++.+..||.+++|.
T Consensus       232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q  263 (1283)
T KOG1916|consen  232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ  263 (1283)
T ss_pred             HHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence            4           56666666666666666654

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=94.11  E-value=2.4  Score=45.78  Aligned_cols=93  Identities=13%  Similarity=0.146  Sum_probs=57.4

Q ss_pred             ECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCe
Q 038577          463 SMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQ  542 (860)
Q Consensus       463 d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  542 (860)
                      |+-.|.....+ .|.+.|.-+.....+..|..-...-.+.++|+.+.+....+    .-.+-+.|-|....++.-+.|. 
T Consensus       324 dli~g~~~~~i-nh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmil----nfcsymqwvp~sdvivaqn~dn-  397 (1636)
T KOG3616|consen  324 DLIGGQNEGFI-NHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMIL----NFCSYMQWVPGSDVIVAQNGDN-  397 (1636)
T ss_pred             ecccCcccccc-cccccccceeccchhhhhhcccccceeEEEEcccchHHHHH----HHhhhheeccCcceEEecCCCc-
Confidence            44444444333 38888887887776666766666667888998776522211    1245578888877777666665 


Q ss_pred             EEEE-eCCCCceeEEEeccc
Q 038577          543 IHFW-DPLNGELMYTIEGRR  561 (860)
Q Consensus       543 i~iw-d~~~~~~~~~~~~~~  561 (860)
                      +.|| ++.-.+.+..+....
T Consensus       398 l~iwyn~d~peqvt~~kikg  417 (1636)
T KOG3616|consen  398 LCIWYNIDAPEQVTMFKIKG  417 (1636)
T ss_pred             eEEEecCCcchhheeeEecc
Confidence            5555 566666655554443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.89  E-value=1.3  Score=45.55  Aligned_cols=148  Identities=16%  Similarity=0.251  Sum_probs=92.5

Q ss_pred             EEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCC--------CEEEEEeCCCcEEEEEccCCcc
Q 038577          440 LASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTN--------ATLASSSWDKTVRLWNVFEGKG  511 (860)
Q Consensus       440 ~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~--------~~l~s~~~dg~i~iwd~~~~~~  511 (860)
                      +....+..+++..+.....++-.|+..|+.+.....|...  -+.|.|+.        +.|+-.| +..|.-.|.+-...
T Consensus       473 mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gN  549 (776)
T COG5167         473 MLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGN  549 (776)
T ss_pred             eeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccccCC
Confidence            4455667777766555558899999999999999877765  46777753        2344444 55455555543221


Q ss_pred             eeEEcccCCCeEEEEEee----CCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEE
Q 038577          512 SVESFPHTHDVLTVVYRP----DGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTL  587 (860)
Q Consensus       512 ~~~~~~~~~~v~~~~~s~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l  587 (860)
                      .........-++.-.||.    ...++|+++..|.|++||--.-+....+++-                    +..|..+
T Consensus       550 Ki~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~l--------------------G~aIk~i  609 (776)
T COG5167         550 KIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGL--------------------GDAIKHI  609 (776)
T ss_pred             ceeeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCccc--------------------ccceeee
Confidence            222222222222223332    4558999999999999996443333333333                    3469999


Q ss_pred             EEecCCCEEEEecCCCeEEEEECC
Q 038577          588 CYSADGSYILAGGSSKYICMYDVA  611 (860)
Q Consensus       588 ~~s~~g~~l~~~~~dg~v~vwd~~  611 (860)
                      ..+.+|+++++.+.. ++.+-|++
T Consensus       610 dvta~Gk~ilaTCk~-yllL~d~~  632 (776)
T COG5167         610 DVTANGKHILATCKN-YLLLTDVP  632 (776)
T ss_pred             EeecCCcEEEEeecc-eEEEEecc
Confidence            999999999877654 46666654

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.88  E-value=6.1  Score=37.59  Aligned_cols=182  Identities=12%  Similarity=0.075  Sum_probs=113.5

Q ss_pred             cEEEe-CCCEEEeeeC-CeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEE-ee--
Q 038577           17 NAVLS-QNTKLISPVG-NRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHR-VR--   91 (860)
Q Consensus        17 ~~~~s-dg~~l~~~~~-~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~-~~--   91 (860)
                      .++-+ ||..-+++.+ +.|--.|..+|+......+....-..|..-|||..-++-+.. -|.-.|-++.+..+- +.  
T Consensus        66 dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~  144 (353)
T COG4257          66 DVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLE  144 (353)
T ss_pred             ccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccc
Confidence            35666 8876666655 457777999999988888888888999999999866654322 455556555543321 11  


Q ss_pred             -cCCceeEEEECCCCCEEEEEe----------CCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEee
Q 038577           92 -FKYPVNAILFSPNGKYIAVGT----------GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGS  160 (860)
Q Consensus        92 -~~~~v~~~~fspdg~~la~~~----------~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~  160 (860)
                       .........|.++|.+-.++.          .+.|++|+...+.                 .-..|+..|||..-++.-
T Consensus       145 ~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~-----------------gpyGi~atpdGsvwyasl  207 (353)
T COG4257         145 HADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGG-----------------GPYGICATPDGSVWYASL  207 (353)
T ss_pred             cCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCC-----------------CCcceEECCCCcEEEEec
Confidence             345688899999999888872          3466777665433                 236788889998777766


Q ss_pred             cCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecC
Q 038577          161 KDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSG  225 (860)
Q Consensus       161 ~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  225 (860)
                      .+..|-.-|...+ ..   .....-......-..+.-+|-+.     .-++....+.+..+|...
T Consensus       208 agnaiaridp~~~-~a---ev~p~P~~~~~gsRriwsdpig~-----~wittwg~g~l~rfdPs~  263 (353)
T COG4257         208 AGNAIARIDPFAG-HA---EVVPQPNALKAGSRRIWSDPIGR-----AWITTWGTGSLHRFDPSV  263 (353)
T ss_pred             cccceEEcccccC-Cc---ceecCCCcccccccccccCccCc-----EEEeccCCceeeEeCccc
Confidence            6666666665554 11   11111111122223344445554     555555556666666554

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.84  E-value=0.32  Score=45.99  Aligned_cols=65  Identities=12%  Similarity=0.045  Sum_probs=52.1

Q ss_pred             EcCCCCEEEEEcCCCcEEEEEcccCeEEEEe---------------ecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCC
Q 038577           60 VSPDGTFLLTVDENQRCHFINLHCHVVLHRV---------------RFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGF  124 (860)
Q Consensus        60 ~spdg~~la~~~~d~~i~vwd~~~~~~~~~~---------------~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~  124 (860)
                      +..++.+|.+.+.+|.+++||+.+++.+..-               .....|..+.++.+|.-|++-.+|..+.|+.+-+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~   97 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG   97 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence            5567889999999999999999998876554               1235688888898898888888888888886643

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.76  E-value=4.7  Score=36.58  Aligned_cols=162  Identities=11%  Similarity=0.107  Sum_probs=92.9

Q ss_pred             CcEEEEEccCceEEEEecCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEE
Q 038577          329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQ-LLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLL  407 (860)
Q Consensus       329 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  407 (860)
                      ..|++||+.+++.+....-....+..=-...-|. +-+..-.+|.-..+|.++-+++..+. ..+.=+.++  .|+..|+
T Consensus        68 S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeGWgLt--~d~~~Li  144 (262)
T COG3823          68 SKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEGWGLT--SDDKNLI  144 (262)
T ss_pred             ceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcceeee--cCCcceE
Confidence            6799999999887766532211121111111122 22334567888899988887777664 334445555  3555677


Q ss_pred             EEeCCCcEEEEEccccceeeEeeCCCCC----cEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec---------
Q 038577          408 SASLDGTVRAWDLFRYRNFRTFTTPSSR----QFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS---------  474 (860)
Q Consensus       408 s~~~dg~i~~wd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~---------  474 (860)
                      .+....+++.-|..+.....++......    .+..+.+ -+|...|-.-... .|...|.++|+.+..+.         
T Consensus       145 msdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~-~I~rI~p~sGrV~~widlS~L~~~~~  222 (262)
T COG3823         145 MSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTT-RIARIDPDSGRVVAWIDLSGLLKELN  222 (262)
T ss_pred             eeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeec-ceEEEcCCCCcEEEEEEccCCchhcC
Confidence            7766667888787765554443322111    1112222 1444444444444 67777778887766543         


Q ss_pred             ---CcccCeEEEEEcCCC-CEEEEE
Q 038577          475 ---GHEGPVHGLVFSPTN-ATLASS  495 (860)
Q Consensus       475 ---~h~~~v~~l~~s~~~-~~l~s~  495 (860)
                         .|..-.+.+++.|++ +++++|
T Consensus       223 ~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         223 LDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             ccccccccccceeecCcCCeEEEec
Confidence               244567889999987 445554

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.64  E-value=2  Score=48.53  Aligned_cols=96  Identities=16%  Similarity=0.114  Sum_probs=58.9

Q ss_pred             cCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCC-CceeEEEecccccCCCccccccccccccCCCCcEEEEEEecC---C
Q 038577          518 HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLN-GELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSAD---G  593 (860)
Q Consensus       518 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~---g  593 (860)
                      ..-.|..+.++|+|++|+..+..| |.|-.+.. .-....+.+.......+..........+..+..|..+.|.|.   +
T Consensus        83 ~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~  161 (717)
T PF10168_consen   83 PLFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD  161 (717)
T ss_pred             CceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence            445789999999999999999876 45544432 111111211111111111111111222334557999999997   4


Q ss_pred             CEEEEecCCCeEEEEECCCce
Q 038577          594 SYILAGGSSKYICMYDVADQV  614 (860)
Q Consensus       594 ~~l~~~~~dg~v~vwd~~~~~  614 (860)
                      ..|++-.+|+++++||+....
T Consensus       162 ~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  162 SHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             CeEEEEecCCEEEEEecCCCC
Confidence            799999999999999997643

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.38  E-value=0.077  Score=57.93  Aligned_cols=99  Identities=17%  Similarity=0.297  Sum_probs=61.0

Q ss_pred             cCCceeEEEEC----CCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcC---CCCeEEEeecCCe
Q 038577           92 FKYPVNAILFS----PNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSP---DSNYLLVGSKDLA  164 (860)
Q Consensus        92 ~~~~v~~~~fs----pdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~---d~~~l~s~~~dg~  164 (860)
                      +.+.|-.++|-    |.+..    .-|.+.||++.--+....+-..+.........+.-+.|.|   +..++..+-.+++
T Consensus       131 f~G~v~dl~fah~~~pk~~~----~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~  206 (1283)
T KOG1916|consen  131 FPGGVGDLQFAHTKCPKGRR----LVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE  206 (1283)
T ss_pred             CCCCcccccccccCChHHHH----HhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence            57788888884    33332    2367889988753333333223333333344445555554   5567777778889


Q ss_pred             EEEEeecccccCcccccceEeecCCCcEEEEEEccCC
Q 038577          165 VRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDK  201 (860)
Q Consensus       165 v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~  201 (860)
                      +++......       ....+.+|...+..++|...|
T Consensus       207 i~lL~~~ra-------~~~l~rsHs~~~~d~a~~~~g  236 (1283)
T KOG1916|consen  207 IRLLNINRA-------LRSLFRSHSQRVTDMAFFAEG  236 (1283)
T ss_pred             eeEeeechH-------HHHHHHhcCCCcccHHHHhhc
Confidence            988887765       224556688888888776555

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=93.03  E-value=11  Score=37.74  Aligned_cols=136  Identities=18%  Similarity=0.274  Sum_probs=86.6

Q ss_pred             cEEEEEccccceeeEeeCCC-----CCcEEEEEECCCC-----CEEEEEecCCCeEEEEECCCCceEEEecCc-------
Q 038577          414 TVRAWDLFRYRNFRTFTTPS-----SRQFVSLASDQSG-----EVICAGTLDSFEIFVWSMKTGRLLDILSGH-------  476 (860)
Q Consensus       414 ~i~~wd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-----~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h-------  476 (860)
                      +|.+||+.+.+.++.+..+.     ...+..+.++...     .++.++......|.+||+.+++..+.+..+       
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            68889999999888877653     3457777776632     466677666668999999998776665432       


Q ss_pred             ------------ccCeEEEEEcC---CCCEEEEEeCCCcEEEEEccCC-----c----c----eeEEccc-CCCeEEEEE
Q 038577          477 ------------EGPVHGLVFSP---TNATLASSSWDKTVRLWNVFEG-----K----G----SVESFPH-THDVLTVVY  527 (860)
Q Consensus       477 ------------~~~v~~l~~s~---~~~~l~s~~~dg~i~iwd~~~~-----~----~----~~~~~~~-~~~v~~~~~  527 (860)
                                  ...+..++.+|   ++++|......+ -++|.+.+.     .    .    ..+..+. ......+++
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~  193 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI  193 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence                        12366667665   666676655443 234443221     1    0    1112222 246677899


Q ss_pred             eeCCCEEEEEeCCCeEEEEeCCC
Q 038577          528 RPDGRQLACSTLDGQIHFWDPLN  550 (860)
Q Consensus       528 s~~~~~l~~~~~dg~i~iwd~~~  550 (860)
                      +++|.+.++--..+.|..|+..+
T Consensus       194 D~~G~ly~~~~~~~aI~~w~~~~  216 (287)
T PF03022_consen  194 DPNGNLYFTDVEQNAIGCWDPDG  216 (287)
T ss_dssp             ETTTEEEEEECCCTEEEEEETTT
T ss_pred             CCCCcEEEecCCCCeEEEEeCCC
Confidence            99999888888899999999876

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=93.01  E-value=13  Score=38.88  Aligned_cols=107  Identities=9%  Similarity=0.066  Sum_probs=62.5

Q ss_pred             CCceEEEEecCCCCEEEEEEcCCeEEEEECCCce-----eEEEEee--cCceeEEEEEeeCCCEEEEEEccCCcEEEEEc
Q 038577          264 PSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFV-----CIHLLSI--SREKITTAVFNELGNWLVFGCAKLGQLLVWEW  336 (860)
Q Consensus       264 ~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~-----~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~  336 (860)
                      ...+..+.+.+++..++++ ..|.+.. ....++     .......  ....+..+.|.+++..++++..  |.+.... 
T Consensus       280 ~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~--G~v~~s~-  354 (398)
T PLN00033        280 ARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGS--GILLRST-  354 (398)
T ss_pred             ccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECC--CcEEEeC-
Confidence            4568889999998877666 4455433 333333     2222222  2235888999988877666543  6665553 


Q ss_pred             cCceEEEEe---cCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038577          337 RSESYILKQ---QGHYFDVNCLAYSPDSQLLATGADDNKVKVW  376 (860)
Q Consensus       337 ~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  376 (860)
                      ..++.-...   ..-....+.+.|.++++-+++| .+|.|.-|
T Consensus       355 D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~  396 (398)
T PLN00033        355 DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY  396 (398)
T ss_pred             CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence            333322221   2234567889988877666655 45776554

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=92.98  E-value=12  Score=38.36  Aligned_cols=196  Identities=16%  Similarity=0.157  Sum_probs=105.4

Q ss_pred             CEEEeee--CCeEEEEECCCCcEEeeccCCccCe---eEEEEcCCCCE--EEEEcC-C---CcEEEEEcc--cCeEEEEe
Q 038577           24 TKLISPV--GNRVSVTDLIKSKTVTLPVESSSNI---CRIAVSPDGTF--LLTVDE-N---QRCHFINLH--CHVVLHRV   90 (860)
Q Consensus        24 ~~l~~~~--~~~i~v~d~~~~~~~~~~~~h~~~v---~~va~spdg~~--la~~~~-d---~~i~vwd~~--~~~~~~~~   90 (860)
                      +.++.+.  .+-+.+||+...+...+..+.-..|   ..+.+  +|+.  ||.++. +   .+|.+|.+.  ++. +..+
T Consensus        68 kSlIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~v  144 (381)
T PF02333_consen   68 KSLIIGTDKKGGLYVYDLDGKELQSLPVGRPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTDV  144 (381)
T ss_dssp             G-EEEEEETTTEEEEEETTS-EEEEE-SS-EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE-
T ss_pred             cceEEEEeCCCCEEEEcCCCcEEEeecCCCcceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceEc
Confidence            3344443  3569999999888877755544333   22333  4443  455443 2   569999775  443 3333


Q ss_pred             e-c-------CCceeEEEE--CC-CCCEEEEE--eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEE
Q 038577           91 R-F-------KYPVNAILF--SP-NGKYIAVG--TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLL  157 (860)
Q Consensus        91 ~-~-------~~~v~~~~f--sp-dg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~  157 (860)
                      . .       -..+..+|+  +| +|++.|..  .+|.+.-|.+...........+++.+.. ...+..++......+|+
T Consensus       145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LY  223 (381)
T PF02333_consen  145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLY  223 (381)
T ss_dssp             CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEE
T ss_pred             CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEE
Confidence            2 1       123566666  44 56665555  6688888887533222233456777765 34788889988888999


Q ss_pred             EeecCCeEEEEeecccccCcccccceEee--cCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecC
Q 038577          158 VGSKDLAVRLFYVKEKLKGIHTNKPFLLL--GHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSG  225 (860)
Q Consensus       158 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~--~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~  225 (860)
                      .+-++.-|.-|+.+.. ............  +....|..+++-.... .....|+|.-.+++..+|+.+.
T Consensus       224 vgEE~~GIW~y~Aep~-~~~~~~~v~~~~g~~l~aDvEGlaly~~~~-g~gYLivSsQG~~sf~Vy~r~~  291 (381)
T PF02333_consen  224 VGEEDVGIWRYDAEPE-GGNDRTLVASADGDGLVADVEGLALYYGSD-GKGYLIVSSQGDNSFAVYDREG  291 (381)
T ss_dssp             EEETTTEEEEEESSCC-C-S--EEEEEBSSSSB-S-EEEEEEEE-CC-C-EEEEEEEGGGTEEEEEESST
T ss_pred             EecCccEEEEEecCCC-CCCcceeeecccccccccCccceEEEecCC-CCeEEEEEcCCCCeEEEEecCC
Confidence            9988876666666543 111111111122  2456788888754321 1122455555677899998875

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.97  E-value=0.44  Score=30.61  Aligned_cols=32  Identities=16%  Similarity=0.315  Sum_probs=26.6

Q ss_pred             cCeeEEEEcCCC---CEEEEEcCCCcEEEEEcccC
Q 038577           53 SNICRIAVSPDG---TFLLTVDENQRCHFINLHCH   84 (860)
Q Consensus        53 ~~v~~va~spdg---~~la~~~~d~~i~vwd~~~~   84 (860)
                      +.|.++.|||+.   .+||.+-..+.|.|+|+.++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468999999854   58888888899999999853

It contains a characteristic DLL sequence motif.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=92.85  E-value=6.1  Score=37.81  Aligned_cols=142  Identities=13%  Similarity=0.156  Sum_probs=80.2

Q ss_pred             EEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeC-C--CcEEEEECCC---CeeEEEe---ecCCCceEEEEEee
Q 038577          331 LLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGAD-D--NKVKVWTVSS---GFCFVTF---TEHTNAVTALHFMA  401 (860)
Q Consensus       331 i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d--g~i~iwd~~~---~~~~~~~---~~~~~~v~~i~~~~  401 (860)
                      -.+||+.+++..........-+.+-++.+||+.+.+|+. +  ..+++++...   .....+.   -.....-......+
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            457888887654432222323334457789999998876 2  3578887654   1111111   01122233445568


Q ss_pred             CCCEEEEEeCCCc-EEEEEcccc-ceeeEe--e-----CCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEE
Q 038577          402 NNHSLLSASLDGT-VRAWDLFRY-RNFRTF--T-----TPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDI  472 (860)
Q Consensus       402 ~~~~l~s~~~dg~-i~~wd~~~~-~~~~~~--~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~  472 (860)
                      ||+.++.||.... ..+|.-... .....+  .     .....-...+...|+|++++.+..+   -.+||..+.+.++.
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~---s~i~d~~~n~v~~~  204 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG---SIIYDYKTNTVVRT  204 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC---cEEEeCCCCeEEee
Confidence            9999999988753 344443211 111111  1     0112233467788999999888865   46778888877666


Q ss_pred             ecC
Q 038577          473 LSG  475 (860)
Q Consensus       473 ~~~  475 (860)
                      +..
T Consensus       205 lP~  207 (243)
T PF07250_consen  205 LPD  207 (243)
T ss_pred             CCC
Confidence            654

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=92.79  E-value=18  Score=39.86  Aligned_cols=250  Identities=11%  Similarity=0.102  Sum_probs=121.5

Q ss_pred             ecCCCCEEEEEEcCCeEEEEECCCcee---EEEEeecCceeEEEEEeeCC-CEEEEEEc-cCCcEEEEEccCceEEEEec
Q 038577          272 YHRGLDMVVVGFSNGVFGLYQMPDFVC---IHLLSISREKITTAVFNELG-NWLVFGCA-KLGQLLVWEWRSESYILKQQ  346 (860)
Q Consensus       272 ~~~~~~~l~~~~~~g~i~~~~~~~~~~---~~~~~~~~~~i~~~~~s~~~-~~l~~~~~-~~g~i~v~d~~~~~~~~~~~  346 (860)
                      ...++..++.+..+|.+....+.....   +..+..-.....++.+-.+| ..+++++. .|+.+..|....-+.+..+.
T Consensus       218 ~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~  297 (504)
T PF10433_consen  218 YDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP  297 (504)
T ss_dssp             SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-
T ss_pred             ecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc
Confidence            456778899999999999988765441   12221113455677777776 24444433 34556666644445555544


Q ss_pred             CcccCeEEEEEcCC----CC------EEEEEe---CCCcEEEEECCCCee--EEEeecCC--CceEEEEEee-CCCEEEE
Q 038577          347 GHYFDVNCLAYSPD----SQ------LLATGA---DDNKVKVWTVSSGFC--FVTFTEHT--NAVTALHFMA-NNHSLLS  408 (860)
Q Consensus       347 ~~~~~v~~~~~s~~----~~------~l~~~~---~dg~i~iwd~~~~~~--~~~~~~~~--~~v~~i~~~~-~~~~l~s  408 (860)
                       .-++|..+++.+.    ..      .+++++   .+|.+++..-.-+-.  ......-.  ..++.+.... +..+++.
T Consensus       298 -N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~  376 (504)
T PF10433_consen  298 -NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVL  376 (504)
T ss_dssp             ----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEE
T ss_pred             -CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEE
Confidence             3467888887531    11      555554   367888875322211  11222222  2333333222 1346666


Q ss_pred             EeCCCcEEEEEcc---ccceeeEeeC---CC-CCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC-cccCe
Q 038577          409 ASLDGTVRAWDLF---RYRNFRTFTT---PS-SRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG-HEGPV  480 (860)
Q Consensus       409 ~~~dg~i~~wd~~---~~~~~~~~~~---~~-~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~-h~~~v  480 (860)
                      +..+ .-+++.+.   ....+.....   .. ...+.+..+.  +..++=.+..  .|++.+...++....... ....|
T Consensus       377 S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~--~i~l~~~~~~~~~~~w~~~~~~~I  451 (504)
T PF10433_consen  377 SFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPK--GIRLIDLEDGKLTQEWKPPAGSII  451 (504)
T ss_dssp             EESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESS--EEEEEESSSTSEEEEEE-TTS---
T ss_pred             EcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecC--eEEEEECCCCeEEEEEeCCCCCeE
Confidence            6554 44555553   2222222211   11 1112222222  3333333333  588888887777766532 34455


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc-----ccCCCeEEEEEee
Q 038577          481 HGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF-----PHTHDVLTVVYRP  529 (860)
Q Consensus       481 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~s~  529 (860)
                      .+.+.  ++.+++.+-.++.+..+.+..........     .....|.++..+|
T Consensus       452 ~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  452 VAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP  503 (504)
T ss_dssp             SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred             EEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence            55555  44667777778889999987776433322     2567788887766

...

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.65  E-value=3.4  Score=42.78  Aligned_cols=145  Identities=12%  Similarity=0.088  Sum_probs=91.3

Q ss_pred             eeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCC-------EEEEEeCCCcEEEEECCC-CeeEEE
Q 038577          315 NELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQ-------LLATGADDNKVKVWTVSS-GFCFVT  386 (860)
Q Consensus       315 s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~~~~~dg~i~iwd~~~-~~~~~~  386 (860)
                      ..+...+...+.....++-.|++.|+.+..+..|...  -+.|.|+.+       .-++|-.+..|.-.|.+- |..+..
T Consensus       476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v  553 (776)
T COG5167         476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV  553 (776)
T ss_pred             cCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee
Confidence            3455555555555578888999999999998877664  567777432       233455555665556542 322221


Q ss_pred             ee--c--CCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEE
Q 038577          387 FT--E--HTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVW  462 (860)
Q Consensus       387 ~~--~--~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~  462 (860)
                      ..  .  ......+..-.. ..+++.++..|.|++||--. ...++....-...+..+..+.+|+++++.+..  .+.+.
T Consensus       554 ~esKdY~tKn~Fss~~tTe-sGyIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~--yllL~  629 (776)
T COG5167         554 VESKDYKTKNKFSSGMTTE-SGYIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATCKN--YLLLT  629 (776)
T ss_pred             eeehhcccccccccccccc-CceEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEeecc--eEEEE
Confidence            11  0  112222332233 34899999999999999543 33333333445578889999999999988876  67777


Q ss_pred             ECC
Q 038577          463 SMK  465 (860)
Q Consensus       463 d~~  465 (860)
                      |+.
T Consensus       630 d~~  632 (776)
T COG5167         630 DVP  632 (776)
T ss_pred             ecc
Confidence            765

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=92.58  E-value=15  Score=38.53  Aligned_cols=53  Identities=11%  Similarity=0.118  Sum_probs=25.5

Q ss_pred             CCCEEEEEeCC-----------CcEEEEECCCCeeEEEeecCCCce--EEEEEeeCCCEEEEEeCC
Q 038577          360 DSQLLATGADD-----------NKVKVWTVSSGFCFVTFTEHTNAV--TALHFMANNHSLLSASLD  412 (860)
Q Consensus       360 ~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~v--~~i~~~~~~~~l~s~~~d  412 (860)
                      ++.+.+.|+..           ..+..||..+..-...-.......  .+.....+++..+.||.+
T Consensus        84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~  149 (376)
T PRK14131         84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN  149 (376)
T ss_pred             CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence            56666777643           247778876653222111001111  111221466777777754

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=92.58  E-value=5.6  Score=33.44  Aligned_cols=108  Identities=10%  Similarity=0.062  Sum_probs=70.2

Q ss_pred             EEEcCCCCEEEEEcCCCcEEEEEccc--------CeEEEEeecCCceeEEEECC-----CCCEEEEEeCCeEEEEeCCCC
Q 038577           58 IAVSPDGTFLLTVDENQRCHFINLHC--------HVVLHRVRFKYPVNAILFSP-----NGKYIAVGTGKLVQIWRSPGF  124 (860)
Q Consensus        58 va~spdg~~la~~~~d~~i~vwd~~~--------~~~~~~~~~~~~v~~~~fsp-----dg~~la~~~~~~i~iwd~~~~  124 (860)
                      -.|......|+.++..|.|.|.+...        ...++.+.....|++++-.|     +...|.+|....+..||+...
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N   83 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENN   83 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccC
Confidence            34555556788888889999998663        34566677788888886543     457899999999999999876


Q ss_pred             CcccceeEEEEEeeccCCCeEEEEEcC---CCCeEEEeecCCeEEEEeeccc
Q 038577          125 KKEVFAFELIRTLADCNDKVTALNWSP---DSNYLLVGSKDLAVRLFYVKEK  173 (860)
Q Consensus       125 ~~~~~~~~~~~~~~~h~~~v~~l~~s~---d~~~l~s~~~dg~v~vwd~~~~  173 (860)
                      ...        -.+.-.+.|.++.+-.   ...-|+..+.+..|.-+|.+..
T Consensus        84 ~d~--------Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~  127 (136)
T PF14781_consen   84 SDL--------FYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN  127 (136)
T ss_pred             chh--------hhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence            531        1223346677776632   1223444444556666665543

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=92.32  E-value=16  Score=37.99  Aligned_cols=53  Identities=13%  Similarity=0.167  Sum_probs=26.3

Q ss_pred             CCCEEEEEeCC-----------CcEEEEECCCCeeEEEeecCCCceEEE-EE-eeCCCEEEEEeCC
Q 038577          360 DSQLLATGADD-----------NKVKVWTVSSGFCFVTFTEHTNAVTAL-HF-MANNHSLLSASLD  412 (860)
Q Consensus       360 ~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~v~~i-~~-~~~~~~l~s~~~d  412 (860)
                      ++++.+.|+.+           ..+..||..+..-.............. +. .-+++..+.||.+
T Consensus        63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~  128 (346)
T TIGR03547        63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN  128 (346)
T ss_pred             CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence            56677777753           246778876654322111111111111 11 3467777777764

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=92.31  E-value=14  Score=37.32  Aligned_cols=100  Identities=12%  Similarity=0.086  Sum_probs=62.9

Q ss_pred             CCCEEEeeeCCeEEEEECCC--CcEEeeccCCccCeeEEEEcCCCCEEEEEcC-CCcEEEEEcccCeE------------
Q 038577           22 QNTKLISPVGNRVSVTDLIK--SKTVTLPVESSSNICRIAVSPDGTFLLTVDE-NQRCHFINLHCHVV------------   86 (860)
Q Consensus        22 dg~~l~~~~~~~i~v~d~~~--~~~~~~~~~h~~~v~~va~spdg~~la~~~~-d~~i~vwd~~~~~~------------   86 (860)
                      ++++|+.|++..|.+.++..  ++....+  +...|+++.+.+.-+.|++.+. ...++++++..-..            
T Consensus        12 ~~~~lL~GTe~Gly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~   89 (302)
T smart00036       12 DGKWLLVGTEEGLYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVI   89 (302)
T ss_pred             CCcEEEEEeCCceEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccc
Confidence            55799999998888888765  3444443  6779999999998888877653 34599999843221            


Q ss_pred             ----EEEeecCCceeEEEEC--CCCCEEEEEeCCeEEEEeCCC
Q 038577           87 ----LHRVRFKYPVNAILFS--PNGKYIAVGTGKLVQIWRSPG  123 (860)
Q Consensus        87 ----~~~~~~~~~v~~~~fs--pdg~~la~~~~~~i~iwd~~~  123 (860)
                          ...+.+.....-.+..  +.-.+++++....|.++.+..
T Consensus        90 ~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~  132 (302)
T smart00036       90 RKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYN  132 (302)
T ss_pred             cccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccC
Confidence                1222233322222332  222345555677888876543

Unpublished observations.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.16  E-value=4.3  Score=44.65  Aligned_cols=130  Identities=12%  Similarity=0.124  Sum_probs=75.8

Q ss_pred             EEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEe-ecCCCcEEEEEE--ccCCCCCccceEE
Q 038577          134 IRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLL-LGHRDSVVGCFF--SVDKKTDKVNRIY  210 (860)
Q Consensus       134 ~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~-~~h~~~i~~~~~--~~~~~~~~~~~l~  210 (860)
                      ...+..--.....+.-|.-++..++-+....+.|||...+      .....- -...+.|..+.|  .|+++     .++
T Consensus        22 t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~------~lE~~~~f~~~~~I~dLDWtst~d~q-----siL   90 (631)
T PF12234_consen   22 TSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSG------VLEYEESFSEDDPIRDLDWTSTPDGQ-----SIL   90 (631)
T ss_pred             EEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCc------EEEEeeeecCCCceeeceeeecCCCC-----EEE
Confidence            3344333344555555555554444444567999999887      222111 155788999988  56777     899


Q ss_pred             EEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCC-CCceEEEEecCCCCEEEEEEcCCeEE
Q 038577          211 TIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQA-PSKVTACDYHRGLDMVVVGFSNGVFG  289 (860)
Q Consensus       211 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~g~i~  289 (860)
                      +.|....|.++.-.....           ...      ...|..........+ +.+|....|.++|..++. + .+.+.
T Consensus        91 aVGf~~~v~l~~Q~R~dy-----------~~~------~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~-s-GNqlf  151 (631)
T PF12234_consen   91 AVGFPHHVLLYTQLRYDY-----------TNK------GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVG-S-GNQLF  151 (631)
T ss_pred             EEEcCcEEEEEEccchhh-----------hcC------CcccceeEEEEeecCCCCCccceeEecCCeEEEE-e-CCEEE
Confidence            999999999986432110           000      013333333322232 257889999999865443 3 34567


Q ss_pred             EEEC
Q 038577          290 LYQM  293 (860)
Q Consensus       290 ~~~~  293 (860)
                      +++-
T Consensus       152 v~dk  155 (631)
T PF12234_consen  152 VFDK  155 (631)
T ss_pred             EECC
Confidence            7664

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=91.96  E-value=3.2  Score=39.67  Aligned_cols=138  Identities=15%  Similarity=0.172  Sum_probs=78.0

Q ss_pred             EEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCC---CcEEEEEccc----CeEE---EEeecCCceeEEEECC
Q 038577           34 VSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDEN---QRCHFINLHC----HVVL---HRVRFKYPVNAILFSP  103 (860)
Q Consensus        34 i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d---~~i~vwd~~~----~~~~---~~~~~~~~v~~~~fsp  103 (860)
                      -.+||+.+++.........-...+=++-|||++|.+|+..   ..+++++..+    ..-.   ..+.....-....--|
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            5699999999877665444444555788999999988652   4577776543    1111   1122233344455577


Q ss_pred             CCCEEEEEeC--CeEEEEeCCCCCcccceeEEEEEee--ccCCCeEEEEEcCCCCeEEEeecCCeEEEEeeccc
Q 038577          104 NGKYIAVGTG--KLVQIWRSPGFKKEVFAFELIRTLA--DCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEK  173 (860)
Q Consensus       104 dg~~la~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~  173 (860)
                      ||+.|++|+.  ....+|...........+.......  .....--.+...|||+.++.+..+  -.|||..+.
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n  199 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTN  199 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCC
Confidence            9999999833  3445555432211111111111111  111122345668999988888765  456677766

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=91.96  E-value=4.5  Score=43.86  Aligned_cols=70  Identities=13%  Similarity=0.218  Sum_probs=47.7

Q ss_pred             CccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEeCCeEEEEeC
Q 038577           51 SSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRS  121 (860)
Q Consensus        51 h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~~~~i~iwd~  121 (860)
                      ....++++.-+|.|+-++.+..||.|+++++.....-.......|-..+.|...|-+.++ +|..+.-|.-
T Consensus        13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhgl~~~t-sdrr~la~~~   82 (1636)
T KOG3616|consen   13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHGLVTAT-SDRRALAWKE   82 (1636)
T ss_pred             ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccceEEEe-ccchhheeec
Confidence            345578888889999999999999999999887655333334455566777665544433 4555555543

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=91.79  E-value=0.016  Score=58.50  Aligned_cols=148  Identities=16%  Similarity=0.207  Sum_probs=105.0

Q ss_pred             eEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEec
Q 038577          267 VTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQ  346 (860)
Q Consensus       267 v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~  346 (860)
                      .....|-|.+.-+++++.+..+..||-... ..... ...+....++|..+|..+++.....+.+.+||+.+......-.
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~agq-~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~  114 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQ-VILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES  114 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhhcc-eeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence            344566777777999999988888886322 22222 2334566788999999988888888999999987653222111


Q ss_pred             CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 038577          347 GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRA  417 (860)
Q Consensus       347 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~  417 (860)
                      +....-.-+.|++.+..++.+...|.+.+++..+.+.+.....|...++++++.+.+ +.+.++.|..+.+
T Consensus       115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v  184 (615)
T KOG2247|consen  115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLSV  184 (615)
T ss_pred             cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHHHH
Confidence            211122237899999999999999999999998877777776699999999999877 5566666655443

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.74  E-value=0.89  Score=29.25  Aligned_cols=31  Identities=23%  Similarity=0.354  Sum_probs=26.2

Q ss_pred             CCeEEEEEeeCCC---EEEEEeCCCeEEEEeCCC
Q 038577          520 HDVLTVVYRPDGR---QLACSTLDGQIHFWDPLN  550 (860)
Q Consensus       520 ~~v~~~~~s~~~~---~l~~~~~dg~i~iwd~~~  550 (860)
                      +.+.++.|||+..   +|+.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4688999998554   888888889999999985

It contains a characteristic DLL sequence motif.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=91.72  E-value=17  Score=37.18  Aligned_cols=116  Identities=19%  Similarity=0.289  Sum_probs=71.5

Q ss_pred             CeeEEEEcCCCCEEEEEcCC------CcEEEEEcccCeEEEEee----------------cCCceeEEEECCCCCEEEEE
Q 038577           54 NICRIAVSPDGTFLLTVDEN------QRCHFINLHCHVVLHRVR----------------FKYPVNAILFSPNGKYIAVG  111 (860)
Q Consensus        54 ~v~~va~spdg~~la~~~~d------~~i~vwd~~~~~~~~~~~----------------~~~~v~~~~fspdg~~la~~  111 (860)
                      ..-+|++.++|.++++.-.+      ..|..++.. |+.+..+.                ......+|+++|||+.|.++
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence            34588888899988887666      788888866 66655442                23457899999999965555


Q ss_pred             ------eCC--e-------EEEE--eCCCCCcccceeEEEEEeec-----cCCCeEEEEEcCCCCeEEEe-----ecCCe
Q 038577          112 ------TGK--L-------VQIW--RSPGFKKEVFAFELIRTLAD-----CNDKVTALNWSPDSNYLLVG-----SKDLA  164 (860)
Q Consensus       112 ------~~~--~-------i~iw--d~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~s~d~~~l~s~-----~~dg~  164 (860)
                            .++  .       ++++  |..+....  ..+....+..     ....|..+.+-+++++|+.=     +....
T Consensus       165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~--~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~  242 (326)
T PF13449_consen  165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEP--VAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNY  242 (326)
T ss_pred             ECccccCCCcccccccCceEEEEEecCCCCCcc--ceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccce
Confidence                  222  1       4554  44432211  1112223332     45678999999999877652     13445


Q ss_pred             EEEEeecc
Q 038577          165 VRLFYVKE  172 (860)
Q Consensus       165 v~vwd~~~  172 (860)
                      ++|+.+..
T Consensus       243 ~ri~~v~l  250 (326)
T PF13449_consen  243 KRIYRVDL  250 (326)
T ss_pred             EEEEEEEc
Confidence            66666553

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=91.60  E-value=15  Score=42.62  Aligned_cols=87  Identities=9%  Similarity=-0.017  Sum_probs=56.1

Q ss_pred             cCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEE-ecccccCCCccccccccccccCCCCcEEEEEEecCCCEE
Q 038577          518 HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTI-EGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYI  596 (860)
Q Consensus       518 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l  596 (860)
                      ....|.++....-+.+++.+-.||+|.++|..+.+.+... ....+.  .............+....+..++|||++.-+
T Consensus       258 ~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~--~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~  335 (753)
T PF11635_consen  258 LNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPP--NTVTSLFQAGFHFPCIQPPLHVAFSPTMCSL  335 (753)
T ss_pred             cCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCc--cccccccccccccccCCCCceEEECcccceE
Confidence            3456777777777889999999999999999998877666 111110  0000000000011111256679999999999


Q ss_pred             EEecCCCeEE
Q 038577          597 LAGGSSKYIC  606 (860)
Q Consensus       597 ~~~~~dg~v~  606 (860)
                      +.-..+|.+.
T Consensus       336 v~~~~~~~~~  345 (753)
T PF11635_consen  336 VQIDEDGKTK  345 (753)
T ss_pred             EEEecCCCce
Confidence            9999888765

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=91.44  E-value=14  Score=40.09  Aligned_cols=164  Identities=13%  Similarity=0.065  Sum_probs=82.2

Q ss_pred             eEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccC---CCeEEEEEeeCCCEE
Q 038577          458 EIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHT---HDVLTVVYRPDGRQL  534 (860)
Q Consensus       458 ~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l  534 (860)
                      ..+++|.. |..+..+.........+...++|.+++..+  ..++.+|+.. +.........   .--..+..-|+|++|
T Consensus       129 ~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G-~v~~~~~l~~~~~~~HHD~~~l~nGn~L  204 (477)
T PF05935_consen  129 YTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLG-KVIWEYDLPGGYYDFHHDIDELPNGNLL  204 (477)
T ss_dssp             EEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EE
T ss_pred             eEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCC-CEEEeeecCCcccccccccEECCCCCEE
Confidence            66777754 566555543322222266778898887665  6788888753 3233222111   112456677899999


Q ss_pred             EEEeC-------------CCeEEEEeCCCCceeEEEecccccCCCcccc-------ccccccccCCCCcEEEEEEec-CC
Q 038577          535 ACSTL-------------DGQIHFWDPLNGELMYTIEGRRDISGGRLMT-------DRRSAANSSSGKCFTTLCYSA-DG  593 (860)
Q Consensus       535 ~~~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~l~~s~-~g  593 (860)
                      +.+..             .-.|..+| .+|+.+..+....-....+...       ..........=-.++++.+.+ ++
T Consensus       205 ~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd  283 (477)
T PF05935_consen  205 ILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDD  283 (477)
T ss_dssp             EEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTT
T ss_pred             EEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCC
Confidence            88872             22377788 8999998877655432221100       000000111113589999999 55


Q ss_pred             CEEEEecCCCeEEEEECCCceEEEEEeeccccc
Q 038577          594 SYILAGGSSKYICMYDVADQVLLRRFQITHNLS  626 (860)
Q Consensus       594 ~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~  626 (860)
                      .+|+++-....|...|..+++....+..+..+.
T Consensus       284 ~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~  316 (477)
T PF05935_consen  284 SIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWN  316 (477)
T ss_dssp             EEEEEETTT-EEEEEE-TTS-EEEEES-STT--
T ss_pred             eEEEEcCcceEEEEEECCCCcEEEEeCCCCCCC
Confidence            666666666689999999999887776655443

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.37  E-value=7.9  Score=43.13  Aligned_cols=113  Identities=9%  Similarity=0.081  Sum_probs=72.5

Q ss_pred             eEEEEEcC--CCCEEEEEeCCCcEEEEEccC-------C----cc--------eeEEcccCCCeEEEEEe--eCCCEEEE
Q 038577          480 VHGLVFSP--TNATLASSSWDKTVRLWNVFE-------G----KG--------SVESFPHTHDVLTVVYR--PDGRQLAC  536 (860)
Q Consensus       480 v~~l~~s~--~~~~l~s~~~dg~i~iwd~~~-------~----~~--------~~~~~~~~~~v~~~~~s--~~~~~l~~  536 (860)
                      |+.|....  +...|+.|.+||.|.+|.+++       .    ..        ..........+++++++  ...+++|+
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV  182 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV  182 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence            44444433  345788999999999997621       0    00        01112345678999998  88889999


Q ss_pred             EeCCCeEEEEeCCCCc-eeEEEecccccCCCccccccccccccCCCCcEEEEEEecCC---C---EEEEecCCCeEEEEE
Q 038577          537 STLDGQIHFWDPLNGE-LMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADG---S---YILAGGSSKYICMYD  609 (860)
Q Consensus       537 ~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g---~---~l~~~~~dg~v~vwd  609 (860)
                      ++....|.||-..... .....+.+                  .+..-|.+++|-++.   .   +|++++-.|.+.+|+
T Consensus       183 SsNs~~VTVFaf~l~~~r~~~~~s~------------------~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~  244 (717)
T PF08728_consen  183 SSNSQEVTVFAFALVDERFYHVPSH------------------QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK  244 (717)
T ss_pred             ecCCceEEEEEEecccccccccccc------------------ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence            9988888888654321 10000000                  122348888887654   2   788899999999988


Q ss_pred             C
Q 038577          610 V  610 (860)
Q Consensus       610 ~  610 (860)
                      +
T Consensus       245 I  245 (717)
T PF08728_consen  245 I  245 (717)
T ss_pred             E
Confidence            7

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.29  E-value=1.8  Score=40.99  Aligned_cols=84  Identities=15%  Similarity=0.186  Sum_probs=56.0

Q ss_pred             EeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEE
Q 038577          527 YRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYIC  606 (860)
Q Consensus       527 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~  606 (860)
                      +..++++|++.+.+|.+++||+.+++.+..-..-.++...     .. .........|..+.++.+|.-|++-+ +|..+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~-----~~-~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y   90 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNS-----SP-VSDKSSSPNITSCSLTSNGVPIVTLS-NGDSY   90 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcc-----cc-cccCCCCCcEEEEEEcCCCCEEEEEe-CCCEE
Confidence            5568889999999999999999998775543111111000     00 00003345689999999999887765 47789


Q ss_pred             EEECCCceEEE
Q 038577          607 MYDVADQVLLR  617 (860)
Q Consensus       607 vwd~~~~~~~~  617 (860)
                      .|+.+-+.-++
T Consensus        91 ~y~~~L~~W~~  101 (219)
T PF07569_consen   91 SYSPDLGCWIR  101 (219)
T ss_pred             EeccccceeEE
Confidence            99987765543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK13613 lipoprotein LpqB; Provisional

Probab=91.23  E-value=28  Score=38.75  Aligned_cols=179  Identities=18%  Similarity=0.179  Sum_probs=95.9

Q ss_pred             CcEEEe-CCCEEEeeeC--CeEEEEECCCCcE-----EeeccCCccCeeEEEEcCCCCEEEEEcC--CCc--EEEEEccc
Q 038577           16 GNAVLS-QNTKLISPVG--NRVSVTDLIKSKT-----VTLPVESSSNICRIAVSPDGTFLLTVDE--NQR--CHFINLHC   83 (860)
Q Consensus        16 ~~~~~s-dg~~l~~~~~--~~i~v~d~~~~~~-----~~~~~~h~~~v~~va~spdg~~la~~~~--d~~--i~vwd~~~   83 (860)
                      .+++.| |++.+|+..+  ..+++..+..+..     ...+  ....++.-.|.++|. +=+...  ++.  +++..- +
T Consensus       366 ~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~--~~~~Lt~PS~d~~g~-vWtvd~~~~~~~vl~v~~~-~  441 (599)
T PRK13613        366 RRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVT--ADGRLTSPSWDGRGD-LWVVDRDPADPRLLWLLQG-D  441 (599)
T ss_pred             cceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceee--ccCcccCCcCcCCCC-EEEecCCCCCceEEEEEcC-C
Confidence            368889 9988887654  3466665533332     1122  233477778888873 444422  222  445542 4


Q ss_pred             CeEEE--EeecCC-ceeEEEECCCCCEEEEEe----CCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeE
Q 038577           84 HVVLH--RVRFKY-PVNAILFSPNGKYIAVGT----GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYL  156 (860)
Q Consensus        84 ~~~~~--~~~~~~-~v~~~~fspdg~~la~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l  156 (860)
                      |+...  .....+ .|..+..|+||..+|...    .+.|+|=-+...........-...+..-...+..++|..++.++
T Consensus       442 G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~~sL~  521 (599)
T PRK13613        442 GEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGDSQLV  521 (599)
T ss_pred             CcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcCCCEEE
Confidence            44432  112334 899999999999988873    36666554432211111111122222233458999999998877


Q ss_pred             EEee-cCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCC
Q 038577          157 LVGS-KDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKK  202 (860)
Q Consensus       157 ~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~  202 (860)
                      +.+. .++...+|.+.-...    .......+.-..+..++-..+..
T Consensus       522 Vlg~~~~~~~~v~~v~vdG~----~~~~~~~~~v~~~~~ia~~~~~~  564 (599)
T PRK13613        522 VLGREEGGVQQARYVQVDGS----TPPASAPAAVTGVESITASEDER  564 (599)
T ss_pred             EEeccCCCCcceEEEecCCc----CcccccccCCCCeeEEEecCCCC
Confidence            7553 333455555543311    12222233445566666665544

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=91.05  E-value=28  Score=38.39  Aligned_cols=231  Identities=12%  Similarity=0.165  Sum_probs=113.3

Q ss_pred             eCCCEEEEEEccCCcEEEEEccCceE--EEEecCc-ccCeEEEEEcCCC-CEEEEEeCCC--cEEEEECCCCeeEEEeec
Q 038577          316 ELGNWLVFGCAKLGQLLVWEWRSESY--ILKQQGH-YFDVNCLAYSPDS-QLLATGADDN--KVKVWTVSSGFCFVTFTE  389 (860)
Q Consensus       316 ~~~~~l~~~~~~~g~i~v~d~~~~~~--~~~~~~~-~~~v~~~~~s~~~-~~l~~~~~dg--~i~iwd~~~~~~~~~~~~  389 (860)
                      .++..++.+.. +|.+....+.....  ....-+. .....++++..+| .+++.|+.-|  .+..|....-+.+..+. 
T Consensus       220 ~~~~~~lL~~e-~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-  297 (504)
T PF10433_consen  220 KDGDRILLQDE-DGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-  297 (504)
T ss_dssp             TTSSEEEEEET-TSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred             CCCCEEEEEeC-CCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-
Confidence            34555666654 49998887765442  2222222 4455677776665 4677777644  45555533344454553 


Q ss_pred             CCCceEEEEEeeC----CC------EEEEEe---CCCcEEEEEccccceee-----EeeCCCCCcEEEEEECC-CCCEEE
Q 038577          390 HTNAVTALHFMAN----NH------SLLSAS---LDGTVRAWDLFRYRNFR-----TFTTPSSRQFVSLASDQ-SGEVIC  450 (860)
Q Consensus       390 ~~~~v~~i~~~~~----~~------~l~s~~---~dg~i~~wd~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~l~  450 (860)
                      .-++|.++++.+.    ..      .+++++   .+|.+++..  .+-...     ....+....+..+.... +..+++
T Consensus       298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv  375 (504)
T PF10433_consen  298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLV  375 (504)
T ss_dssp             ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEE
T ss_pred             CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCCceEEEEeeecCCCceEEE
Confidence            5678999988532    12      555554   466777764  332222     22222222333333222 256777


Q ss_pred             EEecCCCeEEEEECC---CCceEEEec--C---cccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc-ccCCC
Q 038577          451 AGTLDSFEIFVWSMK---TGRLLDILS--G---HEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF-PHTHD  521 (860)
Q Consensus       451 ~~~~~~~~i~v~d~~---~~~~~~~~~--~---h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~  521 (860)
                      ++..+  .-.++.+.   ..+.+..+.  +   ....+.+-.+.  +..++=.... .|++.+....+...... .....
T Consensus       376 ~S~~~--~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~~  450 (504)
T PF10433_consen  376 LSFPN--ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGSI  450 (504)
T ss_dssp             EEESS--EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESS-EEEEEESSSTSEEEEEE-TTS--
T ss_pred             EEcCC--ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecC-eEEEEECCCCeEEEEEeCCCCCe
Confidence            77665  45555553   333332221  1   11122222222  3444444433 48888877666444433 23444


Q ss_pred             eEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEE
Q 038577          522 VLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTI  557 (860)
Q Consensus       522 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  557 (860)
                      |.+.+.  ++.+++.+..++.+.++.+.........
T Consensus       451 I~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~  484 (504)
T PF10433_consen  451 IVAASI--NDPQVLVALSGGELVYFELDDNKISVSD  484 (504)
T ss_dssp             -SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             EEEEEE--CCCEEEEEEeCCcEEEEEEECCceeeee
Confidence            444444  4467777777899999998877665433

...

>PRK13614 lipoprotein LpqB; Provisional

Probab=91.02  E-value=28  Score=38.35  Aligned_cols=162  Identities=13%  Similarity=0.054  Sum_probs=90.2

Q ss_pred             CeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEeC-C--eEEEEeCCC-CCcccc
Q 038577           54 NICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTG-K--LVQIWRSPG-FKKEVF  129 (860)
Q Consensus        54 ~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~~-~--~i~iwd~~~-~~~~~~  129 (860)
                      .+.+++.|++|..+|....++. .+|-...+......-....++.-.|.++| .+-+..+ .  .|..+...+ ++....
T Consensus       344 ~~~s~avS~~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~g~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~~~~  421 (573)
T PRK13614        344 GPASPAESPVSQTVAFLNGSRT-TLYTVSPGQPARALTSGSTLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEGAQA  421 (573)
T ss_pred             cccceeecCCCceEEEecCCCc-EEEEecCCCcceeeecCCCccCCcccCCC-CEEEeeCCCCceEEEEecCCCcccccc
Confidence            6889999999999998877662 34432323333333335568888999988 5555533 2  444444321 111000


Q ss_pred             eeEEEEEeeccCC-CeEEEEEcCCCCeEEEe-ecCCe--EEEEeecccccCc--ccccceEeecCCCcEEEEEEccCCCC
Q 038577          130 AFELIRTLADCND-KVTALNWSPDSNYLLVG-SKDLA--VRLFYVKEKLKGI--HTNKPFLLLGHRDSVVGCFFSVDKKT  203 (860)
Q Consensus       130 ~~~~~~~~~~h~~-~v~~l~~s~d~~~l~s~-~~dg~--v~vwd~~~~~~~~--~~~~~~~~~~h~~~i~~~~~~~~~~~  203 (860)
                      .. .........+ .|+.+..|+||.+++.. ..+|.  |.|=-+.....+.  .......+ +....+.++.|..++. 
T Consensus       422 ~~-~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~-~~~~~~~sl~W~~~~s-  498 (573)
T PRK13614        422 PT-VTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITL-AADSDADTGAWVGDST-  498 (573)
T ss_pred             cc-eeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceec-ccCCCcceeEEcCCCE-
Confidence            00 0111223334 49999999999777663 34555  7665555432221  11112223 3356889999999886 


Q ss_pred             CccceEEEEcC---CccEEEeeec
Q 038577          204 DKVNRIYTIAR---DCYMFSWGFS  224 (860)
Q Consensus       204 ~~~~~l~s~~~---dg~i~~w~~~  224 (860)
                          .++....   +..+++..+.
T Consensus       499 ----l~V~~~~~~~~~~~~~v~v~  518 (573)
T PRK13614        499 ----VVVTKASATSNVVPELLSVD  518 (573)
T ss_pred             ----EEEEeccCCCcceEEEEEeC
Confidence                5444432   2345555553

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=90.90  E-value=23  Score=37.14  Aligned_cols=267  Identities=11%  Similarity=0.036  Sum_probs=0.0

Q ss_pred             CCEEEEEEcCCeEEEEECCCceeEEEEeecC--ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcc-cCe
Q 038577          276 LDMVVVGFSNGVFGLYQMPDFVCIHLLSISR--EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHY-FDV  352 (860)
Q Consensus       276 ~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~-~~v  352 (860)
                      ...+.++..+|.+.-+|..++..+.......  ..+..-.+..+|+ ++++..+ |.+..+|..+++.+....... ..+
T Consensus        68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~-g~~y~ld~~~G~~~W~~~~~~~~~~  145 (370)
T COG1520          68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWD-GKLYALDASTGTLVWSRNVGGSPYY  145 (370)
T ss_pred             CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEeccc-ceEEEEECCCCcEEEEEecCCCeEE


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCC--CceEEEEEeeCCCEEEEEeC--CCcEEEEEccccceeeE
Q 038577          353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHT--NAVTALHFMANNHSLLSASL--DGTVRAWDLFRYRNFRT  428 (860)
Q Consensus       353 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~i~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~  428 (860)
                      ..-....++..++.. .+|.+...+..++..........  .....-........++.+..  ++.+.-.|..++.....
T Consensus       146 ~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~  224 (370)
T COG1520         146 ASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWS  224 (370)
T ss_pred             ecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeee


Q ss_pred             ----eeCCCC----CcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC----cccCeEEEEEcC-CCCEEEEE
Q 038577          429 ----FTTPSS----RQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG----HEGPVHGLVFSP-TNATLASS  495 (860)
Q Consensus       429 ----~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~----h~~~v~~l~~s~-~~~~l~s~  495 (860)
                          ......    .+......--.+.-++.+..++ .+...|..+++.+..+..    ...++......- +|...+..
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g-~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~~  303 (370)
T COG1520         225 QKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGG-KLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAGADGKVYIGF  303 (370)
T ss_pred             eeeecccCcccccccccccCceEEECCcEEEEecCC-eEEEEEcCCCceEEEEecccEeccCCeeEEeecCCCccEEEEE


Q ss_pred             e-----CCCcEEEEEccCCcce-eEEcccCCCeEEEEEeeCCCEEEEEeCCCe-EEEE
Q 038577          496 S-----WDKTVRLWNVFEGKGS-VESFPHTHDVLTVVYRPDGRQLACSTLDGQ-IHFW  546 (860)
Q Consensus       496 ~-----~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iw  546 (860)
                      .     ..+.+..++...+... .-.....+..........+.++..+..++. ++.+
T Consensus       304 ~~~~~~~~~~~~~~~~~~g~~~~~w~~~~~g~~~~~~~~~~~g~~y~~~~~~~~ly~~  361 (370)
T COG1520         304 TDNDGRGSGSLYALADVPGGTLLKWSYPVGGGYSLSTVAGSDGTLYFGGDDGRGLYAF  361 (370)
T ss_pred             eccccccccceEEEeccCCCeeEEEEEeCCCceecccceeccCeEEecccCCceEEEE

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=90.89  E-value=28  Score=40.37  Aligned_cols=193  Identities=13%  Similarity=0.144  Sum_probs=97.2

Q ss_pred             CEEEEEeCCeEEEEeCCCCCccccee-EEEEEeeccCCCeEEE--EEcCCCCeEEEeecC---CeEEEEeeccccc--C-
Q 038577          106 KYIAVGTGKLVQIWRSPGFKKEVFAF-ELIRTLADCNDKVTAL--NWSPDSNYLLVGSKD---LAVRLFYVKEKLK--G-  176 (860)
Q Consensus       106 ~~la~~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~h~~~v~~l--~~s~d~~~l~s~~~d---g~v~vwd~~~~~~--~-  176 (860)
                      -.|++...|.+.+|-.+...+..... .....+..-...|+..  +++.+|+.++.++.+   +.|++|.+.-.-.  . 
T Consensus        64 A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~  143 (753)
T PF11635_consen   64 ACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQ  143 (753)
T ss_pred             EEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCc
Confidence            45666689999999873322110000 0011122234445554  445667666555544   7788876543210  0 


Q ss_pred             -ccc-ccceEeec----------------------CCCcEEEEEEcc---CCCCCccceEEEEcC----CccEEEeeecC
Q 038577          177 -IHT-NKPFLLLG----------------------HRDSVVGCFFSV---DKKTDKVNRIYTIAR----DCYMFSWGFSG  225 (860)
Q Consensus       177 -~~~-~~~~~~~~----------------------h~~~i~~~~~~~---~~~~~~~~~l~s~~~----dg~i~~w~~~~  225 (860)
                       ... ..+.....                      .-..++.+.|.+   +.. .....+++.+.    ...|.-|.+..
T Consensus       144 ~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~-~~p~Ili~~~~~~~~~SiI~RweL~~  222 (753)
T PF11635_consen  144 QIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKD-SAPEILIVYSSPNTPSSIIERWELRE  222 (753)
T ss_pred             cCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCC-CCCeEEEEEEcCCCCCcEEEEEEEEc
Confidence             000 00100000                      112455666654   211 11113433332    34799999987


Q ss_pred             CCCCCccccCCCCCC-CCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEE
Q 038577          226 NDGKIDETMEDSEPP-SPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLL  302 (860)
Q Consensus       226 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~  302 (860)
                      .........++.... ...........|.......   ..+.|.++....-+..++....||+|.++|..+.+.+...
T Consensus       223 ~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~---~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~  297 (753)
T PF11635_consen  223 EQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDIT---LNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNET  297 (753)
T ss_pred             cCcccchhhhhcCCCCcCCCCCCCceeEEEecccc---cCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhccc
Confidence            654332222221111 1111222233444433332   3356889998888899999999999999998877555433

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PRK13615 lipoprotein LpqB; Provisional

Probab=90.86  E-value=29  Score=38.14  Aligned_cols=151  Identities=14%  Similarity=0.088  Sum_probs=87.6

Q ss_pred             CcEEEe-CCCEEEeeeC-CeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcc-cCeEEEEee-
Q 038577           16 GNAVLS-QNTKLISPVG-NRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLH-CHVVLHRVR-   91 (860)
Q Consensus        16 ~~~~~s-dg~~l~~~~~-~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~-~~~~~~~~~-   91 (860)
                      .+++.| ||+.+|+..+ ..+.++.... ......  ....++.-.|.++| .+=++.......+.... +|... ... 
T Consensus       337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~-~~~~~~--~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~-~v~v  411 (557)
T PRK13615        337 DAATLSADGRQAAVRNASGVWSVGDGDR-DAVLLD--TRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGH-PVAV  411 (557)
T ss_pred             ccceEcCCCceEEEEcCCceEEEecCCC-cceeec--cCCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceE-Eeec
Confidence            356888 9998887653 4577775552 222232  23457788888888 44444333334444433 23332 222 


Q ss_pred             ---cCCceeEEEECCCCCEEEEEe----CCeEEEEeCCCCCcccceeEE---EEEeeccCCCeEEEEEcCCCCeEEEe--
Q 038577           92 ---FKYPVNAILFSPNGKYIAVGT----GKLVQIWRSPGFKKEVFAFEL---IRTLADCNDKVTALNWSPDSNYLLVG--  159 (860)
Q Consensus        92 ---~~~~v~~~~fspdg~~la~~~----~~~i~iwd~~~~~~~~~~~~~---~~~~~~h~~~v~~l~~s~d~~~l~s~--  159 (860)
                         ....|+.+..|+||..+|...    .+.|.|--+.....  .+..+   ...+..-...+.++.|..++...+.+  
T Consensus       412 ~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~--~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~~~  489 (557)
T PRK13615        412 SWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGG--VPTSLTTTPLELLASPGTPLDATWVDELDVATLTLA  489 (557)
T ss_pred             cccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCC--cceEeeeccEEcccCcCcceeeEEcCCCEEEEEecc
Confidence               356899999999999988873    36777644433111  11112   12222223488999999998875655  


Q ss_pred             -ecCCeEEEEeeccc
Q 038577          160 -SKDLAVRLFYVKEK  173 (860)
Q Consensus       160 -~~dg~v~vwd~~~~  173 (860)
                       +.+..+++..+...
T Consensus       490 ~~~~~~v~~v~v~g~  504 (557)
T PRK13615        490 PDGERQVELHQVGGP  504 (557)
T ss_pred             CCCCceEEEEECCCc
Confidence             23345666666543

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=90.82  E-value=7  Score=39.88  Aligned_cols=162  Identities=14%  Similarity=0.096  Sum_probs=94.6

Q ss_pred             EeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEe--cCccc----CeE-EEEEcCCCCEEEEEeCCCcEE
Q 038577          302 LSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ--QGHYF----DVN-CLAYSPDSQLLATGADDNKVK  374 (860)
Q Consensus       302 ~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~--~~~~~----~v~-~~~~s~~~~~l~~~~~dg~i~  374 (860)
                      +......+..+-..|||+++.+-+.  .++.++++.+.....+.  ....+    .|+ .+..-..|..+.+++.||.|.
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~g--~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vs  293 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRTG--SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVS  293 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEecC--CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCcee
Confidence            3444456777888999999988776  67888887765433221  11111    122 122234566788899999998


Q ss_pred             EE-ECCCC-----eeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCE
Q 038577          375 VW-TVSSG-----FCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEV  448 (860)
Q Consensus       375 iw-d~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (860)
                      -| |...+     ..++.++-...++..+.-..+.+-+++-+..|++..+.-...+..-.  .........+++||.+.+
T Consensus       294 QWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~--~~~~~~~~~~~~Sp~~~~  371 (733)
T COG4590         294 QWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF--ERAYQAPQLVAMSPNQAY  371 (733)
T ss_pred             eeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh--hhhhcCcceeeeCcccch
Confidence            87 43322     12222222223444443333445677888888888776543332221  111224567889999999


Q ss_pred             EEEEecCCCeEEEEECCCCce
Q 038577          449 ICAGTLDSFEIFVWSMKTGRL  469 (860)
Q Consensus       449 l~~~~~~~~~i~v~d~~~~~~  469 (860)
                      +++-...  .++++.+++..+
T Consensus       372 Ll~e~~g--ki~~~~l~Nr~P  390 (733)
T COG4590         372 LLSEDQG--KIRLAQLENRNP  390 (733)
T ss_pred             heeecCC--ceEEEEecCCCC
Confidence            8876544  688888776543

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=90.80  E-value=21  Score=36.52  Aligned_cols=157  Identities=18%  Similarity=0.263  Sum_probs=93.1

Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCc------EEEEECCC--C--eeEE-----EeecCCC--------ceEEEEEeeCCCE
Q 038577          349 YFDVNCLAYSPDSQLLATGADDNK------VKVWTVSS--G--FCFV-----TFTEHTN--------AVTALHFMANNHS  405 (860)
Q Consensus       349 ~~~v~~~~~s~~~~~l~~~~~dg~------i~iwd~~~--~--~~~~-----~~~~~~~--------~v~~i~~~~~~~~  405 (860)
                      -+.+..+.+.+++..+++.+.+|.      +..+++..  +  ..+.     .+....+        ..-+|++.+++.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            345778888866666666777777      55555443  1  1111     1111111        3447888778888


Q ss_pred             EEEEeCC------CcEEEEEccccceeeEeeCC--------------CCCcEEEEEECCCCCEEEEEecCC---------
Q 038577          406 LLSASLD------GTVRAWDLFRYRNFRTFTTP--------------SSRQFVSLASDQSGEVICAGTLDS---------  456 (860)
Q Consensus       406 l~s~~~d------g~i~~wd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~~~~~~~---------  456 (860)
                      +++.-.+      ..|..++.. ++....+..+              ....+-+++++|+|+.|+++....         
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            8877777      778888865 5555544322              234578899999999666654322         


Q ss_pred             ------CeEEEEECCC-Cce----EEEecC-----cccCeEEEEEcCCCCEEEEEe-----CCCcEEEEEc
Q 038577          457 ------FEIFVWSMKT-GRL----LDILSG-----HEGPVHGLVFSPTNATLASSS-----WDKTVRLWNV  506 (860)
Q Consensus       457 ------~~i~v~d~~~-~~~----~~~~~~-----h~~~v~~l~~s~~~~~l~s~~-----~dg~i~iwd~  506 (860)
                            ..|..||..+ ++.    ...+..     ....|+.+.+-+++++|+.=-     ....++|+-+
T Consensus       178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v  248 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRV  248 (326)
T ss_pred             cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEE
Confidence                  1355566655 322    222222     356789999999998776422     2344555544

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=90.76  E-value=20  Score=36.17  Aligned_cols=229  Identities=15%  Similarity=0.055  Sum_probs=112.1

Q ss_pred             CEEEEEEcCCeEEEEECCC--ceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceE-------------
Q 038577          277 DMVVVGFSNGVFGLYQMPD--FVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESY-------------  341 (860)
Q Consensus       277 ~~l~~~~~~g~i~~~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~-------------  341 (860)
                      ++++.|+.+|...+. +..  .+..+.  .+...|+.+...+.-+.+++-++....++.+++..-..             
T Consensus        14 ~~lL~GTe~Gly~~~-~~~~~~~~~kl--~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~   90 (302)
T smart00036       14 KWLLVGTEEGLYVLN-ISDQPGTLEKL--IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR   90 (302)
T ss_pred             cEEEEEeCCceEEEE-cccCCCCeEEe--cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence            689999999976655 543  223332  23458999999999999888887666799999843221             


Q ss_pred             --EEEecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCC----eeEEEe---e-cCCCceEEEEEeeC--CCEEEE
Q 038577          342 --ILKQQGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSSG----FCFVTF---T-EHTNAVTALHFMAN--NHSLLS  408 (860)
Q Consensus       342 --~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~----~~~~~~---~-~~~~~v~~i~~~~~--~~~l~s  408 (860)
                        ....-++.......+..... ..++++....+|.++.....    .....+   . .-..++..+..+++  ...+..
T Consensus        91 ~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcv  170 (302)
T smart00036       91 KNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICI  170 (302)
T ss_pred             ccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEE
Confidence              01112333323333333221 23334444567777644322    111110   0 11223333333333  345666


Q ss_pred             EeCCCcEEEEEccc--cceee----EeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceE--EEecCcccCe
Q 038577          409 ASLDGTVRAWDLFR--YRNFR----TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLL--DILSGHEGPV  480 (860)
Q Consensus       409 ~~~dg~i~~wd~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~--~~~~~h~~~v  480 (860)
                      |+..+...++++..  .....    ...........++..-+++.++++-..   .....|....+..  ..+. -....
T Consensus       171 G~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~~~---~~v~Vn~~G~~~~r~~~l~-w~~~p  246 (302)
T smart00036      171 GSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCYDE---FGVFVNLYGKRRSRNPILH-WEFMP  246 (302)
T ss_pred             EEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEECc---EEEEEeCCCCccccceEEE-cCCcc
Confidence            66543344455432  11000    000011102233333344555544332   3445554421211  1122 23445


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEE
Q 038577          481 HGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVES  515 (860)
Q Consensus       481 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  515 (860)
                      .++++.  ..+++.-+ +..|.++++.+++....+
T Consensus       247 ~~~~~~--~pyll~~~-~~~ievr~l~~~~l~q~i  278 (302)
T smart00036      247 ESFAYH--SPYLLAFH-DNGIEIRSIKTGELLQEL  278 (302)
T ss_pred             cEEEEE--CCEEEEEc-CCcEEEEECCCCceEEEE
Confidence            667775  46666665 455999999998744433

Unpublished observations.

>PRK13613 lipoprotein LpqB; Provisional

Probab=90.47  E-value=33  Score=38.23  Aligned_cols=162  Identities=12%  Similarity=0.046  Sum_probs=91.9

Q ss_pred             CCcc-CeeEEEEcCCCCEEEEEcCCC-cEEEEEcccCeE----EEEeecCCceeEEEECCCCCEEEEE-e--CC--eEEE
Q 038577           50 ESSS-NICRIAVSPDGTFLLTVDENQ-RCHFINLHCHVV----LHRVRFKYPVNAILFSPNGKYIAVG-T--GK--LVQI  118 (860)
Q Consensus        50 ~h~~-~v~~va~spdg~~la~~~~d~-~i~vwd~~~~~~----~~~~~~~~~v~~~~fspdg~~la~~-~--~~--~i~i  118 (860)
                      ++.. .+.+++.|+++..+|..+.++ .+.+..+..+..    ....-.....+.-.|.++| .+-+. .  ++  .+++
T Consensus       359 g~~~~~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v  437 (599)
T PRK13613        359 GSGRVPLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVVDRDPADPRLLWL  437 (599)
T ss_pred             CCCCCCccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEecCCCCCceEEEE
Confidence            4434 688999999999999887655 455555433333    1122234557888898888 44444 1  22  3555


Q ss_pred             EeCCCCCcccceeEEEEEeeccCC-CeEEEEEcCCCCeEEEeec---CCeEEEEeecccccCc-ccccceEeecCCCcEE
Q 038577          119 WRSPGFKKEVFAFELIRTLADCND-KVTALNWSPDSNYLLVGSK---DLAVRLFYVKEKLKGI-HTNKPFLLLGHRDSVV  193 (860)
Q Consensus       119 wd~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~d~~~l~s~~~---dg~v~vwd~~~~~~~~-~~~~~~~~~~h~~~i~  193 (860)
                      ..- +++..     .+.. ....+ .|..+..|+||.++|....   .+.|.|=-+.....+. .......+......+.
T Consensus       438 ~~~-~G~~~-----~V~~-~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~  510 (599)
T PRK13613        438 LQG-DGEPV-----EVRT-PELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVT  510 (599)
T ss_pred             EcC-CCcEE-----Eeec-cccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccc
Confidence            553 33321     1111 12233 7999999999988776543   3566665555432221 1122233333344589


Q ss_pred             EEEEccCCCCCccceEEEEc-CCccEEEeeec
Q 038577          194 GCFFSVDKKTDKVNRIYTIA-RDCYMFSWGFS  224 (860)
Q Consensus       194 ~~~~~~~~~~~~~~~l~s~~-~dg~i~~w~~~  224 (860)
                      ++.|..++.     .++.+. .++...+|.+.
T Consensus       511 ~~~W~~~~s-----L~Vlg~~~~~~~~v~~v~  537 (599)
T PRK13613        511 DMSWAGDSQ-----LVVLGREEGGVQQARYVQ  537 (599)
T ss_pred             eeEEcCCCE-----EEEEeccCCCCcceEEEe
Confidence            999999986     555443 33344445443

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=90.30  E-value=42  Score=39.17  Aligned_cols=172  Identities=11%  Similarity=0.056  Sum_probs=96.5

Q ss_pred             ecCCceeEEEEC---C----CCCEEEEEeCCeEEEEeCCCC------Cc--ccceeEEEEEeecc---CCCeEEEEEcCC
Q 038577           91 RFKYPVNAILFS---P----NGKYIAVGTGKLVQIWRSPGF------KK--EVFAFELIRTLADC---NDKVTALNWSPD  152 (860)
Q Consensus        91 ~~~~~v~~~~fs---p----dg~~la~~~~~~i~iwd~~~~------~~--~~~~~~~~~~~~~h---~~~v~~l~~s~d  152 (860)
                      ....+|..|+|+   .    ..++|++-....+.|+...-.      ..  ......++..+..+   ..+...++|+|.
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~  156 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW  156 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence            356778888887   2    336888888888888882211      10  11111233444422   235778999984


Q ss_pred             -CCeEEEeecCCeEEEEeecccccCcccccceEeecCCC----------cEEEEEEccCCCCCccceEEEEcCCccEEEe
Q 038577          153 -SNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRD----------SVVGCFFSVDKKTDKVNRIYTIARDCYMFSW  221 (860)
Q Consensus       153 -~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~----------~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w  221 (860)
                       .+.||+....|...||++... .............+.+          .-..+.|.++..     .|+.++. ..+.++
T Consensus       157 ~~~q~AiVD~~G~Wsvw~i~~~-~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~-----~lLv~~r-~~l~~~  229 (765)
T PF10214_consen  157 DQRQFAIVDEKGNWSVWDIKGR-PKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSN-----RLLVCNR-SKLMLI  229 (765)
T ss_pred             ccceEEEEeccCcEEEEEeccc-cccCCcceeeccCCCccccCCCcccCcceeeEecCCCC-----EEEEEcC-CceEEE
Confidence             468999999999999999322 1110011111112222          233677877766     6776664 466778


Q ss_pred             eecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCC
Q 038577          222 GFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPD  295 (860)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~  295 (860)
                      |+++.....                         . .........|..+.-+|...-.+.-.....|...++..
T Consensus       230 d~~~~~~~~-------------------------~-l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~  277 (765)
T PF10214_consen  230 DFESNWQTE-------------------------Y-LVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS  277 (765)
T ss_pred             ECCCCCccc-------------------------h-hccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence            877643200                         0 11122334677777777633222223446677777654

These proteins are found in fungi.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.14  E-value=1.7  Score=28.01  Aligned_cols=41  Identities=20%  Similarity=0.221  Sum_probs=30.8

Q ss_pred             CCCCEEEEEc-CCCcEEEEEcccCeEEEEeecCCceeEEEEC
Q 038577           62 PDGTFLLTVD-ENQRCHFINLHCHVVLHRVRFKYPVNAILFS  102 (860)
Q Consensus        62 pdg~~la~~~-~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fs  102 (860)
                      |++++|.++. .+++|.++|..+++.+..+.....-..++|+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            6788777654 4789999999999999888855555566553

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=89.74  E-value=27  Score=36.18  Aligned_cols=57  Identities=14%  Similarity=0.121  Sum_probs=28.6

Q ss_pred             EeeCCCEEEEEEccC----------CcEEEEEccCceEEEEecCcccCeEEE-EE-cCCCCEEEEEeCC
Q 038577          314 FNELGNWLVFGCAKL----------GQLLVWEWRSESYILKQQGHYFDVNCL-AY-SPDSQLLATGADD  370 (860)
Q Consensus       314 ~s~~~~~l~~~~~~~----------g~i~v~d~~~~~~~~~~~~~~~~v~~~-~~-s~~~~~l~~~~~d  370 (860)
                      ..-+++..++++...          ..+..||..+.+............... +. .-+++..+.|+.+
T Consensus        60 ~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~  128 (346)
T TIGR03547        60 AAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN  128 (346)
T ss_pred             EEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence            344566666665421          347778887766544321111111111 12 3467777887754

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=89.73  E-value=30  Score=42.28  Aligned_cols=366  Identities=13%  Similarity=0.111  Sum_probs=170.8

Q ss_pred             CccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEe---ecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcc
Q 038577           51 SSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRV---RFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKE  127 (860)
Q Consensus        51 h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~---~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~  127 (860)
                      |-..++.|.-+|+|+.+=.  .++.++.||....  .+..   ....+++.+.-.-||++.| - ++.. +-|+..+...
T Consensus       361 H~A~LTgv~~~~~ge~lRl--Hd~~LY~~d~~~~--~Wk~~~~~~d~~~S~Ls~qgdG~lYA-k-~~~~-l~nLSs~~~~  433 (1774)
T PF11725_consen  361 HIAHLTGVHTDPDGEQLRL--HDDRLYQFDPNTA--RWKPPPDKSDTPFSSLSRQGDGKLYA-K-DDDT-LVNLSSGQMS  433 (1774)
T ss_pred             HHHHhhccccCCCCCeEEe--ecCceeeeccccc--eecCCCCcccchhhhhcccCCCceEe-c-CCCc-eeecCCCCcc
Confidence            5555677777777776543  3567777776654  2221   1234455555555666655 2 2211 3344443310


Q ss_pred             cceeEEEEEeeccCCCeEEEEEcCCCCe-EEEeecCCeEEEEeecccccCccccc--ceEeecCCCcEEEEEEccCCCCC
Q 038577          128 VFAFELIRTLADCNDKVTALNWSPDSNY-LLVGSKDLAVRLFYVKEKLKGIHTNK--PFLLLGHRDSVVGCFFSVDKKTD  204 (860)
Q Consensus       128 ~~~~~~~~~~~~h~~~v~~l~~s~d~~~-l~s~~~dg~v~vwd~~~~~~~~~~~~--~~~~~~h~~~i~~~~~~~~~~~~  204 (860)
                                ...-..+.+...+++|.. +.++.....+.+|++....-......  ...+.+-.....++.++++    
T Consensus       434 ----------~~~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~d----  499 (1774)
T PF11725_consen  434 ----------EAEVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSND----  499 (1774)
T ss_pred             ----------hhhhhhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCchhhhheeecCC----
Confidence                      111234677778899987 45555555679999886621111111  2233333445667777766    


Q ss_pred             ccceEEEEcCCccEEEeeecCCCCCC---ccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEE
Q 038577          205 KVNRIYTIARDCYMFSWGFSGNDGKI---DETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVV  281 (860)
Q Consensus       205 ~~~~l~s~~~dg~i~~w~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  281 (860)
                         +|+++..+|.++.-++......-   ...................     .....+.+..+.+..+.=+..|..-.+
T Consensus       500 ---rLFvADseGkLYsa~l~~~~~~~~~l~~~p~~~~~~~~~~~G~~~-----~VtGF~~gd~G~lhAlikd~~GQ~Hs~  571 (1774)
T PF11725_consen  500 ---RLFVADSEGKLYSADLPAAQDNEPKLKLMPEPAYQLLGSALGGDH-----KVTGFISGDDGQLHALIKDRQGQRHSH  571 (1774)
T ss_pred             ---eEEEEeCCCCEEecccccccCCCcceEeccccccccccccccccc-----eeeccccCCCCeeeEEEeccCCceeec
Confidence               79999999999888776533210   0000000000000000000     001112222223333332222322222


Q ss_pred             EEc-CC-eEE-EEECCCceeEEEEeecCc-----eeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEE---------
Q 038577          282 GFS-NG-VFG-LYQMPDFVCIHLLSISRE-----KITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILK---------  344 (860)
Q Consensus       282 ~~~-~g-~i~-~~~~~~~~~~~~~~~~~~-----~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~---------  344 (860)
                      .-. ++ .+. =|++.+.-.+..-.+-..     .-..+.+...|.   ++-. +|.|..||-.+......         
T Consensus       572 aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~~~~~ldl~r~G~---v~L~-~G~i~~wD~ttq~W~~~~~kd~~~L~  647 (1774)
T PF11725_consen  572 ALDEQGSQLQPGWNLSDALVLDNTRGLPKPPAPAPHEILDLGRAGL---VGLQ-DGKIQYWDSTTQCWKDAGVKDIDQLK  647 (1774)
T ss_pred             cccccCCccCCCCcccceeEeeccCCCCCCCCCChHHhhccccccc---eeec-cceEeeecCcchhhhhccCcCHHHHh
Confidence            111 00 000 133322111111111000     001111112222   2222 39999998655432111         


Q ss_pred             -------ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE----CCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCC
Q 038577          345 -------QQGHYFDVNCLAYSPDSQLLATGADDNKVKVWT----VSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDG  413 (860)
Q Consensus       345 -------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd----~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg  413 (860)
                             +.-..+.|..+.+++....++-+.. ..+.+=-    ++-|..+.-+.  ...|+++++-.+ +.+++....|
T Consensus       648 RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~-~~~a~~~~r~~~e~G~~l~Gl~--~~~i~a~Avv~~-~~fvald~qg  723 (1774)
T PF11725_consen  648 RGLDGNAYVLKDGKVKRLSINQEHPSIAHGDN-NVFALPQRRNKVELGDALEGLE--DRVITAFAVVND-NKFVALDDQG  723 (1774)
T ss_pred             ccccCCceEecCCceeeeecccCCCccccCCC-cccccccccCCCCCCccccCCC--cCcceeEEEEcC-CceEEeccCC
Confidence                   0112345666777766555544332 1111100    01122222222  456788887654 5778888899


Q ss_pred             cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEec
Q 038577          414 TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTL  454 (860)
Q Consensus       414 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  454 (860)
                      .+.... ..+.....-...-...|..++++...++.|....
T Consensus       724 ~lt~h~-k~g~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~  763 (1774)
T PF11725_consen  724 DLTAHQ-KPGRPVPLSRPGLSGEIKDLALDEKQNLYALTST  763 (1774)
T ss_pred             cccccc-CCCCCccCCCCCCCcchhheeeccccceeEecCC
Confidence            999887 5555333333334467888888888776665543

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=89.50  E-value=33  Score=36.72  Aligned_cols=166  Identities=14%  Similarity=0.136  Sum_probs=89.4

Q ss_pred             CcEEEEECCCCeeEEEeec-CCCceEEEEEeeCCCEEEEEeCCCcEEEEEccc-cceeeEeeCCCCCcEEEEEECCCCCE
Q 038577          371 NKVKVWTVSSGFCFVTFTE-HTNAVTALHFMANNHSLLSASLDGTVRAWDLFR-YRNFRTFTTPSSRQFVSLASDQSGEV  448 (860)
Q Consensus       371 g~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (860)
                      |.+.+-+-.+|..+..... -...|+.+++..++ .+..++...-+..|+..+ +.............+..+.-.|+++ 
T Consensus       354 g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g-~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-  431 (671)
T COG3292         354 GELMVANGSTGELVRSVHQLRGMNITTTLEDSRG-RLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-  431 (671)
T ss_pred             ceEEEecCCCCcEEEEeeeccccccchhhhccCC-cEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-
Confidence            3344444455555544322 23456666666644 566666665566666665 3344444455566788888899999 


Q ss_pred             EEEEecCCCeEEEEECCCCceEEEec--C---cccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeE
Q 038577          449 ICAGTLDSFEIFVWSMKTGRLLDILS--G---HEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVL  523 (860)
Q Consensus       449 l~~~~~~~~~i~v~d~~~~~~~~~~~--~---h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  523 (860)
                      +.+|+.++  +.--+.+.++....+.  .   ..+.|..+.+.|+|++-+..+ +| |..|+-+..............-.
T Consensus       432 LWIGTs~G--lvk~~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g-~g-va~~~sq~~~~~~~l~~~~q~qy  507 (671)
T COG3292         432 LWIGTSGG--LVKRDPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLAAG-SG-VAAWESQRRMFVPILDLTGQRQY  507 (671)
T ss_pred             EEEeccCC--eEecCccccchhcccccccCcCCcchhhhhccCCCCceEEEec-ce-eeeeccccceecccccccceeeE
Confidence            77788776  4444555544443332  1   234467788899998644332 34 67777654432222211111112


Q ss_pred             EEEEeeCCCEEEEEeCCCeE
Q 038577          524 TVVYRPDGRQLACSTLDGQI  543 (860)
Q Consensus       524 ~~~~s~~~~~l~~~~~dg~i  543 (860)
                      .. +--.+.++..+...|.+
T Consensus       508 ~f-~~~~~d~vw~~~~Rg~v  526 (671)
T COG3292         508 SF-VPVGGDEVWVHRLRGLV  526 (671)
T ss_pred             EE-EEccCceEeeeeeceee
Confidence            22 22255566666554433

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=89.38  E-value=2.1  Score=27.60  Aligned_cols=41  Identities=15%  Similarity=0.191  Sum_probs=30.0

Q ss_pred             CCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEE
Q 038577          444 QSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVF  485 (860)
Q Consensus       444 ~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~  485 (860)
                      |+++.++++....+.|.++|..+++.+..+... .....++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence            578888888876669999999998888777642 33334444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PLN02193 nitrile-specifier protein

Probab=89.26  E-value=37  Score=36.99  Aligned_cols=197  Identities=9%  Similarity=-0.005  Sum_probs=0.0

Q ss_pred             EEeeCCCEEEEEeCC-------CcEEEEEccccceeeEe---eCCCCCcEEEEEECCCCCEEEEEecCC----CeEEEEE
Q 038577          398 HFMANNHSLLSASLD-------GTVRAWDLFRYRNFRTF---TTPSSRQFVSLASDQSGEVICAGTLDS----FEIFVWS  463 (860)
Q Consensus       398 ~~~~~~~~l~s~~~d-------g~i~~wd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~i~v~d  463 (860)
                      +..-++..++.|+.+       ..+.+||+.+.+=...-   ..+........+..-++.+.+.|+.++    ..++.||
T Consensus       171 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD  250 (470)
T PLN02193        171 IAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFD  250 (470)
T ss_pred             EEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEE


Q ss_pred             CCCCceEEEecC---cccCeEEEEEcCCCCEEEEEeCCCc-----EEEEEccCCcceeEEc---ccCCCeEEEEEeeCCC
Q 038577          464 MKTGRLLDILSG---HEGPVHGLVFSPTNATLASSSWDKT-----VRLWNVFEGKGSVESF---PHTHDVLTVVYRPDGR  532 (860)
Q Consensus       464 ~~~~~~~~~~~~---h~~~v~~l~~s~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~  532 (860)
                      +.+.+....-..   ....-...+..-++++.+.|+.++.     +..||+.+.+-.....   .........+..-+++
T Consensus       251 ~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gk  330 (470)
T PLN02193        251 TTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGK  330 (470)
T ss_pred             CCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCc


Q ss_pred             EEEEEeCC----CeEEEEeCCCCceeEEEec---ccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCC--
Q 038577          533 QLACSTLD----GQIHFWDPLNGELMYTIEG---RRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSK--  603 (860)
Q Consensus       533 ~l~~~~~d----g~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg--  603 (860)
                      +++.++.+    ..+.+||+.+.+-...-..   ...                    .....+..-++++++.|+...  
T Consensus       331 iyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~--------------------R~~~~~~~~~~~iyv~GG~~~~~  390 (470)
T PLN02193        331 VWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSE--------------------RSVFASAAVGKHIVIFGGEIAMD  390 (470)
T ss_pred             EEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCC--------------------cceeEEEEECCEEEEECCccCCc


Q ss_pred             ------------eEEEEECCCce
Q 038577          604 ------------YICMYDVADQV  614 (860)
Q Consensus       604 ------------~v~vwd~~~~~  614 (860)
                                  .+.+||+.+.+
T Consensus       391 ~~~~~~~~~~~ndv~~~D~~t~~  413 (470)
T PLN02193        391 PLAHVGPGQLTDGTFALDTETLQ  413 (470)
T ss_pred             cccccCccceeccEEEEEcCcCE

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=89.16  E-value=32  Score=36.16  Aligned_cols=39  Identities=10%  Similarity=0.011  Sum_probs=19.5

Q ss_pred             eEEEEECCCCceEEEecCcc--cCeEEEEEcCCCCEEEEEeC
Q 038577          458 EIFVWSMKTGRLLDILSGHE--GPVHGLVFSPTNATLASSSW  497 (860)
Q Consensus       458 ~i~v~d~~~~~~~~~~~~h~--~~v~~l~~s~~~~~l~s~~~  497 (860)
                      .+.+||..+.+-...-....  ..-.+++.. ++++.+.|+.
T Consensus       190 ~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~-~~~iYv~GG~  230 (376)
T PRK14131        190 EVLSYDPSTNQWKNAGESPFLGTAGSAVVIK-GNKLWLINGE  230 (376)
T ss_pred             eEEEEECCCCeeeECCcCCCCCCCcceEEEE-CCEEEEEeee
Confidence            68899988765443211111  111223222 5666666664

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=88.95  E-value=34  Score=38.02  Aligned_cols=410  Identities=10%  Similarity=0.004  Sum_probs=0.0

Q ss_pred             EEeeccCCCeEEEEEcCCCCeEEE----eecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEE
Q 038577          135 RTLADCNDKVTALNWSPDSNYLLV----GSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIY  210 (860)
Q Consensus       135 ~~~~~h~~~v~~l~~s~d~~~l~s----~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~  210 (860)
                      .++..-.+.+..++|..-+..+..    ++.|.-|.|...... ...........+...+.+.++.+-.+-.     .++
T Consensus        10 ~~fpt~sg~~~~l~fdsv~D~iyi~c~l~s~d~Giev~~~s~~-~d~s~l~~F~ip~f~dkl~s~~hf~~~~-----~~~   83 (1243)
T COG5290          10 STFPTASGDEDELGFDSVGDWIYITCVLGSTDKGIEVAKESSI-YDESGLKRFEIPFFPDKLLSFKHFHVLT-----FEY   83 (1243)
T ss_pred             ccCCCCCCChHHhcccccCceEEEEeecCCCCCCeeeeeeccc-cchhheeEeccCCcchHhhhhhhhhhhh-----eee


Q ss_pred             EEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEE
Q 038577          211 TIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGL  290 (860)
Q Consensus       211 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~  290 (860)
                      ..-..|.+..--.+.                         ...-........-...|...+|+.|.+.+++...+..|.+
T Consensus        84 f~~~~gDii~~~~dp-------------------------~p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~  138 (1243)
T COG5290          84 FLIDEGDIIHLVNDP-------------------------TPAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILL  138 (1243)
T ss_pred             EEecCCcEEEEEcCC-------------------------CcccchhhhhccccCceEEEeeccCCceEEEEEcCceEEE


Q ss_pred             EECCCceeEEEEeecCcee------EEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEE
Q 038577          291 YQMPDFVCIHLLSISREKI------TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLL  364 (860)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~i------~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  364 (860)
                      ++- ...++..........      ..+.|-.....+---+.. .+++==-+.-.--...+..-...-.-+.|-.|..+.
T Consensus       139 ~~k-~fd~ise~~L~~~dl~ef~khi~VgWgkketqfrgk~~r-aqlrdptmp~~vD~G~l~avd~~k~~i~wrgD~~y~  216 (1243)
T COG5290         139 FDK-YFDPISEYHLKKSDLVEFGKHIRVGWGKKETQFRGKGAR-AQLRDPTMPYMVDYGDLFAVDTNKKIIFWRGDTEYN  216 (1243)
T ss_pred             Eec-cccccchhhcchhHHHHhccceEeeecccchhccccchh-hhccCCCCcccccccceeEeeCCceEEEEccCccee


Q ss_pred             EEEeC----CCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCC-----cEEEEEccccceeeE-eeCCCC
Q 038577          365 ATGAD----DNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDG-----TVRAWDLFRYRNFRT-FTTPSS  434 (860)
Q Consensus       365 ~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg-----~i~~wd~~~~~~~~~-~~~~~~  434 (860)
                      +++..    ...+++|. +.|..-..-....+.-..+.|-|+|..+++-+.||     .|.++.-+..+.-.. +..+..
T Consensus       217 ~v~r~Ee~prra~rvys-reg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~d  295 (1243)
T COG5290         217 LVGRSEERPRRAFRVYS-REGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCD  295 (1243)
T ss_pred             eecchhcccccceeeec-cccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCch


Q ss_pred             CcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeE
Q 038577          435 RQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVE  514 (860)
Q Consensus       435 ~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~  514 (860)
                      ......+|+-....++++..+  .+++|-..+-.......-.-..+.-+.|+|....-+.-+..+.|..-++........
T Consensus       296 Ek~~~~~wn~~s~vlav~~~n--~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~d~~~I~~V~f~~k~~~~~  373 (1243)
T COG5290         296 EKAFLENWNLLSTVLAVAEGN--LLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLLFRDGERILRVFFSEKKTHHG  373 (1243)
T ss_pred             hhhhhhhhhHHHHHHHHhhcc--eEEEEEccceEEEEEEeecCCCcceeeeccccCcEEEEecCCeEEEEEeehhhhcCC


Q ss_pred             EcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCC
Q 038577          515 SFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGS  594 (860)
Q Consensus       515 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~  594 (860)
                      .......-++...  ||+++...-    +.+-++.-.-.-..+.....                     |..+..+...+
T Consensus       374 s~~p~d~g~~~Vi--DGs~~l~Tp----lsl~n~PPPm~~~~~~~d~N---------------------V~dv~~s~~~~  426 (1243)
T COG5290         374 SEYPFDNGTSYVI--DGSYMLYTP----LSLKNLPPPMFSVRVGFDTN---------------------VVDVFPSFAEK  426 (1243)
T ss_pred             cccCccCCceEEE--cCceEEecc----hhhhcCCCCeEEEEecCCCc---------------------eeeeccchhhh


Q ss_pred             EEEEecCCCeEEE
Q 038577          595 YILAGGSSKYICM  607 (860)
Q Consensus       595 ~l~~~~~dg~v~v  607 (860)
                      ..++...|..+..
T Consensus       427 ~~aa~~~drli~f  439 (1243)
T COG5290         427 KGAALLRDRLIMF  439 (1243)
T ss_pred             hHhhhccceeEEE

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.86  E-value=15  Score=37.69  Aligned_cols=147  Identities=10%  Similarity=0.110  Sum_probs=89.8

Q ss_pred             EEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeec
Q 038577          145 TALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFS  224 (860)
Q Consensus       145 ~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~  224 (860)
                      +.+-|. |.+.++.+...|.+.=|.+......   ..+..-....++|.++.|++|.+     .++.--.+++|.+++..
T Consensus        26 ngvFfD-DaNkqlfavrSggatgvvvkgpndD---VpiSfdm~d~G~I~SIkFSlDnk-----ilAVQR~~~~v~f~nf~   96 (657)
T KOG2377|consen   26 NGVFFD-DANKQLFAVRSGGATGVVVKGPNDD---VPISFDMDDKGEIKSIKFSLDNK-----ILAVQRTSKTVDFCNFI   96 (657)
T ss_pred             cceeec-cCcceEEEEecCCeeEEEEeCCCCC---CCceeeecCCCceeEEEeccCcc-----eEEEEecCceEEEEecC
Confidence            344444 4444555555667777877665222   23333345677999999999999     99999999999999885


Q ss_pred             CCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECC-CceeEEEEe
Q 038577          225 GNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMP-DFVCIHLLS  303 (860)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~-~~~~~~~~~  303 (860)
                      ..+....                        ...........|....|+.. .-+|.....| +.+|... ....++..+
T Consensus        97 ~d~~~l~------------------------~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVk  150 (657)
T KOG2377|consen   97 PDNSQLE------------------------YTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVK  150 (657)
T ss_pred             CCchhhH------------------------HHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhh
Confidence            5432110                        11112233445888888776 4455555555 4555543 233444555


Q ss_pred             ecCceeEEEEEeeCCCEEEEEEc
Q 038577          304 ISREKITTAVFNELGNWLVFGCA  326 (860)
Q Consensus       304 ~~~~~i~~~~~s~~~~~l~~~~~  326 (860)
                      .+.-.|.-..|.++.+.++.+++
T Consensus       151 s~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  151 SHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             hcccCccEEEEccccceEeeecc
Confidence            56667777777777776665554

>PRK13615 lipoprotein LpqB; Provisional

Probab=88.65  E-value=42  Score=36.89  Aligned_cols=156  Identities=10%  Similarity=0.022  Sum_probs=90.7

Q ss_pred             eEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEeC-CeEEEEeCCC-CCcccceeEE
Q 038577           56 CRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTG-KLVQIWRSPG-FKKEVFAFEL  133 (860)
Q Consensus        56 ~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~~-~~i~iwd~~~-~~~~~~~~~~  133 (860)
                      .+++.|++|..+|....++.+.++.... .... +.....++.-.|.++| .+-+..+ ....+..... +..    . .
T Consensus       337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~-~~~~-~~~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~----~-~  408 (557)
T PRK13615        337 DAATLSADGRQAAVRNASGVWSVGDGDR-DAVL-LDTRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVG----H-P  408 (557)
T ss_pred             ccceEcCCCceEEEEcCCceEEEecCCC-ccee-eccCCccccCcCcCCC-CEEEEeCCCceEEEEecCCCce----E-E
Confidence            7899999999999988788787776552 2222 2224457888899988 5555533 2344444332 221    0 1


Q ss_pred             EEEeeccCCCeEEEEEcCCCCeEEEeec---CCeEEEEeecccccCc--cc-ccceEeecCCCcEEEEEEccCCCCCccc
Q 038577          134 IRTLADCNDKVTALNWSPDSNYLLVGSK---DLAVRLFYVKEKLKGI--HT-NKPFLLLGHRDSVVGCFFSVDKKTDKVN  207 (860)
Q Consensus       134 ~~~~~~h~~~v~~l~~s~d~~~l~s~~~---dg~v~vwd~~~~~~~~--~~-~~~~~~~~h~~~i~~~~~~~~~~~~~~~  207 (860)
                      +..--.-.+.|..+..|+||.+++....   .++|.|=-+... ...  .. .....+......+.++.|..++.     
T Consensus       409 v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~-~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~-----  482 (557)
T PRK13615        409 VAVSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRD-GGVPTSLTTTPLELLASPGTPLDATWVDELD-----  482 (557)
T ss_pred             eeccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeC-CCcceEeeeccEEcccCcCcceeeEEcCCCE-----
Confidence            1111112357999999999988776532   356766555442 221  11 12233333344889999999886     


Q ss_pred             eEEEEc---CCccEEEeeecC
Q 038577          208 RIYTIA---RDCYMFSWGFSG  225 (860)
Q Consensus       208 ~l~s~~---~dg~i~~w~~~~  225 (860)
                      ..+.+.   .+..+++..+..
T Consensus       483 laVl~~~~~~~~~v~~v~v~g  503 (557)
T PRK13615        483 VATLTLAPDGERQVELHQVGG  503 (557)
T ss_pred             EEEEeccCCCCceEEEEECCC
Confidence            544442   234555555553

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=88.49  E-value=32  Score=35.26  Aligned_cols=106  Identities=11%  Similarity=0.092  Sum_probs=51.3

Q ss_pred             CCCEEEEEEccC----CcEEEEEccCceEE---EEecCcccCe--EEEEEcCCCCEEEEEeC-----CCcEEEEECCCCe
Q 038577          317 LGNWLVFGCAKL----GQLLVWEWRSESYI---LKQQGHYFDV--NCLAYSPDSQLLATGAD-----DNKVKVWTVSSGF  382 (860)
Q Consensus       317 ~~~~l~~~~~~~----g~i~v~d~~~~~~~---~~~~~~~~~v--~~~~~s~~~~~l~~~~~-----dg~i~iwd~~~~~  382 (860)
                      ++..+++++.+.    ..+..+|+.+....   .....-..+.  .+++. -++++.+.|+.     ...+..||+.+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            455555555331    35667777666531   1211111111  12222 25666677764     2357888877653


Q ss_pred             eEE--EeecCCCceEEEEEeeCCCEEEEEeCCCc----EEEEEccccc
Q 038577          383 CFV--TFTEHTNAVTALHFMANNHSLLSASLDGT----VRAWDLFRYR  424 (860)
Q Consensus       383 ~~~--~~~~~~~~v~~i~~~~~~~~l~s~~~dg~----i~~wd~~~~~  424 (860)
                      -..  .+.. .......+...+++..+.||.++.    +.+||+.+.+
T Consensus       151 W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       151 WFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             eeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            222  1211 111222223346677777876643    4578876643

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=87.96  E-value=27  Score=37.45  Aligned_cols=30  Identities=10%  Similarity=0.121  Sum_probs=25.8

Q ss_pred             cEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 038577          583 CFTTLCYSADGSYILAGGSSKYICMYDVAD  612 (860)
Q Consensus       583 ~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~  612 (860)
                      .|.+++..+..+.|++...+|.|.+|++..
T Consensus       191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            499999999999999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	860
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		5e-36
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		4e-26
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		5e-25
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-09
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-20
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-20
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-20
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		4e-20
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		4e-20
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		5e-20
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		5e-20
2h9l_A	329	Wdr5delta23 Length = 329		5e-20
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		5e-20
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		5e-20
2g99_A	308	Structural Basis For The Specific Recognition Of Me		5e-20
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-20
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		5e-20
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		5e-20
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		5e-20
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		5e-20
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-19
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		8e-19
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		9e-05
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		2e-16
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		2e-09
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		2e-16
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		4e-09
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		2e-16
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		2e-09
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-16
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		5e-09
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		3e-16
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		4e-09
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		2e-15
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		3e-15
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		7e-14
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		5e-11
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		7e-15
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		6e-10
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		1e-14
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		3e-10
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-14
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		2e-06
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-14
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-06
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-14
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-06
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-14
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-06
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		3e-14
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		2e-06
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		6e-14
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		6e-14
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-13
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-06
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-13
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		7e-11
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		3e-05
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-13
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-13
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-06
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		2e-13
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		2e-06
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-13
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		3e-13
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		2e-04
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-13
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-04
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		6e-13
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		6e-13
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		4e-04
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		1e-12
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		1e-12
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		3e-12
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		8e-04
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		6e-12
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		6e-12
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		8e-04
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		8e-11
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		5e-10
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		1e-09
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		5e-10
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		3e-09
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		4e-09
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		6e-09
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		1e-08
3ei4_B	436	Structure Of The Hsddb1-Hsddb2 Complex Length = 436		2e-07
4e5z_B	436	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		2e-07
4e54_B	435	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		2e-07
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		3e-07
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		4e-07
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		2e-06
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		1e-05
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		1e-05
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		1e-05
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		1e-05
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		3e-05
4i79_A	399	Crystal Structure Of Human Nup43 Length = 399		3e-05
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		1e-04
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		6e-04
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-04
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		4e-04
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		5e-04
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		6e-04
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		8e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  149 bits (377), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 157/592 (26%), Positives = 266/592 (44%), Gaps = 93/592 (15%)
Query: 52  SSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG 111
           SS++  +A SPDG  + +  +++     N +  ++         V  + FSP+G+ IA  
Sbjct: 16  SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA 75
Query: 112 TG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYV 170
           +  K V++W   G        +L++TL   +  V  + +SPD   +   S D  V+L+  
Sbjct: 76  SDDKTVKLWNRNG--------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 127
Query: 171 KEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKI 230
             +L  + T     L GH  SV G  FS D +T     I + + D  +  W     +G++
Sbjct: 128 NGQL--LQT-----LTGHSSSVWGVAFSPDGQT-----IASASDDKTVKLWN---RNGQL 172
Query: 231 DETMEDSEPPSPGTPERRVKKWGLLRKDD---FSQAPSKVTACDYHRG--LDMVVVGFSN 285
            +T+                 WG+    D    + A    T   ++R   L   + G S+
Sbjct: 173 LQTLTGHSS----------SVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 222
Query: 286 GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ 345
            V G+   PD   I   S S +K T  ++N  G        +L Q L             
Sbjct: 223 SVRGVAFSPDGQTI--ASASDDK-TVKLWNRNG--------QLLQTLT------------ 259
Query: 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHS 405
            GH   VN +A+ PD Q +A+ +DD  VK+W   +G    T T H+++V  + F  +  +
Sbjct: 260 -GHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQT 317
Query: 406 LLSASLDGTVRAWDLFRYRNFRTFTTPSSRQF-VSLASDQSGEVICAGTLDSFEIFVWSM 464
           + SAS D TV+ W+    ++ +T T  SS  + V+ + D  G+ I + + D   + +W+ 
Sbjct: 318 IASASDDKTVKLWNR-NGQHLQTLTGHSSSVWGVAFSPD--GQTIASAS-DDKTVKLWN- 372
Query: 465 KTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLT 524
           + G+LL  L+GH   V G+ FSP   T+AS+S DKTV+LWN   G+       H+  V  
Sbjct: 373 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWG 431
Query: 525 VVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGR-RDISGGRLMTDRRSAANSS---- 579
           V + PD + +A ++ D  +  W+  NG+L+ T+ G    + G     D ++ A++S    
Sbjct: 432 VAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 490
Query: 580 ------SGKCFTTL----------CYSADGSYILAGGSSKYICMYDVADQVL 615
                 +G+   TL           +S DG  I +    K + +++   Q+L
Sbjct: 491 VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL 542

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 111/378 (29%), Positives = 181/378 (47%), Gaps = 62/378 (16%)
Query: 278 MVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR 337
             + G S+ V+G+   PD   I   S S +K T  ++N  G        +L Q L     
Sbjct: 51  QTLTGHSSSVWGVAFSPDGQTI--ASASDDK-TVKLWNRNG--------QLLQTLT---- 95
Query: 338 SESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTAL 397
                    GH   V  +A+SPD Q +A+ +DD  VK+W   +G    T T H+++V  +
Sbjct: 96  ---------GHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGV 145
Query: 398 HFMANNHSLLSASLDGTVRAWDLFRYRN---FRTFTTPSSRQF-VSLASDQSGEVICAGT 453
            F  +  ++ SAS D TV+ W+    RN    +T T  SS  + V+ + D  G+ I + +
Sbjct: 146 AFSPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVWGVAFSPD--GQTIASAS 199
Query: 454 LDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSV 513
            D   + +W+ + G+LL  L+GH   V G+ FSP   T+AS+S DKTV+LWN   G+   
Sbjct: 200 -DDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQ 256
Query: 514 ESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGR-RDISGGRLMTDR 572
               H+  V  V +RPDG+ +A ++ D  +  W+  NG+L+ T+ G    + G     D 
Sbjct: 257 TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDG 315
Query: 573 RSAANSS----------SGKCFTTL----------CYSADGSYILAGGSSKYICMYDVAD 612
           ++ A++S          +G+   TL           +S DG  I +    K + +++   
Sbjct: 316 QTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 375
Query: 613 QVLLRRFQITHNLSLDGV 630
           Q+L  +    H+ S+ GV
Sbjct: 376 QLL--QTLTGHSSSVRGV 391

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  113 bits (282), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 148/289 (51%), Gaps = 37/289 (12%)
Query: 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHS 405
           + H   V  +A+SPD Q +A+ +DD  VK+W   +G    T T H+++V  + F  +  +
Sbjct: 13  EAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQT 71
Query: 406 LLSASLDGTVRAWDLFRYRNFRTFTT----PSSRQFVSLASDQSGEVICAGTLDSFEIFV 461
           + SAS D TV+ W+    RN +   T     SS + V+ + D  G+ I + + D   + +
Sbjct: 72  IASASDDKTVKLWN----RNGQLLQTLTGHSSSVRGVAFSPD--GQTIASAS-DDKTVKL 124
Query: 462 WSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHD 521
           W+ + G+LL  L+GH   V G+ FSP   T+AS+S DKTV+LWN   G+       H+  
Sbjct: 125 WN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSS 182
Query: 522 VLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSG 581
           V  V + PDG+ +A ++ D  +  W+  NG+L+ T+ G                 +SSS 
Sbjct: 183 VWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG-----------------HSSSV 224
Query: 582 KCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGV 630
           +    + +S DG  I +    K + +++   Q+L  +    H+ S++GV
Sbjct: 225 RG---VAFSPDGQTIASASDDKTVKLWNRNGQLL--QTLTGHSSSVNGV 268

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 23/164 (14%)
Query: 473 LSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGR 532
           L  H   V G+ FSP   T+AS+S DKTV+LWN   G+       H+  V  V + PDG+
Sbjct: 12  LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 533 QLACSTLDGQIHFWDPLNGELMYTIEGR-RDISGGRLMTDRRSAANSS----------SG 581
            +A ++ D  +  W+  NG+L+ T+ G    + G     D ++ A++S          +G
Sbjct: 71  TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 129
Query: 582 KCFTTL----------CYSADGSYILAGGSSKYICMYDVADQVL 615
           +   TL           +S DG  I +    K + +++   Q+L
Sbjct: 130 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL 173

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 97.4 bits (241), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 129/276 (46%), Gaps = 11/276 (3%)
Query: 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDV 352
           P++     L+   + +++  F+  G WL    A KL  + +W      +     GH   +
Sbjct: 35  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHKLGI 92
Query: 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412
           + +A+S DS LL + +DD  +K+W VSSG C  T   H+N V   +F   ++ ++S S D
Sbjct: 93  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 152
Query: 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
            +VR WD+   +  +T   P+    VS    ++ G +I + + D     +W   +G+ L 
Sbjct: 153 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLK 209
Query: 472 ILSGHEGPVHGLV-FSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-- 528
            L   + P    V FSP    + +++ D T++LW+  +GK       H ++   +     
Sbjct: 210 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 269
Query: 529 -PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
              G+ +   + D  ++ W+    E++  ++G  D+
Sbjct: 270 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 305

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 129/276 (46%), Gaps = 11/276 (3%)
Query: 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDV 352
           P++     L+   + +++  F+  G WL    A KL  + +W      +     GH   +
Sbjct: 33  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHKLGI 90
Query: 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412
           + +A+S DS LL + +DD  +K+W VSSG C  T   H+N V   +F   ++ ++S S D
Sbjct: 91  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 150
Query: 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
            +VR WD+   +  +T   P+    VS    ++ G +I + + D     +W   +G+ L 
Sbjct: 151 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLK 207
Query: 472 ILSGHEGPVHGLV-FSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-- 528
            L   + P    V FSP    + +++ D T++LW+  +GK       H ++   +     
Sbjct: 208 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 267
Query: 529 -PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
              G+ +   + D  ++ W+    E++  ++G  D+
Sbjct: 268 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 303

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 97.1 bits (240), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 130/276 (47%), Gaps = 11/276 (3%)
Query: 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDV 352
           P++  +  L+   + +++  F+  G WL    A KL  + +W      +     GH   +
Sbjct: 14  PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHKLGI 71
Query: 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412
           + +A+S DS LL + +DD  +K+W VSSG C  T   H+N V   +F   ++ ++S S D
Sbjct: 72  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
            +VR WD+      +T   P+    VS    ++ G +I + + D     +W   +G+ L 
Sbjct: 132 ESVRIWDVKTGMCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLK 188
Query: 472 ILSGHEG-PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-- 528
            L   +  PV  + FSP    + +++ D T++LW+  +GK       H ++   +     
Sbjct: 189 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 248
Query: 529 -PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
              G+ +   + D  ++ W+    E++  ++G  D+
Sbjct: 249 VTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDV 284

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 97.1 bits (240), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 131/279 (46%), Gaps = 11/279 (3%)
Query: 291 YQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHY 349
           +  P++     L+   + +++  F+  G WL    A KL  + +W      +     GH 
Sbjct: 11  FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHK 68
Query: 350 FDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSA 409
             ++ +A+S DS LL + +DD  +K+W VSSG C  T   H+N V   +F   ++ ++S 
Sbjct: 69  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 410 SLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGR 468
           S D +VR WD+   +  +T   P+    VS    ++ G +I + + D     +W   +G+
Sbjct: 129 SFDESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQ 185
Query: 469 LLDILSGHEG-PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVY 527
            L  L   +  PV  + FSP    + +++ D T++LW+  +GK       H ++   +  
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 528 R---PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
                 G+ +   + D  ++ W+    E++  ++G  D+
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 284

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 97.1 bits (240), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 131/279 (46%), Gaps = 11/279 (3%)
Query: 291 YQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHY 349
           +  P++     L+   + +++  F+  G WL    A KL  + +W      +     GH 
Sbjct: 11  FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHK 68
Query: 350 FDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSA 409
             ++ +A+S DS LL + +DD  +K+W VSSG C  T   H+N V   +F   ++ ++S 
Sbjct: 69  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 410 SLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGR 468
           S D +VR WD+   +  +T   P+    VS    ++ G +I + + D     +W   +G+
Sbjct: 129 SFDESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQ 185
Query: 469 LLDILSGHEG-PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVY 527
            L  L   +  PV  + FSP    + +++ D T++LW+  +GK       H ++   +  
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 528 R---PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
                 G+ +   + D  ++ W+    E++  ++G  D+
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 284

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 96.7 bits (239), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 130/276 (47%), Gaps = 11/276 (3%)
Query: 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDV 352
           P++     L+   + +++  F+  G WL    A KL  + +W      +     GH   +
Sbjct: 17  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHKLGI 74
Query: 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412
           + +A+S DS LL + +DD  +K+W VSSG C  T   H+N V   +F   ++ ++S S D
Sbjct: 75  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
            +VR WD+   +  +T   P+    VS    ++ G +I + + D     +W   +G+ L 
Sbjct: 135 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLK 191
Query: 472 ILSGHEG-PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-- 528
            L   +  PV  + FSP    + +++ D T++LW+  +GK       H ++   +     
Sbjct: 192 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 251
Query: 529 -PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
              G+ +   + D  ++ W+    E++  ++G  D+
Sbjct: 252 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 287

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 96.7 bits (239), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 131/279 (46%), Gaps = 11/279 (3%)
Query: 291 YQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHY 349
           +  P++     L+   + +++  F+  G WL    A KL  + +W      +     GH 
Sbjct: 11  FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKL--IKIWGAYDGKFEKTISGHK 68
Query: 350 FDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSA 409
             ++ +A+S DS LL + +DD  +K+W VSSG C  T   H+N V   +F   ++ ++S 
Sbjct: 69  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 410 SLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGR 468
           S D +VR WD+   +  +T   P+    VS    ++ G +I + + D     +W   +G+
Sbjct: 129 SFDESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQ 185
Query: 469 LLDILSGHEG-PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVY 527
            L  L   +  PV  + FSP    + +++ D T++LW+  +GK       H ++   +  
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 528 R---PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
                 G+ +   + D  ++ W+    E++  ++G  D+
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 284

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 96.7 bits (239), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 130/276 (47%), Gaps = 11/276 (3%)
Query: 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDV 352
           P++     L+   + +++  F+  G WL    A KL  + +W      +     GH   +
Sbjct: 28  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHKLGI 85
Query: 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412
           + +A+S DS LL + +DD  +K+W VSSG C  T   H+N V   +F   ++ ++S S D
Sbjct: 86  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 145
Query: 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
            +VR WD+   +  +T   P+    VS    ++ G +I + + D     +W   +G+ L 
Sbjct: 146 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLK 202
Query: 472 ILSGHEG-PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-- 528
            L   +  PV  + FSP    + +++ D T++LW+  +GK       H ++   +     
Sbjct: 203 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 262
Query: 529 -PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
              G+ +   + D  ++ W+    E++  ++G  D+
Sbjct: 263 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 298

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 96.7 bits (239), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 129/276 (46%), Gaps = 11/276 (3%)
Query: 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDV 352
           P++     L+   + +++  F+  G WL    A KL  + +W      +     GH   +
Sbjct: 17  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHKLGI 74
Query: 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412
           + +A+S DS LL + +DD  +K+W VSSG C  T   H+N V   +F   ++ ++S S D
Sbjct: 75  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
            +VR WD+   +  +T   P+    VS    ++ G +I + + D     +W   +G+ L 
Sbjct: 135 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLK 191
Query: 472 ILSGHEGPVHGLV-FSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-- 528
            L   + P    V FSP    + +++ D T++LW+  +GK       H ++   +     
Sbjct: 192 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 251
Query: 529 -PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
              G+ +   + D  ++ W+    E++  ++G  D+
Sbjct: 252 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 287

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 96.7 bits (239), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 130/276 (47%), Gaps = 11/276 (3%)
Query: 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDV 352
           P++     L+   + +++  F+  G WL    A KL  + +W      +     GH   +
Sbjct: 16  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHKLGI 73
Query: 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412
           + +A+S DS LL + +DD  +K+W VSSG C  T   H+N V   +F   ++ ++S S D
Sbjct: 74  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 133
Query: 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
            +VR WD+   +  +T   P+    VS    ++ G +I + + D     +W   +G+ L 
Sbjct: 134 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLK 190
Query: 472 ILSGHEG-PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-- 528
            L   +  PV  + FSP    + +++ D T++LW+  +GK       H ++   +     
Sbjct: 191 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 250
Query: 529 -PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
              G+ +   + D  ++ W+    E++  ++G  D+
Sbjct: 251 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 286

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 96.7 bits (239), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 130/276 (47%), Gaps = 11/276 (3%)
Query: 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDV 352
           P++     L+   + +++  F+  G WL    A KL  + +W      +     GH   +
Sbjct: 7   PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHKLGI 64
Query: 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412
           + +A+S DS LL + +DD  +K+W VSSG C  T   H+N V   +F   ++ ++S S D
Sbjct: 65  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 124
Query: 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
            +VR WD+   +  +T   P+    VS    ++ G +I + + D     +W   +G+ L 
Sbjct: 125 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLK 181
Query: 472 ILSGHEG-PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-- 528
            L   +  PV  + FSP    + +++ D T++LW+  +GK       H ++   +     
Sbjct: 182 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 241
Query: 529 -PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
              G+ +   + D  ++ W+    E++  ++G  D+
Sbjct: 242 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 277

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 96.7 bits (239), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 130/276 (47%), Gaps = 11/276 (3%)
Query: 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDV 352
           P++     L+   + +++  F+  G WL    A KL  + +W      +     GH   +
Sbjct: 10  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHKLGI 67
Query: 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412
           + +A+S DS LL + +DD  +K+W VSSG C  T   H+N V   +F   ++ ++S S D
Sbjct: 68  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 127
Query: 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
            +VR WD+   +  +T   P+    VS    ++ G +I + + D     +W   +G+ L 
Sbjct: 128 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLK 184
Query: 472 ILSGHEG-PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-- 528
            L   +  PV  + FSP    + +++ D T++LW+  +GK       H ++   +     
Sbjct: 185 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 244
Query: 529 -PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
              G+ +   + D  ++ W+    E++  ++G  D+
Sbjct: 245 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 280

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 96.7 bits (239), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 130/276 (47%), Gaps = 11/276 (3%)
Query: 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDV 352
           P++     L+   + +++  F+  G WL    A KL  + +W      +     GH   +
Sbjct: 11  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHKLGI 68
Query: 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412
           + +A+S DS LL + +DD  +K+W VSSG C  T   H+N V   +F   ++ ++S S D
Sbjct: 69  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 128
Query: 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
            +VR WD+   +  +T   P+    VS    ++ G +I + + D     +W   +G+ L 
Sbjct: 129 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLK 185
Query: 472 ILSGHEG-PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-- 528
            L   +  PV  + FSP    + +++ D T++LW+  +GK       H ++   +     
Sbjct: 186 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 245
Query: 529 -PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
              G+ +   + D  ++ W+    E++  ++G  D+
Sbjct: 246 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 281

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 96.7 bits (239), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 130/276 (47%), Gaps = 11/276 (3%)
Query: 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDV 352
           P++     L+   + +++  F+  G WL    A KL  + +W      +     GH   +
Sbjct: 17  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHKLGI 74
Query: 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412
           + +A+S DS LL + +DD  +K+W VSSG C  T   H+N V   +F   ++ ++S S D
Sbjct: 75  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
            +VR WD+   +  +T   P+    VS    ++ G +I + + D     +W   +G+ L 
Sbjct: 135 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLK 191
Query: 472 ILSGHEG-PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-- 528
            L   +  PV  + FSP    + +++ D T++LW+  +GK       H ++   +     
Sbjct: 192 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 251
Query: 529 -PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
              G+ +   + D  ++ W+    E++  ++G  D+
Sbjct: 252 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 287

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 96.7 bits (239), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 130/276 (47%), Gaps = 11/276 (3%)
Query: 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDV 352
           P++     L+   + +++  F+  G WL    A KL  + +W      +     GH   +
Sbjct: 12  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHKLGI 69
Query: 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412
           + +A+S DS LL + +DD  +K+W VSSG C  T   H+N V   +F   ++ ++S S D
Sbjct: 70  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 129
Query: 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
            +VR WD+   +  +T   P+    VS    ++ G +I + + D     +W   +G+ L 
Sbjct: 130 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLK 186
Query: 472 ILSGHEG-PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-- 528
            L   +  PV  + FSP    + +++ D T++LW+  +GK       H ++   +     
Sbjct: 187 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 246
Query: 529 -PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
              G+ +   + D  ++ W+    E++  ++G  D+
Sbjct: 247 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 282

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 96.7 bits (239), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 130/276 (47%), Gaps = 11/276 (3%)
Query: 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDV 352
           P++     L+   + +++  F+  G WL    A KL  + +W      +     GH   +
Sbjct: 11  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHKLGI 68
Query: 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412
           + +A+S DS LL + +DD  +K+W VSSG C  T   H+N V   +F   ++ ++S S D
Sbjct: 69  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 128
Query: 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
            +VR WD+   +  +T   P+    VS    ++ G +I + + D     +W   +G+ L 
Sbjct: 129 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLK 185
Query: 472 ILSGHEG-PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-- 528
            L   +  PV  + FSP    + +++ D T++LW+  +GK       H ++   +     
Sbjct: 186 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 245
Query: 529 -PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
              G+ +   + D  ++ W+    E++  ++G  D+
Sbjct: 246 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 281

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 129/276 (46%), Gaps = 11/276 (3%)
Query: 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDV 352
           P++  +  L+   + +++  F+  G WL    A KL  + +W      +     GH   +
Sbjct: 14  PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHKLGI 71
Query: 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412
           + +A+S DS LL + +DD  +K+W VSSG C  T   H+N V   +F   ++ ++S S D
Sbjct: 72  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
            +VR WD+      +T   P+    VS    ++ G +I + + D     +W   +G+ L 
Sbjct: 132 ESVRIWDVKTGMCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLK 188
Query: 472 ILSGHEG-PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-- 528
            L   +  PV  + FSP    + +++ D  ++LW+  +GK       H ++   +     
Sbjct: 189 TLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 248
Query: 529 -PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
              G+ +   + D  ++ W+    E++  ++G  D+
Sbjct: 249 VTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDV 284

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 92.8 bits (229), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 118/257 (45%), Gaps = 27/257 (10%)
Query: 352 VNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASL 411
           +  + +SPD + LATGA+D  +++W + +    +    H   + +L +  +   L+S S 
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 412 DGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
           D TVR WDL   +   T +       V++ S   G+ I AG+LD   + VW  +TG L++
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIEDGVTTVAV-SPGDGKYIAAGSLDR-AVRVWDSETGFLVE 243
Query: 472 IL-------SGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVES--------- 515
            L       +GH+  V+ +VF+    ++ S S D++V+LWN+       +S         
Sbjct: 244 RLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE 303
Query: 516 ---FPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRD------ISGG 566
                H   VL+V    +   +   + D  + FWD  +G  +  ++G R+      ++ G
Sbjct: 304 VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG 363
Query: 567 RLMTDRRSAANSSSGKC 583
             +    +   + SG C
Sbjct: 364 SSLGPEYNVFATGSGDC 380

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 67/165 (40%), Gaps = 23/165 (13%)
Query: 480 VHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTL 539
           +  + FSP    LA+ + D+ +R+W++   K  +    H  D+ ++ Y P G +L   + 
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 540 DGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYS-ADGSYILA 598
           D  +  WD   G+   T+     I  G                  TT+  S  DG YI A
Sbjct: 186 DRTVRIWDLRTGQCSLTLS----IEDG-----------------VTTVAVSPGDGKYIAA 224
Query: 599 GGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAG 643
           G   + + ++D     L+ R   + N S  G  D + S   T  G
Sbjct: 225 GSLDRAVRVWDSETGFLVERLD-SENESGTGHKDSVYSVVFTRDG 268

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 2/174 (1%)
Query: 333 VWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTN 392
           +W+  +        GH  DV  L+ +PD++L  +GA D   K+W V  G C  TFT H +
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 393 AVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSR-QFVSLASDQSGEVICA 451
            + A+ F  N ++  + S D T R +DL   +   T++  +      S++  +SG ++ A
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 452 GTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN 505
           G  D F   VW         +L+GH+  V  L  +     +A+ SWD  +++WN
Sbjct: 288 G-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 118/290 (40%), Gaps = 39/290 (13%)
Query: 386 TFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQS 445
           T   H   + A+H+  ++  LLSAS DG +  WD +           SS   ++ A   S
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSS-WVMTCAYAPS 108
Query: 446 GEVICAGTLDSFEIFVWSMKTG----RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTV 501
           G  +  G LD+    ++++KT     R+   L+GH G +    F   N  + +SS D T 
Sbjct: 109 GNYVACGGLDNI-CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTC 166
Query: 502 RLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRR 561
            LW++  G+ +     HT DV+++   PD R       D     WD   G    T  G  
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 562 -DISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV-ADQVLLRRF 619
            DI+                      +C+  +G+    G       ++D+ ADQ L+   
Sbjct: 227 SDINA---------------------ICFFPNGNAFATGSDDATCRLFDLRADQELM--- 262
Query: 620 QITHNLSLDGVIDFLNSKNMTEAGPMDLI--DDDNSDTEEGVEKQTRGKL 667
                 S D +I  + S + +++G + L   DD N +  + ++    G L
Sbjct: 263 ----TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 2/174 (1%)
Query: 333 VWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTN 392
           +W+  +        GH  DV  L+ +PD++L  +GA D   K+W V  G C  TFT H +
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 393 AVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSR-QFVSLASDQSGEVICA 451
            + A+ F  N ++  + S D T R +DL   +   T++  +      S++  +SG ++ A
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 452 GTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN 505
           G  D F   VW         +L+GH+  V  L  +     +A+ SWD  +++WN
Sbjct: 288 G-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 115/289 (39%), Gaps = 37/289 (12%)
Query: 386 TFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQS 445
           T   H   + A+H+  ++  L+SAS DG +  WD +           SS   ++ A   S
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSS-WVMTCAYAPS 108
Query: 446 GEVICAGTLDSF-EIFVWSMKTG--RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVR 502
           G  +  G LD+   I+    + G  R+   L+GH G +    F   N  + SS  D T  
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCA 167
Query: 503 LWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRR- 561
           LW++  G+ +     HT DV+++   PD R       D     WD   G    T  G   
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 562 DISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV-ADQVLLRRFQ 620
           DI+                      +C+  +G+    G       ++D+ ADQ L+    
Sbjct: 228 DINA---------------------ICFFPNGNAFATGSDDATCRLFDLRADQELM---- 262
Query: 621 ITHNLSLDGVIDFLNSKNMTEAGPMDLI--DDDNSDTEEGVEKQTRGKL 667
                S D +I  + S + +++G + L   DD N +  + ++    G L
Sbjct: 263 ---TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 2/174 (1%)
Query: 333 VWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTN 392
           +W+  +        GH  DV  L+ +PD++L  +GA D   K+W V  G C  TFT H +
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 393 AVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSR-QFVSLASDQSGEVICA 451
            + A+ F  N ++  + S D T R +DL   +   T++  +      S++  +SG ++ A
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 452 GTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN 505
           G  D F   VW         +L+GH+  V  L  +     +A+ SWD  +++WN
Sbjct: 288 G-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 118/290 (40%), Gaps = 39/290 (13%)
Query: 386 TFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQS 445
           T   H   + A+H+  ++  LLSAS DG +  WD +           SS   ++ A   S
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSS-WVMTCAYAPS 108
Query: 446 GEVICAGTLDSFEIFVWSMKTG----RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTV 501
           G  +  G LD+    ++++KT     R+   L+GH G +    F   N  + +SS D T 
Sbjct: 109 GNYVACGGLDNI-CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTC 166
Query: 502 RLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRR 561
            LW++  G+ +     HT DV+++   PD R       D     WD   G    T  G  
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 562 -DISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV-ADQVLLRRF 619
            DI+                      +C+  +G+    G       ++D+ ADQ L+   
Sbjct: 227 SDINA---------------------ICFFPNGNAFATGSDDATCRLFDLRADQELM--- 262
Query: 620 QITHNLSLDGVIDFLNSKNMTEAGPMDLI--DDDNSDTEEGVEKQTRGKL 667
                 S D +I  + S + +++G + L   DD N +  + ++    G L
Sbjct: 263 ----TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 2/174 (1%)
Query: 333 VWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTN 392
           +W+  +        GH  DV  L+ +PD++L  +GA D   K+W V  G C  TFT H +
Sbjct: 179 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 238
Query: 393 AVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSR-QFVSLASDQSGEVICA 451
            + A+ F  N ++  + S D T R +DL   +   T++  +      S++  +SG ++ A
Sbjct: 239 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 298
Query: 452 GTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN 505
           G  D F   VW         +L+GH+  V  L  +     +A+ SWD  +++WN
Sbjct: 299 G-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 118/290 (40%), Gaps = 39/290 (13%)
Query: 386 TFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQS 445
           T   H   + A+H+  ++  L+SAS DG +  WD +           SS   ++ A   S
Sbjct: 61  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSS-WVMTCAYAPS 119
Query: 446 GEVICAGTLDSFEIFVWSMKTG----RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTV 501
           G  +  G LD+    ++++KT     R+   L+GH G +    F   N  + +SS D T 
Sbjct: 120 GNYVACGGLDNI-CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTC 177
Query: 502 RLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRR 561
            LW++  G+ +     HT DV+++   PD R       D     WD   G    T  G  
Sbjct: 178 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 237
Query: 562 -DISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV-ADQVLLRRF 619
            DI+                      +C+  +G+    G       ++D+ ADQ L+   
Sbjct: 238 SDINA---------------------ICFFPNGNAFATGSDDATCRLFDLRADQELM--- 273
Query: 620 QITHNLSLDGVIDFLNSKNMTEAGPMDLI--DDDNSDTEEGVEKQTRGKL 667
                 S D +I  + S + +++G + L   DD N +  + ++    G L
Sbjct: 274 ----TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 319

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 2/174 (1%)
Query: 333 VWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTN 392
           +W+  +        GH  DV  L+ +PD++L  +GA D   K+W V  G C  TFT H +
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 393 AVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSR-QFVSLASDQSGEVICA 451
            + A+ F  N ++  + S D T R +DL   +   T++  +      S++  +SG ++ A
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 452 GTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN 505
           G  D F   VW         +L+GH+  V  L  +     +A+ SWD  +++WN
Sbjct: 288 G-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 117/290 (40%), Gaps = 39/290 (13%)
Query: 386 TFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQS 445
           T   H   + A+H+  ++  L+SAS DG +  WD +           SS   ++ A   S
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSS-WVMTCAYAPS 108
Query: 446 GEVICAGTLDSFEIFVWSMKTG----RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTV 501
           G  +  G LD+    ++++KT     R+   L+GH G +    F   N  + SS  D T 
Sbjct: 109 GNYVACGGLDNI-CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTC 166
Query: 502 RLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRR 561
            LW++  G+ +     HT DV+++   PD R       D     WD   G    T  G  
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 562 -DISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV-ADQVLLRRF 619
            DI+                      +C+  +G+    G       ++D+ ADQ L+   
Sbjct: 227 SDINA---------------------ICFFPNGNAFATGSDDATCRLFDLRADQELM--- 262
Query: 620 QITHNLSLDGVIDFLNSKNMTEAGPMDLI--DDDNSDTEEGVEKQTRGKL 667
                 S D +I  + S + +++G + L   DD N +  + ++    G L
Sbjct: 263 ----TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 79/182 (43%), Gaps = 10/182 (5%)
Query: 329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDS--QLLATGADDNKVKVWTVSSGFCFVT 386
           G   +W+  S   +    GH  DV CL  +P        +G  D K  VW + SG C   
Sbjct: 176 GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA 235
Query: 387 FTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQ-- 444
           F  H + V ++ +  +  +  S S D T R +DL   R  R     S    +  AS    
Sbjct: 236 FETHESDVNSVRYYPSGDAFASGSDDATCRLYDL---RADREVAIYSKESIIFGASSVDF 292
Query: 445 --SGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVR 502
             SG ++ AG  D + I VW +  G  + IL GHE  V  L  SP      S SWD T+R
Sbjct: 293 SLSGRLLFAGYND-YTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLR 351
Query: 503 LW 504
           +W
Sbjct: 352 VW 353

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 149/345 (43%), Gaps = 29/345 (8%)
Query: 227 DGKIDETMEDSEPPSPGTPERRVKKW--GLLRKDDFSQAPSKVTACDYHRGLDMVVVGFS 284
           + K++E  E+     P   +R  K+W      K   S   S VT   +H    ++V    
Sbjct: 69  ESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASE 128
Query: 285 NGVFGL--YQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYI 342
           +    +  Y+  DF     L    + +    F+  G  L+  C+    + +W+++    I
Sbjct: 129 DATIKVWDYETGDFE--RTLKGHTDSVQDISFDHSGK-LLASCSADMTIKLWDFQGFECI 185
Query: 343 LKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMAN 402
               GH  +V+ ++  P+   + + + D  +K+W V +G+C  TFT H   V  +    +
Sbjct: 186 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 245
Query: 403 NHSLLSASLDGTVRAW---------DLFRYRNFR---TFTTPSSRQFVSLA-------SD 443
              + S S D TVR W         +L  +R+     ++   SS   +S A       S 
Sbjct: 246 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 305
Query: 444 QSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRL 503
           + G  + +G+ D   I +W + TG  L  L GH+  V G++F      + S + DKT+R+
Sbjct: 306 KPGPFLLSGSRDK-TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRV 364
Query: 504 WNVFEGKGSVESF-PHTHDVLTVVYRPDGRQLACSTLDGQIHFWD 547
           W+ ++ K  +++   H H V ++ +      +   ++D  +  W+
Sbjct: 365 WD-YKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 76.3 bits (186), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 125/279 (44%), Gaps = 25/279 (8%)
Query: 300 HLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSP 359
           + LS  R  +T  +F+ + + +V   ++   + VW++ +  +    +GH   V  +++  
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMV-SASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 160
Query: 360 DSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWD 419
             +LLA+ + D  +K+W      C  T   H + V+++  M N   ++SAS D T++ W+
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 420 LFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEG 478
           +      +TFT    R++V +   +Q G +I + + D   + VW + T      L  H  
Sbjct: 221 VQTGYCVKTFT--GHREWVRMVRPNQDGTLIASCSNDQ-TVRVWVVATKECKAELREHRH 277
Query: 479 PVHGLVFSP-------TNAT-------------LASSSWDKTVRLWNVFEGKGSVESFPH 518
            V  + ++P       + AT             L S S DKT+++W+V  G   +    H
Sbjct: 278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 337
Query: 519 THDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTI 557
            + V  V++   G+ +     D  +  WD  N   M T+
Sbjct: 338 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 376

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 116/293 (39%), Gaps = 47/293 (16%)
Query: 339 ESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALH 398
           E Y L   GH   V  + + P   ++ + ++D  +KVW   +G    T   HT++V  + 
Sbjct: 100 EKYAL--SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDIS 157
Query: 399 FMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFE 458
           F  +   L S S D T++ WD   +   RT          S++   +G+ I + + D   
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHG-HDHNVSSVSIMPNGDHIVSASRDK-T 215
Query: 459 IFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPH 518
           I +W ++TG  +   +GH   V  +  +     +AS S D+TVR+W V   +   E   H
Sbjct: 216 IKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH 275
Query: 519 THDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANS 578
            H V  + + P+    + S   G                                 +   
Sbjct: 276 RHVVECISWAPESSYSSISEATG---------------------------------SETK 302
Query: 579 SSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVI 631
            SGK          G ++L+G   K I M+DV+  + L    + H+  + GV+
Sbjct: 303 KSGK---------PGPFLLSGSRDKTIKMWDVSTGMCLMTL-VGHDNWVRGVL 345

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 79.7 bits (195), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 123/270 (45%), Gaps = 10/270 (3%)
Query: 347 GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSL 406
           GH   V  +  S D Q   +G+ D ++++W +++G     F  HT  V ++ F  +N  +
Sbjct: 428 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQI 487
Query: 407 LSASLDGTVRAWD-LFRYRNFRTFTTPSSRQFVS---LASDQSGEVICAGTLDSFEIFVW 462
           +SAS D T++ W+ L   +   +      R +VS    + +     I + + D   + VW
Sbjct: 488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDK-TVKVW 546
Query: 463 SMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDV 522
           ++   +L   L+GH G V  +  SP  +  AS   D  V LW++ EGK  + S      +
Sbjct: 547 NLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK-KLYSLEANSVI 605
Query: 523 LTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGK 582
             + + P+ R   C+  +  I  WD  +  ++  +  + D+       D    A +    
Sbjct: 606 HALCFSPN-RYWLCAATEHGIKIWDLESKSIVEDL--KVDLKAEAEKADNSGPAATKRKV 662
Query: 583 CF-TTLCYSADGSYILAGGSSKYICMYDVA 611
            + T+L +SADGS + +G +   I ++ + 
Sbjct: 663 IYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 73/168 (43%), Gaps = 29/168 (17%)
Query: 473 LSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGR 532
           L+GH   V  +V S       S SWD  +RLW++  G  +     HT DVL+V +  D R
Sbjct: 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR 485
Query: 533 QLACSTLDGQIHFWDPLNGELMYTI----EGRRD------ISGGRLMTDRRSAANSSSGK 582
           Q+  ++ D  I  W+ L GE  YTI    EG RD       S   L     SA+   + K
Sbjct: 486 QIVSASRDRTIKLWNTL-GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVK 544
Query: 583 CF------------------TTLCYSADGSYILAGGSSKYICMYDVAD 612
            +                  +T+  S DGS   +GG    + ++D+A+
Sbjct: 545 VWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE 592

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 127/274 (46%), Gaps = 20/274 (7%)
Query: 344 KQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANN 403
           + +GH   V+ +A S +     + + D+ +++W + +G C   F  HT  V ++ F  +N
Sbjct: 62  RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 404 HSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVS---LASDQSGEVICAGTLDSFEIF 460
             ++S   D  +R W++ +     T +  +   +VS    +      VI +G  D+  + 
Sbjct: 122 RQIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNL-VK 179
Query: 461 VWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTH 520
           VW + TGRL+  L GH   V  +  SP  +  ASS  D   RLW++ +G+ ++       
Sbjct: 180 VWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGE-ALSEMAAGA 238
Query: 521 DVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSS 580
            +  + + P+ R   C+  +  I  +D  N +++  +E   +  G + +           
Sbjct: 239 PINQICFSPN-RYWMCAATEKGIRIFDLENKDII--VELAPEHQGSKKIVP--------- 286
Query: 581 GKCFTTLCYSADGSYILAGGSSKYICMYDVADQV 614
            +C  ++ +SADGS + +G +   I ++ V++  
Sbjct: 287 -ECV-SIAWSADGSTLYSGYTDNVIRVWGVSENA 318

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 108/259 (41%), Gaps = 47/259 (18%)
Query: 473 LSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGR 532
           L GH   V  +  S       S+SWD ++RLWN+  G+   +   HT DVL+V + PD R
Sbjct: 63  LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 533 QLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSAD 592
           Q+     D  +  W+ + GE M+T+                  A++    C      S D
Sbjct: 123 QIVSGGRDNALRVWN-VKGECMHTLS---------------RGAHTDWVSCV-RFSPSLD 165
Query: 593 GSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDN 652
              I++GG    + ++D+A   L+          L G  +++ S  ++  G +    D  
Sbjct: 166 APVIVSGGWDNLVKVWDLATGRLV--------TDLKGHTNYVTSVTVSPDGSLCASSD-- 215
Query: 653 SDTEEGVEK---QTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYS 709
              ++GV +    T+G+   ++    P      I   C   +P      AAT +G+ ++ 
Sbjct: 216 ---KDGVARLWDLTKGEALSEMAAGAP------INQICF--SPNRYWMCAATEKGIRIFD 264
Query: 710 IDESFIFDPTDLDIDVTPE 728
           ++        D+ +++ PE
Sbjct: 265 LENK------DIIVELAPE 277

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 131/305 (42%), Gaps = 43/305 (14%)
Query: 346 QGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSS-----GFCFVTFTEHTNAVTALHF 399
           +GH   V  LA S     LL + + D  +  W ++      G    +F  H++ V     
Sbjct: 14  EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 73
Query: 400 MANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEI 459
            A+    LSAS D T+R WD+     ++ F    S   +S+  D+   +I +G+ D   I
Sbjct: 74  TADGAYALSASWDKTLRLWDVATGETYQRFVGHKS-DVMSVDIDKKASMIISGSRDK-TI 131
Query: 460 FVWSMKTGRLLDILSGHEGPVHGLVFSPT------NATLASSSWDKTVRLWNVFEGKGSV 513
            VW++K G+ L  L GH   V  +   P       + T+ S+  DK V+ WN+ + +   
Sbjct: 132 KVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 514 ESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRR 573
           +   H  ++ T+   PDG  +A +  DG+I  W+    + MYT+  + ++       +R 
Sbjct: 191 DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRY 250
Query: 574 --SAANSSSGKCFT--------------------------TLCYSADGSYILAGGSSKYI 605
             +AA ++  K F+                          +L +SADG  + AG +   I
Sbjct: 251 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 606 CMYDV 610
            ++ V
Sbjct: 311 RVWQV 315

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 100/259 (38%), Gaps = 49/259 (18%)
Query: 475 GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQL 534
           GH   V     +   A   S+SWDKT+RLW+V  G+       H  DV++V        +
Sbjct: 63  GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 535 ACSTLDGQIHFWDPLNGELMYTIEGRRD-ISGGRLMTDRRSAANSSSGKCFTTLCYSADG 593
              + D  I  W  + G+ + T+ G  D +S  R++ + ++  +S +             
Sbjct: 123 ISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT------------- 168
Query: 594 SYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFL----NSKNMTEAGPMDLID 649
             I++ G+ K +  ++      L +FQI          DF+    N   +T +    LI 
Sbjct: 169 --IISAGNDKMVKAWN------LNQFQIE--------ADFIGHNSNINTLTASPDGTLIA 212
Query: 650 DDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYS 709
               D E  +      K  Y L            +   L  +P      AAT  G+ V+S
Sbjct: 213 SAGKDGEIMLWNLAAKKAMYTLSA--------QDEVFSLAFSPNRYWLAAATATGIKVFS 264
Query: 710 IDESFIFDPTDLDIDVTPE 728
           +D  ++ D      D+ PE
Sbjct: 265 LDPQYLVD------DLRPE 277

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 131/305 (42%), Gaps = 43/305 (14%)
Query: 346 QGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSS-----GFCFVTFTEHTNAVTALHF 399
           +GH   V  LA S     LL + + D  +  W ++      G    +F  H++ V     
Sbjct: 8   EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 67
Query: 400 MANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEI 459
            A+    LSAS D T+R WD+     ++ F    S   +S+  D+   +I +G+ D   I
Sbjct: 68  TADGAYALSASWDKTLRLWDVATGETYQRFVGHKS-DVMSVDIDKKASMIISGSRDK-TI 125
Query: 460 FVWSMKTGRLLDILSGHEGPVHGLVFSPT------NATLASSSWDKTVRLWNVFEGKGSV 513
            VW++K G+ L  L GH   V  +   P       + T+ S+  DK V+ WN+ + +   
Sbjct: 126 KVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 184
Query: 514 ESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRR 573
           +   H  ++ T+   PDG  +A +  DG+I  W+    + MYT+  + ++       +R 
Sbjct: 185 DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRY 244
Query: 574 --SAANSSSGKCFT--------------------------TLCYSADGSYILAGGSSKYI 605
             +AA ++  K F+                          +L +SADG  + AG +   I
Sbjct: 245 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 304
Query: 606 CMYDV 610
            ++ V
Sbjct: 305 RVWQV 309

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 100/259 (38%), Gaps = 49/259 (18%)
Query: 475 GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQL 534
           GH   V     +   A   S+SWDKT+RLW+V  G+       H  DV++V        +
Sbjct: 57  GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 116
Query: 535 ACSTLDGQIHFWDPLNGELMYTIEGRRD-ISGGRLMTDRRSAANSSSGKCFTTLCYSADG 593
              + D  I  W  + G+ + T+ G  D +S  R++ + ++  +S +             
Sbjct: 117 ISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT------------- 162
Query: 594 SYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFL----NSKNMTEAGPMDLID 649
             I++ G+ K +  ++      L +FQI          DF+    N   +T +    LI 
Sbjct: 163 --IISAGNDKMVKAWN------LNQFQIE--------ADFIGHNSNINTLTASPDGTLIA 206
Query: 650 DDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYS 709
               D E  +      K  Y L            +   L  +P      AAT  G+ V+S
Sbjct: 207 SAGKDGEIMLWNLAAKKAMYTLSA--------QDEVFSLAFSPNRYWLAAATATGIKVFS 258
Query: 710 IDESFIFDPTDLDIDVTPE 728
           +D  ++ D      D+ PE
Sbjct: 259 LDPQYLVD------DLRPE 271

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 131/305 (42%), Gaps = 43/305 (14%)
Query: 346 QGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSS-----GFCFVTFTEHTNAVTALHF 399
           +GH   V  LA S     LL + + D  +  W ++      G    +F  H++ V     
Sbjct: 14  EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 73
Query: 400 MANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEI 459
            A+    LSAS D T+R WD+     ++ F    S   +S+  D+   +I +G+ D   I
Sbjct: 74  TADGAYALSASWDKTLRLWDVATGETYQRFVGHKS-DVMSVDIDKKASMIISGSRDK-TI 131
Query: 460 FVWSMKTGRLLDILSGHEGPVHGLVFSPT------NATLASSSWDKTVRLWNVFEGKGSV 513
            VW++K G+ L  L GH   V  +   P       + T+ S+  DK V+ WN+ + +   
Sbjct: 132 KVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 514 ESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRR 573
           +   H  ++ T+   PDG  +A +  DG+I  W+    + MYT+  + ++       +R 
Sbjct: 191 DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRY 250
Query: 574 --SAANSSSGKCFT--------------------------TLCYSADGSYILAGGSSKYI 605
             +AA ++  K F+                          +L +SADG  + AG +   I
Sbjct: 251 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 606 CMYDV 610
            ++ V
Sbjct: 311 RVWQV 315

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 100/259 (38%), Gaps = 49/259 (18%)
Query: 475 GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQL 534
           GH   V     +   A   S+SWDKT+RLW+V  G+       H  DV++V        +
Sbjct: 63  GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 535 ACSTLDGQIHFWDPLNGELMYTIEGRRD-ISGGRLMTDRRSAANSSSGKCFTTLCYSADG 593
              + D  I  W  + G+ + T+ G  D +S  R++ + ++  +S +             
Sbjct: 123 ISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT------------- 168
Query: 594 SYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFL----NSKNMTEAGPMDLID 649
             I++ G+ K +  ++      L +FQI          DF+    N   +T +    LI 
Sbjct: 169 --IISAGNDKMVKAWN------LNQFQIE--------ADFIGHNSNINTLTASPDGTLIA 212
Query: 650 DDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYS 709
               D E  +      K  Y L            +   L  +P      AAT  G+ V+S
Sbjct: 213 SAGKDGEIMLWNLAAKKAMYTLSA--------QDEVFSLAFSPNRYWLAAATATGIKVFS 264
Query: 710 IDESFIFDPTDLDIDVTPE 728
           +D  ++ D      D+ PE
Sbjct: 265 LDPQYLVD------DLRPE 277

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 131/305 (42%), Gaps = 43/305 (14%)
Query: 346 QGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSS-----GFCFVTFTEHTNAVTALHF 399
           +GH   V  LA S     LL + + D  +  W ++      G    +F  H++ V     
Sbjct: 14  EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 73
Query: 400 MANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEI 459
            A+    LSAS D T+R WD+     ++ F    S   +S+  D+   +I +G+ D   I
Sbjct: 74  TADGAYALSASWDKTLRLWDVATGETYQRFVGHKS-DVMSVDIDKKASMIISGSRDK-TI 131
Query: 460 FVWSMKTGRLLDILSGHEGPVHGLVFSPT------NATLASSSWDKTVRLWNVFEGKGSV 513
            VW++K G+ L  L GH   V  +   P       + T+ S+  DK V+ WN+ + +   
Sbjct: 132 KVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 514 ESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRR 573
           +   H  ++ T+   PDG  +A +  DG+I  W+    + MYT+  + ++       +R 
Sbjct: 191 DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRY 250
Query: 574 --SAANSSSGKCFT--------------------------TLCYSADGSYILAGGSSKYI 605
             +AA ++  K F+                          +L +SADG  + AG +   I
Sbjct: 251 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 606 CMYDV 610
            ++ V
Sbjct: 311 RVWQV 315

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 100/259 (38%), Gaps = 49/259 (18%)
Query: 475 GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQL 534
           GH   V     +   A   S+SWDKT+RLW+V  G+       H  DV++V        +
Sbjct: 63  GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 535 ACSTLDGQIHFWDPLNGELMYTIEGRRD-ISGGRLMTDRRSAANSSSGKCFTTLCYSADG 593
              + D  I  W  + G+ + T+ G  D +S  R++ + ++  +S +             
Sbjct: 123 ISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT------------- 168
Query: 594 SYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFL----NSKNMTEAGPMDLID 649
             I++ G+ K +  ++      L +FQI          DF+    N   +T +    LI 
Sbjct: 169 --IISAGNDKMVKAWN------LNQFQIE--------ADFIGHNSNINTLTASPDGTLIA 212
Query: 650 DDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYS 709
               D E  +      K  Y L            +   L  +P      AAT  G+ V+S
Sbjct: 213 SAGKDGEIMLWNLAAKKAMYTLSA--------QDEVFSLAFSPNRYWLAAATATGIKVFS 264
Query: 710 IDESFIFDPTDLDIDVTPE 728
           +D  ++ D      D+ PE
Sbjct: 265 LDPQYLVD------DLRPE 277

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 130/303 (42%), Gaps = 43/303 (14%)
Query: 346 QGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSS-----GFCFVTFTEHTNAVTALHF 399
           +GH   V  LA S     LL + + D  +  W ++      G    +F  H++ V     
Sbjct: 14  EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 73
Query: 400 MANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEI 459
            A+    LSAS D T+R WD+     ++ F    S   +S+  D+   +I +G+ D   I
Sbjct: 74  TADGAYALSASWDKTLRLWDVATGETYQRFVGHKS-DVMSVDIDKKASMIISGSRDK-TI 131
Query: 460 FVWSMKTGRLLDILSGHEGPVHGLVFSPT------NATLASSSWDKTVRLWNVFEGKGSV 513
            VW++K G+ L  L GH   V  +   P       + T+ S+  DK V+ WN+ + +   
Sbjct: 132 KVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 514 ESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRR 573
           +   H  ++ T+   PDG  +A +  DG+I  W+    + MYT+  + ++       +R 
Sbjct: 191 DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRY 250
Query: 574 --SAANSSSGKCFT--------------------------TLCYSADGSYILAGGSSKYI 605
             +AA ++  K F+                          +L +SADG  + AG +   I
Sbjct: 251 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 606 CMY 608
            ++
Sbjct: 311 RVW 313

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 100/259 (38%), Gaps = 49/259 (18%)
Query: 475 GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQL 534
           GH   V     +   A   S+SWDKT+RLW+V  G+       H  DV++V        +
Sbjct: 63  GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 535 ACSTLDGQIHFWDPLNGELMYTIEGRRD-ISGGRLMTDRRSAANSSSGKCFTTLCYSADG 593
              + D  I  W  + G+ + T+ G  D +S  R++ + ++  +S +             
Sbjct: 123 ISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT------------- 168
Query: 594 SYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFL----NSKNMTEAGPMDLID 649
             I++ G+ K +  ++      L +FQI          DF+    N   +T +    LI 
Sbjct: 169 --IISAGNDKMVKAWN------LNQFQIE--------ADFIGHNSNINTLTASPDGTLIA 212
Query: 650 DDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYS 709
               D E  +      K  Y L            +   L  +P      AAT  G+ V+S
Sbjct: 213 SAGKDGEIMLWNLAAKKAMYTLSA--------QDEVFSLAFSPNRYWLAAATATGIKVFS 264
Query: 710 IDESFIFDPTDLDIDVTPE 728
           +D  ++ D      D+ PE
Sbjct: 265 LDPQYLVD------DLRPE 277

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 76.6 bits (187), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 114/296 (38%), Gaps = 74/296 (25%)
Query: 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHS 405
           +GH   V+ +  S D Q   +G+ D  +++W +++G     F  HT  V ++ F ++N  
Sbjct: 60  RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ 119
Query: 406 LLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK 465
           ++S S D T++ W+                             +C  T+           
Sbjct: 120 IVSGSRDKTIKLWNTLG--------------------------VCKYTVQD--------- 144
Query: 466 TGRLLDILSGHEGPVHGLVFSP--TNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVL 523
                     H   V  + FSP  +N  + S  WDK V++WN+   K       HT  + 
Sbjct: 145 --------ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLN 196
Query: 524 TVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRR---------------------- 561
           TV   PDG   A    DGQ   WD   G+ +YT++G                        
Sbjct: 197 TVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSI 256
Query: 562 ---DISGGRLMTDRRSAANSSSGKC----FTTLCYSADGSYILAGGSSKYICMYDV 610
              D+ G  ++ + +    S+S K      T+L +SADG  + AG +   + ++ V
Sbjct: 257 KIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 312

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 76.6 bits (187), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 114/296 (38%), Gaps = 74/296 (25%)
Query: 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHS 405
           +GH   V+ +  S D Q   +G+ D  +++W +++G     F  HT  V ++ F ++N  
Sbjct: 83  RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ 142
Query: 406 LLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK 465
           ++S S D T++ W+                             +C  T+           
Sbjct: 143 IVSGSRDKTIKLWNTLG--------------------------VCKYTVQD--------- 167
Query: 466 TGRLLDILSGHEGPVHGLVFSP--TNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVL 523
                     H   V  + FSP  +N  + S  WDK V++WN+   K       HT  + 
Sbjct: 168 --------ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLN 219
Query: 524 TVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRR---------------------- 561
           TV   PDG   A    DGQ   WD   G+ +YT++G                        
Sbjct: 220 TVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSI 279
Query: 562 ---DISGGRLMTDRRSAANSSSGKC----FTTLCYSADGSYILAGGSSKYICMYDV 610
              D+ G  ++ + +    S+S K      T+L +SADG  + AG +   + ++ V
Sbjct: 280 KIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 121/560 (21%), Positives = 211/560 (37%), Gaps = 104/560 (18%)
Query: 101  FSPNGKYIAVGTG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLV- 158
            FS +  YIA  +  K V+IW S   K       L+ T  + +++V   +++  SN+LL+ 
Sbjct: 672  FSSDDSYIATCSADKKVKIWDSATGK-------LVHTYDEHSEQVNCCHFTNKSNHLLLA 724
Query: 159  -GSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCY 217
             GS D  ++L+ + +K           + GH +SV  C FS D +      + + + D  
Sbjct: 725  TGSNDFFLKLWDLNQK------ECRNTMFGHTNSVNHCRFSPDDEL-----LASCSADGT 773
Query: 218  MFSWGF-SGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGL 276
            +  W   S N+ K                   VK++ L  +D        V  C +    
Sbjct: 774  LRLWDVRSANERK----------------SINVKRFFLSSEDPPEDVEVIVKCCSWSADG 817
Query: 277  DMVVVGFSNGVFGLYQMPDFVCIHLLS-ISREKITTAVFNELGNWLVFGCAKLGQLLVWE 335
            D ++V   N V     + D     LL+ I     +T  + +   +       L Q  V  
Sbjct: 818  DKIIVAAKNKVL----LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL 873
Query: 336  WRSESY--ILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTV-----SSGFCF---- 384
            W  +S   +   +GH   V+ + +SPD     T +DD  ++VW       +S        
Sbjct: 874  WNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEI 933
Query: 385  -VTFTEHTNAVTA------LHFMANNHSLLSASLDGTVRAWDLFRYRNFRTF-------- 429
             V F E+   V A      L  +A     +    +  V    L  +  +  F        
Sbjct: 934  DVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIK 993
Query: 430  --TTPSSRQFVSLASDQS----------GEVICAGTLDSFEIFVWSMKTGRLLDILSGHE 477
                P++R F S    +           G+ + + + DS  I VW+ +TG  +  L  H+
Sbjct: 994  IIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSV-IQVWNWQTGDYV-FLQAHQ 1051
Query: 478  GPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACS 537
              V        ++ L S S+D TV++WNV  G+   +   H   VL+     D  + + +
Sbjct: 1052 ETVKDFRL-LQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSST 1110
Query: 538  TLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYIL 597
            + D     W   + +L+  +   +  +G                 C     +S DG  + 
Sbjct: 1111 SADKTAKIW---SFDLLSPLHELKGHNG-----------------CVRCSAFSLDGILLA 1150
Query: 598  AGGSSKYICMYDVADQVLLR 617
             G  +  I +++V+D  LL 
Sbjct: 1151 TGDDNGEIRIWNVSDGQLLH 1170

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 101/251 (40%), Gaps = 34/251 (13%)
Query: 390 HTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVI 449
           HT+AV    F  +   + S   D T++            F   +  + + + + +   + 
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQ-----------VFKAETGEKLLDIKAHEDEVLC 669
Query: 450 CA-GTLDSF--------EIFVWSMKTGRLLDILSGHEGPVHGLVFS--PTNATLASSSWD 498
           CA  + DS+        ++ +W   TG+L+     H   V+   F+    +  LA+ S D
Sbjct: 670 CAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSND 729
Query: 499 KTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIE 558
             ++LW++ + +     F HT+ V    + PD   LA  + DG +  WD      + +  
Sbjct: 730 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD------VRSAN 783
Query: 559 GRRDISGGRLMTDRRSAANSSS--GKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLL 616
            R+ I+  R                KC +   +SADG  I+    +K + ++D+    LL
Sbjct: 784 ERKSINVKRFFLSSEDPPEDVEVIVKCCS---WSADGDKIIVAAKNK-VLLFDIHTSGLL 839
Query: 617 RRFQITHNLSL 627
                 H+ ++
Sbjct: 840 AEIHTGHHSTI 850

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 91/201 (45%), Gaps = 9/201 (4%)
Query: 347 GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSL 406
           GH   V CL Y  D +++ TG+ D+ V+VW V++G    T   H  AV  LH   NN  +
Sbjct: 171 GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMM 226
Query: 407 LSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT 466
           ++ S D ++  WD+    +          +      D   + I + + D   I VW+  T
Sbjct: 227 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDR-TIKVWNTST 285
Query: 467 GRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVV 526
              +  L+GH+  +  L +   +  + S S D T+RLW++    G+       H+ L   
Sbjct: 286 CEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDI--ECGACLRVLEGHEELVRC 341
Query: 527 YRPDGRQLACSTLDGQIHFWD 547
            R D +++     DG+I  WD
Sbjct: 342 IRFDNKRIVSGAYDGKIKVWD 362

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 121/560 (21%), Positives = 211/560 (37%), Gaps = 104/560 (18%)
Query: 101  FSPNGKYIAVGTG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLV- 158
            FS +  YIA  +  K V+IW S   K       L+ T  + +++V   +++  SN+LL+ 
Sbjct: 665  FSSDDSYIATCSADKKVKIWDSATGK-------LVHTYDEHSEQVNCCHFTNKSNHLLLA 717
Query: 159  -GSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCY 217
             GS D  ++L+ + +K           + GH +SV  C FS D +      + + + D  
Sbjct: 718  TGSNDFFLKLWDLNQK------ECRNTMFGHTNSVNHCRFSPDDEL-----LASCSADGT 766
Query: 218  MFSWGF-SGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGL 276
            +  W   S N+ K                   VK++ L  +D        V  C +    
Sbjct: 767  LRLWDVRSANERK----------------SINVKRFFLSSEDPPEDVEVIVKCCSWSADG 810
Query: 277  DMVVVGFSNGVFGLYQMPDFVCIHLLS-ISREKITTAVFNELGNWLVFGCAKLGQLLVWE 335
            D ++V   N V     + D     LL+ I     +T  + +   +       L Q  V  
Sbjct: 811  DKIIVAAKNKVL----LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL 866
Query: 336  WRSESY--ILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTV-----SSGFCF---- 384
            W  +S   +   +GH   V+ + +SPD     T +DD  ++VW       +S        
Sbjct: 867  WNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEI 926
Query: 385  -VTFTEHTNAVTA------LHFMANNHSLLSASLDGTVRAWDLFRYRNFRTF-------- 429
             V F E+   V A      L  +A     +    +  V    L  +  +  F        
Sbjct: 927  DVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIK 986
Query: 430  --TTPSSRQFVSLASDQS----------GEVICAGTLDSFEIFVWSMKTGRLLDILSGHE 477
                P++R F S    +           G+ + + + DS  I VW+ +TG  +  L  H+
Sbjct: 987  IIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSV-IQVWNWQTGDYV-FLQAHQ 1044
Query: 478  GPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACS 537
              V        ++ L S S+D TV++WNV  G+   +   H   VL+     D  + + +
Sbjct: 1045 ETVKDFRL-LQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSST 1103
Query: 538  TLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYIL 597
            + D     W   + +L+  +   +  +G                 C     +S DG  + 
Sbjct: 1104 SADKTAKIW---SFDLLSPLHELKGHNG-----------------CVRCSAFSLDGILLA 1143
Query: 598  AGGSSKYICMYDVADQVLLR 617
             G  +  I +++V+D  LL 
Sbjct: 1144 TGDDNGEIRIWNVSDGQLLH 1163

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 101/251 (40%), Gaps = 34/251 (13%)
Query: 390 HTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVI 449
           HT+AV    F  +   + S   D T++            F   +  + + + + +   + 
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQ-----------VFKAETGEKLLDIKAHEDEVLC 662
Query: 450 CA-GTLDSF--------EIFVWSMKTGRLLDILSGHEGPVHGLVFS--PTNATLASSSWD 498
           CA  + DS+        ++ +W   TG+L+     H   V+   F+    +  LA+ S D
Sbjct: 663 CAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSND 722
Query: 499 KTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIE 558
             ++LW++ + +     F HT+ V    + PD   LA  + DG +  WD      + +  
Sbjct: 723 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD------VRSAN 776
Query: 559 GRRDISGGRLMTDRRSAANSSS--GKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLL 616
            R+ I+  R                KC +   +SADG  I+    +K + ++D+    LL
Sbjct: 777 ERKSINVKRFFLSSEDPPEDVEVIVKCCS---WSADGDKIIVAAKNK-VLLFDIHTSGLL 832
Query: 617 RRFQITHNLSL 627
                 H+ ++
Sbjct: 833 AEIHTGHHSTI 843

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 128/305 (41%), Gaps = 43/305 (14%)
Query: 346 QGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSS-----GFCFVTFTEHTNAVTALHF 399
           +GH   V  LA S     LL + + D  +  W ++      G    +F  H++ V     
Sbjct: 14  EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 73
Query: 400 MANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEI 459
            A+    LSAS D T+R WD+     ++ F    S    S+  D+    I +G+ D   I
Sbjct: 74  TADGAYALSASWDKTLRLWDVATGETYQRFVGHKS-DVXSVDIDKKASXIISGSRDK-TI 131
Query: 460 FVWSMKTGRLLDILSGHEGPVHGLVFSPT------NATLASSSWDKTVRLWNVFEGKGSV 513
            VW++K G+ L  L GH   V  +   P       + T+ S+  DK V+ WN+ + +   
Sbjct: 132 KVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEA 190
Query: 514 ESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRR 573
           +   H  ++ T+   PDG  +A +  DG+I  W+    +  YT+  + ++       +R 
Sbjct: 191 DFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRY 250
Query: 574 --SAANSSSGKCFT--------------------------TLCYSADGSYILAGGSSKYI 605
             +AA ++  K F+                          +L +SADG  + AG +   I
Sbjct: 251 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 606 CMYDV 610
            ++ V
Sbjct: 311 RVWQV 315

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 108/281 (38%), Gaps = 49/281 (17%)
Query: 453 TLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGS 512
           TL S+++     K G  +    GH   V     +   A   S+SWDKT+RLW+V  G+  
Sbjct: 41  TLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY 100
Query: 513 VESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRD-ISGGRLMTD 571
                H  DV +V        +   + D  I  W  + G+ + T+ G  D +S  R++ +
Sbjct: 101 QRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPN 159
Query: 572 RRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVI 631
            ++  +S +               I++ G+ K +  ++      L +FQI          
Sbjct: 160 EKADDDSVT---------------IISAGNDKXVKAWN------LNQFQIE--------A 190
Query: 632 DFL----NSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKC 687
           DF+    N   +T +    LI     D E  +      K  Y L            +   
Sbjct: 191 DFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSA--------QDEVFS 242
Query: 688 LKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPE 728
           L  +P      AAT  G+ V+S+D  ++ D      D+ PE
Sbjct: 243 LAFSPNRYWLAAATATGIKVFSLDPQYLVD------DLRPE 277

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 137/310 (44%), Gaps = 37/310 (11%)
Query: 352 VNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASL 411
           + CL +  +   + +G+DDN +KVW+  +G C  T   HT  V +     N   ++S S 
Sbjct: 122 ITCLQFCGNR--IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGST 177
Query: 412 DGTVRAWDLFRYRNFRT-FTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLL 470
           D T++ W+        T +   S+ + + L   +    + +G+ D+  + VW ++TG+ L
Sbjct: 178 DRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR----VVSGSRDA-TLRVWDIETGQCL 232
Query: 471 DILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFP-HTHDVLTVVYRP 529
            +L GH   V  + +      + S ++D  V++W+  E +  + +   HT+ V ++ +  
Sbjct: 233 HVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDP-ETETCLHTLQGHTNRVYSLQF-- 287
Query: 530 DGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSS---------- 579
           DG  +   +LD  I  WD   G  ++T+ G + ++ G  + D    + ++          
Sbjct: 288 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIK 347
Query: 580 SGKCFTTL-----------CYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLD 628
           +G+C  TL           C   + ++++       + ++D+     +R      +    
Sbjct: 348 TGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSG 407
Query: 629 GVIDFLNSKN 638
           GV+  + + N
Sbjct: 408 GVVWRIRASN 417

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 116/286 (40%), Gaps = 16/286 (5%)
Query: 271 DYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISR--EKITTAVFNELGNWLVFGCAKL 328
           D+  G +++ V   N V+ L+       + LL + +  E I++  + + GN+L  G +  
Sbjct: 123 DWSSG-NVLAVALDNSVY-LWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS- 179
Query: 329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFV-TF 387
            ++ +W+ + +  +     H   V  L++  +S +L++G+    +    V      V T 
Sbjct: 180 AEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATL 237
Query: 388 TEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFR----YRNFRTFTT-PSSRQFVSLAS 442
           + H+  V  L +  +   L S   D  V  W        +   +TFT    + + V+   
Sbjct: 238 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 297
Query: 443 DQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSW--DKT 500
            QS  +   G      I +W++ +G  L  +  H   V  +++SP    L S        
Sbjct: 298 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKELISGHGFAQNQ 356
Query: 501 VRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFW 546
           + +W         E   HT  VL++   PDG  +A +  D  +  W
Sbjct: 357 LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 85/206 (41%), Gaps = 14/206 (6%)
Query: 368 ADDNKVKVWTVSSG--FCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRN 425
           A DN V +W+ SSG     +   +    ++++ ++   + L   +    V+ WD+ + + 
Sbjct: 133 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 192
Query: 426 FRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRL-LDILSGHEGPVHGLV 484
            R  T+ S+R    + S      I +    S  I    ++     +  LSGH   V GL 
Sbjct: 193 LRNMTSHSAR----VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR 248
Query: 485 FSPTNATLASSSWDKTVRLWNVFEGKGS---VESF-PHTHDVLTVVYRPDGRQLACS--- 537
           ++P    LAS   D  V +W    G+G    +++F  H   V  V + P    +  +   
Sbjct: 249 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 308
Query: 538 TLDGQIHFWDPLNGELMYTIEGRRDI 563
           T D  I  W+  +G  +  ++    +
Sbjct: 309 TSDRHIRIWNVCSGACLSAVDAHSQV 334

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 84/179 (46%), Gaps = 10/179 (5%)
Query: 338 SESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSG----FCFVTFTEHTNA 393
           +E ++    GH  +V  L ++PD + LA+G +DN V VW  + G        TFT+H  A
Sbjct: 219 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGA 278
Query: 394 VTALHFMANNHSLLS---ASLDGTVRAWDLFRYRNFRTFTTPSSRQFVS-LASDQSGEVI 449
           V A+ +     ++L+    + D  +R W++            S  Q  S L S    E+I
Sbjct: 279 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS--QVCSILWSPHYKELI 336
Query: 450 CAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFE 508
                   ++ +W   T   +  L GH   V  L  SP  AT+AS++ D+T+RLW  FE
Sbjct: 337 SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 85/206 (41%), Gaps = 14/206 (6%)
Query: 368 ADDNKVKVWTVSSG--FCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRN 425
           A DN V +W+ SSG     +   +    ++++ ++   + L   +    V+ WD+ + + 
Sbjct: 122 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 181
Query: 426 FRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRL-LDILSGHEGPVHGLV 484
            R  T+ S+R    + S      I +    S  I    ++     +  LSGH   V GL 
Sbjct: 182 LRNMTSHSAR----VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR 237
Query: 485 FSPTNATLASSSWDKTVRLWNVFEGKGS---VESF-PHTHDVLTVVYRPDGRQLACS--- 537
           ++P    LAS   D  V +W    G+G    +++F  H   V  V + P    +  +   
Sbjct: 238 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 297
Query: 538 TLDGQIHFWDPLNGELMYTIEGRRDI 563
           T D  I  W+  +G  +  ++    +
Sbjct: 298 TSDRHIRIWNVCSGACLSAVDAHSQV 323

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 132/302 (43%), Gaps = 31/302 (10%)
Query: 319 NWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTV 378
           N+++ G A    + V++  ++ ++L+  GH   V  L Y+    +L +G+ D  V+VW +
Sbjct: 133 NYVITG-ADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDI 190
Query: 379 SSGFCFVTFTEHTNAVTALHFM--ANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQ 436
             G C   F  H + V  L  +   N   +++ S D T+  W L           P    
Sbjct: 191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL-----------PKE-- 237
Query: 437 FVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSS 496
             S   D   E       D   +F    +    + +L GH   V  +  S     + S S
Sbjct: 238 --SSVPDHGEE------HDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGS 287
Query: 497 WDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYT 556
           +D T+ +W+V + K       HT  + + +Y  + ++   +++D  I  WD  NGELMYT
Sbjct: 288 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT 347
Query: 557 IEGRRDISGGRLMTDR--RSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQV 614
           ++G   + G   ++D+   SAA   S + +    YS   SY     S+  I  + V+D +
Sbjct: 348 LQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSA--ITTFYVSDNI 405
Query: 615 LL 616
           L+
Sbjct: 406 LV 407

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 84/179 (46%), Gaps = 10/179 (5%)
Query: 338 SESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSG----FCFVTFTEHTNA 393
           +E ++    GH  +V  L ++PD + LA+G +DN V VW  + G        TFT+H  A
Sbjct: 139 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGA 198
Query: 394 VTALHFMANNHSLLS---ASLDGTVRAWDLFRYRNFRTFTTPSSRQFVS-LASDQSGEVI 449
           V A+ +     ++L+    + D  +R W++            S  Q  S L S    E+I
Sbjct: 199 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS--QVCSILWSPHYKELI 256
Query: 450 CAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFE 508
                   ++ +W   T   +  L GH   V  L  SP  AT+AS++ D+T+RLW  FE
Sbjct: 257 SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 85/206 (41%), Gaps = 14/206 (6%)
Query: 368 ADDNKVKVWTVSSG--FCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRN 425
           A DN V +W+ SSG     +   +    ++++ ++   + L   +    V+ WD+ + + 
Sbjct: 42  ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 101
Query: 426 FRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTG-RLLDILSGHEGPVHGLV 484
            R  T+ S+R    + S      I +    S  I    ++     +  LSGH   V GL 
Sbjct: 102 LRNMTSHSAR----VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR 157
Query: 485 FSPTNATLASSSWDKTVRLWNVFEGKGS---VESF-PHTHDVLTVVYRPDGRQLACS--- 537
           ++P    LAS   D  V +W    G+G    +++F  H   V  V + P    +  +   
Sbjct: 158 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 217
Query: 538 TLDGQIHFWDPLNGELMYTIEGRRDI 563
           T D  I  W+  +G  +  ++    +
Sbjct: 218 TSDRHIRIWNVCSGACLSAVDAHSQV 243

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 103/253 (40%), Gaps = 6/253 (2%)
Query: 257 KDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNE 316
           K  FS    +V   D+H     V+    +G   L+     V +  + ++   +    F  
Sbjct: 6   KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 317 LGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVW 376
             NW++ G     ++ V+ + +   ++  + H   +  +A  P    + +G+DD  VK+W
Sbjct: 66  RKNWIIVGSDDF-RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 377 TVSSGFCF-VTFTEHTNAVTALHFMANNHSLL-SASLDGTVRAWDLFRYRNFRTFTTPSS 434
              + +    TF  H + V  + F   + S   S  LD TV+ W L +     T TT   
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 435 R--QFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATL 492
           R   +V          +   + D   I +W  +T   +  L GH   V   VF PT   +
Sbjct: 185 RGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPII 243
Query: 493 ASSSWDKTVRLWN 505
            S S D T+++WN
Sbjct: 244 ISGSEDGTLKIWN 256

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 103/253 (40%), Gaps = 6/253 (2%)
Query: 257 KDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNE 316
           K  FS    +V   D+H     V+    +G   L+     V +  + ++   +    F  
Sbjct: 6   KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 317 LGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVW 376
             NW++ G     ++ V+ + +   ++  + H   +  +A  P    + +G+DD  VK+W
Sbjct: 66  RKNWIIVGSDDF-RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 377 TVSSGFCF-VTFTEHTNAVTALHFMANNHSLL-SASLDGTVRAWDLFRYRNFRTFTTPSS 434
              + +    TF  H + V  + F   + S   S  LD TV+ W L +     T TT   
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 435 R--QFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATL 492
           R   +V          +   + D   I +W  +T   +  L GH   V   VF PT   +
Sbjct: 185 RGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPII 243
Query: 493 ASSSWDKTVRLWN 505
            S S D T+++WN
Sbjct: 244 ISGSEDGTLKIWN 256

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 103/253 (40%), Gaps = 6/253 (2%)
Query: 257 KDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNE 316
           K  FS    +V   D+H     V+    +G   L+     V +  + ++   +    F  
Sbjct: 6   KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 317 LGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVW 376
             NW++ G     ++ V+ + +   ++  + H   +  +A  P    + +G+DD  VK+W
Sbjct: 66  RKNWIIVGSDDF-RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 377 TVSSGFCF-VTFTEHTNAVTALHFMANNHSLL-SASLDGTVRAWDLFRYRNFRTFTTPSS 434
              + +    TF  H + V  + F   + S   S  LD TV+ W L +     T TT   
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 435 R--QFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATL 492
           R   +V          +   + D   I +W  +T   +  L GH   V   VF PT   +
Sbjct: 185 RGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPII 243
Query: 493 ASSSWDKTVRLWN 505
            S S D T+++WN
Sbjct: 244 ISGSEDGTLKIWN 256

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 80/195 (41%), Gaps = 26/195 (13%)
Query: 352 VNCLAYSP--DSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSA 409
           VN + Y P  D   + T +DD  +K+W   +  C  T   H + V+   F      ++S 
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISG 246
Query: 410 SLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGE--VICAGTLDSFEIFVWSMKTG 467
           S DGT++ W+   Y+  +T      R +  +A+  +G    I +G  + F +    +  G
Sbjct: 247 SEDGTLKIWNSSTYKVEKTLNVGLERSWC-IATHPTGRKNYIASGFDNGFTV----LSLG 301
Query: 468 RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGK----------GSVESFP 517
                LS    PV  LV+S      AS  +   +R     E            GSV+ FP
Sbjct: 302 NDEPTLS--LDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFP 359
Query: 518 HTHDVLTVVYRPDGR 532
                 ++ + P+GR
Sbjct: 360 Q-----SLAHSPNGR 369

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 70.1 bits (170), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 123/288 (42%), Gaps = 30/288 (10%)
Query: 333 VWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTN 392
           V++  ++ ++L+  GH   V  L Y+    +L +G+ D  V+VW +  G C   F  H +
Sbjct: 146 VYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNS 204
Query: 393 AVTALHFM--ANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVIC 450
            V  L  +   N   +++ S D T+  W L           P      S   D   E   
Sbjct: 205 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKL-----------PKE----SSVPDHGEE--- 246
Query: 451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGK 510
               D   +F    +    + +L GH   V  +  S     + S S+D T+ +W+V + K
Sbjct: 247 ---HDYPLVFHTPEENPYFVGVLRGHXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQXK 301
Query: 511 GSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMT 570
                  HT  + + +Y  + ++   ++ D  I  WD  NGEL YT++G   + G   ++
Sbjct: 302 CLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLS 361
Query: 571 DR--RSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLL 616
           D+   SAA   S + +    YS   SY     S+  I  + V+D +L+
Sbjct: 362 DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSA--ITTFYVSDNILV 407

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 69.7 bits (169), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 103/253 (40%), Gaps = 6/253 (2%)
Query: 257 KDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNE 316
           K  FS    +V   D+H     V+    +G   ++     V +  + ++   +    F  
Sbjct: 6   KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 317 LGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVW 376
             NW++ G     ++ V+ + +   ++  + H   +  +A  P    + +G+DD  VK+W
Sbjct: 66  RKNWIIVGSDDF-RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 377 TVSSGFCF-VTFTEHTNAVTALHFMANNHSLL-SASLDGTVRAWDLFRYRNFRTFTTPSS 434
              + +    TF  H + V  + F   + S   S  LD TV+ W L +     T TT   
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 435 R--QFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATL 492
           R   +V          +   + D   I +W  +T   +  L GH   V   VF PT   +
Sbjct: 185 RGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPII 243
Query: 493 ASSSWDKTVRLWN 505
            S S D T+++WN
Sbjct: 244 ISGSEDGTLKIWN 256

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 81/200 (40%), Gaps = 26/200 (13%)
Query: 347 GHYFDVNCLAYSP--DSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNH 404
           G    VN + Y P  D   + T +DD  +K+W   +  C  T   H + V+   F     
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 405 SLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGE--VICAGTLDSFEIFVW 462
            ++S S DGT++ W+   Y+  +T      R +  +A+  +G    I +G  + F +   
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWC-IATHPTGRKNYIASGFDNGFTV--- 297
Query: 463 SMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGK----------GS 512
            +  G     LS    PV  LV+S      AS  +   +R     E            GS
Sbjct: 298 -LSLGNDEPTLS--LDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGS 354
Query: 513 VESFPHTHDVLTVVYRPDGR 532
           V+ FP      ++ + P+GR
Sbjct: 355 VDVFPQ-----SLAHSPNGR 369

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 66.2 bits (160), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 107/246 (43%), Gaps = 31/246 (12%)
Query: 352 VNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASL 411
           V CLA+S D   + TG ++ ++++W   +G        H   + ++ +  +   ++S  +
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDV 169
Query: 412 DGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTL---------DSF----- 457
           +     W++      + F    +      A + SG+    G+L         D F     
Sbjct: 170 ENVTILWNVISGTVMQHFELKETGGSSINAENHSGD----GSLGVDVEWVDDDKFVIPGP 225
Query: 458 --EIFVWSMK----TGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKG 511
              IFV+ +     TG+L+    GH GP+  L F+ TN  L S+S D T+R+W+   G  
Sbjct: 226 KGAIFVYQITEKTPTGKLI----GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS 281
Query: 512 SVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWD-PLNGELMYTIEGRRDISGGRLMT 570
               + H+  +++  +  D + ++CS +DG +  W    N  L  +I     I  GR+  
Sbjct: 282 QNCFYGHSQSIVSASWVGDDKVISCS-MDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ 340
Query: 571 DRRSAA 576
           D +  A
Sbjct: 341 DGQKYA 346

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 104/240 (43%), Gaps = 36/240 (15%)
Query: 381 GFCFVTFTEHTNAVTALHF----MANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPS--- 433
           G  F     H +A+ ++ +      N+ ++++ SLD  V+ W   ++R+ R     S   
Sbjct: 22  GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVW---KWRDERLDLQWSLEG 78
Query: 434 -SRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHG--LVFSPTNA 490
                VS+    +  +  + +LD+  I +W ++ G+   I S   GPV    L FSP + 
Sbjct: 79  HQLGVVSVDISHTLPIAASSSLDA-HIRLWDLENGK--QIKSIDAGPVDAWTLAFSPDSQ 135
Query: 491 TLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLN 550
            LA+ +    V ++ V  GK           +L++ Y PDG+ LA   +DG I+ +D   
Sbjct: 136 YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT 195
Query: 551 GELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV 610
           G+L++T+EG                          +L +S D   ++      YI +YDV
Sbjct: 196 GKLLHTLEGH--------------------AMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 29/182 (15%)
Query: 444 QSGEVICAGTLDSFEIFVWSMKTGRLLDI---LSGHEGPVHGLVFSPTNATLASSSWDKT 500
           ++ E +  G+LD   + VW  +  RL D+   L GH+  V  +  S T    ASSS D  
Sbjct: 46  ENSETVVTGSLDDL-VKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103
Query: 501 VRLWNVFEGK--GSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIE 558
           +RLW++  GK   S+++ P   D  T+ + PD + LA  T  G+++ +   +G+  Y+++
Sbjct: 104 IRLWDLENGKQIKSIDAGP--VDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD 161
Query: 559 GRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRR 618
            R                    GK   ++ YS DG Y+ +G     I ++D+A   LL  
Sbjct: 162 TR--------------------GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT 201
Query: 619 FQ 620
            +
Sbjct: 202 LE 203

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 138/305 (45%), Gaps = 35/305 (11%)
Query: 291 YQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYF 350
           +   D VC   L     K+ +  +    NW+V   ++ G+L+VW     + +  Q+ H  
Sbjct: 51  FNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIV-SASQDGRLIVW-----NALTSQKTHAI 104
Query: 351 DVNC-----LAYSPDSQLLATGADDNKVKVWTVSS-----GFCFVT--FTEHTNAVTALH 398
            ++C      A++P+ Q +A G  D+   ++ +SS     G   V+   T H    ++  
Sbjct: 105 KLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQ 164
Query: 399 FMANNHS-LLSASLDGTVRAWDLFRYRNFRTFTT--PS--SRQFVSLASDQ-SGEVICAG 452
           ++ +  + L++ S D T   WD+   +    F +  PS  +   +SL+ +  +  +  +G
Sbjct: 165 YVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISG 224
Query: 453 TLDSFEIFVWSMK-TGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKG 511
           + D+  + +W ++ T R +    GHEG ++ + F P      + S D T RL+++  G  
Sbjct: 225 SCDT-TVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH- 282
Query: 512 SVESF---PHTHD-----VLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
            ++ +   P  +D     V +V +   GR L     +G  + WD L  E++  +   ++ 
Sbjct: 283 QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNS 342
Query: 564 SGGRL 568
             GR+
Sbjct: 343 HEGRI 347

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 89/203 (43%), Gaps = 9/203 (4%)
Query: 313 VFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ---QGHYFDVNCLAYSPDSQLLATGAD 369
            +N  G  L+  C    ++ +W    +S+I K    +GH   V  +A+SP    LA+ + 
Sbjct: 23  AWNPAGT-LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 370 DNKVKVWTVSSG--FCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR 427
           D    +W  +     C  T   H N V ++ +  + + L + S D +V  W++     + 
Sbjct: 82  DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 428 TFTTPSS--RQFVSLASDQSGEVICAGTLD-SFEIFVWSMKTGRLLDILSGHEGPVHGLV 484
             +  +S  +    +    S E++ + + D + +++            L GHE  V  L 
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA 201
Query: 485 FSPTNATLASSSWDKTVRLWNVF 507
           F P+   LAS S D+TVR+W  +
Sbjct: 202 FDPSGQRLASCSDDRTVRIWRQY 224

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 92/202 (45%), Gaps = 12/202 (5%)
Query: 355 LAYSPDSQLLATGADDNKVKVWTVS--SGFCFVTFTE-HTNAVTALHFMANNHSLLSASL 411
           LA++P   LLA+   D ++++W     S  C    +E H   V  + +    + L SAS 
Sbjct: 22  LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 412 DGTVRAWDLFRYRNFRTFTT--PSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTG-- 467
           D T   W   +  +F   TT      +  S+A   SG ++   + D   ++VW +     
Sbjct: 82  DATTCIWKKNQ-DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK-SVWVWEVDEEDE 139
Query: 468 -RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHD--VLT 524
              + +L+ H   V  +V+ P+   LAS+S+D TV+L+   E      +    H+  V +
Sbjct: 140 YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWS 199
Query: 525 VVYRPDGRQLACSTLDGQIHFW 546
           + + P G++LA  + D  +  W
Sbjct: 200 LAFDPSGQRLASCSDDRTVRIW 221

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 92/231 (39%), Gaps = 40/231 (17%)
Query: 406 LLSASLDGTVRAWDLFRYRNFRTFTTPSS-----RQFVS-LASDQSGEVICAGTLDSFEI 459
           L+S S D TV  W L+       F  P         FVS LA  Q      + + D   +
Sbjct: 42  LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDK-TL 100
Query: 460 FVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVF-EGK-GSVESFP 517
            +W ++TG       GH+  V+ + FSP N  + S+  ++ ++LWN+  E K  S E   
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKEN 160
Query: 518 HTHDVLTVVYRPDGRQ----------LACSTLDGQIHFWDPLNGELMYTIEGRRDISGGR 567
           H+  V  V Y P  +            A    DG++  W+  N ++ YT +         
Sbjct: 161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHE------ 213
Query: 568 LMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRR 618
                 S  N         L  S +G YI  GG  K + ++D+ +    +R
Sbjct: 214 ------SNVNH--------LSISPNGKYIATGGKDKKLLIWDILNLTYPQR 250

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 107/247 (43%), Gaps = 14/247 (5%)
Query: 281 VGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES 340
           VG  NG+  +Y +     +  ++  + ++    +N     ++   ++ G +   + R  +
Sbjct: 151 VGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRH---VLSSGSRSGAIHHHDVRIAN 207
Query: 341 Y-ILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHF 399
           + I   QGH  +V  LA+  D   LA+G +DN V++W   S     T T H  AV A+ +
Sbjct: 208 HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAW 267
Query: 400 MANNHSLLS---ASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLA-SDQSGEVICAGTLD 455
                +LL+    ++D  +  W+       R  T  +  Q  SL  S  S E++      
Sbjct: 268 CPWQSNLLATGGGTMDKQIHFWNA--ATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFP 325
Query: 456 SFEIFVWSMKTGRL---LDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGS 512
              + +WS  +  L   +DI   H+  V     SP    L++++ D+ ++ W V++G   
Sbjct: 326 DNNLSIWSYSSSGLTKQVDI-PAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384
Query: 513 VESFPHT 519
               P T
Sbjct: 385 KRPIPIT 391

>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 97/220 (44%), Gaps = 15/220 (6%)
Query: 339 ESYILKQQGHYFD--VNCLAYSP-DSQLLATGADDNKVKVWT--VSSGFCFVTFTEHTNA 393
           +SY + Q+   FD     LA+ P     +A G+    + +W   +     F+       +
Sbjct: 108 DSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGS 167
Query: 394 VTALHFMA-NNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQ--FVSLASDQSGEVIC 450
           +T L F   N +   ++S++GT R  D F+    R F +  +    F SL    S  ++ 
Sbjct: 168 ITGLKFNPLNTNQFYASSMEGTTRLQD-FKGNILRVFASSDTINIWFCSLDVSASSRMVV 226
Query: 451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPT-NATLASSSWDKTVRLWNVFEG 509
            G  D+    +     G+ L  L  H+  V  +  +P  +  LA++S D+TV++W++ + 
Sbjct: 227 TG--DNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQV 284
Query: 510 KGSVE---SFPHTHDVLTVVYRPDGRQLACSTLDGQIHFW 546
           +G      S PH H V    + PDG +L  +    +I  +
Sbjct: 285 RGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 324

>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 436

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 97/220 (44%), Gaps = 15/220 (6%)
Query: 339 ESYILKQQGHYFD--VNCLAYSP-DSQLLATGADDNKVKVWT--VSSGFCFVTFTEHTNA 393
           +SY + Q+   FD     LA+ P     +A G+    + +W   +     F+       +
Sbjct: 107 DSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGS 166
Query: 394 VTALHFMA-NNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQ--FVSLASDQSGEVIC 450
           +T L F   N +   ++S++GT R  D F+    R F +  +    F SL    S  ++ 
Sbjct: 167 ITGLKFNPLNTNQFYASSMEGTTRLQD-FKGNILRVFASSDTINIWFCSLDVSASSRMVV 225
Query: 451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPT-NATLASSSWDKTVRLWNVFEG 509
            G  D+    +     G+ L  L  H+  V  +  +P  +  LA++S D+TV++W++ + 
Sbjct: 226 TG--DNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQV 283
Query: 510 KGSVE---SFPHTHDVLTVVYRPDGRQLACSTLDGQIHFW 546
           +G      S PH H V    + PDG +L  +    +I  +
Sbjct: 284 RGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 323

>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 97/220 (44%), Gaps = 15/220 (6%)
Query: 339 ESYILKQQGHYFD--VNCLAYSP-DSQLLATGADDNKVKVWT--VSSGFCFVTFTEHTNA 393
           +SY + Q+   FD     LA+ P     +A G+    + +W   +     F+       +
Sbjct: 107 DSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGS 166
Query: 394 VTALHFMA-NNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQ--FVSLASDQSGEVIC 450
           +T L F   N +   ++S++GT R  D F+    R F +  +    F SL    S  ++ 
Sbjct: 167 ITGLKFNPLNTNQFYASSMEGTTRLQD-FKGNILRVFASSDTINIWFCSLDVSASSRMVV 225
Query: 451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPT-NATLASSSWDKTVRLWNVFEG 509
            G  D+    +     G+ L  L  H+  V  +  +P  +  LA++S D+TV++W++ + 
Sbjct: 226 TG--DNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQV 283
Query: 510 KGSVE---SFPHTHDVLTVVYRPDGRQLACSTLDGQIHFW 546
           +G      S PH H V    + PDG +L  +    +I  +
Sbjct: 284 RGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 323

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 8/146 (5%)
Query: 471 DILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPD 530
           +I   H   +  L F P+   L SSS D  +++W+V +G        H   V  +     
Sbjct: 130 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR 189
Query: 531 GRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGR------LMTDRRSAANSSSGKCF 584
           GR +  ++LDG I  W+   G  ++T   + +   G       + TDR+    S+S K  
Sbjct: 190 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK-- 247
Query: 585 TTLCYSADGSYILAGGSSKYICMYDV 610
             L +   G Y++AG  S  I +++V
Sbjct: 248 NNLEFGTYGKYVIAGHVSGVITVHNV 273

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 8/146 (5%)
Query: 471 DILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPD 530
           +I   H   +  L F P+   L SSS D  +++W+V +G        H   V  +     
Sbjct: 133 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR 192
Query: 531 GRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGR------LMTDRRSAANSSSGKCF 584
           GR +  ++LDG I  W+   G  ++T   + +   G       + TDR+    S+S K  
Sbjct: 193 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK-- 250
Query: 585 TTLCYSADGSYILAGGSSKYICMYDV 610
             L +   G Y++AG  S  I +++V
Sbjct: 251 NNLEFGTYGKYVIAGHVSGVITVHNV 276

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 126/337 (37%), Gaps = 77/337 (22%)
Query: 371 NKVKVWTVSSGFCFVT--FTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRT 428
           N   V+TV  G    T  +TEH++  T      + +   S  + G VR WD  +  +   
Sbjct: 37  NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK 96
Query: 429 FTTPS-SRQFVSLASDQSGEVICA---GTLDSFEIFVW-------------------SMK 465
            T P  S     ++ D   + I A   G      +F++                     K
Sbjct: 97  TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFK 156
Query: 466 TGRLLDILSGH--------EGP--------------VHGLVFSPTNATLASSSWDKTVRL 503
             R   I+SG         EGP              VH + ++P  +  AS+  D T+ L
Sbjct: 157 PSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVL 216
Query: 504 WNVFEGK-------GSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYT 556
           +N  +G         S+++  H+  V  + + PDG ++A ++ D  I  W+    ++  T
Sbjct: 217 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKT 276
Query: 557 IE-GRR--DISGGRLMTDRRSAANSSSG--------------------KCFTTLCYSADG 593
           I  G R  D   G + T +   + S++G                    K  T L  SADG
Sbjct: 277 IPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG 336
Query: 594 SYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGV 630
             + +  +  +I  +D++  +  R F   H   + G+
Sbjct: 337 KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 373

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 65/161 (40%), Gaps = 4/161 (2%)
Query: 355 LAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGT 414
           LA SPDS++  +   D  + VW + +      F  HT+  + +    +   L +  LD T
Sbjct: 147 LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT 206
Query: 415 VRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS 474
           VR+WDL   R  +     S  Q  SL    +GE +  G ++S  + V  +        L 
Sbjct: 207 VRSWDLREGRQLQQHDFTS--QIFSLGYCPTGEWLAVG-MESSNVEVLHVNKPDKYQ-LH 262
Query: 475 GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVES 515
            HE  V  L F+       S+  D  +  W    G    +S
Sbjct: 263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS 303

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 12/157 (7%)
Query: 403 NHSLLSASLDGTVRAWDL------FRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS 456
           N  LLSAS D T+  WD+       R  + +   T  +     +A     E +     D 
Sbjct: 196 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 255
Query: 457 FEIFVWSMK---TGRLLDILSGHEGPVHGLVFSP-TNATLASSSWDKTVRLWNVFEGKGS 512
            ++ +W  +   T +    +  H   V+ L F+P +   LA+ S DKTV LW++   K  
Sbjct: 256 QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 315
Query: 513 VESFP-HTHDVLTVVYRPDGRQ-LACSTLDGQIHFWD 547
           + SF  H  ++  V + P     LA S  D ++H WD
Sbjct: 316 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 352

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 12/157 (7%)
Query: 403 NHSLLSASLDGTVRAWDL------FRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS 456
           N  LLSAS D T+  WD+       R  + +   T  +     +A     E +     D 
Sbjct: 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 253
Query: 457 FEIFVWSMK---TGRLLDILSGHEGPVHGLVFSP-TNATLASSSWDKTVRLWNVFEGKGS 512
            ++ +W  +   T +    +  H   V+ L F+P +   LA+ S DKTV LW++   K  
Sbjct: 254 QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 313
Query: 513 VESFP-HTHDVLTVVYRPDGRQ-LACSTLDGQIHFWD 547
           + SF  H  ++  V + P     LA S  D ++H WD
Sbjct: 314 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 350

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 12/157 (7%)
Query: 403 NHSLLSASLDGTVRAWDL------FRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS 456
           N  LLSAS D T+  WD+       R  + +   T  +     +A     E +     D 
Sbjct: 198 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 257
Query: 457 FEIFVWSMK---TGRLLDILSGHEGPVHGLVFSP-TNATLASSSWDKTVRLWNVFEGKGS 512
            ++ +W  +   T +    +  H   V+ L F+P +   LA+ S DKTV LW++   K  
Sbjct: 258 QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 317
Query: 513 VESFP-HTHDVLTVVYRPDGRQ-LACSTLDGQIHFWD 547
           + SF  H  ++  V + P     LA S  D ++H WD
Sbjct: 318 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 354

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 68/174 (39%), Gaps = 47/174 (27%)
Query: 342 ILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGF-------CFVTFTEHTNAV 394
           +L +  H   +  +A+ P + LLA G+ D+ V +W                    H N V
Sbjct: 51  VLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEV 110
Query: 395 TALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTL 454
             + +  + + L + S D +V  W+                      +D+SGE       
Sbjct: 111 KGVAWSNDGYYLATCSRDKSVWIWE----------------------TDESGE------- 141
Query: 455 DSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFE 508
             +E           + +L  H   V  +++ P+ A LASSS+D TVR+W  ++
Sbjct: 142 -EYE----------CISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD 184

>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43 Length = 399

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 327 KLGQLLVWEWRSE----SYILKQQGHYFDVNCLAYSPDSQ-LLATGADDNKVKVWTVSSG 381
            +GQL +W++R +    S IL   G    ++C+   P+ Q ++ATG  D  + +W V  G
Sbjct: 210 SIGQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQG 269
Query: 382 FCFVTFTE-HTNAVTALHFMANN-HSLLSASLDGTVRAWD 419
              V+  + H   +  +HF  +N   L + S DG++  WD
Sbjct: 270 TMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 322 VFGCAKLGQ-LLVWEWRSESYILKQQ---GHYFDVNCLAYSPDSQ-LLATGADDNKVKVW 376
           +FG     Q L++W+ RS +          H  +VNCL+++P S+ +LATG+ D  V +W
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 301
Query: 377 TVSS-GFCFVTFTEHTNAVTALHFMANNHSLLSAS-LDGTVRAWDLFR 422
            + +      +F  H + +  + +  +N ++L++S  D  +  WDL +
Sbjct: 302 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSK 349

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 12/154 (7%)
Query: 406 LLSASLDGTVRAWDLF------RYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEI 459
           LLSAS D T+  WD+       +  + +T  T  +     ++     E +     D  ++
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKL 252
Query: 460 FVW---SMKTGRLLDILSGHEGPVHGLVFSP-TNATLASSSWDKTVRLWNVFEGKGSVES 515
            +W   S  T +    +  H   V+ L F+P +   LA+ S DKTV LW++   K  + S
Sbjct: 253 MIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 312
Query: 516 FP-HTHDVLTVVYRPDGRQ-LACSTLDGQIHFWD 547
           F  H  ++  V + P     LA S  D +++ WD
Sbjct: 313 FESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 12/154 (7%)
Query: 406 LLSASLDGTVRAWDLF------RYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEI 459
           LLSAS D TV  WD+       +  + +   T  S     +A     E +     D  ++
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 460 FVWSMK---TGRLLDILSGHEGPVHGLVFSP-TNATLASSSWDKTVRLWNVFEGKGSVES 515
            +W  +   T +   ++  H   V+ L F+P +   LA+ S DKTV LW++   K  + +
Sbjct: 255 MIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT 314
Query: 516 FP-HTHDVLTVVYRPDGRQ-LACSTLDGQIHFWD 547
           F  H  ++  V + P     LA S  D +++ WD
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 75/181 (41%), Gaps = 18/181 (9%)
Query: 390 HTNAVTALHFMANNHSLL-SASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEV 448
           H  +V  + +  ++  +  S+S D T++ WD    +    F    +     ++   +   
Sbjct: 98  HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHC 157
Query: 449 ICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPT-NATLASSSWDKTVRLWNVF 507
           + A      ++ +  +K+G    IL GH   +  + +SP  +  LA++S D  V+LW+V 
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 508 EGKG--------------SVESFPHTHD--VLTVVYRPDGRQLACSTLDGQIHFWDPLNG 551
              G              +VES    H+  V  + +  DG  L     D ++  W+  NG
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277
Query: 552 E 552
           E
Sbjct: 278 E 278

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 12/154 (7%)
Query: 406 LLSASLDGTVRAWDLF------RYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEI 459
           LLSAS D TV  WD+       +  + +   T  S     +A     E +     D  ++
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 460 FVWSMK---TGRLLDILSGHEGPVHGLVFSP-TNATLASSSWDKTVRLWNVFEGKGSVES 515
            +W  +   T +   ++  H   V+ L F+P +   LA+ S DKTV LW++   K  + +
Sbjct: 255 XIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT 314
Query: 516 FP-HTHDVLTVVYRPDGRQ-LACSTLDGQIHFWD 547
           F  H  ++  V + P     LA S  D +++ WD
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 96/250 (38%), Gaps = 30/250 (12%)
Query: 318 GNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSP-DSQLLATGADDNKVKVW 376
           G +LV    K G       R +  +    GH   V  +A+ P +  ++A+G++D  V VW
Sbjct: 57  GAFLVLPLGKTG-------RVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVW 109
Query: 377 TVSSGFC-------FVTFTEHTN--AVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR 427
            +  G          +T   HT    + A H  A N  LLSA  D  +  WD+       
Sbjct: 110 EIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGXDNVILVWDVGTGAAVL 168
Query: 428 TF---TTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEG--PVHG 482
           T      P +   V  + D  G +IC    D     +   K   + +    HEG  PVH 
Sbjct: 169 TLGPDVHPDTIYSVDWSRD--GALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHA 226
Query: 483 LVFSPTN--ATLASSSWDKTVRLWNV--FEGKGSVESFPHTHDVLTVVYRPDGRQL-ACS 537
           +  S      T  S   ++ V LW+    E   S++    +  VL   + PD   +  C 
Sbjct: 227 VFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCG 286
Query: 538 TLDGQIHFWD 547
             D  I +++
Sbjct: 287 KGDSSIRYFE 296

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 87/221 (39%), Gaps = 23/221 (10%)
Query: 347 GHYFDVNCLAYSP-DSQLLATGADDNKVKVWTVSSGFC-------FVTFTEHTN--AVTA 396
           GH   V  +A+ P +  ++A+G++D  V VW +  G          +T   HT    + A
Sbjct: 79  GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 397 LHFMANNHSLLSASLDGTVRAWDLFRYRNFRTF---TTPSSRQFVSLASDQSGEVICAGT 453
            H  A N  LLSA  D  +  WD+       T      P +   V  + D  G +IC   
Sbjct: 139 WHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD--GALICTSC 195
Query: 454 LDSFEIFVWSMKTGRLLDILSGHEG--PVHGLVFSPTN--ATLASSSWDKTVRLWNV--F 507
            D     +   K   + +    HEG  PVH +  S      T  S   ++ V LW+    
Sbjct: 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHL 255
Query: 508 EGKGSVESFPHTHDVLTVVYRPDGRQL-ACSTLDGQIHFWD 547
           E   S++    +  VL   + PD   +  C   D  I +++
Sbjct: 256 EEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFE 296

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	860
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.98
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.98
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.98
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.98
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.98
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.98
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.95
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.95
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.91
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.9
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.9
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.9
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.89
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.89
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.89
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.89
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.88
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.87
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.86
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.85
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.84
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.84
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.84
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.84
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.83
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.82
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.82
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.81
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.8
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.78
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.78
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.78
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.77
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.77
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.76
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.75
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.74
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.73
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.73
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.73
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.73
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.73
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.73
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.72
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.72
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.72
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.72
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.71
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.71
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.71
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.7
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.69
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.69
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.68
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.68
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.68
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.66
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.65
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.65
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.65
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.64
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.64
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.63
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.62
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.62
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.62
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.61
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.56
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.55
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.53
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.52
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.51
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.5
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.49
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.49
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.48
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.47
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.46
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.46
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.45
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.44
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.43
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.41
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.4
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.4
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.4
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.4
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.4
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.4
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.39
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.39
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.37
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.36
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.34
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.34
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.33
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.33
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.31
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.29
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.28
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.23
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.22
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.2
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.19
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.19
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.19
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.19
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.14
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.1
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.1
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.09
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.09
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.09
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.04
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.03
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.0
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.99
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.91
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.89
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.89
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.87
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.86
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.84
3ott_A	758	Two-component system sensor histidine kinase; beta	98.82
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.82
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.82
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.76
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.74
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.73
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.73
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.73
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.73
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.71
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.71
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.69
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.69
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.67
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.65
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.64
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.6
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.6
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.57
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.56
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.55
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.54
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.53
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.49
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.49
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.49
3ott_A	758	Two-component system sensor histidine kinase; beta	98.42
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.4
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.39
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.37
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.33
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.31
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.3
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.28
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.25
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.22
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.14
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.12
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.99
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.93
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.92
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.91
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.87
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.87
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.8
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.8
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.74
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.7
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.68
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.68
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.6
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.58
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.55
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.54
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.53
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.52
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.51
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.5
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.46
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.45
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	97.43
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.43
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.39
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.37
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.3
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.26
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.18
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.15
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.13
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.12
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.08
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.94
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.92
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.9
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.88
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.87
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.87
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.79
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.38
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.33
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.72
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.35
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	93.8
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	93.43
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	92.78
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	89.87
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	88.85
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	88.37
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	88.32
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	87.0
1k8k_G	151	P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-	86.66
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	86.45
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	85.38
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	85.14
3dwl_G	152	Actin-related protein 2/3 complex subunit 5; prope	85.05
2vxg_A	139	LD41624, GE-1, CG6181-PA, isoform A; decapping, ED	84.13
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	82.83
1wp5_A	323	Topoisomerase IV; broken beta-propeller, hairpin-i	81.2

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.5e-69  Score=608.22  Aligned_cols=563  Identities=24%  Similarity=0.405  Sum_probs=495.1

Q ss_pred             cccccccccCCcEEEe-CCCEEEeeeC-CeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEccc
Q 038577            6 QNLLGAPYRGGNAVLS-QNTKLISPVG-NRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHC   83 (860)
Q Consensus         6 ~~~~g~~~~~~~~~~s-dg~~l~~~~~-~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~   83 (860)
                      ..+-|+-.....++|| ||++||++++ +.|+|||. +++....+.+|...|++++|||||++||+++.|++|+|||. +
T Consensus        10 ~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~   87 (577)
T 2ymu_A           10 NRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-N   87 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-T
T ss_pred             eEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-C
Confidence            3455666666789999 9999999865 78999995 67777778899999999999999999999999999999996 5


Q ss_pred             CeEEEEee-cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeec
Q 038577           84 HVVLHRVR-FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSK  161 (860)
Q Consensus        84 ~~~~~~~~-~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~  161 (860)
                      ++.+..+. |..+|.+++|+||+++|+++ .++.+++|+.....        .....+|...+.++.|+|++..+++++.
T Consensus        88 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~~~~~~  159 (577)
T 2ymu_A           88 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL--------LQTLTGHSSSVWGVAFSPDGQTIASASD  159 (577)
T ss_dssp             SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCE--------EEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccce--------eeeccCCCCceeeeeeecCCccceeccc
Confidence            67777776 89999999999999999998 78999999977653        5677889999999999999999999999


Q ss_pred             CCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCC
Q 038577          162 DLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPS  241 (860)
Q Consensus       162 dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~  241 (860)
                      ++.+++|+....       .......|...|..+.|+|++.     ++++++.|+.+++|+....               
T Consensus       160 ~~~~~~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~-----~l~~~~~d~~v~~w~~~~~---------------  212 (577)
T 2ymu_A          160 DKTVKLWNRNGQ-------LLQTLTGHSSSVWGVAFSPDGQ-----TIASASDDKTVKLWNRNGQ---------------  212 (577)
T ss_dssp             TSEEEEECTTSC-------EEEEEECCSSCEEEEEECTTSS-----CEEEEETTSEEEEECTTSC---------------
T ss_pred             ccceecccccee-------eeeeccCCCcceeeeeecCCCC-----EEEEEcCCCEEEEEeCCCc---------------
Confidence            999999986544       4567788999999999999999     9999999999999986432               


Q ss_pred             CCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEE
Q 038577          242 PGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWL  321 (860)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  321 (860)
                                    ....+..+...|.+++|+|+++++++++.+|.|++|+. +++.+..+..+...+.+++|+|+++.+
T Consensus       213 --------------~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l  277 (577)
T 2ymu_A          213 --------------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTI  277 (577)
T ss_dssp             --------------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             --------------EEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEE
Confidence                          12334567889999999999999999999999999997 677888899999999999999999999


Q ss_pred             EEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEee
Q 038577          322 VFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMA  401 (860)
Q Consensus       322 ~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~  401 (860)
                      ++++.+ +.+++|+.. ++....+.+|...|.+++|+|+++.+++++.|+.|++||.. +..+..+..|...+.+++|+|
T Consensus       278 ~~~~~d-~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~  354 (577)
T 2ymu_A          278 ASASDD-KTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSP  354 (577)
T ss_dssp             EEEETT-SCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECT
T ss_pred             EEEeCC-CEEEEEeCC-CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECC
Confidence            988776 999999964 56677788999999999999999999999999999999976 455677889999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeE
Q 038577          402 NNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVH  481 (860)
Q Consensus       402 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~  481 (860)
                      +++++++++.|+.+++||. +++....+.. +...+.+++++|+++++++++.|+ .|++||. +++.+..+.+|...|+
T Consensus       355 ~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~-~~~~v~~~~~s~dg~~l~~~~~d~-~v~~~~~-~~~~~~~~~~~~~~v~  430 (577)
T 2ymu_A          355 DGQTIASASDDKTVKLWNR-NGQLLQTLTG-HSSSVRGVAFSPDGQTIASASDDK-TVKLWNR-NGQLLQTLTGHSSSVW  430 (577)
T ss_dssp             TSSEEEEEETTSEEEEEET-TCCEEEEEEC-CSSCEEEEEECTTSSCEEEEETTS-EEEEECT-TCCEEEEEECCSSCEE
T ss_pred             CCCEEEEEeCCCEEEEEcC-CCCEEEEecC-CCCCeEEEEECCCCCEEEEEeCCC-EEEEEeC-CCCEEEEecCCCCCeE
Confidence            9999999999999999995 5566666554 456899999999999999999998 9999995 5788899999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEeccc
Q 038577          482 GLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRR  561 (860)
Q Consensus       482 ~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  561 (860)
                      +++|+|++++|++++.|+.|++||.. ++....+..|...|++++|+|++++|++++.|+.|++||. +++++..+.+|.
T Consensus       431 ~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~  508 (577)
T 2ymu_A          431 GVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS  508 (577)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCS
T ss_pred             EEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCC
Confidence            99999999999999999999999964 4557777889999999999999999999999999999995 788889998886


Q ss_pred             ccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeecccccccceeeeccCCCCCC
Q 038577          562 DISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTE  641 (860)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  641 (860)
                      .                    .|++++|+|||++|++++.||.|++||. +++++..+.                     
T Consensus       509 ~--------------------~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~---------------------  546 (577)
T 2ymu_A          509 S--------------------SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT---------------------  546 (577)
T ss_dssp             S--------------------CEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE---------------------
T ss_pred             C--------------------CEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc---------------------
Confidence            5                    5999999999999999999999999996 556555432                     


Q ss_pred             CCCCccccCCCCCccccccccccCccccCCCCCCCCCCCCccceeEEEECCCCCeEEEeccccE-EEEe
Q 038577          642 AGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGV-LVYS  709 (860)
Q Consensus       642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~-~i~~  709 (860)
                                                            .|..+|.+++|+|||++|++++.||. .+|+
T Consensus       547 --------------------------------------~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          547 --------------------------------------GHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             --------------------------------------CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             --------------------------------------CCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence                                                  12347899999999999999999995 4895

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.8e-69  Score=610.42  Aligned_cols=565  Identities=14%  Similarity=0.148  Sum_probs=464.0

Q ss_pred             cEEEe-CCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCe--EEEEee-c
Q 038577           17 NAVLS-QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHV--VLHRVR-F   92 (860)
Q Consensus        17 ~~~~s-dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~--~~~~~~-~   92 (860)
                      .++|| ||++|+++.++.|++||+.+++....+.+|...|++++|||||++||+++.|++|+|||+.+++  ....+. |
T Consensus        23 ~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~  102 (611)
T 1nr0_A           23 VLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVF  102 (611)
T ss_dssp             CCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECS
T ss_pred             EEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeeccc
Confidence            58899 9999999999999999999998888888999999999999999999999999999999997543  344555 8


Q ss_pred             CCceeEEEECCCCCEEEEEeC-----CeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCC-eEEEeecCCeEE
Q 038577           93 KYPVNAILFSPNGKYIAVGTG-----KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSN-YLLVGSKDLAVR  166 (860)
Q Consensus        93 ~~~v~~~~fspdg~~la~~~~-----~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~-~l~s~~~dg~v~  166 (860)
                      .++|.+++|+|||++||++++     +.|++||.  ++.       ...+.+|.+.|.+++|+|++. .|++++.|++|+
T Consensus       103 ~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~-------~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~  173 (611)
T 1nr0_A          103 SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTS-------NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA  173 (611)
T ss_dssp             SSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCB-------CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEE
T ss_pred             CCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCC-------cceecCCCCCceEEEECCCCCeEEEEEeCCCeEE
Confidence            899999999999999998843     36777774  331       356789999999999999987 599999999999


Q ss_pred             EEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCc
Q 038577          167 LFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPE  246 (860)
Q Consensus       167 vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~  246 (860)
                      +||....      .....+.+|.+.|.+++|+|+++     +|++++.|++|++||..++...                 
T Consensus       174 lwd~~~~------~~~~~l~~H~~~V~~v~fspdg~-----~las~s~D~~i~lwd~~~g~~~-----------------  225 (611)
T 1nr0_A          174 IFEGPPF------KFKSTFGEHTKFVHSVRYNPDGS-----LFASTGGDGTIVLYNGVDGTKT-----------------  225 (611)
T ss_dssp             EEETTTB------EEEEEECCCSSCEEEEEECTTSS-----EEEEEETTSCEEEEETTTCCEE-----------------
T ss_pred             EEECCCC------eEeeeeccccCceEEEEECCCCC-----EEEEEECCCcEEEEECCCCcEe-----------------
Confidence            9998776      56778899999999999999999     9999999999999998765320                 


Q ss_pred             ceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecC---ceeEEEEEeeCCCEEEE
Q 038577          247 RRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISR---EKITTAVFNELGNWLVF  323 (860)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~---~~i~~~~~s~~~~~l~~  323 (860)
                         ..+. .......+|...|.+++|+|++++|++++.|+.|++||+.+++....+..+.   .....+.|  ++..+++
T Consensus       226 ---~~~~-~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s  299 (611)
T 1nr0_A          226 ---GVFE-DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVS  299 (611)
T ss_dssp             ---EECB-CTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEE
T ss_pred             ---eeec-cccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEE
Confidence               0000 0001122688899999999999999999999999999999999888876542   23445555  7788888


Q ss_pred             EEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe-ecCCCceEEEEEeeC
Q 038577          324 GCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTF-TEHTNAVTALHFMAN  402 (860)
Q Consensus       324 ~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~  402 (860)
                      ++.+ +.+++|+...+.....+.+|...|.+++|+|+|++|++++.|+.|++||+.++.....+ ..|...|.+++|+++
T Consensus       300 ~s~d-~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~  378 (611)
T 1nr0_A          300 ISAN-GFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK  378 (611)
T ss_dssp             EETT-CCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT
T ss_pred             EeCC-CcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCC
Confidence            7765 99999999999888888999999999999999999999999999999999999887765 579999999999976


Q ss_pred             CCEEEEEeCCCcEEEEEccccceeeE--eeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCe
Q 038577          403 NHSLLSASLDGTVRAWDLFRYRNFRT--FTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPV  480 (860)
Q Consensus       403 ~~~l~s~~~dg~i~~wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v  480 (860)
                      + .+++++.|+.+++|++.+......  ...........++++|+|..++++.. + .+++|+  .++ +..+. |...+
T Consensus       379 ~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~-~-~v~~~~--~~~-~~~~~-~~~~v  451 (611)
T 1nr0_A          379 G-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY-K-HIAIYS--HGK-LTEVP-ISYNS  451 (611)
T ss_dssp             S-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEES-S-EEEEEE--TTE-EEEEE-CSSCE
T ss_pred             C-cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeC-c-eEEEEe--CCc-eeeee-cCCCc
Confidence            6 788999999999999876543210  00111234578899999988887754 4 799998  344 55554 88899


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEccCCcce-eEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCC-CceeEE--
Q 038577          481 HGLVFSPTNATLASSSWDKTVRLWNVFEGKGS-VESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLN-GELMYT--  556 (860)
Q Consensus       481 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~--  556 (860)
                      .+++|+|||++|++++.|++|++||+.++... .....|...|++++|+|||++|++++.|++|++||+.+ ++....  
T Consensus       452 ~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~  531 (611)
T 1nr0_A          452 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS  531 (611)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC
T ss_pred             eEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeee
Confidence            99999999999999999999999999876421 22367999999999999999999999999999999987 554332  


Q ss_pred             EecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeecccccccceeeeccC
Q 038577          557 IEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNS  636 (860)
Q Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  636 (860)
                      ..+|.                    ..|.+++|+|||++|++++.|++|++||+.++.....                  
T Consensus       532 ~~~H~--------------------~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~------------------  573 (611)
T 1nr0_A          532 WTFHT--------------------AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI------------------  573 (611)
T ss_dssp             CCCCS--------------------SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCE------------------
T ss_pred             eeecc--------------------cceeEEEECCCCCEEEEEECCCcEEEEECCCcccccc------------------
Confidence            11233                    4699999999999999999999999999987531100                  


Q ss_pred             CCCCCCCCCccccCCCCCccccccccccCccccCCCCCCCCCCCC-ccceeEEEECCCCCeEEEeccccEE-EEec
Q 038577          637 KNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRP-TIQTKCLKIAPTGRNFVAATTEGVL-VYSI  710 (860)
Q Consensus       637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~spdg~~~~~~~~~g~~-i~~~  710 (860)
                                                      ..+       ..| ...|.+++|+|||+ +++++.||.+ +|++
T Consensus       574 --------------------------------~~~-------~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~  609 (611)
T 1nr0_A          574 --------------------------------IIK-------GAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV  609 (611)
T ss_dssp             --------------------------------EET-------TSSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred             --------------------------------hhh-------ccCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence                                            000       112 34799999999999 9999999955 9986

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.1e-65  Score=580.47  Aligned_cols=529  Identities=25%  Similarity=0.429  Sum_probs=467.1

Q ss_pred             EEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee-cCCceeEEEECCCCCEEEEE-eCCeEEEEeC
Q 038577           44 TVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-FKYPVNAILFSPNGKYIAVG-TGKLVQIWRS  121 (860)
Q Consensus        44 ~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~fspdg~~la~~-~~~~i~iwd~  121 (860)
                      ++..+.||.+.|++++|||||++||+++.|+.|+|||. ++++++.+. |..+|++++|+|||++||++ .|+.|+|||.
T Consensus         8 e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~   86 (577)
T 2ymu_A            8 ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR   86 (577)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             EeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            44557799999999999999999999999999999995 678888887 99999999999999999998 7899999996


Q ss_pred             CCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCC
Q 038577          122 PGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDK  201 (860)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~  201 (860)
                      .+ +       ++..+.+|.+.|.+++|+||+++|++++.|+.+++|+....       ......+|...+..+.++|++
T Consensus        87 ~~-~-------~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~  151 (577)
T 2ymu_A           87 NG-Q-------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ-------LLQTLTGHSSSVWGVAFSPDG  151 (577)
T ss_dssp             TS-C-------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCC-------EEEEECCCSSCEEEEEECTTS
T ss_pred             CC-C-------EEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccc-------eeeeccCCCCceeeeeeecCC
Confidence            53 3       47889999999999999999999999999999999997654       566778899999999999999


Q ss_pred             CCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEE
Q 038577          202 KTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVV  281 (860)
Q Consensus       202 ~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  281 (860)
                      .     .+++++.++.+++|+....                             .......+...+.++.++|+++++++
T Consensus       152 ~-----~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~  197 (577)
T 2ymu_A          152 Q-----TIASASDDKTVKLWNRNGQ-----------------------------LLQTLTGHSSSVWGVAFSPDGQTIAS  197 (577)
T ss_dssp             S-----CEEEEETTSEEEEECTTSC-----------------------------EEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred             c-----cceecccccceecccccee-----------------------------eeeeccCCCcceeeeeecCCCCEEEE
Confidence            9     9999999999999986542                             12233456778999999999999999


Q ss_pred             EEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCC
Q 038577          282 GFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDS  361 (860)
Q Consensus       282 ~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~  361 (860)
                      ++.||.|++|+. +++.+..+..+...+.+++|+|+++.+++++.+ +.+++||. +++.+..+.+|...|.+++|+|++
T Consensus       198 ~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d-~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~  274 (577)
T 2ymu_A          198 ASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD-KTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDG  274 (577)
T ss_dssp             EETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETT-SCEEEECT-TSCEEEEECCCSSCEEEEEECTTS
T ss_pred             EcCCCEEEEEeC-CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCC-CEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCC
Confidence            999999999996 678888899999999999999999999988776 99999996 456777888999999999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEE
Q 038577          362 QLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLA  441 (860)
Q Consensus       362 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  441 (860)
                      +.+++++.|+.|++|+. +++....+.+|...|.+++|+|+++.+++++.|+.+++||+... ....+. .+...+.+++
T Consensus       275 ~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~~~~-~~~~~v~~~~  351 (577)
T 2ymu_A          275 QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQTLT-GHSSSVWGVA  351 (577)
T ss_dssp             SEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEEEEC-CCSSCEEEEE
T ss_pred             CEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eeEEEe-CCCCCEEEEE
Confidence            99999999999999996 56778889999999999999999999999999999999998654 344443 3456899999


Q ss_pred             ECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCC
Q 038577          442 SDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHD  521 (860)
Q Consensus       442 ~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  521 (860)
                      ++|+++++++++.++ .+++||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++....+..|...
T Consensus       352 ~s~~g~~l~~~~~dg-~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~  428 (577)
T 2ymu_A          352 FSPDGQTIASASDDK-TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS  428 (577)
T ss_dssp             ECTTSSEEEEEETTS-EEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSC
T ss_pred             ECCCCCEEEEEeCCC-EEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCC
Confidence            999999999999998 9999995 57888999999999999999999999999999999999996 45557777889999


Q ss_pred             eEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecC
Q 038577          522 VLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGS  601 (860)
Q Consensus       522 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~  601 (860)
                      |++++|+||+++|++++.|+.|++||. +++.+..+.+|..                    .|++++|+|||++|++++.
T Consensus       429 v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~--------------------~v~~~~~spd~~~las~~~  487 (577)
T 2ymu_A          429 VWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSS--------------------SVRGVAFSPDGQTIASASD  487 (577)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSS--------------------CEEEEEECTTSCEEEEEET
T ss_pred             eEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCC--------------------CEEEEEEcCCCCEEEEEeC
Confidence            999999999999999999999999996 6778888888765                    5999999999999999999


Q ss_pred             CCeEEEEECCCceEEEEEeecccccccceeeeccCCCCCCCCCCccccCCCCCccccccccccCccccCCCCCCCCCCCC
Q 038577          602 SKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRP  681 (860)
Q Consensus       602 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  681 (860)
                      |+.|++||. ++++++.+..                                                           +
T Consensus       488 d~~i~iw~~-~~~~~~~~~~-----------------------------------------------------------h  507 (577)
T 2ymu_A          488 DKTVKLWNR-NGQLLQTLTG-----------------------------------------------------------H  507 (577)
T ss_dssp             TSEEEEEET-TSCEEEEEEC-----------------------------------------------------------C
T ss_pred             CCEEEEEcC-CCCEEEEEeC-----------------------------------------------------------C
Confidence            999999995 5665554321                                                           1


Q ss_pred             ccceeEEEECCCCCeEEEeccccEE-EEecCC
Q 038577          682 TIQTKCLKIAPTGRNFVAATTEGVL-VYSIDE  712 (860)
Q Consensus       682 ~~~~~~~~~spdg~~~~~~~~~g~~-i~~~~~  712 (860)
                      ..+|++++|+|||+++++++.||.+ +|+...
T Consensus       508 ~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~  539 (577)
T 2ymu_A          508 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNG  539 (577)
T ss_dssp             SSCEEEEEECTTSSCEEEEETTSEEEEECTTS
T ss_pred             CCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC
Confidence            2368999999999999999999955 998653

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.6e-62  Score=560.08  Aligned_cols=544  Identities=13%  Similarity=0.170  Sum_probs=476.4

Q ss_pred             CCcEEEe-CCCEEEeeeCCeEEEEECCCC----cEEeeccCCccC-eeEEEEcC--CCCEEEEEcCCCcEEEEEcccC--
Q 038577           15 GGNAVLS-QNTKLISPVGNRVSVTDLIKS----KTVTLPVESSSN-ICRIAVSP--DGTFLLTVDENQRCHFINLHCH--   84 (860)
Q Consensus        15 ~~~~~~s-dg~~l~~~~~~~i~v~d~~~~----~~~~~~~~h~~~-v~~va~sp--dg~~la~~~~d~~i~vwd~~~~--   84 (860)
                      ...++|+ ||++|+++.++.|++||+.++    +....+.+|... |++++|+|  +|++||+++.||.|++||+.++  
T Consensus        21 v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~  100 (615)
T 1pgu_A           21 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKE  100 (615)
T ss_dssp             CCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGG
T ss_pred             eeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcc
Confidence            4479999 999999999999999999998    777778899999 99999999  9999999999999999999855  


Q ss_pred             ------eEEEEee-cCCceeEEEECCCCCEEEEEeC-----CeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCC
Q 038577           85 ------VVLHRVR-FKYPVNAILFSPNGKYIAVGTG-----KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPD  152 (860)
Q Consensus        85 ------~~~~~~~-~~~~v~~~~fspdg~~la~~~~-----~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d  152 (860)
                            +.+..+. |..+|.+++|+|++++|+++.+     +.|.+||  .++       ....+.+|...|.+++|+|+
T Consensus       101 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~-------~~~~~~~~~~~v~~~~~~~~  171 (615)
T 1pgu_A          101 SNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGN-------SLGEVSGHSQRINACHLKQS  171 (615)
T ss_dssp             GTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCC-------EEEECCSCSSCEEEEEECSS
T ss_pred             cccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCC-------cceeeecCCccEEEEEECCC
Confidence                  6666666 8999999999999999999944     5788887  333       46788999999999999999


Q ss_pred             CC-eEEEeecCCeEEEEeecccccCcccccceEeecCCC---cEEEEEEccC-CCCCccceEEEEcCCccEEEeeecCCC
Q 038577          153 SN-YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRD---SVVGCFFSVD-KKTDKVNRIYTIARDCYMFSWGFSGND  227 (860)
Q Consensus       153 ~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~---~i~~~~~~~~-~~~~~~~~l~s~~~dg~i~~w~~~~~~  227 (860)
                      ++ .+++++.|+.|++||..+.      .....+.+|..   .|.+++|+|+ ++     ++++++.||.|++||+.++.
T Consensus       172 ~~~~l~~~~~d~~v~vwd~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~l~~~~~dg~i~vwd~~~~~  240 (615)
T 1pgu_A          172 RPMRSMTVGDDGSVVFYQGPPF------KFSASDRTHHKQGSFVRDVEFSPDSGE-----FVITVGSDRKISCFDGKSGE  240 (615)
T ss_dssp             SSCEEEEEETTTEEEEEETTTB------EEEEEECSSSCTTCCEEEEEECSTTCC-----EEEEEETTCCEEEEETTTCC
T ss_pred             CCcEEEEEeCCCcEEEEeCCCc------ceeeeecccCCCCceEEEEEECCCCCC-----EEEEEeCCCeEEEEECCCCC
Confidence            98 7999999999999999887      66788889999   9999999999 88     99999999999999998753


Q ss_pred             CCCccccCCCCCCCCCCCcceeeeEEeeeeccc-c---CCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEe
Q 038577          228 GKIDETMEDSEPPSPGTPERRVKKWGLLRKDDF-S---QAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLS  303 (860)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~  303 (860)
                      .                            ...+ .   .|...|.+++|+ +++++++++.||.|++||+.+++.+..+.
T Consensus       241 ~----------------------------~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  291 (615)
T 1pgu_A          241 F----------------------------LKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWT  291 (615)
T ss_dssp             E----------------------------EEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             E----------------------------eEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence            2                            1222 3   678899999999 99999999999999999999999998888


Q ss_pred             ec----CceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 038577          304 IS----REKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVS  379 (860)
Q Consensus       304 ~~----~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  379 (860)
                      .+    ...+.++.|+ ++..+++++.+ |.+++||+.+++.+..+.+|...|.+++| |+   +++++.||.|++|++.
T Consensus       292 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~-g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~  365 (615)
T 1pgu_A          292 LDKQQLGNQQVGVVAT-GNGRIISLSLD-GTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSS  365 (615)
T ss_dssp             CCTTCGGGCEEEEEEE-ETTEEEEEETT-SCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTT
T ss_pred             CCCCcccCceeEEEeC-CCCeEEEEECC-CCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEch
Confidence            77    3567788886 88888888776 99999999999999999999999999999 88   9999999999999988


Q ss_pred             CCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeE
Q 038577          380 SGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEI  459 (860)
Q Consensus       380 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i  459 (860)
                         .+.  ..|...|.+++| +++..+++++.|+.+++|++.+.+...        .+.+++++|++.+++++ .++ .+
T Consensus       366 ---~~~--~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~--------~~~~~~~s~~~~~~~~~-~~~-~~  429 (615)
T 1pgu_A          366 ---SMH--QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS--------QPKVASANNDGFTAVLT-NDD-DL  429 (615)
T ss_dssp             ---EEE--CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS--------CEEEEEECSSSEEEEEE-TTS-EE
T ss_pred             ---hhc--CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC--------CceEEEEcCCCCEEEEe-CCC-ce
Confidence               333  789999999999 667899999999999999987765433        56889999999988887 555 89


Q ss_pred             EEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEEccCCcce-eEEcccCCCeEEEEEeeCCCEEEEE
Q 038577          460 FVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSW-DKTVRLWNVFEGKGS-VESFPHTHDVLTVVYRPDGRQLACS  537 (860)
Q Consensus       460 ~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~  537 (860)
                      .+|++.+++.+..+. |...+.+++|+  ++++++++. ||.|++||+.+++.. .....|...|++++|+|++++|+++
T Consensus       430 ~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  506 (615)
T 1pgu_A          430 LILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAG  506 (615)
T ss_dssp             EEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEeccCCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEc
Confidence            999999999998887 88999999999  889999999 999999999887644 4555799999999999999999999


Q ss_pred             eCCCeEEEEeCCCCceeEEEec-ccccCCCccccccccccccCCCCcEEEEEEec----------CCCEEEEecCCCeEE
Q 038577          538 TLDGQIHFWDPLNGELMYTIEG-RRDISGGRLMTDRRSAANSSSGKCFTTLCYSA----------DGSYILAGGSSKYIC  606 (860)
Q Consensus       538 ~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~----------~g~~l~~~~~dg~v~  606 (860)
                      +.||.|++||+.+++.+..+.+ |..                    .|++++|+|          ++++|++++.||.|+
T Consensus       507 ~~dg~i~iw~~~~~~~~~~~~~~h~~--------------------~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~  566 (615)
T 1pgu_A          507 DVMGKILLYDLQSREVKTSRWAFRTS--------------------KINAISWKPAEKGANEEEIEEDLVATGSLDTNIF  566 (615)
T ss_dssp             ETTSCEEEEETTTTEEEECCSCCCSS--------------------CEEEEEECCCC------CCSCCEEEEEETTSCEE
T ss_pred             CCCCeEEEeeCCCCcceeEeecCCCC--------------------ceeEEEEcCccccccccccCCCEEEEEcCCCcEE
Confidence            9999999999999999888776 543                    599999999          999999999999999


Q ss_pred             EEECCCc-eEEEEEeecccccccceeeeccCCCCCCCCCCccccCCCCCccccccccccCccccCCCCCCCCCCCCccce
Q 038577          607 MYDVADQ-VLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQT  685 (860)
Q Consensus       607 vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  685 (860)
                      +||+.++ +++..+                                                           ..+..+|
T Consensus       567 iw~~~~~~~~~~~~-----------------------------------------------------------~~h~~~v  587 (615)
T 1pgu_A          567 IYSVKRPMKIIKAL-----------------------------------------------------------NAHKDGV  587 (615)
T ss_dssp             EEESSCTTCCEEET-----------------------------------------------------------TSSTTCE
T ss_pred             EEECCCCceechhh-----------------------------------------------------------hcCccce
Confidence            9999886 333211                                                           1223479


Q ss_pred             eEEEECCCCCeEEEeccccE-EEEecCC
Q 038577          686 KCLKIAPTGRNFVAATTEGV-LVYSIDE  712 (860)
Q Consensus       686 ~~~~~spdg~~~~~~~~~g~-~i~~~~~  712 (860)
                      .+++|+|||+ +++++.||. .+|+++.
T Consensus       588 ~~l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          588 NNLLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             EEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             EEEEEcCCCC-eEEecCCceEEEEeeec
Confidence            9999999999 999999995 4998763

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=5.5e-63  Score=557.65  Aligned_cols=521  Identities=16%  Similarity=0.159  Sum_probs=426.0

Q ss_pred             cCCcEEEe-CCCEEEeee-CCeEEEEECCCCc--EEeeccCCccCeeEEEEcCCCCEEEEEcCC----CcEEEEEcccCe
Q 038577           14 RGGNAVLS-QNTKLISPV-GNRVSVTDLIKSK--TVTLPVESSSNICRIAVSPDGTFLLTVDEN----QRCHFINLHCHV   85 (860)
Q Consensus        14 ~~~~~~~s-dg~~l~~~~-~~~i~v~d~~~~~--~~~~~~~h~~~v~~va~spdg~~la~~~~d----~~i~vwd~~~~~   85 (860)
                      ....++|| ||++||+++ ++.|+|||+.+++  ....+.+|.+.|.+++|+|||++||+++.+    +.|++||  +++
T Consensus        61 ~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~  138 (611)
T 1nr0_A           61 QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGT  138 (611)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCC
T ss_pred             ceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCC
Confidence            34469999 999999986 5889999997654  344566899999999999999999998764    3677776  455


Q ss_pred             EEEEee-cCCceeEEEECCCCC-EEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecC
Q 038577           86 VLHRVR-FKYPVNAILFSPNGK-YIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKD  162 (860)
Q Consensus        86 ~~~~~~-~~~~v~~~~fspdg~-~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d  162 (860)
                      .+..+. |...|.+++|+|++. .|+++ .|+.|++||..+++       +...+.+|.+.|.+++|+|||++|++++.|
T Consensus       139 ~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~-------~~~~l~~H~~~V~~v~fspdg~~las~s~D  211 (611)
T 1nr0_A          139 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-------FKSTFGEHTKFVHSVRYNPDGSLFASTGGD  211 (611)
T ss_dssp             BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-------EEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe-------EeeeeccccCceEEEEECCCCCEEEEEECC
Confidence            555555 899999999999986 57777 78999999987664       577899999999999999999999999999


Q ss_pred             CeEEEEeecccccCcccccceEee-------cCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccC
Q 038577          163 LAVRLFYVKEKLKGIHTNKPFLLL-------GHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETME  235 (860)
Q Consensus       163 g~v~vwd~~~~~~~~~~~~~~~~~-------~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~  235 (860)
                      ++|++||+.++      .....+.       +|.+.|.+++|+|+++     +|++++.|++|++||+.++..       
T Consensus       212 ~~i~lwd~~~g------~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-----~l~s~s~D~~v~lWd~~~~~~-------  273 (611)
T 1nr0_A          212 GTIVLYNGVDG------TKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-----KIASASADKTIKIWNVATLKV-------  273 (611)
T ss_dssp             SCEEEEETTTC------CEEEECBCTTSSSCSSSSCEEEEEECTTSS-----EEEEEETTSEEEEEETTTTEE-------
T ss_pred             CcEEEEECCCC------cEeeeeccccccccccCCCEEEEEECCCCC-----EEEEEeCCCeEEEEeCCCCce-------
Confidence            99999999877      3344442       7999999999999999     999999999999999987532       


Q ss_pred             CCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEe
Q 038577          236 DSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFN  315 (860)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s  315 (860)
                                   ...+.     .-.........+.+  +++.+++++.+|.+++|+...++....+..|...|.+++|+
T Consensus       274 -------------~~~~~-----~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s  333 (611)
T 1nr0_A          274 -------------EKTIP-----VGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSS  333 (611)
T ss_dssp             -------------EEEEE-----CCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             -------------eeeec-----CCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe
Confidence                         01110     00112223455555  67889999999999999999998888889999999999999


Q ss_pred             eCCCEEEEEEccCCcEEEEEccCceEEEEe-cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE---EeecCC
Q 038577          316 ELGNWLVFGCAKLGQLLVWEWRSESYILKQ-QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFV---TFTEHT  391 (860)
Q Consensus       316 ~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~  391 (860)
                      |+|+.+++++.+ +.|++||+.++.....+ .+|...|.+++|++++ .+++++.|+.+++|+...+....   ......
T Consensus       334 pdg~~l~s~s~D-~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~  411 (611)
T 1nr0_A          334 ADGKTLFSADAE-GHINSWDISTGISNRVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLS  411 (611)
T ss_dssp             TTSSEEEEEETT-SCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECS
T ss_pred             CCCCEEEEEeCC-CcEEEEECCCCceeeecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccceeeeecC
Confidence            999999988876 99999999998877655 5799999999999876 68899999999999987643221   001233


Q ss_pred             CceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCce--
Q 038577          392 NAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRL--  469 (860)
Q Consensus       392 ~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~--  469 (860)
                      ..+.+++++|++..++++ .++.+++|+.  ++ ...+.  ....+.+++++|+|+++++++.|+ .|++||+.++..  
T Consensus       412 ~~~~~~~~s~dg~~~~~~-~~~~v~~~~~--~~-~~~~~--~~~~v~~va~spdg~~lasgs~D~-~v~lwd~~~~~~~~  484 (611)
T 1nr0_A          412 SQPLGLAVSADGDIAVAA-CYKHIAIYSH--GK-LTEVP--ISYNSSCVALSNDKQFVAVGGQDS-KVHVYKLSGASVSE  484 (611)
T ss_dssp             SCEEEEEECTTSSCEEEE-ESSEEEEEET--TE-EEEEE--CSSCEEEEEECTTSCEEEEEETTS-EEEEEEEETTEEEE
T ss_pred             CCCcEEEEeCCCcEEEEE-eCceEEEEeC--Cc-eeeee--cCCCceEEEEeCCCCEEEEeCCCC-eEEEEEccCCceee
Confidence            456789999999877777 4678999983  33 44443  455789999999999999999999 999999987654  


Q ss_pred             EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccC-CcceeE-Ec-ccCCCeEEEEEeeCCCEEEEEeCCCeEEEE
Q 038577          470 LDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFE-GKGSVE-SF-PHTHDVLTVVYRPDGRQLACSTLDGQIHFW  546 (860)
Q Consensus       470 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~-~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  546 (860)
                      ... .+|...|++++|+|+|++|++++.|++|++||+.+ ++.... .. .|...|.+++|+|||++|++++.|++|++|
T Consensus       485 ~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW  563 (611)
T 1nr0_A          485 VKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW  563 (611)
T ss_dssp             EEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEE
Confidence            233 67999999999999999999999999999999987 443222 23 399999999999999999999999999999


Q ss_pred             eCCCCc-ee-EEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECC
Q 038577          547 DPLNGE-LM-YTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVA  611 (860)
Q Consensus       547 d~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~  611 (860)
                      |+.++. .. ..+.+|.                   ...|.+++|+|+++ |++++.|++|++|+++
T Consensus       564 ~~~~~~~~~~~~~~~h~-------------------~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          564 NMNKPSDHPIIIKGAHA-------------------MSSVNSVIWLNETT-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             ETTCTTSCCEEETTSST-------------------TSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred             ECCCcccccchhhccCc-------------------ccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence            998875 33 4455551                   13599999999998 9999999999999974

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=9.8e-64  Score=615.92  Aligned_cols=573  Identities=19%  Similarity=0.279  Sum_probs=489.9

Q ss_pred             CcEEEe-CCCEEEeee-CCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee-c
Q 038577           16 GNAVLS-QNTKLISPV-GNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-F   92 (860)
Q Consensus        16 ~~~~~s-dg~~l~~~~-~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~-~   92 (860)
                      ..++|| ||++|++++ ++.|++||+.+++....+.+|...|.+++|+|+|++||+++.|+.|++||+.+++.+..+. |
T Consensus       619 ~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~  698 (1249)
T 3sfz_A          619 YHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEH  698 (1249)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCC
Confidence            368999 999999976 5789999999999988888999999999999999999999999999999999999999887 8


Q ss_pred             CCceeEEEECC--CCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEe
Q 038577           93 KYPVNAILFSP--NGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFY  169 (860)
Q Consensus        93 ~~~v~~~~fsp--dg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd  169 (860)
                      ...|.+++|+|  ++.+++++ .|+.|++||+.+++       +...+.+|.+.|++++|+|++++|++++.||.|++||
T Consensus       699 ~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-------~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd  771 (1249)
T 3sfz_A          699 SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE-------CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD  771 (1249)
T ss_dssp             SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-------EEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEE
T ss_pred             CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-------hhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEe
Confidence            99999999999  45678887 78999999999887       4788899999999999999999999999999999999


Q ss_pred             ecccccCcccccceEee-------------cCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCC
Q 038577          170 VKEKLKGIHTNKPFLLL-------------GHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMED  236 (860)
Q Consensus       170 ~~~~~~~~~~~~~~~~~-------------~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~  236 (860)
                      +.++      .....+.             .+...+.+++|+|++.     .+++++ ++.+.+|+..++..        
T Consensus       772 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-----~l~~~~-~~~v~~~d~~~~~~--------  831 (1249)
T 3sfz_A          772 VRSA------NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGD-----KIIVAA-KNKVLLFDIHTSGL--------  831 (1249)
T ss_dssp             GGGT------EEEEEEECCCCC--------CCCCCBCCCCBCTTSS-----EEEEEE-TTEEEEEETTTCCE--------
T ss_pred             CCCC------cccceecccccccccCCccccccceEEEEEECCCCC-----EEEEEc-CCcEEEEEecCCCc--------
Confidence            9877      2222221             2344788899999998     788776 78999999987532        


Q ss_pred             CCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEee
Q 038577          237 SEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNE  316 (860)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~  316 (860)
                                         ......++...+.+++|+|+++.+++++.+|.|++|++.++.....+..|...|.+++|+|
T Consensus       832 -------------------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp  892 (1249)
T 3sfz_A          832 -------------------LAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP  892 (1249)
T ss_dssp             -------------------EEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred             -------------------eeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECC
Confidence                               1122346778999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEccCCcEEEEEccCceE-----------------------------EEE--------ecCcccCeEEEEEcC
Q 038577          317 LGNWLVFGCAKLGQLLVWEWRSESY-----------------------------ILK--------QQGHYFDVNCLAYSP  359 (860)
Q Consensus       317 ~~~~l~~~~~~~g~i~v~d~~~~~~-----------------------------~~~--------~~~~~~~v~~~~~s~  359 (860)
                      +|+.+++++.+ |.+++|++.+...                             ...        ...+...+.+++|+|
T Consensus       893 dg~~l~s~s~d-g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp  971 (1249)
T 3sfz_A          893 DGSSFLTASDD-QTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP  971 (1249)
T ss_dssp             TSSEEEEEETT-SCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECT
T ss_pred             CCCEEEEEeCC-CeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcC
Confidence            99999988776 9999999753200                             000        011345689999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEE
Q 038577          360 DSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVS  439 (860)
Q Consensus       360 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  439 (860)
                      +++++++|+.+|.|++|++.++.....+.+|...|.+++|+|+++++++++.||.|++||+.+++....  ..+...+.+
T Consensus       972 ~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~v~~ 1049 (1249)
T 3sfz_A          972 HLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFL--QAHQETVKD 1049 (1249)
T ss_dssp             TSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECC--BCCSSCEEE
T ss_pred             CCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEE--ecCCCcEEE
Confidence            999999999999999999999999999999999999999999999999999999999999998876643  355668999


Q ss_pred             EEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccC
Q 038577          440 LASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHT  519 (860)
Q Consensus       440 ~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  519 (860)
                      ++++|++. +++++.++ .+++||+.+++....+.+|.+.|.+++|+|+++++++++.||+|++||+.+++....+..|.
T Consensus      1050 ~~~~~~~~-l~~~~~dg-~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~ 1127 (1249)
T 3sfz_A         1050 FRLLQDSR-LLSWSFDG-TVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHN 1127 (1249)
T ss_dssp             EEECSSSE-EEEEESSS-EEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCS
T ss_pred             EEEcCCCc-EEEEECCC-cEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCC
Confidence            99999765 56777777 99999999999999999999999999999999999999999999999999998888888899


Q ss_pred             CCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEe
Q 038577          520 HDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAG  599 (860)
Q Consensus       520 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~  599 (860)
                      ..|++++|+|+|++|++++.||.|++||+.+++.+..+.....           ......+...|++++|+|||++|+++
T Consensus      1128 ~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~-----------~~~~~~~~~~v~~l~fs~dg~~l~s~ 1196 (1249)
T 3sfz_A         1128 GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISV-----------EEGTATHGGWVTDVCFSPDSKTLVSA 1196 (1249)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC------------------CCSCCCEEEECTTSSCEEEE
T ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccc-----------cccccccCceEEEEEECCCCCEEEEC
Confidence            9999999999999999999999999999999987766521110           00112234569999999999999998


Q ss_pred             cCCCeEEEEECCCceEEEEEeecccccccceeeeccCCCCCCCCCCccccCCCCCccccccccccCccccCCCCCCCCCC
Q 038577          600 GSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRG  679 (860)
Q Consensus       600 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  679 (860)
                      +  |.|++||+.+++.+..+.                                                           
T Consensus      1197 ~--g~v~vwd~~~g~~~~~~~----------------------------------------------------------- 1215 (1249)
T 3sfz_A         1197 G--GYLKWWNVATGDSSQTFY----------------------------------------------------------- 1215 (1249)
T ss_dssp             S--SSEEEBCSSSCBCCCCCC-----------------------------------------------------------
T ss_pred             C--CeEEEEECCCCceeeeee-----------------------------------------------------------
Confidence            6  899999999886543111                                                           


Q ss_pred             CCccceeEEEECCCCCeEEEeccccEE-EEecC
Q 038577          680 RPTIQTKCLKIAPTGRNFVAATTEGVL-VYSID  711 (860)
Q Consensus       680 ~~~~~~~~~~~spdg~~~~~~~~~g~~-i~~~~  711 (860)
                      .+..++.+++|+|||+.+++++.+|.+ +|++.
T Consensus      1216 ~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A         1216 TNGTNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp             CSSCCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred             ccCCcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence            112367889999999999999999955 89753

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=4.2e-60  Score=583.55  Aligned_cols=558  Identities=19%  Similarity=0.286  Sum_probs=470.8

Q ss_pred             eeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee-cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCC
Q 038577           46 TLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPG  123 (860)
Q Consensus        46 ~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~  123 (860)
                      ..+.+|.+.|++++|||||++||+++.||+|++||+.+++.+..+. |...|.+++|+|||++||++ .|+.|++||+.+
T Consensus       609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~  688 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT  688 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence            4456899999999999999999999999999999999999999888 89999999999999999999 789999999998


Q ss_pred             CCcccceeEEEEEeeccCCCeEEEEEcC--CCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCC
Q 038577          124 FKKEVFAFELIRTLADCNDKVTALNWSP--DSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDK  201 (860)
Q Consensus       124 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~--d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~  201 (860)
                      ++       ++..+.+|...|.+++|+|  ++.++++++.|+.|++||+.++      .....+.+|.+.|.+++|+|++
T Consensus       689 ~~-------~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~------~~~~~~~~h~~~v~~~~~sp~~  755 (1249)
T 3sfz_A          689 GK-------LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK------ECRNTMFGHTNSVNHCRFSPDD  755 (1249)
T ss_dssp             CC-------EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS------SEEEEECCCSSCEEEEEECSST
T ss_pred             Cc-------eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc------chhheecCCCCCEEEEEEecCC
Confidence            87       5788899999999999999  4568999999999999999988      6678889999999999999999


Q ss_pred             CCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEE
Q 038577          202 KTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVV  281 (860)
Q Consensus       202 ~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  281 (860)
                      .     ++++++.||.|++||+.++..........               ...............+.+++|+|+++.+++
T Consensus       756 ~-----~l~s~s~dg~v~vwd~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~  815 (1249)
T 3sfz_A          756 E-----LLASCSADGTLRLWDVRSANERKSINVKR---------------FFLSSEDPPEDVEVIVKCCSWSADGDKIIV  815 (1249)
T ss_dssp             T-----EEEEEESSSEEEEEEGGGTEEEEEEECCC---------------CC--------CCCCCBCCCCBCTTSSEEEE
T ss_pred             C-----EEEEEECCCeEEEEeCCCCcccceecccc---------------cccccCCccccccceEEEEEECCCCCEEEE
Confidence            9     99999999999999998753210000000               000000111223447889999999999998


Q ss_pred             EEcCCeEEEEECCCceeEEEEe-ecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCC
Q 038577          282 GFSNGVFGLYQMPDFVCIHLLS-ISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPD  360 (860)
Q Consensus       282 ~~~~g~i~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~  360 (860)
                      ++ ++.+.+|++.++.....+. .+...+.+++|+|++..+++++.+ |.+++||+.++.....+.+|...|.+++|+|+
T Consensus       816 ~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-g~v~vwd~~~~~~~~~~~~h~~~v~~v~~spd  893 (1249)
T 3sfz_A          816 AA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ-YCVELWNIDSRLKVADCRGHLSWVHGVMFSPD  893 (1249)
T ss_dssp             EE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSS-SCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             Ec-CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCC-CeEEEEEcCCCceeeecCCCccceEEEEECCC
Confidence            87 7899999999998887776 678899999999999999988776 99999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCee-----------------------------EEE--------eecCCCceEEEEEeeCC
Q 038577          361 SQLLATGADDNKVKVWTVSSGFC-----------------------------FVT--------FTEHTNAVTALHFMANN  403 (860)
Q Consensus       361 ~~~l~~~~~dg~i~iwd~~~~~~-----------------------------~~~--------~~~~~~~v~~i~~~~~~  403 (860)
                      |+.+++++.||.|++|++.+...                             ...        ...+...+.+++|+|++
T Consensus       894 g~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g  973 (1249)
T 3sfz_A          894 GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHL  973 (1249)
T ss_dssp             SSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTS
T ss_pred             CCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCC
Confidence            99999999999999999653100                             000        11245679999999999


Q ss_pred             CEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEE
Q 038577          404 HSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGL  483 (860)
Q Consensus       404 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l  483 (860)
                      +++++++.||.|++|++.+++....+. .+...+.+++|+|+|+++++++.|+ .|++||+.+++... +.+|...|.++
T Consensus       974 ~~l~~g~~~g~i~i~d~~~~~~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~dg-~i~vwd~~~~~~~~-~~~~~~~v~~~ 1050 (1249)
T 3sfz_A          974 EYVAFGDEDGAIKIIELPNNRVFSSGV-GHKKAVRHIQFTADGKTLISSSEDS-VIQVWNWQTGDYVF-LQAHQETVKDF 1050 (1249)
T ss_dssp             SEEEEEETTSCCEEEETTTTSCEEECC-CCSSCCCCEEECSSSSCEEEECSSS-BEEEEETTTTEEEC-CBCCSSCEEEE
T ss_pred             CEEEEEcCCCCEEEEEcCCCceeeecc-cCCCceEEEEECCCCCEEEEEcCCC-EEEEEECCCCceEE-EecCCCcEEEE
Confidence            999999999999999999988776655 3455789999999999999999998 99999999988764 55799999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEeccccc
Q 038577          484 VFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI  563 (860)
Q Consensus       484 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  563 (860)
                      +|+|++ .+++++.||.|++||+.+++....+..|...|++++|+|+++++++++.||.|++||+.+++++..+.+|.. 
T Consensus      1051 ~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~- 1128 (1249)
T 3sfz_A         1051 RLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNG- 1128 (1249)
T ss_dssp             EECSSS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSS-
T ss_pred             EEcCCC-cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCC-
Confidence            999966 578899999999999999998888889999999999999999999999999999999999998888887765 


Q ss_pred             CCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeecccccccceeeeccCCCCCCCC
Q 038577          564 SGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAG  643 (860)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  643 (860)
                                         .|++++|+|||++|++++.||.|++||+.+++.+..+....                    
T Consensus      1129 -------------------~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~-------------------- 1169 (1249)
T 3sfz_A         1129 -------------------CVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPIS-------------------- 1169 (1249)
T ss_dssp             -------------------CEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC--------------------
T ss_pred             -------------------cEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecccc--------------------
Confidence                               59999999999999999999999999999987653221000                    


Q ss_pred             CCccccCCCCCccccccccccCccccCCCCCCCCCCCCccceeEEEECCCCCeEEEeccccEEEEecCCc
Q 038577          644 PMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYSIDES  713 (860)
Q Consensus       644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~i~~~~~~  713 (860)
                                             .       ......+..++.+++|+|||+.+++++ ..+.+|++...
T Consensus      1170 -----------------------~-------~~~~~~~~~~v~~l~fs~dg~~l~s~~-g~v~vwd~~~g 1208 (1249)
T 3sfz_A         1170 -----------------------V-------EEGTATHGGWVTDVCFSPDSKTLVSAG-GYLKWWNVATG 1208 (1249)
T ss_dssp             -------------------------------------CCSCCCEEEECTTSSCEEEES-SSEEEBCSSSC
T ss_pred             -----------------------c-------cccccccCceEEEEEECCCCCEEEECC-CeEEEEECCCC
Confidence                                   0       000122345789999999999999886 34669998653

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-57  Score=531.57  Aligned_cols=565  Identities=12%  Similarity=0.114  Sum_probs=428.0

Q ss_pred             cccccccCCcEEEe-CCCEEEeee-CCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCe
Q 038577            8 LLGAPYRGGNAVLS-QNTKLISPV-GNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHV   85 (860)
Q Consensus         8 ~~g~~~~~~~~~~s-dg~~l~~~~-~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~   85 (860)
                      ..|.......++|+ ||++||+++ ++.|++||..+.+..... .|...|.+++|+| |++||+++.|++|++||+.+++
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~   90 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK   90 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc
Confidence            34555556679999 999999986 589999999888776655 6889999999999 8899999999999999999999


Q ss_pred             EEEEeecCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEE------EEeeccCCCeEEEEEcCC-CCeEE
Q 038577           86 VLHRVRFKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELI------RTLADCNDKVTALNWSPD-SNYLL  157 (860)
Q Consensus        86 ~~~~~~~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~------~~~~~h~~~v~~l~~s~d-~~~l~  157 (860)
                      .+..+.+...|++++|+|++++|++| .++.|++||+.+++..  ++...      ..+.+|.+.|.+++|+|+ +..++
T Consensus        91 ~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~--~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~  168 (902)
T 2oaj_A           91 VLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS--SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL  168 (902)
T ss_dssp             EEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE--EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc--cceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence            99999988999999999999999999 7899999999987521  11000      234679999999999996 47899


Q ss_pred             EeecCCeEEEEeecccccCcccccceEeecC------------------CCcEEEEEEccCCCCCccceEEEEcCCccEE
Q 038577          158 VGSKDLAVRLFYVKEKLKGIHTNKPFLLLGH------------------RDSVVGCFFSVDKKTDKVNRIYTIARDCYMF  219 (860)
Q Consensus       158 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h------------------~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~  219 (860)
                      +|+.||.| +||+.++      .....+.+|                  ...|.+++|+|++.     +|++++.||+|+
T Consensus       169 ~g~~dg~v-lWd~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-----~lasgs~Dg~i~  236 (902)
T 2oaj_A          169 ISYEYVTL-TYSLVEN------EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-----HIITIHEDNSLV  236 (902)
T ss_dssp             EECSSCEE-EEETTTT------EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-----EEEEEETTCCEE
T ss_pred             EEeCCCcE-EEECCCC------ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC-----EEEEEECCCeEE
Confidence            99999999 9999887      344445444                  67899999999999     999999999999


Q ss_pred             EeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEec----CCC-CEEEEEEcC-----CeEE
Q 038577          220 SWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYH----RGL-DMVVVGFSN-----GVFG  289 (860)
Q Consensus       220 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~-~~l~~~~~~-----g~i~  289 (860)
                      +||+.++.................. .         .......+...|.+++|+    |++ ..+++|+.+     ..+.
T Consensus       237 lWd~~~g~~~~~r~l~~~~~~~~~~-~---------~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~  306 (902)
T 2oaj_A          237 FWDANSGHMIMARTVFETEINVPQP-D---------YIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLT  306 (902)
T ss_dssp             EEETTTCCEEEEECSSCSCTTSCCT-T---------CCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEE
T ss_pred             EEECCCCcEEEEEeecccccCCCCC-c---------CCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEE
Confidence            9999875431100000000000000 0         000000234579999996    443 456677665     3788


Q ss_pred             EEECC------------------CceeEEEEe-ecCceeEEEEEee----------CCCEEEEEEccCCcEEEEEccCce
Q 038577          290 LYQMP------------------DFVCIHLLS-ISREKITTAVFNE----------LGNWLVFGCAKLGQLLVWEWRSES  340 (860)
Q Consensus       290 ~~~~~------------------~~~~~~~~~-~~~~~i~~~~~s~----------~~~~l~~~~~~~g~i~v~d~~~~~  340 (860)
                      +|++.                  +.+....+. .+...+..+.+.+          +...+++.+. +|.|++|++.++.
T Consensus       307 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~-dg~l~~~~~~~g~  385 (902)
T 2oaj_A          307 MIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILG-NGEIETMLYPSGI  385 (902)
T ss_dssp             EEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEET-TSCEEEEETTTCC
T ss_pred             EEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcC-CCcEEEEECCCCC
Confidence            88842                  122334443 2456788888765          2345666665 5999999987764


Q ss_pred             EEEE-----------------------------------------ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 038577          341 YILK-----------------------------------------QQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVS  379 (860)
Q Consensus       341 ~~~~-----------------------------------------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  379 (860)
                      ....                                         +.+|...+.+++|+|++++|++|+.|++|++||+.
T Consensus       386 ~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~  465 (902)
T 2oaj_A          386 FTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDAS  465 (902)
T ss_dssp             EECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESS
T ss_pred             cccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECC
Confidence            3321                                         12333444555668899999999999999999998


Q ss_pred             CCeeE----EE--ee-----cCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccc------------------------
Q 038577          380 SGFCF----VT--FT-----EHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYR------------------------  424 (860)
Q Consensus       380 ~~~~~----~~--~~-----~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~------------------------  424 (860)
                      ++...    ..  +.     +|...|.+++|+|++++|++|+.||+|++|++.+++                        
T Consensus       466 ~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (902)
T 2oaj_A          466 HGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNN  545 (902)
T ss_dssp             CCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGG
T ss_pred             CccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccC
Confidence            76421    11  11     788999999999999999999999999999998763                        


Q ss_pred             ---------------------eeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEE-----Eec-Ccc
Q 038577          425 ---------------------NFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLD-----ILS-GHE  477 (860)
Q Consensus       425 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~-----~~~-~h~  477 (860)
                                           +...+. .+...|.+++|+|+| +||+|+.|+ .|++||++++..+.     .+. +|.
T Consensus       546 ~~~~~~~~~~~~~~~~~~g~~~~~~l~-~h~~~V~svafSpdG-~lAsgs~D~-tv~lwd~~~~~~~~~~~~~~~~~gh~  622 (902)
T 2oaj_A          546 TNGVLVDVRDRAPTGVRQGFMPSTAVH-ANKGKTSAINNSNIG-FVGIAYAAG-SLMLIDRRGPAIIYMENIREISGAQS  622 (902)
T ss_dssp             SSCSEEECGGGCCTTCSEEEEEEEEEC-CCSCSEEEEEECBTS-EEEEEETTS-EEEEEETTTTEEEEEEEGGGTCSSCC
T ss_pred             CccccccccccCCCCCCCccceeEEEE-cCCCcEEEEEecCCc-EEEEEeCCC-cEEEEECCCCeEEEEeehhHhccccc
Confidence                                 123333 356789999999999 999999998 99999998877654     233 899


Q ss_pred             cCeEEEEEc-----CCC---CEEEEEeCCCcEEEEEc---cCCcceeEEccc-----CCCeEEEE-Ee------------
Q 038577          478 GPVHGLVFS-----PTN---ATLASSSWDKTVRLWNV---FEGKGSVESFPH-----THDVLTVV-YR------------  528 (860)
Q Consensus       478 ~~v~~l~~s-----~~~---~~l~s~~~dg~i~iwd~---~~~~~~~~~~~~-----~~~v~~~~-~s------------  528 (860)
                      +.|++++|+     |||   ++|++++.|++|++||+   .+++....+.+|     .++|..++ |+            
T Consensus       623 ~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~  702 (902)
T 2oaj_A          623 ACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIP  702 (902)
T ss_dssp             CCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHH
T ss_pred             cceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHH
Confidence            999999999     885   89999999999999999   677766665554     47777776 66            


Q ss_pred             ----------eCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEE---E------E
Q 038577          529 ----------PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTL---C------Y  589 (860)
Q Consensus       529 ----------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l---~------~  589 (860)
                                +++..|+++  +..|++|++.++++.++...+.-                    .+.++   .      |
T Consensus       703 ~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~~~~--------------------~~~~v~~~~~~~~~~~  760 (902)
T 2oaj_A          703 KMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGFKYPL--------------------AATGLSYISTVEKNND  760 (902)
T ss_dssp             HHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEECSSCE--------------------EEEEEEEEEEECSSSC
T ss_pred             HHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEcccce--------------------eeeEEEEEEecccccc
Confidence                      455444444  77899999999998877755432                    24554   5      7


Q ss_pred             ecCCCEEEEecCCCeEEEEECCCceEEEEEeeccc
Q 038577          590 SADGSYILAGGSSKYICMYDVADQVLLRRFQITHN  624 (860)
Q Consensus       590 s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~  624 (860)
                      +++|..|++++.||.|++|++++.+++..+..+..
T Consensus       761 ~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~  795 (902)
T 2oaj_A          761 RKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPFP  795 (902)
T ss_dssp             EEEEEEEEEEETTSEEEEEETTTCCEEEEEECSSC
T ss_pred             ccCceEEEEEeCCCcEEEEECcchHHHhhccCCcc
Confidence            89999999999999999999999999998887653

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-57  Score=524.91  Aligned_cols=524  Identities=11%  Similarity=0.102  Sum_probs=397.0

Q ss_pred             cCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcc
Q 038577           49 VESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKE  127 (860)
Q Consensus        49 ~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~  127 (860)
                      .+|...|++++|+|+|++||+|+.||.|+||+..+++.+..+.|..+|.+++|+| |++|+++ .|+.|++||+.+++  
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~--   90 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK--   90 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS--
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc--
Confidence            4899999999999999999999999999999999988888877889999999999 8888887 79999999999876  


Q ss_pred             cceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccc-------eEeecCCCcEEEEEEccC
Q 038577          128 VFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKP-------FLLLGHRDSVVGCFFSVD  200 (860)
Q Consensus       128 ~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-------~~~~~h~~~i~~~~~~~~  200 (860)
                           ++..+. |.+.|++++|+|++++|++|+.||.|++||+.++ ... ....       ..+.+|.+.|.+++|+|+
T Consensus        91 -----~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~-~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~  162 (902)
T 2oaj_A           91 -----VLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRD-QLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPR  162 (902)
T ss_dssp             -----EEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTT-EEE-EEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred             -----EEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCC-ccc-cceeccccccccccccCCCCeEEEEEccC
Confidence                 355554 7789999999999999999999999999999876 110 0000       234789999999999996


Q ss_pred             C-CCCccceEEEEcCCccEEEeeecCCCCCCccccCCC-CCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCE
Q 038577          201 K-KTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDS-EPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDM  278 (860)
Q Consensus       201 ~-~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  278 (860)
                      + .     .+++++.||.+ +||+.++........... ..+...   .        .......|...|.+++|+|+|++
T Consensus       163 ~~~-----~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~---~--------~~~~~~~h~~~V~~v~fspdg~~  225 (902)
T 2oaj_A          163 DIG-----TVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGD---F--------SEKTNEKRTPKVIQSLYHPNSLH  225 (902)
T ss_dssp             EEE-----EEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCST---T--------CCCTTSCBCCCEEEEEECTTSSE
T ss_pred             CCC-----EEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcc---c--------ccccccccCCCeEEEEEcCCCCE
Confidence            4 5     89999999999 999987532110000000 000000   0        00112234578999999999999


Q ss_pred             EEEEEcCCeEEEEECCCceeEEEEe-----e-------------cCceeEEEEEee----CCCEEEEEE-ccC----CcE
Q 038577          279 VVVGFSNGVFGLYQMPDFVCIHLLS-----I-------------SREKITTAVFNE----LGNWLVFGC-AKL----GQL  331 (860)
Q Consensus       279 l~~~~~~g~i~~~~~~~~~~~~~~~-----~-------------~~~~i~~~~~s~----~~~~l~~~~-~~~----g~i  331 (860)
                      |++++.||.|++||+.+++.+....     .             +...|.+++|++    ++..+++++ .++    ..+
T Consensus       226 lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v  305 (902)
T 2oaj_A          226 IITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSL  305 (902)
T ss_dssp             EEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCE
T ss_pred             EEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceE
Confidence            9999999999999999888765411     1             234799999975    333554444 332    378


Q ss_pred             EEEEcc------------------CceEEEEec-CcccCeEEEEEcC----------CCCEEEEEeCCCcEEEEECCCCe
Q 038577          332 LVWEWR------------------SESYILKQQ-GHYFDVNCLAYSP----------DSQLLATGADDNKVKVWTVSSGF  382 (860)
Q Consensus       332 ~v~d~~------------------~~~~~~~~~-~~~~~v~~~~~s~----------~~~~l~~~~~dg~i~iwd~~~~~  382 (860)
                      .+|+..                  +.+....+. .+...|..+.+.+          +...+++++.||.|++|++.++.
T Consensus       306 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~  385 (902)
T 2oaj_A          306 TMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGI  385 (902)
T ss_dssp             EEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCC
T ss_pred             EEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCC
Confidence            888842                  222233333 4667788888866          34478889999999999997774


Q ss_pred             eEEE-------e----------------------------------ecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcc
Q 038577          383 CFVT-------F----------------------------------TEHTNAVTALHFMANNHSLLSASLDGTVRAWDLF  421 (860)
Q Consensus       383 ~~~~-------~----------------------------------~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~  421 (860)
                      ....       +                                  .+|...+.+++|+|+++.|++|+.|++|++||+.
T Consensus       386 ~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~  465 (902)
T 2oaj_A          386 FTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDAS  465 (902)
T ss_dssp             EECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESS
T ss_pred             cccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECC
Confidence            3322       1                                  2233344445557889999999999999999998


Q ss_pred             cccee--eEee--------CCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCc-----------------------
Q 038577          422 RYRNF--RTFT--------TPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGR-----------------------  468 (860)
Q Consensus       422 ~~~~~--~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~-----------------------  468 (860)
                      ++...  ..+.        ..+...+.+++|+|+|++||+|+.|+ +|++||+.+++                       
T Consensus       466 ~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~Dg-tV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (902)
T 2oaj_A          466 HGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETG-DVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLN  544 (902)
T ss_dssp             CCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTS-CEEEEEEEECCC---------------CCSCCGG
T ss_pred             CccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCc-EEEEEEecCccccCccccCCCcccceeeeecccc
Confidence            77421  1111        14556899999999999999999999 99999998763                       


Q ss_pred             ----------------------eEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCccee-----EEc-ccCC
Q 038577          469 ----------------------LLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSV-----ESF-PHTH  520 (860)
Q Consensus       469 ----------------------~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~-~~~~  520 (860)
                                            ++..+.+|.++|++++||||| +||+|+.|++|++||+.+...+.     .+. +|..
T Consensus       545 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~  623 (902)
T 2oaj_A          545 NTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSA  623 (902)
T ss_dssp             GSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCC
T ss_pred             CCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhcccccc
Confidence                                  367788999999999999999 99999999999999998775432     122 7888


Q ss_pred             CeEEEEEe-----eCC---CEEEEEeCCCeEEEEeC---CCCceeEEEecccccCCCccccccccccccCCCCcEEEEE-
Q 038577          521 DVLTVVYR-----PDG---RQLACSTLDGQIHFWDP---LNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLC-  588 (860)
Q Consensus       521 ~v~~~~~s-----~~~---~~l~~~~~dg~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~-  588 (860)
                      .|++++|+     |||   ++|++|+.||+|++||+   .+|+....+.+|....               +..+|.+++ 
T Consensus       624 ~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~---------------~~~~v~~i~~  688 (902)
T 2oaj_A          624 CVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVT---------------SKGPIHKIDA  688 (902)
T ss_dssp             CEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECC---------------SSCCCCEEEE
T ss_pred             ceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecC---------------CCCceEEEEe
Confidence            99999999     885   89999999999999999   8899888888875320               011233333 


Q ss_pred             Ee----------------------cCCCEEEEecCCCeEEEEECCCceEEEEE
Q 038577          589 YS----------------------ADGSYILAGGSSKYICMYDVADQVLLRRF  619 (860)
Q Consensus       589 ~s----------------------~~g~~l~~~~~dg~v~vwd~~~~~~~~~~  619 (860)
                      |+                      ++|..|+++  +..|++|++.+++++++.
T Consensus       689 ~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~  739 (902)
T 2oaj_A          689 FSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKG  739 (902)
T ss_dssp             EETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEE
T ss_pred             EecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeE
Confidence            43                      566555555  678999999999887644

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.1e-56  Score=511.73  Aligned_cols=507  Identities=14%  Similarity=0.167  Sum_probs=435.6

Q ss_pred             CCcEEEe---CCCEEEeee-CCeEEEEECCCC--------cEEeeccCCccCeeEEEEcCCCCEEEEEcCC----CcEEE
Q 038577           15 GGNAVLS---QNTKLISPV-GNRVSVTDLIKS--------KTVTLPVESSSNICRIAVSPDGTFLLTVDEN----QRCHF   78 (860)
Q Consensus        15 ~~~~~~s---dg~~l~~~~-~~~i~v~d~~~~--------~~~~~~~~h~~~v~~va~spdg~~la~~~~d----~~i~v   78 (860)
                      ...++|+   ||++|++++ ++.|++||+.++        +....+.+|...|.+++|+|+|++|++++.+    +.|.+
T Consensus        67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~  146 (615)
T 1pgu_A           67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFIS  146 (615)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEE
T ss_pred             EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEE
Confidence            4457787   688999876 578999999865        5566666899999999999999999999887    67888


Q ss_pred             EEcccCeEEEEee-cCCceeEEEECCCCC-EEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCC---CeEEEEEcCC
Q 038577           79 INLHCHVVLHRVR-FKYPVNAILFSPNGK-YIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCND---KVTALNWSPD  152 (860)
Q Consensus        79 wd~~~~~~~~~~~-~~~~v~~~~fspdg~-~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~s~d  152 (860)
                      ||  +++.+..+. |...|.+++|+|+++ +++++ .++.|++||..+++       +...+.+|..   .|.+++|+|+
T Consensus       147 ~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~  217 (615)
T 1pgu_A          147 WD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK-------FSASDRTHHKQGSFVRDVEFSPD  217 (615)
T ss_dssp             TT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE-------EEEEECSSSCTTCCEEEEEECST
T ss_pred             EE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc-------eeeeecccCCCCceEEEEEECCC
Confidence            87  667777776 899999999999997 67777 78999999998776       5788899999   9999999999


Q ss_pred             -CCeEEEeecCCeEEEEeecccccCcccccceEe-e---cCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCC
Q 038577          153 -SNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLL-L---GHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGND  227 (860)
Q Consensus       153 -~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~-~---~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~  227 (860)
                       +++|++++.||.|++||+.++      .....+ .   +|...|.+++|+ ++.     ++++++.|+.+++||+.++.
T Consensus       218 ~~~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~~~~~~~~v~~~~~~-~~~-----~l~~~~~d~~i~~wd~~~~~  285 (615)
T 1pgu_A          218 SGEFVITVGSDRKISCFDGKSG------EFLKYIEDDQEPVQGGIFALSWL-DSQ-----KFATVGADATIRVWDVTTSK  285 (615)
T ss_dssp             TCCEEEEEETTCCEEEEETTTC------CEEEECCBTTBCCCSCEEEEEES-SSS-----EEEEEETTSEEEEEETTTTE
T ss_pred             CCCEEEEEeCCCeEEEEECCCC------CEeEEecccccccCCceEEEEEc-CCC-----EEEEEcCCCcEEEEECCCCc
Confidence             999999999999999999887      456666 5   899999999999 888     99999999999999998643


Q ss_pred             CCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCc
Q 038577          228 GKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISRE  307 (860)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~  307 (860)
                      .                    ...+    ..........+.++.+. +++.+++++.+|.|++|++.+++.+..+..|..
T Consensus       286 ~--------------------~~~~----~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~  340 (615)
T 1pgu_A          286 C--------------------VQKW----TLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNK  340 (615)
T ss_dssp             E--------------------EEEE----ECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSS
T ss_pred             E--------------------EEEE----cCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCC
Confidence            2                    0011    00001223567788875 899999999999999999999999999999999


Q ss_pred             eeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 038577          308 KITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTF  387 (860)
Q Consensus       308 ~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  387 (860)
                      .|.+++| |+   +++++. +|.|++|++.   .+.  ..|...|.+++| +++..+++++.|+.+++|++.++...   
T Consensus       341 ~v~~~~~-~~---l~~~~~-dg~i~~w~~~---~~~--~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~---  406 (615)
T 1pgu_A          341 GITALTV-NP---LISGSY-DGRIMEWSSS---SMH--QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFG---  406 (615)
T ss_dssp             CEEEEET-TT---TEEEET-TSCEEETTTT---EEE--CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECS---
T ss_pred             CEEEEEe-cC---cEEECC-CCeEEEEEch---hhc--CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCccc---
Confidence            9999999 87   666555 4999999998   232  789999999999 66789999999999999998654332   


Q ss_pred             ecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEec-CCCeEEEEECCC
Q 038577          388 TEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTL-DSFEIFVWSMKT  466 (860)
Q Consensus       388 ~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~i~v~d~~~  466 (860)
                          ..+.+++++|++..++++ .++.+.+|++.+++....+.  ....+.+++++  ++++++++. ++ .|++||+.+
T Consensus       407 ----~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~l~~~~~~d~-~i~~~~~~~  476 (615)
T 1pgu_A          407 ----SQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVR--LNSPGSAVSLS--QNYVAVGLEEGN-TIQVFKLSD  476 (615)
T ss_dssp             ----SCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEE--CSSCEEEEEEC--SSEEEEEETTTS-CEEEEETTE
T ss_pred             ----CCceEEEEcCCCCEEEEe-CCCceEEEeccCCceeeecc--cCCCceEEEEc--CCEEEEeecCCC-eEEEEECCC
Confidence                268899999999777776 88899999999988888876  44578999999  899999998 87 999999998


Q ss_pred             CceE-EEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcc-cCCCeEEEEEee----------CCCEE
Q 038577          467 GRLL-DILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFP-HTHDVLTVVYRP----------DGRQL  534 (860)
Q Consensus       467 ~~~~-~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~----------~~~~l  534 (860)
                      ++.. ..+.+|...|++++|+|++++|++++.||.|++||+.+++....+.. |...|++++|+|          ++++|
T Consensus       477 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l  556 (615)
T 1pgu_A          477 LEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLV  556 (615)
T ss_dssp             EEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEE
T ss_pred             ccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEE
Confidence            8776 67788999999999999999999999999999999999987777766 999999999999          99999


Q ss_pred             EEEeCCCeEEEEeCCCC-ceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 038577          535 ACSTLDGQIHFWDPLNG-ELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVAD  612 (860)
Q Consensus       535 ~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~  612 (860)
                      ++++.||.|++||+.++ +++..+.+|..                    .|++++|+|+++ |++++.||.|++|++..
T Consensus       557 ~~~~~dg~i~iw~~~~~~~~~~~~~~h~~--------------------~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          557 ATGSLDTNIFIYSVKRPMKIIKALNAHKD--------------------GVNNLLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             EEEETTSCEEEEESSCTTCCEEETTSSTT--------------------CEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             EEEcCCCcEEEEECCCCceechhhhcCcc--------------------ceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence            99999999999999998 77877777764                    599999999999 99999999999999875

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2e-48  Score=458.65  Aligned_cols=438  Identities=15%  Similarity=0.161  Sum_probs=372.6

Q ss_pred             EeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee-cCCceeEEEECCCCCEEEEE-eCCeEEEEeCC
Q 038577           45 VTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSP  122 (860)
Q Consensus        45 ~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~  122 (860)
                      ...+.+|.+.|++++|||+|++||+++.+|.|+|||+.+++.+..+. |..+|++++|+|++++||++ .++.|++||+.
T Consensus         6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~   85 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN   85 (814)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred             ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence            44556899999999999999999999999999999999999999888 89999999999999999999 78999999999


Q ss_pred             CCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEcc-CC
Q 038577          123 GFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSV-DK  201 (860)
Q Consensus       123 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~  201 (860)
                      +++       ....+.+|.+.|++++|+|++++|++++.||.|++||+.++  .   .....+.+|...|.+++|+| ++
T Consensus        86 ~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~--~---~~~~~~~~~~~~v~~~~~~p~~~  153 (814)
T 3mkq_A           86 TGE-------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN--W---ALEQTFEGHEHFVMCVAFNPKDP  153 (814)
T ss_dssp             TCC-------EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT--S---EEEEEEECCSSCEEEEEEETTEE
T ss_pred             CCc-------EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC--c---eEEEEEcCCCCcEEEEEEEcCCC
Confidence            887       47788999999999999999999999999999999999875  1   34567889999999999999 77


Q ss_pred             CCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecC--CCCEE
Q 038577          202 KTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHR--GLDMV  279 (860)
Q Consensus       202 ~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l  279 (860)
                      .     .+++++.||.|++||+.++..                      ..     .....+...+.+++|+|  ++.++
T Consensus       154 ~-----~l~~~~~dg~v~vwd~~~~~~----------------------~~-----~~~~~~~~~v~~~~~~~~~~~~~l  201 (814)
T 3mkq_A          154 S-----TFASGCLDRTVKVWSLGQSTP----------------------NF-----TLTTGQERGVNYVDYYPLPDKPYM  201 (814)
T ss_dssp             E-----EEEEEETTSEEEEEETTCSSC----------------------SE-----EEECCCTTCCCEEEECCSTTCCEE
T ss_pred             C-----EEEEEeCCCeEEEEECCCCcc----------------------ee-----EEecCCCCCEEEEEEEECCCCCEE
Confidence            7     999999999999999876432                      11     11123447799999999  99999


Q ss_pred             EEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcC
Q 038577          280 VVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSP  359 (860)
Q Consensus       280 ~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~  359 (860)
                      ++++.+|.|++||+.+++.+..+..+...+.+++|+|+++.+++++.+ |.|++||+.+++....+..|...+.+++|+|
T Consensus       202 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~  280 (814)
T 3mkq_A          202 ITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED-GTLKIWNSSTYKVEKTLNVGLERSWCIATHP  280 (814)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETT-SCEEEEETTTCSEEEEECCSSSSEEEEEECT
T ss_pred             EEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC-CeEEEEECCCCcEEEEeecCCCcEEEEEEcc
Confidence            999999999999999999999999999999999999999999888776 9999999999999999999999999999999


Q ss_pred             CCC--EEEEEeCCCcEEEEECCCCeeEE-------------------------------------------EeecCCCce
Q 038577          360 DSQ--LLATGADDNKVKVWTVSSGFCFV-------------------------------------------TFTEHTNAV  394 (860)
Q Consensus       360 ~~~--~l~~~~~dg~i~iwd~~~~~~~~-------------------------------------------~~~~~~~~v  394 (860)
                      ++.  +++++ .++.+.+|++..+....                                           .+..+...+
T Consensus       281 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (814)
T 3mkq_A          281 TGRKNYIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFP  359 (814)
T ss_dssp             TCGGGEEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCC
T ss_pred             CCCceEEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCC
Confidence            987  45554 46778888875432211                                           112244568


Q ss_pred             EEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec
Q 038577          395 TALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS  474 (860)
Q Consensus       395 ~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~  474 (860)
                      .+++|+|+|+++++++ |+.+.+|++.......      ...+.+++|+|+++++++++.++ .+++|+.        +.
T Consensus       360 ~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~------~~~i~~~~~spdg~~la~~~~~g-~v~l~~~--------~~  423 (814)
T 3mkq_A          360 QSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKA------FGKCQDFVWGPDSNSYALIDETG-QIKYYKN--------FK  423 (814)
T ss_dssp             SEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE------EEECSEEEECTTSSCEEEECTTC-CEEEEET--------TE
T ss_pred             ceeEECCCCCEEEEec-CCEEEEEECccccccC------CCceEEEEEeCCCCeEEEEeCCC-cEEEEEC--------CC
Confidence            8999999999999988 8999999986543322      23567899999999999999988 9999963        35


Q ss_pred             CcccCeEEEEEcCCC---CEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEE------eCCCeEEE
Q 038577          475 GHEGPVHGLVFSPTN---ATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACS------TLDGQIHF  545 (860)
Q Consensus       475 ~h~~~v~~l~~s~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~------~~dg~i~i  545 (860)
                      +|...+.+++|+|++   .+|++++.|+.|++||+.+++.......+..   .++|+|||++|+++      +.++.+.+
T Consensus       424 ~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~  500 (814)
T 3mkq_A          424 EVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTL  500 (814)
T ss_dssp             ECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEE
T ss_pred             CccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEE
Confidence            688889999999998   6889999999999999999886666655553   89999999999999      66655555


Q ss_pred             Ee
Q 038577          546 WD  547 (860)
Q Consensus       546 wd  547 (860)
                      |.
T Consensus       501 ~~  502 (814)
T 3mkq_A          501 LF  502 (814)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.4e-47  Score=449.52  Aligned_cols=438  Identities=15%  Similarity=0.222  Sum_probs=375.5

Q ss_pred             EEee-cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeE
Q 038577           88 HRVR-FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAV  165 (860)
Q Consensus        88 ~~~~-~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v  165 (860)
                      +.+. |.+.|.+++|+|+|++||++ .++.|+|||+.+++       ....+.+|.+.|.+++|+|++++|++++.||.|
T Consensus         7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i   79 (814)
T 3mkq_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-------EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI   79 (814)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred             eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-------eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeE
Confidence            3344 89999999999999999999 68899999999876       478888999999999999999999999999999


Q ss_pred             EEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCC
Q 038577          166 RLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTP  245 (860)
Q Consensus       166 ~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  245 (860)
                      ++||+.++      .....+.+|.+.|.+++|+|+++     +|++++.||.|++|++.++..                 
T Consensus        80 ~vw~~~~~------~~~~~~~~~~~~v~~~~~s~~~~-----~l~~~~~dg~i~vw~~~~~~~-----------------  131 (814)
T 3mkq_A           80 RVFNYNTG------EKVVDFEAHPDYIRSIAVHPTKP-----YVLSGSDDLTVKLWNWENNWA-----------------  131 (814)
T ss_dssp             EEEETTTC------CEEEEEECCSSCEEEEEECSSSS-----EEEEEETTSEEEEEEGGGTSE-----------------
T ss_pred             EEEECCCC------cEEEEEecCCCCEEEEEEeCCCC-----EEEEEcCCCEEEEEECCCCce-----------------
Confidence            99999988      66788899999999999999999     999999999999999986421                 


Q ss_pred             cceeeeEEeeeeccccCCCCceEEEEecC-CCCEEEEEEcCCeEEEEECCCceeEEEEeecC-ceeEEEEEee--CCCEE
Q 038577          246 ERRVKKWGLLRKDDFSQAPSKVTACDYHR-GLDMVVVGFSNGVFGLYQMPDFVCIHLLSISR-EKITTAVFNE--LGNWL  321 (860)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~-~~i~~~~~s~--~~~~l  321 (860)
                                ....+..|...|.+++|+| +++.+++++.||.|++||+.++.....+..+. ..+..++|+|  ++..+
T Consensus       132 ----------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  201 (814)
T 3mkq_A          132 ----------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM  201 (814)
T ss_dssp             ----------EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEE
T ss_pred             ----------EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEE
Confidence                      1234456788999999999 88999999999999999998888877777665 7899999999  88988


Q ss_pred             EEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEee
Q 038577          322 VFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMA  401 (860)
Q Consensus       322 ~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~  401 (860)
                      ++++.+ |.|++||..++..+..+.+|...|.+++|+|+++++++++.||.|++||+.++.....+..|...+.+++|+|
T Consensus       202 ~~~~~d-g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~  280 (814)
T 3mkq_A          202 ITASDD-LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP  280 (814)
T ss_dssp             EEECTT-SEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECT
T ss_pred             EEEeCC-CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEcc
Confidence            888765 9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCE-EEEEeCCCcEEEEEccccceeeEee------------------------------------------CCCCCcEE
Q 038577          402 NNHS-LLSASLDGTVRAWDLFRYRNFRTFT------------------------------------------TPSSRQFV  438 (860)
Q Consensus       402 ~~~~-l~s~~~dg~i~~wd~~~~~~~~~~~------------------------------------------~~~~~~~~  438 (860)
                      ++.. +++++.++.+.+|++........+.                                          ......+.
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (814)
T 3mkq_A          281 TGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQ  360 (814)
T ss_dssp             TCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCS
T ss_pred             CCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCc
Confidence            9864 3555567788899876433221111                                          11223467


Q ss_pred             EEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEccc
Q 038577          439 SLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPH  518 (860)
Q Consensus       439 ~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  518 (860)
                      +++++|+|+++++++ ++ .+.+|++......     +.+.+.+++|+|+++++++++.+|.|++|+..        .+|
T Consensus       361 ~~~~spdg~~la~~~-~~-~~~i~~~~~~~~~-----~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~--------~~~  425 (814)
T 3mkq_A          361 SLAHSPNGRFVTVVG-DG-EYVIYTALAWRNK-----AFGKCQDFVWGPDSNSYALIDETGQIKYYKNF--------KEV  425 (814)
T ss_dssp             EEEECTTSSEEEEEE-TT-EEEEEETTTTEEE-----EEEECSEEEECTTSSCEEEECTTCCEEEEETT--------EEC
T ss_pred             eeEECCCCCEEEEec-CC-EEEEEECcccccc-----CCCceEEEEEeCCCCeEEEEeCCCcEEEEECC--------CCc
Confidence            899999999999998 55 8999998754432     35678899999999999999999999999632        346


Q ss_pred             CCCeEEEEEeeCC---CEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCE
Q 038577          519 THDVLTVVYRPDG---RQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSY  595 (860)
Q Consensus       519 ~~~v~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~  595 (860)
                      ...+.+++|+|++   .+|++++.|+.|++||+.+++.+..+..+.                       ..++|+|||++
T Consensus       426 ~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~-----------------------~~v~~s~dg~~  482 (814)
T 3mkq_A          426 TSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNA-----------------------KDVIWSDNGEL  482 (814)
T ss_dssp             TTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCE-----------------------EEEEECTTSSE
T ss_pred             cceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecCC-----------------------CEEEEcCCCCE
Confidence            6778899999998   688999999999999999999998887764                       38999999999


Q ss_pred             EEEe------cCCCeEEEEE
Q 038577          596 ILAG------GSSKYICMYD  609 (860)
Q Consensus       596 l~~~------~~dg~v~vwd  609 (860)
                      |+++      +.++.+.+|-
T Consensus       483 la~~~~~~~~~~~~~~~~~~  502 (814)
T 3mkq_A          483 VMIVNTNSNGDEASGYTLLF  502 (814)
T ss_dssp             EEEEECCCSSCSCSEEEEEE
T ss_pred             EEEEEcCcccCCceEEEEEe
Confidence            9999      6666555554

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=9.1e-42  Score=350.79  Aligned_cols=292  Identities=22%  Similarity=0.373  Sum_probs=266.2

Q ss_pred             eeEEEEeecCceeEEEEEeeC----CCEEEEEEccCCcEEEEEccCceE--EEEecCcccCeEEEEEcCCCCEEEEEeCC
Q 038577          297 VCIHLLSISREKITTAVFNEL----GNWLVFGCAKLGQLLVWEWRSESY--ILKQQGHYFDVNCLAYSPDSQLLATGADD  370 (860)
Q Consensus       297 ~~~~~~~~~~~~i~~~~~s~~----~~~l~~~~~~~g~i~v~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  370 (860)
                      ........|.+.|.+++|+|+    +..+++++.+ +.|++|++..+..  ...+.+|...|.+++|++++..+++++.|
T Consensus        23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D-~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D  101 (321)
T 3ow8_A           23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLD-DLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD  101 (321)
T ss_dssp             EEEEETTSSSSCEEEEEEC-------CEEEEEETT-SCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCC-CCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence            334556679999999999985    4567776655 9999999987754  44578999999999999999999999999


Q ss_pred             CcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEE
Q 038577          371 NKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVIC  450 (860)
Q Consensus       371 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  450 (860)
                      +.|++||+.+++.+..+..|...+.+++|+|++++|++++.||.+++|++.+++....+... ...+.+++++|++++++
T Consensus       102 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~la  180 (321)
T 3ow8_A          102 AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTR-GKFILSIAYSPDGKYLA  180 (321)
T ss_dssp             SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECS-SSCEEEEEECTTSSEEE
T ss_pred             CcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCC-CceEEEEEECCCCCEEE
Confidence            99999999999999999999999999999999999999999999999999998887776654 44789999999999999


Q ss_pred             EEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeC
Q 038577          451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPD  530 (860)
Q Consensus       451 ~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  530 (860)
                      +++.|+ .|++||+++++.+..+.+|..+|.+++|+|++++|++++.||.|++||+.+++....+.+|...|.+++|+|+
T Consensus       181 sg~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~  259 (321)
T 3ow8_A          181 SGAIDG-IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD  259 (321)
T ss_dssp             EEETTS-CEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             EEcCCC-eEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCC
Confidence            999998 9999999999999999999999999999999999999999999999999999888888899999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEEC
Q 038577          531 GRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV  610 (860)
Q Consensus       531 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~  610 (860)
                      +++|++++.||.|++||+.+++++..+.+|..                    .|.+++|+|+|++|++++.||.|++||.
T Consensus       260 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~--------------------~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          260 DTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD--------------------QVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECCCSS--------------------CEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             CCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC--------------------cEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            99999999999999999999999999988875                    5999999999999999999999999997


Q ss_pred             C
Q 038577          611 A  611 (860)
Q Consensus       611 ~  611 (860)
                      +
T Consensus       320 p  320 (321)
T 3ow8_A          320 P  320 (321)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.9e-42  Score=366.48  Aligned_cols=290  Identities=23%  Similarity=0.400  Sum_probs=272.2

Q ss_pred             EEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 038577          299 IHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTV  378 (860)
Q Consensus       299 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  378 (860)
                      ...+..|..+|++++|+|++..+++++.+ |.|++||+.+++....+.+|...|.+++|+|++++|++|+.|++|++||+
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~D-g~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~  179 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASED-ATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF  179 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESS-SCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCC-CeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence            34567889999999999999999988876 99999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCe
Q 038577          379 SSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFE  458 (860)
Q Consensus       379 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  458 (860)
                      .+++++..+.+|...|.+++|+|+++++++++.|+.|++||+.++.+...+..+ ...+.++.++|++.++++++.|+ .
T Consensus       180 ~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h-~~~v~~~~~~~~g~~l~s~s~D~-~  257 (410)
T 1vyh_C          180 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH-REWVRMVRPNQDGTLIASCSNDQ-T  257 (410)
T ss_dssp             TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECTTSSEEEEEETTS-C
T ss_pred             CCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCC-CccEEEEEECCCCCEEEEEcCCC-e
Confidence            999999999999999999999999999999999999999999999988887654 45789999999999999999999 9


Q ss_pred             EEEEECCCCceEEEecCcccCeEEEEEcCC--------------------CCEEEEEeCCCcEEEEEccCCcceeEEccc
Q 038577          459 IFVWSMKTGRLLDILSGHEGPVHGLVFSPT--------------------NATLASSSWDKTVRLWNVFEGKGSVESFPH  518 (860)
Q Consensus       459 i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~--------------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  518 (860)
                      |++||+.+++....+.+|...|.+++|+|+                    +.+|++|+.|+.|++||+.++.....+.+|
T Consensus       258 v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h  337 (410)
T 1vyh_C          258 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH  337 (410)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             EEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECC
Confidence            999999999999999999999999999996                    678999999999999999999888888899


Q ss_pred             CCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEE
Q 038577          519 THDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILA  598 (860)
Q Consensus       519 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~  598 (860)
                      ...|++++|+|+|++|++++.||.|++||+.+++++..+.+|..                    .|++++|+|++.+|++
T Consensus       338 ~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--------------------~v~~l~~~~~~~~l~s  397 (410)
T 1vyh_C          338 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--------------------FVTSLDFHKTAPYVVT  397 (410)
T ss_dssp             SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--------------------CEEEEEECSSSSCEEE
T ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC--------------------cEEEEEEcCCCCEEEE
Confidence            99999999999999999999999999999999999999988875                    5999999999999999


Q ss_pred             ecCCCeEEEEECC
Q 038577          599 GGSSKYICMYDVA  611 (860)
Q Consensus       599 ~~~dg~v~vwd~~  611 (860)
                      |+.||+|++|+++
T Consensus       398 gs~D~~i~vW~~r  410 (410)
T 1vyh_C          398 GSVDQTVKVWECR  410 (410)
T ss_dssp             EETTSEEEEEC--
T ss_pred             EeCCCcEEEEeCC
Confidence            9999999999863

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=8.5e-41  Score=347.72  Aligned_cols=293  Identities=24%  Similarity=0.384  Sum_probs=260.2

Q ss_pred             EEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEE
Q 038577          133 LIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTI  212 (860)
Q Consensus       133 ~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~  212 (860)
                      ....+.+|.+.|.+++|+||+++|++++.||.|++||..++      .....+..|...|.+++|+|++.     +++++
T Consensus        47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~------~~~~~~~~~~~~v~~~~~s~~~~-----~l~s~  115 (340)
T 1got_B           47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT------NKVHAIPLRSSWVMTCAYAPSGN-----YVACG  115 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC------CEEEEEECSSSCEEEEEECTTSS-----EEEEE
T ss_pred             hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC------CcceEeecCCccEEEEEECCCCC-----EEEEE
Confidence            56789999999999999999999999999999999999887      56778889999999999999998     99999


Q ss_pred             cCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEE
Q 038577          213 ARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQ  292 (860)
Q Consensus       213 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~  292 (860)
                      +.|+.+++|++.+...                                                                
T Consensus       116 ~~d~~v~iw~~~~~~~----------------------------------------------------------------  131 (340)
T 1got_B          116 GLDNICSIYNLKTREG----------------------------------------------------------------  131 (340)
T ss_dssp             ETTCEEEEEETTTCSB----------------------------------------------------------------
T ss_pred             eCCCeEEEEECccCCC----------------------------------------------------------------
Confidence            9999999998765311                                                                


Q ss_pred             CCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCc
Q 038577          293 MPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNK  372 (860)
Q Consensus       293 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  372 (860)
                        .......+..|...+.++.|++++. +++++. |+.|++||+.+++.+..+.+|...|.+++|+|+++++++|+.||.
T Consensus       132 --~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~-d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~  207 (340)
T 1got_B          132 --NVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS  207 (340)
T ss_dssp             --SCEEEEEEECCSSCEEEEEEEETTE-EEEEET-TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             --cceeEEEecCCCccEEEEEECCCCc-EEEEEC-CCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCc
Confidence              0112233455667778888887765 555554 499999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCC-CCcEEEEEECCCCCEEEE
Q 038577          373 VKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPS-SRQFVSLASDQSGEVICA  451 (860)
Q Consensus       373 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~  451 (860)
                      |++||+.++.....+.+|...|.+++|+|++++|++++.||.|++||+++++....+.... ...+.+++|+|+|+++++
T Consensus       208 v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  287 (340)
T 1got_B          208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA  287 (340)
T ss_dssp             EEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred             EEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEE
Confidence            9999999999999999999999999999999999999999999999999888777665432 346899999999999999


Q ss_pred             EecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038577          452 GTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN  505 (860)
Q Consensus       452 ~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  505 (860)
                      ++.|+ .|++||+.+++.+..+.+|.++|.+++|+|++.+|++++.||+|++||
T Consensus       288 g~~d~-~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          288 GYDDF-NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EETTS-EEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ECCCC-eEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            99998 999999999999999999999999999999999999999999999996

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.5e-41  Score=361.01  Aligned_cols=288  Identities=21%  Similarity=0.357  Sum_probs=272.0

Q ss_pred             ccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc
Q 038577          258 DDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR  337 (860)
Q Consensus       258 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~  337 (860)
                      ..+.+|...|++++|+|++.++++|+.||.|++||+.+++....+..|...|.+++|+|+++.+++++.+ +.|++||+.
T Consensus       102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D-~~i~iwd~~  180 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD-MTIKLWDFQ  180 (410)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETT-SCCCEEETT
T ss_pred             EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCC-CeEEEEeCC
Confidence            3456889999999999999999999999999999999999999999999999999999999999888776 999999999


Q ss_pred             CceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 038577          338 SESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRA  417 (860)
Q Consensus       338 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~  417 (860)
                      +++.+..+.+|...|.+++|+|+++++++|+.|+.|++||+.++.++..+.+|...|.++.++|++.++++++.|+.|++
T Consensus       181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~v  260 (410)
T 1vyh_C          181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV  260 (410)
T ss_dssp             SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccccceeeEeeCCCCCcEEEEEECCC--------------------CCEEEEEecCCCeEEEEECCCCceEEEecCcc
Q 038577          418 WDLFRYRNFRTFTTPSSRQFVSLASDQS--------------------GEVICAGTLDSFEIFVWSMKTGRLLDILSGHE  477 (860)
Q Consensus       418 wd~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~  477 (860)
                      ||+.+++....+.. +...+.+++|+|+                    |.++++++.|+ .|++||+++++.+..+.+|.
T Consensus       261 wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~-~i~iwd~~~~~~~~~~~~h~  338 (410)
T 1vyh_C          261 WVVATKECKAELRE-HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK-TIKMWDVSTGMCLMTLVGHD  338 (410)
T ss_dssp             EETTTCCEEEEECC-CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS-EEEEEETTTTEEEEEEECCS
T ss_pred             EECCCCceeeEecC-CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC-eEEEEECCCCceEEEEECCC
Confidence            99999888777654 4568999999996                    67899999999 99999999999999999999


Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeC
Q 038577          478 GPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDP  548 (860)
Q Consensus       478 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  548 (860)
                      ..|.+++|+|++++|++++.||.|++||+.+++....+..|...|++++|+|++.+|++|+.||.|++|++
T Consensus       339 ~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          339 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            99999999999999999999999999999999888888899999999999999999999999999999986

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.2e-40  Score=344.63  Aligned_cols=290  Identities=20%  Similarity=0.330  Sum_probs=265.0

Q ss_pred             ceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 038577          296 FVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKV  375 (860)
Q Consensus       296 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  375 (860)
                      ......+..|...|.+++|+|+++.+++++.+ |.|++||..++..+..+..|...|.+++|+|+++++++|+.|+.|++
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~D-g~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i  123 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQD-GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI  123 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETT-TEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCC-CcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence            34567788999999999999999999988776 99999999999999999999999999999999999999999999999


Q ss_pred             EECCCC----eeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEE
Q 038577          376 WTVSSG----FCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICA  451 (860)
Q Consensus       376 wd~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  451 (860)
                      |++.++    .....+.+|...|.++.|++++ .+++++.|+.|++||+.+++....+.. +...+.+++++|+++++++
T Consensus       124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s  201 (340)
T 1got_B          124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVS  201 (340)
T ss_dssp             EETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEE
T ss_pred             EECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcC-CCCceEEEEECCCCCEEEE
Confidence            999865    4566788999999999999887 489999999999999999988877764 4558999999999999999


Q ss_pred             EecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc--ccCCCeEEEEEee
Q 038577          452 GTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF--PHTHDVLTVVYRP  529 (860)
Q Consensus       452 ~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~  529 (860)
                      ++.|+ .|++||+++++....+.+|...|.+++|+|++++|++++.||+|++||+.+++......  .+...|++++|+|
T Consensus       202 g~~d~-~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  280 (340)
T 1got_B          202 GACDA-SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK  280 (340)
T ss_dssp             EETTS-CEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT
T ss_pred             EeCCC-cEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECC
Confidence            99999 99999999999999999999999999999999999999999999999999887554443  2335799999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEE
Q 038577          530 DGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYD  609 (860)
Q Consensus       530 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd  609 (860)
                      +|++|++|+.||.|++||+.+++.+..+.+|..                    .|.+++|+|+|++|++|+.||.|++||
T Consensus       281 ~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~--------------------~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--------------------RVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--------------------CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCEEEEECCCCeEEEEEcccCcEeeEeecCCC--------------------cEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            999999999999999999999999999998875                    599999999999999999999999997

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=1e-39  Score=391.09  Aligned_cols=525  Identities=11%  Similarity=0.045  Sum_probs=393.3

Q ss_pred             CceecccccccccC--CcEEEeCCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCC------
Q 038577            2 NYRFQNLLGAPYRG--GNAVLSQNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDEN------   73 (860)
Q Consensus         2 ~~~~~~~~g~~~~~--~~~~~sdg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d------   73 (860)
                      +|++....|....+  ...+|| +++|++...+.|++|++.+++...+. +|...+.+++|||||++||+++.+      
T Consensus         2 ~~kl~~~~g~~~~~~~~~~~~S-~~~iaf~~~~~l~~~~~~gg~~~~lt-~~~~~v~~~~~SPDG~~la~~s~~~~~~~~   79 (1045)
T 1k32_A            2 TFKLHEMHGLCMPNLLLNPDIH-GDRIIFVCCDDLWEHDLKSGSTRKIV-SNLGVINNARFFPDGRKIAIRVMRGSSLNT   79 (1045)
T ss_dssp             -----------CCCCCEEEEEE-TTEEEEEETTEEEEEETTTCCEEEEE-CSSSEEEEEEECTTSSEEEEEEEESTTCCE
T ss_pred             cccccccccccccceEeCcEEe-CCEEEEEECCcEEEEECCCCcEEEee-eCCCcccCeEECCCCCEEEEEEeeccCCCC
Confidence            35666655553322  245566 66899998899999999999876665 799999999999999999988543      


Q ss_pred             CcEEEEEcccCeEEEEeecCCce-------eEEEECCCCCEEEEEeC-------CeEEEEeCCCCCcccceeEEEEEeec
Q 038577           74 QRCHFINLHCHVVLHRVRFKYPV-------NAILFSPNGKYIAVGTG-------KLVQIWRSPGFKKEVFAFELIRTLAD  139 (860)
Q Consensus        74 ~~i~vwd~~~~~~~~~~~~~~~v-------~~~~fspdg~~la~~~~-------~~i~iwd~~~~~~~~~~~~~~~~~~~  139 (860)
                      ..|++||+.+++......|...+       .+++|||||++++++..       ..|++|++.+++        ...+..
T Consensus        80 ~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~--------~~~l~~  151 (1045)
T 1k32_A           80 ADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN--------FVPLNL  151 (1045)
T ss_dssp             EEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE--------EEECCS
T ss_pred             CeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCC--------eEEecC
Confidence            47999999988854444477777       89999999996666632       358888887764        234443


Q ss_pred             cCCCeEEEEEcCCCCeEEEeec------------CCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccc
Q 038577          140 CNDKVTALNWSPDSNYLLVGSK------------DLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVN  207 (860)
Q Consensus       140 h~~~v~~l~~s~d~~~l~s~~~------------dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~  207 (860)
                      +.  ...++|+| | ++++++.            +....+|.....      .....+.+|...+.++.|+++ .     
T Consensus       152 ~~--~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~------~~~~~l~~~~~~v~~~~~s~d-~-----  215 (1045)
T 1k32_A          152 GP--ATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNS------GAFKKIVDMSTHVSSPVIVGH-R-----  215 (1045)
T ss_dssp             CS--CSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEET------TEEEEEECCSSCCEEEEEETT-E-----
T ss_pred             CC--cceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCC------CCeEECcCCCCcccceEEeCC-E-----
Confidence            33  35678999 8 8888753            345677765443      234556899999999999988 5     


Q ss_pred             eEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCe
Q 038577          208 RIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGV  287 (860)
Q Consensus       208 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~  287 (860)
                      .+++++.|+.+.+|.+.....                           ....+..+. .+...+|+|+|+.++++ .++.
T Consensus       216 l~~~~~~dg~~~l~~~~~~g~---------------------------~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~  266 (1045)
T 1k32_A          216 IYFITDIDGFGQIYSTDLDGK---------------------------DLRKHTSFT-DYYPRHLNTDGRRILFS-KGGS  266 (1045)
T ss_dssp             EEEEECTTSSCEEEEEETTSC---------------------------SCEECCCCC-SSCEEEEEESSSCEEEE-ETTE
T ss_pred             EEEEEeccCceEEEEEeCCCC---------------------------cceEecCCC-CcceeeEcCCCCEEEEE-eCCE
Confidence            788888899999998764221                           001111222 35567999999999887 5899


Q ss_pred             EEEEECCCceeEEEEee-----------cCceeEEEEEe-eCCCEEEEEEccCCcEEEEEccCceEEEEecCccc-CeEE
Q 038577          288 FGLYQMPDFVCIHLLSI-----------SREKITTAVFN-ELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYF-DVNC  354 (860)
Q Consensus       288 i~~~~~~~~~~~~~~~~-----------~~~~i~~~~~s-~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~-~v~~  354 (860)
                      |++|++... .+..+..           +...+..++|+ |||+.++++.  ++.+.+|+..++.... +..|.. .+..
T Consensus       267 i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~~~~-~~~~~~~~~~~  342 (1045)
T 1k32_A          267 IYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVLK-VPEPLRIRYVR  342 (1045)
T ss_dssp             EEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEEECTTSSBEEE-CSCCSCEEEEE
T ss_pred             EEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEEEcCCCCceEE-ccCCCcceEEe
Confidence            999999443 3334443           23368999999 9999999887  4899999998876543 556666 8999


Q ss_pred             EEEcCCCCEEEEEeCCCcEE-EEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCC
Q 038577          355 LAYSPDSQLLATGADDNKVK-VWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPS  433 (860)
Q Consensus       355 ~~~s~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~  433 (860)
                      ++|+ +|+.+++++.++.+. +|++.++.... +..|...+..++|+|||++|++++.++.+++||+.+++....... +
T Consensus       343 ~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~-~  419 (1045)
T 1k32_A          343 RGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS-R  419 (1045)
T ss_dssp             ECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-S
T ss_pred             eeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC-C
Confidence            9999 999999999888888 99998776544 447888999999999999999999999999999998877665533 4


Q ss_pred             CCcEEEEEECCCCCEEEEEecCC---------CeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038577          434 SRQFVSLASDQSGEVICAGTLDS---------FEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLW  504 (860)
Q Consensus       434 ~~~~~~~~~~~~~~~l~~~~~~~---------~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw  504 (860)
                      ...+..++|+|||+++++++.++         ..|++||+.+++ ...+..|...+..++|+|||++|++++.++...+|
T Consensus       420 ~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~  498 (1045)
T 1k32_A          420 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSP  498 (1045)
T ss_dssp             SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEE
T ss_pred             CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCc
Confidence            45678899999999998877643         489999999887 67777888889999999999999999988777777


Q ss_pred             EccCCcc-------------------------------------------eeEEcccCCCeEEEEEeeCCCEEEE-----
Q 038577          505 NVFEGKG-------------------------------------------SVESFPHTHDVLTVVYRPDGRQLAC-----  536 (860)
Q Consensus       505 d~~~~~~-------------------------------------------~~~~~~~~~~v~~~~~s~~~~~l~~-----  536 (860)
                      +......                                           ...+..+...+..++++|||.++++     
T Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g  578 (1045)
T 1k32_A          499 DRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHG  578 (1045)
T ss_dssp             CSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCC
T ss_pred             chhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccC
Confidence            6432210                                           1122235577899999999987875     


Q ss_pred             --------EeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEE
Q 038577          537 --------STLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMY  608 (860)
Q Consensus       537 --------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw  608 (860)
                              ......|.+||+.+++.....   .                     .+.+++|||||++|++++.+ .|++|
T Consensus       579 ~~~~~~~~~~~~~~l~~~d~~~~~~~~l~---~---------------------~v~~~~~S~DG~~l~~~~~~-~i~~~  633 (1045)
T 1k32_A          579 EFAAYYQGAPEKGVLLKYDVKTRKVTEVK---N---------------------NLTDLRLSADRKTVMVRKDD-GKIYT  633 (1045)
T ss_dssp             SHHHHHHCCCCCEEEEEEETTTCCEEEEE---E---------------------EEEEEEECTTSCEEEEEETT-SCEEE
T ss_pred             cccccccccCCCceEEEEECCCCcEEEee---c---------------------CcceEEECCCCCEEEEEcCC-cEEEE
Confidence                    123457899999888754332   2                     27899999999999998876 79999


Q ss_pred             ECCCce
Q 038577          609 DVADQV  614 (860)
Q Consensus       609 d~~~~~  614 (860)
                      |+.+++
T Consensus       634 d~~~~~  639 (1045)
T 1k32_A          634 FPLEKP  639 (1045)
T ss_dssp             EESSCT
T ss_pred             eCccCc
Confidence            998876

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.8e-40  Score=337.81  Aligned_cols=291  Identities=22%  Similarity=0.324  Sum_probs=266.2

Q ss_pred             eccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEc
Q 038577          257 KDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEW  336 (860)
Q Consensus       257 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~  336 (860)
                      ...+.+|...|.+++|+|+++++++++.||.|++||+.++..+..+..+...+.+++|+|+++++++++.+ +.|++||+
T Consensus         6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d-~~i~vwd~   84 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDD-FRIRVFNY   84 (304)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETT-SEEEEEET
T ss_pred             EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCC-CEEEEEEC
Confidence            34566788999999999999999999999999999999999999999999999999999999999998876 99999999


Q ss_pred             cCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEeecCCCceEEEEEee-CCCEEEEEeCCCc
Q 038577          337 RSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSG-FCFVTFTEHTNAVTALHFMA-NNHSLLSASLDGT  414 (860)
Q Consensus       337 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~  414 (860)
                      .+++.+..+.+|...|.+++|+|+++++++|+.|++|++||+.++ .....+.+|...|.+++|+| ++..|++++.|+.
T Consensus        85 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~  164 (304)
T 2ynn_A           85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT  164 (304)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE
T ss_pred             CCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe
Confidence            999999999999999999999999999999999999999999877 55677889999999999999 6789999999999


Q ss_pred             EEEEEccccceeeEeeCCCCCcEEEEEECC--CCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEE
Q 038577          415 VRAWDLFRYRNFRTFTTPSSRQFVSLASDQ--SGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATL  492 (860)
Q Consensus       415 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l  492 (860)
                      |++||+.+......+...+...+..+.++|  ++.++++++.|+ .|++||+++++.+..+.+|...|.+++|+|++++|
T Consensus       165 v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~-~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l  243 (304)
T 2ynn_A          165 VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL-TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPII  243 (304)
T ss_dssp             EEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTS-EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEE
T ss_pred             EEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCC-eEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEE
Confidence            999999988877777777767788888876  788999999999 99999999999999999999999999999999999


Q ss_pred             EEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCC--EEEEEeCCCeEEEEeCCC
Q 038577          493 ASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGR--QLACSTLDGQIHFWDPLN  550 (860)
Q Consensus       493 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~iwd~~~  550 (860)
                      ++++.||+|++||+.+++....+..|...+.+++|+|++.  ++++|+.|| +.+|++.+
T Consensus       244 ~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~  302 (304)
T 2ynn_A          244 ISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN  302 (304)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred             EEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence            9999999999999999988888888999999999999875  577777655 77887754

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=8.8e-42  Score=356.76  Aligned_cols=321  Identities=16%  Similarity=0.128  Sum_probs=241.3

Q ss_pred             EEEe-CCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcC------CCcEEEEEcccCeEE---
Q 038577           18 AVLS-QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDE------NQRCHFINLHCHVVL---   87 (860)
Q Consensus        18 ~~~s-dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~------d~~i~vwd~~~~~~~---   87 (860)
                      +.+. ++.++....+.....|++....    +..|...|.+++|||||++||+++.      |+.|++|+..++...   
T Consensus        11 ~d~g~~~~~~~~~g~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~   86 (357)
T 4g56_B           11 VDLGTENLYFQSNGSSKGSAWGRPVTA----PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESL   86 (357)
T ss_dssp             ---------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGG
T ss_pred             CCCCccceEEecCCCccccccCCCCCC----cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeE
Confidence            4445 5555555555778999886543    3479999999999999999999987      678999998776543   


Q ss_pred             --EEeecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeE
Q 038577           88 --HRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAV  165 (860)
Q Consensus        88 --~~~~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v  165 (860)
                        ....|...|.+++|+|++++++++.++.|+|||+.+++....   ......+|.+.|++++|+|++++|++++.|+.|
T Consensus        87 ~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~---~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v  163 (357)
T 4g56_B           87 CTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLV---NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSV  163 (357)
T ss_dssp             CSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CC---CCEEECCCSSCEEEEEECSSSSEEEEEETTSCE
T ss_pred             ecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEE---EeeccCCCCCCEEEEEECCCCCEEEEEeCCCeE
Confidence              334588899999999999999888999999999988763211   123456899999999999999999999999999


Q ss_pred             EEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCC
Q 038577          166 RLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTP  245 (860)
Q Consensus       166 ~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  245 (860)
                      ++||+.++      .....+.+|...|.+++|++++..    .+++++.|++|++||+.++...                
T Consensus       164 ~iwd~~~~------~~~~~~~~h~~~v~~v~~s~~~~~----~~~s~~~dg~v~~wd~~~~~~~----------------  217 (357)
T 4g56_B          164 KVWDLSQK------AVLKSYNAHSSEVNCVAACPGKDT----IFLSCGEDGRILLWDTRKPKPA----------------  217 (357)
T ss_dssp             EEEETTTT------EEEEEECCCSSCEEEEEECTTCSS----CEEEEETTSCEEECCTTSSSCB----------------
T ss_pred             EEEECCCC------cEEEEEcCCCCCEEEEEEccCCCc----eeeeeccCCceEEEECCCCcee----------------
Confidence            99999988      678889999999999999998753    7899999999999999875431                


Q ss_pred             cceeeeEEeeeeccccCCCCceEEEEecCCC-CEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEE
Q 038577          246 ERRVKKWGLLRKDDFSQAPSKVTACDYHRGL-DMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFG  324 (860)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  324 (860)
                                .......+...+.+++|+|++ .++++|+.|+.|++||+.+++.+..+..+...|.+++|+|++..++++
T Consensus       218 ----------~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~las  287 (357)
T 4g56_B          218 ----------TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLAS  287 (357)
T ss_dssp             ----------CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEE
T ss_pred             ----------eeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEE
Confidence                      112233456779999999985 678899999999999999999999999999999999999998654444


Q ss_pred             EccCCcEEEEEccCceEEEEecCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCe
Q 038577          325 CAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSP-DSQLLATGADDNKVKVWTVSSGF  382 (860)
Q Consensus       325 ~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~  382 (860)
                      ++.|+.|++||+++++.+.. .+|...|++++|+| ++.+|++++.||+|++|++.+..
T Consensus       288 gs~D~~i~iwd~~~~~~~~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          288 ISEDCTVAVLDADFSEVFRD-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             EETTSCEEEECTTSCEEEEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred             EeCCCEEEEEECCCCcEeEE-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence            45569999999999887765 47999999999998 79999999999999999997543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.9e-40  Score=335.95  Aligned_cols=294  Identities=17%  Similarity=0.281  Sum_probs=264.1

Q ss_pred             eeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038577          297 VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVW  376 (860)
Q Consensus       297 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  376 (860)
                      +...++..|.+.|.+++|+|+++++++++.+ |.|++||+.++..+..+..|..+|.+++|+|++++|++|+.|+.|++|
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~d-g~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw   82 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYS-GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETT-SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCC-CcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence            4466788899999999999999999998876 999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECC-CCCEEEEEecC
Q 038577          377 TVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQ-SGEVICAGTLD  455 (860)
Q Consensus       377 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~  455 (860)
                      |+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+.++.........+...+.+++|+| ++..+++++.|
T Consensus        83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D  162 (304)
T 2ynn_A           83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD  162 (304)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred             ECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence            99999999999999999999999999999999999999999999988666555556677899999999 67899999999


Q ss_pred             CCeEEEEECCCCceEEEe-cCcccCeEEEEEcC--CCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCC
Q 038577          456 SFEIFVWSMKTGRLLDIL-SGHEGPVHGLVFSP--TNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGR  532 (860)
Q Consensus       456 ~~~i~v~d~~~~~~~~~~-~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~  532 (860)
                      + .|++||+.++.....+ .+|...+..+.|+|  ++++|++++.|++|++||+.+++....+.+|...|.+++|+|+++
T Consensus       163 ~-~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~  241 (304)
T 2ynn_A          163 R-TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP  241 (304)
T ss_dssp             S-EEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS
T ss_pred             C-eEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCC
Confidence            9 9999999887766555 45668899999987  778999999999999999999988888889999999999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCC--EEEEecCCCeEEEEEC
Q 038577          533 QLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGS--YILAGGSSKYICMYDV  610 (860)
Q Consensus       533 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~--~l~~~~~dg~v~vwd~  610 (860)
                      +|++++.||.|++||+.+++++..+..+..                    .+.+++|+|++.  ++++|+.|| +.+|++
T Consensus       242 ~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~asg~~~g-~~~~~~  300 (304)
T 2ynn_A          242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLE--------------------RSWCIATHPTGRKNYIASGFDNG-FTVLSL  300 (304)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCSSS--------------------SEEEEEECTTCGGGCEEEEETTE-EEEEEC
T ss_pred             EEEEEcCCCeEEEEECCCCceeeeccCCCc--------------------cEEEEEECCCCCceEEEEecCCc-eEEEEe
Confidence            999999999999999999999999987764                    489999999886  577776655 778877


Q ss_pred             CCc
Q 038577          611 ADQ  613 (860)
Q Consensus       611 ~~~  613 (860)
                      .+.
T Consensus       301 ~~~  303 (304)
T 2ynn_A          301 GND  303 (304)
T ss_dssp             C--
T ss_pred             ccC
Confidence            653

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-40  Score=360.89  Aligned_cols=339  Identities=11%  Similarity=0.133  Sum_probs=288.2

Q ss_pred             eEEEEECCCCcEEeeccCCccCeeEEEEcCCCC-EEEEEcCCCcEEEEEc----ccCe------EEEEeec---------
Q 038577           33 RVSVTDLIKSKTVTLPVESSSNICRIAVSPDGT-FLLTVDENQRCHFINL----HCHV------VLHRVRF---------   92 (860)
Q Consensus        33 ~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~-~la~~~~d~~i~vwd~----~~~~------~~~~~~~---------   92 (860)
                      .+.+|+............|...|++++|+|+|+ +||+++.||.|++||+    .+++      ....+.+         
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (425)
T 1r5m_A           26 IDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSG  105 (425)
T ss_dssp             --------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC----
T ss_pred             ccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccccc
Confidence            366888877766655556779999999999999 9999999999999999    8888      4555543         


Q ss_pred             --CCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEe
Q 038577           93 --KYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFY  169 (860)
Q Consensus        93 --~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd  169 (860)
                        ...|++++|+|++++|+++ .++.|++|| .+++       ....+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus       106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  177 (425)
T 1r5m_A          106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGA-------LLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWN  177 (425)
T ss_dssp             --CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSC-------EEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCC-------eeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEE
Confidence              5589999999999999999 789999999 3333       4678889999999999999999999999999999999


Q ss_pred             ecccccCcccccceEeecCCCc---------------EEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCcccc
Q 038577          170 VKEKLKGIHTNKPFLLLGHRDS---------------VVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETM  234 (860)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~h~~~---------------i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~  234 (860)
                      +.++      .....+..+...               +.++.|++++      .+++++.||.|++|++.++..      
T Consensus       178 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~g~i~~~d~~~~~~------  239 (425)
T 1r5m_A          178 VISG------TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD------KFVIPGPKGAIFVYQITEKTP------  239 (425)
T ss_dssp             TTTT------EEEEEECCC---------------CCCBSCCEEEETT------EEEEECGGGCEEEEETTCSSC------
T ss_pred             CCCC------cEEEEeeccccCccceeeccccCCcceeeEEEEcCCC------EEEEEcCCCeEEEEEcCCCce------
Confidence            9887      556667777666               8899999986      799999999999999987532      


Q ss_pred             CCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEE
Q 038577          235 EDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVF  314 (860)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~  314 (860)
                                            ...+..+...|.+++|+|+++++++++.+|.|++|++.+++....+..+...+.+++|
T Consensus       240 ----------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~  297 (425)
T 1r5m_A          240 ----------------------TGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASW  297 (425)
T ss_dssp             ----------------------SEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEE
T ss_pred             ----------------------eeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEE
Confidence                                  2233467788999999999999999999999999999999999999989999999999


Q ss_pred             eeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe------------
Q 038577          315 NELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGF------------  382 (860)
Q Consensus       315 s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~------------  382 (860)
                      +|++ .+++++.+ +.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++||+.++.            
T Consensus       298 ~~~~-~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~  375 (425)
T 1r5m_A          298 VGDD-KVISCSMD-GSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDG  375 (425)
T ss_dssp             ETTT-EEEEEETT-SEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-----------
T ss_pred             CCCC-EEEEEeCC-CcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeeccccc
Confidence            9999 66666554 999999999999999999999999999999999999999999999999999887            


Q ss_pred             --------eEEEeecCCC--ceEEEEEeeCCCEEEEEeCCCcEEEEEcc
Q 038577          383 --------CFVTFTEHTN--AVTALHFMANNHSLLSASLDGTVRAWDLF  421 (860)
Q Consensus       383 --------~~~~~~~~~~--~v~~i~~~~~~~~l~s~~~dg~i~~wd~~  421 (860)
                              .+..+..|..  .|.+++|+|++++|++++.||.|++|++.
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          376 ILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             ---CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             ccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence                    8889999976  99999999999999999999999999974

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.9e-40  Score=339.63  Aligned_cols=288  Identities=21%  Similarity=0.298  Sum_probs=265.9

Q ss_pred             cccCCCCceEEEEecCC----CCEEEEEEcCCeEEEEECCCcee--EEEEeecCceeEEEEEeeCCCEEEEEEccCCcEE
Q 038577          259 DFSQAPSKVTACDYHRG----LDMVVVGFSNGVFGLYQMPDFVC--IHLLSISREKITTAVFNELGNWLVFGCAKLGQLL  332 (860)
Q Consensus       259 ~~~~~~~~v~~~~~~~~----~~~l~~~~~~g~i~~~~~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~  332 (860)
                      ...+|...|.+++|+|+    +.+|++|+.|+.|++|++.+.+.  ...+.+|...|.+++|++++..+++++.+ +.|+
T Consensus        27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D-~~i~  105 (321)
T 3ow8_A           27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD-AHIR  105 (321)
T ss_dssp             ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT-SEEE
T ss_pred             ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC-CcEE
Confidence            34578999999999885    57899999999999999876654  45678899999999999999998888766 9999


Q ss_pred             EEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCC
Q 038577          333 VWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD  412 (860)
Q Consensus       333 v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d  412 (860)
                      +||+.+++.+..+..|...+.+++|+|++++|++++.||.|++|++.+++....+..|...|.+++|+|++++|++++.|
T Consensus       106 lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~d  185 (321)
T 3ow8_A          106 LWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAID  185 (321)
T ss_dssp             EEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCC
Confidence            99999999999998999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEE
Q 038577          413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATL  492 (860)
Q Consensus       413 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l  492 (860)
                      |.|++||+.+++.+..+.. +...+.+++|+|++++|++++.|+ .|++||+++++....+.+|...|.+++|+|++++|
T Consensus       186 g~i~iwd~~~~~~~~~~~~-h~~~v~~l~~spd~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l  263 (321)
T 3ow8_A          186 GIINIFDIATGKLLHTLEG-HAMPIRSLTFSPDSQLLVTASDDG-YIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHF  263 (321)
T ss_dssp             SCEEEEETTTTEEEEEECC-CSSCCCEEEECTTSCEEEEECTTS-CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             CeEEEEECCCCcEEEEEcc-cCCceeEEEEcCCCCEEEEEcCCC-eEEEEECCCcceeEEEcCCCCceEEEEECCCCCEE
Confidence            9999999999988877764 445789999999999999999998 99999999999999999999999999999999999


Q ss_pred             EEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCC
Q 038577          493 ASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPL  549 (860)
Q Consensus       493 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  549 (860)
                      ++++.|++|++||+.+++....+..|...|.+++|+|++++|++++.||.|++||..
T Consensus       264 ~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          264 VSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            999999999999999999888888999999999999999999999999999999963

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.3e-40  Score=347.95  Aligned_cols=327  Identities=17%  Similarity=0.196  Sum_probs=243.1

Q ss_pred             eEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeec------CCeEEEEee
Q 038577           97 NAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSK------DLAVRLFYV  170 (860)
Q Consensus        97 ~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~------dg~v~vwd~  170 (860)
                      ..+.+.+++.++...++.....|+++...           ...|...|++++|||||++||+++.      |+.|++|+.
T Consensus         9 sg~d~g~~~~~~~~~g~~~~~~w~~p~~~-----------p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~   77 (357)
T 4g56_B            9 SGVDLGTENLYFQSNGSSKGSAWGRPVTA-----------PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKD   77 (357)
T ss_dssp             ------------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESS
T ss_pred             cCCCCCccceEEecCCCccccccCCCCCC-----------cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEEC
Confidence            34566777777777777888999876443           3579999999999999999999997      778999988


Q ss_pred             cccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceee
Q 038577          171 KEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVK  250 (860)
Q Consensus       171 ~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (860)
                      .++...  ........+|...|.+++|+|++      .+++++.||+|++||+.++..                      
T Consensus        78 ~~~~~~--~~~~~~~~~~~~~V~~~~~s~d~------~~l~~s~dg~v~lWd~~~~~~----------------------  127 (357)
T 4g56_B           78 PEGAPN--ESLCTAGVQTEAGVTDVAWVSEK------GILVASDSGAVELWEILEKES----------------------  127 (357)
T ss_dssp             CC---C--GGGCSEEEECSSCEEEEEEETTT------EEEEEETTSCEEEC-----------------------------
T ss_pred             CCCCcc--eeEecccCCCCCCEEEEEEcCCC------CEEEEECCCEEEEeeccccce----------------------
Confidence            766111  12334556788889999999887      466677788888887765321                      


Q ss_pred             eEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCc
Q 038577          251 KWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQ  330 (860)
Q Consensus       251 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~  330 (860)
                                                                      ...                             
T Consensus       128 ------------------------------------------------~~~-----------------------------  130 (357)
T 4g56_B          128 ------------------------------------------------LLV-----------------------------  130 (357)
T ss_dssp             -------------------------------------------------CC-----------------------------
T ss_pred             ------------------------------------------------eEE-----------------------------
Confidence                                                            000                             


Q ss_pred             EEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCC-EEEEE
Q 038577          331 LLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNH-SLLSA  409 (860)
Q Consensus       331 i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~  409 (860)
                                ......+|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|++++. .++++
T Consensus       131 ----------~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~  200 (357)
T 4g56_B          131 ----------NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSC  200 (357)
T ss_dssp             ----------CCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEE
T ss_pred             ----------EeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeee
Confidence                      0011246888999999999999999999999999999999999999999999999999999874 78999


Q ss_pred             eCCCcEEEEEccccceeeEeeC-CCCCcEEEEEECCCC-CEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcC
Q 038577          410 SLDGTVRAWDLFRYRNFRTFTT-PSSRQFVSLASDQSG-EVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSP  487 (860)
Q Consensus       410 ~~dg~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~  487 (860)
                      +.||.|++||+++++....+.. .....+.+++|+|++ .++++++.++ .|++||+++++.+..+.+|...|++++|+|
T Consensus       201 ~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~-~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp  279 (357)
T 4g56_B          201 GEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG-NVSLVNIKNPDSAQTSAVHSQNITGLAYSY  279 (357)
T ss_dssp             ETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS-CEEEEESSCGGGCEEECCCSSCEEEEEECS
T ss_pred             ccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccc-ceeEEECCCCcEeEEEeccceeEEEEEEcC
Confidence            9999999999999887766653 345578999999985 6788888888 999999999999999999999999999999


Q ss_pred             CC-CEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEee-CCCEEEEEeCCCeEEEEeCCCCce
Q 038577          488 TN-ATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRP-DGRQLACSTLDGQIHFWDPLNGEL  553 (860)
Q Consensus       488 ~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~  553 (860)
                      ++ ++|++++.|++|++||+.+++ +....+|...|++++|+| ++++|++++.||+|++|++.+...
T Consensus       280 ~~~~~lasgs~D~~i~iwd~~~~~-~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~  346 (357)
T 4g56_B          280 HSSPFLASISEDCTVAVLDADFSE-VFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR  346 (357)
T ss_dssp             SSSCCEEEEETTSCEEEECTTSCE-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCc-EeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence            87 579999999999999999887 556678999999999998 899999999999999999976433

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.7e-39  Score=339.35  Aligned_cols=296  Identities=25%  Similarity=0.388  Sum_probs=262.5

Q ss_pred             EEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEE
Q 038577          133 LIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTI  212 (860)
Q Consensus       133 ~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~  212 (860)
                      ....+.+|.+.|.+++|+||+++|++++.||+|++||..+.      .....+..|...|.+++|+|++.     .++++
T Consensus        56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~------~~~~~~~~~~~~v~~~~~sp~g~-----~lasg  124 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT------NKEHAVTMPCTWVMACAYAPSGC-----AIACG  124 (354)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC------CEEEEEECSSSCCCEEEECTTSS-----EEEEE
T ss_pred             EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC------CcceEEecCCCCEEEEEECCCCC-----EEEEe
Confidence            56789999999999999999999999999999999998877      56677888999999999999999     99999


Q ss_pred             cCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEE
Q 038577          213 ARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQ  292 (860)
Q Consensus       213 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~  292 (860)
                      +.|+.+++|++......                                                               
T Consensus       125 ~~d~~i~v~~~~~~~~~---------------------------------------------------------------  141 (354)
T 2pbi_B          125 GLDNKCSVYPLTFDKNE---------------------------------------------------------------  141 (354)
T ss_dssp             STTSEEEEEECCCCTTC---------------------------------------------------------------
T ss_pred             eCCCCEEEEEEeccccc---------------------------------------------------------------
Confidence            99999999987653210                                                               


Q ss_pred             CCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcC--CCCEEEEEeCC
Q 038577          293 MPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSP--DSQLLATGADD  370 (860)
Q Consensus       293 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d  370 (860)
                       ........+..|...+.+++|+|++..+++++.+ +.|++||+++++.+..+.+|...|.+++++|  +++.|++|+.|
T Consensus       142 -~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D-~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~D  219 (354)
T 2pbi_B          142 -NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGD-GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCD  219 (354)
T ss_dssp             -CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETT-SEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETT
T ss_pred             -cccccceeeeccCCcEEEEEEeCCCCEEEEEeCC-CcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCC
Confidence             0001122334567788888899888888887766 9999999999999999999999999999988  57899999999


Q ss_pred             CcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCC-CCcEEEEEECCCCCEE
Q 038577          371 NKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPS-SRQFVSLASDQSGEVI  449 (860)
Q Consensus       371 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l  449 (860)
                      |.|++||+++++++..+..|...|.+++|+|++..|++++.|++|++||+++.+....+.... ...+.+++|+|++.++
T Consensus       220 g~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l  299 (354)
T 2pbi_B          220 KKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLL  299 (354)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred             CeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEE
Confidence            999999999999999999999999999999999999999999999999999887766665432 3468899999999999


Q ss_pred             EEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038577          450 CAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN  505 (860)
Q Consensus       450 ~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  505 (860)
                      ++++.|+ .|++||+.+++.+..+.+|.+.|++++|+|++++|++++.||+|++|+
T Consensus       300 ~~g~~d~-~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          300 FAGYNDY-TINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEETTS-CEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEECCC-cEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            9999998 999999999999999999999999999999999999999999999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.9e-39  Score=338.93  Aligned_cols=290  Identities=23%  Similarity=0.324  Sum_probs=262.5

Q ss_pred             eeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038577          297 VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVW  376 (860)
Q Consensus       297 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  376 (860)
                      +....+.+|...|.+++|+|+++.+++++.+ |.|++||..++.....+..|...|.+++|+|+|..+++|+.|+.+++|
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~D-g~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~  133 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQD-GKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY  133 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETT-SEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCC-CeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence            4567788999999999999999999988766 999999999999888888899999999999999999999999999999


Q ss_pred             ECCCC------eeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECC--CCCE
Q 038577          377 TVSSG------FCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQ--SGEV  448 (860)
Q Consensus       377 d~~~~------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  448 (860)
                      ++...      .....+..|...|.+++|+|++..|++++.|++|++||+.+++....+..+ ...+.++.++|  ++.+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~g~~  212 (354)
T 2pbi_B          134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGH-GADVLCLDLAPSETGNT  212 (354)
T ss_dssp             ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECCCSSCCE
T ss_pred             EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCC-CCCeEEEEEEeCCCCCE
Confidence            98643      345667789999999999999999999999999999999999988887754 45788888877  5789


Q ss_pred             EEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcc--cCCCeEEEE
Q 038577          449 ICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFP--HTHDVLTVV  526 (860)
Q Consensus       449 l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~  526 (860)
                      +++++.|+ .|++||+++++.+..+.+|...|.+++|+|++.+|++++.|++|++||+...+.......  +...+.+++
T Consensus       213 l~sgs~Dg-~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~  291 (354)
T 2pbi_B          213 FVSGGCDK-KAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVD  291 (354)
T ss_dssp             EEEEETTS-CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred             EEEEeCCC-eEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEE
Confidence            99999999 999999999999999999999999999999999999999999999999988765444433  345789999


Q ss_pred             EeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEE
Q 038577          527 YRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYIC  606 (860)
Q Consensus       527 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~  606 (860)
                      |+|++++|++++.|+.|++||+.+++.+..+.+|..                    .|++++|+|||++|++++.||.|+
T Consensus       292 ~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~--------------------~v~~l~~spdg~~l~sgs~D~~v~  351 (354)
T 2pbi_B          292 FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN--------------------RVSTLRVSPDGTAFCSGSWDHTLR  351 (354)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS--------------------CEEEEEECTTSSCEEEEETTSEEE
T ss_pred             EeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC--------------------cEEEEEECCCCCEEEEEcCCCCEE
Confidence            999999999999999999999999999999888875                    599999999999999999999999


Q ss_pred             EEE
Q 038577          607 MYD  609 (860)
Q Consensus       607 vwd  609 (860)
                      +|+
T Consensus       352 vW~  354 (354)
T 2pbi_B          352 VWA  354 (354)
T ss_dssp             EEC
T ss_pred             ecC
Confidence            996

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.7e-40  Score=353.88  Aligned_cols=326  Identities=15%  Similarity=0.256  Sum_probs=288.1

Q ss_pred             CCCCceEEEEecCCCC-EEEEEEcCCeEEEEEC----CCce------eEEEEee----------cCceeEEEEEeeCCCE
Q 038577          262 QAPSKVTACDYHRGLD-MVVVGFSNGVFGLYQM----PDFV------CIHLLSI----------SREKITTAVFNELGNW  320 (860)
Q Consensus       262 ~~~~~v~~~~~~~~~~-~l~~~~~~g~i~~~~~----~~~~------~~~~~~~----------~~~~i~~~~~s~~~~~  320 (860)
                      .|...|.+++|+|+++ +|++|+.||.|++|++    .+++      ....+..          +...|.+++|+|++++
T Consensus        43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  122 (425)
T 1r5m_A           43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS  122 (425)
T ss_dssp             EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred             eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence            3457899999999999 9999999999999999    8887      4555554          5679999999999999


Q ss_pred             EEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCc-------
Q 038577          321 LVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNA-------  393 (860)
Q Consensus       321 l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------  393 (860)
                      +++++.+ |.|++|| .++.....+..|...|.+++|+|++++|++++.||.|++||+.+++.+..+..+...       
T Consensus       123 l~~~~~d-g~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  200 (425)
T 1r5m_A          123 IVTGVEN-GELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE  200 (425)
T ss_dssp             EEEEETT-SCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----------
T ss_pred             EEEEeCC-CeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec
Confidence            9998876 9999999 677788888899999999999999999999999999999999999999998888777       


Q ss_pred             --------eEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECC
Q 038577          394 --------VTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK  465 (860)
Q Consensus       394 --------v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~  465 (860)
                              +.+++|++++ .+++++.||.|++||+.+++....+. .+...+.+++++|+++++++++.++ .|++||+.
T Consensus       201 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~-~i~i~d~~  277 (425)
T 1r5m_A          201 NHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLI-GHHGPISVLEFNDTNKLLLSASDDG-TLRIWHGG  277 (425)
T ss_dssp             -----CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEEC-CCSSCEEEEEEETTTTEEEEEETTS-CEEEECSS
T ss_pred             cccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeec-cCCCceEEEEECCCCCEEEEEcCCC-EEEEEECC
Confidence                    9999999986 68899999999999999988777765 3456899999999999999999998 99999999


Q ss_pred             CCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEE
Q 038577          466 TGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHF  545 (860)
Q Consensus       466 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  545 (860)
                      +++.+..+.+|...|.+++|+|++ ++++++.||.|++||+.+++.......|...+.+++|+|++++|++++.||.|++
T Consensus       278 ~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  356 (425)
T 1r5m_A          278 NGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNV  356 (425)
T ss_dssp             SBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             CCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEE
Confidence            999999999999999999999999 9999999999999999999877778889999999999999999999999999999


Q ss_pred             EeCCCCc--------------------eeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeE
Q 038577          546 WDPLNGE--------------------LMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYI  605 (860)
Q Consensus       546 wd~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v  605 (860)
                      ||+.+++                    .+..+.+|..                  +..|++++|+|++++|++++.||.|
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~v~~~~~s~~~~~l~~~~~dg~i  418 (425)
T 1r5m_A          357 YDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQD------------------NDYIFDLSWNCAGNKISVAYSLQEG  418 (425)
T ss_dssp             EECHHHHC--------------CEECCEEEEECCTTC------------------CCCEEEEEECTTSSEEEEEESSSCC
T ss_pred             EECCCCccceeeeecccccccCcccchhhhhhcCccc------------------CCceEEEEccCCCceEEEEecCceE
Confidence            9999887                    5666665532                  0159999999999999999999999


Q ss_pred             EEEECC
Q 038577          606 CMYDVA  611 (860)
Q Consensus       606 ~vwd~~  611 (860)
                      ++||++
T Consensus       419 ~iw~~~  424 (425)
T 1r5m_A          419 SVVAIP  424 (425)
T ss_dssp             EEEECC
T ss_pred             EEEeec
Confidence            999986

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.5e-41  Score=355.58  Aligned_cols=313  Identities=17%  Similarity=0.271  Sum_probs=268.9

Q ss_pred             CCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee-cCCceeEEEECCCCCEEE
Q 038577           31 GNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-FKYPVNAILFSPNGKYIA  109 (860)
Q Consensus        31 ~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~fspdg~~la  109 (860)
                      +..+..|+..+......+.+|.+.|++++|+|+|++||+++.|++|+|||+.+++.+..+. |...|.+++|+|+|++||
T Consensus        45 ~~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~la  124 (380)
T 3iz6_a           45 GRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVA  124 (380)
T ss_dssp             GGGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEE
T ss_pred             cccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEE
Confidence            4456678888888888888999999999999999999999999999999999999998888 889999999999999999


Q ss_pred             EE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCC-CeEEEeecCCeEEEEeecccccCcccccceEe--
Q 038577          110 VG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDS-NYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLL--  185 (860)
Q Consensus       110 ~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~--  185 (860)
                      ++ .|+.+++|++.+.............+.+|.+.|.+++|+|++ ..|++++.|++|++||+.++      .....+  
T Consensus       125 s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~------~~~~~~~~  198 (380)
T 3iz6_a          125 CGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG------QRISIFGS  198 (380)
T ss_dssp             ECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTC------CEEEEECC
T ss_pred             EeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCC------cEEEEeec
Confidence            99 899999999976432111111345678999999999999975 57999999999999999987      334444  


Q ss_pred             ---ecCCCcEEEEEEcc-CCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecccc
Q 038577          186 ---LGHRDSVVGCFFSV-DKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFS  261 (860)
Q Consensus       186 ---~~h~~~i~~~~~~~-~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (860)
                         .+|...|.++.|++ ++.     .+++++.|++|++||+.....                           ....+.
T Consensus       199 ~~~~~h~~~v~~~~~~~~~~~-----~l~sgs~D~~v~~wd~~~~~~---------------------------~~~~~~  246 (380)
T 3iz6_a          199 EFPSGHTADVLSLSINSLNAN-----MFISGSCDTTVRLWDLRITSR---------------------------AVRTYH  246 (380)
T ss_dssp             CSSSSCCSCEEEEEECSSSCC-----EEEEEETTSCEEEEETTTTCC---------------------------CCEEEC
T ss_pred             ccCCCCccCeEEEEeecCCCC-----EEEEEECCCeEEEEECCCCCc---------------------------ceEEEC
Confidence               68999999999977 666     999999999999999874211                           123456


Q ss_pred             CCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCc-------eeEEEEEeeCCCEEEEEEccCCcEEEE
Q 038577          262 QAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISRE-------KITTAVFNELGNWLVFGCAKLGQLLVW  334 (860)
Q Consensus       262 ~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~-------~i~~~~~s~~~~~l~~~~~~~g~i~v~  334 (860)
                      +|...|.+++|+|++++|++|+.||.|++||+.+++.+..+..+..       .+.+++|+|+|+++++++.+ |.|++|
T Consensus       247 ~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-g~i~vw  325 (380)
T 3iz6_a          247 GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN-GDCYVW  325 (380)
T ss_dssp             CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT-SCEEEE
T ss_pred             CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECC-CCEEEE
Confidence            7888999999999999999999999999999999998887765432       38999999999999988765 999999


Q ss_pred             EccCceEEEEe----cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 038577          335 EWRSESYILKQ----QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGF  382 (860)
Q Consensus       335 d~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  382 (860)
                      |...++....+    .+|...|.+++|+|+|.+|++|+.||.|++|++...+
T Consensus       326 d~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          326 DTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             ETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             ECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            99998888776    6799999999999999999999999999999987543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.4e-40  Score=339.65  Aligned_cols=304  Identities=15%  Similarity=0.124  Sum_probs=239.6

Q ss_pred             EEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcc------------cCeEEEEeecCCceeEEEE
Q 038577           34 VSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLH------------CHVVLHRVRFKYPVNAILF  101 (860)
Q Consensus        34 i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~------------~~~~~~~~~~~~~v~~~~f  101 (860)
                      .+.|++.....    ..|...|.+++|||||++|++++ |+++++||..            .+.......+...|.+++|
T Consensus        16 ~r~w~~~~~~~----~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   90 (344)
T 4gqb_B           16 AREWNLPPNAP----ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTW   90 (344)
T ss_dssp             -------CCSC----SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEE
T ss_pred             ccccCCCCCCc----ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEE
Confidence            45677655432    35777899999999999999887 6777777632            1223334456788999999


Q ss_pred             CCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCccccc
Q 038577          102 SPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNK  181 (860)
Q Consensus       102 spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~  181 (860)
                      +||+.+++.+.|+.|+|||+.+++..   ......+.+|.+.|++++|+|||++|++|+.|++|++||+.++      ..
T Consensus        91 s~d~~l~~~s~dg~v~lWd~~~~~~~---~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~------~~  161 (344)
T 4gqb_B           91 VGERGILVASDSGAVELWELDENETL---IVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ------VV  161 (344)
T ss_dssp             ETTTEEEEEETTSEEEEEEECTTSSC---EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------EE
T ss_pred             eCCCeEEEEECCCEEEEEeccCCCce---eEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC------cE
Confidence            99987666668999999999988642   1223456689999999999999999999999999999999988      67


Q ss_pred             ceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecccc
Q 038577          182 PFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFS  261 (860)
Q Consensus       182 ~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (860)
                      ...+.+|.+.|.+++|++++..    .+++++.|++|++||+.++..                          .......
T Consensus       162 ~~~~~~h~~~V~~~~~~~~~~~----~l~s~s~D~~v~iwd~~~~~~--------------------------~~~~~~~  211 (344)
T 4gqb_B          162 LSSYRAHAAQVTCVAASPHKDS----VFLSCSEDNRILLWDTRCPKP--------------------------ASQIGCS  211 (344)
T ss_dssp             EEEECCCSSCEEEEEECSSCTT----EEEEEETTSCEEEEETTSSSC--------------------------EEECC--
T ss_pred             EEEEcCcCCceEEEEecCCCCC----ceeeeccccccccccccccce--------------------------eeeeecc
Confidence            8899999999999999999853    689999999999999987543                          1111223


Q ss_pred             CCCCceEEEEecCC-CCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce
Q 038577          262 QAPSKVTACDYHRG-LDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES  340 (860)
Q Consensus       262 ~~~~~v~~~~~~~~-~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~  340 (860)
                      .+...+.+++|+|+ ++++++|+.||.|++||+.+++.+..+..|...|.+++|+|++..++++++.|+.|++||..+++
T Consensus       212 ~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~  291 (344)
T 4gqb_B          212 APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE  291 (344)
T ss_dssp             --CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE
T ss_pred             eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc
Confidence            45567899999995 56788999999999999999999999999999999999999996544444455999999999887


Q ss_pred             EEEEecCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCe
Q 038577          341 YILKQQGHYFDVNCLAYSPDSQ-LLATGADDNKVKVWTVSSGF  382 (860)
Q Consensus       341 ~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~  382 (860)
                      .. .+.+|...|++++|+|++. +|++++.||+|++|++.+..
T Consensus       292 ~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          292 LF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             EE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             EE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            65 5689999999999999986 57789999999999997653

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.5e-40  Score=351.48  Aligned_cols=309  Identities=22%  Similarity=0.359  Sum_probs=268.2

Q ss_pred             EEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEE
Q 038577          288 FGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATG  367 (860)
Q Consensus       288 i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  367 (860)
                      +..|+..+..+...+.+|.+.|.+++|+|+++++++++.+ |.|++||..+++....+..|...|.+++|+|+|+++++|
T Consensus        48 ~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D-~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~  126 (380)
T 3iz6_a           48 AVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQD-GRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACG  126 (380)
T ss_dssp             CCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETT-SEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEEC
T ss_pred             ccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCC-CeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEe
Confidence            3446666777888999999999999999999999988876 999999999999999999999999999999999999999


Q ss_pred             eCCCcEEEEECCCCe-------eEEEeecCCCceEEEEEeeCC-CEEEEEeCCCcEEEEEccccceeeEee----CCCCC
Q 038577          368 ADDNKVKVWTVSSGF-------CFVTFTEHTNAVTALHFMANN-HSLLSASLDGTVRAWDLFRYRNFRTFT----TPSSR  435 (860)
Q Consensus       368 ~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~----~~~~~  435 (860)
                      +.|+.+++|++.+..       ....+.+|.+.|.++.|.|++ ..|++++.|++|++||+.+++....+.    ..+..
T Consensus       127 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~  206 (380)
T 3iz6_a          127 GLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA  206 (380)
T ss_dssp             CSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS
T ss_pred             eCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc
Confidence            999999999987532       344677899999999999974 579999999999999999998887663    34556


Q ss_pred             cEEEEEECC-CCCEEEEEecCCCeEEEEECC-CCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCccee
Q 038577          436 QFVSLASDQ-SGEVICAGTLDSFEIFVWSMK-TGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSV  513 (860)
Q Consensus       436 ~~~~~~~~~-~~~~l~~~~~~~~~i~v~d~~-~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~  513 (860)
                      .+.++++++ ++.++++++.|+ .|++||++ .++.+..+.+|.+.|.+++|+|++++|++++.||+|++||+.++....
T Consensus       207 ~v~~~~~~~~~~~~l~sgs~D~-~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~  285 (380)
T 3iz6_a          207 DVLSLSINSLNANMFISGSCDT-TVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ  285 (380)
T ss_dssp             CEEEEEECSSSCCEEEEEETTS-CEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEE
T ss_pred             CeEEEEeecCCCCEEEEEECCC-eEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEE
Confidence            789999976 889999999999 99999998 567888999999999999999999999999999999999999987655


Q ss_pred             EEccc-------CCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEE
Q 038577          514 ESFPH-------THDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTT  586 (860)
Q Consensus       514 ~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  586 (860)
                      .+..+       ...+++++|+|+|++|++|+.||.|++||+.+++.+..+....                ..|...|++
T Consensus       286 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~----------------~~h~~~v~~  349 (380)
T 3iz6_a          286 VYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQ----------------NSHEGRISC  349 (380)
T ss_dssp             EECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSC----------------SSCCCCCCE
T ss_pred             EecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEeccc----------------CCCCCceEE
Confidence            54432       2348999999999999999999999999999998887763211                112346999


Q ss_pred             EEEecCCCEEEEecCCCeEEEEECCCce
Q 038577          587 LCYSADGSYILAGGSSKYICMYDVADQV  614 (860)
Q Consensus       587 l~~s~~g~~l~~~~~dg~v~vwd~~~~~  614 (860)
                      ++|+|||++|++|+.||+|++|++...+
T Consensus       350 l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          350 LGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             EEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             EEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            9999999999999999999999998653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.6e-39  Score=337.09  Aligned_cols=304  Identities=20%  Similarity=0.293  Sum_probs=249.6

Q ss_pred             EEeeccCCcc-CeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEE--e--ecCCceeEEEECCCCCEEEEE-eCCeEE
Q 038577           44 TVTLPVESSS-NICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHR--V--RFKYPVNAILFSPNGKYIAVG-TGKLVQ  117 (860)
Q Consensus        44 ~~~~~~~h~~-~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~--~--~~~~~v~~~~fspdg~~la~~-~~~~i~  117 (860)
                      .+..+.+|.. .|.+++|||+|++||+++.|++|+|||+.++.....  +  .|...|.+++|+|+|++||++ .|+.++
T Consensus         7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~   86 (345)
T 3fm0_A            7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTC   86 (345)
T ss_dssp             EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEE
Confidence            4555668987 899999999999999999999999999998865432  2  288999999999999999999 789999


Q ss_pred             EEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEE
Q 038577          118 IWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFF  197 (860)
Q Consensus       118 iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~  197 (860)
                      +|+...+.     ..+...+.+|.+.|.+++|+|++++|++++.|+.|++||+......   .....+.+|...|.+++|
T Consensus        87 iw~~~~~~-----~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~---~~~~~~~~h~~~v~~~~~  158 (345)
T 3fm0_A           87 IWKKNQDD-----FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEY---ECVSVLNSHTQDVKHVVW  158 (345)
T ss_dssp             EEEECCC------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCE---EEEEEECCCCSCEEEEEE
T ss_pred             EEEccCCC-----eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCe---EEEEEecCcCCCeEEEEE
Confidence            99988764     2256788999999999999999999999999999999999876111   335677899999999999


Q ss_pred             ccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCC
Q 038577          198 SVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLD  277 (860)
Q Consensus       198 ~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  277 (860)
                      +|++.     +|++++.|++|++|+...+.                        |.  ....+.+|...|.+++|+|+++
T Consensus       159 ~p~~~-----~l~s~s~d~~i~~w~~~~~~------------------------~~--~~~~~~~h~~~v~~l~~sp~g~  207 (345)
T 3fm0_A          159 HPSQE-----LLASASYDDTVKLYREEEDD------------------------WV--CCATLEGHESTVWSLAFDPSGQ  207 (345)
T ss_dssp             CSSSS-----CEEEEETTSCEEEEEEETTE------------------------EE--EEEEECCCSSCEEEEEECTTSS
T ss_pred             CCCCC-----EEEEEeCCCcEEEEEecCCC------------------------EE--EEEEecCCCCceEEEEECCCCC
Confidence            99999     99999999999999987642                        11  1234567889999999999999


Q ss_pred             EEEEEEcCCeEEEEECCC---------------ceeEEEEee-cCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce-
Q 038577          278 MVVVGFSNGVFGLYQMPD---------------FVCIHLLSI-SREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES-  340 (860)
Q Consensus       278 ~l~~~~~~g~i~~~~~~~---------------~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~-  340 (860)
                      +|++++.||.|++|+...               ..++..+.. |...|.+++|+|++..+++++.+ +.+++|+...+. 
T Consensus       208 ~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-~~i~vw~~~~~~~  286 (345)
T 3fm0_A          208 RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGD-DAIRVFQEDPNSD  286 (345)
T ss_dssp             EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETT-SCEEEEEECTTSC
T ss_pred             EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCC-CeEEEEEeCCCCC
Confidence            999999999999998521               133444444 67789999999999999998876 999999987542 


Q ss_pred             -------E-EEEecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEe
Q 038577          341 -------Y-ILKQQGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSSGFCFVTF  387 (860)
Q Consensus       341 -------~-~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~  387 (860)
                             . .....+|...|.+++|+|++ .+|++|+.||.|++|++.+++.....
T Consensus       287 ~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~  342 (345)
T 3fm0_A          287 PQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH  342 (345)
T ss_dssp             TTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred             cceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence                   1 12235799999999999998 49999999999999999887765443

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=7.4e-39  Score=329.52  Aligned_cols=299  Identities=18%  Similarity=0.263  Sum_probs=255.2

Q ss_pred             eeEEEEeecCceeEEEEEeeCC-CEEEEEEccCCcEEEEEccC-----ceEEEEecCcccCeEEEEEcCCCCEEEEEeCC
Q 038577          297 VCIHLLSISREKITTAVFNELG-NWLVFGCAKLGQLLVWEWRS-----ESYILKQQGHYFDVNCLAYSPDSQLLATGADD  370 (860)
Q Consensus       297 ~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~g~i~v~d~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  370 (860)
                      ....++.+|.+.|.+++|+|++ +.+++++. |+.|++|++..     +..+..+.+|...|.+++|+|+++++++|+.|
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~-D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D   86 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASR-DKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD   86 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEET-TSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEEccccceEEEEEccCCCccEEEEecC-CccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence            4456788999999999999977 56666655 59999999864     34566778999999999999999999999999


Q ss_pred             CcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCC-----
Q 038577          371 NKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQS-----  445 (860)
Q Consensus       371 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-----  445 (860)
                      ++|++||+.+++.+..+.+|...|.+++|+|++.++++++.|+.|++||+.. +....+. .+...+.++.+.|.     
T Consensus        87 ~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~-~h~~~v~~~~~~~~~~~~~  164 (319)
T 3frx_A           87 KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLL-GHNDWVSQVRVVPNEKADD  164 (319)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEEC-CCSSCEEEEEECCC-----
T ss_pred             CEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEe-ccCCcEEEEEEccCCCCCC
Confidence            9999999999999999999999999999999999999999999999999964 4444443 34567899999885     


Q ss_pred             -CCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEE
Q 038577          446 -GEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLT  524 (860)
Q Consensus       446 -~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  524 (860)
                       +..+++++.|+ .|++||+++++....+.+|..+|.+++|+|++++|++++.||.|++||+.+++....+. +...+.+
T Consensus       165 ~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~  242 (319)
T 3frx_A          165 DSVTIISAGNDK-MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS-AQDEVFS  242 (319)
T ss_dssp             -CCEEEEEETTS-CEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE-CCSCEEE
T ss_pred             CccEEEEEeCCC-EEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEE
Confidence             45899999998 99999999999999999999999999999999999999999999999999987555544 5578999


Q ss_pred             EEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCe
Q 038577          525 VVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKY  604 (860)
Q Consensus       525 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~  604 (860)
                      ++|+|++.+|++++.+ .+++|++..+..+..+..+...            ....+...+.+++|+|||++|++|+.||.
T Consensus       243 ~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~------------~~~~~~~~v~~~~~spdg~~l~sg~~Dg~  309 (319)
T 3frx_A          243 LAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAG------------YSKAAEPHAVSLAWSADGQTLFAGYTDNV  309 (319)
T ss_dssp             EEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTT------------CCGGGCCCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccc------------cccCcCcceeEEEECCCCCEEEEeecCce
Confidence            9999999999998855 5999999988777766543211            00112335899999999999999999999


Q ss_pred             EEEEECCCc
Q 038577          605 ICMYDVADQ  613 (860)
Q Consensus       605 v~vwd~~~~  613 (860)
                      |++||+.++
T Consensus       310 i~vWd~~t~  318 (319)
T 3frx_A          310 IRVWQVMTA  318 (319)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEeec
Confidence            999999764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2e-39  Score=335.44  Aligned_cols=287  Identities=17%  Similarity=0.157  Sum_probs=238.4

Q ss_pred             CCCCceEEEEecCCCCEEEEEEcCCeEEEEECC-----------CceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCc
Q 038577          262 QAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMP-----------DFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQ  330 (860)
Q Consensus       262 ~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~-----------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~  330 (860)
                      .+...|.+++|+|||++|++++ ++.+++||..           ..........+...|.+++|+|++ .+++++. ||.
T Consensus        28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~-dg~  104 (344)
T 4gqb_B           28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASD-SGA  104 (344)
T ss_dssp             SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEET-TSE
T ss_pred             cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEEC-CCE
Confidence            4566799999999999888776 6667777521           111112223345679999999985 5666655 499


Q ss_pred             EEEEEccCceEEE----EecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCC-CE
Q 038577          331 LLVWEWRSESYIL----KQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANN-HS  405 (860)
Q Consensus       331 i~v~d~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~  405 (860)
                      |++||+.+++...    ...+|...|++++|+|+|++|++|+.|++|++||+.+++++..+.+|...|.+++|++++ ..
T Consensus       105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  184 (344)
T 4gqb_B          105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV  184 (344)
T ss_dssp             EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred             EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence            9999999876433    335899999999999999999999999999999999999999999999999999999988 47


Q ss_pred             EEEEeCCCcEEEEEccccceeeEeeCC-CCCcEEEEEECCC-CCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEE
Q 038577          406 LLSASLDGTVRAWDLFRYRNFRTFTTP-SSRQFVSLASDQS-GEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGL  483 (860)
Q Consensus       406 l~s~~~dg~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l  483 (860)
                      +++++.|+.|++||+++++....+... ....+.+++++|+ ++++++|+.|+ .|++||+++++.+..+.+|...|+++
T Consensus       185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg-~v~~wd~~~~~~~~~~~~h~~~v~~v  263 (344)
T 4gqb_B          185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG-TVSLVDTKSTSCVLSSAVHSQCVTGL  263 (344)
T ss_dssp             EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS-EEEEEESCC--CCEEEECCSSCEEEE
T ss_pred             eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC-cEEEEECCCCcEEEEEcCCCCCEEEE
Confidence            899999999999999999888777543 3446889999985 56788888888 99999999999999999999999999


Q ss_pred             EEcCCC-CEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCC-EEEEEeCCCeEEEEeCCCCce
Q 038577          484 VFSPTN-ATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGR-QLACSTLDGQIHFWDPLNGEL  553 (860)
Q Consensus       484 ~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~  553 (860)
                      +|+|++ ++|++++.|++|++||+.+++ +....+|...|++++|+|+++ +|++++.||+|++|++.+...
T Consensus       264 ~fsp~g~~~lasgs~D~~i~vwd~~~~~-~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          264 VFSPHSVPFLASLSEDCSLAVLDSSLSE-LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             EECSSSSCCEEEEETTSCEEEECTTCCE-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred             EEccCCCeEEEEEeCCCeEEEEECCCCc-EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence            999998 579999999999999998886 566789999999999999986 677999999999999987543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=9.7e-39  Score=332.71  Aligned_cols=305  Identities=23%  Similarity=0.324  Sum_probs=239.0

Q ss_pred             eEEEEEeeccCC-CeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceE
Q 038577          131 FELIRTLADCND-KVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRI  209 (860)
Q Consensus       131 ~~~~~~~~~h~~-~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l  209 (860)
                      ..++..+.+|.+ .|.+++|+|+|++||+++.|+.|++||+..+ ...  .......+|...|.+++|+|+++     +|
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~-~~~--~~~~~~~~h~~~v~~~~~sp~g~-----~l   76 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGD-SWI--CKSVLSEGHQRTVRKVAWSPCGN-----YL   76 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETT-EEE--EEEEECSSCSSCEEEEEECTTSS-----EE
T ss_pred             EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCC-cce--eeeeeccccCCcEEEEEECCCCC-----EE
Confidence            446788999988 9999999999999999999999999999876 110  11223367999999999999988     89


Q ss_pred             EEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEE
Q 038577          210 YTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFG  289 (860)
Q Consensus       210 ~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~  289 (860)
                      ++++.|+++++|+...+..                                                             
T Consensus        77 ~s~s~D~~v~iw~~~~~~~-------------------------------------------------------------   95 (345)
T 3fm0_A           77 ASASFDATTCIWKKNQDDF-------------------------------------------------------------   95 (345)
T ss_dssp             EEEETTSCEEEEEECCC-E-------------------------------------------------------------
T ss_pred             EEEECCCcEEEEEccCCCe-------------------------------------------------------------
Confidence            9999999999998765210                                                             


Q ss_pred             EEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc---eEEEEecCcccCeEEEEEcCCCCEEEE
Q 038577          290 LYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE---SYILKQQGHYFDVNCLAYSPDSQLLAT  366 (860)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~  366 (860)
                             +.+..+..|...|.+++|+|+++.+++++.+ +.|++||+.++   ..+..+.+|...|.+++|+|++++|++
T Consensus        96 -------~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D-~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s  167 (345)
T 3fm0_A           96 -------ECVTTLEGHENEVKSVAWAPSGNLLATCSRD-KSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLAS  167 (345)
T ss_dssp             -------EEEEEECCCSSCEEEEEECTTSSEEEEEETT-SCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEE
T ss_pred             -------EEEEEccCCCCCceEEEEeCCCCEEEEEECC-CeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEE
Confidence                   1223334455556666666666666555544 66777776554   345566789999999999999999999


Q ss_pred             EeCCCcEEEEECCCCe--eEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcccc---------------ceeeEe
Q 038577          367 GADDNKVKVWTVSSGF--CFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRY---------------RNFRTF  429 (860)
Q Consensus       367 ~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~---------------~~~~~~  429 (860)
                      ++.|+.|++||..++.  +...+.+|...|.+++|+|++++|++++.|++|++|+....               +++..+
T Consensus       168 ~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (345)
T 3fm0_A          168 ASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL  247 (345)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEE
T ss_pred             EeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEe
Confidence            9999999999998775  45688899999999999999999999999999999997432               223344


Q ss_pred             eCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCc---------eEEEecCcccCeEEEEEcCCC-CEEEEEeCCC
Q 038577          430 TTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGR---------LLDILSGHEGPVHGLVFSPTN-ATLASSSWDK  499 (860)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~---------~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg  499 (860)
                      ...+...+.+++++|++..+++++.|+ .|++|+...+.         ......+|...|++++|+|++ .+||+++.||
T Consensus       248 ~~~h~~~v~~v~~~~~~~~l~s~~~d~-~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg  326 (345)
T 3fm0_A          248 SGFHSRTIYDIAWCQLTGALATACGDD-AIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDG  326 (345)
T ss_dssp             CSSCSSCEEEEEECTTTCCEEEEETTS-CEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTS
T ss_pred             cCCCCCcEEEEEEecCCCEEEEEeCCC-eEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCC
Confidence            444667899999999999999999998 99999987542         122346899999999999998 5999999999


Q ss_pred             cEEEEEccCCccee
Q 038577          500 TVRLWNVFEGKGSV  513 (860)
Q Consensus       500 ~i~iwd~~~~~~~~  513 (860)
                      +|++|++.+.+...
T Consensus       327 ~v~~W~~~~~~~~~  340 (345)
T 3fm0_A          327 EVAFWKYQRPEGLH  340 (345)
T ss_dssp             CEEEEEECC-----
T ss_pred             cEEEEEecCCCCcc
Confidence            99999998876443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=2.5e-37  Score=370.48  Aligned_cols=534  Identities=12%  Similarity=0.068  Sum_probs=395.3

Q ss_pred             CccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEe-----CC--eEEEEeCCC
Q 038577           51 SSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGT-----GK--LVQIWRSPG  123 (860)
Q Consensus        51 h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~-----~~--~i~iwd~~~  123 (860)
                      +...+.+++|||  ++||+++. +.|++|++.+++......|...+.+++|||||++||++.     ++  .|++|++.+
T Consensus        13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~   89 (1045)
T 1k32_A           13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN   89 (1045)
T ss_dssp             CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT
T ss_pred             ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCC
Confidence            456789999996  58888775 789999999998777667999999999999999999883     23  799999988


Q ss_pred             CCcccceeEEEEEeeccCCCe-------EEEEEcCCCCeEEEeecC------CeEEEEeecccccCcccccceEeecCCC
Q 038577          124 FKKEVFAFELIRTLADCNDKV-------TALNWSPDSNYLLVGSKD------LAVRLFYVKEKLKGIHTNKPFLLLGHRD  190 (860)
Q Consensus       124 ~~~~~~~~~~~~~~~~h~~~v-------~~l~~s~d~~~l~s~~~d------g~v~vwd~~~~~~~~~~~~~~~~~~h~~  190 (860)
                      ++        ...+..|...+       ..++|||||+.+++++.+      ..|.+|++.++       ....+..+. 
T Consensus        90 g~--------~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g-------~~~~l~~~~-  153 (1045)
T 1k32_A           90 GE--------IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGI-------NFVPLNLGP-  153 (1045)
T ss_dssp             TE--------EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGT-------EEEECCSCS-
T ss_pred             CC--------eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCC-------CeEEecCCC-
Confidence            75        46788888888       999999999977777644      35777777665       223333332 


Q ss_pred             cEEEEEEccCCCCCccceEEEEcCC------------ccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeec
Q 038577          191 SVVGCFFSVDKKTDKVNRIYTIARD------------CYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKD  258 (860)
Q Consensus       191 ~i~~~~~~~~~~~~~~~~l~s~~~d------------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (860)
                       ...+.|+| |      .+++++.+            ....+|....+ .                           ...
T Consensus       154 -~~~~~~sp-G------~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~-~---------------------------~~~  197 (1045)
T 1k32_A          154 -ATHILFAD-G------RRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-G---------------------------AFK  197 (1045)
T ss_dssp             -CSEEEEET-T------EEEEEESCSCCTTSTTCCSTTCCEEEEEEET-T---------------------------EEE
T ss_pred             -cceeeeCC-C------EEEEeccCCCccccccccCCCcCCEEEECCC-C---------------------------CeE
Confidence             23566888 4      57776532            23444432221 0                           112


Q ss_pred             cccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCC-ceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc
Q 038577          259 DFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPD-FVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR  337 (860)
Q Consensus       259 ~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~  337 (860)
                      .+..+...+.++.|+++ ..++++..+|.+.+|.+.. +.....+..+. .+...+|+|||+.++++.  ++.|.+|+..
T Consensus       198 ~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~--~~~i~~~d~~  273 (1045)
T 1k32_A          198 KIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK--GGSIYIFNPD  273 (1045)
T ss_dssp             EEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE--TTEEEEECTT
T ss_pred             ECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe--CCEEEEecCC
Confidence            22567888999999998 6666777888888887643 33444444443 466779999999999874  4899999995


Q ss_pred             CceEEEEecC-----------cccCeEEEEEc-CCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCC-ceEEEEEeeCCC
Q 038577          338 SESYILKQQG-----------HYFDVNCLAYS-PDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTN-AVTALHFMANNH  404 (860)
Q Consensus       338 ~~~~~~~~~~-----------~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~i~~~~~~~  404 (860)
                      ..... .+..           |...+.+++|+ |||+.+++++ ++.+.+|+..++... .+..|.. .+..++|+ +++
T Consensus       274 ~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~  349 (1045)
T 1k32_A          274 TEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKV  349 (1045)
T ss_dssp             TCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEE
T ss_pred             ceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCC
Confidence            54433 4444           33468999999 9999999888 789999999877654 4566777 89999999 999


Q ss_pred             EEEEEeCCCcEE-EEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEE
Q 038577          405 SLLSASLDGTVR-AWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGL  483 (860)
Q Consensus       405 ~l~s~~~dg~i~-~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l  483 (860)
                      .++.++.++.+. +|++.+++.. .+. .+...+..++++|+|++|++++.++ .+++||+.+++....+.+|.+.+.++
T Consensus       350 ~l~~~s~~~~l~~~~d~~~~~~~-~l~-~~~~~~~~~~~SpDG~~la~~~~~~-~v~~~d~~tg~~~~~~~~~~~~v~~~  426 (1045)
T 1k32_A          350 AFIHGTREGDFLGIYDYRTGKAE-KFE-ENLGNVFAMGVDRNGKFAVVANDRF-EIMTVDLETGKPTVIERSREAMITDF  426 (1045)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEE-ECC-CCCCSEEEEEECTTSSEEEEEETTS-EEEEEETTTCCEEEEEECSSSCCCCE
T ss_pred             eEEEEECCCceEEEEECCCCCce-Eec-CCccceeeeEECCCCCEEEEECCCC-eEEEEECCCCceEEeccCCCCCccce
Confidence            999998888888 8898776543 333 4556789999999999999999888 99999999999888888899999999


Q ss_pred             EEcCCCCEEEEEeCCC----------cEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCce
Q 038577          484 VFSPTNATLASSSWDK----------TVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGEL  553 (860)
Q Consensus       484 ~~s~~~~~l~s~~~dg----------~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  553 (860)
                      +|||||++|++++.++          .|++||+.+++ ...+..|...+..++|+|||++|++++.++...+|+......
T Consensus       427 ~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~  505 (1045)
T 1k32_A          427 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNF  505 (1045)
T ss_dssp             EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCE
T ss_pred             EECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhcccc
Confidence            9999999999887654          89999999876 666677888899999999999999999988888898664432


Q ss_pred             e-------EEEecccccCCC---------------cccc-ccccccccCCCCcEEEEEEecCCCEEEE------------
Q 038577          554 M-------YTIEGRRDISGG---------------RLMT-DRRSAANSSSGKCFTTLCYSADGSYILA------------  598 (860)
Q Consensus       554 ~-------~~~~~~~~~~~~---------------~~~~-~~~~~~~~~~~~~i~~l~~s~~g~~l~~------------  598 (860)
                      .       ..+....+....               .... .........+...+..++++|||+++++            
T Consensus       506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~  585 (1045)
T 1k32_A          506 SFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQ  585 (1045)
T ss_dssp             ECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHH
T ss_pred             ccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCccccccc
Confidence            1       111111000000               0000 0011112234567899999999998885            


Q ss_pred             -ecCCCeEEEEECCCceEEEEEeecccccccceeeeccCCCCCCCCCCccccCCCCCccccccccccCccccCCCCCCCC
Q 038577          599 -GGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPN  677 (860)
Q Consensus       599 -~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  677 (860)
                       .+....|.+||+.+++... +.                                                         
T Consensus       586 ~~~~~~~l~~~d~~~~~~~~-l~---------------------------------------------------------  607 (1045)
T 1k32_A          586 GAPEKGVLLKYDVKTRKVTE-VK---------------------------------------------------------  607 (1045)
T ss_dssp             CCCCCEEEEEEETTTCCEEE-EE---------------------------------------------------------
T ss_pred             ccCCCceEEEEECCCCcEEE-ee---------------------------------------------------------
Confidence             1234578888988876421 10                                                         


Q ss_pred             CCCCccceeEEEECCCCCeEEEeccccEEEEecCCcc
Q 038577          678 RGRPTIQTKCLKIAPTGRNFVAATTEGVLVYSIDESF  714 (860)
Q Consensus       678 ~~~~~~~~~~~~~spdg~~~~~~~~~g~~i~~~~~~~  714 (860)
                           ..+..+++||||+.+++++.+++.+|+++...
T Consensus       608 -----~~v~~~~~S~DG~~l~~~~~~~i~~~d~~~~~  639 (1045)
T 1k32_A          608 -----NNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP  639 (1045)
T ss_dssp             -----EEEEEEEECTTSCEEEEEETTSCEEEEESSCT
T ss_pred             -----cCcceEEECCCCCEEEEEcCCcEEEEeCccCc
Confidence                 15678899999999999998888899986544

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5e-39  Score=335.82  Aligned_cols=320  Identities=18%  Similarity=0.263  Sum_probs=283.2

Q ss_pred             CCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceE--
Q 038577          264 PSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESY--  341 (860)
Q Consensus       264 ~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~--  341 (860)
                      ...+.+++++|+|+.++++..++.+..|.............|...|.+++|+|+++.+++++  +|.+++||+.++..  
T Consensus         9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~--dg~i~iw~~~~~~~~~   86 (337)
T 1gxr_A            9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG--KGCVKVWDISHPGNKS   86 (337)
T ss_dssp             EEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC--BSEEEEEETTSTTCCS
T ss_pred             CCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC--CCeEEEEECCCCCcee
Confidence            34688999999999999998888877777766666666667889999999999999999887  49999999987642  


Q ss_pred             -EEEe--cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--eEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEE
Q 038577          342 -ILKQ--QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGF--CFVTFTEHTNAVTALHFMANNHSLLSASLDGTVR  416 (860)
Q Consensus       342 -~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~  416 (860)
                       ...+  ..|...|.+++|+|+++++++++.||.|++||+.+++  ....+..|...|.+++|+|+++++++++.||.|+
T Consensus        87 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~  166 (337)
T 1gxr_A           87 PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA  166 (337)
T ss_dssp             CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence             2222  3788999999999999999999999999999999877  6677888999999999999999999999999999


Q ss_pred             EEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEe
Q 038577          417 AWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSS  496 (860)
Q Consensus       417 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~  496 (860)
                      +||+.+++....+.. +...+.+++++|+++++++++.++ .|++||+++++.+..+. |...+.+++|+|+++++++++
T Consensus       167 ~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~  243 (337)
T 1gxr_A          167 VWDLHNQTLVRQFQG-HTDGASCIDISNDGTKLWTGGLDN-TVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM  243 (337)
T ss_dssp             EEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTS-EEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEE
T ss_pred             EEeCCCCceeeeeec-ccCceEEEEECCCCCEEEEEecCC-cEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEc
Confidence            999999888777765 455799999999999999999998 99999999999888775 788999999999999999999


Q ss_pred             CCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCcccccccccc
Q 038577          497 WDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAA  576 (860)
Q Consensus       497 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  576 (860)
                      .|+.|++||+.+++ ......|...+.+++|+|++++|++++.||.|++||+.+++.+......                
T Consensus       244 ~~~~i~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~----------------  306 (337)
T 1gxr_A          244 ESSNVEVLHVNKPD-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES----------------  306 (337)
T ss_dssp             TTSCEEEEETTSSC-EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS----------------
T ss_pred             CCCcEEEEECCCCC-eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCC----------------
Confidence            99999999998886 5567789999999999999999999999999999999999887554432                


Q ss_pred             ccCCCCcEEEEEEecCCCEEEEecCCCeEEEEEC
Q 038577          577 NSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV  610 (860)
Q Consensus       577 ~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~  610 (860)
                           ..+.+++|+|++++|++++.||.|++|++
T Consensus       307 -----~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          307 -----SSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             -----SCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             -----CcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence                 24999999999999999999999999996

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=7e-38  Score=322.24  Aligned_cols=297  Identities=21%  Similarity=0.279  Sum_probs=245.3

Q ss_pred             eEEEEEeeccCCCeEEEEEcCCC-CeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceE
Q 038577          131 FELIRTLADCNDKVTALNWSPDS-NYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRI  209 (860)
Q Consensus       131 ~~~~~~~~~h~~~v~~l~~s~d~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l  209 (860)
                      +.+...+.+|.+.|.+++|+|++ ++|++++.|++|++|++... ..........+.+|...|.+++|+|++        
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~-~~~~~~~~~~~~~h~~~v~~~~~s~dg--------   77 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGD-DQKFGVPVRSFKGHSHIVQDCTLTADG--------   77 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEE-TTEEEEEEEEEECCSSCEEEEEECTTS--------
T ss_pred             EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCC-CccccccceEEeCCcccEEEEEECCCC--------
Confidence            45678899999999999999965 89999999999999998764 110011233445555555555555554        


Q ss_pred             EEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEE
Q 038577          210 YTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFG  289 (860)
Q Consensus       210 ~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~  289 (860)
                                                                                         +++++++.||.|+
T Consensus        78 -------------------------------------------------------------------~~l~s~s~D~~v~   90 (319)
T 3frx_A           78 -------------------------------------------------------------------AYALSASWDKTLR   90 (319)
T ss_dssp             -------------------------------------------------------------------SEEEEEETTSEEE
T ss_pred             -------------------------------------------------------------------CEEEEEeCCCEEE
Confidence                                                                               4555555555555


Q ss_pred             EEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCC------CCE
Q 038577          290 LYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPD------SQL  363 (860)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~------~~~  363 (860)
                      +||+.+++....+..|...|.+++|+|++..+++++.+ +.|++||++. ..+..+.+|...|.+++++|.      +..
T Consensus        91 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D-~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  168 (319)
T 3frx_A           91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD-KTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVT  168 (319)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETT-SCEEEEETTS-CEEEEECCCSSCEEEEEECCC------CCE
T ss_pred             EEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCC-CeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCccE
Confidence            55555666667778888999999999999999988776 9999999974 566677899999999999985      458


Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEEC
Q 038577          364 LATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASD  443 (860)
Q Consensus       364 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  443 (860)
                      +++++.|+.|++||+.+++....+.+|...|.+++|+|++++|++++.||.|++||+.+++....+...  ..+.+++|+
T Consensus       169 l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~s  246 (319)
T 3frx_A          169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFS  246 (319)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC--SCEEEEEEC
T ss_pred             EEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CcEEEEEEc
Confidence            999999999999999999999999999999999999999999999999999999999999988887754  479999999


Q ss_pred             CCCCEEEEEecCCCeEEEEECCCCceEEEec--------CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 038577          444 QSGEVICAGTLDSFEIFVWSMKTGRLLDILS--------GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEG  509 (860)
Q Consensus       444 ~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~--------~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~  509 (860)
                      |++.+++++..+  .+++|++..+..+..+.        .|...+.+++|+|||++|++++.||.|++||+.++
T Consensus       247 p~~~~la~~~~~--~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          247 PNRYWLAAATAT--GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             SSSSEEEEEETT--EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             CCCCEEEEEcCC--CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            999999988765  59999999887776654        34667999999999999999999999999998764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2e-38  Score=330.49  Aligned_cols=305  Identities=18%  Similarity=0.295  Sum_probs=251.9

Q ss_pred             eeEEEEeecCceeEEEEE-----ee-CCCEEEEEEccCCcEEEEEccC-------ceEEEEecCcccCeEEEEEcCCCCE
Q 038577          297 VCIHLLSISREKITTAVF-----NE-LGNWLVFGCAKLGQLLVWEWRS-------ESYILKQQGHYFDVNCLAYSPDSQL  363 (860)
Q Consensus       297 ~~~~~~~~~~~~i~~~~~-----s~-~~~~l~~~~~~~g~i~v~d~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~  363 (860)
                      +....+.+|.+.|.+++|     ++ +++.|++++.+ +.|++||+.+       +.....+.+|...|.+++|+|++.+
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D-~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~   90 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRD-KTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF   90 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETT-SCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCC-CEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence            455678899999999999     66 88888888766 9999999874       3456677899999999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEee-CCCCCcEEEEEE
Q 038577          364 LATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFT-TPSSRQFVSLAS  442 (860)
Q Consensus       364 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~  442 (860)
                      +++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.......... ..+...+.++++
T Consensus        91 l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~  170 (343)
T 2xzm_R           91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRY  170 (343)
T ss_dssp             EEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEE
T ss_pred             EEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeee
Confidence            9999999999999999999999999999999999999999999999999999999997433222111 245567999999


Q ss_pred             CCCC----------CEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcce
Q 038577          443 DQSG----------EVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGS  512 (860)
Q Consensus       443 ~~~~----------~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  512 (860)
                      +|++          .++++++.|+ .|++|| ..++....+.+|...|.+++|+|++++|++++.||.|++||+......
T Consensus       171 ~~~~~~~~~~~~~~~~l~s~~~d~-~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~  248 (343)
T 2xzm_R          171 SPIMKSANKVQPFAPYFASVGWDG-RLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP  248 (343)
T ss_dssp             CCCCCSCSCCCSSCCEEEEEETTS-EEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC
T ss_pred             ccccccccccCCCCCEEEEEcCCC-EEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccc
Confidence            9987          7899999998 999999 456777888999999999999999999999999999999999554444


Q ss_pred             eEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeE--EEecccccCCCccccccccccccCCCCcEEEEEEe
Q 038577          513 VESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMY--TIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYS  590 (860)
Q Consensus       513 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  590 (860)
                      .....+...|.+++|+|++.++++++ |+.|++||+.+++...  .+..+...         .......+...|.+++|+
T Consensus       249 ~~~~~~~~~v~~v~~sp~~~~la~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~v~~~~~s  318 (343)
T 2xzm_R          249 QREFDAGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEPIT---------KAEGQKGKNPQCTSLAWN  318 (343)
T ss_dssp             SEEEECSSCEEEEEECSSSCEEEEEE-SSCEEEEESSSCCSCSEEECCCCSGG---------GBTTBCCSCCCEEEEEEC
T ss_pred             ceeecCCCcEEEEEECCCCCEEEEEC-CCCEEEEEeCCCCCCceEEeecCcch---------hhhhhcCCCCceEEEEEC
Confidence            44445667899999999999887664 7779999998876544  33211100         000112344569999999


Q ss_pred             cCCCEEEEecCCCeEEEEECCCce
Q 038577          591 ADGSYILAGGSSKYICMYDVADQV  614 (860)
Q Consensus       591 ~~g~~l~~~~~dg~v~vwd~~~~~  614 (860)
                      |+|++|++|+.||.|++|+++++.
T Consensus       319 p~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          319 ALGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             SSSCCEEEEETTSEEEEEEEEEEE
T ss_pred             CCCCeEEEecCCceEEEEEEEccC
Confidence            999999999999999999998764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.7e-38  Score=325.49  Aligned_cols=291  Identities=22%  Similarity=0.365  Sum_probs=269.8

Q ss_pred             eccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEc
Q 038577          257 KDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEW  336 (860)
Q Consensus       257 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~  336 (860)
                      ...+.+|...|.+++|+|+++++++++.||.|++|+..+++....+..|...|.+++|+|+++.+++++.+ +.|++||+
T Consensus        16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-~~i~vwd~   94 (312)
T 4ery_A           16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD-KTLKIWDV   94 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT-SEEEEEET
T ss_pred             EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCC-CEEEEEEC
Confidence            44567899999999999999999999999999999999999999999999999999999999999988776 99999999


Q ss_pred             cCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEE
Q 038577          337 RSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVR  416 (860)
Q Consensus       337 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~  416 (860)
                      .+++.+..+.+|...|.+++|+|+++++++|+.||.|++||+.+++.+..+..|..+|.+++|+|+++++++++.||.|+
T Consensus        95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  174 (312)
T 4ery_A           95 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  174 (312)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEE---EEEcCCCCEEE
Q 038577          417 AWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHG---LVFSPTNATLA  493 (860)
Q Consensus       417 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~---l~~s~~~~~l~  493 (860)
                      +||+.+++....+.......+..++++|+++++++++.++ .|++||+++++.+..+.+|...+.+   ....+++.+|+
T Consensus       175 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  253 (312)
T 4ery_A          175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV  253 (312)
T ss_dssp             EEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTT-EEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEE
T ss_pred             EEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCC-eEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEE
Confidence            9999999888888777777899999999999999999998 9999999999999999988765433   23346789999


Q ss_pred             EEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEe--CCCeEEEEeCC
Q 038577          494 SSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACST--LDGQIHFWDPL  549 (860)
Q Consensus       494 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~  549 (860)
                      +++.||.|++||+.+++....+.+|...|.+++|+|+++++++++  .|+.|++|+.+
T Consensus       254 sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          254 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             ECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             EECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            999999999999999988888889999999999999999999997  69999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.5e-38  Score=336.24  Aligned_cols=285  Identities=24%  Similarity=0.451  Sum_probs=253.8

Q ss_pred             ecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCccc------------------CeEEEEEcCCCCEEE
Q 038577          304 ISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYF------------------DVNCLAYSPDSQLLA  365 (860)
Q Consensus       304 ~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~------------------~v~~~~~s~~~~~l~  365 (860)
                      .|...|.+++|+|+|+++++++ + +.+++|++.+++.+..+..|..                  .|.+++|+|+|++|+
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~-~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~  139 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-N-KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  139 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-B-SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-C-CcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence            5888999999999999999875 3 8999999999988877755432                  389999999999999


Q ss_pred             EEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECC-
Q 038577          366 TGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQ-  444 (860)
Q Consensus       366 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-  444 (860)
                      +|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++....+..  ...+.+++++| 
T Consensus       140 s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~--~~~v~~~~~~~~  217 (393)
T 1erj_A          140 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI--EDGVTTVAVSPG  217 (393)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC--SSCEEEEEECST
T ss_pred             EEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEc--CCCcEEEEEECC
Confidence            999999999999999999999999999999999999999999999999999999999888777664  34689999999 


Q ss_pred             CCCEEEEEecCCCeEEEEECCCCceEEEe-------cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCc-------
Q 038577          445 SGEVICAGTLDSFEIFVWSMKTGRLLDIL-------SGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGK-------  510 (860)
Q Consensus       445 ~~~~l~~~~~~~~~i~v~d~~~~~~~~~~-------~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-------  510 (860)
                      +++++++++.|+ .|++||+++++.+..+       .+|...|.+++|+|++++|++++.||.|++||+.+..       
T Consensus       218 ~~~~l~~~s~d~-~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~  296 (393)
T 1erj_A          218 DGKYIAAGSLDR-AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT  296 (393)
T ss_dssp             TCCEEEEEETTS-CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------
T ss_pred             CCCEEEEEcCCC-cEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccC
Confidence            899999999998 9999999999888776       5799999999999999999999999999999997632       


Q ss_pred             -----ceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEE
Q 038577          511 -----GSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFT  585 (860)
Q Consensus       511 -----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  585 (860)
                           ....+.+|...|.+++|+|++.+|++++.||.|++||+.+++++..+.+|..                    .|.
T Consensus       297 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~--------------------~v~  356 (393)
T 1erj_A          297 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--------------------SVI  356 (393)
T ss_dssp             ----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--------------------CEE
T ss_pred             CCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC--------------------CEE
Confidence                 2345567999999999999999999999999999999999999999998875                    599


Q ss_pred             EEEEec------CCCEEEEecCCCeEEEEECCCc
Q 038577          586 TLCYSA------DGSYILAGGSSKYICMYDVADQ  613 (860)
Q Consensus       586 ~l~~s~------~g~~l~~~~~dg~v~vwd~~~~  613 (860)
                      +++|++      ++++|++|+.||.|++|++...
T Consensus       357 ~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          357 SVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             EEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             EEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            999886      6889999999999999998643

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.8e-41  Score=360.35  Aligned_cols=345  Identities=15%  Similarity=0.211  Sum_probs=286.3

Q ss_pred             ceEEEEecCCCC-EEEEE----------EcCCeEEEEECCCce---eEEEEeecCceeEEEEEeeCCCEEEEEEccCCcE
Q 038577          266 KVTACDYHRGLD-MVVVG----------FSNGVFGLYQMPDFV---CIHLLSISREKITTAVFNELGNWLVFGCAKLGQL  331 (860)
Q Consensus       266 ~v~~~~~~~~~~-~l~~~----------~~~g~i~~~~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i  331 (860)
                      .+.+++|+|+++ ++++|          +.||.|++|++.++.   ....+ .+...|.+++|+|+++++++++.+ |.|
T Consensus        14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d-g~v   91 (416)
T 2pm9_A           14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDN-GSL   91 (416)
T ss_dssp             ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESS-SCE
T ss_pred             hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccC-CeE
Confidence            577899999987 88898          889999999998775   33333 467799999999999999988776 999


Q ss_pred             EEEEccC----ceEEEEecCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCe------eEE---EeecCCCceEEE
Q 038577          332 LVWEWRS----ESYILKQQGHYFDVNCLAYSPD-SQLLATGADDNKVKVWTVSSGF------CFV---TFTEHTNAVTAL  397 (860)
Q Consensus       332 ~v~d~~~----~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~------~~~---~~~~~~~~v~~i  397 (860)
                      ++||+.+    ......+.+|...|.+++|+|+ +.+|++++.||.|++||+.++.      ...   ....|...|.++
T Consensus        92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  171 (416)
T 2pm9_A           92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL  171 (416)
T ss_dssp             EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEE
T ss_pred             EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEE
Confidence            9999988    4577888899999999999998 8999999999999999999876      332   336789999999


Q ss_pred             EEeeC-CCEEEEEeCCCcEEEEEccccceeeEeeCCC-----CCcEEEEEECCCC-CEEEEEecCC--CeEEEEECCCC-
Q 038577          398 HFMAN-NHSLLSASLDGTVRAWDLFRYRNFRTFTTPS-----SRQFVSLASDQSG-EVICAGTLDS--FEIFVWSMKTG-  467 (860)
Q Consensus       398 ~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~l~~~~~~~--~~i~v~d~~~~-  467 (860)
                      +|+|+ +..+++++.||.|++||+.+++....+....     ...+.+++++|++ .++++++.++  +.|++||++++ 
T Consensus       172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~  251 (416)
T 2pm9_A          172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN  251 (416)
T ss_dssp             EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred             EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence            99999 7899999999999999999998888887654     6689999999998 5777777664  27999999986 


Q ss_pred             ceEEEec-CcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCC-CEEEEEeCCCeEE
Q 038577          468 RLLDILS-GHEGPVHGLVFSP-TNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDG-RQLACSTLDGQIH  544 (860)
Q Consensus       468 ~~~~~~~-~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~  544 (860)
                      +.+..+. +|...|.+++|+| ++++|++++.||.|++||+.+++....+..|...|.+++|+|++ .+|++++.||.|+
T Consensus       252 ~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~  331 (416)
T 2pm9_A          252 TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIE  331 (416)
T ss_dssp             SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEE
T ss_pred             CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEE
Confidence            6777787 8999999999999 99999999999999999999998888888999999999999999 8999999999999


Q ss_pred             EEeCCCCceeEEEec--------------ccc--cCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEE
Q 038577          545 FWDPLNGELMYTIEG--------------RRD--ISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMY  608 (860)
Q Consensus       545 iwd~~~~~~~~~~~~--------------~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw  608 (860)
                      +||+.++........              +..  ........... .....+..++++++|+|||++|++++.|+.|++|
T Consensus       332 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w  410 (416)
T 2pm9_A          332 VQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL-QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSIT  410 (416)
T ss_dssp             EEESCCCCCSSCC----------------------CCSCCCSSCC-CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCB
T ss_pred             EEEccCCCCCcccccccccccCCcccccccccccccccccccccc-cCCccccCCccceEEeeCCeEEEEeCCCCeEEEE
Confidence            999988765433211              000  00000000011 1122245678899999999999999999999999


Q ss_pred             ECCCc
Q 038577          609 DVADQ  613 (860)
Q Consensus       609 d~~~~  613 (860)
                      ++.++
T Consensus       411 ~~~~~  415 (416)
T 2pm9_A          411 NPKIS  415 (416)
T ss_dssp             CCCCC
T ss_pred             EeccC
Confidence            99875

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.1e-37  Score=320.97  Aligned_cols=293  Identities=23%  Similarity=0.436  Sum_probs=263.8

Q ss_pred             ceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 038577          296 FVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKV  375 (860)
Q Consensus       296 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  375 (860)
                      ......+..|...|.+++|+|+++++++++.+ |.+++|+..+++....+.+|...|.+++|+|++++|++++.|+.|++
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~d-g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v   91 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSAD-KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI   91 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSEEEEEETT-SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCEEEEeeCC-CeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence            45566778899999999999999999988766 99999999999999999999999999999999999999999999999


Q ss_pred             EECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecC
Q 038577          376 WTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLD  455 (860)
Q Consensus       376 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  455 (860)
                      ||+.+++.+..+.+|...|.+++|+|+++++++++.|+.|++||+.+++....+..+ ...+.+++++|+++++++++.|
T Consensus        92 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d  170 (312)
T 4ery_A           92 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYD  170 (312)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETT
T ss_pred             EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCC-CCcEEEEEEcCCCCEEEEEeCC
Confidence            999999999999999999999999999999999999999999999998888777643 4579999999999999999999


Q ss_pred             CCeEEEEECCCCceEEEec-CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeE--EEEE-eeCC
Q 038577          456 SFEIFVWSMKTGRLLDILS-GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVL--TVVY-RPDG  531 (860)
Q Consensus       456 ~~~i~v~d~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~--~~~~-s~~~  531 (860)
                      + .|++||+++++.+..+. .+..++..++|+|++++|++++.||.|++||+.+++....+..|.....  ...+ .+++
T Consensus       171 ~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (312)
T 4ery_A          171 G-LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG  249 (312)
T ss_dssp             S-CEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSS
T ss_pred             C-cEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCC
Confidence            8 99999999998887764 5667899999999999999999999999999999987777776665432  2334 4678


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEec--CCCeEEEEE
Q 038577          532 RQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGG--SSKYICMYD  609 (860)
Q Consensus       532 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~--~dg~v~vwd  609 (860)
                      .+|++++.||.|++||+.+++.+..+.+|..                    .|.+++|+|++++|++++  .|+.|++|+
T Consensus       250 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--------------------~v~~~~~~p~~~~l~s~~~~~d~~i~~W~  309 (312)
T 4ery_A          250 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD--------------------VVISTACHPTENIIASAALENDKTIKLWK  309 (312)
T ss_dssp             CEEEECCTTSCEEEEETTTCCEEEEECCCSS--------------------CEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred             cEEEEECCCCEEEEEECCCchhhhhhhccCC--------------------cEEEEeecCcCCceEEEEccCCccEEEec
Confidence            8999999999999999999999999998876                    599999999999999986  699999998


Q ss_pred             CC
Q 038577          610 VA  611 (860)
Q Consensus       610 ~~  611 (860)
                      .+
T Consensus       310 ~d  311 (312)
T 4ery_A          310 SD  311 (312)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-40  Score=357.86  Aligned_cols=342  Identities=12%  Similarity=0.119  Sum_probs=281.7

Q ss_pred             CccCeeEEEEcCCCC-EEEEE----------cCCCcEEEEEcccCe---EEEEeecCCceeEEEECCCCCEEEEE-eCCe
Q 038577           51 SSSNICRIAVSPDGT-FLLTV----------DENQRCHFINLHCHV---VLHRVRFKYPVNAILFSPNGKYIAVG-TGKL  115 (860)
Q Consensus        51 h~~~v~~va~spdg~-~la~~----------~~d~~i~vwd~~~~~---~~~~~~~~~~v~~~~fspdg~~la~~-~~~~  115 (860)
                      +...|.+++|||+|+ +||++          +.|+.|++||+.++.   .+..+.|...|.+++|+|++++|+++ .++.
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~   90 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGS   90 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCe
Confidence            446789999999997 99999          889999999999875   55566688999999999999999998 7899


Q ss_pred             EEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCC-CCeEEEeecCCeEEEEeecccccCc---ccccceEeecCCCc
Q 038577          116 VQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPD-SNYLLVGSKDLAVRLFYVKEKLKGI---HTNKPFLLLGHRDS  191 (860)
Q Consensus       116 i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-~~~l~s~~~dg~v~vwd~~~~~~~~---~~~~~~~~~~h~~~  191 (860)
                      |++||+.+....   ......+.+|...|.+++|+|+ +++|++++.|+.|++||+.......   .........+|...
T Consensus        91 v~vw~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  167 (416)
T 2pm9_A           91 LELYSTNEANNA---INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE  167 (416)
T ss_dssp             EEEECCSSTTSC---CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred             EEEeeccccccc---ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC
Confidence            999999872210   1146788999999999999998 8999999999999999998872000   00122345789999


Q ss_pred             EEEEEEccC-CCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEE
Q 038577          192 VVGCFFSVD-KKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTAC  270 (860)
Q Consensus       192 i~~~~~~~~-~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  270 (860)
                      |.+++|+|+ +.     ++++++.|+.|++||+.++..                      ...+.......++...+.++
T Consensus       168 v~~~~~~~~~~~-----~l~~~~~dg~v~iwd~~~~~~----------------------~~~~~~~~~~~~~~~~v~~~  220 (416)
T 2pm9_A          168 VISLAWNQSLAH-----VFASAGSSNFASIWDLKAKKE----------------------VIHLSYTSPNSGIKQQLSVV  220 (416)
T ss_dssp             CCEEEECSSCTT-----EEEEESSSSCEEEEETTTTEE----------------------EEEECCCCCSSCCCCCEEEE
T ss_pred             eeEEEeCCCCCc-----EEEEEcCCCCEEEEECCCCCc----------------------ceEEeccccccccCCceEEE
Confidence            999999999 56     899999999999999987432                      11111111122337789999


Q ss_pred             EecCCC-CEEEEEEcCC---eEEEEECCCc-eeEEEEe-ecCceeEEEEEee-CCCEEEEEEccCCcEEEEEccCceEEE
Q 038577          271 DYHRGL-DMVVVGFSNG---VFGLYQMPDF-VCIHLLS-ISREKITTAVFNE-LGNWLVFGCAKLGQLLVWEWRSESYIL  343 (860)
Q Consensus       271 ~~~~~~-~~l~~~~~~g---~i~~~~~~~~-~~~~~~~-~~~~~i~~~~~s~-~~~~l~~~~~~~g~i~v~d~~~~~~~~  343 (860)
                      +|+|++ .++++++.++   .|++||+.++ .....+. .|...+.+++|+| +++.+++++.+ |.|++||+.+++.+.
T Consensus       221 ~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d-g~v~~wd~~~~~~~~  299 (416)
T 2pm9_A          221 EWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD-NTVLLWNPESAEQLS  299 (416)
T ss_dssp             EECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESS-SEEEEECSSSCCEEE
T ss_pred             EECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCC-CCEEEeeCCCCccce
Confidence            999997 6899999998   9999999886 5667777 7889999999999 88888888765 999999999999999


Q ss_pred             EecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEee----------------------------------
Q 038577          344 KQQGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSSGFCFVTFT----------------------------------  388 (860)
Q Consensus       344 ~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~----------------------------------  388 (860)
                      .+..|...|.+++|+|++ .++++++.||.|++|++.++.......                                  
T Consensus       300 ~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (416)
T 2pm9_A          300 QFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAP  379 (416)
T ss_dssp             EEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCC
T ss_pred             eecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCC
Confidence            999999999999999999 899999999999999998764322111                                  


Q ss_pred             -cCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcccc
Q 038577          389 -EHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRY  423 (860)
Q Consensus       389 -~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~  423 (860)
                       .|..++.+++|+|+|++|++++.|+.|++|++.+.
T Consensus       380 ~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          380 TWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             STTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred             ccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence             15678889999999999999999999999998653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.1e-38  Score=323.14  Aligned_cols=303  Identities=17%  Similarity=0.291  Sum_probs=230.1

Q ss_pred             CCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccC--eEEEEe--e-cCCceeEEEECCCCCEEEEE-eCC
Q 038577           41 KSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCH--VVLHRV--R-FKYPVNAILFSPNGKYIAVG-TGK  114 (860)
Q Consensus        41 ~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~--~~~~~~--~-~~~~v~~~~fspdg~~la~~-~~~  114 (860)
                      +.+....+.+|...|.+++|+|+  +||+++.|+.|++||+.++  ..+..+  . |...|.+++|+|++++||++ .|+
T Consensus         3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~   80 (330)
T 2hes_X            3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS   80 (330)
T ss_dssp             CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence            34556667799999999999998  9999999999999999875  455555  2 88899999999999999999 789


Q ss_pred             eEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEE
Q 038577          115 LVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVG  194 (860)
Q Consensus       115 ~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~  194 (860)
                      .|++||+...........+...+.+|.+.|.+++|+|++++|++++.|++|++||+......  ......+.+|...|.+
T Consensus        81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~--~~~~~~~~~h~~~v~~  158 (330)
T 2hes_X           81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE--YECISVLQEHSQDVKH  158 (330)
T ss_dssp             CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC--CEEEEEECCCSSCEEE
T ss_pred             cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC--eEEEEEeccCCCceEE
Confidence            99999986543221223457788999999999999999999999999999999999533011  1335667889999999


Q ss_pred             EEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecC
Q 038577          195 CFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHR  274 (860)
Q Consensus       195 ~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  274 (860)
                      ++|+|++.     +|++++.|++|++|+...+.                                               
T Consensus       159 v~~~p~~~-----~l~s~s~D~~i~iW~~~~~~-----------------------------------------------  186 (330)
T 2hes_X          159 VIWHPSEA-----LLASSSYDDTVRIWKDYDDD-----------------------------------------------  186 (330)
T ss_dssp             EEECSSSS-----EEEEEETTSCEEEEEEETTE-----------------------------------------------
T ss_pred             EEECCCCC-----EEEEEcCCCeEEEEECCCCC-----------------------------------------------
Confidence            99999988     89999999999999875420                                               


Q ss_pred             CCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeC--CCEEEEEEccCCcEEEEEccCc--------eEEEE
Q 038577          275 GLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNEL--GNWLVFGCAKLGQLLVWEWRSE--------SYILK  344 (860)
Q Consensus       275 ~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~g~i~v~d~~~~--------~~~~~  344 (860)
                                           .+++..+..|...|.+++|+|+  +..+++++.+ +.|++||+..+        .....
T Consensus       187 ---------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D-~~v~iw~~~~~~~~~~~~~~~~~~  244 (330)
T 2hes_X          187 ---------------------WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDD-STVRVWKYMGDDEDDQQEWVCEAI  244 (330)
T ss_dssp             ---------------------EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETT-SCEEEEEEEEECTTSCEEEEEEEE
T ss_pred             ---------------------eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCC-CeEEEEEecCCCccccceeEEeee
Confidence                                 1233444556667777777777  4556666554 99999998764        33444


Q ss_pred             ecC-cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--eEE-EeecCCC-ceEEEEEee--CCCEEEEEeCCCcEEE
Q 038577          345 QQG-HYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGF--CFV-TFTEHTN-AVTALHFMA--NNHSLLSASLDGTVRA  417 (860)
Q Consensus       345 ~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~-~~~~~~~-~v~~i~~~~--~~~~l~s~~~dg~i~~  417 (860)
                      +.. |...|.+++|++++ .|++++.||.|++|+..++.  ... ....|.. .|.+++|+|  ++++|++++.||.|++
T Consensus       245 ~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~  323 (330)
T 2hes_X          245 LPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNF  323 (330)
T ss_dssp             CCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEE
T ss_pred             cccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEE
Confidence            444 88999999999765 89999999999999998774  333 3356877 899999999  6889999999999999


Q ss_pred             EEccc
Q 038577          418 WDLFR  422 (860)
Q Consensus       418 wd~~~  422 (860)
                      |++.+
T Consensus       324 W~~~~  328 (330)
T 2hes_X          324 WSLEK  328 (330)
T ss_dssp             EEC--
T ss_pred             EEecc
Confidence            99854

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.5e-37  Score=324.49  Aligned_cols=327  Identities=16%  Similarity=0.200  Sum_probs=284.0

Q ss_pred             cCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEE
Q 038577          140 CNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMF  219 (860)
Q Consensus       140 h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~  219 (860)
                      |.+.|.+++|+|||++++++..++.+..|.....      .......+|...|.+++|+|+++     ++++++ ||.++
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~-----~l~~~~-dg~i~   75 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRH------ARQINTLNHGEVVCAVTISNPTR-----HVYTGG-KGCVK   75 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSE------EEEEEEECCSSCCCEEEECSSSS-----EEEEEC-BSEEE
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCc------cccceeccCCCceEEEEEecCCc-----EEEEcC-CCeEE
Confidence            4567899999999999999888877777765544      34555668999999999999999     999998 99999


Q ss_pred             EeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCce--
Q 038577          220 SWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFV--  297 (860)
Q Consensus       220 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~--  297 (860)
                      +|++.++....                    .   ........+...+.+++|+|+++++++++.+|.|++|++.+++  
T Consensus        76 iw~~~~~~~~~--------------------~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~  132 (337)
T 1gxr_A           76 VWDISHPGNKS--------------------P---VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR  132 (337)
T ss_dssp             EEETTSTTCCS--------------------C---SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E
T ss_pred             EEECCCCCcee--------------------e---eecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc
Confidence            99998753200                    0   0111123577899999999999999999999999999998877  


Q ss_pred             eEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038577          298 CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWT  377 (860)
Q Consensus       298 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  377 (860)
                      ....+..+...+.+++|+|+++.+++++.+ |.+++||+++++....+..|...+.+++|+|+++.+++++.||.|++||
T Consensus       133 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d  211 (337)
T 1gxr_A          133 IKAELTSSAPACYALAISPDSKVCFSCCSD-GNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD  211 (337)
T ss_dssp             EEEEEECSSSCEEEEEECTTSSEEEEEETT-SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             eeeecccCCCceEEEEECCCCCEEEEEeCC-CcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEE
Confidence            566777888899999999999999988776 9999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCC
Q 038577          378 VSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSF  457 (860)
Q Consensus       378 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  457 (860)
                      +.+++.+..+. +...+.+++|+|+++.+++++.|+.+++||+.+.+...  ...+...+.+++++|+++++++++.++ 
T Consensus       212 ~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg-  287 (337)
T 1gxr_A          212 LREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ--LHLHESCVLSLKFAYCGKWFVSTGKDN-  287 (337)
T ss_dssp             TTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE--ECCCSSCEEEEEECTTSSEEEEEETTS-
T ss_pred             CCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE--EcCCccceeEEEECCCCCEEEEecCCC-
Confidence            99998888774 78899999999999999999999999999998876543  234556899999999999999999998 


Q ss_pred             eEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 038577          458 EIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVF  507 (860)
Q Consensus       458 ~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~  507 (860)
                      .|++||+.+++.+... .|...|.+++|+|++++|++++.||.|++|++.
T Consensus       288 ~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          288 LLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             cEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence            9999999999888554 488999999999999999999999999999973

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=6.5e-38  Score=333.02  Aligned_cols=289  Identities=18%  Similarity=0.305  Sum_probs=249.8

Q ss_pred             EEEeecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccC------------------CCeEEEE
Q 038577           87 LHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCN------------------DKVTALN  148 (860)
Q Consensus        87 ~~~~~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~------------------~~v~~l~  148 (860)
                      ...+.|...|.+++|+|||++||++.++.+++|++.+++.       +..+..|.                  ..|.+++
T Consensus        58 ~~~~~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~  130 (393)
T 1erj_A           58 HKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSL-------VARLSDDSAANKDPENLNTSSSPSSDLYIRSVC  130 (393)
T ss_dssp             EEEEECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCE-------EEEECC-----------------CCCCBEEEEE
T ss_pred             EEecCCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCE-------EEEecCccccccccccccccccCCCceeEEEEE
Confidence            3445699999999999999999999899999999998863       44444443                  2499999


Q ss_pred             EcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCC
Q 038577          149 WSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDG  228 (860)
Q Consensus       149 ~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~  228 (860)
                      |+|||++|++++.|+.|++||+.++      .....+.+|...|.+++|+|++.     +|++++.|++|++||+.++..
T Consensus       131 ~s~dg~~l~s~~~d~~i~iwd~~~~------~~~~~~~~h~~~v~~~~~~p~~~-----~l~s~s~d~~v~iwd~~~~~~  199 (393)
T 1erj_A          131 FSPDGKFLATGAEDRLIRIWDIENR------KIVMILQGHEQDIYSLDYFPSGD-----KLVSGSGDRTVRIWDLRTGQC  199 (393)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTSS-----EEEEEETTSEEEEEETTTTEE
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCC------cEEEEEccCCCCEEEEEEcCCCC-----EEEEecCCCcEEEEECCCCee
Confidence            9999999999999999999999987      66788999999999999999999     999999999999999987432


Q ss_pred             CCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecC-CCCEEEEEEcCCeEEEEECCCceeEEEE-----
Q 038577          229 KIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHR-GLDMVVVGFSNGVFGLYQMPDFVCIHLL-----  302 (860)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~g~i~~~~~~~~~~~~~~-----  302 (860)
                                            ..      . ..+...+.+++++| +++++++|+.||.|++||+.++..+..+     
T Consensus       200 ----------------------~~------~-~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~  250 (393)
T 1erj_A          200 ----------------------SL------T-LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE  250 (393)
T ss_dssp             ----------------------EE------E-EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC----
T ss_pred             ----------------------EE------E-EEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccccc
Confidence                                  00      1 12345799999999 8999999999999999999998887766     


Q ss_pred             --eecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc------------eEEEEecCcccCeEEEEEcCCCCEEEEEe
Q 038577          303 --SISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE------------SYILKQQGHYFDVNCLAYSPDSQLLATGA  368 (860)
Q Consensus       303 --~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  368 (860)
                        ..|...|.+++|+|+|+.+++++.+ +.|++||+.+.            .....+.+|...|.+++|+|++.+|++|+
T Consensus       251 ~~~~h~~~v~~v~~~~~g~~l~s~s~d-~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs  329 (393)
T 1erj_A          251 SGTGHKDSVYSVVFTRDGQSVVSGSLD-RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS  329 (393)
T ss_dssp             --CCCSSCEEEEEECTTSSEEEEEETT-SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE
T ss_pred             CCCCCCCCEEEEEECCCCCEEEEEeCC-CEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe
Confidence              4677899999999999999988766 99999998753            34456678999999999999999999999


Q ss_pred             CCCcEEEEECCCCeeEEEeecCCCceEEEEEee------CCCEEEEEeCCCcEEEEEcccc
Q 038577          369 DDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMA------NNHSLLSASLDGTVRAWDLFRY  423 (860)
Q Consensus       369 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~------~~~~l~s~~~dg~i~~wd~~~~  423 (860)
                      .|+.|++||..+++.+..+.+|...|.+++|++      +++.|++++.||.|++|++.+.
T Consensus       330 ~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          330 KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             CCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            999999999999999999999999999999986      6789999999999999998543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-37  Score=320.68  Aligned_cols=293  Identities=20%  Similarity=0.304  Sum_probs=235.4

Q ss_pred             CceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc--eEEEEe-cC-cccCeEEEEEcCCCCEEEEEeCC
Q 038577          295 DFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE--SYILKQ-QG-HYFDVNCLAYSPDSQLLATGADD  370 (860)
Q Consensus       295 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~--~~~~~~-~~-~~~~v~~~~~s~~~~~l~~~~~d  370 (860)
                      +.+.+..+..|...|.+++|+++  .+++++. |+.|++||+..+  .....+ .+ |...|.+++|+|++++|++|+.|
T Consensus         3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~-D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D   79 (330)
T 2hes_X            3 SINLIKSLKLYKEKIWSFDFSQG--ILATGST-DRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD   79 (330)
T ss_dssp             CCEEEEEEECCSSCEEEEEEETT--EEEEEES-SSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccceeeccCCCceeeeccCCC--EEEEEcC-CCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence            45677888999999999999987  6666655 499999999875  444445 44 99999999999999999999999


Q ss_pred             CcEEEEECCC-------CeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcccc----ceeeEeeCCCCCcEEE
Q 038577          371 NKVKVWTVSS-------GFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRY----RNFRTFTTPSSRQFVS  439 (860)
Q Consensus       371 g~i~iwd~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~----~~~~~~~~~~~~~~~~  439 (860)
                      +.|++||+..       ...+..+.+|...|.+++|+|++++|++++.|+.|++||+...    +....+ ..+...+.+
T Consensus        80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~-~~h~~~v~~  158 (330)
T 2hes_X           80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVL-QEHSQDVKH  158 (330)
T ss_dssp             SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEE-CCCSSCEEE
T ss_pred             CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEe-ccCCCceEE
Confidence            9999999853       4567788899999999999999999999999999999999532    233333 345668999


Q ss_pred             EEECCCCCEEEEEecCCCeEEEEECCCC--ceEEEecCcccCeEEEEEcCC--CCEEEEEeCCCcEEEEEccCCc-----
Q 038577          440 LASDQSGEVICAGTLDSFEIFVWSMKTG--RLLDILSGHEGPVHGLVFSPT--NATLASSSWDKTVRLWNVFEGK-----  510 (860)
Q Consensus       440 ~~~~~~~~~l~~~~~~~~~i~v~d~~~~--~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~-----  510 (860)
                      ++|+|++.+|++++.|+ .|++||..++  +.+..+.+|.+.|.+++|+|+  +.+|++++.|++|++||+..+.     
T Consensus       159 v~~~p~~~~l~s~s~D~-~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~  237 (330)
T 2hes_X          159 VIWHPSEALLASSSYDD-TVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQ  237 (330)
T ss_dssp             EEECSSSSEEEEEETTS-CEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCE
T ss_pred             EEECCCCCEEEEEcCCC-eEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccc
Confidence            99999999999999999 9999998876  678889999999999999998  7789999999999999987642     


Q ss_pred             ---ceeEEcc-cCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCc--eeEEE-ecccccCCCccccccccccccCCCCc
Q 038577          511 ---GSVESFP-HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGE--LMYTI-EGRRDISGGRLMTDRRSAANSSSGKC  583 (860)
Q Consensus       511 ---~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  583 (860)
                         ....+.. |...|.+++|++++ +|++++.||.|++||..+++  ..... .+|..                   ..
T Consensus       238 ~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~-------------------~~  297 (330)
T 2hes_X          238 EWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGV-------------------YE  297 (330)
T ss_dssp             EEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTT-------------------SC
T ss_pred             eeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccccc-------------------ce
Confidence               1222223 88999999999665 89999999999999988774  22222 33331                   15


Q ss_pred             EEEEEEec--CCCEEEEecCCCeEEEEECCC
Q 038577          584 FTTLCYSA--DGSYILAGGSSKYICMYDVAD  612 (860)
Q Consensus       584 i~~l~~s~--~g~~l~~~~~dg~v~vwd~~~  612 (860)
                      |.+++|+|  ++++|++++.||.|++||+++
T Consensus       298 v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          298 INVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            99999999  799999999999999999865

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.1e-37  Score=336.42  Aligned_cols=331  Identities=18%  Similarity=0.217  Sum_probs=276.5

Q ss_pred             eEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEec
Q 038577          267 VTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQ  346 (860)
Q Consensus       267 v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~  346 (860)
                      +++++|+|+++++++++.||.+++|+..+++....+..+ ..+....|+++++.+++++.+ |.|++||+.++.....+.
T Consensus        59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~  136 (420)
T 3vl1_A           59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTE-GDIKVLDSNFNLQREIDQ  136 (420)
T ss_dssp             CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETT-SCEEEECTTSCEEEEETT
T ss_pred             ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECC-CCEEEEeCCCcceeeecc
Confidence            457899999999999999999999999887766555544 455566789999999988776 999999999999888888


Q ss_pred             CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcccccee
Q 038577          347 GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNF  426 (860)
Q Consensus       347 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~  426 (860)
                      +|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|+++.|++++.|+.|++||+.+++..
T Consensus       137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~  216 (420)
T 3vl1_A          137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI  216 (420)
T ss_dssp             SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred             cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCcee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             eEeeCC--CCCcE---------------------EEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec-CcccCeEE
Q 038577          427 RTFTTP--SSRQF---------------------VSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS-GHEGPVHG  482 (860)
Q Consensus       427 ~~~~~~--~~~~~---------------------~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~-~h~~~v~~  482 (860)
                      ..+...  ....+                     .+++|+|+++++++++.++ .|++||+++++....+. +|...|.+
T Consensus       217 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~v~~  295 (420)
T 3vl1_A          217 HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG-VITVHNVFSKEQTIQLPSKFTCSCNS  295 (420)
T ss_dssp             EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS-CEEEEETTTCCEEEEECCTTSSCEEE
T ss_pred             EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC-eEEEEECCCCceeEEcccccCCCcee
Confidence            877643  22233                     3445579999999999998 99999999998877664 58899999


Q ss_pred             EEEcCCCC-EEEEEeCCCcEEEEEccCCcc-eeEEcc-cCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEec
Q 038577          483 LVFSPTNA-TLASSSWDKTVRLWNVFEGKG-SVESFP-HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEG  559 (860)
Q Consensus       483 l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  559 (860)
                      ++|+|+++ +|++++.||.|++||+.+++. ...+.. |...+.++ +++++++|++++.||.|++|++.+......+..
T Consensus       296 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~  374 (420)
T 3vl1_A          296 LTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSGFDTSIKLDIISDPESERPAIE  374 (420)
T ss_dssp             EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCEEC
T ss_pred             EEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEEecCCccEEEEeccCCCCCcccee
Confidence            99999999 999999999999999998764 444444 66777777 456889999999999999999887432221111


Q ss_pred             ccccCCCccccccccccccCCCCcEEEEEEecCCC---EEEEecCCCeEEEEECCC
Q 038577          560 RRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGS---YILAGGSSKYICMYDVAD  612 (860)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~---~l~~~~~dg~v~vwd~~~  612 (860)
                      ...           ......+...|.+++|+|+++   .|++++.+|.+.+|++++
T Consensus       375 ~~~-----------~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          375 FET-----------PTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             TTS-----------CEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             ccC-----------ccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            000           001122334699999999999   888888999999999875

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.9e-37  Score=320.43  Aligned_cols=306  Identities=19%  Similarity=0.307  Sum_probs=259.8

Q ss_pred             CCceeEEEEeecCceeEEEEEeeCC-CEEEEEEccCCcEEEEEccCc-----eEEEEecCcccCeEEEEEcCCCCEEEEE
Q 038577          294 PDFVCIHLLSISREKITTAVFNELG-NWLVFGCAKLGQLLVWEWRSE-----SYILKQQGHYFDVNCLAYSPDSQLLATG  367 (860)
Q Consensus       294 ~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~g~i~v~d~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~  367 (860)
                      +..+...++++|.+.|++++|+|++ ++|++++. |+.|++||+.+.     .....+.+|...|.+++|+|++++|+++
T Consensus        26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~-D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~  104 (340)
T 4aow_A           26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASR-DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSG  104 (340)
T ss_dssp             CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEET-TSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcC-CCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence            3445567899999999999999985 66766665 499999998754     3566778999999999999999999999


Q ss_pred             eCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCC-
Q 038577          368 ADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSG-  446 (860)
Q Consensus       368 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-  446 (860)
                      +.|+.|++|+............+...+....+++++..+++++.|+.+++||+............+...+..+++++++ 
T Consensus       105 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  184 (340)
T 4aow_A          105 SWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS  184 (340)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS
T ss_pred             cccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC
Confidence            9999999999999999999989999999999999999999999999999999987766666666667788899998765 


Q ss_pred             -CEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEE
Q 038577          447 -EVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTV  525 (860)
Q Consensus       447 -~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  525 (860)
                       .++++++.|+ .|++||+++++.+..+.+|.++|++++|+|++++|++++.||.|++||+.+.+.... ..+...+.++
T Consensus       185 ~~~~~s~~~d~-~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~-~~~~~~v~~~  262 (340)
T 4aow_A          185 NPIIVSCGWDK-LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT-LDGGDIINAL  262 (340)
T ss_dssp             SCEEEEEETTS-CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE-EECSSCEEEE
T ss_pred             CcEEEEEcCCC-EEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeee-ecCCceEEee
Confidence             5677888888 999999999999999999999999999999999999999999999999998875544 4456789999


Q ss_pred             EEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeE
Q 038577          526 VYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYI  605 (860)
Q Consensus       526 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v  605 (860)
                      +|+|++.++ +++.|+.|++||++++..+..+..+...           .....+...|++++|+|||++|++|+.||.|
T Consensus       263 ~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----------~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v  330 (340)
T 4aow_A          263 CFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVIS-----------TSSKAEPPQCTSLAWSADGQTLFAGYTDNLV  330 (340)
T ss_dssp             EECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC------------------CCCCCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ecCCCCcee-eccCCCEEEEEECCCCeEEEecccccee-----------eeccCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence            999988755 4556999999999999888877654321           1122345679999999999999999999999


Q ss_pred             EEEECCCce
Q 038577          606 CMYDVADQV  614 (860)
Q Consensus       606 ~vwd~~~~~  614 (860)
                      ++||+++|.
T Consensus       331 ~iW~~~tGt  339 (340)
T 4aow_A          331 RVWQVTIGT  339 (340)
T ss_dssp             EEEEEEC--
T ss_pred             EEEeCCCcC
Confidence            999999985

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=5.6e-38  Score=338.70  Aligned_cols=344  Identities=13%  Similarity=0.120  Sum_probs=292.4

Q ss_pred             CeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEee
Q 038577          143 KVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWG  222 (860)
Q Consensus       143 ~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~  222 (860)
                      .+++++|+|++++|++++.|+.|++||+.+.      .....+..| ..+....|++++.     +|++++.||.|++||
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~------~~~~~~~~~-~~~~~~~~~~~~~-----~l~~~~~dg~i~iwd  125 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIR------DGSKMLKRA-DYTAVDTAKLQMR-----RFILGTTEGDIKVLD  125 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSE------ETTTTSCSC-CEEEEEEECSSSC-----EEEEEETTSCEEEEC
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEeccc------ceeeEEecC-CceEEEEEecCCC-----EEEEEECCCCEEEEe
Confidence            3457999999999999999999999999887      334444555 4455567899999     999999999999999


Q ss_pred             ecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEE
Q 038577          223 FSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLL  302 (860)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~  302 (860)
                      +.++..                            ...+..|...|.+++|+|++++|++++.||.|++||+.+++.+..+
T Consensus       126 ~~~~~~----------------------------~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  177 (420)
T 3vl1_A          126 SNFNLQ----------------------------REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL  177 (420)
T ss_dssp             TTSCEE----------------------------EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE
T ss_pred             CCCcce----------------------------eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE
Confidence            876421                            2345678899999999999999999999999999999999999999


Q ss_pred             eecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecC---cccCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 038577          303 SISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQG---HYFDVNCLAYSPDSQLLATGADDNKVKVWTVS  379 (860)
Q Consensus       303 ~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  379 (860)
                      ..|...|.+++|+|+++.+++++.+ |.|++||+++++.+..+..   |...+.++++.|++...               
T Consensus       178 ~~h~~~v~~~~~~~~~~~l~s~~~d-~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------  241 (420)
T 3vl1_A          178 IGHRATVTDIAIIDRGRNVLSASLD-GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ---------------  241 (420)
T ss_dssp             ECCSSCEEEEEEETTTTEEEEEETT-SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS---------------
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCC-CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce---------------
Confidence            9999999999999999999988776 9999999999999888864   66778888887654322               


Q ss_pred             CCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCC-EEEEEecCCCe
Q 038577          380 SGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGE-VICAGTLDSFE  458 (860)
Q Consensus       380 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~  458 (860)
                            ....+...+.+++|+|+++++++++.||.|++||+.+++....+...+...+.+++++|++. ++++++.++ .
T Consensus       242 ------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg-~  314 (420)
T 3vl1_A          242 ------LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENG-M  314 (420)
T ss_dssp             ------CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTS-E
T ss_pred             ------eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCC-e
Confidence                  12346778899999999999999999999999999999988888877788999999999999 999999998 9


Q ss_pred             EEEEECCCCce-EEEecC-cccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCc---------ceeEEcccCCCeEEEEE
Q 038577          459 IFVWSMKTGRL-LDILSG-HEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGK---------GSVESFPHTHDVLTVVY  527 (860)
Q Consensus       459 i~v~d~~~~~~-~~~~~~-h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~  527 (860)
                      |++||+++++. +..+.+ |...|.++.+ +++++|++++.||.|++||+....         .......+...+.+++|
T Consensus       315 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  393 (420)
T 3vl1_A          315 LAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCY  393 (420)
T ss_dssp             EEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEE
T ss_pred             EEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEE
Confidence            99999998754 666766 6778888855 578899999999999999997742         23345578889999999


Q ss_pred             eeCCC---EEEEEeCCCeEEEEeCCC
Q 038577          528 RPDGR---QLACSTLDGQIHFWDPLN  550 (860)
Q Consensus       528 s~~~~---~l~~~~~dg~i~iwd~~~  550 (860)
                      +|+++   .+++++.+|.+.+|++.+
T Consensus       394 s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          394 VSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             ECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             ccCCCCcceEEEEcCCceEEEEeccC
Confidence            99999   788888899999999864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.5e-36  Score=316.36  Aligned_cols=297  Identities=16%  Similarity=0.230  Sum_probs=249.4

Q ss_pred             cceEeecCCCcEEEEEE-----cc-CCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEe
Q 038577          181 KPFLLLGHRDSVVGCFF-----SV-DKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGL  254 (860)
Q Consensus       181 ~~~~~~~h~~~i~~~~~-----~~-~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (860)
                      ....+.+|.+.|.+++|     ++ ++.     +|++++.|++|++|++.......                    .. .
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~-----~l~sgs~D~~v~iWd~~~~~~~~--------------------~~-~   66 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSP-----VLISGSRDKTVMIWKLYEEEQNG--------------------YF-G   66 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCC-----EEEEEETTSCEEEEEECSSCCSS--------------------BS-E
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCC-----EEEEEcCCCEEEEEECCcCCccc--------------------cc-c
Confidence            45678999999999999     66 777     99999999999999997643200                    00 0


Q ss_pred             eeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEE
Q 038577          255 LRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVW  334 (860)
Q Consensus       255 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~  334 (860)
                      .....+.+|...|.+++|+|++.++++++.||.|++||+.+++.+..+..|...|.+++|+|+++.+++++.+ +.|++|
T Consensus        67 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d-~~i~~w  145 (343)
T 2xzm_R           67 IPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAE-REIKLW  145 (343)
T ss_dssp             EEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETT-SCEEEE
T ss_pred             cccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCC-CEEEEE
Confidence            1234466888999999999999999999999999999999999999999999999999999999999988776 999999


Q ss_pred             EccCceEEEEe--cCcccCeEEEEEcCCC----------CEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeC
Q 038577          335 EWRSESYILKQ--QGHYFDVNCLAYSPDS----------QLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMAN  402 (860)
Q Consensus       335 d~~~~~~~~~~--~~~~~~v~~~~~s~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~  402 (860)
                      |+.........  ..|...|.+++|+|++          .++++++.||.|++|| ........+.+|...|.+++|+|+
T Consensus       146 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~  224 (343)
T 2xzm_R          146 NILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPN  224 (343)
T ss_dssp             ESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTT
T ss_pred             eccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCC
Confidence            99854333222  2688899999999987          7999999999999999 456777888999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcccc-ceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEE--Eec-----
Q 038577          403 NHSLLSASLDGTVRAWDLFRY-RNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLD--ILS-----  474 (860)
Q Consensus       403 ~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~--~~~-----  474 (860)
                      +++|++++.||.|++||+.+. .....+..  ...+.+++|+|++.+++++. ++ .+++||+.+++...  .+.     
T Consensus       225 g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~--~~~v~~v~~sp~~~~la~~~-d~-~v~iw~~~~~~~~~~~~~~~~~~~  300 (343)
T 2xzm_R          225 GKYIATGGKDKKLLIWDILNLTYPQREFDA--GSTINQIAFNPKLQWVAVGT-DQ-GVKIFNLMTQSKAPVCTIEAEPIT  300 (343)
T ss_dssp             SSEEEEEETTCEEEEEESSCCSSCSEEEEC--SSCEEEEEECSSSCEEEEEE-SS-CEEEEESSSCCSCSEEECCCCSGG
T ss_pred             CCEEEEEcCCCeEEEEECCCCcccceeecC--CCcEEEEEECCCCCEEEEEC-CC-CEEEEEeCCCCCCceEEeecCcch
Confidence            999999999999999999543 33333332  34689999999999887665 55 69999998876543  433     


Q ss_pred             ------CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 038577          475 ------GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEG  509 (860)
Q Consensus       475 ------~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~  509 (860)
                            +|...|.+++|+|+|++|++|+.||.|++|++.++
T Consensus       301 ~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          301 KAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             GBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             hhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence                  68889999999999999999999999999998764

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-36  Score=318.58  Aligned_cols=297  Identities=19%  Similarity=0.229  Sum_probs=267.3

Q ss_pred             eeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038577          297 VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVW  376 (860)
Q Consensus       297 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  376 (860)
                      .....+..|...|.+++|+|+++++++++.+ |.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++|
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw  101 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKD-SSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW  101 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSCEEEEEESS-SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred             cccEEEEEeeceEEEEEEcCCCCEEEEEeCC-CEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            4456678899999999999999999988766 999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCC-----CcEEEEEccccceeeEee-----------C-CCCCcEEE
Q 038577          377 TVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD-----GTVRAWDLFRYRNFRTFT-----------T-PSSRQFVS  439 (860)
Q Consensus       377 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~-----------~-~~~~~~~~  439 (860)
                      |+.+++.+..+. +...+.+++|+|+++++++++.+     +.+++||+........+.           . .....+.+
T Consensus       102 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (369)
T 3zwl_B          102 DVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV  180 (369)
T ss_dssp             ETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred             ECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence            999999998887 88999999999999999999999     999999998764322221           1 11227899


Q ss_pred             EEECCCCCEEEEEecCCCeEEEEECCC-CceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEccc
Q 038577          440 LASDQSGEVICAGTLDSFEIFVWSMKT-GRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPH  518 (860)
Q Consensus       440 ~~~~~~~~~l~~~~~~~~~i~v~d~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  518 (860)
                      ++++|+++++++++.++ .|++||+++ ++.+..+..|...|.+++|+|++++|++++.||.|++||+.+++....+ .+
T Consensus       181 ~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~  258 (369)
T 3zwl_B          181 AGWSTKGKYIIAGHKDG-KISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY-ET  258 (369)
T ss_dssp             EEECGGGCEEEEEETTS-EEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-EC
T ss_pred             EEEcCCCCEEEEEcCCC-EEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeee-cC
Confidence            99999999999999998 999999998 7888999999999999999999999999999999999999998754444 48


Q ss_pred             CCCeEEEEEeeCCCEEEEEeCCC--------------eEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcE
Q 038577          519 THDVLTVVYRPDGRQLACSTLDG--------------QIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCF  584 (860)
Q Consensus       519 ~~~v~~~~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  584 (860)
                      ...+..++|+|+++++++++.++              .+++||..+++.+..+.+|..                    .|
T Consensus       259 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--------------------~v  318 (369)
T 3zwl_B          259 DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG--------------------PL  318 (369)
T ss_dssp             SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSS--------------------CE
T ss_pred             CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccC--------------------cE
Confidence            88999999999999999999988              899999999999999988875                    59


Q ss_pred             EEEEEecCCCEEEEecCCCeEEEEECCCceEEE
Q 038577          585 TTLCYSADGSYILAGGSSKYICMYDVADQVLLR  617 (860)
Q Consensus       585 ~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~  617 (860)
                      ++++|+|+|++|++++.||.|++|+++++....
T Consensus       319 ~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~  351 (369)
T 3zwl_B          319 NTVAISPQGTSYASGGEDGFIRLHHFEKSYFDF  351 (369)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEEECHHHHTC
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECccccchh
Confidence            999999999999999999999999999876443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.6e-35  Score=321.41  Aligned_cols=325  Identities=20%  Similarity=0.370  Sum_probs=284.6

Q ss_pred             ccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc
Q 038577          258 DDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR  337 (860)
Q Consensus       258 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~  337 (860)
                      ..+.+|...+.. ++.++++++++|+.||.|++||+.+++.+..+..|...|.+++|+  ++.+++++.+ |.|++||+.
T Consensus       112 ~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~d-g~i~vwd~~  187 (445)
T 2ovr_B          112 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTD-RTLKVWNAE  187 (445)
T ss_dssp             EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETT-SCEEEEETT
T ss_pred             EEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCC-CeEEEEECC
Confidence            345667766533 355578999999999999999999999999999999999999997  5677777665 999999999


Q ss_pred             CceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 038577          338 SESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRA  417 (860)
Q Consensus       338 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~  417 (860)
                      +++.+..+.+|...|.+++++  ++.+++|+.||.|++||+.+++.+..+.+|...|.++.+  ++..+++++.||.|++
T Consensus       188 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i  263 (445)
T 2ovr_B          188 TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKV  263 (445)
T ss_dssp             TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEE
T ss_pred             cCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEE
Confidence            999999999999999999996  568999999999999999999999999999999999998  6789999999999999


Q ss_pred             EEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeC
Q 038577          418 WDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSW  497 (860)
Q Consensus       418 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  497 (860)
                      ||+.+++....+.. +...+.++.+  ++.++++++.|+ .|++||+++++.+..+.+|...+.++.+  +++++++++.
T Consensus       264 wd~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~  337 (445)
T 2ovr_B          264 WDPETETCLHTLQG-HTNRVYSLQF--DGIHVVSGSLDT-SIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNA  337 (445)
T ss_dssp             EEGGGTEEEEEECC-CSSCEEEEEE--CSSEEEEEETTS-CEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEET
T ss_pred             EECCCCcEeEEecC-CCCceEEEEE--CCCEEEEEeCCC-eEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeC
Confidence            99999988887764 4457888888  889999999998 9999999999999999999999998887  4679999999


Q ss_pred             CCcEEEEEccCCcceeEEcc---cCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCcccccccc
Q 038577          498 DKTVRLWNVFEGKGSVESFP---HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRS  574 (860)
Q Consensus       498 dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  574 (860)
                      ||.|++||+.+++....+..   |...|++++|+  +++|++++.||.|++||+.+++.+..+.....            
T Consensus       338 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~------------  403 (445)
T 2ovr_B          338 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLES------------  403 (445)
T ss_dssp             TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTT------------
T ss_pred             CCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeecccc------------
Confidence            99999999999887777665   88899999995  68999999999999999999999888842110            


Q ss_pred             ccccCCCCcEEEEEEecCCCEEEEecCCCe----EEEEECCCc
Q 038577          575 AANSSSGKCFTTLCYSADGSYILAGGSSKY----ICMYDVADQ  613 (860)
Q Consensus       575 ~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~----v~vwd~~~~  613 (860)
                         ..+...|.+++|+|+|.+|++++.||+    |.+||+...
T Consensus       404 ---~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          404 ---GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             ---GGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             ---CCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence               011246999999999999999999997    999998753

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-38  Score=342.25  Aligned_cols=371  Identities=12%  Similarity=0.078  Sum_probs=258.2

Q ss_pred             cCeEEEEeecCCceeEEEECCCC---------CEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCC
Q 038577           83 CHVVLHRVRFKYPVNAILFSPNG---------KYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDS  153 (860)
Q Consensus        83 ~~~~~~~~~~~~~v~~~~fspdg---------~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~  153 (860)
                      +++....+.+.+.|.+|+|+|++         ++||++.....       ..                      ..+|++
T Consensus       123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~-------~~----------------------~~~~~~  173 (524)
T 2j04_B          123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYM-------DE----------------------PLNEHL  173 (524)
T ss_dssp             CCSCEEEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC---------------------------------------
T ss_pred             CCcceEEEECCCceeEEEecccCCCCccCcCCeEEEEEEeccc-------CC----------------------ccchhh
Confidence            34444556678999999999987         79998832210       00                      136899


Q ss_pred             CeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCC-CccceEEEEcCCccEEEeeecCCCCCCcc
Q 038577          154 NYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKT-DKVNRIYTIARDCYMFSWGFSGNDGKIDE  232 (860)
Q Consensus       154 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~-~~~~~l~s~~~dg~i~~w~~~~~~~~~~~  232 (860)
                      +.+++++.|++|+||++.++ +. .......+.+|.+.|.+++|+|++.. ....+|++++.||+|++|++..+......
T Consensus       174 ~~laS~s~D~tI~iWd~~~~-~~-~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~  251 (524)
T 2j04_B          174 EMFDKEKHSSCIQIFKMNTS-TL-HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV  251 (524)
T ss_dssp             --------CEEEEEEEEETT-TC-CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE
T ss_pred             hhhccCCCCceEEEEEccCC-CC-CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc
Confidence            99999999999999999876 21 00112456788899999999997210 00128999999999999999765321000


Q ss_pred             ccCCCCCCCCCCCcceeeeEEe-eeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCce-eEEEEeecCceeE
Q 038577          233 TMEDSEPPSPGTPERRVKKWGL-LRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFV-CIHLLSISREKIT  310 (860)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~-~~~~~~~~~~~i~  310 (860)
                                        .... .....+.+|...|.+++|+|+ ..|++|+.||.|++||+.++. ....+..|...|.
T Consensus       252 ------------------~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~  312 (524)
T 2j04_B          252 ------------------FKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYIL  312 (524)
T ss_dssp             ------------------EECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEE
T ss_pred             ------------------ceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEE
Confidence                              0000 011235567889999999986 489999999999999998764 4566888999999


Q ss_pred             EE--EEeeCC-CEEEEEEccCCcEEEEEccCceEEEEecCccc--CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 038577          311 TA--VFNELG-NWLVFGCAKLGQLLVWEWRSESYILKQQGHYF--DVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFV  385 (860)
Q Consensus       311 ~~--~~s~~~-~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  385 (860)
                      ++  +|+++| ..+++++.+ ++|++||+++++....+.+|..  .|.+++|+|+++.+++++.|++|++||++++.++.
T Consensus       313 sv~~~~s~~g~~~laS~S~D-~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~  391 (524)
T 2j04_B          313 SVSTAYSDFEDTVVSTVAVD-GYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVH  391 (524)
T ss_dssp             EEEEECCTTSCCEEEEEETT-SEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCE
T ss_pred             EEEEEcCCCCCeEEEEeccC-CeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccce
Confidence            99  567887 666666655 9999999998876655656643  58899999999999999999999999999999888


Q ss_pred             EeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEee----CCCCCcEEEEEECCCCCEEEEEecCCCeEEE
Q 038577          386 TFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFT----TPSSRQFVSLASDQSGEVICAGTLDSFEIFV  461 (860)
Q Consensus       386 ~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v  461 (860)
                      .+.+|.+.|++++|+|+++.|++|+.||+|++||+... ......    ......+..++++|++..+..  .++  ..+
T Consensus       392 ~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~--~~~--~~~  466 (524)
T 2j04_B          392 PLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI--DSS--YEV  466 (524)
T ss_dssp             EEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEE--CCC--CCC
T ss_pred             eeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEc--cCC--cee
Confidence            89999999999999999999999999999999998653 222211    111224678999999986532  232  333


Q ss_pred             EECC-CCceEEEecCcccCeEEEEEcCCCC---EEEEEeCCCcEEEEEccCC
Q 038577          462 WSMK-TGRLLDILSGHEGPVHGLVFSPTNA---TLASSSWDKTVRLWNVFEG  509 (860)
Q Consensus       462 ~d~~-~~~~~~~~~~h~~~v~~l~~s~~~~---~l~s~~~dg~i~iwd~~~~  509 (860)
                      |+.. ++..+..+.+|..+|.+++|+|++.   ++|+|+.||.|+||++...
T Consensus       467 ~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          467 YPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             CC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred             cccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence            4332 4677888999999999999999964   9999999999999998643

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3e-35  Score=307.52  Aligned_cols=298  Identities=20%  Similarity=0.283  Sum_probs=242.2

Q ss_pred             EEEEEeeccCCCeEEEEEcCC-CCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEE
Q 038577          132 ELIRTLADCNDKVTALNWSPD-SNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIY  210 (860)
Q Consensus       132 ~~~~~~~~h~~~v~~l~~s~d-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~  210 (860)
                      .+..+|.||.+.|++++|+|+ +++|++|+.|++|++||+... +.........+.+|...|.+++|+|+++     +|+
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~-~~~~~~~~~~l~~h~~~V~~~~~s~dg~-----~l~  102 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRD-ETNYGIPQRALRGHSHFVSDVVISSDGQ-----FAL  102 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCS-SSCSEEEEEEECCCSSCEEEEEECTTSS-----EEE
T ss_pred             EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC-CcccceeeEEEeCCCCCEEEEEECCCCC-----EEE
Confidence            356789999999999999998 589999999999999999876 2211223445666666666666666666     666


Q ss_pred             EEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEE
Q 038577          211 TIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGL  290 (860)
Q Consensus       211 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~  290 (860)
                      +++.|+.+++|+..                                                                  
T Consensus       103 s~~~d~~i~~~~~~------------------------------------------------------------------  116 (340)
T 4aow_A          103 SGSWDGTLRLWDLT------------------------------------------------------------------  116 (340)
T ss_dssp             EEETTSEEEEEETT------------------------------------------------------------------
T ss_pred             EEcccccceEEeec------------------------------------------------------------------
Confidence            66666666665544                                                                  


Q ss_pred             EECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEE-EecCcccCeEEEEEcCCC--CEEEEE
Q 038577          291 YQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYIL-KQQGHYFDVNCLAYSPDS--QLLATG  367 (860)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~-~~~~~~~~v~~~~~s~~~--~~l~~~  367 (860)
                          ..........+...+....+++++..+++++.+ +.+++||........ ...+|...+.+++|++++  ..++++
T Consensus       117 ----~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~  191 (340)
T 4aow_A          117 ----TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD-KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC  191 (340)
T ss_dssp             ----TTEEEEEEECCSSCEEEEEECTTSSCEEEEETT-SCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEE
T ss_pred             ----ccceeeeecCCCCceeEEEEeecCccceeecCC-CeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEE
Confidence                334444444555677778888999999888766 999999998765443 346789999999998864  578899


Q ss_pred             eCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCC
Q 038577          368 ADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGE  447 (860)
Q Consensus       368 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (860)
                      +.|+.|++||+.+++.+..+.+|..+|.+++|+|++++|++++.||.|++||+.+.+.+..+...  ..+.+++++|++.
T Consensus       192 ~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~  269 (340)
T 4aow_A          192 GWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNRY  269 (340)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS--SCEEEEEECSSSS
T ss_pred             cCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC--ceEEeeecCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999888877654  4789999999987


Q ss_pred             EEEEEecCCCeEEEEECCCCceEEEec---------CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 038577          448 VICAGTLDSFEIFVWSMKTGRLLDILS---------GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGK  510 (860)
Q Consensus       448 ~l~~~~~~~~~i~v~d~~~~~~~~~~~---------~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~  510 (860)
                      +++.+ .++ .|++||++++..+..+.         +|...|++++|+|++++|++|+.||.|++||+.+|+
T Consensus       270 ~~~~~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          270 WLCAA-TGP-SIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEEE-ETT-EEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             eeecc-CCC-EEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            76555 566 99999999887766553         688999999999999999999999999999999875

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.1e-36  Score=323.79  Aligned_cols=307  Identities=15%  Similarity=0.178  Sum_probs=261.3

Q ss_pred             eEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce------EEEEecCcccCeEEEEEcCC----C---CEE
Q 038577          298 CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES------YILKQQGHYFDVNCLAYSPD----S---QLL  364 (860)
Q Consensus       298 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~------~~~~~~~~~~~v~~~~~s~~----~---~~l  364 (860)
                      ....+..|...|.+++|+|  +.+++++.+ |.|++|++.++.      ....+.+|...|.+++|+|+    +   ++|
T Consensus         8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l   84 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN--SFTVSCSGD-GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   84 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS--SEEEEEETT-SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             hhhhhhhhhcCeEEEEecC--CeEEEEcCC-CEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence            3455678999999999998  677777665 999999999887      67788899999999999999    9   999


Q ss_pred             EEEeCCCcEEEEECCCCee-----EEEeecC-----CCceEEEEEe----eCCCE-EEEEeCCCcEEEEEccc------c
Q 038577          365 ATGADDNKVKVWTVSSGFC-----FVTFTEH-----TNAVTALHFM----ANNHS-LLSASLDGTVRAWDLFR------Y  423 (860)
Q Consensus       365 ~~~~~dg~i~iwd~~~~~~-----~~~~~~~-----~~~v~~i~~~----~~~~~-l~s~~~dg~i~~wd~~~------~  423 (860)
                      ++++.||.|++|++.++..     ...+..|     ...|.+++|+    |+++. |++++.||.|++||+.+      .
T Consensus        85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  164 (397)
T 1sq9_A           85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  164 (397)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence            9999999999999998887     8888888     5999999999    99999 99999999999999998      6


Q ss_pred             ceee-----Eee------CCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC---c---ccCeEEEEEc
Q 038577          424 RNFR-----TFT------TPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG---H---EGPVHGLVFS  486 (860)
Q Consensus       424 ~~~~-----~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~---h---~~~v~~l~~s  486 (860)
                      +...     .+.      ..+...+.+++++|++ ++++++.++ .|++||+++++.+..+..   |   ...|.+++|+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~  242 (397)
T 1sq9_A          165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNG-TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS  242 (397)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTS-EEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred             ceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCC-cEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence            6655     554      3456678999999999 999999888 999999999999999998   9   9999999999


Q ss_pred             CCCCEEEEEeCC---CcEEEEEccCCcceeEEcc-------------cCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCC
Q 038577          487 PTNATLASSSWD---KTVRLWNVFEGKGSVESFP-------------HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLN  550 (860)
Q Consensus       487 ~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  550 (860)
                      |++++|++++.|   |.|++||+.+++....+..             |...|.+++|+|++++|++++.||.|++||+.+
T Consensus       243 ~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  322 (397)
T 1sq9_A          243 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT  322 (397)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             CCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            999999999999   9999999999987777777             999999999999999999999999999999999


Q ss_pred             CceeEEEe------cccccCCCccccccccccccCCCCcEEEEEEecCC----------CEEEEecCCCeEEEEECCCce
Q 038577          551 GELMYTIE------GRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADG----------SYILAGGSSKYICMYDVADQV  614 (860)
Q Consensus       551 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g----------~~l~~~~~dg~v~vwd~~~~~  614 (860)
                      ++.+..+.      +|....     ..........+...|++++|+|+|          ++|++++.||.|++|++.+|+
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          323 KERITTLNMHCDDIEIEEDI-----LAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             TEEEEEEECCGGGCSSGGGC-----CCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             CceeEEEecccCcccchhhh-----hccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            99999998      441000     000000111224579999999999          799999999999999998864

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.9e-38  Score=339.47  Aligned_cols=314  Identities=9%  Similarity=0.015  Sum_probs=234.8

Q ss_pred             cCCCCEEEEEEcCCeEEEEECCCceeE----EEEeecCceeEEEEEeeC------CCEEEEEEccCCcEEEEEccCceE-
Q 038577          273 HRGLDMVVVGFSNGVFGLYQMPDFVCI----HLLSISREKITTAVFNEL------GNWLVFGCAKLGQLLVWEWRSESY-  341 (860)
Q Consensus       273 ~~~~~~l~~~~~~g~i~~~~~~~~~~~----~~~~~~~~~i~~~~~s~~------~~~l~~~~~~~g~i~v~d~~~~~~-  341 (860)
                      +|+++.+++++.||.|++|++.+++..    ..+..+.+.|..++|+|+      +..|++++.+ |+|++||+.++.. 
T Consensus       170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~D-gtvrlWd~~~~~~~  248 (524)
T 2j04_B          170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQE-GTINFLEIIDNATD  248 (524)
T ss_dssp             ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETT-SCEEEEECCCCSSS
T ss_pred             chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecC-CeEEEEEcCCCccc
Confidence            588899999999999999999776542    345667788999999997      4677777665 9999999976531 


Q ss_pred             ----------EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eEEEeecCCCceEEE--EEeeCC-CEEE
Q 038577          342 ----------ILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGF-CFVTFTEHTNAVTAL--HFMANN-HSLL  407 (860)
Q Consensus       342 ----------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i--~~~~~~-~~l~  407 (860)
                                ...+.+|...|++++|++++ .|++|+.||+|++||++++. ....+.+|...|.++  +|+|++ .+|+
T Consensus       249 ~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~la  327 (524)
T 2j04_B          249 VHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVS  327 (524)
T ss_dssp             SSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEE
T ss_pred             cccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEE
Confidence                      23567899999999999864 89999999999999998763 455688999999999  567887 8999


Q ss_pred             EEeCCCcEEEEEccccceeeEeeCCCC-CcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEc
Q 038577          408 SASLDGTVRAWDLFRYRNFRTFTTPSS-RQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFS  486 (860)
Q Consensus       408 s~~~dg~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s  486 (860)
                      +++.|++|++||+++++....+..... ..+.+++|+|++..+++++.++ .|++||++++..+..+.+|.+.|++++|+
T Consensus       328 S~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~-tv~lwd~~~~~~~~~l~gH~~~V~sva~S  406 (524)
T 2j04_B          328 TVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGAS-SLRAVPSRAAFAVHPLVSRETTITAIGVS  406 (524)
T ss_dssp             EEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSS-EEEEEETTCTTCCEEEEECSSCEEEEECC
T ss_pred             EeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCC-cEEEEECcccccceeeecCCCceEEEEeC
Confidence            999999999999998877666553322 2467899999999999999888 99999999999888899999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEccCCcceeEEc-----ccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCC-CCceeEEEecc
Q 038577          487 PTNATLASSSWDKTVRLWNVFEGKGSVESF-----PHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPL-NGELMYTIEGR  560 (860)
Q Consensus       487 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~  560 (860)
                      |++++|++|+.||+|++||+.... .....     .+...+.+++|+|++..+. ...  .+.+|+.. ++..+..+.+|
T Consensus       407 p~g~~l~Sgs~Dgtv~lwd~~~~~-~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh  482 (524)
T 2j04_B          407 RLHPMVLAGSADGSLIITNAARRL-LHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAH  482 (524)
T ss_dssp             SSCCBCEEEETTTEEECCBSCSST-TTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC-------------C
T ss_pred             CCCCeEEEEECCCEEEEEechHhh-ccccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCC
Confidence            999999999999999999986542 21111     1222477999999998553 222  23444443 56677777777


Q ss_pred             cccCCCccccccccccccCCCCcEEEEEEecCCC---EEEEecCCCeEEEEECCCc
Q 038577          561 RDISGGRLMTDRRSAANSSSGKCFTTLCYSADGS---YILAGGSSKYICMYDVADQ  613 (860)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~---~l~~~~~dg~v~vwd~~~~  613 (860)
                      ..                    .|.+++|+|++.   +|++|+.+|.|+||++.-.
T Consensus       483 ~~--------------------~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          483 GI--------------------NITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             CC--------------------SCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred             Cc--------------------eEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence            64                    599999999964   9999999999999998653

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-37  Score=332.46  Aligned_cols=384  Identities=13%  Similarity=0.194  Sum_probs=294.2

Q ss_pred             EEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEe-eccCCCeEEEEEcC-CCCeEEEeecCCeEEEEeecccccC
Q 038577           99 ILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTL-ADCNDKVTALNWSP-DSNYLLVGSKDLAVRLFYVKEKLKG  176 (860)
Q Consensus        99 ~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~s~-d~~~l~s~~~dg~v~vwd~~~~~~~  176 (860)
                      ..|+|+++.++++.     .|+..+ +       ++..+ .+|.+.|++++|+| ++++|++|+.||.|++||+......
T Consensus        33 ~~f~~~~~~~~~~~-----~w~~~g-~-------~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~   99 (437)
T 3gre_A           33 KEFGPIQEIVRSPN-----MGNLRG-K-------LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG   99 (437)
T ss_dssp             GGGCCCCCCCCCCC-----GGGCCC-C-------EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT
T ss_pred             hhcCCccccccccc-----cccccc-e-------EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC
Confidence            35788888887654     477443 3       46777 89999999999999 9999999999999999999873111


Q ss_pred             cccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeec---CCCCCCccccCCCCCCCCCCCcceeeeEE
Q 038577          177 IHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFS---GNDGKIDETMEDSEPPSPGTPERRVKKWG  253 (860)
Q Consensus       177 ~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (860)
                      .. .......+|...|.+++|+|++.     +|++++.||.|++||+.   .+..                  .......
T Consensus       100 ~~-~~~~~~~~h~~~v~~~~~~~~~~-----~l~s~s~dg~i~vwd~~~~~~~~~------------------~~~~~~~  155 (437)
T 3gre_A          100 EV-YSSSLTYDCSSTVTQITMIPNFD-----AFAVSSKDGQIIVLKVNHYQQESE------------------VKFLNCE  155 (437)
T ss_dssp             CC-CSCSEEEECSSCEEEEEECTTSS-----EEEEEETTSEEEEEEEEEEEETTE------------------EEEEEEE
T ss_pred             cc-cceeeeccCCCCEEEEEEeCCCC-----EEEEEeCCCEEEEEEeccccCCce------------------eeccccc
Confidence            10 11122236999999999999998     99999999999999995   2211                  0000111


Q ss_pred             eeeeccccC--CCCceEEEE--ecCCCCEEEEEEcCCeEEEEECCCceeEEEEee--cCceeEEEEEeeCCCEEEEEEcc
Q 038577          254 LLRKDDFSQ--APSKVTACD--YHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSI--SREKITTAVFNELGNWLVFGCAK  327 (860)
Q Consensus       254 ~~~~~~~~~--~~~~v~~~~--~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~~  327 (860)
                      ......+..  +...+.++.  +++++.++++++.||.|++||+.+++.+..+..  |...|.+++|+|+++.+++++.+
T Consensus       156 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d  235 (437)
T 3gre_A          156 CIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTR  235 (437)
T ss_dssp             EEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETT
T ss_pred             eeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCC
Confidence            111222222  566788888  668999999999999999999999999999988  78899999999999999998876


Q ss_pred             CCcEEEEEccCceEEEEec-CcccCeEEEEEcC----CCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeC
Q 038577          328 LGQLLVWEWRSESYILKQQ-GHYFDVNCLAYSP----DSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMAN  402 (860)
Q Consensus       328 ~g~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~  402 (860)
                       |.|++||+++++.+..+. .|...|.+++|+|    ++.++++|+.||.|++||+.+++.+..+.+|...+..+.|+|+
T Consensus       236 -g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  314 (437)
T 3gre_A          236 -GIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPI  314 (437)
T ss_dssp             -SCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCB
T ss_pred             -CeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccc
Confidence             999999999999988875 7888999996654    6789999999999999999999999999999999999999998


Q ss_pred             CCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcc---cC
Q 038577          403 NHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHE---GP  479 (860)
Q Consensus       403 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~---~~  479 (860)
                      ++.+    .+..+             ....+...+.+++++ +++++++++.|+ .|++||+.+++....+.+|.   ..
T Consensus       315 ~~~l----~~~~~-------------~~~~~~~~v~~l~~~-~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~  375 (437)
T 3gre_A          315 EKGL----EELNF-------------CGIRSLNALSTISVS-NDKILLTDEATS-SIVMFSLNELSSSKAVISPSRFSDV  375 (437)
T ss_dssp             CSSG----GGCCC-------------CCCCSGGGGCCEEEE-TTEEEEEEGGGT-EEEEEETTCGGGCEEEECC--CCCE
T ss_pred             cccc----cccee-------------cccccCCceEEEEEC-CceEEEecCCCC-eEEEEECCCcccceEEecccccCce
Confidence            7655    11110             011245578899999 789999999999 99999999999999988864   34


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeC--CCEEEEEeCCCeEEEEe
Q 038577          480 VHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPD--GRQLACSTLDGQIHFWD  547 (860)
Q Consensus       480 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd  547 (860)
                      +....++++..+++..        |+............|...|++++|+++  +.+|++|+.||.|++|+
T Consensus       376 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          376 FIPTQVTANLTMLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEEEEETTEEEEEEE--------CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             EEEEEeecceEEEEEe--------cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            5556666665555444        222233333344569999999999998  78999999999999995

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=4.5e-35  Score=317.87  Aligned_cols=322  Identities=21%  Similarity=0.336  Sum_probs=285.2

Q ss_pred             EEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEc
Q 038577          134 IRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIA  213 (860)
Q Consensus       134 ~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~  213 (860)
                      ...+.+|.+.+.. ++++++++|++|+.||.|++||+.++      .....+.+|.+.|.++.|+  +.     .+++++
T Consensus       111 ~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~------~~~~~~~~h~~~v~~~~~~--~~-----~l~s~~  176 (445)
T 2ovr_B          111 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTG------KCLRTLVGHTGGVWSSQMR--DN-----IIISGS  176 (445)
T ss_dssp             CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTC------CEEEECCCCSSCEEEEEEE--TT-----EEEEEE
T ss_pred             eEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCC------cEEEEEcCCCCCEEEEEec--CC-----EEEEEe
Confidence            4678899887533 35557899999999999999999988      6678889999999999997  44     899999


Q ss_pred             CCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEEC
Q 038577          214 RDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQM  293 (860)
Q Consensus       214 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~  293 (860)
                      .||+|++||+.++..                            ...+.+|...|.++.++  ++.+++|+.||.|++||+
T Consensus       177 ~dg~i~vwd~~~~~~----------------------------~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~  226 (445)
T 2ovr_B          177 TDRTLKVWNAETGEC----------------------------IHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDI  226 (445)
T ss_dssp             TTSCEEEEETTTTEE----------------------------EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEES
T ss_pred             CCCeEEEEECCcCcE----------------------------EEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEEC
Confidence            999999999987522                            23345788899999995  568999999999999999


Q ss_pred             CCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcE
Q 038577          294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKV  373 (860)
Q Consensus       294 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  373 (860)
                      .+++.+..+..+...+.++.+  +++.+++++.+ |.|++||+.+++.+..+.+|...|.+++|  ++..+++++.||.|
T Consensus       227 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i  301 (445)
T 2ovr_B          227 ETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYD-FMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSI  301 (445)
T ss_dssp             SSCCEEEEEECCSSCEEEEEE--CSSCEEEEETT-SCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCE
T ss_pred             CCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCC-CEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeE
Confidence            999999999999999999998  78888888765 99999999999999999999999999999  78899999999999


Q ss_pred             EEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCC--CCCcEEEEEECCCCCEEEE
Q 038577          374 KVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTP--SSRQFVSLASDQSGEVICA  451 (860)
Q Consensus       374 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~  451 (860)
                      ++||+.+++.+..+.+|...+.++.++  ++++++++.||.|++||+.+++....+..+  +...+.+++++  ++++++
T Consensus       302 ~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s  377 (445)
T 2ovr_B          302 RVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVIT  377 (445)
T ss_dssp             EEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEE
T ss_pred             EEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEE
Confidence            999999999999999999999988874  569999999999999999999988888753  55678888885  689999


Q ss_pred             EecCCCeEEEEECCCCceEEEe-----cCcccCeEEEEEcCCCCEEEEEeCCCc----EEEEEccCC
Q 038577          452 GTLDSFEIFVWSMKTGRLLDIL-----SGHEGPVHGLVFSPTNATLASSSWDKT----VRLWNVFEG  509 (860)
Q Consensus       452 ~~~~~~~i~v~d~~~~~~~~~~-----~~h~~~v~~l~~s~~~~~l~s~~~dg~----i~iwd~~~~  509 (860)
                      ++.|+ .|++||+.+++.+..+     .+|.+.|.+++|+|++.++++++.||+    |.+||+...
T Consensus       378 ~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          378 SSDDG-TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EETTS-EEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             EeCCC-eEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence            99998 9999999999999888     578899999999999999999999998    999998754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.6e-35  Score=339.96  Aligned_cols=310  Identities=20%  Similarity=0.336  Sum_probs=253.3

Q ss_pred             eEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc-----eEEEEecCcccCeEEEEEcCCCCEEEEEeCCCc
Q 038577          298 CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE-----SYILKQQGHYFDVNCLAYSPDSQLLATGADDNK  372 (860)
Q Consensus       298 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  372 (860)
                      ....+..|.+.|++++|+|++..++++++.|+.|++|++.+.     .....+.+|...|.+++|+|++++|++|+.||.
T Consensus       374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~  453 (694)
T 3dm0_A          374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE  453 (694)
T ss_dssp             EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence            445688999999999999987544444455599999998753     455677899999999999999999999999999


Q ss_pred             EEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEee--CCCCCcEEEEEECCCC--CE
Q 038577          373 VKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFT--TPSSRQFVSLASDQSG--EV  448 (860)
Q Consensus       373 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~  448 (860)
                      |++||+.++.....+.+|...|.+++|+|++++|++++.|++|++||...........  ..+...+.+++++|++  ..
T Consensus       454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  533 (694)
T 3dm0_A          454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT  533 (694)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCE
T ss_pred             EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcce
Confidence            9999999999999999999999999999999999999999999999986544333222  2355679999999987  68


Q ss_pred             EEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEe
Q 038577          449 ICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR  528 (860)
Q Consensus       449 l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  528 (860)
                      +++++.|+ .|++||+++++....+.+|.+.|++++|+|++++|++++.||.|++||+.+++.+.. ..+...+.+++|+
T Consensus       534 l~s~s~d~-~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~-~~~~~~v~~~~~s  611 (694)
T 3dm0_A          534 IVSASWDK-TVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS-LEANSVIHALCFS  611 (694)
T ss_dssp             EEEEETTS-CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEEC-CBCSSCEEEEEEC
T ss_pred             EEEEeCCC-eEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE-ecCCCcEEEEEEc
Confidence            99999998 999999999999999999999999999999999999999999999999999875443 4456789999999


Q ss_pred             eCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEE
Q 038577          529 PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMY  608 (860)
Q Consensus       529 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw  608 (860)
                      |++.+|++++ ++.|++||+.+++.+..+..+........... .......+...+++++|||||++|++|+.||.|++|
T Consensus       612 p~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW  689 (694)
T 3dm0_A          612 PNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNS-GPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW  689 (694)
T ss_dssp             SSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC-----------------CCCCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             CCCcEEEEEc-CCCEEEEECCCCCChhhhcccccccccccccc-ccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEE
Confidence            9999888776 56699999999999888765432110000000 000001112247899999999999999999999999


Q ss_pred             ECC
Q 038577          609 DVA  611 (860)
Q Consensus       609 d~~  611 (860)
                      ++.
T Consensus       690 ~i~  692 (694)
T 3dm0_A          690 GIG  692 (694)
T ss_dssp             EC-
T ss_pred             ecc
Confidence            985

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=8.4e-35  Score=318.05  Aligned_cols=289  Identities=20%  Similarity=0.372  Sum_probs=251.4

Q ss_pred             eEEEEeecCcee-EEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038577          298 CIHLLSISREKI-TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVW  376 (860)
Q Consensus       298 ~~~~~~~~~~~i-~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  376 (860)
                      ....+..|...+ .++.  ++++.+++++.+ |.|++||+.+++.+..+.+|...|.+++|+|++ .+++|+.||.|++|
T Consensus       113 ~~~~l~~h~~~v~~~~~--~~~~~l~sgs~d-g~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw  188 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQ--FEDNYVITGADD-KMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW  188 (464)
T ss_dssp             EEEEEECCSSSCEEEEE--EETTEEEEEETT-SCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred             ceEEEcCCCCCcEEEEE--ECCCEEEEEcCC-CcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence            445677777765 4444  467788877765 999999999999999999999999999999988 99999999999999


Q ss_pred             ECCCCeeEEEeecCCCceEEEEEee--CCCEEEEEeCCCcEEEEEccccceeeE----------------------eeCC
Q 038577          377 TVSSGFCFVTFTEHTNAVTALHFMA--NNHSLLSASLDGTVRAWDLFRYRNFRT----------------------FTTP  432 (860)
Q Consensus       377 d~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~dg~i~~wd~~~~~~~~~----------------------~~~~  432 (860)
                      |+.+++.+..+.+|...|.+++|++  ++.++++++.||.|++||+.+......                      ....
T Consensus       189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (464)
T 3v7d_B          189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  268 (464)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred             ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence            9999999999999999999999984  778999999999999999987654321                      2223


Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcce
Q 038577          433 SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGS  512 (860)
Q Consensus       433 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  512 (860)
                      +...+.++  ++++.++++++.|+ .|++||+.+++.+..+.+|...|.+++|+|+++++++++.||.|++||+.+++..
T Consensus       269 ~~~~v~~~--~~~~~~l~~~~~d~-~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~  345 (464)
T 3v7d_B          269 HMASVRTV--SGHGNIVVSGSYDN-TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM  345 (464)
T ss_dssp             CSSCEEEE--EEETTEEEEEETTS-CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred             ccceEEEE--cCCCCEEEEEeCCC-eEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence            33344444  68899999999999 9999999999999999999999999999999999999999999999999999988


Q ss_pred             eEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecC
Q 038577          513 VESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSAD  592 (860)
Q Consensus       513 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  592 (860)
                      ..+..|...|.+++|+  +++|++++.||.|++||+.+++.........                     .+..++|+|+
T Consensus       346 ~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~---------------------~~~~~~~~~~  402 (464)
T 3v7d_B          346 YTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTN---------------------LSAITTFYVS  402 (464)
T ss_dssp             EEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTT---------------------CCCEEEEEEC
T ss_pred             EEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCC---------------------CccEEEEEeC
Confidence            8888999999999997  5799999999999999999988766664332                     3788999999


Q ss_pred             CCEEEEecCCCeEEEEECCCceEEE
Q 038577          593 GSYILAGGSSKYICMYDVADQVLLR  617 (860)
Q Consensus       593 g~~l~~~~~dg~v~vwd~~~~~~~~  617 (860)
                      +++|++++ ||.|++||+.+++++.
T Consensus       403 ~~~l~~~~-dg~i~iwd~~~g~~~~  426 (464)
T 3v7d_B          403 DNILVSGS-ENQFNIYNLRSGKLVH  426 (464)
T ss_dssp             SSEEEEEE-TTEEEEEETTTCCEEE
T ss_pred             CCEEEEec-CCeEEEEECCCCcEEe
Confidence            99999998 8999999999998775

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=9.6e-36  Score=315.62  Aligned_cols=311  Identities=17%  Similarity=0.182  Sum_probs=258.8

Q ss_pred             EeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce--EEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 038577          302 LSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES--YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVS  379 (860)
Q Consensus       302 ~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  379 (860)
                      +..+..+|.+++|+|+++.+++++.+ +.|++||+.+++  ....+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d-~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~   82 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNN-HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   82 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSS-SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCC-CEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence            44578899999999999999988765 999999999987  788888999999999999999999999999999999998


Q ss_pred             CCeeEEE--eecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccce---eeEeeCCCCCcEEEEEECCCCCEEEEEec
Q 038577          380 SGFCFVT--FTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRN---FRTFTTPSSRQFVSLASDQSGEVICAGTL  454 (860)
Q Consensus       380 ~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  454 (860)
                      +++....  +..|...|.+++|+|+++++++++.|+.+++||+.....   ...+..++...+.+++++|+++++++++.
T Consensus        83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  162 (372)
T 1k8k_C           83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC  162 (372)
T ss_dssp             TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence            8875444  467899999999999999999999999999999988763   44555666778999999999999999999


Q ss_pred             CCCeEEEEEC------------------CCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc
Q 038577          455 DSFEIFVWSM------------------KTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF  516 (860)
Q Consensus       455 ~~~~i~v~d~------------------~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  516 (860)
                      ++ .|++||+                  ..++.+..+.+|...|.+++|+|++++|++++.||.|++||+.+++....+.
T Consensus       163 dg-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  241 (372)
T 1k8k_C          163 DF-KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA  241 (372)
T ss_dssp             TS-CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE
T ss_pred             CC-CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc
Confidence            98 9999995                  4678899999999999999999999999999999999999999998888888


Q ss_pred             ccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCC--Cc--eeEEEecccccCCCccc----------cccc-------cc
Q 038577          517 PHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLN--GE--LMYTIEGRRDISGGRLM----------TDRR-------SA  575 (860)
Q Consensus       517 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~--~~~~~~~~~~~~~~~~~----------~~~~-------~~  575 (860)
                      .|..++.+++|+|++++++++ .|+.|++|++.+  ++  .+..+..+.........          ....       ..
T Consensus       242 ~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (372)
T 1k8k_C          242 SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAG  320 (372)
T ss_dssp             CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CC
T ss_pred             cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccc
Confidence            899999999999999988888 899999999988  53  22222211100000000          0000       11


Q ss_pred             cccCCCCcEEEEEEe-cCC---CEEEEecCCCeEEEEECCCceE
Q 038577          576 ANSSSGKCFTTLCYS-ADG---SYILAGGSSKYICMYDVADQVL  615 (860)
Q Consensus       576 ~~~~~~~~i~~l~~s-~~g---~~l~~~~~dg~v~vwd~~~~~~  615 (860)
                      ....|...|++++|. ++|   ++|++++.||.|++||+.+++.
T Consensus       321 ~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~  364 (372)
T 1k8k_C          321 LDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES  364 (372)
T ss_dssp             CSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred             ccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence            123667789999966 677   9999999999999999987653

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-36  Score=328.00  Aligned_cols=360  Identities=10%  Similarity=0.115  Sum_probs=274.7

Q ss_pred             EEcCCCCeEEEeecCCeEEEEeecccccCcccccceEe-ecCCCcEEEEEEcc-CCCCCccceEEEEcCCccEEEeeecC
Q 038577          148 NWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLL-LGHRDSVVGCFFSV-DKKTDKVNRIYTIARDCYMFSWGFSG  225 (860)
Q Consensus       148 ~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~-~~h~~~i~~~~~~~-~~~~~~~~~l~s~~~dg~i~~w~~~~  225 (860)
                      .|+|+++.+++++      .|+...       .....+ .+|.+.|.+++|+| ++.     +|++++.||+|++||+.+
T Consensus        34 ~f~~~~~~~~~~~------~w~~~g-------~~~~~~~~~h~~~V~~~~~s~~~~~-----~l~s~s~dg~v~vwd~~~   95 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGNLRG-------KLIATLMENEPNSITSSAVSPGETP-----YLITGSDQGVIKIWNLKE   95 (437)
T ss_dssp             GGCCCCCCCCCCC------GGGCCC-------CEEEEECTTTTSCEEEEEEECSSSC-----EEEEEETTSEEEEEEHHH
T ss_pred             hcCCccccccccc------cccccc-------eEEeeeccCCCCceEEEEECCCCCC-----EEEEecCCceEEEeECcc
Confidence            3677777777665      377443       355666 88999999999999 998     999999999999999876


Q ss_pred             CCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECC---CceeEEEE
Q 038577          226 NDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMP---DFVCIHLL  302 (860)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~---~~~~~~~~  302 (860)
                      .....                    .+   .......|...|.+++|+|+++.+++++.||.|++||+.   +++.....
T Consensus        96 ~~~~~--------------------~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  152 (437)
T 3gre_A           96 IIVGE--------------------VY---SSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFL  152 (437)
T ss_dssp             HHTTC--------------------CC---SCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEE
T ss_pred             cccCc--------------------cc---ceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecc
Confidence            21100                    00   001111477899999999999999999999999999984   44444443


Q ss_pred             eecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEE--EcCCCCEEEEEeCCCcEEEEECCC
Q 038577          303 SISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLA--YSPDSQLLATGADDNKVKVWTVSS  380 (860)
Q Consensus       303 ~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~--~s~~~~~l~~~~~dg~i~iwd~~~  380 (860)
                      ..+  .+..+.+++++                             +...+.++.  +++++.++++++.||.|++||+.+
T Consensus       153 ~~~--~i~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  201 (437)
T 3gre_A          153 NCE--CIRKINLKNFG-----------------------------KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT  201 (437)
T ss_dssp             EEE--EEEEEEGGGGS-----------------------------SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT
T ss_pred             ccc--eeEEEEccCcc-----------------------------cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence            333  34444443322                             344566666  678999999999999999999999


Q ss_pred             CeeEEEeec--CCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEEC----CCCCEEEEEec
Q 038577          381 GFCFVTFTE--HTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASD----QSGEVICAGTL  454 (860)
Q Consensus       381 ~~~~~~~~~--~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~  454 (860)
                      ++.+..+..  |...|.+++|+|++++|++++.||.|++||+++++....+...+...+.+++++    +++.++++++.
T Consensus       202 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~  281 (437)
T 3gre_A          202 LERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSS  281 (437)
T ss_dssp             CCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEEST
T ss_pred             CeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcC
Confidence            999999988  899999999999999999999999999999999999888876777789999655    56889999999


Q ss_pred             CCCeEEEEECCCCceEEEecC--------------------------cccCeEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 038577          455 DSFEIFVWSMKTGRLLDILSG--------------------------HEGPVHGLVFSPTNATLASSSWDKTVRLWNVFE  508 (860)
Q Consensus       455 ~~~~i~v~d~~~~~~~~~~~~--------------------------h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~  508 (860)
                      |+ .|++||+++++.+..+.+                          |...|++++|+ ++++|++++.||.|++||+.+
T Consensus       282 dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~  359 (437)
T 3gre_A          282 KT-FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNE  359 (437)
T ss_dssp             TE-EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTC
T ss_pred             CC-cEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCC
Confidence            98 999999999998877764                          45568889999 778999999999999999999


Q ss_pred             CcceeEEcccC---CCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEE
Q 038577          509 GKGSVESFPHT---HDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFT  585 (860)
Q Consensus       509 ~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  585 (860)
                      ++....+..|.   .......++++..+++..        |+...+........|.+                    .|+
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~h~~--------------------~I~  411 (437)
T 3gre_A          360 LSSSKAVISPSRFSDVFIPTQVTANLTMLLRK--------MKRTSTHSVDDSLYHHD--------------------IIN  411 (437)
T ss_dssp             GGGCEEEECC--CCCEEEEEEEETTEEEEEEE--------CC-------------CC--------------------CEE
T ss_pred             cccceEEecccccCceEEEEEeecceEEEEEe--------cccccccccCccccccc--------------------cee
Confidence            98777776643   345556666665555444        33333344444444543                    699


Q ss_pred             EEEEecC--CCEEEEecCCCeEEEEE
Q 038577          586 TLCYSAD--GSYILAGGSSKYICMYD  609 (860)
Q Consensus       586 ~l~~s~~--g~~l~~~~~dg~v~vwd  609 (860)
                      +++|+++  +.+|++|+.||.|++|+
T Consensus       412 ~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          412 SISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             eEeeeccCCceEEEEEcCCceEEEeC
Confidence            9999998  78999999999999995

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=9.1e-35  Score=317.79  Aligned_cols=319  Identities=18%  Similarity=0.300  Sum_probs=273.0

Q ss_pred             ccccCCCCce-EEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEc
Q 038577          258 DDFSQAPSKV-TACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEW  336 (860)
Q Consensus       258 ~~~~~~~~~v-~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~  336 (860)
                      ..+.+|...+ .++.+  +++++++|+.||.|++||+.+++.+..+..|...|.+++|++++ .+++++. ||.|++||+
T Consensus       115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~-dg~i~vwd~  190 (464)
T 3v7d_B          115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGST-DRTVRVWDI  190 (464)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEET-TSCEEEEET
T ss_pred             EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeC-CCCEEEEEC
Confidence            3455676664 55555  56799999999999999999999999999999999999999988 6666655 499999999


Q ss_pred             cCceEEEEecCcccCeEEEEEc--CCCCEEEEEeCCCcEEEEECCCCe-----------------------eEEEeecCC
Q 038577          337 RSESYILKQQGHYFDVNCLAYS--PDSQLLATGADDNKVKVWTVSSGF-----------------------CFVTFTEHT  391 (860)
Q Consensus       337 ~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~iwd~~~~~-----------------------~~~~~~~~~  391 (860)
                      .+++.+..+.+|...|.+++|+  +++.++++|+.||.|++||+.++.                       ....+.+|.
T Consensus       191 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (464)
T 3v7d_B          191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM  270 (464)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred             CCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence            9999999999999999999998  578899999999999999998765                       255677888


Q ss_pred             CceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEE
Q 038577          392 NAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLD  471 (860)
Q Consensus       392 ~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~  471 (860)
                      ..+.++  +++++++++++.||.|++||+.+++....+.. +...+.+++++|+++++++++.|+ .|++||+++++.+.
T Consensus       271 ~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~dg-~i~vwd~~~~~~~~  346 (464)
T 3v7d_B          271 ASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG-HTDRIYSTIYDHERKRCISASMDT-TIRIWDLENGELMY  346 (464)
T ss_dssp             SCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEETTTTEEEEEETTS-CEEEEETTTTEEEE
T ss_pred             ceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCCCEEEEEEcCCCCEEEEEeCCC-cEEEEECCCCcEEE
Confidence            888887  57788999999999999999999988887764 456899999999999999999999 99999999999999


Q ss_pred             EecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCC
Q 038577          472 ILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNG  551 (860)
Q Consensus       472 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  551 (860)
                      .+.+|...|.+++|+  ++++++++.||.|++||+.+..... ...+...+..++|+|+++++++++ ||.|++||+.++
T Consensus       347 ~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g  422 (464)
T 3v7d_B          347 TLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF-SYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG  422 (464)
T ss_dssp             EECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE-EEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred             EEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceee-eecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence            999999999999997  5899999999999999999876433 335777888899999999999998 899999999999


Q ss_pred             ceeEE-EecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEE
Q 038577          552 ELMYT-IEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYD  609 (860)
Q Consensus       552 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd  609 (860)
                      +.+.. +..+.                    ..|.+++|+ ++.++++++.||.+.+|-
T Consensus       423 ~~~~~~~~~~~--------------------~~v~~v~~~-~~~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          423 KLVHANILKDA--------------------DQIWSVNFK-GKTLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             CEEESCTTTTC--------------------SEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             cEEehhhccCC--------------------CcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence            98876 33332                    369999997 344555666777665553

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=8e-36  Score=314.29  Aligned_cols=313  Identities=15%  Similarity=0.173  Sum_probs=248.4

Q ss_pred             EEEeecCceeEEEEEeeCCCEEEEEEcc---CCcEEEEEccCceEEEEe-cCcccCeEEEEEcCC---CCEEEEEeCCCc
Q 038577          300 HLLSISREKITTAVFNELGNWLVFGCAK---LGQLLVWEWRSESYILKQ-QGHYFDVNCLAYSPD---SQLLATGADDNK  372 (860)
Q Consensus       300 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~---~g~i~v~d~~~~~~~~~~-~~~~~~v~~~~~s~~---~~~l~~~~~dg~  372 (860)
                      .....|...|.+++|+|++..++++++.   +|.|++||+.+++..... .+|...|.+++|+|+   +.++++|+.||.
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence            3456788999999999999888877764   799999999988765443 478899999999999   699999999999


Q ss_pred             EEEEECCCCe-eEEEeecCCCceEEEEE------eeCCCEEEEEeCCCcEEEEEccccc-eeeEeeCCC---CCcEEEEE
Q 038577          373 VKVWTVSSGF-CFVTFTEHTNAVTALHF------MANNHSLLSASLDGTVRAWDLFRYR-NFRTFTTPS---SRQFVSLA  441 (860)
Q Consensus       373 i~iwd~~~~~-~~~~~~~~~~~v~~i~~------~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~---~~~~~~~~  441 (860)
                      |++||+.++. .+..+.+|...|.++.|      +|+++.|++++.||.|++||+.+++ ....+....   ...+.+++
T Consensus        92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~  171 (357)
T 3i2n_A           92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVA  171 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEE
T ss_pred             EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEE
Confidence            9999999888 88889999999999965      6789999999999999999999886 555554332   33678887


Q ss_pred             ----ECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcC---CCCEEEEEeCCCcEEEEEccCCcceeE
Q 038577          442 ----SDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSP---TNATLASSSWDKTVRLWNVFEGKGSVE  514 (860)
Q Consensus       442 ----~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~---~~~~l~s~~~dg~i~iwd~~~~~~~~~  514 (860)
                          ++|++.++++++.++ .|++||+++++.... ..|...|.+++|+|   ++.++++++.||.|++||+.+++....
T Consensus       172 ~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  249 (357)
T 3i2n_A          172 FGNAYNQEERVVCAGYDNG-DIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG  249 (357)
T ss_dssp             EECCCC-CCCEEEEEETTS-EEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE
T ss_pred             EEeccCCCCCEEEEEccCC-eEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc
Confidence                789999999999998 999999999887554 55899999999999   999999999999999999988765544


Q ss_pred             Ec-----ccCCCeEEEEEeeCCC-EEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEE
Q 038577          515 SF-----PHTHDVLTVVYRPDGR-QLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLC  588 (860)
Q Consensus       515 ~~-----~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~  588 (860)
                      ..     .|...|++++|+|+++ +|++++.||.|++||+.++............. +.............+...|++++
T Consensus       250 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~v~~~~  328 (357)
T 3i2n_A          250 FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEM-GVAGSVSLLQNVTLSTQPISSLD  328 (357)
T ss_dssp             EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCC-CCCCEEEEEEEEECCSSCEEEEE
T ss_pred             eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcc-ccccccceeeccccCCCCeeEEE
Confidence            43     7999999999999998 89999999999999998664332111100000 00000001111122344799999


Q ss_pred             EecCCCEEE-EecCCCeEEEEECCCceE
Q 038577          589 YSADGSYIL-AGGSSKYICMYDVADQVL  615 (860)
Q Consensus       589 ~s~~g~~l~-~~~~dg~v~vwd~~~~~~  615 (860)
                      |+|+|++|+ +++.||.|++||+.+.++
T Consensus       329 ~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          329 WSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             ECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             EcCCCCeEEEEecCCCcEEEEECCCccc
Confidence            999999998 899999999999987654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.9e-35  Score=316.22  Aligned_cols=292  Identities=15%  Similarity=0.208  Sum_probs=261.1

Q ss_pred             eeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCce------eEEEEeecCceeEEEEEeeC----C---CEEE
Q 038577          256 RKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFV------CIHLLSISREKITTAVFNEL----G---NWLV  322 (860)
Q Consensus       256 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~------~~~~~~~~~~~i~~~~~s~~----~---~~l~  322 (860)
                      ....+.+|...|.+++|+|  ++|++++.||.|++|++.+++      ....+..+...|.+++|+|+    +   +.++
T Consensus         8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~   85 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   85 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence            3456778999999999999  899999999999999999887      78888899999999999999    8   8888


Q ss_pred             EEEccCCcEEEEEccCceE-----EEEecCc-----ccCeEEEEEc----CCCCE-EEEEeCCCcEEEEECCC------C
Q 038577          323 FGCAKLGQLLVWEWRSESY-----ILKQQGH-----YFDVNCLAYS----PDSQL-LATGADDNKVKVWTVSS------G  381 (860)
Q Consensus       323 ~~~~~~g~i~v~d~~~~~~-----~~~~~~~-----~~~v~~~~~s----~~~~~-l~~~~~dg~i~iwd~~~------~  381 (860)
                      +++.+ |.|++|++.++..     ...+..|     ...|.+++|+    |+++. |++++.||.|++||+.+      +
T Consensus        86 s~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  164 (397)
T 1sq9_A           86 TTSFS-GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  164 (397)
T ss_dssp             EEETT-SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EEcCC-CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence            88765 9999999998876     7778888     5899999999    99999 99999999999999988      6


Q ss_pred             eeEE-----Ee-------ecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCC--C---CCcEEEEEECC
Q 038577          382 FCFV-----TF-------TEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTP--S---SRQFVSLASDQ  444 (860)
Q Consensus       382 ~~~~-----~~-------~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~---~~~~~~~~~~~  444 (860)
                      ..+.     .+       ..|...|.+++|+|++ .+++++.||.|++||+.+++....+...  +   ...+.+++++|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~  243 (397)
T 1sq9_A          165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP  243 (397)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred             ceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECC
Confidence            5555     66       4488999999999999 9999999999999999999888888761  3   56899999999


Q ss_pred             CCCEEEEEecC---CCeEEEEECCCCceEEEecC-------------cccCeEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 038577          445 SGEVICAGTLD---SFEIFVWSMKTGRLLDILSG-------------HEGPVHGLVFSPTNATLASSSWDKTVRLWNVFE  508 (860)
Q Consensus       445 ~~~~l~~~~~~---~~~i~v~d~~~~~~~~~~~~-------------h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~  508 (860)
                      ++.++++++.+   + .|++||+++++.+..+.+             |...|.+++|+|++++|++++.||.|++||+.+
T Consensus       244 ~~~~l~~~~~d~~~g-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  322 (397)
T 1sq9_A          244 QGSLLAIAHDSNSFG-CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT  322 (397)
T ss_dssp             STTEEEEEEEETTEE-EEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             CCCEEEEEecCCCCc-eEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            99999999998   7 999999999999999998             999999999999999999999999999999999


Q ss_pred             CcceeEEc------cc---------------CCCeEEEEEeeCC----------CEEEEEeCCCeEEEEeCCCCc
Q 038577          509 GKGSVESF------PH---------------THDVLTVVYRPDG----------RQLACSTLDGQIHFWDPLNGE  552 (860)
Q Consensus       509 ~~~~~~~~------~~---------------~~~v~~~~~s~~~----------~~l~~~~~dg~i~iwd~~~~~  552 (860)
                      ++....+.      .|               ...|++++|+|++          ++|++++.||.|++|++.+|+
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          323 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             CceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            98777777      67               8999999999998          799999999999999998764

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.4e-35  Score=309.00  Aligned_cols=298  Identities=12%  Similarity=0.181  Sum_probs=268.4

Q ss_pred             eccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEc
Q 038577          257 KDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEW  336 (860)
Q Consensus       257 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~  336 (860)
                      ...+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+|+++.+++++.+ |.|++||+
T Consensus        25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-g~i~iwd~  103 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSAD-YSIKLWDV  103 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT-TEEEEEET
T ss_pred             cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCC-CeEEEEEC
Confidence            34567899999999999999999999999999999999999999999999999999999999999988776 99999999


Q ss_pred             cCceEEEEecCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCe-----------eEEEeecCCC--ceEEEE
Q 038577          337 RSESYILKQQGHYFDVNCLAYSPDSQLLATGADD-----NKVKVWTVSSGF-----------CFVTFTEHTN--AVTALH  398 (860)
Q Consensus       337 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~-----------~~~~~~~~~~--~v~~i~  398 (860)
                      .+++.+..+. +...+.+++|+|+++++++++.+     |.|++||+..+.           ....+..|..  .+.+++
T Consensus       104 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (369)
T 3zwl_B          104 SNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG  182 (369)
T ss_dssp             TTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE
T ss_pred             CCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE
Confidence            9999888877 88899999999999999999999     999999987543           3344555666  999999


Q ss_pred             EeeCCCEEEEEeCCCcEEEEEccc-cceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcc
Q 038577          399 FMANNHSLLSASLDGTVRAWDLFR-YRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHE  477 (860)
Q Consensus       399 ~~~~~~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~  477 (860)
                      |+|+++.+++++.||.|++||+.+ .+....+.. +...+.+++++|++.++++++.++ .|++||+++++.+..+. +.
T Consensus       183 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~-~i~v~d~~~~~~~~~~~-~~  259 (369)
T 3zwl_B          183 WSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL-HEKSISDMQFSPDLTYFITSSRDT-NSFLVDVSTLQVLKKYE-TD  259 (369)
T ss_dssp             ECGGGCEEEEEETTSEEEEEETTTTTEEEEEEEC-CSSCEEEEEECTTSSEEEEEETTS-EEEEEETTTCCEEEEEE-CS
T ss_pred             EcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEec-CCCceeEEEECCCCCEEEEecCCc-eEEEEECCCCceeeeec-CC
Confidence            999999999999999999999998 555555554 456899999999999999999998 99999999999998888 78


Q ss_pred             cCeEEEEEcCCCCEEEEEeCCC--------------cEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeE
Q 038577          478 GPVHGLVFSPTNATLASSSWDK--------------TVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQI  543 (860)
Q Consensus       478 ~~v~~l~~s~~~~~l~s~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  543 (860)
                      ..+.+++|+|+++++++++.++              .+++||+.+++....+..|...|++++|+|++++|++++.||.|
T Consensus       260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v  339 (369)
T 3zwl_B          260 CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFI  339 (369)
T ss_dssp             SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeE
Confidence            8999999999999999999988              89999999999888888999999999999999999999999999


Q ss_pred             EEEeCCCCceeEEEec
Q 038577          544 HFWDPLNGELMYTIEG  559 (860)
Q Consensus       544 ~iwd~~~~~~~~~~~~  559 (860)
                      ++|++.++.....+..
T Consensus       340 ~iw~~~~~~~~~~~~~  355 (369)
T 3zwl_B          340 RLHHFEKSYFDFKYDV  355 (369)
T ss_dssp             EEEEECHHHHTCCCHH
T ss_pred             EEEECccccchhHHHH
Confidence            9999988765554443

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.5e-35  Score=312.11  Aligned_cols=293  Identities=12%  Similarity=0.231  Sum_probs=246.2

Q ss_pred             CCCceeEEEEeecCceeEEEEEeeCC-CEEEEEEccCCcEEEEEccCceEEEEec--CcccCeEEEEEcC-CCCEEEEEe
Q 038577          293 MPDFVCIHLLSISREKITTAVFNELG-NWLVFGCAKLGQLLVWEWRSESYILKQQ--GHYFDVNCLAYSP-DSQLLATGA  368 (860)
Q Consensus       293 ~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~g~i~v~d~~~~~~~~~~~--~~~~~v~~~~~s~-~~~~l~~~~  368 (860)
                      .........+..|...|.+++|+|++ +.+++++.+ |.|++||+.++.....+.  +|...|.+++|+| ++++|++++
T Consensus        60 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  138 (383)
T 3ei3_B           60 LKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKG-GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS  138 (383)
T ss_dssp             HTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBT-SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE
T ss_pred             ccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCC-CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe
Confidence            34556677788899999999999999 777777665 999999999887776664  6999999999999 789999999


Q ss_pred             CCCcEEEEECCCCeeEEEeecC---CCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCC
Q 038577          369 DDNKVKVWTVSSGFCFVTFTEH---TNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQS  445 (860)
Q Consensus       369 ~dg~i~iwd~~~~~~~~~~~~~---~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (860)
                      .|+.|++||+.+ .....+..+   ...|.+++|+|+++++++++.|+.|++||+ +++....+.. +...+.+++++|+
T Consensus       139 ~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~-h~~~v~~~~~~~~  215 (383)
T 3ei3_B          139 IRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKL-HKAKVTHAEFNPR  215 (383)
T ss_dssp             TTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEEC-SSSCEEEEEECSS
T ss_pred             CCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEecc-CCCcEEEEEECCC
Confidence            999999999985 555555444   478999999999999999999999999999 5666666654 4468999999999


Q ss_pred             CC-EEEEEecCCCeEEEEECCC----CceEEEecCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEccCCcceeEEcccC
Q 038577          446 GE-VICAGTLDSFEIFVWSMKT----GRLLDILSGHEGPVHGLVFSP-TNATLASSSWDKTVRLWNVFEGKGSVESFPHT  519 (860)
Q Consensus       446 ~~-~l~~~~~~~~~i~v~d~~~----~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  519 (860)
                      +. ++++++.|+ .|++||+++    +..+..+ +|...|.+++|+| ++++|++++.|+.|++||+.+++....+..|.
T Consensus       216 ~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  293 (383)
T 3ei3_B          216 CDWLMATSSVDA-TVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP  293 (383)
T ss_dssp             CTTEEEEEETTS-EEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC
T ss_pred             CCCEEEEEeCCC-EEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc
Confidence            99 899999998 999999998    6667666 6999999999999 99999999999999999999887655554332


Q ss_pred             -----------------CCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCC
Q 038577          520 -----------------HDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGK  582 (860)
Q Consensus       520 -----------------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  582 (860)
                                       ..+..++|+|++++  +++.||.|++||+.+++.+..+.++..                  ..
T Consensus       294 ~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~------------------~~  353 (383)
T 3ei3_B          294 HRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNA------------------AG  353 (383)
T ss_dssp             BCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTB------------------CS
T ss_pred             ccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCC------------------Cc
Confidence                             34455667777766  777899999999999999999987532                  12


Q ss_pred             cEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 038577          583 CFTTLCYSADGSYILAGGSSKYICMYDVAD  612 (860)
Q Consensus       583 ~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~  612 (860)
                      .+..++|+|+|++|++++ ||.|++||+++
T Consensus       354 ~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          354 IISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             CCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             eEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            477889999999999997 99999999875

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-34  Score=297.16  Aligned_cols=291  Identities=18%  Similarity=0.239  Sum_probs=260.9

Q ss_pred             eccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEc
Q 038577          257 KDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEW  336 (860)
Q Consensus       257 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~  336 (860)
                      ...+.+|...|.+++| |+++++++++.||.|++||+.+++....+..+...+.+++|+|+++.+++++.+ |.+++|++
T Consensus        11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~~~~~   88 (313)
T 3odt_A           11 SATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKD-TMINGVPL   88 (313)
T ss_dssp             EEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETT-SCEEEEET
T ss_pred             HHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCC-CeEEEEEe
Confidence            3456789999999999 999999999999999999999999999999999999999999999999998876 99999998


Q ss_pred             cCc---eEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEee-CCCEEEEEeCC
Q 038577          337 RSE---SYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMA-NNHSLLSASLD  412 (860)
Q Consensus       337 ~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~d  412 (860)
                      ...   +....+.+|...|.+++|  +++.+++++.||.|++||  .+.....+..|...+.++.+.| ++..+++++.|
T Consensus        89 ~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  164 (313)
T 3odt_A           89 FATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASAD  164 (313)
T ss_dssp             TCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETT
T ss_pred             eecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECC
Confidence            654   556777889999999999  577999999999999999  7888888999999999999998 88999999999


Q ss_pred             CcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEE
Q 038577          413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATL  492 (860)
Q Consensus       413 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l  492 (860)
                      |.+++||  ..+....+...+...+.+++++|++. +++++.++ .|++||+++++.+..+.+|.++|++++|+|++ .+
T Consensus       165 ~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l  239 (313)
T 3odt_A          165 KTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDG-LIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DI  239 (313)
T ss_dssp             SCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTS-EEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CE
T ss_pred             CCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCC-eEEEEECCchhhhhhhhcCCceEEEEEEecCC-CE
Confidence            9999999  45566667766778899999999999 88888888 99999999999999999999999999999999 58


Q ss_pred             EEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEec
Q 038577          493 ASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEG  559 (860)
Q Consensus       493 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  559 (860)
                      ++++.||.|++||+.+++....+..|...|.+++|+|+++ +++++.||.|++||+.+++.......
T Consensus       240 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~~  305 (313)
T 3odt_A          240 VSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDEI  305 (313)
T ss_dssp             EEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC----
T ss_pred             EEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhhh
Confidence            8999999999999999988888888999999999999998 66789999999999998877655443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-34  Score=296.45  Aligned_cols=292  Identities=16%  Similarity=0.212  Sum_probs=257.4

Q ss_pred             CceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 038577          295 DFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVK  374 (860)
Q Consensus       295 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  374 (860)
                      ..+....+..|...|.+++| ++++.+++++.+ |.|++||+.++.....+..|...|.+++|+|+++++++++.||.|+
T Consensus         7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~d-g~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~   84 (313)
T 3odt_A            7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRD-GTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN   84 (313)
T ss_dssp             CCEEEEEECCCSSCEEEEEE-EETTEEEEEETT-SEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcC-CcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence            34677888999999999999 999999988766 9999999999999988899999999999999999999999999999


Q ss_pred             EEECCCC---eeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECC-CCCEEE
Q 038577          375 VWTVSSG---FCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQ-SGEVIC  450 (860)
Q Consensus       375 iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~  450 (860)
                      +|++...   +....+..|...|.++.|  +++.+++++.||.|++||  ..+....+.. +...+.++.+.| ++..++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~  159 (313)
T 3odt_A           85 GVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQA-HNASVWDAKVVSFSENKFL  159 (313)
T ss_dssp             EEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEEC-CSSCEEEEEEEETTTTEEE
T ss_pred             EEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEeccc-CCCceeEEEEccCCCCEEE
Confidence            9998754   667788899999999999  567999999999999999  5555555554 455788888877 999999


Q ss_pred             EEecCCCeEEEEECCCCceEEEecC-cccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEee
Q 038577          451 AGTLDSFEIFVWSMKTGRLLDILSG-HEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRP  529 (860)
Q Consensus       451 ~~~~~~~~i~v~d~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  529 (860)
                      +++.++ .|++||  .++....+.. |...|.+++|+|++. +++++.||.|++||+.+++....+..|...|++++|+|
T Consensus       160 ~~~~d~-~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  235 (313)
T 3odt_A          160 TASADK-TIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLP  235 (313)
T ss_dssp             EEETTS-CEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT
T ss_pred             EEECCC-CEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEec
Confidence            999998 999999  5566777777 999999999999998 99999999999999999988888888999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEE
Q 038577          530 DGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYD  609 (860)
Q Consensus       530 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd  609 (860)
                      ++ .|++++.||.|++||+.+++.+..+..|..                    .|.+++|+|+|+ +++++.||.|++||
T Consensus       236 ~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--------------------~i~~~~~~~~~~-~~~~~~dg~i~iw~  293 (313)
T 3odt_A          236 NG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI--------------------SIWSVDCMSNGD-IIVGSSDNLVRIFS  293 (313)
T ss_dssp             TS-CEEEEETTSEEEEECTTTCCEEEEEECSSS--------------------CEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred             CC-CEEEEecCCEEEEEECCCCceeEEEeccCc--------------------eEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence            99 588999999999999999999999988764                    599999999999 56789999999999


Q ss_pred             CCCceEEEEE
Q 038577          610 VADQVLLRRF  619 (860)
Q Consensus       610 ~~~~~~~~~~  619 (860)
                      +.+++.+...
T Consensus       294 ~~~~~~~~~~  303 (313)
T 3odt_A          294 QEKSRWASED  303 (313)
T ss_dssp             SCGGGCCC--
T ss_pred             CCCCceeehh
Confidence            9998766543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.2e-35  Score=314.18  Aligned_cols=289  Identities=19%  Similarity=0.251  Sum_probs=247.4

Q ss_pred             EeecCceeEEEEEeeC---C-CEEEEEEccCCcEEEEEccCceEEEEecC-----cccCeEEEEEcCC----CCEEEEEe
Q 038577          302 LSISREKITTAVFNEL---G-NWLVFGCAKLGQLLVWEWRSESYILKQQG-----HYFDVNCLAYSPD----SQLLATGA  368 (860)
Q Consensus       302 ~~~~~~~i~~~~~s~~---~-~~l~~~~~~~g~i~v~d~~~~~~~~~~~~-----~~~~v~~~~~s~~----~~~l~~~~  368 (860)
                      ...|...|.+++|+|+   + ..+++++.+ +.|++||+.++..+..+..     |...|.+++|+|+    +.+|++|+
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~-~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGS-NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEET-TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCC-CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            3468889999999984   4 445555554 7999999998876655543     5578999999999    67999999


Q ss_pred             CCCcEEEEECCCCeeEEEeecCCCceEEEEEee-CCCEEEEEeCCCcEEEEEccccceeeEee--CCCCCcEEEEEECCC
Q 038577          369 DDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMA-NNHSLLSASLDGTVRAWDLFRYRNFRTFT--TPSSRQFVSLASDQS  445 (860)
Q Consensus       369 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~~~~~~~~~~~~  445 (860)
                      .||.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.||.|++||+.+++....+.  ..+...+.+++++|+
T Consensus        93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  172 (366)
T 3k26_A           93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL  172 (366)
T ss_dssp             TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred             CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence            999999999999999999999999999999999 89999999999999999999998887774  456678999999999


Q ss_pred             CCEEEEEecCCCeEEEEECCCCceEEEec----------------------------CcccCeEEEEEcCCCCEEEEEeC
Q 038577          446 GEVICAGTLDSFEIFVWSMKTGRLLDILS----------------------------GHEGPVHGLVFSPTNATLASSSW  497 (860)
Q Consensus       446 ~~~l~~~~~~~~~i~v~d~~~~~~~~~~~----------------------------~h~~~v~~l~~s~~~~~l~s~~~  497 (860)
                      +.++++++.|+ .|++||+++++....+.                            +|...|.+++|+  ++++++++.
T Consensus       173 ~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~  249 (366)
T 3k26_A          173 GEKIMSCGMDH-SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSC  249 (366)
T ss_dssp             SSEEEEEETTS-CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECS
T ss_pred             CCEEEEecCCC-CEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEec
Confidence            99999999998 99999999876544333                            399999999998  779999999


Q ss_pred             CCcEEEEEccCCcc--------------eeEEcccCCCeEEEEEeeC--CCEEEEEeCCCeEEEEeCCCCcee----EEE
Q 038577          498 DKTVRLWNVFEGKG--------------SVESFPHTHDVLTVVYRPD--GRQLACSTLDGQIHFWDPLNGELM----YTI  557 (860)
Q Consensus       498 dg~i~iwd~~~~~~--------------~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~----~~~  557 (860)
                      ||.|++||+.+...              ......|...|++++|+|+  +++|++++.||.|++||+.+++..    ..+
T Consensus       250 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  329 (366)
T 3k26_A          250 ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTL  329 (366)
T ss_dssp             SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEE
T ss_pred             CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEE
Confidence            99999999987754              4555678889999999999  999999999999999999988643    355


Q ss_pred             ecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 038577          558 EGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVAD  612 (860)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~  612 (860)
                      .+|..                  ...|++++|+|+|++|++++.||.|++||+.+
T Consensus       330 ~~~~~------------------~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          330 THHKC------------------GAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             CCTTC------------------CSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             ccccc------------------CCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            55521                  23699999999999999999999999999853

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.8e-34  Score=328.44  Aligned_cols=295  Identities=21%  Similarity=0.288  Sum_probs=238.6

Q ss_pred             EEEEEeeccCCCeEEEEEcCCC-CeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEE
Q 038577          132 ELIRTLADCNDKVTALNWSPDS-NYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIY  210 (860)
Q Consensus       132 ~~~~~~~~h~~~v~~l~~s~d~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~  210 (860)
                      .+...+.+|.+.|++++|+|++ ++|++|+.|++|++|++... ..........+.+|...|.+++|+|+++     +|+
T Consensus       373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~-~~~~~~~~~~~~~h~~~v~~v~~s~~g~-----~l~  446 (694)
T 3dm0_A          373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKD-DKAYGVAQRRLTGHSHFVEDVVLSSDGQ-----FAL  446 (694)
T ss_dssp             EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCS-TTCSCEEEEEEECCSSCEEEEEECTTSS-----EEE
T ss_pred             chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCC-CcccccccceecCCCCcEEEEEECCCCC-----EEE
Confidence            4566789999999999999875 78999999999999999765 1111122344555665555555555555     455


Q ss_pred             EEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEE
Q 038577          211 TIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGL  290 (860)
Q Consensus       211 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~  290 (860)
                      +++.|                                                                      |.|++
T Consensus       447 sgs~D----------------------------------------------------------------------g~v~v  456 (694)
T 3dm0_A          447 SGSWD----------------------------------------------------------------------GELRL  456 (694)
T ss_dssp             EEETT----------------------------------------------------------------------SEEEE
T ss_pred             EEeCC----------------------------------------------------------------------CcEEE
Confidence            55544                                                                      45555


Q ss_pred             EECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEe---cCcccCeEEEEEcCCC--CEEE
Q 038577          291 YQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ---QGHYFDVNCLAYSPDS--QLLA  365 (860)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~---~~~~~~v~~~~~s~~~--~~l~  365 (860)
                      ||+.++.....+..|...|.+++|+|+++.+++++.+ +.|++||..........   .+|...|.+++|+|++  ..++
T Consensus       457 wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D-~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~  535 (694)
T 3dm0_A          457 WDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRD-RTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV  535 (694)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETT-SCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEE
T ss_pred             EECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCC-CEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEE
Confidence            5555555666677888899999999999999988776 99999998765444332   4688899999999987  5899


Q ss_pred             EEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCC
Q 038577          366 TGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQS  445 (860)
Q Consensus       366 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (860)
                      +++.|+.|++||+.+++....+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+..  ...+.+++|+|+
T Consensus       536 s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~  613 (694)
T 3dm0_A          536 SASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA--NSVIHALCFSPN  613 (694)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC--SSCEEEEEECSS
T ss_pred             EEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC--CCcEEEEEEcCC
Confidence            999999999999999999999999999999999999999999999999999999999988766654  347899999999


Q ss_pred             CCEEEEEecCCCeEEEEECCCCceEEEecCcc-------------------cCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 038577          446 GEVICAGTLDSFEIFVWSMKTGRLLDILSGHE-------------------GPVHGLVFSPTNATLASSSWDKTVRLWNV  506 (860)
Q Consensus       446 ~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~-------------------~~v~~l~~s~~~~~l~s~~~dg~i~iwd~  506 (860)
                      +.+++++..+  .|++||+++++.+..+..+.                   ..+++++|+|+|++|++|+.||.|++||+
T Consensus       614 ~~~l~~~~~~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i  691 (694)
T 3dm0_A          614 RYWLCAATEH--GIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI  691 (694)
T ss_dssp             SSEEEEEETT--EEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             CcEEEEEcCC--CEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence            9998887654  69999999998887765332                   13789999999999999999999999998


Q ss_pred             c
Q 038577          507 F  507 (860)
Q Consensus       507 ~  507 (860)
                      .
T Consensus       692 ~  692 (694)
T 3dm0_A          692 G  692 (694)
T ss_dssp             -
T ss_pred             c
Confidence            5

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.6e-34  Score=306.22  Aligned_cols=287  Identities=14%  Similarity=0.161  Sum_probs=251.0

Q ss_pred             CCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCce--eEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc
Q 038577          262 QAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFV--CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE  339 (860)
Q Consensus       262 ~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~  339 (860)
                      .|...|.+++|+|+++++++++.+|.|++|++.+++  ....+..|...|.+++|+|+++.+++++.+ |.|++||+.++
T Consensus         6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-g~i~vwd~~~~   84 (372)
T 1k8k_C            6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD-RNAYVWTLKGR   84 (372)
T ss_dssp             SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT-SCEEEEEEETT
T ss_pred             ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCC-CeEEEEECCCC
Confidence            467789999999999999999999999999999887  888899999999999999999999988766 99999999988


Q ss_pred             eEEEEe--cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCee----EEEeecCCCceEEEEEeeCCCEEEEEeCCC
Q 038577          340 SYILKQ--QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFC----FVTFTEHTNAVTALHFMANNHSLLSASLDG  413 (860)
Q Consensus       340 ~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg  413 (860)
                      +.....  ..|...|.+++|+|+++++++++.||.|++||+..+..    ......|...|.+++|+|+++++++++.||
T Consensus        85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  164 (372)
T 1k8k_C           85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF  164 (372)
T ss_dssp             EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC
Confidence            755443  67889999999999999999999999999999988762    333366899999999999999999999999


Q ss_pred             cEEEEEcc------------------ccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC
Q 038577          414 TVRAWDLF------------------RYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG  475 (860)
Q Consensus       414 ~i~~wd~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~  475 (860)
                      .+++||+.                  .++....+. .+...+.+++++|++.++++++.++ .|++||+++++.+..+..
T Consensus       165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~  242 (372)
T 1k8k_C          165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSRVAWVSHDS-TVCLADADKKMAVATLAS  242 (372)
T ss_dssp             CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSEEEEEETTT-EEEEEEGGGTTEEEEEEC
T ss_pred             CEEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCCCCEEEEEeCCC-EEEEEECCCCceeEEEcc
Confidence            99999964                  455555554 4456899999999999999999998 999999999999999999


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEEccC--Cc--------------------------------ce------eEE
Q 038577          476 HEGPVHGLVFSPTNATLASSSWDKTVRLWNVFE--GK--------------------------------GS------VES  515 (860)
Q Consensus       476 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~--~~--------------------------------~~------~~~  515 (860)
                      |..+|.+++|+|++++++++ .|+.|++|++.+  +.                                ..      ..+
T Consensus       243 ~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (372)
T 1k8k_C          243 ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL  321 (372)
T ss_dssp             SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred             CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccc
Confidence            99999999999999988887 899999999987  31                                00      222


Q ss_pred             -cccCCCeEEEEEe-eCC---CEEEEEeCCCeEEEEeCCCCc
Q 038577          516 -FPHTHDVLTVVYR-PDG---RQLACSTLDGQIHFWDPLNGE  552 (860)
Q Consensus       516 -~~~~~~v~~~~~s-~~~---~~l~~~~~dg~i~iwd~~~~~  552 (860)
                       .+|...|++++|. ++|   .+|++++.||.|++||+.+++
T Consensus       322 ~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          322 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             cccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence             3799999999976 566   999999999999999987654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=7.8e-35  Score=307.92  Aligned_cols=287  Identities=16%  Similarity=0.228  Sum_probs=249.6

Q ss_pred             ccCCCCceEEEEecCC----CCEEEEEEcCCeEEEEECCCceeEEEEee-----cCceeEEEEEeeC----CCEEEEEEc
Q 038577          260 FSQAPSKVTACDYHRG----LDMVVVGFSNGVFGLYQMPDFVCIHLLSI-----SREKITTAVFNEL----GNWLVFGCA  326 (860)
Q Consensus       260 ~~~~~~~v~~~~~~~~----~~~l~~~~~~g~i~~~~~~~~~~~~~~~~-----~~~~i~~~~~s~~----~~~l~~~~~  326 (860)
                      ..+|...|.+++|+|+    ...+++++.++.|++|++.+++.+..+..     +...+.+++|+|+    +..+++++.
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   93 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS   93 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence            3478899999999994    56788888888999999998887766664     3467999999999    557777766


Q ss_pred             cCCcEEEEEccCceEEEEecCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeEEEe---ecCCCceEEEEEeeC
Q 038577          327 KLGQLLVWEWRSESYILKQQGHYFDVNCLAYSP-DSQLLATGADDNKVKVWTVSSGFCFVTF---TEHTNAVTALHFMAN  402 (860)
Q Consensus       327 ~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~i~~~~~  402 (860)
                      + |.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.||.|++||+.+++.+..+   ..|...|.+++|+|+
T Consensus        94 d-g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  172 (366)
T 3k26_A           94 R-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL  172 (366)
T ss_dssp             T-CEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred             C-CEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence            5 9999999999999999999999999999999 9999999999999999999999999888   689999999999999


Q ss_pred             CCEEEEEeCCCcEEEEEccccceeeEeeC---------------------------CCCCcEEEEEECCCCCEEEEEecC
Q 038577          403 NHSLLSASLDGTVRAWDLFRYRNFRTFTT---------------------------PSSRQFVSLASDQSGEVICAGTLD  455 (860)
Q Consensus       403 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~l~~~~~~  455 (860)
                      +++|++++.||.|++||+.+++....+..                           .+...+.+++++  ++++++++.+
T Consensus       173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d  250 (366)
T 3k26_A          173 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCE  250 (366)
T ss_dssp             SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSS
T ss_pred             CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecC
Confidence            99999999999999999987654433221                           155678889998  7799999999


Q ss_pred             CCeEEEEECCCCce--------------EEEecCcccCeEEEEEcCC--CCEEEEEeCCCcEEEEEccCCccee----EE
Q 038577          456 SFEIFVWSMKTGRL--------------LDILSGHEGPVHGLVFSPT--NATLASSSWDKTVRLWNVFEGKGSV----ES  515 (860)
Q Consensus       456 ~~~i~v~d~~~~~~--------------~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~----~~  515 (860)
                      + .|++||+.+++.              +..+.+|...|.+++|+|+  +++|++++.||.|++||+.+++...    .+
T Consensus       251 ~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  329 (366)
T 3k26_A          251 N-AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTL  329 (366)
T ss_dssp             S-EEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEE
T ss_pred             C-EEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEE
Confidence            8 999999988754              7888899999999999999  9999999999999999999876432    45


Q ss_pred             ccc--CCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCC
Q 038577          516 FPH--THDVLTVVYRPDGRQLACSTLDGQIHFWDPLN  550 (860)
Q Consensus       516 ~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  550 (860)
                      ..|  ...|++++|+|++++|++++.||.|++||+.+
T Consensus       330 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          330 THHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             cccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            555  79999999999999999999999999999853

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.3e-34  Score=311.39  Aligned_cols=358  Identities=17%  Similarity=0.206  Sum_probs=258.1

Q ss_pred             cCCeEEEEeecccccCcccccceEeecCCCcEEEEEEcc-CCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCC
Q 038577          161 KDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSV-DKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEP  239 (860)
Q Consensus       161 ~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~  239 (860)
                      .++.+++|+++..      .....+.+|.+.|.+++|+| +++     +|++++.||.|++|++.++........     
T Consensus        21 ~~~~~~v~~~~~~------~~~~~~~~h~~~v~~~~~s~~~~~-----~l~~~~~dg~i~iw~~~~~~~~~~~~~-----   84 (408)
T 4a11_B           21 AESTRRVLGLELN------KDRDVERIHGGGINTLDIEPVEGR-----YMLSGGSDGVIVLYDLENSSRQSYYTC-----   84 (408)
T ss_dssp             HHHHHHHHTEEEC------TTEEECCCCSSCEEEEEECTTTCC-----EEEEEETTSCEEEEECCCCSSSSCEEE-----
T ss_pred             ccCcceeeccccC------cceeeeeccCCcEEEEEEecCCCC-----EEEEEcCCCeEEEEECCCCcccceEec-----
Confidence            3456788888877      56778889999999999999 998     999999999999999987643111000     


Q ss_pred             CCCCCCcceeeeEEeeeeccccCCCCceEEEEecC-CCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCC
Q 038577          240 PSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHR-GLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELG  318 (860)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  318 (860)
                                .............|...|.+++|+| ++.++++++.+|.|++||+.+++....+. +...+.++.+++.+
T Consensus        85 ----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~  153 (408)
T 4a11_B           85 ----------KAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVS  153 (408)
T ss_dssp             ----------CEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSC
T ss_pred             ----------cccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCC
Confidence                      0000011222345888999999999 77899999999999999999998888776 56688999999854


Q ss_pred             ---CEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCe-eEEEe------
Q 038577          319 ---NWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQ-LLATGADDNKVKVWTVSSGF-CFVTF------  387 (860)
Q Consensus       319 ---~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~------  387 (860)
                         ..+++++.+ |.|++||+.++..+..+..|...|.+++|+|+++ .+++++.||.|++||++++. ....+      
T Consensus       154 ~~~~~~~~~~~~-~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  232 (408)
T 4a11_B          154 TKHCLVAVGTRG-PKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGK  232 (408)
T ss_dssp             SSCCEEEEEESS-SSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTC
T ss_pred             CCCcEEEEEcCC-CeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccc
Confidence               477777655 9999999999999999999999999999999998 58999999999999998765 33333      


Q ss_pred             ---------ecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCC----CCCcEEEEEECCCCCEEEEEec
Q 038577          388 ---------TEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTP----SSRQFVSLASDQSGEVICAGTL  454 (860)
Q Consensus       388 ---------~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~  454 (860)
                               ..|...|.+++|+|++++|++++.||.|++||+.+++........    .............+..+++++.
T Consensus       233 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (408)
T 4a11_B          233 KSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY  312 (408)
T ss_dssp             SCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE
T ss_pred             cceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEec
Confidence                     568899999999999999999999999999999987765443321    1111222222334455666666


Q ss_pred             CCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEee-CCCE
Q 038577          455 DSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRP-DGRQ  533 (860)
Q Consensus       455 ~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~  533 (860)
                      ++ .|++||+.+++.+..+.+|.+.|++++|+|++++|++++.||.|++||+.+.+.........   ....+.| ....
T Consensus       313 ~~-~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~  388 (408)
T 4a11_B          313 GS-TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETT---TKSQLNPAFEDA  388 (408)
T ss_dssp             TT-EEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--------------------------
T ss_pred             CC-EEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceE---ecccccccccee
Confidence            77 99999999999999999999999999999999999999999999999999887544332221   1122333 3344


Q ss_pred             EEEEeCCCeEEEEeCCC
Q 038577          534 LACSTLDGQIHFWDPLN  550 (860)
Q Consensus       534 l~~~~~dg~i~iwd~~~  550 (860)
                      +.+.+.++.+++|+...
T Consensus       389 ~~~~~~~~~~~~W~~~~  405 (408)
T 4a11_B          389 WSSSDEEGGTSAWSHPQ  405 (408)
T ss_dssp             -----------------
T ss_pred             ecccCccCceeecCCcc
Confidence            55677789999998653

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=4.8e-35  Score=314.66  Aligned_cols=357  Identities=16%  Similarity=0.194  Sum_probs=254.9

Q ss_pred             CCeEEEEECCCCcEEeeccCCccCeeEEEEcC-CCCEEEEEcCCCcEEEEEcccCeEEEEee--------------cCCc
Q 038577           31 GNRVSVTDLIKSKTVTLPVESSSNICRIAVSP-DGTFLLTVDENQRCHFINLHCHVVLHRVR--------------FKYP   95 (860)
Q Consensus        31 ~~~i~v~d~~~~~~~~~~~~h~~~v~~va~sp-dg~~la~~~~d~~i~vwd~~~~~~~~~~~--------------~~~~   95 (860)
                      +..+++|++..++....+.+|.+.|++++|+| ++++||+++.||.|++||+.+++....+.              |...
T Consensus        22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (408)
T 4a11_B           22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS  101 (408)
T ss_dssp             HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred             cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence            34577888888888888889999999999999 99999999999999999999876554443              8889


Q ss_pred             eeEEEECC-CCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCC---CeEEEeecCCeEEEEee
Q 038577           96 VNAILFSP-NGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDS---NYLLVGSKDLAVRLFYV  170 (860)
Q Consensus        96 v~~~~fsp-dg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~---~~l~s~~~dg~v~vwd~  170 (860)
                      |.+++|+| ++.+|+++ .++.|++||+.+++.       ...+ .+...+.++.|+|.+   .++++++.|+.|++||+
T Consensus       102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  173 (408)
T 4a11_B          102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-------ADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL  173 (408)
T ss_dssp             EEEEEECTTCTTCEEEEETTSEEEEEETTTTEE-------EEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEES
T ss_pred             EEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc-------ceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeC
Confidence            99999999 77788888 689999999998762       3444 378889999999854   59999999999999999


Q ss_pred             cccccCcccccceEeecCCCcEEEEEEccCCCCCccce-EEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCccee
Q 038577          171 KEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNR-IYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRV  249 (860)
Q Consensus       171 ~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~-l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (860)
                      .++      .....+.+|...|.+++|+|++.     + +++++.||.|++||+................          
T Consensus       174 ~~~------~~~~~~~~~~~~v~~~~~~~~~~-----~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----------  232 (408)
T 4a11_B          174 KSG------SCSHILQGHRQEILAVSWSPRYD-----YILATASADSRVKLWDVRRASGCLITLDQHNGK----------  232 (408)
T ss_dssp             SSS------CCCEEECCCCSCEEEEEECSSCT-----TEEEEEETTSCEEEEETTCSSCCSEECCTTTTC----------
T ss_pred             CCc------ceeeeecCCCCcEEEEEECCCCC-----cEEEEEcCCCcEEEEECCCCCcccccccccccc----------
Confidence            987      56788899999999999999998     5 8899999999999998754321111000000          


Q ss_pred             eeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecC-----ceeEEEEEeeCCCEEEEE
Q 038577          250 KKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISR-----EKITTAVFNELGNWLVFG  324 (860)
Q Consensus       250 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~  324 (860)
                        ...........+...|.+++|+|+++++++++.||.|++||+.+++.......+.     ..+........+..++++
T Consensus       233 --~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (408)
T 4a11_B          233 --KSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFV  310 (408)
T ss_dssp             --SCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEE
T ss_pred             --cceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEE
Confidence              0000122335678899999999999999999999999999999877654433221     122222223334555555


Q ss_pred             EccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEee-CC
Q 038577          325 CAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMA-NN  403 (860)
Q Consensus       325 ~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~  403 (860)
                      +.+ +.+++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++|++.+++.+.....+...   ..+.+ ..
T Consensus       311 ~~~-~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~  386 (408)
T 4a11_B          311 PYG-STIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFE  386 (408)
T ss_dssp             EET-TEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------------------------
T ss_pred             ecC-CEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccccccc
Confidence            554 99999999999999999999999999999999999999999999999999998877655433222   22333 33


Q ss_pred             CEEEEEeCCCcEEEEEccc
Q 038577          404 HSLLSASLDGTVRAWDLFR  422 (860)
Q Consensus       404 ~~l~s~~~dg~i~~wd~~~  422 (860)
                      ..+.+.+.++.+++|+...
T Consensus       387 ~~~~~~~~~~~~~~W~~~~  405 (408)
T 4a11_B          387 DAWSSSDEEGGTSAWSHPQ  405 (408)
T ss_dssp             -------------------
T ss_pred             eeecccCccCceeecCCcc
Confidence            4556777899999998643

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1e-35  Score=315.78  Aligned_cols=306  Identities=15%  Similarity=0.146  Sum_probs=238.8

Q ss_pred             EEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc--eEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 038577          301 LLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE--SYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTV  378 (860)
Q Consensus       301 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  378 (860)
                      ....+...|.+++|+|+|+++++++.+ +.|++||+.++  +....+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d-~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTAT-NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK   84 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSS-SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCC-CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence            345567799999999999999887665 99999999988  677777899999999999999999999999999999999


Q ss_pred             CCCe---eEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccce---eeEeeCCCCCcEEEEEECCCCCEEEEE
Q 038577          379 SSGF---CFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRN---FRTFTTPSSRQFVSLASDQSGEVICAG  452 (860)
Q Consensus       379 ~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~  452 (860)
                      .++.   ....+..|...|.+++|+|++++|++++.|+.|++||+.+++.   ...+..++...+.+++++|++++++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~  164 (377)
T 3dwl_C           85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG  164 (377)
T ss_dssp             ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred             CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence            9877   6777888999999999999999999999999999999998773   666666577899999999999999999


Q ss_pred             ecCCCeEEEEECC------------------CCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcc---
Q 038577          453 TLDSFEIFVWSMK------------------TGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKG---  511 (860)
Q Consensus       453 ~~~~~~i~v~d~~------------------~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~---  511 (860)
                      +.|+ .|++||+.                  .++.+..+ +|.+.|.+++|+|++++|++++.||.|++||+.+++.   
T Consensus       165 ~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~  242 (377)
T 3dwl_C          165 CADR-KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR  242 (377)
T ss_dssp             ESSS-CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEE
T ss_pred             eCCC-EEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcce
Confidence            9998 99999985                  35566667 8999999999999999999999999999999999887   


Q ss_pred             -eeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCc--eeEEEecccccCC-----------Ccccc-------
Q 038577          512 -SVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGE--LMYTIEGRRDISG-----------GRLMT-------  570 (860)
Q Consensus       512 -~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~-----------~~~~~-------  570 (860)
                       ...+..|...|.+++|+|++++|++++.++.+ +|+.....  ....+........           .....       
T Consensus       243 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (377)
T 3dwl_C          243 ALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALR  321 (377)
T ss_dssp             ECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC----------
T ss_pred             eeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccccccccc
Confidence             56677899999999999999999999877766 66655322  1111211111000           00000       


Q ss_pred             ------------ccccccccCCCCcEEEEEEecCC-C---EEEEecCCCeEEEEEC
Q 038577          571 ------------DRRSAANSSSGKCFTTLCYSADG-S---YILAGGSSKYICMYDV  610 (860)
Q Consensus       571 ------------~~~~~~~~~~~~~i~~l~~s~~g-~---~l~~~~~dg~v~vwd~  610 (860)
                                  .........|...|+++++.++. .   .|++++.||.|++||+
T Consensus       322 ~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          322 STFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             ---------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             ccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                        00111223478899999976544 3   6999999999999985

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-36  Score=317.89  Aligned_cols=317  Identities=11%  Similarity=0.069  Sum_probs=256.0

Q ss_pred             ecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCC
Q 038577          186 LGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPS  265 (860)
Q Consensus       186 ~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (860)
                      +.-...|.+++|+|||+     ++++++.|++|+  |....                               ..+.+|..
T Consensus        12 ~~~~~~v~sv~~SpDG~-----~iASas~D~TV~--d~~~~-------------------------------~~l~gh~~   53 (588)
T 2j04_A           12 KEFEDWKNNLTWARDGT-----LYLTTFPDISIG--QPKYA-------------------------------KDINCNSK   53 (588)
T ss_dssp             CCCSSSSCCEEECTTSC-----EEEECSSSEEEE--EECCC-------------------------------SCCSSBGG
T ss_pred             hHhhccEEEEEECCCCC-----EEEEEcCCceee--ccccc-------------------------------ceecCCCc
Confidence            34567899999999999     999999999999  64432                               22257888


Q ss_pred             ceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEe
Q 038577          266 KVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ  345 (860)
Q Consensus       266 ~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~  345 (860)
                      .|.+++|+|+|       .++.+.+|+.... ....+ .+...|.+++|||+|..+++++.+ |.+++||.+.  .+..+
T Consensus        54 ~v~~V~FsPdg-------~~~~~~~~~~~~~-~~~~~-~~~~~V~~vawSPdG~~LAs~s~d-g~V~iwd~~~--~l~~l  121 (588)
T 2j04_A           54 NLFHVKEFPLE-------FENKLDFELAQQN-GLLNS-QPVCYPRVCKPSPIDDWMAVLSNN-GNVSVFKDNK--MLTNL  121 (588)
T ss_dssp             GTEEEEEECCC-------CCCTTTTSCCCSS-CSSTT-SCSCCEEEEEECSSSSCEEEEETT-SCEEEEETTE--EEEEC
T ss_pred             cEEEEEECCCC-------CcceEEEEeCCCc-eEeec-CCCCcEEEEEECCCCCEEEEEeCC-CcEEEEeCCc--eeeec
Confidence            99999999998       4555555544221 22222 336789999999999999999877 9999999544  55555


Q ss_pred             cCccc-----CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-------eEEEe----ecCCCceEEEEEeeCCCEEEEE
Q 038577          346 QGHYF-----DVNCLAYSPDSQLLATGADDNKVKVWTVSSGF-------CFVTF----TEHTNAVTALHFMANNHSLLSA  409 (860)
Q Consensus       346 ~~~~~-----~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~----~~~~~~v~~i~~~~~~~~l~s~  409 (860)
                      . |..     .+.+++|||||++||+|+.||+|++||+.++.       .+.++    .+|...|.+++|+|+|  ++++
T Consensus       122 ~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laas  198 (588)
T 2j04_A          122 D-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAA  198 (588)
T ss_dssp             C-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEE
T ss_pred             c-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEE
Confidence            5 665     49999999999999999999999999999875       35666    6677899999999999  8899


Q ss_pred             eCCCcEEEEEcccccee---eEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEE-
Q 038577          410 SLDGTVRAWDLFRYRNF---RTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVF-  485 (860)
Q Consensus       410 ~~dg~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~-  485 (860)
                      +.|+++++||+.+....   +.+...+...|.+++|+  |..+++++ ++ .|++||+.+++......+|...|.+++| 
T Consensus       199 s~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~-tIkLWd~~~~~~~~~~~gh~~~V~~va~~  274 (588)
T 2j04_A          199 LSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PG-YVHKIDLKNYSISSLKTGSLENFHIIPLN  274 (588)
T ss_dssp             ETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SS-EEEEEETTTTEEEEEECSCCSCCCEEEET
T ss_pred             eCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CC-eEEEEECCCCeEEEEEcCCCceEEEEEee
Confidence            99999999999887742   44544566789999999  68888887 45 9999999988875555489999999999 


Q ss_pred             -cCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccC
Q 038577          486 -SPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDIS  564 (860)
Q Consensus       486 -s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  564 (860)
                       +|++..+++++.||+ ++|...                .++++||+..+++.  |+++++|+...+. +..+.+ ..  
T Consensus       275 ~s~d~~~La~a~edG~-klw~~d----------------~~~~spd~~l~a~~--d~~v~lW~~~g~~-l~~~~~-~~--  331 (588)
T 2j04_A          275 HEKESTILLMSNKTSY-KVLLED----------------ELHVTADNIIAPYL--EKKFKKWSTIWNE-FNNYET-TL--  331 (588)
T ss_dssp             TCSSCEEEEECSSCEE-EEEESS----------------SEEEECCCSSHHHH--HHHHHHTTTTTTS-SSSSCC-EE--
T ss_pred             eCCCCCEEEEEcCCCC-EEEeec----------------cEEECCCceEEEEc--CCEEEEEECCCCc-eeeecc-ce--
Confidence             999999999999999 999986                26699999988775  9999999985443 334444 21  


Q ss_pred             CCccccccccccccCCCCcEEEEEEecCCCEEEEec
Q 038577          565 GGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGG  600 (860)
Q Consensus       565 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~  600 (860)
                                        .|.+++|||||+.+|+++
T Consensus       332 ------------------~I~~va~SPdG~~lA~~~  349 (588)
T 2j04_A          332 ------------------VIHGISLSPDGYSIAIVY  349 (588)
T ss_dssp             ------------------EEEEEEECTTSSEEEEEE
T ss_pred             ------------------EEEEEEECCCCCEEEEEE
Confidence                              489999999999999886

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=4.1e-34  Score=303.88  Aligned_cols=283  Identities=18%  Similarity=0.191  Sum_probs=241.3

Q ss_pred             cccCCCCceEEEEecCCC-CEEEEEEcCCeEEEEECCCceeEEEEe--ecCceeEEEEEee-CCCEEEEEEccCCcEEEE
Q 038577          259 DFSQAPSKVTACDYHRGL-DMVVVGFSNGVFGLYQMPDFVCIHLLS--ISREKITTAVFNE-LGNWLVFGCAKLGQLLVW  334 (860)
Q Consensus       259 ~~~~~~~~v~~~~~~~~~-~~l~~~~~~g~i~~~~~~~~~~~~~~~--~~~~~i~~~~~s~-~~~~l~~~~~~~g~i~v~  334 (860)
                      .+.+|...|.+++|+|++ +++++|+.||.|++||+.+++....+.  .+...|.+++|+| +++.+++++.+ +.|++|
T Consensus        68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-~~i~iw  146 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR-GATTLR  146 (383)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT-TEEEEE
T ss_pred             eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC-CEEEEE
Confidence            456788999999999999 999999999999999999888877766  5888999999999 56777776655 999999


Q ss_pred             EccCceEEEEec---CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCC-EEEEEe
Q 038577          335 EWRSESYILKQQ---GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNH-SLLSAS  410 (860)
Q Consensus       335 d~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~  410 (860)
                      |+.+.. ...+.   .|...|.+++|+|++++|++++.||.|++||+ +++.+..+..|...|.+++|+|+++ .+++++
T Consensus       147 d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  224 (383)
T 3ei3_B          147 DFSGSV-IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSS  224 (383)
T ss_dssp             ETTSCE-EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEE
T ss_pred             ECCCCc-eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEe
Confidence            999644 44443   34478999999999999999999999999999 5788889999999999999999998 899999


Q ss_pred             CCCcEEEEEccc----cceeeEeeCCCCCcEEEEEECC-CCCEEEEEecCCCeEEEEECCCCceEEEecCcc--------
Q 038577          411 LDGTVRAWDLFR----YRNFRTFTTPSSRQFVSLASDQ-SGEVICAGTLDSFEIFVWSMKTGRLLDILSGHE--------  477 (860)
Q Consensus       411 ~dg~i~~wd~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~--------  477 (860)
                      .|+.|++||+.+    ......+  .+...+.+++|+| ++.++++++.|+ .|++||+++++....+.+|.        
T Consensus       225 ~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~  301 (383)
T 3ei3_B          225 VDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRN-EIRVYSSYDWSKPDQIIIHPHRQFQHLT  301 (383)
T ss_dssp             TTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSS-EEEEEETTBTTSCSEEEECCBCCCTTSC
T ss_pred             CCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCC-cEEEEECCCCcccccccccccccccccc
Confidence            999999999998    5555555  3567899999999 999999999998 99999999988776666543        


Q ss_pred             ---------cCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcc--cCCCeEEEEEeeCCCEEEEEeCCCeEEEE
Q 038577          478 ---------GPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFP--HTHDVLTVVYRPDGRQLACSTLDGQIHFW  546 (860)
Q Consensus       478 ---------~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  546 (860)
                               +.+..++|+|++++  +++.||.|++||+.+++....+..  +...+..++|+|++++|++++ ||.|++|
T Consensus       302 ~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw  378 (383)
T 3ei3_B          302 PIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIW  378 (383)
T ss_dssp             CCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEE
T ss_pred             ceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEE
Confidence                     33445666777766  777899999999999987777765  567788889999999999997 9999999


Q ss_pred             eCCC
Q 038577          547 DPLN  550 (860)
Q Consensus       547 d~~~  550 (860)
                      |+++
T Consensus       379 ~~~~  382 (383)
T 3ei3_B          379 NRED  382 (383)
T ss_dssp             ECC-
T ss_pred             ecCC
Confidence            9864

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.3e-34  Score=303.78  Aligned_cols=284  Identities=19%  Similarity=0.272  Sum_probs=238.9

Q ss_pred             eEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecC-cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 038577          309 ITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQG-HYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTF  387 (860)
Q Consensus       309 i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  387 (860)
                      +.++.|+  +..+++++.+ +.|++||+.+++....... |...|.+++|+|++++|++|+.||.|++||+.+++.+..+
T Consensus        96 ~~~~~~s--~~~l~~~~~d-~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  172 (401)
T 4aez_A           96 LNLLDWS--NLNVVAVALE-RNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM  172 (401)
T ss_dssp             CBCEEEC--TTSEEEEEET-TEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             EEEEeec--CCCEEEEECC-CeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEe
Confidence            3445555  4567766655 9999999999988777755 7889999999999999999999999999999999999999


Q ss_pred             ecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCC
Q 038577          388 TEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTG  467 (860)
Q Consensus       388 ~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~  467 (860)
                      ..|...|.+++|+  ++.+++++.||.|++||+............+...+.+++++|++.++++++.|+ .|++||++++
T Consensus       173 ~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-~v~iwd~~~~  249 (401)
T 4aez_A          173 AGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDN-VVQIWDARSS  249 (401)
T ss_dssp             CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTCS
T ss_pred             cCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC-eEEEccCCCC
Confidence            9999999999994  569999999999999999854443333344567899999999999999999998 9999999999


Q ss_pred             ceEEEecCcccCeEEEEEcCCC-CEEEEEe--CCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEe--CCCe
Q 038577          468 RLLDILSGHEGPVHGLVFSPTN-ATLASSS--WDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACST--LDGQ  542 (860)
Q Consensus       468 ~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~  542 (860)
                      +.+..+.+|...|.+++|+|++ .++++++  .|+.|++||+.+++.... ..+...+.+++|+|+++++++++  .||.
T Consensus       250 ~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~g~~dg~  328 (401)
T 4aez_A          250 IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNT-VDAGSQVTSLIWSPHSKEIMSTHGFPDNN  328 (401)
T ss_dssp             SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEE-EECSSCEEEEEECSSSSEEEEEECTTTCE
T ss_pred             CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEE-EeCCCcEEEEEECCCCCeEEEEeecCCCc
Confidence            9999999999999999999976 4566655  799999999999875444 45778899999999999999954  8999


Q ss_pred             EEEEeCCCCceeEE--EecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEE
Q 038577          543 IHFWDPLNGELMYT--IEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRF  619 (860)
Q Consensus       543 i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~  619 (860)
                      |++||+.+++....  +.+|..                    .|.+++|+|+|++|++++.||.|++|++.+++.+...
T Consensus       329 i~v~~~~~~~~~~~~~~~~h~~--------------------~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          329 LSIWSYSSSGLTKQVDIPAHDT--------------------RVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             EEEEEEETTEEEEEEEEECCSS--------------------CCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred             EEEEecCCccceeEEEecCCCC--------------------CEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence            99999998765554  445543                    5999999999999999999999999999999877644

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.5e-33  Score=302.77  Aligned_cols=300  Identities=16%  Similarity=0.217  Sum_probs=234.8

Q ss_pred             CcEEEeCCCEEEeeeCCeEEEEECCCCcEEeec--cCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee-c
Q 038577           16 GNAVLSQNTKLISPVGNRVSVTDLIKSKTVTLP--VESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-F   92 (860)
Q Consensus        16 ~~~~~sdg~~l~~~~~~~i~v~d~~~~~~~~~~--~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~-~   92 (860)
                      ..++||.++.||+|.|++|+|||+.+|+....+  .+|...|++++|+|||++||+|+.||.|+|||+.+++.++.+. |
T Consensus       109 ~~l~wS~~n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h  188 (420)
T 4gga_A          109 NLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH  188 (420)
T ss_dssp             BCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             eeEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCC
Confidence            458899445999999999999999999986554  4678889999999999999999999999999999999999887 8


Q ss_pred             CCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeec
Q 038577           93 KYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVK  171 (860)
Q Consensus        93 ~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~  171 (860)
                      ...+.++++  ++.+|+++ .++.+++||......      .+..+.+|...+..+.|+|+++++++++.|+.+++|+..
T Consensus       189 ~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~------~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~  260 (420)
T 4gga_A          189 SARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEH------HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA  260 (420)
T ss_dssp             SSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSC------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred             CCceEEEee--CCCEEEEEeCCCceeEeeecccce------eeEEecccccceeeeeecCCCCeeeeeeccccceEEeec
Confidence            888888877  56788888 789999999987664      567889999999999999999999999999999999998


Q ss_pred             ccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeee
Q 038577          172 EKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKK  251 (860)
Q Consensus       172 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (860)
                      .+ +. ..........|.+.|.+++|+|++..    .++++                                       
T Consensus       261 ~~-~~-~~~~~~~~~~~~~~V~~~~~~p~~~~----~la~~---------------------------------------  295 (420)
T 4gga_A          261 PG-EG-GWVPLQTFTQHQGAVKAVAWCPWQSN----VLATG---------------------------------------  295 (420)
T ss_dssp             CC-SS-CSCCSEEECCCSSCEEEEEECTTCTT----EEEEE---------------------------------------
T ss_pred             cc-cc-cceeeeeecccCCceeeeeeCCCccc----EEEEE---------------------------------------
Confidence            76 11 11234556667777777777776551    22222                                       


Q ss_pred             EEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEc-cCCc
Q 038577          252 WGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQ  330 (860)
Q Consensus       252 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-~~g~  330 (860)
                                                   .|+.|+.|++||+.+++....+..+ ..+.++.|+++++.++++++ .++.
T Consensus       296 -----------------------------~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~  345 (420)
T 4gga_A          296 -----------------------------GGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQ  345 (420)
T ss_dssp             -----------------------------ECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCC
T ss_pred             -----------------------------eecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCE
Confidence                                         1224555555665555555555544 46788899999999988764 5699


Q ss_pred             EEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEE
Q 038577          331 LLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALH  398 (860)
Q Consensus       331 i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~  398 (860)
                      |++||+.+++.+..+.+|...|.+++|+|+|++|++|+.|++|++||+.+..+......+...+....
T Consensus       346 I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s  413 (420)
T 4gga_A          346 LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSS  413 (420)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC--------------
T ss_pred             EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccccc
Confidence            99999999999999999999999999999999999999999999999987666555555544443333

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.7e-34  Score=302.26  Aligned_cols=305  Identities=11%  Similarity=0.044  Sum_probs=230.0

Q ss_pred             CCCcEEEEEEccCCCCCccceEEEEcCCc-------cEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccc
Q 038577          188 HRDSVVGCFFSVDKKTDKVNRIYTIARDC-------YMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDF  260 (860)
Q Consensus       188 h~~~i~~~~~~~~~~~~~~~~l~s~~~dg-------~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (860)
                      -..+|.+++|+||++     +|++|+.+.       .|++|++........                  ..........+
T Consensus        13 ~g~PV~sv~fs~dg~-----~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~------------------~~~~~~~~~~l   69 (365)
T 4h5i_A           13 VGYPAYGAKFLNNDT-----LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEK------------------EQFHILSEFAL   69 (365)
T ss_dssp             CSSCEEEEEEEETTE-----EEEEEECCSSSSSCCEEEEEEEECTTSSSHH------------------HHEEEEEEEEC
T ss_pred             CCCCEEEEEEeCCCc-----EEEEECCCccccCCCCEEEEEEEcCCCccee------------------eeeeeeeEEEc
Confidence            346899999999999     999987543       599999986532100                  01111222345


Q ss_pred             cCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce
Q 038577          261 SQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES  340 (860)
Q Consensus       261 ~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~  340 (860)
                      ..+...+.++++  +++.+++|..++...+|+..                                .++.+++|++....
T Consensus        70 ~~~~~~v~s~~~--~~~~~~~g~~~~~~~l~s~~--------------------------------~d~~~r~~~~~~~~  115 (365)
T 4h5i_A           70 EDNDDSPTAIDA--SKGIILVGCNENSTKITQGK--------------------------------GNKHLRKFKYDKVN  115 (365)
T ss_dssp             CTTSCCCCEEEE--ETTEEEEECCCCHHHHHHTS--------------------------------CCCCEEEEEEETTT
T ss_pred             cCCCCceEEEEe--CCCEEEEEECCCccEEEEec--------------------------------CCCcEEEEEecCCC
Confidence            566667776654  45677777655444443321                                12445555544321


Q ss_pred             EE----EEe-----cCcccCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEE
Q 038577          341 YI----LKQ-----QGHYFDVNCLAYSPDSQLLATGA--DDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSA  409 (860)
Q Consensus       341 ~~----~~~-----~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~  409 (860)
                      ..    ...     ..+...+.+++|+|||+++++++  .|++|++||+.+++.+..+. |...|.+++|+|+|++++++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~  194 (365)
T 4h5i_A          116 DQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYI  194 (365)
T ss_dssp             TEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEE
T ss_pred             ceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEec
Confidence            11    111     23445688999999999987654  68999999999999998885 78889999999999999998


Q ss_pred             eCCCcEEEEEccccceeeE-eeCCCCCcEEEEEECCCCCEEEEEecCCC---eEEEEECCCCce----EEEecCcccCeE
Q 038577          410 SLDGTVRAWDLFRYRNFRT-FTTPSSRQFVSLASDQSGEVICAGTLDSF---EIFVWSMKTGRL----LDILSGHEGPVH  481 (860)
Q Consensus       410 ~~dg~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~i~v~d~~~~~~----~~~~~~h~~~v~  481 (860)
                      +.+ .+++|+..+++.... ....+...+.+++|+|++.++++++.++.   .+++|++..+..    ...+.+|..+|+
T Consensus       195 s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~  273 (365)
T 4h5i_A          195 TGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGIT  273 (365)
T ss_dssp             CSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEE
T ss_pred             cce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeE
Confidence            855 567777777665543 34456667999999999999999987763   688898876643    356788999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEE-cccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCC
Q 038577          482 GLVFSPTNATLASSSWDKTVRLWNVFEGKGSVES-FPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNG  551 (860)
Q Consensus       482 ~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  551 (860)
                      +++|+|||++||+|+.|++|+|||+.+++.+..+ .+|...|++++|||||++||+++.|++|+|||+...
T Consensus       274 ~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          274 SMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             eEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            9999999999999999999999999999877765 479999999999999999999999999999999653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=7.6e-36  Score=322.07  Aligned_cols=309  Identities=19%  Similarity=0.251  Sum_probs=242.3

Q ss_pred             EEEeeccCCCeEEEEEcC-CCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEcc-CCCCCccceEEE
Q 038577          134 IRTLADCNDKVTALNWSP-DSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSV-DKKTDKVNRIYT  211 (860)
Q Consensus       134 ~~~~~~h~~~v~~l~~s~-d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~~~~~~l~s  211 (860)
                      .....+|...|++++|+| ++++||+|+.||.|+|||+..+ ..   .....+.+|.+.|.+++|+| ++.     +|++
T Consensus       112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~-~~---~~~~~~~gH~~~V~~l~f~p~~~~-----~l~s  182 (435)
T 4e54_B          112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIK-DK---PTFIKGIGAGGSITGLKFNPLNTN-----QFYA  182 (435)
T ss_dssp             CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCC-SC---CEEECCCSSSCCCCEEEECSSCTT-----EEEE
T ss_pred             cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCC-Cc---eeEEEccCCCCCEEEEEEeCCCCC-----EEEE
Confidence            345678999999999999 5679999999999999999876 22   23445678999999999998 567     9999


Q ss_pred             EcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEE
Q 038577          212 IARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLY  291 (860)
Q Consensus       212 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~  291 (860)
                      ++.||+|++||++++..                        .  .......+...+.+++|+|++.++++|+.||.|++|
T Consensus       183 ~s~D~~v~iwd~~~~~~------------------------~--~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~w  236 (435)
T 4e54_B          183 SSMEGTTRLQDFKGNIL------------------------R--VFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILL  236 (435)
T ss_dssp             ECSSSCEEEEETTSCEE------------------------E--EEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEE
T ss_pred             EeCCCEEEEeeccCCce------------------------e--EEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeee
Confidence            99999999999876321                        1  111122334567899999999999999999999999


Q ss_pred             ECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEE---ecCcccCeEEEEEcCCCCEEEEEe
Q 038577          292 QMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILK---QQGHYFDVNCLAYSPDSQLLATGA  368 (860)
Q Consensus       292 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~  368 (860)
                      |+. ++.+..+..|...|.+++|+|++..++++++.|+.|++||+++......   ..+|...|++++|+|+|++|++++
T Consensus       237 d~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~  315 (435)
T 4e54_B          237 NMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD  315 (435)
T ss_dssp             ESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE
T ss_pred             ccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc
Confidence            995 5667778889999999999999987776666679999999987654332   357899999999999999999999


Q ss_pred             CCCcEEEEECCCCeeEEEeecCCCc------eEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEE
Q 038577          369 DDNKVKVWTVSSGFCFVTFTEHTNA------VTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLAS  442 (860)
Q Consensus       369 ~dg~i~iwd~~~~~~~~~~~~~~~~------v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  442 (860)
                      .||.|++||+.++.....+..|...      +....|+|++..+++++                                
T Consensus       316 ~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------  363 (435)
T 4e54_B          316 QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGR--------------------------------  363 (435)
T ss_dssp             SSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEEC--------------------------------
T ss_pred             CCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEE--------------------------------
Confidence            9999999999999888877766532      23345555555554443                                


Q ss_pred             CCCCCEEEEEecCCCeEEEEECCCCceEEEec-CcccCeEEE-EEcCCCCEEEEEeCCCcEEEEEccCCcc
Q 038577          443 DQSGEVICAGTLDSFEIFVWSMKTGRLLDILS-GHEGPVHGL-VFSPTNATLASSSWDKTVRLWNVFEGKG  511 (860)
Q Consensus       443 ~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~-~h~~~v~~l-~~s~~~~~l~s~~~dg~i~iwd~~~~~~  511 (860)
                      ++++..++++..+++.|++||..+++.+..+. +|...|.++ +|+|+|++|++|+ |+.|+||++++++.
T Consensus       364 ~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          364 YPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             CCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred             cCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence            33444444444454489999999999988764 688888887 6999999999876 88999999988763

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=5.2e-34  Score=300.42  Aligned_cols=291  Identities=15%  Similarity=0.228  Sum_probs=238.9

Q ss_pred             cCCceeEEEECCCCCEEE-EE-e---CCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCC---CCeEEEeecCC
Q 038577           92 FKYPVNAILFSPNGKYIA-VG-T---GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPD---SNYLLVGSKDL  163 (860)
Q Consensus        92 ~~~~v~~~~fspdg~~la-~~-~---~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d---~~~l~s~~~dg  163 (860)
                      |...|.+++|+|++..++ ++ .   ++.|++||+.+++.      ......+|...|.+++|+|+   +++|++++.||
T Consensus        17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg   90 (357)
T 3i2n_A           17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL------KLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG   90 (357)
T ss_dssp             CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSE------EEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred             CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcc------cceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence            899999999999996555 44 2   89999999998763      12333479999999999999   69999999999


Q ss_pred             eEEEEeecccccCcccc-cceEeecCCCcEEEEEE------ccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCC
Q 038577          164 AVRLFYVKEKLKGIHTN-KPFLLLGHRDSVVGCFF------SVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMED  236 (860)
Q Consensus       164 ~v~vwd~~~~~~~~~~~-~~~~~~~h~~~i~~~~~------~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~  236 (860)
                      .|++||+.++      . ....+.+|...|.++.|      +|++.     +|++++.||.|++||+..+....      
T Consensus        91 ~i~iwd~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-----~l~~~~~d~~i~vwd~~~~~~~~------  153 (357)
T 3i2n_A           91 NLHIWNLEAP------EMPVYSVKGHKEIINAIDGIGGLGIGEGAP-----EIVTGSRDGTVKVWDPRQKDDPV------  153 (357)
T ss_dssp             CEEEECTTSC------SSCSEEECCCSSCEEEEEEESGGGCC-CCC-----EEEEEETTSCEEEECTTSCSSCS------
T ss_pred             eEEEEeCCCC------CccEEEEEecccceEEEeeccccccCCCcc-----EEEEEeCCCeEEEEeCCCCCCcc------
Confidence            9999999987      3 57788899999999955      67888     99999999999999998754200      


Q ss_pred             CCCCCCCCCcceeeeEEeeeeccccCCCCceEEEE----ecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEE
Q 038577          237 SEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACD----YHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTA  312 (860)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~  312 (860)
                                   ..+    ..........+.+++    |+|+++++++++.+|.|++||+.+++.... ..+...+.++
T Consensus       154 -------------~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~  215 (357)
T 3i2n_A          154 -------------ANM----EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSL  215 (357)
T ss_dssp             -------------EEE----CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEE
T ss_pred             -------------eec----cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEE
Confidence                         000    000111234788888    789999999999999999999998887544 5677899999


Q ss_pred             EEee---CCCEEEEEEccCCcEEEEEccCceEEEEe-----cCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCC--
Q 038577          313 VFNE---LGNWLVFGCAKLGQLLVWEWRSESYILKQ-----QGHYFDVNCLAYSPDSQ-LLATGADDNKVKVWTVSSG--  381 (860)
Q Consensus       313 ~~s~---~~~~l~~~~~~~g~i~v~d~~~~~~~~~~-----~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~--  381 (860)
                      +|+|   ++..+++++.+ |.|++||++++.....+     .+|...|.+++|+|++. ++++++.||.|++||+.++  
T Consensus       216 ~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  294 (357)
T 3i2n_A          216 EFDRKDISMNKLVATSLE-GKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQ  294 (357)
T ss_dssp             EESCSSSSCCEEEEEEST-TEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSC
T ss_pred             EcCCCCCCCCEEEEECCC-CeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcc
Confidence            9999   89999988765 99999999887654433     38999999999999998 8999999999999998753  


Q ss_pred             -----------------eeEEEeecCCCceEEEEEeeCCCEEE-EEeCCCcEEEEEccccc
Q 038577          382 -----------------FCFVTFTEHTNAVTALHFMANNHSLL-SASLDGTVRAWDLFRYR  424 (860)
Q Consensus       382 -----------------~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg~i~~wd~~~~~  424 (860)
                                       ..+..+..|...|.+++|+|++++|+ +++.||.|++||+.+..
T Consensus       295 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          295 RSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             C--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             cccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence                             46778889999999999999999998 89999999999997654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.8e-35  Score=317.69  Aligned_cols=296  Identities=14%  Similarity=0.095  Sum_probs=233.9

Q ss_pred             eccCCccCeeEEEEcC-CCCEEEEEcCCCcEEEEEcccCeEEEEe---ecCCceeEEEECC-CCCEEEEE-eCCeEEEEe
Q 038577           47 LPVESSSNICRIAVSP-DGTFLLTVDENQRCHFINLHCHVVLHRV---RFKYPVNAILFSP-NGKYIAVG-TGKLVQIWR  120 (860)
Q Consensus        47 ~~~~h~~~v~~va~sp-dg~~la~~~~d~~i~vwd~~~~~~~~~~---~~~~~v~~~~fsp-dg~~la~~-~~~~i~iwd  120 (860)
                      ...+|...|+|++|+| ++++||+|+.||.|+|||+.++.....+   .|.+.|++++|+| ++.+|+++ .|+.|++||
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd  193 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD  193 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence            3446888999999999 5679999999999999999877544433   3899999999998 68899988 799999999


Q ss_pred             CCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccC
Q 038577          121 SPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVD  200 (860)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~  200 (860)
                      +.++..     ........+...+.+++|+|++++|++|+.||.|++||+...       ....+.+|...|.+++|+|+
T Consensus       194 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-------~~~~~~~h~~~v~~v~~~p~  261 (435)
T 4e54_B          194 FKGNIL-----RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-------ELWNLRMHKKKVTHVALNPC  261 (435)
T ss_dssp             TTSCEE-----EEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-------BCCCSBCCSSCEEEEEECTT
T ss_pred             ccCCce-----eEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-------eeEEEecccceEEeeeecCC
Confidence            987531     111222234456889999999999999999999999998654       45678899999999999998


Q ss_pred             CCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEE
Q 038577          201 KKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVV  280 (860)
Q Consensus       201 ~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  280 (860)
                      +..    .+++++.|++|++||+.......                         ......+|...|.+++|+|++++|+
T Consensus       262 ~~~----~~~s~s~d~~v~iwd~~~~~~~~-------------------------~~~~~~~h~~~v~~~~~spdg~~l~  312 (435)
T 4e54_B          262 CDW----FLATASVDQTVKIWDLRQVRGKA-------------------------SFLYSLPHRHPVNAACFSPDGARLL  312 (435)
T ss_dssp             CSS----EEEEEETTSBCCEEETTTCCSSS-------------------------CCSBCCBCSSCEEECCBCTTSSEEE
T ss_pred             Cce----EEEEecCcceeeEEecccccccc-------------------------eEEEeeeccccccceeECCCCCeeE
Confidence            863    67899999999999998753310                         0122346788999999999999999


Q ss_pred             EEEcCCeEEEEECCCceeEEEEeecCc------eeEEEEEeeCCCEEEEEEc-----------cCCcEEEEEccCceEEE
Q 038577          281 VGFSNGVFGLYQMPDFVCIHLLSISRE------KITTAVFNELGNWLVFGCA-----------KLGQLLVWEWRSESYIL  343 (860)
Q Consensus       281 ~~~~~g~i~~~~~~~~~~~~~~~~~~~------~i~~~~~s~~~~~l~~~~~-----------~~g~i~v~d~~~~~~~~  343 (860)
                      +++.||.|++||+.+++....+..+..      .+....|+|++..++++..           +++.|++||..+++.+.
T Consensus       313 s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~  392 (435)
T 4e54_B          313 TTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMC  392 (435)
T ss_dssp             EEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEE
T ss_pred             EEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEE
Confidence            999999999999999888777655432      2344567777777766653           33579999999999888


Q ss_pred             Eec-CcccCeEEE-EEcCCCCEEEEEeCCCcEEEEECCCCeeE
Q 038577          344 KQQ-GHYFDVNCL-AYSPDSQLLATGADDNKVKVWTVSSGFCF  384 (860)
Q Consensus       344 ~~~-~~~~~v~~~-~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  384 (860)
                      .+. +|...|.++ +|+|+|.+|++|+ |+.|++|++++++..
T Consensus       393 ~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          393 QLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             EECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred             EEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence            764 678888887 6999999999876 789999999887643

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.9e-36  Score=313.17  Aligned_cols=318  Identities=10%  Similarity=0.009  Sum_probs=252.8

Q ss_pred             cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEee
Q 038577           92 FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYV  170 (860)
Q Consensus        92 ~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~  170 (860)
                      ....|.+++|||||+++|++ .|++|+  |...++          .+.+|...|.+++|+|+|       .++.+.+|+.
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~----------~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~   74 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK----------DINCNSKNLFHVKEFPLE-------FENKLDFELA   74 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS----------CCSSBGGGTEEEEEECCC-------CCCTTTTSCC
T ss_pred             hhccEEEEEECCCCCEEEEEcCCceee--cccccc----------eecCCCccEEEEEECCCC-------CcceEEEEeC
Confidence            56889999999999999999 788888  755443          337999999999999999       4566666654


Q ss_pred             cccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceee
Q 038577          171 KEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVK  250 (860)
Q Consensus       171 ~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (860)
                      +..       ....+ +|...|.+++|+|+|.     +|++++.||.+++|+.++                         
T Consensus        75 ~~~-------~~~~~-~~~~~V~~vawSPdG~-----~LAs~s~dg~V~iwd~~~-------------------------  116 (588)
T 2j04_A           75 QQN-------GLLNS-QPVCYPRVCKPSPIDD-----WMAVLSNNGNVSVFKDNK-------------------------  116 (588)
T ss_dssp             CSS-------CSSTT-SCSCCEEEEEECSSSS-----CEEEEETTSCEEEEETTE-------------------------
T ss_pred             CCc-------eEeec-CCCCcEEEEEECCCCC-----EEEEEeCCCcEEEEeCCc-------------------------
Confidence            332       12222 5588999999999999     999999999999998532                         


Q ss_pred             eEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCce-------eEEEE----eecCceeEEEEEeeCCC
Q 038577          251 KWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFV-------CIHLL----SISREKITTAVFNELGN  319 (860)
Q Consensus       251 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~-------~~~~~----~~~~~~i~~~~~s~~~~  319 (860)
                      .+.... ....-....+.+++|+|+|++|++|+.||.|++|++.++.       .+.++    .+|...|.+++|+|+| 
T Consensus       117 ~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-  194 (588)
T 2j04_A          117 MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-  194 (588)
T ss_dssp             EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-
T ss_pred             eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-
Confidence            111100 0001112369999999999999999999999999998875       35666    4456799999999999 


Q ss_pred             EEEEEEccCCcEEEEEccCceE---EEEe-cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceE
Q 038577          320 WLVFGCAKLGQLLVWEWRSESY---ILKQ-QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVT  395 (860)
Q Consensus       320 ~l~~~~~~~g~i~v~d~~~~~~---~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  395 (860)
                       +++++. |+.+++|++.++..   ...+ .+|...|.+++|+  |+.+|+++ +++|++||+.++.......+|...|.
T Consensus       195 -Laass~-D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~  269 (588)
T 2j04_A          195 -LVAALS-NNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFH  269 (588)
T ss_dssp             -EEEEET-TCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCC
T ss_pred             -EEEEeC-CCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEE
Confidence             666655 49999999988773   3455 4788899999999  68999987 69999999998887554548999999


Q ss_pred             EEEE--eeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEe
Q 038577          396 ALHF--MANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDIL  473 (860)
Q Consensus       396 ~i~~--~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~  473 (860)
                      ++.|  +|++..+++++.||+ ++|...                 .+.++|++..++..  ++ ++++|+...+. ...+
T Consensus       270 ~va~~~s~d~~~La~a~edG~-klw~~d-----------------~~~~spd~~l~a~~--d~-~v~lW~~~g~~-l~~~  327 (588)
T 2j04_A          270 IIPLNHEKESTILLMSNKTSY-KVLLED-----------------ELHVTADNIIAPYL--EK-KFKKWSTIWNE-FNNY  327 (588)
T ss_dssp             EEEETTCSSCEEEEECSSCEE-EEEESS-----------------SEEEECCCSSHHHH--HH-HHHHTTTTTTS-SSSS
T ss_pred             EEEeeeCCCCCEEEEEcCCCC-EEEeec-----------------cEEECCCceEEEEc--CC-EEEEEECCCCc-eeee
Confidence            9999  999999999999999 999975                 25589999888775  55 89999986554 3355


Q ss_pred             cCcccCeEEEEEcCCCCEEEEEe
Q 038577          474 SGHEGPVHGLVFSPTNATLASSS  496 (860)
Q Consensus       474 ~~h~~~v~~l~~s~~~~~l~s~~  496 (860)
                      .+ ...|.+++|||||+.+|+++
T Consensus       328 ~~-~~~I~~va~SPdG~~lA~~~  349 (588)
T 2j04_A          328 ET-TLVIHGISLSPDGYSIAIVY  349 (588)
T ss_dssp             CC-EEEEEEEEECTTSSEEEEEE
T ss_pred             cc-ceEEEEEEECCCCCEEEEEE
Confidence            54 77799999999999999886

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.9e-33  Score=300.55  Aligned_cols=283  Identities=18%  Similarity=0.312  Sum_probs=242.7

Q ss_pred             eeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEe--cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 038577          308 KITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ--QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFV  385 (860)
Q Consensus       308 ~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  385 (860)
                      ....++|+++ +.|+++.  |++|++||..+++....+  .+|...|++++|+|+|++|++|+.||.|++||+.+++.+.
T Consensus       107 y~~~l~wS~~-n~lAvgl--d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~  183 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL--DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR  183 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE--TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             cceeEEECCC-CEEEEEe--CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence            3567899975 4666654  499999999999877655  4677889999999999999999999999999999999999


Q ss_pred             EeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECC
Q 038577          386 TFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK  465 (860)
Q Consensus       386 ~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~  465 (860)
                      .+.+|...+.++.++  +..+++++.|+.+++||.............+...+..+.++|++.++++++.|+ .+++|+..
T Consensus       184 ~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~-~v~i~~~~  260 (420)
T 4gga_A          184 NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN-LVNVWPSA  260 (420)
T ss_dssp             EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS-CEEEEESS
T ss_pred             EEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccc-cceEEeec
Confidence            999999999988774  669999999999999999876655544455667899999999999999999999 99999998


Q ss_pred             CCc----eEEEecCcccCeEEEEEcCCC-CEEEEE--eCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEe
Q 038577          466 TGR----LLDILSGHEGPVHGLVFSPTN-ATLASS--SWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACST  538 (860)
Q Consensus       466 ~~~----~~~~~~~h~~~v~~l~~s~~~-~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  538 (860)
                      +++    .+.....|...|.+++|+|++ ..++++  +.|++|++||+.+++.... ..+...+.++.|+|+++.+++++
T Consensus       261 ~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~-~~~~~~v~~~~~~~~~~~lv~~s  339 (420)
T 4gga_A          261 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA-VDAHSQVCSILWSPHYKELISGH  339 (420)
T ss_dssp             CCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE-EECSSCEEEEEEETTTTEEEEEE
T ss_pred             cccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee-eccccceeeeeecCCCCeEEEEE
Confidence            765    356777899999999999975 455554  4799999999999875544 44557899999999999998875


Q ss_pred             --CCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEE
Q 038577          539 --LDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLL  616 (860)
Q Consensus       539 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~  616 (860)
                        .||.|+|||+.+++++..+.+|..                    .|++++|+|||++|++|+.|++|++||+.+....
T Consensus       340 g~~d~~I~iwd~~~~~~v~~l~gH~~--------------------~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~  399 (420)
T 4gga_A          340 GFAQNQLVIWKYPTMAKVAELKGHTS--------------------RVLSLTMSPDGATVASAAADETLRLWRCFELDPA  399 (420)
T ss_dssp             CTTTCCEEEEETTTCCEEEEECCCSS--------------------CEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred             ecCCCEEEEEECCCCcEEEEEcCCCC--------------------CEEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence              689999999999999999999875                    5999999999999999999999999999776544


Q ss_pred             E
Q 038577          617 R  617 (860)
Q Consensus       617 ~  617 (860)
                      +
T Consensus       400 ~  400 (420)
T 4gga_A          400 R  400 (420)
T ss_dssp             -
T ss_pred             c
Confidence            3

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.3e-33  Score=285.47  Aligned_cols=248  Identities=17%  Similarity=0.199  Sum_probs=209.5

Q ss_pred             EecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--CeeEEEeecCCCceEEEEEeeC--CCEEEEEeCCCcEEEEE
Q 038577          344 KQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS--GFCFVTFTEHTNAVTALHFMAN--NHSLLSASLDGTVRAWD  419 (860)
Q Consensus       344 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~dg~i~~wd  419 (860)
                      .+.+|...|.+++|+|+|++|++|+.|++|++||+..  .+.+..+.+|.++|.+++|+++  +++|++++.|++|++||
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd   83 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK   83 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence            4578999999999999999999999999999999974  4677889999999999999864  88999999999999999


Q ss_pred             ccccce--eeEeeCCCCCcEEEEEECCC--CCEEEEEecCCCeEEEEECCCCc--eEEEecCcccCeEEEEEcCC-----
Q 038577          420 LFRYRN--FRTFTTPSSRQFVSLASDQS--GEVICAGTLDSFEIFVWSMKTGR--LLDILSGHEGPVHGLVFSPT-----  488 (860)
Q Consensus       420 ~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~i~v~d~~~~~--~~~~~~~h~~~v~~l~~s~~-----  488 (860)
                      +.+++.  ...+ ..+...+.+++|+|+  +.++++++.|+ .|++||++++.  ....+.+|...|.+++|+|+     
T Consensus        84 ~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~g~~l~s~s~d~-~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~  161 (297)
T 2pm7_B           84 EENGRWSQIAVH-AVHSASVNSVQWAPHEYGPMLLVASSDG-KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  161 (297)
T ss_dssp             BSSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTS-EEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred             cCCCceEEEEEe-ecCCCceeEEEeCcCCCCcEEEEEECCC-cEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence            987642  2233 345568999999998  89999999999 99999998763  24667889999999999997     


Q ss_pred             --------CCEEEEEeCCCcEEEEEccCCc----ceeEEcccCCCeEEEEEeeCC---CEEEEEeCCCeEEEEeCCCCce
Q 038577          489 --------NATLASSSWDKTVRLWNVFEGK----GSVESFPHTHDVLTVVYRPDG---RQLACSTLDGQIHFWDPLNGEL  553 (860)
Q Consensus       489 --------~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~  553 (860)
                              +++|++++.|++|++||+.++.    ....+.+|...|.+++|+|++   .+|++++.|++|++||+.++..
T Consensus       162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~  241 (297)
T 2pm7_B          162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG  241 (297)
T ss_dssp             --------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred             ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC
Confidence                    5799999999999999998765    334566899999999999985   8999999999999999876531


Q ss_pred             --e-EEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECC
Q 038577          554 --M-YTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVA  611 (860)
Q Consensus       554 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~  611 (860)
                        . ..+..                  ..+...|.+++|+|+|++|++++.||.|++|+..
T Consensus       242 ~~~~~~~~~------------------~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          242 PWKKTLLKE------------------EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             CCEEEESSS------------------SCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             ccceeeeec------------------ccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence              1 11110                  0122469999999999999999999999999976

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.5e-33  Score=305.09  Aligned_cols=329  Identities=15%  Similarity=0.228  Sum_probs=242.6

Q ss_pred             CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-----------eEEEeecCC------------CceEEEEEeeCC
Q 038577          347 GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGF-----------CFVTFTEHT------------NAVTALHFMANN  403 (860)
Q Consensus       347 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~------------~~v~~i~~~~~~  403 (860)
                      .+...|.+++|+|+|++|++|+.||.|++|++.++.           ....+.+|.            ..|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            357889999999999999999999999999998876           577888998            889999999998


Q ss_pred             --CEEEEEeCCCcEEEEEcccccee---------------------------------------eEeeCCCCCcEEEEEE
Q 038577          404 --HSLLSASLDGTVRAWDLFRYRNF---------------------------------------RTFTTPSSRQFVSLAS  442 (860)
Q Consensus       404 --~~l~s~~~dg~i~~wd~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~  442 (860)
                        ..+++++.|+.|++||+.+....                                       +.+...+...+.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              79999999999999999764432                                       1333456778999999


Q ss_pred             CCCCCEEEEEecCCCeEEEEECCC-CceEE-------EecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEEccCCcc--
Q 038577          443 DQSGEVICAGTLDSFEIFVWSMKT-GRLLD-------ILSGHEGPVHGLVFSPTN-ATLASSSWDKTVRLWNVFEGKG--  511 (860)
Q Consensus       443 ~~~~~~l~~~~~~~~~i~v~d~~~-~~~~~-------~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~--  511 (860)
                      +|++++++++ .|+ .|++||+++ ++...       .+.+|...|.+++|+|++ .+|++++.||.|++||+.+++.  
T Consensus       186 ~~~~~~l~s~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          186 NSDYETYLSA-DDL-RINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             CTTSSEEEEE-CSS-EEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred             cCCCCEEEEe-CCC-eEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence            9999999998 677 999999994 44444       256899999999999998 9999999999999999998875  


Q ss_pred             --eeEEcccCC------------CeEEEEEeeCCCEEEEEeCCCeEEEEeCCC-CceeEEEecccccCCCcccccccccc
Q 038577          512 --SVESFPHTH------------DVLTVVYRPDGRQLACSTLDGQIHFWDPLN-GELMYTIEGRRDISGGRLMTDRRSAA  576 (860)
Q Consensus       512 --~~~~~~~~~------------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  576 (860)
                        ...+..|..            .|.+++|+|+|++|++++. +.|++||+.+ ++++..+.+|..........     .
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~-----~  337 (447)
T 3dw8_B          264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSL-----Y  337 (447)
T ss_dssp             TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHH-----H
T ss_pred             ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccc-----c
Confidence              455556665            8999999999999999998 9999999997 88888888876421100000     0


Q ss_pred             ccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeecccccccceeeeccCCCCCCCCCCccccCCCCCcc
Q 038577          577 NSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTE  656 (860)
Q Consensus       577 ~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  656 (860)
                      ....-..+..++|+|+|++|++++.||.|++||+.+++.+. +.......  ..........+...+..      ...  
T Consensus       338 ~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~--  406 (447)
T 3dw8_B          338 ENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENN--KPRTVLKPRKVCASGKR------KKD--  406 (447)
T ss_dssp             HTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTC--CTTCBCCCCCEECSSCC------CTT--
T ss_pred             cccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeeccccc--ccccccCCccccccCCc------ccc--
Confidence            00000013459999999999999999999999999998762 22221100  00000000000000000      000  


Q ss_pred             ccccccccCccccCCCCCCCCCCCCccceeEEEECCCCCeEEEeccccEEEEec
Q 038577          657 EGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYSI  710 (860)
Q Consensus       657 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~i~~~  710 (860)
                               ....       ........+..++++|+|..+++++.+++++|..
T Consensus       407 ---------~~~~-------~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~~~  444 (447)
T 3dw8_B          407 ---------EISV-------DSLDFNKKILHTAWHPKENIIAVATTNNLYIFQD  444 (447)
T ss_dssp             ---------CEEG-------GGCCTTSCCCEEEECSSSSEEEEECSSCEEEEEC
T ss_pred             ---------cccc-------cccccCCceeEEEECCCCCEEEEEecceeeeecc
Confidence                     0000       0011223688999999999999999999998864

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.4e-33  Score=296.56  Aligned_cols=284  Identities=19%  Similarity=0.314  Sum_probs=243.4

Q ss_pred             eEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEee-cCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEe
Q 038577          267 VTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSI-SREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ  345 (860)
Q Consensus       267 v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~  345 (860)
                      +.++.|++  ..+++++.+|.|++|++.+++....+.. +...|.+++|+|+++.+++++.+ |.|++||+.+++.+..+
T Consensus        96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~  172 (401)
T 4aez_A           96 LNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGN-GLVDIYDVESQTKLRTM  172 (401)
T ss_dssp             CBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETT-SCEEEEETTTCCEEEEE
T ss_pred             EEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCC-CeEEEEECcCCeEEEEe
Confidence            44566654  5688899999999999999998887776 67889999999999999998876 99999999999999999


Q ss_pred             cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q 038577          346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVS-SGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYR  424 (860)
Q Consensus       346 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~  424 (860)
                      .+|...|.+++|  ++..+++++.||.|++||+. .+.....+..|...|.+++|+|++++|++++.|+.|++||+.+++
T Consensus       173 ~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~  250 (401)
T 4aez_A          173 AGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI  250 (401)
T ss_dssp             CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS
T ss_pred             cCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC
Confidence            999999999999  46799999999999999998 567788889999999999999999999999999999999999988


Q ss_pred             eeeEeeCCCCCcEEEEEECCCCCE-EEEEe--cCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEe--CCC
Q 038577          425 NFRTFTTPSSRQFVSLASDQSGEV-ICAGT--LDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSS--WDK  499 (860)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~--~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~--~dg  499 (860)
                      ....+.. +...+.+++++|++.. +++++  .++ .|++||+.+++.+..+. +...|.+++|+|+++++++++  .||
T Consensus       251 ~~~~~~~-~~~~v~~~~~~p~~~~ll~~~~gs~d~-~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg  327 (401)
T 4aez_A          251 PKFTKTN-HNAAVKAVAWCPWQSNLLATGGGTMDK-QIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDN  327 (401)
T ss_dssp             EEEEECC-CSSCCCEEEECTTSTTEEEEECCTTTC-EEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTC
T ss_pred             ccEEecC-CcceEEEEEECCCCCCEEEEecCCCCC-EEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCC
Confidence            7777654 4557899999997754 44443  466 99999999999998886 678899999999999999954  899


Q ss_pred             cEEEEEccCCccee--EEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEe
Q 038577          500 TVRLWNVFEGKGSV--ESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIE  558 (860)
Q Consensus       500 ~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  558 (860)
                      .|++||+.++....  ....|...|.+++|+|++++|++++.||.|++|++.+++.+....
T Consensus       328 ~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~  388 (401)
T 4aez_A          328 NLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI  388 (401)
T ss_dssp             EEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred             cEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence            99999999865433  355799999999999999999999999999999999998776543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.2e-35  Score=311.00  Aligned_cols=281  Identities=15%  Similarity=0.147  Sum_probs=232.5

Q ss_pred             CCCceEEEEecCCCCEEEEEEcCCeEEEEECCCc--eeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce
Q 038577          263 APSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDF--VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES  340 (860)
Q Consensus       263 ~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~  340 (860)
                      +...|.+++|+|++++|++++.||.|++|++.++  +....+..|...|.+++|+|+++++++++.+ +.|++||+.++.
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-~~v~vwd~~~~~   88 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD-RNAYVYEKRPDG   88 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT-SSEEEC------
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC-CeEEEEEcCCCC
Confidence            4568999999999999999999999999999888  6778888899999999999999999988876 999999999887


Q ss_pred             ---EEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---eEEEeec-CCCceEEEEEeeCCCEEEEEeCCC
Q 038577          341 ---YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGF---CFVTFTE-HTNAVTALHFMANNHSLLSASLDG  413 (860)
Q Consensus       341 ---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg  413 (860)
                         ....+..|...|.+++|+|++++|++++.|+.|++||+.++.   ....+.. |...|.+++|+|++++|++++.|+
T Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~  168 (377)
T 3dwl_C           89 TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADR  168 (377)
T ss_dssp             CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSS
T ss_pred             ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCC
Confidence               667778899999999999999999999999999999999876   4677777 999999999999999999999999


Q ss_pred             cEEEEEccc------------------cceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCce----EE
Q 038577          414 TVRAWDLFR------------------YRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRL----LD  471 (860)
Q Consensus       414 ~i~~wd~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~----~~  471 (860)
                      .|++||+..                  ++....+  .+...+.+++|+|+++++++++.|+ .|++||+.+++.    +.
T Consensus       169 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~  245 (377)
T 3dwl_C          169 KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDS-SVTIAYPSAPEQPPRALI  245 (377)
T ss_dssp             CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTT-EEC-CEECSTTSCEEECC
T ss_pred             EEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCC-cEEEEECCCCCCcceeeE
Confidence            999999852                  3344444  6667899999999999999999998 999999999987    78


Q ss_pred             EecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCc-c--------------------------e---------eE-
Q 038577          472 ILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGK-G--------------------------S---------VE-  514 (860)
Q Consensus       472 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~--------------------------~---------~~-  514 (860)
                      .+.+|..+|.+++|+|++++|++++.++.+ +|+..... .                          .         .. 
T Consensus       246 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (377)
T 3dwl_C          246 TVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTF  324 (377)
T ss_dssp             CEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------
T ss_pred             eecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccc
Confidence            889999999999999999999998866655 67654211 0                          0         00 


Q ss_pred             ---------------EcccCCCeEEEEEeeCC-C---EEEEEeCCCeEEEEeC
Q 038577          515 ---------------SFPHTHDVLTVVYRPDG-R---QLACSTLDGQIHFWDP  548 (860)
Q Consensus       515 ---------------~~~~~~~v~~~~~s~~~-~---~l~~~~~dg~i~iwd~  548 (860)
                                     ...|...|+++++.++. .   .|++++.||.|++||+
T Consensus       325 ~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          325 RNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             ------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                           01288999999976643 3   6999999999999985

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.8e-32  Score=280.94  Aligned_cols=278  Identities=18%  Similarity=0.325  Sum_probs=240.2

Q ss_pred             eEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEe--cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 038577          309 ITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ--QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVT  386 (860)
Q Consensus       309 i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  386 (860)
                      ...++||+++ .|+++ . |++|++||+.+++.+..+  .+|...|.+++|+|+++++++|+.||.|++|++++++.+..
T Consensus        28 ~~~l~WS~~~-~lAvg-~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~  104 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-L-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN  104 (318)
T ss_dssp             CBCEEECTTS-EEEEE-E-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             ceEEEECCCC-EEEEE-e-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE
Confidence            4678999876 56554 3 499999999999887766  46778899999999999999999999999999999999999


Q ss_pred             eecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCC
Q 038577          387 FTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT  466 (860)
Q Consensus       387 ~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~  466 (860)
                      +.+|...+.++.+  ++..+++++.++.+++|+.............+...+..+.++++++++++++.|+ .|++||+++
T Consensus       105 ~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~  181 (318)
T 4ggc_A          105 MTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN-LVNVWPSAP  181 (318)
T ss_dssp             EECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS-CEEEEESSC
T ss_pred             ecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCc-ceeEEECCC
Confidence            9999998877654  5679999999999999999887666555556677899999999999999999998 999999998


Q ss_pred             Cce----EEEecCcccCeEEEEEcCCCCE---EEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEe-
Q 038577          467 GRL----LDILSGHEGPVHGLVFSPTNAT---LASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACST-  538 (860)
Q Consensus       467 ~~~----~~~~~~h~~~v~~l~~s~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-  538 (860)
                      ++.    ......|.+.|.+++++|++..   +++++.++.|++||..... ......+...+..+.|+|++..+++++ 
T Consensus       182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~sg  260 (318)
T 4ggc_A          182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-CLSAVDAHSQVCSILWSPHYKELISGHG  260 (318)
T ss_dssp             BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC-EEEEEECSSCEEEEEEETTTTEEEEEEC
T ss_pred             CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc-ccccccceeeeeeeeecccccceEEEEE
Confidence            753    4556678899999999997653   3456778999999998876 455566788899999999999888765 


Q ss_pred             -CCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCc
Q 038577          539 -LDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQ  613 (860)
Q Consensus       539 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~  613 (860)
                       .|+.|++||+.+++++.++.+|..                    .|++++|+|||++|++++.||+|++||+.+.
T Consensus       261 ~~d~~i~iwd~~~~~~~~~l~gH~~--------------------~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          261 FAQNQLVIWKYPTMAKVAELKGHTS--------------------RVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             TTTCCEEEEETTTCCEEEEECCCSS--------------------CEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             cCCCEEEEEECCCCcEEEEEcCCCC--------------------CEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence             789999999999999999999876                    5999999999999999999999999999764

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=5.8e-33  Score=282.45  Aligned_cols=248  Identities=21%  Similarity=0.287  Sum_probs=213.3

Q ss_pred             EEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccC--ceEEEEecCcccCeEEEEEcCC--CCEEEEEeCCCcEEE
Q 038577          300 HLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRS--ESYILKQQGHYFDVNCLAYSPD--SQLLATGADDNKVKV  375 (860)
Q Consensus       300 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~--~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i  375 (860)
                      ..+..|...|.+++|+|+|++|++++.+ +.|++||+..  .+.+..+.+|...|.+++|+++  +++|++|+.|++|++
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D-~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSD-KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI   81 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETT-SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCC-CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence            3456788999999999999999998876 9999999974  3667788999999999999874  899999999999999


Q ss_pred             EECCCCe--eEEEeecCCCceEEEEEeeC--CCEEEEEeCCCcEEEEEcccccee-eEeeCCCCCcEEEEEECCC-----
Q 038577          376 WTVSSGF--CFVTFTEHTNAVTALHFMAN--NHSLLSASLDGTVRAWDLFRYRNF-RTFTTPSSRQFVSLASDQS-----  445 (860)
Q Consensus       376 wd~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~-----  445 (860)
                      ||+.++.  .+..+..|...|.+++|+|+  +.+|++++.|+.|++||+.+.... ......+...+.+++|+|+     
T Consensus        82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~  161 (297)
T 2pm7_B           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  161 (297)
T ss_dssp             EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred             EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence            9998774  56677889999999999997  889999999999999999876422 2233455668999999997     


Q ss_pred             --------CCEEEEEecCCCeEEEEECCCCc----eEEEecCcccCeEEEEEcCCC---CEEEEEeCCCcEEEEEccCCc
Q 038577          446 --------GEVICAGTLDSFEIFVWSMKTGR----LLDILSGHEGPVHGLVFSPTN---ATLASSSWDKTVRLWNVFEGK  510 (860)
Q Consensus       446 --------~~~l~~~~~~~~~i~v~d~~~~~----~~~~~~~h~~~v~~l~~s~~~---~~l~s~~~dg~i~iwd~~~~~  510 (860)
                              +++|++++.|+ .|++||+++++    ....+.+|...|.+++|+|++   .+|++++.|++|++||+....
T Consensus       162 ~~~~~~~~~~~l~sgs~D~-~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~  240 (297)
T 2pm7_B          162 GEHNGTKESRKFVTGGADN-LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ  240 (297)
T ss_dssp             --------CCEEEEEETTS-CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             ccCCCCCCcceEEEEcCCC-cEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCC
Confidence                    57999999998 99999998876    667889999999999999985   899999999999999998753


Q ss_pred             c--eeEE---cccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCC
Q 038577          511 G--SVES---FPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPL  549 (860)
Q Consensus       511 ~--~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  549 (860)
                      .  ....   ..|...|.+++|+|+|++|++++.||.|++|+..
T Consensus       241 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          241 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             SCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             CccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            1  1222   3578899999999999999999999999999976

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=8.4e-33  Score=289.46  Aligned_cols=297  Identities=11%  Similarity=0.104  Sum_probs=234.8

Q ss_pred             CCCeEEEEEcCCCCeEEEeecCC-------eEEEEeecccccCc----ccccceEeecCCCcEEEEEEccCCCCCccceE
Q 038577          141 NDKVTALNWSPDSNYLLVGSKDL-------AVRLFYVKEKLKGI----HTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRI  209 (860)
Q Consensus       141 ~~~v~~l~~s~d~~~l~s~~~dg-------~v~vwd~~~~~~~~----~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l  209 (860)
                      .-+|.+++|+||+++|++|+.+.       .|++|++.......    .......+.+|...+.++++..  .     .+
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~--~-----~~   86 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK--G-----II   86 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET--T-----EE
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC--C-----EE
Confidence            45799999999999999987643       59999998662110    0112245678888888887654  3     55


Q ss_pred             EEE-----------cCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCE
Q 038577          210 YTI-----------ARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDM  278 (860)
Q Consensus       210 ~s~-----------~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  278 (860)
                      +++           +.|+.+++|++......                   ...+..........+...+.+++|+|||++
T Consensus        87 ~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~  147 (365)
T 4h5i_A           87 LVGCNENSTKITQGKGNKHLRKFKYDKVNDQ-------------------LEFLTSVDFDASTNADDYTKLVYISREGTV  147 (365)
T ss_dssp             EEECCCCHHHHHHTSCCCCEEEEEEETTTTE-------------------EEEEEEECSSCCCCTTCCEEEEEECTTSSC
T ss_pred             EEEECCCccEEEEecCCCcEEEEEecCCCce-------------------EEEeeeeceeecCCcccCEEEEEEcCCCCE
Confidence            555           45678999988764330                   111111112223344556899999999999


Q ss_pred             EEEEE--cCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEe--cCcccCeEE
Q 038577          279 VVVGF--SNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ--QGHYFDVNC  354 (860)
Q Consensus       279 l~~~~--~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~--~~~~~~v~~  354 (860)
                      +++++  .|+.|++||+.+++.+..+. +...|.+++|+|||+++++++.  +.+.+|+..++......  ..|...|.+
T Consensus       148 la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~  224 (365)
T 4h5i_A          148 AAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITG--SSLEVISTVTGSCIARKTDFDKNWSLSK  224 (365)
T ss_dssp             EEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECS--SCEEEEETTTCCEEEEECCCCTTEEEEE
T ss_pred             EEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccc--eeEEEEEeccCcceeeeecCCCCCCEEE
Confidence            87655  67999999999999998886 5678999999999999988864  56778887777665443  568888999


Q ss_pred             EEEcCCCCEEEEEeCCC----cEEEEECCCCee----EEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcccccee
Q 038577          355 LAYSPDSQLLATGADDN----KVKVWTVSSGFC----FVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNF  426 (860)
Q Consensus       355 ~~~s~~~~~l~~~~~dg----~i~iwd~~~~~~----~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~  426 (860)
                      ++|+|+++.+++++.|+    .++.|++.....    ...+.+|...|++++|+|+|++|++|+.|++|++||+.+++.+
T Consensus       225 v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~  304 (365)
T 4h5i_A          225 INFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMS  304 (365)
T ss_dssp             EEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE
T ss_pred             EEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEE
Confidence            99999999999999887    688899876643    3467789999999999999999999999999999999999999


Q ss_pred             eEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCC
Q 038577          427 RTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTG  467 (860)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~  467 (860)
                      ..+...+...|.+++|+|||++|++++.|+ +|+|||+...
T Consensus       305 ~~~~~gH~~~V~~v~fSpdg~~laS~S~D~-tvrvw~ip~~  344 (365)
T 4h5i_A          305 KIFKQAHSFAITEVTISPDSTYVASVSAAN-TIHIIKLPLN  344 (365)
T ss_dssp             EEETTSSSSCEEEEEECTTSCEEEEEETTS-EEEEEECCTT
T ss_pred             EEecCcccCCEEEEEECCCCCEEEEEeCCC-eEEEEEcCCC
Confidence            888777888999999999999999999999 9999999643

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=4.7e-32  Score=280.19  Aligned_cols=279  Identities=15%  Similarity=0.262  Sum_probs=238.6

Q ss_pred             eeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEE--eeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeeccc
Q 038577           96 VNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRT--LADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEK  173 (860)
Q Consensus        96 v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~  173 (860)
                      .++|+||+++ +||+|.|+.|+|||+.+++.       ...  +.+|...|++++|+|++++|++|+.||.|++|++.++
T Consensus        28 ~~~l~WS~~~-~lAvg~D~tV~iWd~~tg~~-------~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~   99 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVALDNSVYLWSASSGDI-------LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ   99 (318)
T ss_dssp             CBCEEECTTS-EEEEEETTEEEEEETTTCCE-------EEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             ceEEEECCCC-EEEEEeCCEEEEEECCCCCE-------EEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc
Confidence            5789999987 89999999999999999873       444  4578889999999999999999999999999999988


Q ss_pred             ccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEE
Q 038577          174 LKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWG  253 (860)
Q Consensus       174 ~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (860)
                            .....+.+|...+.++.+  ++.     .+++++.++.+++|+......                         
T Consensus       100 ------~~~~~~~~h~~~~~~~~~--~~~-----~l~s~~~~~~~~~~~~~~~~~-------------------------  141 (318)
T 4ggc_A          100 ------KRLRNMTSHSARVGSLSW--NSY-----ILSSGSRSGHIHHHDVRVAEH-------------------------  141 (318)
T ss_dssp             ------EEEEEEECCSSCEEEEEE--ETT-----EEEEEETTSEEEEEETTSSSC-------------------------
T ss_pred             ------eeEEEecCccceEEEeec--CCC-----EEEEEecCCceEeeecCCCce-------------------------
Confidence                  678888999999887655  455     899999999999998876432                         


Q ss_pred             eeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCcee----EEEEeecCceeEEEEEeeCCCEEEE--EEcc
Q 038577          254 LLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVC----IHLLSISREKITTAVFNELGNWLVF--GCAK  327 (860)
Q Consensus       254 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~--~~~~  327 (860)
                        ....+.+|...+.++.+.++++++++++.||.|++||+.+++.    ......+...+..+.++|++..++.  ++..
T Consensus       142 --~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  219 (318)
T 4ggc_A          142 --HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS  219 (318)
T ss_dssp             --EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTT
T ss_pred             --eEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCC
Confidence              2234557888999999999999999999999999999987653    3455667778999999998876553  3345


Q ss_pred             CCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCE
Q 038577          328 LGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGA--DDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHS  405 (860)
Q Consensus       328 ~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~  405 (860)
                      ++.|++||.......... .+...+..+.|+|++..+++++  .|+.|++||+.+++++..+.+|.+.|++++|+|++++
T Consensus       220 ~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~  298 (318)
T 4ggc_A          220 DRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT  298 (318)
T ss_dssp             TCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSC
T ss_pred             CCEEEEEecccccccccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence            689999999988776654 4666799999999999888765  7899999999999999999999999999999999999


Q ss_pred             EEEEeCCCcEEEEEcccc
Q 038577          406 LLSASLDGTVRAWDLFRY  423 (860)
Q Consensus       406 l~s~~~dg~i~~wd~~~~  423 (860)
                      |++++.||+|++||+.+.
T Consensus       299 l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          299 VASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EEEEETTTEEEEECCSCC
T ss_pred             EEEEecCCeEEEEECCCC
Confidence            999999999999998654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.6e-32  Score=287.01  Aligned_cols=278  Identities=14%  Similarity=0.147  Sum_probs=242.5

Q ss_pred             EeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce---EEEEecCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEE
Q 038577          302 LSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES---YILKQQGHYFDVNCLAYSPDSQ-LLATGADDNKVKVWT  377 (860)
Q Consensus       302 ~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~---~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd  377 (860)
                      ...|.+.|.+++|+|+++.+++++.+ |.|++|++.++.   .......|...|.+++|+|+++ +|++|+.||.|++||
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d-~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd   85 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWD-GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETT-SEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCC-CeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence            34678899999999999999988776 999999998876   3444568999999999999999 999999999999999


Q ss_pred             C-CCCeeEEEeec--CCCceEEEEEeeCCCEEEEEeCCCcEEEEEccc---------cceeeEeeCCCCCcEEEEEECCC
Q 038577          378 V-SSGFCFVTFTE--HTNAVTALHFMANNHSLLSASLDGTVRAWDLFR---------YRNFRTFTTPSSRQFVSLASDQS  445 (860)
Q Consensus       378 ~-~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~  445 (860)
                      + .++.. ..+..  |...|.+++|+| +..+++++.|+.|++||+.+         .+....+.  ....+.+++++|+
T Consensus        86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~  161 (342)
T 1yfq_A           86 LIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNKIFTMDTNSS  161 (342)
T ss_dssp             SSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--SCCCEEEEEECSS
T ss_pred             eccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--eCCceEEEEecCC
Confidence            9 77654 67778  999999999999 99999999999999999987         66665555  5568999999998


Q ss_pred             CCEEEEEecCCCeEEEEECCC-Cc--eEEEecCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEccCC------cceeEE
Q 038577          446 GEVICAGTLDSFEIFVWSMKT-GR--LLDILSGHEGPVHGLVFSP-TNATLASSSWDKTVRLWNVFEG------KGSVES  515 (860)
Q Consensus       446 ~~~l~~~~~~~~~i~v~d~~~-~~--~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~------~~~~~~  515 (860)
                      +  +++++.++ .|++||+++ +.  .......|...|.+++|+| +++++++++.||.|++|++...      +....+
T Consensus       162 ~--l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~  238 (342)
T 1yfq_A          162 R--LIVGMNNS-QVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF  238 (342)
T ss_dssp             E--EEEEESTT-EEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred             c--EEEEeCCC-eEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceee
Confidence            8  88888888 999999998 54  3445567889999999999 9999999999999999999876      556666


Q ss_pred             cccCC---------CeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecc-cccCCCccccccccccccCCCCcEE
Q 038577          516 FPHTH---------DVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGR-RDISGGRLMTDRRSAANSSSGKCFT  585 (860)
Q Consensus       516 ~~~~~---------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~  585 (860)
                      ..|..         .|.+++|+|++++|++++.||.|++||+.+++.+..+.+| ..                    .|.
T Consensus       239 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~--------------------~v~  298 (342)
T 1yfq_A          239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED--------------------SVV  298 (342)
T ss_dssp             ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSS--------------------EEE
T ss_pred             ecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCC--------------------Cce
Confidence            66654         9999999999999999999999999999999999998887 53                    589


Q ss_pred             EEEEecCCCEEEEecCCCe-EEEEE
Q 038577          586 TLCYSADGSYILAGGSSKY-ICMYD  609 (860)
Q Consensus       586 ~l~~s~~g~~l~~~~~dg~-v~vwd  609 (860)
                      +++  |+|++|++++.||. .+.|.
T Consensus       299 ~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          299 KIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             Eec--CCCCeEEEEecCCccccccc
Confidence            999  99999999999998 55554

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.2e-32  Score=289.21  Aligned_cols=298  Identities=14%  Similarity=0.232  Sum_probs=231.4

Q ss_pred             EEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc----eEEEEecCcccCeEEEEEcC--CCCEEEEEeCCCcEE
Q 038577          301 LLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE----SYILKQQGHYFDVNCLAYSP--DSQLLATGADDNKVK  374 (860)
Q Consensus       301 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~----~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~  374 (860)
                      .+..|...|.+++|+|+++++++++.+ |.|++||+.++    +....+.+|...|.+++|+|  ++++|++++.||.|+
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSD-QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETT-SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCC-CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            456788999999999999999988776 99999999876    46667789999999999999  699999999999999


Q ss_pred             EEECCCC---------eeEEEeecCCCceEEEEEeeC--CCEEEEEeCCCcEEEEEccccceeeEee------------C
Q 038577          375 VWTVSSG---------FCFVTFTEHTNAVTALHFMAN--NHSLLSASLDGTVRAWDLFRYRNFRTFT------------T  431 (860)
Q Consensus       375 iwd~~~~---------~~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~dg~i~~wd~~~~~~~~~~~------------~  431 (860)
                      +||+.++         +.+..+..|...|.+++|+|+  +.++++++.||.|++||+.+++....+.            .
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            9999887         668888899999999999999  9999999999999999998877554433            1


Q ss_pred             CCCCcEEEEEECCC---CCEEEEEecCCCeEEEEECCCCce--EEEecCcccCeEEEEEcCCC----CEEEEEeCCCcEE
Q 038577          432 PSSRQFVSLASDQS---GEVICAGTLDSFEIFVWSMKTGRL--LDILSGHEGPVHGLVFSPTN----ATLASSSWDKTVR  502 (860)
Q Consensus       432 ~~~~~~~~~~~~~~---~~~l~~~~~~~~~i~v~d~~~~~~--~~~~~~h~~~v~~l~~s~~~----~~l~s~~~dg~i~  502 (860)
                      .+...+.+++++|+   +..+++++.++ .+.+|+...++.  +..+.+|...|++++|+|++    ++|++++.||.|+
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~  243 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQ-AIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR  243 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTE-EEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCC-cEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence            45567899999997   99999999998 888888887765  67788999999999999998    8999999999999


Q ss_pred             EEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEe----CCCeEEEEeCCCCceeEEEecccccCCCcccccccccccc
Q 038577          503 LWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACST----LDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANS  578 (860)
Q Consensus       503 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  578 (860)
                      +||+..+........+.........++....++.+.    ....+.+|+..+.+.+..+.+|..                
T Consensus       244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----------------  307 (351)
T 3f3f_A          244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG----------------  307 (351)
T ss_dssp             EEEEEECC---------------------------------------CCSEEEEEEEEECTTSS----------------
T ss_pred             EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccc----------------
Confidence            999988765544444444455555555554444443    344567777777778888887765                


Q ss_pred             CCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEe
Q 038577          579 SSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQ  620 (860)
Q Consensus       579 ~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~  620 (860)
                          .|++++|+|+|++|++++.||.|++|++.+++.++.+.
T Consensus       308 ----~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~  345 (351)
T 3f3f_A          308 ----EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS  345 (351)
T ss_dssp             ----CEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred             ----cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence                59999999999999999999999999999987776554

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.6e-32  Score=298.65  Aligned_cols=300  Identities=15%  Similarity=0.243  Sum_probs=237.9

Q ss_pred             cCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce-----------EEEEecCcc------------cCeEEEEEcCCC
Q 038577          305 SREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES-----------YILKQQGHY------------FDVNCLAYSPDS  361 (860)
Q Consensus       305 ~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~-----------~~~~~~~~~------------~~v~~~~~s~~~  361 (860)
                      +.+.|.+++|+|+|++|++++.+ |.|++||+.++.           ....+.+|.            ..|.+++|+|++
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKG-GRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETT-SEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             ccCcEEEEEECCCCCEEEEEcCC-CeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            45789999999999999998876 999999999876           477778898            889999999998


Q ss_pred             --CEEEEEeCCCcEEEEECCCCeeE---------------------------------------EE-eecCCCceEEEEE
Q 038577          362 --QLLATGADDNKVKVWTVSSGFCF---------------------------------------VT-FTEHTNAVTALHF  399 (860)
Q Consensus       362 --~~l~~~~~dg~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~~i~~  399 (860)
                        ..+++++.|+.|++||+.++...                                       .. ..+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              79999999999999998764432                                       12 3579999999999


Q ss_pred             eeCCCEEEEEeCCCcEEEEEccc-cceeeEe------eCCCCCcEEEEEECCCC-CEEEEEecCCCeEEEEECCCCce--
Q 038577          400 MANNHSLLSASLDGTVRAWDLFR-YRNFRTF------TTPSSRQFVSLASDQSG-EVICAGTLDSFEIFVWSMKTGRL--  469 (860)
Q Consensus       400 ~~~~~~l~s~~~dg~i~~wd~~~-~~~~~~~------~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~i~v~d~~~~~~--  469 (860)
                      +|++++|+++ .|+.|++||+.+ .+....+      ...+...+.+++|+|++ .++++++.|+ .|++||+++++.  
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg-~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG-TIRLCDMRASALCD  263 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS-CEEEEETTTCSSSC
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC-eEEEEECcCCcccc
Confidence            9999999998 799999999984 4444432      22455679999999999 9999999998 999999999887  


Q ss_pred             --EEEecCccc------------CeEEEEEcCCCCEEEEEeCCCcEEEEEccC-CcceeEEcccCCC-------------
Q 038577          470 --LDILSGHEG------------PVHGLVFSPTNATLASSSWDKTVRLWNVFE-GKGSVESFPHTHD-------------  521 (860)
Q Consensus       470 --~~~~~~h~~------------~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~-------------  521 (860)
                        ...+.+|..            .|.+++|+|++++|++++. +.|++||+.. ++....+..|...             
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i  342 (447)
T 3dw8_B          264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI  342 (447)
T ss_dssp             TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred             ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence              788888876            9999999999999999998 9999999987 6656666566431             


Q ss_pred             --eEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCcccc-------------ccccccccCCCCcEEE
Q 038577          522 --VLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMT-------------DRRSAANSSSGKCFTT  586 (860)
Q Consensus       522 --v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~i~~  586 (860)
                        +..++|+|++++|++++.||.|++||+.+++.+ .+..+..........             .............|..
T Consensus       343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  421 (447)
T 3dw8_B          343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILH  421 (447)
T ss_dssp             GCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCE
T ss_pred             ccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeeecccccccccccCCccccccCCcccccccccccccCCceeE
Confidence              334999999999999999999999999998876 444443221111000             0001111234567899


Q ss_pred             EEEecCCCEEEEecCCCeEEEEEC
Q 038577          587 LCYSADGSYILAGGSSKYICMYDV  610 (860)
Q Consensus       587 l~~s~~g~~l~~~~~dg~v~vwd~  610 (860)
                      ++|+|+|++|++++.++ +++|..
T Consensus       422 ~~~~p~~~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          422 TAWHPKENIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             EEECSSSSEEEEECSSC-EEEEEC
T ss_pred             EEECCCCCEEEEEecce-eeeecc
Confidence            99999999999998877 777764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=3.4e-32  Score=293.88  Aligned_cols=277  Identities=22%  Similarity=0.372  Sum_probs=240.6

Q ss_pred             cCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE
Q 038577          305 SREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCF  384 (860)
Q Consensus       305 ~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  384 (860)
                      +...|.++.+  +++.+++++.+ |.|++||+.+++....+.+|...|.+++|  +++.+++|+.||.|++||+.+++.+
T Consensus       132 ~~~~v~~~~~--d~~~l~~g~~d-g~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~  206 (435)
T 1p22_A          132 TSKGVYCLQY--DDQKIVSGLRD-NTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEML  206 (435)
T ss_dssp             SCCCEEEEEC--CSSEEEEEESS-SCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEE
T ss_pred             CCCcEEEEEE--CCCEEEEEeCC-CeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEE
Confidence            4456776665  78898888776 99999999999999999999999999998  7889999999999999999999999


Q ss_pred             EEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceee--EeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEE
Q 038577          385 VTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR--TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVW  462 (860)
Q Consensus       385 ~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~  462 (860)
                      ..+..|...|.+++|++  ..+++++.||.|++||+.++....  .....+...+.++.+  +++++++++.|+ .|++|
T Consensus       207 ~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg-~i~vw  281 (435)
T 1p22_A          207 NTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDR-TIKVW  281 (435)
T ss_dssp             EEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTS-EEEEE
T ss_pred             EEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCC-eEEEE
Confidence            99999999999999974  499999999999999998877553  344456668888888  789999999998 99999


Q ss_pred             ECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCe
Q 038577          463 SMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQ  542 (860)
Q Consensus       463 d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  542 (860)
                      |+++++.+..+.+|...|.++++  ++.++++++.||.|++||+.+++....+..|...|.+++|  ++.+|++|+.||.
T Consensus       282 d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~  357 (435)
T 1p22_A          282 NTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK  357 (435)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSC
T ss_pred             ECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCc
Confidence            99999999999999999999999  5789999999999999999999988888899999999999  7889999999999


Q ss_pred             EEEEeCCCCc---------eeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCc
Q 038577          543 IHFWDPLNGE---------LMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQ  613 (860)
Q Consensus       543 i~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~  613 (860)
                      |++||+.+++         .+..+.+|..                    .|.+++|  ++++|++++.||.|++||+.++
T Consensus       358 i~vwd~~~~~~~~~~~~~~~~~~~~~h~~--------------------~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~  415 (435)
T 1p22_A          358 IKVWDLVAALDPRAPAGTLCLRTLVEHSG--------------------RVFRLQF--DEFQIVSSSHDDTILIWDFLND  415 (435)
T ss_dssp             EEEEEHHHHTSTTSCTTTTEEEEECCCSS--------------------CCCCEEE--CSSCEEECCSSSEEEEEC----
T ss_pred             EEEEECCCCCCccccccchheeeccCCCC--------------------CeEEEEe--CCCEEEEEeCCCEEEEEECCCC
Confidence            9999987765         6677766654                    5899999  8899999999999999999887


Q ss_pred             eEEE
Q 038577          614 VLLR  617 (860)
Q Consensus       614 ~~~~  617 (860)
                      ....
T Consensus       416 ~~~~  419 (435)
T 1p22_A          416 PAAQ  419 (435)
T ss_dssp             ----
T ss_pred             CCcc
Confidence            6554

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=6.1e-32  Score=291.87  Aligned_cols=280  Identities=21%  Similarity=0.392  Sum_probs=242.7

Q ss_pred             CCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceE
Q 038577          262 QAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESY  341 (860)
Q Consensus       262 ~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~  341 (860)
                      .+...|.++.+  +++.+++|+.||.|++||+.+++....+..|...|.+++|  +++.+++++.+ |.|++||+.+++.
T Consensus       131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~d-g~i~vwd~~~~~~  205 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSD-STVRVWDVNTGEM  205 (435)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETT-SCEEEEESSSCCE
T ss_pred             CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCC-CeEEEEECCCCcE
Confidence            45567888876  7899999999999999999999999999999999999998  78888888766 9999999999999


Q ss_pred             EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE---EEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEE
Q 038577          342 ILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCF---VTFTEHTNAVTALHFMANNHSLLSASLDGTVRAW  418 (860)
Q Consensus       342 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~w  418 (860)
                      +..+.+|...|.+++|++  ..+++|+.||.|++||+.++...   ..+.+|...|.++++  +++++++++.||.|++|
T Consensus       206 ~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vw  281 (435)
T 1p22_A          206 LNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVW  281 (435)
T ss_dssp             EEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred             EEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEE
Confidence            999999999999999974  59999999999999999887655   677889999999999  67899999999999999


Q ss_pred             EccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCC
Q 038577          419 DLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWD  498 (860)
Q Consensus       419 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d  498 (860)
                      |+.+++....+..+ ...+.++.+  ++.++++++.|+ .|++||+++++.+..+.+|...|.+++|  ++.+|++++.|
T Consensus       282 d~~~~~~~~~~~~~-~~~v~~~~~--~~~~l~~g~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~d  355 (435)
T 1p22_A          282 NTSTCEFVRTLNGH-KRGIACLQY--RDRLVVSGSSDN-TIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYD  355 (435)
T ss_dssp             ETTTCCEEEEEECC-SSCEEEEEE--ETTEEEEEETTS-CEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETT
T ss_pred             ECCcCcEEEEEcCC-CCcEEEEEe--CCCEEEEEeCCC-eEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCC
Confidence            99999988888754 457788887  578999999998 9999999999999999999999999999  78999999999


Q ss_pred             CcEEEEEccCCc---------ceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEe
Q 038577          499 KTVRLWNVFEGK---------GSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIE  558 (860)
Q Consensus       499 g~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  558 (860)
                      |.|++||+.++.         ....+..|...|.+++|  ++++|++++.||.|++||+.+........
T Consensus       356 g~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~  422 (435)
T 1p22_A          356 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEP  422 (435)
T ss_dssp             SCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----------
T ss_pred             CcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCC
Confidence            999999997665         56677789999999999  78899999999999999998876554443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4.7e-33  Score=285.75  Aligned_cols=245  Identities=17%  Similarity=0.220  Sum_probs=203.7

Q ss_pred             ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--eEEEeecCCCceEEEEEee--CCCEEEEEeCCCcEEEEEc
Q 038577          345 QQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGF--CFVTFTEHTNAVTALHFMA--NNHSLLSASLDGTVRAWDL  420 (860)
Q Consensus       345 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~dg~i~~wd~  420 (860)
                      +.+|...|.+++|+|+|++|++|+.|++|++||+.++.  .+..+.+|..+|.+++|++  ++++|++++.|++|++||+
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~   88 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE   88 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECC
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEEC
Confidence            36899999999999999999999999999999998775  4678899999999999986  4889999999999999999


Q ss_pred             cccc--eeeEeeCCCCCcEEEEEECCC--CCEEEEEecCCCeEEEEECCCCce---EEEecCcccCeEEEEEcCC-----
Q 038577          421 FRYR--NFRTFTTPSSRQFVSLASDQS--GEVICAGTLDSFEIFVWSMKTGRL---LDILSGHEGPVHGLVFSPT-----  488 (860)
Q Consensus       421 ~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~i~v~d~~~~~~---~~~~~~h~~~v~~l~~s~~-----  488 (860)
                      .+++  ....+ ..+...+.+++|+|+  +.++++++.|+ .|++||++.+..   ...+.+|...|.+++|+|+     
T Consensus        89 ~~~~~~~~~~~-~~h~~~V~~v~~~p~~~g~~lasgs~D~-~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  166 (316)
T 3bg1_A           89 ENGTWEKSHEH-AGHDSSVNSVCWAPHDYGLILACGSSDG-AISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS  166 (316)
T ss_dssp             SSSCCCEEEEE-CCCSSCCCEEEECCTTTCSCEEEECSSS-CEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred             CCCcceEEEEc-cCCCCceEEEEECCCCCCcEEEEEcCCC-CEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence            8764  23333 345568999999998  88999999998 999999987642   3456789999999999997     


Q ss_pred             ------------CCEEEEEeCCCcEEEEEccCCc---ceeEEcccCCCeEEEEEeeCC----CEEEEEeCCCeEEEEeCC
Q 038577          489 ------------NATLASSSWDKTVRLWNVFEGK---GSVESFPHTHDVLTVVYRPDG----RQLACSTLDGQIHFWDPL  549 (860)
Q Consensus       489 ------------~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg~i~iwd~~  549 (860)
                                  +++|++++.|+.|++||+....   ....+..|...|.+++|+|++    ++|++++.||+|++|++.
T Consensus       167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~  246 (316)
T 3bg1_A          167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD  246 (316)
T ss_dssp             ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred             ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence                        4789999999999999997552   344556799999999999986    899999999999999987


Q ss_pred             CCc----eeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECC
Q 038577          550 NGE----LMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVA  611 (860)
Q Consensus       550 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~  611 (860)
                      +..    ....+..|.                    ..|.+++|+|+|++|++++.|+.|++|+..
T Consensus       247 ~~~~~~~~~~~~~~~~--------------------~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          247 DASSNTWSPKLLHKFN--------------------DVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             STTCCCCBCCEEEECS--------------------SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             CccccchhhhhhhcCC--------------------CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            631    122233333                    359999999999999999999999999986

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.9e-32  Score=285.58  Aligned_cols=262  Identities=17%  Similarity=0.194  Sum_probs=219.2

Q ss_pred             EEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC--CCeeEEEeecCCCceEEEEEeeC--CCEEEEEeCCCcEE
Q 038577          341 YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVS--SGFCFVTFTEHTNAVTALHFMAN--NHSLLSASLDGTVR  416 (860)
Q Consensus       341 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~dg~i~  416 (860)
                      .+..+.+|...|.+++|+|++++|++|+.||.|++||+.  ++..+..+.+|...|.+++|+++  +++|++++.||.|+
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~   82 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   82 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence            344567899999999999999999999999999999998  56777888999999999999977  89999999999999


Q ss_pred             EEEccccc--eeeEeeCCCCCcEEEEEECCC--CCEEEEEecCCCeEEEEECCCCc--eEEEecCcccCeEEEEEcC---
Q 038577          417 AWDLFRYR--NFRTFTTPSSRQFVSLASDQS--GEVICAGTLDSFEIFVWSMKTGR--LLDILSGHEGPVHGLVFSP---  487 (860)
Q Consensus       417 ~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~i~v~d~~~~~--~~~~~~~h~~~v~~l~~s~---  487 (860)
                      +||+.+++  ....+ ..+...+.+++++|+  +.++++++.++ .|++||+.++.  ....+.+|...|.+++|+|   
T Consensus        83 iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~-~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  160 (379)
T 3jrp_A           83 IWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDG-KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  160 (379)
T ss_dssp             EEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTS-EEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred             EEEcCCCceeEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCC-cEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence            99999886  33333 335668999999999  99999999999 99999999873  4556778999999999999   


Q ss_pred             ----------CCCEEEEEeCCCcEEEEEccCCcce----eEEcccCCCeEEEEEeeC---CCEEEEEeCCCeEEEEeCCC
Q 038577          488 ----------TNATLASSSWDKTVRLWNVFEGKGS----VESFPHTHDVLTVVYRPD---GRQLACSTLDGQIHFWDPLN  550 (860)
Q Consensus       488 ----------~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~iwd~~~  550 (860)
                                ++.++++++.||.|++||+.++...    ..+..|...|.+++|+|+   +++|++++.||.|++||+.+
T Consensus       161 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~  240 (379)
T 3jrp_A          161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  240 (379)
T ss_dssp             ---------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             cccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence                      6999999999999999999877533    345579999999999999   89999999999999999988


Q ss_pred             CceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEE
Q 038577          551 GELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRF  619 (860)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~  619 (860)
                      +..........               ...+...|++++|+|+|++|++++.||.|++|++..+.....+
T Consensus       241 ~~~~~~~~~~~---------------~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~  294 (379)
T 3jrp_A          241 EQGPWKKTLLK---------------EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPA  294 (379)
T ss_dssp             TTSCCEEEESS---------------SSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEEEE
T ss_pred             CCccceeeeec---------------cccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCccccc
Confidence            75221111100               0112346999999999999999999999999999865544433

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=6e-32  Score=282.62  Aligned_cols=278  Identities=13%  Similarity=0.094  Sum_probs=245.6

Q ss_pred             cCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCce---eEEEEeecCceeEEEEEeeCCC-EEEEEEccCCcEEEEEc
Q 038577          261 SQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFV---CIHLLSISREKITTAVFNELGN-WLVFGCAKLGQLLVWEW  336 (860)
Q Consensus       261 ~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~---~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~~~g~i~v~d~  336 (860)
                      .+|...|.+++|+|++++|++++.||.|++|++.++.   ....+..+...|.+++|+|+++ .+++++.+ |.|++||+
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~~wd~   86 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ-GEILKVDL   86 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT-SCEEEECS
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCC-CeEEEEEe
Confidence            4688899999999999999999999999999998776   3455668889999999999999 88888765 99999999


Q ss_pred             -cCceEEEEecC--cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---------CeeEEEeecCCCceEEEEEeeCCC
Q 038577          337 -RSESYILKQQG--HYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS---------GFCFVTFTEHTNAVTALHFMANNH  404 (860)
Q Consensus       337 -~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~i~~~~~~~  404 (860)
                       .++.. ..+.+  |...|.+++|+| +..+++++.|+.|++||+.+         ++.+..+. |...|.+++|+|++ 
T Consensus        87 ~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-  162 (342)
T 1yfq_A           87 IGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR-  162 (342)
T ss_dssp             SSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE-
T ss_pred             ccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc-
Confidence             77755 56677  999999999999 99999999999999999987         66666665 88999999999886 


Q ss_pred             EEEEEeCCCcEEEEEccc-cce-eeEeeCCCCCcEEEEEECC-CCCEEEEEecCCCeEEEEECCCC------ceEEEecC
Q 038577          405 SLLSASLDGTVRAWDLFR-YRN-FRTFTTPSSRQFVSLASDQ-SGEVICAGTLDSFEIFVWSMKTG------RLLDILSG  475 (860)
Q Consensus       405 ~l~s~~~dg~i~~wd~~~-~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~v~d~~~~------~~~~~~~~  475 (860)
                       +++++.|+.|++||+.+ +.. ...........+.+++++| +++++++++.++ .+++|+++..      +....+.+
T Consensus       163 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg-~i~i~~~~~~~~~~~~~~~~~~~~  240 (342)
T 1yfq_A          163 -LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG-RVAVEFFDDQGDDYNSSKRFAFRC  240 (342)
T ss_dssp             -EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS-EEEEEECCTTCCSTTCTTCEEEEC
T ss_pred             -EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC-cEEEEEEcCCCcccccccceeeec
Confidence             99999999999999988 553 3445556677899999999 999999999998 9999999887      78888888


Q ss_pred             ccc---------CeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEccc-CCCeEEEEEeeCCCEEEEEeCCCe-EE
Q 038577          476 HEG---------PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPH-THDVLTVVYRPDGRQLACSTLDGQ-IH  544 (860)
Q Consensus       476 h~~---------~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~-i~  544 (860)
                      |..         .|.+++|+|++++|++++.||.|++||+.+++....+..| ...|.+++  |++++|++++.||. .+
T Consensus       241 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~  318 (342)
T 1yfq_A          241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKT  318 (342)
T ss_dssp             CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHH
T ss_pred             ccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcccc
Confidence            865         9999999999999999999999999999999877777787 99999999  99999999999998 55


Q ss_pred             EEe
Q 038577          545 FWD  547 (860)
Q Consensus       545 iwd  547 (860)
                      .|.
T Consensus       319 ~~~  321 (342)
T 1yfq_A          319 NAA  321 (342)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            555

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=4.3e-32  Score=284.94  Aligned_cols=311  Identities=13%  Similarity=0.142  Sum_probs=227.6

Q ss_pred             EeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccC----eEEEEee-cCCceeEEEECC--CCCEEEEE-eCCeE
Q 038577           45 VTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCH----VVLHRVR-FKYPVNAILFSP--NGKYIAVG-TGKLV  116 (860)
Q Consensus        45 ~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~----~~~~~~~-~~~~v~~~~fsp--dg~~la~~-~~~~i  116 (860)
                      ..++.+|...|++++|+|+|++||+++.||.|++||+.++    +.+..+. |..+|.+++|+|  |+++|+++ .|+.|
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            3456699999999999999999999999999999999976    4555555 899999999999  69999998 78999


Q ss_pred             EEEeCCCCCcc--cceeEEEEEeeccCCCeEEEEEcCC--CCeEEEeecCCeEEEEeecccccCccccc--------ceE
Q 038577          117 QIWRSPGFKKE--VFAFELIRTLADCNDKVTALNWSPD--SNYLLVGSKDLAVRLFYVKEKLKGIHTNK--------PFL  184 (860)
Q Consensus       117 ~iwd~~~~~~~--~~~~~~~~~~~~h~~~v~~l~~s~d--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~--------~~~  184 (860)
                      ++||+.+++..  ...+.+...+.+|.+.|.+++|+|+  +++|++++.||.|++||+.+. +......        ...
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~  162 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEP-SDLRSWTLTSEMKVLSIP  162 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSST-TCTTCCEEEEEEESCSCC
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCCh-HHhccccccccccccccc
Confidence            99999886421  1123467888899999999999999  999999999999999999877 2211000        011


Q ss_pred             eecCCCcEEEEEEccC---CCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecccc
Q 038577          185 LLGHRDSVVGCFFSVD---KKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFS  261 (860)
Q Consensus       185 ~~~h~~~i~~~~~~~~---~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (860)
                      ..+|...+.++.|+|+   +.     .+++++.|+.+.+|+...+..                          .....+.
T Consensus       163 ~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~  211 (351)
T 3f3f_A          163 PANHLQSDFCLSWCPSRFSPE-----KLAVSALEQAIIYQRGKDGKL--------------------------HVAAKLP  211 (351)
T ss_dssp             CSSCSCCCEEEEECCCSSSCC-----EEEEEETTEEEEEEECTTSCE--------------------------EEEEECC
T ss_pred             cCCcccceeEEEeccCCCCCc-----EEEEecCCCcEEEEccCCCce--------------------------eeeeecC
Confidence            2268889999999997   66     999999999998887665321                          1233456


Q ss_pred             CCCCceEEEEecCCC----CEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEcc---CCcEEEE
Q 038577          262 QAPSKVTACDYHRGL----DMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK---LGQLLVW  334 (860)
Q Consensus       262 ~~~~~v~~~~~~~~~----~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~---~g~i~v~  334 (860)
                      .|...|.+++|+|++    +++++++.||.|++||+..+..................++.......+...   ...+.+|
T Consensus       212 ~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (351)
T 3f3f_A          212 GHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQ  291 (351)
T ss_dssp             CCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------C
T ss_pred             CCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeec
Confidence            788899999999998    899999999999999997665554444333344444444444443333222   2455667


Q ss_pred             EccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 038577          335 EWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTF  387 (860)
Q Consensus       335 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  387 (860)
                      +......+..+.+|...|++++|+|++++|++++.||.|++|++.++.....+
T Consensus       292 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          292 SNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             CSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             ccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence            77777888888999999999999999999999999999999999987655443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.2e-32  Score=294.25  Aligned_cols=286  Identities=19%  Similarity=0.271  Sum_probs=243.3

Q ss_pred             EEEEEeeCCCEEEEEEccCCcEEEEEccCce----EEEEecCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC---
Q 038577          310 TTAVFNELGNWLVFGCAKLGQLLVWEWRSES----YILKQQGHYFDVNCLAYSP-DSQLLATGADDNKVKVWTVSSG---  381 (860)
Q Consensus       310 ~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~----~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~---  381 (860)
                      ..++++|+...+++.+..+|.|++|++....    ....+.+|...|.+++|+| ++++|++|+.||.|++||+.++   
T Consensus        38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~  117 (402)
T 2aq5_A           38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV  117 (402)
T ss_dssp             CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS
T ss_pred             CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc
Confidence            4577777777777666667999999996543    2334578999999999999 9999999999999999999987   


Q ss_pred             ----eeEEEeecCCCceEEEEEeeCC-CEEEEEeCCCcEEEEEccccceeeEee-CCCCCcEEEEEECCCCCEEEEEecC
Q 038577          382 ----FCFVTFTEHTNAVTALHFMANN-HSLLSASLDGTVRAWDLFRYRNFRTFT-TPSSRQFVSLASDQSGEVICAGTLD  455 (860)
Q Consensus       382 ----~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~  455 (860)
                          ..+..+.+|...|.+++|+|++ +.|++++.||.|++||+.+++....+. ..+...+.+++++|++.++++++.|
T Consensus       118 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  197 (402)
T 2aq5_A          118 LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD  197 (402)
T ss_dssp             SCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT
T ss_pred             cccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC
Confidence                6678889999999999999998 699999999999999999998888875 5566789999999999999999999


Q ss_pred             CCeEEEEECCCCceEEEe-cCcccC-eEEEEEcCCCCEEEEE---eCCCcEEEEEccCCccee--EEcccCCCeEEEEEe
Q 038577          456 SFEIFVWSMKTGRLLDIL-SGHEGP-VHGLVFSPTNATLASS---SWDKTVRLWNVFEGKGSV--ESFPHTHDVLTVVYR  528 (860)
Q Consensus       456 ~~~i~v~d~~~~~~~~~~-~~h~~~-v~~l~~s~~~~~l~s~---~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s  528 (860)
                      + .|++||+++++.+..+ .+|.+. +.+++|+|++++|+++   +.|+.|++||+.+.+...  ....+...+.+++|+
T Consensus       198 ~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s  276 (402)
T 2aq5_A          198 K-RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFD  276 (402)
T ss_dssp             S-EEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEE
T ss_pred             C-cEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEc
Confidence            8 9999999999999988 788876 8999999999999999   789999999998876422  233678889999999


Q ss_pred             eCCCEEEEE-eCCCeEEEEeCCCCce-eEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEE
Q 038577          529 PDGRQLACS-TLDGQIHFWDPLNGEL-MYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYIC  606 (860)
Q Consensus       529 ~~~~~l~~~-~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~  606 (860)
                      |++++|+++ +.||.|++||+.+++. +..+..+..                  ...|.+++|+|++.++++  .++.++
T Consensus       277 ~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~------------------~~~v~~~~~sp~~~~~~s--~~~~~~  336 (402)
T 2aq5_A          277 PDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSS------------------KESQRGMGYMPKRGLEVN--KCEIAR  336 (402)
T ss_dssp             TTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECC------------------SSCCSEEEECCGGGSCGG--GTEEEE
T ss_pred             CCCCEEEEEEcCCCeEEEEEecCCCcceEeeccccc------------------CCcccceEEeccccccee--cceeEE
Confidence            999999754 5799999999999885 555555431                  135899999999998875  566999


Q ss_pred             EEECCCceEE
Q 038577          607 MYDVADQVLL  616 (860)
Q Consensus       607 vwd~~~~~~~  616 (860)
                      +|++.++.+.
T Consensus       337 ~~~l~~~~~~  346 (402)
T 2aq5_A          337 FYKLHERKCE  346 (402)
T ss_dssp             EEEEETTEEE
T ss_pred             EEEcCCCcEE
Confidence            9999987643

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-31  Score=282.78  Aligned_cols=254  Identities=21%  Similarity=0.291  Sum_probs=220.8

Q ss_pred             eeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc--CceEEEEecCcccCeEEEEEcCC--CCEEEEEeCCCc
Q 038577          297 VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR--SESYILKQQGHYFDVNCLAYSPD--SQLLATGADDNK  372 (860)
Q Consensus       297 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~--~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~  372 (860)
                      +.+..+..|...|.+++|+|+++++++++.+ |.|++||+.  ++.....+.+|...|.+++|+++  +++|++++.||.
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSD-KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETT-SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECC-CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            4556778899999999999999999988766 999999998  66777788899999999999987  999999999999


Q ss_pred             EEEEECCCCe--eEEEeecCCCceEEEEEeeC--CCEEEEEeCCCcEEEEEccccceeeE-eeCCCCCcEEEEEECC---
Q 038577          373 VKVWTVSSGF--CFVTFTEHTNAVTALHFMAN--NHSLLSASLDGTVRAWDLFRYRNFRT-FTTPSSRQFVSLASDQ---  444 (860)
Q Consensus       373 i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~---  444 (860)
                      |++||+.++.  .+..+..|...|.+++|+|+  +.++++++.|+.|++||+.+...... ....+...+.+++++|   
T Consensus        81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  160 (379)
T 3jrp_A           81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  160 (379)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred             EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence            9999999987  77788889999999999999  99999999999999999988744332 2334566899999999   


Q ss_pred             ----------CCCEEEEEecCCCeEEEEECCCCc----eEEEecCcccCeEEEEEcCC---CCEEEEEeCCCcEEEEEcc
Q 038577          445 ----------SGEVICAGTLDSFEIFVWSMKTGR----LLDILSGHEGPVHGLVFSPT---NATLASSSWDKTVRLWNVF  507 (860)
Q Consensus       445 ----------~~~~l~~~~~~~~~i~v~d~~~~~----~~~~~~~h~~~v~~l~~s~~---~~~l~s~~~dg~i~iwd~~  507 (860)
                                ++.++++++.++ .|++||+++++    ....+.+|...|.+++|+|+   +++|++++.||.|++||+.
T Consensus       161 ~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~  239 (379)
T 3jrp_A          161 EEDGEHNGTKESRKFVTGGADN-LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD  239 (379)
T ss_dssp             ---------CTTCEEEEEETTS-CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             cccccccCCCCCCEEEEEeCCC-eEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence                      699999999998 99999998765    45678889999999999999   8999999999999999998


Q ss_pred             CCcce-----eEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCc
Q 038577          508 EGKGS-----VESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGE  552 (860)
Q Consensus       508 ~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  552 (860)
                      ++...     .....|...|++++|+|++++|++++.||.|++|++..+.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          240 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred             CCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence            86421     1222488899999999999999999999999999998554

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.3e-32  Score=280.59  Aligned_cols=247  Identities=18%  Similarity=0.250  Sum_probs=207.0

Q ss_pred             EEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce--EEEEecCcccCeEEEEEcC--CCCEEEEEeCCCcEEEE
Q 038577          301 LLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES--YILKQQGHYFDVNCLAYSP--DSQLLATGADDNKVKVW  376 (860)
Q Consensus       301 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~--~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iw  376 (860)
                      .+..|.+.|.+++|+|+|++|++++.+ +.|++||+.++.  .+..+.+|...|.+++|++  ++++|++|+.|++|++|
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D-~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSD-RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETT-TEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCC-CeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            345788999999999999999998776 999999998764  4567789999999999986  48999999999999999


Q ss_pred             ECCCC--eeEEEeecCCCceEEEEEeeC--CCEEEEEeCCCcEEEEEcccccee--eEeeCCCCCcEEEEEECCC-----
Q 038577          377 TVSSG--FCFVTFTEHTNAVTALHFMAN--NHSLLSASLDGTVRAWDLFRYRNF--RTFTTPSSRQFVSLASDQS-----  445 (860)
Q Consensus       377 d~~~~--~~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~dg~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~-----  445 (860)
                      |++++  .....+.+|...|.+++|+|+  +.+|++++.|+.|++||+......  ......+...+.+++|+|+     
T Consensus        87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  166 (316)
T 3bg1_A           87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS  166 (316)
T ss_dssp             CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred             ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence            99887  466778889999999999998  789999999999999999876332  2223345557788899987     


Q ss_pred             ------------CCEEEEEecCCCeEEEEECCCC---ceEEEecCcccCeEEEEEcCCC----CEEEEEeCCCcEEEEEc
Q 038577          446 ------------GEVICAGTLDSFEIFVWSMKTG---RLLDILSGHEGPVHGLVFSPTN----ATLASSSWDKTVRLWNV  506 (860)
Q Consensus       446 ------------~~~l~~~~~~~~~i~v~d~~~~---~~~~~~~~h~~~v~~l~~s~~~----~~l~s~~~dg~i~iwd~  506 (860)
                                  +.++++++.|+ .|++||++.+   +.+..+.+|...|.+++|+|++    .+|++++.||+|++|++
T Consensus       167 ~~~~~~~~~~~~~~~l~sgs~D~-~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~  245 (316)
T 3bg1_A          167 LIDHPSGQKPNYIKRFASGGCDN-LIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTC  245 (316)
T ss_dssp             ----CCSCCCCCCCBEECCBTTS-BCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEEC
T ss_pred             ccccccccCccccceEEEecCCC-eEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEc
Confidence                        47899999998 9999999765   4677889999999999999986    89999999999999999


Q ss_pred             cCCc----ceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCC
Q 038577          507 FEGK----GSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPL  549 (860)
Q Consensus       507 ~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  549 (860)
                      .+..    ....+..|...|.+++|+|++++|++++.||.|++|+..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          246 DDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             SSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             cCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            7631    122344688999999999999999999999999999975

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=2.1e-30  Score=280.53  Aligned_cols=298  Identities=15%  Similarity=0.123  Sum_probs=247.7

Q ss_pred             eEEEEECCCc--eeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEE-----ecCcccCeEEEEEcC
Q 038577          287 VFGLYQMPDF--VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILK-----QQGHYFDVNCLAYSP  359 (860)
Q Consensus       287 ~i~~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~-----~~~~~~~v~~~~~s~  359 (860)
                      .|..++..++  +.+..+..+ ..+.+++|+| +..+++++..++.|++||+.+++....     +.+|...|.+++|+|
T Consensus       102 ~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~  179 (433)
T 3bws_A          102 KLIALDKEGITHRFISRFKTG-FQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE  179 (433)
T ss_dssp             CEEECCBTTCSEEEEEEEECS-SCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG
T ss_pred             EEEEECCCCCcceEEEEEcCC-CCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC
Confidence            4445555334  455555544 3466899999 666666666668999999999988763     357888999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEE-eCCCcEEEEEccccceeeEeeCCCCCcEE
Q 038577          360 DSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSA-SLDGTVRAWDLFRYRNFRTFTTPSSRQFV  438 (860)
Q Consensus       360 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  438 (860)
                      ++..+++++.|+.|++||+.+++.+..+..|...+.+++|+|+++.++++ +.|+.|++||+.+++....+...  ..+.
T Consensus       180 ~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~  257 (433)
T 3bws_A          180 HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI--GLPR  257 (433)
T ss_dssp             GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC--SEEE
T ss_pred             CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC--CCce
Confidence            99999999999999999999999999998999999999999999888554 47999999999988877766543  4689


Q ss_pred             EEEECCCCCEEEEEec--------CCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEE-EEEeCCCcEEEEEccCC
Q 038577          439 SLASDQSGEVICAGTL--------DSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATL-ASSSWDKTVRLWNVFEG  509 (860)
Q Consensus       439 ~~~~~~~~~~l~~~~~--------~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~  509 (860)
                      +++++|+++++++++.        ++ .|++||+.+++.+..+. |...+.+++|+|+++.+ ++++.|+.|++||+.++
T Consensus       258 ~~~~~~~g~~l~~~~~~~~~~~~~dg-~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~  335 (433)
T 3bws_A          258 GLLLSKDGKELYIAQFSASNQESGGG-RLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK  335 (433)
T ss_dssp             EEEECTTSSEEEEEEEESCTTCSCCE-EEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT
T ss_pred             EEEEcCCCCEEEEEECCCCccccCCC-eEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC
Confidence            9999999999998884        55 99999999998877664 67789999999999755 66688999999999988


Q ss_pred             cceeEEcccCCCeEEEEEeeCCCEEEEEeC---------------CCeEEEEeCCCCceeEEEecccccCCCcccccccc
Q 038577          510 KGSVESFPHTHDVLTVVYRPDGRQLACSTL---------------DGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRS  574 (860)
Q Consensus       510 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  574 (860)
                      +.. ....+...+.+++|+|+|+++++++.               ||.|++||+.+++.+..+..+.             
T Consensus       336 ~~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~-------------  401 (433)
T 3bws_A          336 KVQ-KSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN-------------  401 (433)
T ss_dssp             EEE-EEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS-------------
T ss_pred             cEE-EEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCC-------------
Confidence            744 44457788999999999999998876               5799999999999988887644             


Q ss_pred             ccccCCCCcEEEEEEecCCCEEEEecC-CCeEEEEECCC
Q 038577          575 AANSSSGKCFTTLCYSADGSYILAGGS-SKYICMYDVAD  612 (860)
Q Consensus       575 ~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~v~vwd~~~  612 (860)
                              .+.+++|+|+|++|++++. |+.|++|+++.
T Consensus       402 --------~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          402 --------QPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             --------SEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             --------CCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence                    3899999999999998775 99999999863

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.5e-31  Score=282.93  Aligned_cols=293  Identities=11%  Similarity=0.172  Sum_probs=240.7

Q ss_pred             EECCCCcEEeeccCCccCeeEEEEcCC---CCEEEEEcCCCcEEEEEccc-CeEE-EEee-cCCceeEEEECCCCCEEEE
Q 038577           37 TDLIKSKTVTLPVESSSNICRIAVSPD---GTFLLTVDENQRCHFINLHC-HVVL-HRVR-FKYPVNAILFSPNGKYIAV  110 (860)
Q Consensus        37 ~d~~~~~~~~~~~~h~~~v~~va~spd---g~~la~~~~d~~i~vwd~~~-~~~~-~~~~-~~~~v~~~~fspdg~~la~  110 (860)
                      ++....+....+.+|.+.|++++|+|+   |++||+++.||.|++||+.+ +..+ ..+. |..+|.+++|+|++++|++
T Consensus        24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  103 (368)
T 3mmy_A           24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT  103 (368)
T ss_dssp             CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred             CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence            445566667778899999999999999   69999999999999999997 5554 4454 8999999999999999999


Q ss_pred             E-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEE--cCCCCeEEEeecCCeEEEEeecccccCcccccceEeec
Q 038577          111 G-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNW--SPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLG  187 (860)
Q Consensus       111 ~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~  187 (860)
                      + .|+.|++||+.+++        ...+.+|...|.+++|  +|++++|++++.||.|++||+.++      .....+..
T Consensus       104 ~~~dg~v~iwd~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~------~~~~~~~~  169 (368)
T 3mmy_A          104 ASCDKTAKMWDLSSNQ--------AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS------NPMMVLQL  169 (368)
T ss_dssp             EETTSEEEEEETTTTE--------EEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS------SCSEEEEC
T ss_pred             EcCCCcEEEEEcCCCC--------ceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC------cEEEEEec
Confidence            8 78999999999876        2346779999999999  999999999999999999999987      45666666


Q ss_pred             CCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCce
Q 038577          188 HRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKV  267 (860)
Q Consensus       188 h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  267 (860)
                      |. .+.++.+.+  .     .+++++.++.+.+|++.....                      .+    ..........+
T Consensus       170 ~~-~~~~~~~~~--~-----~~~~~~~~~~i~~~~~~~~~~----------------------~~----~~~~~~~~~~~  215 (368)
T 3mmy_A          170 PE-RCYCADVIY--P-----MAVVATAERGLIVYQLENQPS----------------------EF----RRIESPLKHQH  215 (368)
T ss_dssp             SS-CEEEEEEET--T-----EEEEEEGGGCEEEEECSSSCE----------------------EE----EECCCSCSSCE
T ss_pred             CC-CceEEEecC--C-----eeEEEeCCCcEEEEEeccccc----------------------hh----hhccccccCCC
Confidence            54 566666654  3     788999999999999986432                      11    11112233456


Q ss_pred             EEEEecCCCCE----EEEEEcCCeEEEEECCCc---eeEEEEeecCc------------eeEEEEEeeCCCEEEEEEccC
Q 038577          268 TACDYHRGLDM----VVVGFSNGVFGLYQMPDF---VCIHLLSISRE------------KITTAVFNELGNWLVFGCAKL  328 (860)
Q Consensus       268 ~~~~~~~~~~~----l~~~~~~g~i~~~~~~~~---~~~~~~~~~~~------------~i~~~~~s~~~~~l~~~~~~~  328 (860)
                      .++.+.++...    +++++.+|.|++|++...   .....+..+..            .+.+++|+|+++++++++.+ 
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d-  294 (368)
T 3mmy_A          216 RCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSD-  294 (368)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETT-
T ss_pred             ceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccC-
Confidence            66666665544    999999999999999876   55666776665            69999999999999988776 


Q ss_pred             CcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 038577          329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTV  378 (860)
Q Consensus       329 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  378 (860)
                      |.|++||+.+++.+..+..|...|.+++|+|+|++|++++.|+..+.|++
T Consensus       295 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          295 GRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             SCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred             CeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccc
Confidence            99999999999999999999999999999999999999999876555543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=8.9e-32  Score=284.66  Aligned_cols=292  Identities=19%  Similarity=0.241  Sum_probs=242.3

Q ss_pred             ECCCceeEEEEeecCceeEEEEEeeC---CCEEEEEEccCCcEEEEEccC-ceEE-EEecCcccCeEEEEEcCCCCEEEE
Q 038577          292 QMPDFVCIHLLSISREKITTAVFNEL---GNWLVFGCAKLGQLLVWEWRS-ESYI-LKQQGHYFDVNCLAYSPDSQLLAT  366 (860)
Q Consensus       292 ~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~~~g~i~v~d~~~-~~~~-~~~~~~~~~v~~~~~s~~~~~l~~  366 (860)
                      +....+.+..+..|...|.+++|+|+   |+.+++++.+ |.|++||+.+ +... ..+.+|...|.+++|+|++++|++
T Consensus        25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  103 (368)
T 3mmy_A           25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWA-NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT  103 (368)
T ss_dssp             SSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETT-SEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred             CCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCC-CcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence            44566677788899999999999999   5777777665 9999999997 4444 667889999999999999999999


Q ss_pred             EeCCCcEEEEECCCCeeEEEeecCCCceEEEEE--eeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECC
Q 038577          367 GADDNKVKVWTVSSGFCFVTFTEHTNAVTALHF--MANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQ  444 (860)
Q Consensus       367 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  444 (860)
                      ++.||.|++||+.++.... +..|...|.+++|  +++++++++++.||.|++||+.+++....+..+.  .+.++.+. 
T Consensus       104 ~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~-  179 (368)
T 3mmy_A          104 ASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE--RCYCADVI-  179 (368)
T ss_dssp             EETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS--CEEEEEEE-
T ss_pred             EcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC--CceEEEec-
Confidence            9999999999999988776 5579999999999  8899999999999999999999999888887654  44555554 


Q ss_pred             CCCEEEEEecCCCeEEEEECCCCceEEEe--cCcccCeEEEEEcCCCCE----EEEEeCCCcEEEEEccCC---cceeEE
Q 038577          445 SGEVICAGTLDSFEIFVWSMKTGRLLDIL--SGHEGPVHGLVFSPTNAT----LASSSWDKTVRLWNVFEG---KGSVES  515 (860)
Q Consensus       445 ~~~~l~~~~~~~~~i~v~d~~~~~~~~~~--~~h~~~v~~l~~s~~~~~----l~s~~~dg~i~iwd~~~~---~~~~~~  515 (860)
                       +..+++++.++ .+.+|++.........  ..+...+.++++.++...    +++++.||.|++||+...   .....+
T Consensus       180 -~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~  257 (368)
T 3mmy_A          180 -YPMAVVATAER-GLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTF  257 (368)
T ss_dssp             -TTEEEEEEGGG-CEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEE
T ss_pred             -CCeeEEEeCCC-cEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceee
Confidence             45777888887 8999999876544332  234456677777666554    999999999999999887   334455


Q ss_pred             cccCC------------CeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCc
Q 038577          516 FPHTH------------DVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKC  583 (860)
Q Consensus       516 ~~~~~------------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  583 (860)
                      ..|..            .|++++|+|++++|++++.||.|++||+.+++++..+.+|..                    .
T Consensus       258 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------------------~  317 (368)
T 3mmy_A          258 KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQ--------------------P  317 (368)
T ss_dssp             ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS--------------------C
T ss_pred             eeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCC--------------------C
Confidence            55554            799999999999999999999999999999999999887765                    5


Q ss_pred             EEEEEEecCCCEEEEecCCCeEEEEEC
Q 038577          584 FTTLCYSADGSYILAGGSSKYICMYDV  610 (860)
Q Consensus       584 i~~l~~s~~g~~l~~~~~dg~v~vwd~  610 (860)
                      |++++|+|+|++|++++.|+..+.|++
T Consensus       318 v~~~~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          318 ISACCFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             EEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred             ceEEEECCCCCeEEEEecccccccccc
Confidence            999999999999999999875554443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=7.6e-31  Score=273.90  Aligned_cols=310  Identities=11%  Similarity=0.082  Sum_probs=224.0

Q ss_pred             EEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEE-EEEe
Q 038577          290 LYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLL-ATGA  368 (860)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~  368 (860)
                      +|++.+.+.+.....|...|.+++|+|||+.+++++.  ..+++|+..++........+  .+..+++.++++.+ ++++
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~--~~~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~   78 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTL--KSFEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTG   78 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECS--SEEEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECS
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcC--CEEEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEEC
Confidence            4555566667777888999999999999999887764  35789999988776654332  47888999988887 4677


Q ss_pred             CCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcccc-ceeeEeeCCCCCcEEEEEECCCCC
Q 038577          369 DDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRY-RNFRTFTTPSSRQFVSLASDQSGE  447 (860)
Q Consensus       369 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  447 (860)
                      .|+.|++||..+++.+..+. +...|.++.++++.  ++++ .|+.|++||+.+. +.+..+..    ....+++++  .
T Consensus        79 ~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~--~  148 (355)
T 3vu4_A           79 VKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR----FGGVCEFSN--G  148 (355)
T ss_dssp             STTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE----EEEEEEEET--T
T ss_pred             CccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc----CCceEEEEc--c
Confidence            78999999999999998886 67799999998774  4444 4789999999987 66665554    334556666  6


Q ss_pred             EEEEE--ecCCCeEEEEECCCCc----------------eEEEecCcccCeEEEEEcCCCCEEEEEeCCCc-EEEEEccC
Q 038577          448 VICAG--TLDSFEIFVWSMKTGR----------------LLDILSGHEGPVHGLVFSPTNATLASSSWDKT-VRLWNVFE  508 (860)
Q Consensus       448 ~l~~~--~~~~~~i~v~d~~~~~----------------~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~-i~iwd~~~  508 (860)
                      +++++  +.++ .|++||+.+++                .+..+.+|.++|++++|+|++++|++++.||+ |++||+.+
T Consensus       149 ~la~~sg~~~g-~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~  227 (355)
T 3vu4_A          149 LLVYSNEFNLG-QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED  227 (355)
T ss_dssp             EEEEEESSCTT-CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT
T ss_pred             EEEEeCCCcCc-EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence            66664  5555 99999999865                26788999999999999999999999999998 99999999


Q ss_pred             CcceeEEc-c-cCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeE--EEeccc-ccCCCccccccccccccCCCCc
Q 038577          509 GKGSVESF-P-HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMY--TIEGRR-DISGGRLMTDRRSAANSSSGKC  583 (860)
Q Consensus       509 ~~~~~~~~-~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  583 (860)
                      ++.+..+. + |...|.+++|+|+|++|++++.|+.|++||+.++....  .+.... ......................
T Consensus       228 ~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (355)
T 3vu4_A          228 GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVR  307 (355)
T ss_dssp             CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCC
T ss_pred             CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCC
Confidence            98777776 4 99999999999999999999999999999998764221  111100 0000000000000011111223


Q ss_pred             EEEEEEecCCCEEEEecCCCeEEEEECCCce
Q 038577          584 FTTLCYSADGSYILAGGSSKYICMYDVADQV  614 (860)
Q Consensus       584 i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~  614 (860)
                      ...++|++||++|++++.||.+++|++..++
T Consensus       308 ~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          308 GCKIAWISESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             CCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred             ceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence            4679999999999999999999999987654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=2.5e-29  Score=267.96  Aligned_cols=325  Identities=13%  Similarity=0.145  Sum_probs=257.0

Q ss_pred             EEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEE
Q 038577          278 MVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAY  357 (860)
Q Consensus       278 ~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~  357 (860)
                      .+++++.++.|++||+.+++.+..+..+. .+.+++|+|+|+.+++++..++.|++||+.+++.+..+..+. .+.+++|
T Consensus         4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~   81 (391)
T 1l0q_A            4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAV   81 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEE
T ss_pred             EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEE
Confidence            57788899999999999999998888765 589999999999998777667999999999999888876655 8999999


Q ss_pred             cCCCCEEEEE-eCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEE-EEEeCCCcEEEEEccccceeeEeeCCCCC
Q 038577          358 SPDSQLLATG-ADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSL-LSASLDGTVRAWDLFRYRNFRTFTTPSSR  435 (860)
Q Consensus       358 s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~s~~~dg~i~~wd~~~~~~~~~~~~~~~~  435 (860)
                      +|++++++++ +.++.|++||+.+++.+..+.. ...+.+++|+|+++.+ ++++.|+.|++||+.+++....+...  .
T Consensus        82 spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--~  158 (391)
T 1l0q_A           82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG--R  158 (391)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC--S
T ss_pred             CCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC--C
Confidence            9999988654 4679999999999998888764 4578999999999877 68888999999999999888777654  3


Q ss_pred             cEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEe---CCCcEEEEEccCCcce
Q 038577          436 QFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSS---WDKTVRLWNVFEGKGS  512 (860)
Q Consensus       436 ~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~---~dg~i~iwd~~~~~~~  512 (860)
                      .+..++++|+++.+++++..++.|++||+++++....+. +...+.+++|+|+++++++++   .++.|++||+.+++..
T Consensus       159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~  237 (391)
T 1l0q_A          159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT  237 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred             CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE
Confidence            568999999999886554444499999999998888776 556789999999999999888   6899999999988755


Q ss_pred             eEEcccCCCeEEEEEeeCCCEE-EEEeCCCeEEEEeCCCCceeEEEecccccCC-CccccccccccccCCCCcEEEEEEe
Q 038577          513 VESFPHTHDVLTVVYRPDGRQL-ACSTLDGQIHFWDPLNGELMYTIEGRRDISG-GRLMTDRRSAANSSSGKCFTTLCYS  590 (860)
Q Consensus       513 ~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~s  590 (860)
                      ..+..+ ..+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+..... +.....      ...+.......|+
T Consensus       238 ~~~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~a~fs  310 (391)
T 1l0q_A          238 ARIPVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGS------IPVQPVYPSADFK  310 (391)
T ss_dssp             EEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEE------CSSCCCCCBCCEE
T ss_pred             EEEecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeec------ccccccccccccc
Confidence            554444 468999999999987 5668899999999999999998877653211 100000      0000111122233


Q ss_pred             cCC----------CEEEEecCCCeEEEEECCCceE
Q 038577          591 ADG----------SYILAGGSSKYICMYDVADQVL  615 (860)
Q Consensus       591 ~~g----------~~l~~~~~dg~v~vwd~~~~~~  615 (860)
                      .+.          ..+...+.|..+++|++.+|..
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~  345 (391)
T 1l0q_A          311 SNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS  345 (391)
T ss_dssp             ESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred             cccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence            222          3455666788999999988864

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.98  E-value=4.9e-30  Score=278.12  Aligned_cols=279  Identities=14%  Similarity=0.111  Sum_probs=231.2

Q ss_pred             ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce---EEEEecC------------------------------------
Q 038577          307 EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES---YILKQQG------------------------------------  347 (860)
Q Consensus       307 ~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~---~~~~~~~------------------------------------  347 (860)
                      .++.+++|+++|+.++++. . +.|++||+.+++   .+..+..                                    
T Consensus         5 ~p~~~v~~s~dg~~l~~~~-~-~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAII-K-NCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             CCCCEEEECSSSSEEEEEE-T-TEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEEe-C-CeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            4788999999999666554 3 899999999887   5544432                                    


Q ss_pred             ------------------cccCeEEEEEcCCCCEE-EEEeCCCcEEEEECC--CCeeEEEee--cCCCceEEEEEeeCCC
Q 038577          348 ------------------HYFDVNCLAYSPDSQLL-ATGADDNKVKVWTVS--SGFCFVTFT--EHTNAVTALHFMANNH  404 (860)
Q Consensus       348 ------------------~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~--~~~~~v~~i~~~~~~~  404 (860)
                                        |...|.+++|+|++++| ++++.||.|++||+.  ++..+..+.  .|...|.+++|+|+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence                              33369999999999996 899999999999999  888888876  5678999999999999


Q ss_pred             EEEEEeCCCcEEEEEccccceee----EeeCCCCCcEEEEEECCC---CCEEEEEecCCCeEEEEECCCCceEEE-ecCc
Q 038577          405 SLLSASLDGTVRAWDLFRYRNFR----TFTTPSSRQFVSLASDQS---GEVICAGTLDSFEIFVWSMKTGRLLDI-LSGH  476 (860)
Q Consensus       405 ~l~s~~~dg~i~~wd~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~i~v~d~~~~~~~~~-~~~h  476 (860)
                      +|++++.+|.+++|++.+++...    .+. .+...+.+++|+|+   ++++++++.|+ .|++||+.+++.+.. +.+|
T Consensus       163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~l~s~~~d~-~i~vwd~~~~~~~~~~~~~h  240 (450)
T 2vdu_B          163 TVIIADKFGDVYSIDINSIPEEKFTQEPIL-GHVSMLTDVHLIKDSDGHQFIITSDRDE-HIKISHYPQCFIVDKWLFGH  240 (450)
T ss_dssp             EEEEEETTSEEEEEETTSCCCSSCCCCCSE-ECSSCEEEEEEEECTTSCEEEEEEETTS-CEEEEEESCTTCEEEECCCC
T ss_pred             EEEEEeCCCcEEEEecCCcccccccceeee-cccCceEEEEEcCCCCCCcEEEEEcCCC-cEEEEECCCCceeeeeecCC
Confidence            99999999999999998876543    333 34468999999999   99999999998 999999999998877 5689


Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc-------------------------ccCCCeEEEEEeeCC
Q 038577          477 EGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF-------------------------PHTHDVLTVVYRPDG  531 (860)
Q Consensus       477 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------------~~~~~v~~~~~s~~~  531 (860)
                      ...|.+++|+ ++++|++++.|+.|++||+.+++....+.                         .....+.+++|+|++
T Consensus       241 ~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~  319 (450)
T 2vdu_B          241 KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL  319 (450)
T ss_dssp             SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS
T ss_pred             CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC
Confidence            9999999999 99999999999999999999988655554                         224578999999999


Q ss_pred             CEEEEEe-CCCeEEEEeC--CCC---ceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecC----
Q 038577          532 RQLACST-LDGQIHFWDP--LNG---ELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGS----  601 (860)
Q Consensus       532 ~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~----  601 (860)
                      ++|++++ .++.|++|++  .++   +.+..+..+.                     .|.+++|+|++.++++++.    
T Consensus       320 ~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~---------------------~v~~~~~~~~~~~v~~~~~~~~~  378 (450)
T 2vdu_B          320 PFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPY---------------------NVISLSAHNDEFQVTLDNKESSG  378 (450)
T ss_dssp             SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSS---------------------CEEEEEEETTEEEEEECCTTCCS
T ss_pred             CEEEEEECCCCeEEEEEeccCCCCceeeccEeccCC---------------------ceEEEEecCCcEEEEEecccCCC
Confidence            9999999 8999999999  665   6666666653                     4899999996544444443    


Q ss_pred             --CCeEEEEECC
Q 038577          602 --SKYICMYDVA  611 (860)
Q Consensus       602 --dg~v~vwd~~  611 (860)
                        +..|.+|.+.
T Consensus       379 ~~~~~i~v~~~~  390 (450)
T 2vdu_B          379 VQKNFAKFIEYN  390 (450)
T ss_dssp             SCCCSEEEEEEE
T ss_pred             CCCcceEEEEEE
Confidence              4557888764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.98  E-value=3e-29  Score=271.42  Aligned_cols=322  Identities=11%  Similarity=0.066  Sum_probs=259.2

Q ss_pred             CccCeeEEE---EcCCCCEEEEEc--------------CCC--cEEEEEcccC--eEEEEeecCCceeEEEECCCCCEEE
Q 038577           51 SSSNICRIA---VSPDGTFLLTVD--------------ENQ--RCHFINLHCH--VVLHRVRFKYPVNAILFSPNGKYIA  109 (860)
Q Consensus        51 h~~~v~~va---~spdg~~la~~~--------------~d~--~i~vwd~~~~--~~~~~~~~~~~v~~~~fspdg~~la  109 (860)
                      ....+..++   |+|+++.++..+              .++  .|..||..++  +.+..+.....+.+++|+|++.+++
T Consensus        59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  138 (433)
T 3bws_A           59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAI  138 (433)
T ss_dssp             TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEE
T ss_pred             cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEE
Confidence            344567777   888877665432              223  4455555445  6667777677788999999777777


Q ss_pred             EE-eCCeEEEEeCCCCCcccceeEEEE-----EeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccce
Q 038577          110 VG-TGKLVQIWRSPGFKKEVFAFELIR-----TLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPF  183 (860)
Q Consensus       110 ~~-~~~~i~iwd~~~~~~~~~~~~~~~-----~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~  183 (860)
                      ++ .++.|++||+.+++.       ..     .+.+|.+.|.+++|+|+++++++++.|+.|++||+.++      ....
T Consensus       139 ~~~~~~~i~~~d~~~g~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~------~~~~  205 (433)
T 3bws_A          139 PLLEDEGMDVLDINSGQT-------VRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL------AYKA  205 (433)
T ss_dssp             EBTTSSSEEEEETTTCCE-------EEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC------CEEE
T ss_pred             EeCCCCeEEEEECCCCeE-------eeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc------eEEE
Confidence            66 567899999998873       33     34588899999999999999999999999999999887      5567


Q ss_pred             EeecCCCcEEEEEEccCCCCCccceEE-EEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccC
Q 038577          184 LLLGHRDSVVGCFFSVDKKTDKVNRIY-TIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQ  262 (860)
Q Consensus       184 ~~~~h~~~i~~~~~~~~~~~~~~~~l~-s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (860)
                      .+..|...+.+++|+|+++     .++ +++.|+.|++||+.++..                            ...+ .
T Consensus       206 ~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~i~~~d~~~~~~----------------------------~~~~-~  251 (433)
T 3bws_A          206 TVDLTGKWSKILLYDPIRD-----LVYCSNWISEDISVIDRKTKLE----------------------------IRKT-D  251 (433)
T ss_dssp             EEECSSSSEEEEEEETTTT-----EEEEEETTTTEEEEEETTTTEE----------------------------EEEC-C
T ss_pred             EEcCCCCCeeEEEEcCCCC-----EEEEEecCCCcEEEEECCCCcE----------------------------EEEe-c
Confidence            7778999999999999998     775 555899999999876421                            1111 1


Q ss_pred             CCCceEEEEecCCCCEEEEEE--------cCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEE
Q 038577          263 APSKVTACDYHRGLDMVVVGF--------SNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVW  334 (860)
Q Consensus       263 ~~~~v~~~~~~~~~~~l~~~~--------~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~  334 (860)
                      ....+.+++|+|+++.+++++        .+|.|++||+.+++....+. +...+..++|+|+++.+++++..++.+.+|
T Consensus       252 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~  330 (433)
T 3bws_A          252 KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVY  330 (433)
T ss_dssp             CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEE
T ss_pred             CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence            234589999999999999888        48899999999888776653 344788999999999998887888999999


Q ss_pred             EccCceEEEEecCcccCeEEEEEcCCCCEEEEEeC---------------CCcEEEEECCCCeeEEEeecCCCceEEEEE
Q 038577          335 EWRSESYILKQQGHYFDVNCLAYSPDSQLLATGAD---------------DNKVKVWTVSSGFCFVTFTEHTNAVTALHF  399 (860)
Q Consensus       335 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~  399 (860)
                      |+.+++....+. +...+.+++|+|+|+++++++.               ||.|++||+.+++.+..+.. ...+.+++|
T Consensus       331 d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~  408 (433)
T 3bws_A          331 DLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDV  408 (433)
T ss_dssp             ETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEE
T ss_pred             ECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEE
Confidence            999998887765 6677999999999999988876               57999999999999888875 567999999


Q ss_pred             eeCCCEEEEEeC-CCcEEEEEccc
Q 038577          400 MANNHSLLSASL-DGTVRAWDLFR  422 (860)
Q Consensus       400 ~~~~~~l~s~~~-dg~i~~wd~~~  422 (860)
                      +|++++|++++. |+.|++|++..
T Consensus       409 s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          409 SPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             CTTSCEEEEEETTTTEEEEEEETT
T ss_pred             cCCCCEEEEEECCCCeEEEEEecC
Confidence            999999988875 99999999853

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.98  E-value=5.5e-31  Score=281.41  Aligned_cols=284  Identities=14%  Similarity=0.203  Sum_probs=238.4

Q ss_pred             ceEEEEecCCCCEEE-EEEcCCeEEEEECCCce----eEEEEeecCceeEEEEEee-CCCEEEEEEccCCcEEEEEccCc
Q 038577          266 KVTACDYHRGLDMVV-VGFSNGVFGLYQMPDFV----CIHLLSISREKITTAVFNE-LGNWLVFGCAKLGQLLVWEWRSE  339 (860)
Q Consensus       266 ~v~~~~~~~~~~~l~-~~~~~g~i~~~~~~~~~----~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~g~i~v~d~~~~  339 (860)
                      ....++++|+...++ +++.+|.|++|++....    ....+..|...|.+++|+| +++.+++++.+ |.|++||+.++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~d-g~v~vw~~~~~  114 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSED-CTVMVWEIPDG  114 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETT-SEEEEEECCTT
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCC-CeEEEEEccCC
Confidence            344578888776554 47889999999986542    3345677899999999999 88888888765 99999999987


Q ss_pred             -------eEEEEecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEe--ecCCCceEEEEEeeCCCEEEEE
Q 038577          340 -------SYILKQQGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSSGFCFVTF--TEHTNAVTALHFMANNHSLLSA  409 (860)
Q Consensus       340 -------~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~s~  409 (860)
                             ..+..+.+|...|.+++|+|++ .+|++++.||.|++||+.+++.+..+  ..|...|.+++|+|++++|+++
T Consensus       115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  194 (402)
T 2aq5_A          115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS  194 (402)
T ss_dssp             CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEE
T ss_pred             CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEE
Confidence                   5677788999999999999998 69999999999999999999999999  7899999999999999999999


Q ss_pred             eCCCcEEEEEccccceeeEe-eCCCCCcEEEEEECCCCCEEEEE---ecCCCeEEEEECCCCce-EEEe-cCcccCeEEE
Q 038577          410 SLDGTVRAWDLFRYRNFRTF-TTPSSRQFVSLASDQSGEVICAG---TLDSFEIFVWSMKTGRL-LDIL-SGHEGPVHGL  483 (860)
Q Consensus       410 ~~dg~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~i~v~d~~~~~~-~~~~-~~h~~~v~~l  483 (860)
                      +.||.|++||+++++....+ ..+....+.++.++|++.+++++   +.++ .|++||+++++. +... ..|...+.++
T Consensus       195 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~v~~~  273 (402)
T 2aq5_A          195 CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSER-QVALWDTKHLEEPLSLQELDTSSGVLLP  273 (402)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCE-EEEEEETTBCSSCSEEEECCCCSSCEEE
T ss_pred             ecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCc-eEEEEcCccccCCceEEeccCCCceeEE
Confidence            99999999999999988888 44444458899999999999998   5666 999999998764 3332 2577889999


Q ss_pred             EEcCCCCEEEE-EeCCCcEEEEEccCCcc-eeEEc--ccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCce
Q 038577          484 VFSPTNATLAS-SSWDKTVRLWNVFEGKG-SVESF--PHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGEL  553 (860)
Q Consensus       484 ~~s~~~~~l~s-~~~dg~i~iwd~~~~~~-~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  553 (860)
                      +|+|++++|++ ++.||.|++||+.+++. ...+.  .+...+.+++|+|++.++++  .++.+++|++.+++.
T Consensus       274 ~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          274 FFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             EEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred             EEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence            99999999875 45799999999998874 33333  35689999999999998775  467999999987653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.98  E-value=2.4e-29  Score=246.52  Aligned_cols=304  Identities=13%  Similarity=0.099  Sum_probs=217.4

Q ss_pred             EEEEeeccCCC----eEEEEEcCCCC---eEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCc
Q 038577          133 LIRTLADCNDK----VTALNWSPDSN---YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDK  205 (860)
Q Consensus       133 ~~~~~~~h~~~----v~~l~~s~d~~---~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~  205 (860)
                      ++..++...+.    +.++.|-..|-   .++++++ ..|++|+.......   +..+++.+|..+|..+.+.||..   
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~---   99 (356)
T 2w18_A           27 LVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQW---EKLYTWHFAEVPVLQIVPVPDVY---   99 (356)
T ss_dssp             EEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBE---EEEEEEECCSSCEEEECCCTTCC---
T ss_pred             eeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccc---eeeEEEeccCceeEEEEEcCccc---
Confidence            44555544332    45666655442   5666665 59999999876222   57899999999999999999887   


Q ss_pred             cceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCC----CCEEEE
Q 038577          206 VNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRG----LDMVVV  281 (860)
Q Consensus       206 ~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~  281 (860)
                        -|+...-.      +                                       -+...|.+++++|+    ++.++.
T Consensus       100 --~~~~~~~~------~---------------------------------------~~~~~v~sla~spd~~~~~~~l~s  132 (356)
T 2w18_A          100 --NLVCVALG------N---------------------------------------LEIREIRALFCSSDDESEKQVLLK  132 (356)
T ss_dssp             --SCEEEEEC------S---------------------------------------SSEEEEEEECC------CCEEEEE
T ss_pred             --ceeeeeec------c---------------------------------------ccccceEEEEECCCccccccEEEe
Confidence              33333200      0                                       12346899999999    999998


Q ss_pred             EEcCCeEEEEECCCceeEEE-EeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEc-cCceEEEEecCcccCeEEEEEcC
Q 038577          282 GFSNGVFGLYQMPDFVCIHL-LSISREKITTAVFNELGNWLVFGCAKLGQLLVWEW-RSESYILKQQGHYFDVNCLAYSP  359 (860)
Q Consensus       282 ~~~~g~i~~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~-~~~~~~~~~~~~~~~v~~~~~s~  359 (860)
                      ++.+  +.+|++++++.+.. ..++                      ++.|++|++ .+++.+..+..|...++.++|++
T Consensus       133 ~g~~--~~v~~l~~g~lv~ss~~g~----------------------d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~  188 (356)
T 2w18_A          133 SGNI--KAVLGLTKRRLVSSSGTLS----------------------DQQVEVMTFAEDGGGKENQFLMPPEETILTFAE  188 (356)
T ss_dssp             EEEE--EEEEEETTTEEEEEESSST----------------------TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEE
T ss_pred             CCCe--EEEEecCCCcEEEecccCC----------------------CCcEEEEEECCCCceeeeeccCCCceeeEEeec
Confidence            7754  67787755544433 1223                      367777777 33666666678888999999999


Q ss_pred             ---CCCEEEEEeCCCcEEEEECCCCeeEEEeecCCC---ceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCC
Q 038577          360 ---DSQLLATGADDNKVKVWTVSSGFCFVTFTEHTN---AVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPS  433 (860)
Q Consensus       360 ---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~  433 (860)
                         ++..|++++.|++|++||+.+++++.++.+|..   .+.+++|+|++.++++++.+..  +|+              
T Consensus       189 ~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~--~w~--------------  252 (356)
T 2w18_A          189 VQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA--KES--------------  252 (356)
T ss_dssp             EETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-----------------------
T ss_pred             cCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC--cce--------------
Confidence               789999999999999999999999999987543   6778899999998888776433  243              


Q ss_pred             CCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEe-----cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 038577          434 SRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDIL-----SGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFE  508 (860)
Q Consensus       434 ~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~-----~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~  508 (860)
                                     +++|+.|+ +|++||..+++.+..+     .+|...+.+..++  +.++|+++.|++|+|||+.+
T Consensus       253 ---------------laSGs~D~-tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~t  314 (356)
T 2w18_A          253 ---------------ESLRSPVF-QLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLL  314 (356)
T ss_dssp             --------------------CCE-EEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTT
T ss_pred             ---------------eeccCCCc-EEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCC
Confidence                           34566666 8999999988887665     4676665555554  88999999999999999999


Q ss_pred             CcceeEEcccCCCeE-EEEEeeCCCEEEEEeCCCeEEEEeC
Q 038577          509 GKGSVESFPHTHDVL-TVVYRPDGRQLACSTLDGQIHFWDP  548 (860)
Q Consensus       509 ~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~iwd~  548 (860)
                      ++....+.+|...+. .++|||||++|++|+.|++|+|||+
T Consensus       315 Gk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          315 GQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            998888878877655 5899999999999999999999985

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.1e-29  Score=275.44  Aligned_cols=281  Identities=12%  Similarity=0.062  Sum_probs=233.1

Q ss_pred             CceEEEEecCCCCEEEEEEcCCeEEEEECCCce---eEEEEeecC-----------------------------------
Q 038577          265 SKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFV---CIHLLSISR-----------------------------------  306 (860)
Q Consensus       265 ~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~---~~~~~~~~~-----------------------------------  306 (860)
                      .++.+++|+|+|+++++ +.++.|++||+.+++   .+..+..+.                                   
T Consensus         5 ~p~~~v~~s~dg~~l~~-~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFA-IIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEE-EETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEE-EeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            36889999999995554 468899999998888   555554322                                   


Q ss_pred             -------------------ceeEEEEEeeCCCEEEEEEccCCcEEEEEcc--CceEEEEec--CcccCeEEEEEcCCCCE
Q 038577          307 -------------------EKITTAVFNELGNWLVFGCAKLGQLLVWEWR--SESYILKQQ--GHYFDVNCLAYSPDSQL  363 (860)
Q Consensus       307 -------------------~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~--~~~~~~~~~--~~~~~v~~~~~s~~~~~  363 (860)
                                         ..|.+++|+|+++.|++++..+|.|++||+.  ++..+..+.  .|...|.+++|+|++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  163 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT  163 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence                               2699999999999986666666999999999  777777765  56788999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCeeEE----EeecCCCceEEEEEeeC---CCEEEEEeCCCcEEEEEccccceeeEeeCCCCCc
Q 038577          364 LATGADDNKVKVWTVSSGFCFV----TFTEHTNAVTALHFMAN---NHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQ  436 (860)
Q Consensus       364 l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~i~~~~~---~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~  436 (860)
                      |++|+.+|.|++|++.++....    .+.+|...|.+++|+|+   +++|++++.|+.|++||+.+++....+...+...
T Consensus       164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~  243 (450)
T 2vdu_B          164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF  243 (450)
T ss_dssp             EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred             EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence            9999999999999998776543    77789999999999999   9999999999999999999998888877677789


Q ss_pred             EEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCc-------------------------ccCeEEEEEcCCCCE
Q 038577          437 FVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGH-------------------------EGPVHGLVFSPTNAT  491 (860)
Q Consensus       437 ~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h-------------------------~~~v~~l~~s~~~~~  491 (860)
                      +.+++|+ +++++++++.|+ .|++||+.+++.+..+..+                         ...|.+++|+|++++
T Consensus       244 v~~~~~s-d~~~l~s~~~d~-~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~  321 (450)
T 2vdu_B          244 VSSICCG-KDYLLLSAGGDD-KIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF  321 (450)
T ss_dssp             EEEEEEC-STTEEEEEESSS-EEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE
T ss_pred             eEEEEEC-CCCEEEEEeCCC-eEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE
Confidence            9999999 999999999998 9999999999988887632                         357899999999999


Q ss_pred             EEEEe-CCCcEEEEEc--cCC---cceeEEcccCCCeEEEEEeeCCCEEEEEeC------CCeEEEEeCC
Q 038577          492 LASSS-WDKTVRLWNV--FEG---KGSVESFPHTHDVLTVVYRPDGRQLACSTL------DGQIHFWDPL  549 (860)
Q Consensus       492 l~s~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iwd~~  549 (860)
                      +++++ .|+.|++|++  ..+   .....+..+ ..+.+++|+|++.++++++.      +..|.+|.+.
T Consensus       322 l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          322 VAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             EEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             EEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence            99999 8999999999  554   333344455 88999999996544443332      4457888654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.98  E-value=8.4e-29  Score=263.92  Aligned_cols=277  Identities=12%  Similarity=0.132  Sum_probs=234.8

Q ss_pred             CEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeeEEEeecCCCceEEE
Q 038577          319 NWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLL-ATGADDNKVKVWTVSSGFCFVTFTEHTNAVTAL  397 (860)
Q Consensus       319 ~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i  397 (860)
                      +++++++..++.|++||+.+++.+..+..|. .+.+++|+|+++.+ ++++.|+.|++||+.+++.+..+..+. .+.++
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~   79 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV   79 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred             CEEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence            3566666777999999999999988887765 48999999999977 667789999999999999998887555 89999


Q ss_pred             EEeeCCCEEEEE-eCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEE-EecCCCeEEEEECCCCceEEEecC
Q 038577          398 HFMANNHSLLSA-SLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICA-GTLDSFEIFVWSMKTGRLLDILSG  475 (860)
Q Consensus       398 ~~~~~~~~l~s~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~i~v~d~~~~~~~~~~~~  475 (860)
                      +|+|++++++.+ +.++.|++||+.+++....+...  ..+.+++++|+++.+++ +..++ .|++||+.+++.+..+..
T Consensus        80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~-~v~~~d~~~~~~~~~~~~  156 (391)
T 1l0q_A           80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG--KSPLGLALSPDGKKLYVTNNGDK-TVSVINTVTKAVINTVSV  156 (391)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEETTTT-EEEEEETTTTEEEEEEEC
T ss_pred             EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC--CCcceEEECCCCCEEEEEeCCCC-EEEEEECCCCcEEEEEec
Confidence            999999987655 46799999999999888777654  36799999999998854 44455 999999999999988876


Q ss_pred             cccCeEEEEEcCCCCEE-EEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEe---CCCeEEEEeCCCC
Q 038577          476 HEGPVHGLVFSPTNATL-ASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACST---LDGQIHFWDPLNG  551 (860)
Q Consensus       476 h~~~v~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~  551 (860)
                      | ..+.+++|+|+++++ ++++.|+.|++||+.+++.. ....+...+.+++|+|++++|++++   .++.|++||+.++
T Consensus       157 ~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~  234 (391)
T 1l0q_A          157 G-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI-DTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (391)
T ss_dssp             C-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-EEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             C-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEE-EEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence            5 456999999999987 57778899999999988643 4445667899999999999999988   6899999999999


Q ss_pred             ceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEE-EEecCCCeEEEEECCCceEEEEEeecc
Q 038577          552 ELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYI-LAGGSSKYICMYDVADQVLLRRFQITH  623 (860)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l-~~~~~dg~v~vwd~~~~~~~~~~~~~~  623 (860)
                      +.+..+..+..                     +.+++|+|+|++| ++++.|+.|++||+.+++.++.+....
T Consensus       235 ~~~~~~~~~~~---------------------~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~  286 (391)
T 1l0q_A          235 KITARIPVGPD---------------------PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGK  286 (391)
T ss_dssp             EEEEEEECCSS---------------------EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred             eEEEEEecCCC---------------------ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCc
Confidence            99888877653                     7899999999988 567889999999999999998887553

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=2.6e-29  Score=275.38  Aligned_cols=344  Identities=13%  Similarity=0.075  Sum_probs=273.2

Q ss_pred             EecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEc--cCceEEEEecCc
Q 038577          271 DYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEW--RSESYILKQQGH  348 (860)
Q Consensus       271 ~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~--~~~~~~~~~~~~  348 (860)
                      .++|++..++++..++.|.+||..+++.+..+..+.. +..++|+|||+++++++.+ +.|.+||+  .+++.+..+.. 
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d-~~V~v~D~~~~t~~~~~~i~~-  220 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRD-ARIDMIDLWAKEPTKVAEIKI-  220 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETT-SEEEEEETTSSSCEEEEEEEC-
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCC-CeEEEEECcCCCCcEEEEEec-
Confidence            3789998999999999999999999999998885544 8899999999999999887 99999999  88888887764 


Q ss_pred             ccCeEEEEEcC----CCCEEEEEeC-CCcEEEEECCCCeeEEEeecC-----------CCceEEEEEeeCCCE-EEEEeC
Q 038577          349 YFDVNCLAYSP----DSQLLATGAD-DNKVKVWTVSSGFCFVTFTEH-----------TNAVTALHFMANNHS-LLSASL  411 (860)
Q Consensus       349 ~~~v~~~~~s~----~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~i~~~~~~~~-l~s~~~  411 (860)
                      ...+..++|+|    +|+++++++. +++|.+||..+++++..+..+           ...+.++.++|++.. +++...
T Consensus       221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~  300 (543)
T 1nir_A          221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE  300 (543)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence            45579999999    9999999885 899999999999998887642           237899999997754 566778


Q ss_pred             CCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC----cccCeEEEEEcC
Q 038577          412 DGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG----HEGPVHGLVFSP  487 (860)
Q Consensus       412 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~----h~~~v~~l~~s~  487 (860)
                      ++.|.+||+.+.+.......+....+..++|+|+|+++++++...+.|.+||..+++++..+..    |.+....+ ++|
T Consensus       301 ~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p  379 (543)
T 1nir_A          301 TGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHP  379 (543)
T ss_dssp             TTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EET
T ss_pred             CCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCC
Confidence            8999999998876554222223445678999999998887766444999999999999988874    65544444 577


Q ss_pred             C-CCEEEEEe-CCCcEEEEEccC-------CcceeEEcccCCCeEEEEEeeCCCEEEEEe-------CCCeEEEEeCCCC
Q 038577          488 T-NATLASSS-WDKTVRLWNVFE-------GKGSVESFPHTHDVLTVVYRPDGRQLACST-------LDGQIHFWDPLNG  551 (860)
Q Consensus       488 ~-~~~l~s~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------~dg~i~iwd~~~~  551 (860)
                      + +..++++. .|++|.+||+.+       .+.+..+..|...+..++++|+|++|++++       .+++|.+||+.++
T Consensus       380 ~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~  459 (543)
T 1nir_A          380 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL  459 (543)
T ss_dssp             TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred             CCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence            7 66677765 589999999988       676777778888889999999999999987       2679999999999


Q ss_pred             cee-EEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEe-----cCCCeEEEEECCCceEEEEEeecccc
Q 038577          552 ELM-YTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAG-----GSSKYICMYDVADQVLLRRFQITHNL  625 (860)
Q Consensus       552 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~-----~~dg~v~vwd~~~~~~~~~~~~~~~~  625 (860)
                      +.. ..+....            ......+++.+..+.|+|||++|+++     +.++.|.|||..++++++.++..+-.
T Consensus       460 ~~~~~~~~v~~------------~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~~~~  527 (543)
T 1nir_A          460 DAKYQVLPIAE------------WADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPRLI  527 (543)
T ss_dssp             TSCCEEECHHH------------HHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTTCC
T ss_pred             CCCeEEeechh------------hcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCCCcc
Confidence            876 4432211            00011224569999999999998866     24799999999999999988765544


Q ss_pred             cccce
Q 038577          626 SLDGV  630 (860)
Q Consensus       626 ~~~~~  630 (860)
                      .+.|.
T Consensus       528 ~p~g~  532 (543)
T 1nir_A          528 TPTGK  532 (543)
T ss_dssp             SEEEE
T ss_pred             CCCee
Confidence            44443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=1.3e-29  Score=264.58  Aligned_cols=305  Identities=12%  Similarity=0.134  Sum_probs=207.5

Q ss_pred             EEEcccCeEEEEee-cCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeE
Q 038577           78 FINLHCHVVLHRVR-FKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYL  156 (860)
Q Consensus        78 vwd~~~~~~~~~~~-~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l  156 (860)
                      ||++.+.+.+.... |...|.+++|+|||++||++.+..+++|+..+++.       ...  .+...+..+++.++++.+
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~~   73 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAH-------IMS--QEMRHLSKVRMLHRTNYV   73 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEE-------EEE--EECSCCCEEEECTTSSEE
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcce-------eee--eecCCeEEEEEcCCCCEE
Confidence            56677777776555 89999999999999999999888899999886542       222  223358889999998887


Q ss_pred             -EEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccC
Q 038577          157 -LVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETME  235 (860)
Q Consensus       157 -~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~  235 (860)
                       ++++.|+.|++||..++      .....+. |...|.++.|+++       .++++ .|+.+++||+.+....      
T Consensus        74 ~~~~~~d~~v~iWd~~~~------~~~~~~~-~~~~v~~v~~~~~-------~~~~~-~~~~i~i~d~~~~~~~------  132 (355)
T 3vu4_A           74 AFVTGVKEVVHIWDDVKK------QDVSRIK-VDAPVKDLFLSRE-------FIVVS-YGDVISVFKFGNPWKR------  132 (355)
T ss_dssp             EEECSSTTEEEEEETTTT------EEEEEEE-CSSCEEEEEECSS-------EEEEE-ETTEEEEEESSTTCCB------
T ss_pred             EEEECCccEEEEEECCCC------cEEEEEE-CCCceEEEEEcCC-------EEEEE-EcCEEEEEECCCCcee------
Confidence             46778899999999887      4455554 6778999999876       34433 3788999998864110      


Q ss_pred             CCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEE--EEcCCeEEEEECCCceeEEEEeecCceeEEEE
Q 038577          236 DSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVV--GFSNGVFGLYQMPDFVCIHLLSISREKITTAV  313 (860)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~  313 (860)
                                           ...+..   ....+++++  ..+++  |+.+|.|++||+.++..........       
T Consensus       133 ---------------------~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~-------  179 (355)
T 3vu4_A          133 ---------------------ITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGV-------  179 (355)
T ss_dssp             ---------------------SSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------
T ss_pred             ---------------------eEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccc-------
Confidence                                 000000   223344455  45554  4666777777775544321110000       


Q ss_pred             EeeCCCEEEEEEccCCcEEEEEccCceE-EEEecCcccCeEEEEEcCCCCEEEEEeCCCc-EEEEECCCCeeEEEee-c-
Q 038577          314 FNELGNWLVFGCAKLGQLLVWEWRSESY-ILKQQGHYFDVNCLAYSPDSQLLATGADDNK-VKVWTVSSGFCFVTFT-E-  389 (860)
Q Consensus       314 ~s~~~~~l~~~~~~~g~i~v~d~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~-~-  389 (860)
                                           +...... +..+.+|...|.+++|+|+|++|++|+.||+ |++||+.+++.+..+. + 
T Consensus       180 ---------------------~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~  238 (355)
T 3vu4_A          180 ---------------------QQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGL  238 (355)
T ss_dssp             ----------------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTT
T ss_pred             ---------------------cccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC
Confidence                                 0000012 4566899999999999999999999999998 9999999999999998 5 


Q ss_pred             CCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeE----------------------eeCCCCCcEEEEEECCCCC
Q 038577          390 HTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRT----------------------FTTPSSRQFVSLASDQSGE  447 (860)
Q Consensus       390 ~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~  447 (860)
                      |...|.+++|+|++++|++++.|+.|++||+......+.                      +..........++|+++++
T Consensus       239 h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~  318 (355)
T 3vu4_A          239 DRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESS  318 (355)
T ss_dssp             CCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSE
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCC
Confidence            999999999999999999999999999999976532111                      1111112236689999999


Q ss_pred             EEEEEecCCCeEEEEECCCC
Q 038577          448 VICAGTLDSFEIFVWSMKTG  467 (860)
Q Consensus       448 ~l~~~~~~~~~i~v~d~~~~  467 (860)
                      .+++++.|+ .+++|++..+
T Consensus       319 ~l~~~~~dg-~~~~~~~~~~  337 (355)
T 3vu4_A          319 LVVVWPHTR-MIETFKVVFD  337 (355)
T ss_dssp             EEEEETTTT-EEEEEEEEEE
T ss_pred             EEEEEeCCC-eEEEEEEEcC
Confidence            999999998 9999997643

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=1.6e-29  Score=271.99  Aligned_cols=312  Identities=13%  Similarity=0.213  Sum_probs=246.4

Q ss_pred             EEEeecCCceeEEEECCCC----------CEEEEE-----eCCeEEEEeCC--C--------------CCc----cccee
Q 038577           87 LHRVRFKYPVNAILFSPNG----------KYIAVG-----TGKLVQIWRSP--G--------------FKK----EVFAF  131 (860)
Q Consensus        87 ~~~~~~~~~v~~~~fspdg----------~~la~~-----~~~~i~iwd~~--~--------------~~~----~~~~~  131 (860)
                      +......-|..++.|.|+.          .++++|     ..+.|.++++.  .              ++.    ...+.
T Consensus        39 ~~~~~l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~  118 (430)
T 2xyi_A           39 VMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGK  118 (430)
T ss_dssp             EEEEECSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------C
T ss_pred             HhhcCCCCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCc
Confidence            3444456788999999976          467777     23577777643  0              000    00111


Q ss_pred             EEEEEeeccCCCeEEEEEcCC-CCeEEEeecCCeEEEEeecccccCc----ccccceEeecCCCcEEEEEEccCCCCCcc
Q 038577          132 ELIRTLADCNDKVTALNWSPD-SNYLLVGSKDLAVRLFYVKEKLKGI----HTNKPFLLLGHRDSVVGCFFSVDKKTDKV  206 (860)
Q Consensus       132 ~~~~~~~~h~~~v~~l~~s~d-~~~l~s~~~dg~v~vwd~~~~~~~~----~~~~~~~~~~h~~~i~~~~~~~~~~~~~~  206 (860)
                      ........|.+.|++++|+|+ +.+|++++.||.|++|++.......    .......+.+|...|.+++|+|++..   
T Consensus       119 ~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~---  195 (430)
T 2xyi_A          119 IEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG---  195 (430)
T ss_dssp             EEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT---
T ss_pred             eEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC---
Confidence            123556789999999999997 6899999999999999998621000    01567788999999999999998764   


Q ss_pred             ceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecC-CCCEEEEEEcC
Q 038577          207 NRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHR-GLDMVVVGFSN  285 (860)
Q Consensus       207 ~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~  285 (860)
                       +|++++.||.|++|++.....                     ..+.+.....+..|...|.+++|+| ++..+++++.+
T Consensus       196 -~l~s~~~dg~i~vwd~~~~~~---------------------~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d  253 (430)
T 2xyi_A          196 -YLLSASDDHTICLWDINATPK---------------------EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD  253 (430)
T ss_dssp             -EEEEECTTSCEEEEETTSCCB---------------------GGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT
T ss_pred             -eEEEEeCCCeEEEEeCCCCCC---------------------CCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC
Confidence             899999999999999987421                     0111122344557888999999999 67889999999


Q ss_pred             CeEEEEECCCc---eeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccC-ceEEEEecCcccCeEEEEEcCCC
Q 038577          286 GVFGLYQMPDF---VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRS-ESYILKQQGHYFDVNCLAYSPDS  361 (860)
Q Consensus       286 g~i~~~~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~-~~~~~~~~~~~~~v~~~~~s~~~  361 (860)
                      |.|++||+.+.   .....+..+...+.+++|+|++..++++++.+|.|++||+++ +..+..+..|...|.+++|+|++
T Consensus       254 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~  333 (430)
T 2xyi_A          254 QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN  333 (430)
T ss_dssp             SEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSC
T ss_pred             CeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCC
Confidence            99999999877   567778889999999999999987665555669999999997 56677778899999999999998


Q ss_pred             C-EEEEEeCCCcEEEEECCC--------------CeeEEEeecCCCceEEEEEeeCCC-EEEEEeCCCcEEEEEcccc
Q 038577          362 Q-LLATGADDNKVKVWTVSS--------------GFCFVTFTEHTNAVTALHFMANNH-SLLSASLDGTVRAWDLFRY  423 (860)
Q Consensus       362 ~-~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~i~~wd~~~~  423 (860)
                      + ++++++.||.|++||+..              ...+..+.+|...|.+++|+|++. .+++++.||.|++|++...
T Consensus       334 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          334 ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             TTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            5 799999999999999986              367778888999999999999998 8999999999999998754

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=6.9e-31  Score=278.47  Aligned_cols=348  Identities=12%  Similarity=0.059  Sum_probs=214.2

Q ss_pred             CeeEEEE---cCCCCEEEEEcCCCcEEEEEcccC----------eEEEEeecCCceeEEEECCCCCEEEEEeCCeEEEEe
Q 038577           54 NICRIAV---SPDGTFLLTVDENQRCHFINLHCH----------VVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWR  120 (860)
Q Consensus        54 ~v~~va~---spdg~~la~~~~d~~i~vwd~~~~----------~~~~~~~~~~~v~~~~fspdg~~la~~~~~~i~iwd  120 (860)
                      ...+++|   +|++..++.++.++.|.+|+....          ..+..+.+..++..+.|++..               
T Consensus        17 ~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------   81 (393)
T 4gq1_A           17 RPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSC---------------   81 (393)
T ss_dssp             CEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTC---------------
T ss_pred             CCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCc---------------
Confidence            3455566   355544555556888999976421          112222244444455544322               


Q ss_pred             CCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEcc-
Q 038577          121 SPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSV-  199 (860)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-  199 (860)
                                   ......|...+....+++++.+|++++.|++|++||...+ +.........+.+|.+.|.+++|+| 
T Consensus        82 -------------~~~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~-~~~~~~~~~~~~gH~~~v~~v~~~p~  147 (393)
T 4gq1_A           82 -------------SYSENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNE-TIITQHVLGGKSGHHNFVNDIDIADV  147 (393)
T ss_dssp             -------------EEECC----------CCEEEEEEEEEETTSCEEEEEEETT-EEEEEEEECTTTSCSSCEEEEEEEEE
T ss_pred             -------------cccccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCC-ccceeeeecccCCCCCceEEEEEccc
Confidence                         1222345555566677888899999999999999999887 2211122345789999999999998 


Q ss_pred             -------CCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEe
Q 038577          200 -------DKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDY  272 (860)
Q Consensus       200 -------~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  272 (860)
                             |++     +|++++.|++|++||+.++..                            ...+..+...+.+++|
T Consensus       148 ~~~~~~~d~~-----~las~s~D~tv~~Wd~~~~~~----------------------------~~~~~~~~~~v~~v~~  194 (393)
T 4gq1_A          148 YSADNRLAEQ-----VIASVGDDCTLIIWRLTDEGP----------------------------ILAGYPLSSPGISVQF  194 (393)
T ss_dssp             ECTTCSEEEE-----EEEEEETTSEEEEEEEETTEE----------------------------EEEEEECSSCEEEEEE
T ss_pred             cccccCCCCC-----EEEEEECCCeEEEEECCCCce----------------------------eeeecCCCCCcEEEEE
Confidence                   777     999999999999999976421                            2233456788999999


Q ss_pred             cCCCC-EEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccC
Q 038577          273 HRGLD-MVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFD  351 (860)
Q Consensus       273 ~~~~~-~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~  351 (860)
                      +|++. +|++++.||.|++||+.+++.......+........++++.                  ..........+|...
T Consensus       195 ~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~------------------~~~~~~~~~~~~~~~  256 (393)
T 4gq1_A          195 RPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNT------------------LPLVNTCHSSGIASS  256 (393)
T ss_dssp             ETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEES------------------GGGC------CCSSS
T ss_pred             CCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccc------------------ccceeeeeccccccc
Confidence            99875 79999999999999998887665544333222211111111                  111111223578888


Q ss_pred             eEEEEEc-CCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEee
Q 038577          352 VNCLAYS-PDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFT  430 (860)
Q Consensus       352 v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~  430 (860)
                      +.++.|+ |+++.+++++.|+.+++||+..+.....+..|...+..+.+.|+.+.+.....                   
T Consensus       257 v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------------  317 (393)
T 4gq1_A          257 LANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPS-------------------  317 (393)
T ss_dssp             CSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCC-------------------
T ss_pred             ceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCc-------------------
Confidence            9999986 79999999999999999999999888888888888888888777543321111                   


Q ss_pred             CCCCCcEEEEEECC-CCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 038577          431 TPSSRQFVSLASDQ-SGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVF  507 (860)
Q Consensus       431 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~  507 (860)
                           .+....+.+ ++.++++|+.|+ .|++||+.+++....+.+|..+|.+++|+|||++||+++.+| +.+|.+.
T Consensus       318 -----~~~~~~~~~~~~~~~~sgs~Dg-~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          318 -----LLGACPHPRYMDYFATAHSQHG-LIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             -----SSCCEECSSCTTEEEEEETTTT-EEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             -----ceeEEEccCCCCEEEEEECCCC-EEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence                 111122223 344556666677 999999999999888888999999999999999999999776 6666654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=1.3e-29  Score=272.55  Aligned_cols=251  Identities=22%  Similarity=0.316  Sum_probs=214.1

Q ss_pred             EEecCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC----------CeeEEEeecCCCceEEEEEeeCCC-EEEEEe
Q 038577          343 LKQQGHYFDVNCLAYSPD-SQLLATGADDNKVKVWTVSS----------GFCFVTFTEHTNAVTALHFMANNH-SLLSAS  410 (860)
Q Consensus       343 ~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~  410 (860)
                      .....|.+.|++++|+|+ +.++++++.+|.|++|++.+          ...+..+.+|...|.+++|+|++. +|++++
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            344678999999999997 67999999999999999986          577788889999999999999988 999999


Q ss_pred             CCCcEEEEEcccccee------eEeeCCCCCcEEEEEECC-CCCEEEEEecCCCeEEEEECCCC---ceEEEecCcccCe
Q 038577          411 LDGTVRAWDLFRYRNF------RTFTTPSSRQFVSLASDQ-SGEVICAGTLDSFEIFVWSMKTG---RLLDILSGHEGPV  480 (860)
Q Consensus       411 ~dg~i~~wd~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~v~d~~~~---~~~~~~~~h~~~v  480 (860)
                      .||.|++|++.++...      ......+...+.+++|+| ++.++++++.++ .|++||++++   +.+..+..|...|
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~v  280 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ-KLMIWDTRNNNTSKPSHTVDAHTAEV  280 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTS-EEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCC-eEEEEECCCCCCCcceeEeecCCCCe
Confidence            9999999999873321      122235666899999999 678888888888 9999999987   5778888999999


Q ss_pred             EEEEEcCCCC-EEEEEeCCCcEEEEEccCC-cceeEEcccCCCeEEEEEeeCCC-EEEEEeCCCeEEEEeCCCC------
Q 038577          481 HGLVFSPTNA-TLASSSWDKTVRLWNVFEG-KGSVESFPHTHDVLTVVYRPDGR-QLACSTLDGQIHFWDPLNG------  551 (860)
Q Consensus       481 ~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~------  551 (860)
                      ++++|+|+++ ++++++.||.|++||++.. .....+..|...|++++|+|+++ +|++++.||.|++||+...      
T Consensus       281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  360 (430)
T 2xyi_A          281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST  360 (430)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH
T ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc
Confidence            9999999987 6899999999999999884 44566668999999999999985 7999999999999999872      


Q ss_pred             --------ceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCC-EEEEecCCCeEEEEECCCce
Q 038577          552 --------ELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGS-YILAGGSSKYICMYDVADQV  614 (860)
Q Consensus       552 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~v~vwd~~~~~  614 (860)
                              +.+..+.+|.                    ..|++++|+|+++ +|++++.||.|++|++..+.
T Consensus       361 ~~~~~~~~~~~~~~~~h~--------------------~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~  412 (430)
T 2xyi_A          361 EDAEDGPPELLFIHGGHT--------------------AKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV  412 (430)
T ss_dssp             HHHHHCCTTEEEECCCCS--------------------SCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred             cccccCCcceEEEcCCCC--------------------CCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence                    3444444443                    4699999999999 89999999999999998753

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.1e-30  Score=298.39  Aligned_cols=251  Identities=21%  Similarity=0.277  Sum_probs=217.9

Q ss_pred             EEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc--CceEEEEecCcccCeEEEEEcCC--CCEEEEEeCCCcEEE
Q 038577          300 HLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR--SESYILKQQGHYFDVNCLAYSPD--SQLLATGADDNKVKV  375 (860)
Q Consensus       300 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~--~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i  375 (860)
                      ..+.+|.+.|.+++|+|+|+.+++++.+ |.|++||+.  ++.....+.+|...|.+++|+|+  ++++++|+.||.|++
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~d-g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSD-KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETT-TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECC-CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            4567889999999999999999988776 999999998  56777788899999999999988  999999999999999


Q ss_pred             EECCCCe--eEEEeecCCCceEEEEEeeC--CCEEEEEeCCCcEEEEEccccceee-EeeCCCCCcEEEEEECC------
Q 038577          376 WTVSSGF--CFVTFTEHTNAVTALHFMAN--NHSLLSASLDGTVRAWDLFRYRNFR-TFTTPSSRQFVSLASDQ------  444 (860)
Q Consensus       376 wd~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~------  444 (860)
                      ||+.++.  ....+..|...|.+++|+|+  ++.+++++.||.|++||+.+..... .....+...+.+++++|      
T Consensus        82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~  161 (753)
T 3jro_A           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  161 (753)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred             EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence            9999887  77788889999999999999  9999999999999999998874332 22345566899999999      


Q ss_pred             -------CCCEEEEEecCCCeEEEEECCCC----ceEEEecCcccCeEEEEEcCC---CCEEEEEeCCCcEEEEEccCCc
Q 038577          445 -------SGEVICAGTLDSFEIFVWSMKTG----RLLDILSGHEGPVHGLVFSPT---NATLASSSWDKTVRLWNVFEGK  510 (860)
Q Consensus       445 -------~~~~l~~~~~~~~~i~v~d~~~~----~~~~~~~~h~~~v~~l~~s~~---~~~l~s~~~dg~i~iwd~~~~~  510 (860)
                             ++.++++++.|+ .|++||++++    .....+.+|.++|++++|+|+   ++++++++.||.|++||+.++.
T Consensus       162 ~~~~~~~d~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~  240 (753)
T 3jro_A          162 GEHNGTKESRKFVTGGADN-LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  240 (753)
T ss_dssp             -----CGGGCCEEEEETTS-CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred             cccccCCCCCEEEEEECCC-eEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence                   589999999998 9999999877    556778899999999999999   8999999999999999998864


Q ss_pred             -----ceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCc
Q 038577          511 -----GSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGE  552 (860)
Q Consensus       511 -----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  552 (860)
                           .......|...|++++|+|+|+++++++.||.|++|++.++.
T Consensus       241 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          241 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             SCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             CcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence                 223334588899999999999999999999999999998543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=4.5e-29  Score=244.59  Aligned_cols=281  Identities=17%  Similarity=0.124  Sum_probs=206.1

Q ss_pred             eEEEEecCCC--CEEEEEEcCCeEEEEECCCc---eeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceE
Q 038577          267 VTACDYHRGL--DMVVVGFSNGVFGLYQMPDF---VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESY  341 (860)
Q Consensus       267 v~~~~~~~~~--~~l~~~~~~g~i~~~~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~  341 (860)
                      +.++-|-..+  +.-++......|++|+..++   +.++++..+..+|..+.+.||-..|++..-.              
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--------------  107 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG--------------  107 (356)
T ss_dssp             EEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC--------------
T ss_pred             EeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec--------------
Confidence            4445454433  23445555678999999998   8999999999999999999988777665432              


Q ss_pred             EEEecCcccCeEEEEEcCC----CCEEEEEeCCCcEEEEECCCCeeEEE-eecCCCceEEEEEeeCCCEEEEEeCCCcEE
Q 038577          342 ILKQQGHYFDVNCLAYSPD----SQLLATGADDNKVKVWTVSSGFCFVT-FTEHTNAVTALHFMANNHSLLSASLDGTVR  416 (860)
Q Consensus       342 ~~~~~~~~~~v~~~~~s~~----~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~  416 (860)
                          .-+...|++++++|+    ++.+++++.  .+++|++.+++.+.. ..+|...|..++++|+|+.+.         
T Consensus       108 ----~~~~~~v~sla~spd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~---------  172 (356)
T 2w18_A          108 ----NLEIREIRALFCSSDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKE---------  172 (356)
T ss_dssp             ----SSSEEEEEEECC------CCEEEEEEEE--EEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEE---------
T ss_pred             ----cccccceEEEEECCCccccccEEEeCCC--eEEEEecCCCcEEEecccCCCCcEEEEEECCCCceee---------
Confidence                245667999999999    999999875  478887766555554 344555555555555554443         


Q ss_pred             EEEccccceeeEeeCCCCCcEEEEEECC---CCCEEEEEecCCCeEEEEECCCCceEEEecCcc---cCeEEEEEcCCCC
Q 038577          417 AWDLFRYRNFRTFTTPSSRQFVSLASDQ---SGEVICAGTLDSFEIFVWSMKTGRLLDILSGHE---GPVHGLVFSPTNA  490 (860)
Q Consensus       417 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~---~~v~~l~~s~~~~  490 (860)
                                 .+.. +...+..++|++   ++..|++++.|+ +|++||+++|+.++++.+|.   ..+.+++|+|+|.
T Consensus       173 -----------s~~~-~~~~v~~l~fs~~~g~~~~LaSgS~D~-TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~  239 (356)
T 2w18_A          173 -----------NQFL-MPPEETILTFAEVQGMQEALLGTTIMN-NIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGL  239 (356)
T ss_dssp             -----------EEEE-CCCSSCEEEEEEEETSTTEEEEEETTS-EEEEEETTTCCEEEEEECCC---CCCEEEEEEETTE
T ss_pred             -----------eecc-CCCceeeEEeeccCCCCceEEEecCCC-cEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCC
Confidence                       2221 222455667777   789999999999 99999999999999998754   3677889999998


Q ss_pred             EE------------EEEeCCCcEEEEEccCCcceeEE-----cccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCce
Q 038577          491 TL------------ASSSWDKTVRLWNVFEGKGSVES-----FPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGEL  553 (860)
Q Consensus       491 ~l------------~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  553 (860)
                      ++            ++|+.|++|++||..+++.+...     .+|...+.+..+  ++.++++++.|++|+|||+.++++
T Consensus       240 ~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~  317 (356)
T 2w18_A          240 LFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQC  317 (356)
T ss_dssp             EEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSE
T ss_pred             EEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcE
Confidence            76            56888999999999988755433     245555444433  488999999999999999999999


Q ss_pred             eEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEEC
Q 038577          554 MYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV  610 (860)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~  610 (860)
                      +.++.+|.+.                   .+..++|||||++|++|+.|++|+|||+
T Consensus       318 l~tL~gH~~~-------------------vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          318 TALLPPVSDQ-------------------HWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEECCC--C-------------------CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEecCCCCC-------------------eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            9999988752                   2456899999999999999999999995

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.3e-31  Score=301.36  Aligned_cols=256  Identities=15%  Similarity=0.194  Sum_probs=216.3

Q ss_pred             EEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccC--CCCCccceEEE
Q 038577          134 IRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVD--KKTDKVNRIYT  211 (860)
Q Consensus       134 ~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~~~~~~l~s  211 (860)
                      ...+.+|.+.|++++|+|++++|++|+.||.|++||+... ..   .....+.+|.+.|.+++|+++  +.     +|++
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~-~~---~~~~~l~~h~~~V~~l~~s~~~~~~-----~l~s   72 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-TH---KLIDTLTGHEGPVWRVDWAHPKFGT-----ILAS   72 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT-EE---EEEEEECCCSSCEEEEEECCTTSCS-----EEEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC-CC---ccceeccCCcCceEEEEecCCCCCC-----EEEE
Confidence            3567899999999999999999999999999999999843 12   456788999999999999988  77     9999


Q ss_pred             EcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCC--CCEEEEEEcCCeEE
Q 038577          212 IARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRG--LDMVVVGFSNGVFG  289 (860)
Q Consensus       212 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~g~i~  289 (860)
                      ++.||.|++||+.++.                        +  .....+..|...|.+++|+|+  ++.+++|+.||.|+
T Consensus        73 ~s~Dg~I~vwd~~~~~------------------------~--~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~  126 (753)
T 3jro_A           73 CSYDGKVLIWKEENGR------------------------W--SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS  126 (753)
T ss_dssp             EETTSCEEEEEEETTE------------------------E--EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE
T ss_pred             EeCCCeEEEEECCCCc------------------------c--cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEE
Confidence            9999999999998742                        1  123344568889999999999  99999999999999


Q ss_pred             EEECCCc--eeEEEEeecCceeEEEEEee-------------CCCEEEEEEccCCcEEEEEccCc----eEEEEecCccc
Q 038577          290 LYQMPDF--VCIHLLSISREKITTAVFNE-------------LGNWLVFGCAKLGQLLVWEWRSE----SYILKQQGHYF  350 (860)
Q Consensus       290 ~~~~~~~--~~~~~~~~~~~~i~~~~~s~-------------~~~~l~~~~~~~g~i~v~d~~~~----~~~~~~~~~~~  350 (860)
                      +||+.++  .....+..+...+.+++|+|             ++..+++++.+ |.|++||+.++    .....+.+|..
T Consensus       127 vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~d-g~I~iwd~~~~~~~~~~~~~~~~h~~  205 (753)
T 3jro_A          127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD-NLVKIWKYNSDAQTYVLESTLEGHSD  205 (753)
T ss_dssp             EEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETT-SCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred             EEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECC-CeEEEEeccCCcccceeeeeecCCCC
Confidence            9999876  34456677888999999999             58888888776 99999999876    56667788999


Q ss_pred             CeEEEEEcCC---CCEEEEEeCCCcEEEEECCCCe-----eEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccc
Q 038577          351 DVNCLAYSPD---SQLLATGADDNKVKVWTVSSGF-----CFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFR  422 (860)
Q Consensus       351 ~v~~~~~s~~---~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~  422 (860)
                      .|.+++|+|+   +.++++++.||.|++||+.++.     .......|...|++++|+|+++++++++.||.|++|++..
T Consensus       206 ~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          206 WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             CEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             cEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            9999999999   8999999999999999998764     3333455889999999999999999999999999999986


Q ss_pred             cce
Q 038577          423 YRN  425 (860)
Q Consensus       423 ~~~  425 (860)
                      ...
T Consensus       286 ~~~  288 (753)
T 3jro_A          286 EGK  288 (753)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.6e-30  Score=266.25  Aligned_cols=267  Identities=10%  Similarity=0.072  Sum_probs=217.9

Q ss_pred             EeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC---------CCeeE
Q 038577          314 FNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVS---------SGFCF  384 (860)
Q Consensus       314 ~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~---------~~~~~  384 (860)
                      +.+++..+++++.+ |.|++||+.+++.+..+.  ...|.++.++|+   +++++.|++|++|+..         ++..+
T Consensus        44 ~~~d~~~l~sg~~D-g~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~  117 (343)
T 3lrv_A           44 MYYDKWVCMCRCED-GALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL  117 (343)
T ss_dssp             SSEEEEEEEEEEET-TEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred             hcCCCCEEEEECCC-CcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence            34566777777665 999999999998877765  456888889988   9999999999999765         45544


Q ss_pred             EEee-cCCCceEEEEEee--CCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEE
Q 038577          385 VTFT-EHTNAVTALHFMA--NNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFV  461 (860)
Q Consensus       385 ~~~~-~~~~~v~~i~~~~--~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v  461 (860)
                      ..+. .|..+|.+++|+|  +++++++++.||.|++||+.+++............+.+++++|++.++++|+.|+ .|++
T Consensus       118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg-~i~i  196 (343)
T 3lrv_A          118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDG-ILDV  196 (343)
T ss_dssp             EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTS-CEEE
T ss_pred             EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCC-EEEE
Confidence            4444 6778999999999  9999999999999999999999887766666666799999999999999999998 9999


Q ss_pred             EECCCCceE-EEecC-cccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcc---cCCCe--EEEEEeeCCCEE
Q 038577          462 WSMKTGRLL-DILSG-HEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFP---HTHDV--LTVVYRPDGRQL  534 (860)
Q Consensus       462 ~d~~~~~~~-~~~~~-h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v--~~~~~s~~~~~l  534 (860)
                      ||+++++.. ..+.+ |.++|++++|+|++.+|++++ |+.|++||+++.+....+..   |...+  .+++|+|+|++|
T Consensus       197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l  275 (343)
T 3lrv_A          197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNM  275 (343)
T ss_dssp             EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEE
T ss_pred             EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEE
Confidence            999999988 88888 999999999999999999999 55999999998875443332   33333  469999999999


Q ss_pred             EEEeC-CCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEec---CCCEEEEecCCCeEEEEEC
Q 038577          535 ACSTL-DGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSA---DGSYILAGGSSKYICMYDV  610 (860)
Q Consensus       535 ~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~---~g~~l~~~~~dg~v~vwd~  610 (860)
                      ++++. |+.+++|++.+.......   .                     ++..++|++   +++.+++++.||.+.++-.
T Consensus       276 ~~~s~~d~~i~v~~~~~~~~~~~~---~---------------------~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  331 (343)
T 3lrv_A          276 IAYSNESNSLTIYKFDKKTKNWTK---D---------------------EESALCLQSDTADFTDMDVVCGDGGIAAILK  331 (343)
T ss_dssp             EEEETTTTEEEEEEECTTTCSEEE---E---------------------EEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred             EEecCCCCcEEEEEEcccccceEe---c---------------------CceeEecCccccccceeEEEecCCceEEEEe
Confidence            99998 999999999776544333   1                     378889998   8999999999999988764


Q ss_pred             CC
Q 038577          611 AD  612 (860)
Q Consensus       611 ~~  612 (860)
                      ..
T Consensus       332 ~~  333 (343)
T 3lrv_A          332 TN  333 (343)
T ss_dssp             CS
T ss_pred             cC
Confidence            43

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=5.5e-28  Score=264.89  Aligned_cols=328  Identities=9%  Similarity=0.015  Sum_probs=263.3

Q ss_pred             EccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCC
Q 038577          197 FSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGL  276 (860)
Q Consensus       197 ~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  276 (860)
                      |+|++.     .+++.+.|++|.+||..++..                            ...+... ..+.+++++|+|
T Consensus       145 ~~p~~~-----~~vs~~~d~~V~v~D~~t~~~----------------------------~~~i~~g-~~~~~v~~spdg  190 (543)
T 1nir_A          145 LDLPNL-----FSVTLRDAGQIALVDGDSKKI----------------------------VKVIDTG-YAVHISRMSASG  190 (543)
T ss_dssp             CCGGGE-----EEEEEGGGTEEEEEETTTCCE----------------------------EEEEECS-TTEEEEEECTTS
T ss_pred             cCCCCE-----EEEEEcCCCeEEEEECCCceE----------------------------EEEEecC-cccceEEECCCC
Confidence            788887     899999999999999887532                            1111111 128899999999


Q ss_pred             CEEEEEEcCCeEEEEEC--CCceeEEEEeecCceeEEEEEee----CCCEEEEEEccCCcEEEEEccCceEEEEecCc--
Q 038577          277 DMVVVGFSNGVFGLYQM--PDFVCIHLLSISREKITTAVFNE----LGNWLVFGCAKLGQLLVWEWRSESYILKQQGH--  348 (860)
Q Consensus       277 ~~l~~~~~~g~i~~~~~--~~~~~~~~~~~~~~~i~~~~~s~----~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~--  348 (860)
                      +++++++.++.|.+||+  .+++.+..+.. ...+..++|+|    +|+++++++..+++|.+||..+++.+..+..+  
T Consensus       191 ~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~  269 (543)
T 1nir_A          191 RYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM  269 (543)
T ss_dssp             CEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE
T ss_pred             CEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCc
Confidence            99999999999999999  88888888875 44679999999    99999999877799999999999988877542  


Q ss_pred             --------c-cCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeeEE--EeecCCCceEEEEEeeCCCEEEEEe-CCCcE
Q 038577          349 --------Y-FDVNCLAYSPDSQL-LATGADDNKVKVWTVSSGFCFV--TFTEHTNAVTALHFMANNHSLLSAS-LDGTV  415 (860)
Q Consensus       349 --------~-~~v~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~i  415 (860)
                              . ..+.++.++|++.. +++...++.|.+||+.+.+.+.  .+ .+...+.++.|+|+++++++++ .+++|
T Consensus       270 ~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v  348 (543)
T 1nir_A          270 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKV  348 (543)
T ss_dssp             CSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEE
T ss_pred             ccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeE
Confidence                    2 26889999997765 5566678999999998765443  33 3667788999999999876554 68899


Q ss_pred             EEEEccccceeeEeeCC---CCCcEEEEEECCC-CCEEEEEecCCCeEEEEECCC-------CceEEEecCcccCeEEEE
Q 038577          416 RAWDLFRYRNFRTFTTP---SSRQFVSLASDQS-GEVICAGTLDSFEIFVWSMKT-------GRLLDILSGHEGPVHGLV  484 (860)
Q Consensus       416 ~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~l~~~~~~~~~i~v~d~~~-------~~~~~~~~~h~~~v~~l~  484 (860)
                      .+||..+++....+...   +......+ ++|+ +..++++..+.++|.+||+.+       ++.++++.+|.+.+..++
T Consensus       349 ~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~  427 (543)
T 1nir_A          349 AVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIK  427 (543)
T ss_dssp             EEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEE
T ss_pred             EEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEE
Confidence            99999999988887753   22222333 4677 555555543333999999998       899999999999999999


Q ss_pred             EcCCCCEEEEEe-------CCCcEEEEEccCCcceeEEc---------ccCCCeEEEEEeeCCCEEEEEe-----CCCeE
Q 038577          485 FSPTNATLASSS-------WDKTVRLWNVFEGKGSVESF---------PHTHDVLTVVYRPDGRQLACST-----LDGQI  543 (860)
Q Consensus       485 ~s~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~---------~~~~~v~~~~~s~~~~~l~~~~-----~dg~i  543 (860)
                      ++|++++|++++       .+++|.+||+.+.+...+..         .+...+..+.|+|+|+.|+++.     .++.|
T Consensus       428 ~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i  507 (543)
T 1nir_A          428 THPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSAL  507 (543)
T ss_dssp             CCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEE
T ss_pred             cCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeE
Confidence            999999999987       27799999999988663432         4567899999999999998763     47999


Q ss_pred             EEEeCCCCceeEEEeccc
Q 038577          544 HFWDPLNGELMYTIEGRR  561 (860)
Q Consensus       544 ~iwd~~~~~~~~~~~~~~  561 (860)
                      .|||..+++++.+++...
T Consensus       508 ~v~D~~t~~~~~~i~~~~  525 (543)
T 1nir_A          508 VVVDDKTLKLKAVVKDPR  525 (543)
T ss_dssp             EEEETTTTEEEEEECCTT
T ss_pred             EEEECCCceEEEeecCCC
Confidence            999999999999998655

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=1.9e-29  Score=267.47  Aligned_cols=255  Identities=13%  Similarity=0.130  Sum_probs=177.7

Q ss_pred             eeCCCEEEEEEccCCcEEEEEccCceEEEE-----ecCcccCeEEEEEcC--------CCCEEEEEeCCCcEEEEECCCC
Q 038577          315 NELGNWLVFGCAKLGQLLVWEWRSESYILK-----QQGHYFDVNCLAYSP--------DSQLLATGADDNKVKVWTVSSG  381 (860)
Q Consensus       315 s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~-----~~~~~~~v~~~~~s~--------~~~~l~~~~~dg~i~iwd~~~~  381 (860)
                      ++++..+++++. |++|++||.+++.....     +.+|...|.+++|+|        |+++||+|+.|++|++||+.++
T Consensus        98 ~~~~~~las~~~-d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~  176 (393)
T 4gq1_A           98 PVYSLFLACVCQ-DNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE  176 (393)
T ss_dssp             CEEEEEEEEEET-TSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred             CCCCCEEEEEeC-CCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence            344555666655 49999999998865432     468999999999998        8899999999999999999999


Q ss_pred             eeEEEeecCCCceEEEEEeeCC-CEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEE
Q 038577          382 FCFVTFTEHTNAVTALHFMANN-HSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIF  460 (860)
Q Consensus       382 ~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~  460 (860)
                      .....+..|..+|.+++|+|++ .+|++++.|++|++||+.+++............         ..          .+.
T Consensus       177 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~---------~~----------~~~  237 (393)
T 4gq1_A          177 GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVK---------NP----------WLL  237 (393)
T ss_dssp             EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CS---------CC----------CSE
T ss_pred             ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcc---------cc----------eEE
Confidence            8888888999999999999987 479999999999999998876544332211100         00          011


Q ss_pred             EEECCCCceEEEecCcccCeEEEEEc-CCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEE-------------
Q 038577          461 VWSMKTGRLLDILSGHEGPVHGLVFS-PTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVV-------------  526 (860)
Q Consensus       461 v~d~~~~~~~~~~~~h~~~v~~l~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~-------------  526 (860)
                      -++...........+|...+.++.|+ |+++.+++++.|+++++||+..++....+..|...+..+.             
T Consensus       238 s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  317 (393)
T 4gq1_A          238 TLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPS  317 (393)
T ss_dssp             EEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCC
T ss_pred             ecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCc
Confidence            11111112223345788999999987 7999999999999999999987765544444444443333             


Q ss_pred             -----Eee--CCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEe
Q 038577          527 -----YRP--DGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAG  599 (860)
Q Consensus       527 -----~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~  599 (860)
                           |+|  ++.++++|+.||.|++||+.+++....+..|..                    +|.+++|+|||++|+++
T Consensus       318 ~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--------------------~V~svafspdG~~LA~a  377 (393)
T 4gq1_A          318 LLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--------------------PIVDFCWHQDGSHLAIA  377 (393)
T ss_dssp             SSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--------------------CEEEEEECTTSSEEEEE
T ss_pred             ceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--------------------cEEEEEEcCCCCEEEEE
Confidence                 333  344677888999999999999998888777654                    59999999999999999


Q ss_pred             cCCCeEEEEEC
Q 038577          600 GSSKYICMYDV  610 (860)
Q Consensus       600 ~~dg~v~vwd~  610 (860)
                      +++| +.+|.+
T Consensus       378 s~~G-v~lvrL  387 (393)
T 4gq1_A          378 TEGS-VLLTRL  387 (393)
T ss_dssp             ESSE-EEEEEE
T ss_pred             eCCC-eEEEEE
Confidence            8777 666654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8.9e-29  Score=257.68  Aligned_cols=266  Identities=8%  Similarity=0.046  Sum_probs=215.5

Q ss_pred             EecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc---------CceE
Q 038577          271 DYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR---------SESY  341 (860)
Q Consensus       271 ~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~---------~~~~  341 (860)
                      .+.+++.++++|+.||.|++||+.+++.+..+.  ...+.++.++|+   ++++ +.|+.+++|+..         +++.
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~-s~D~~i~~w~~~~~~~~~~~~~~~~  116 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISR-GPCNRLLLLYPGNQITILDSKTNKV  116 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEE-CSTTEEEEEETTTEEEEEETTTCCE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEe-cCCCeEEEEEccCceEEeecCCcce
Confidence            345678899999999999999999998888776  456778888887   5544 455999999765         4443


Q ss_pred             EEEe-cCcccCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeeEEEee-cCCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 038577          342 ILKQ-QGHYFDVNCLAYSP--DSQLLATGADDNKVKVWTVSSGFCFVTFT-EHTNAVTALHFMANNHSLLSASLDGTVRA  417 (860)
Q Consensus       342 ~~~~-~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~s~~~dg~i~~  417 (860)
                      +... ..|...|.+++|+|  +++++++++.||.|++||+++++...... .|...+.+++|+|++.++++|+.||.|++
T Consensus       117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i  196 (343)
T 3lrv_A          117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV  196 (343)
T ss_dssp             EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred             eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence            4443 36778899999999  99999999999999999999998877664 45568999999999999999999999999


Q ss_pred             EEcccccee-eEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC---cccCeE--EEEEcCCCCE
Q 038577          418 WDLFRYRNF-RTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG---HEGPVH--GLVFSPTNAT  491 (860)
Q Consensus       418 wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~---h~~~v~--~l~~s~~~~~  491 (860)
                      ||+++++.. ..+...+...+.+++|+|++.+|++++ ++ .|++||+++++....+..   |...+.  +++|+|++++
T Consensus       197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  274 (343)
T 3lrv_A          197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQ-TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN  274 (343)
T ss_dssp             EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SS-BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSE
T ss_pred             EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CC-eEEEEEcCCCCcceeecccccccccccceEEEECCCCCE
Confidence            999999887 666665678999999999999999999 55 899999999877655543   444444  6999999999


Q ss_pred             EEEEeC-CCcEEEEEccCCcceeEEcccCCCeEEEEEee---CCCEEEEEeCCCeEEEEeC
Q 038577          492 LASSSW-DKTVRLWNVFEGKGSVESFPHTHDVLTVVYRP---DGRQLACSTLDGQIHFWDP  548 (860)
Q Consensus       492 l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iwd~  548 (860)
                      |++++. |+.+++|++.........    .++..++|+|   +.+.+++++.||.+.++-.
T Consensus       275 l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  331 (343)
T 3lrv_A          275 MIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILK  331 (343)
T ss_dssp             EEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred             EEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEe
Confidence            999998 999999999766543333    5678889998   8899999999999988753

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.96  E-value=1.1e-26  Score=269.55  Aligned_cols=324  Identities=9%  Similarity=0.043  Sum_probs=253.3

Q ss_pred             CCceEEEEecCCCCEEEEEEc-CC-----eEEEEECCCceeEEEEeecCc------------------------eeEEEE
Q 038577          264 PSKVTACDYHRGLDMVVVGFS-NG-----VFGLYQMPDFVCIHLLSISRE------------------------KITTAV  313 (860)
Q Consensus       264 ~~~v~~~~~~~~~~~l~~~~~-~g-----~i~~~~~~~~~~~~~~~~~~~------------------------~i~~~~  313 (860)
                      ...+.+++|+|||++|++++. +|     .|++||+.+++....+..+..                        .+..++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            456899999999999999998 88     999999999887776655432                        378999


Q ss_pred             EeeCCCEEEEEEccCCcEEEEEccCce--EEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCC
Q 038577          314 FNELGNWLVFGCAKLGQLLVWEWRSES--YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHT  391 (860)
Q Consensus       314 ~s~~~~~l~~~~~~~g~i~v~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  391 (860)
                      |+|||+.+++++.  +.|++||+.++.  ....+..|...+.+++|+|||++|++++. +.|++||+.+++.......+.
T Consensus       116 ~SpDg~~l~~~~~--~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~  192 (741)
T 2ecf_A          116 WSPDAQRLLFPLG--GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGS  192 (741)
T ss_dssp             ECTTSSEEEEEET--TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCC
T ss_pred             ECCCCCEEEEEeC--CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCc
Confidence            9999999999876  899999999872  33445667788999999999999999875 699999999887766554444


Q ss_pred             Cc----------------eEEEEEeeCCCEEEEEeCCC---------------------------------cEEEEEccc
Q 038577          392 NA----------------VTALHFMANNHSLLSASLDG---------------------------------TVRAWDLFR  422 (860)
Q Consensus       392 ~~----------------v~~i~~~~~~~~l~s~~~dg---------------------------------~i~~wd~~~  422 (860)
                      ..                +.+++|+|||++|++++.|+                                 .|.+||+.+
T Consensus       193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~  272 (741)
T 2ecf_A          193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE  272 (741)
T ss_dssp             SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred             cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence            32                47899999999999988765                                 788999988


Q ss_pred             -cceeeEeeC-CCCCcEEEEEECCCCCEEEEEec----CCCeEEEEECCCCceEEEecCccc----CeEEEEEcCCCCEE
Q 038577          423 -YRNFRTFTT-PSSRQFVSLASDQSGEVICAGTL----DSFEIFVWSMKTGRLLDILSGHEG----PVHGLVFSPTNATL  492 (860)
Q Consensus       423 -~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~v~d~~~~~~~~~~~~h~~----~v~~l~~s~~~~~l  492 (860)
                       ++....... .+...+..++| |||+.|+++..    +...|++||+.+++....+..+..    .+.+++|+|||+++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~  351 (741)
T 2ecf_A          273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSIL  351 (741)
T ss_dssp             TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEE
T ss_pred             CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEE
Confidence             765443322 34567889999 99999998764    123899999999998877765553    45689999999999


Q ss_pred             EEEeCCCcEEEEEcc-CCcceeEEcccCCCeEEE-EEeeCCCEEEEE-eCCC--eEEEEeCCC-CceeEEEecccccCCC
Q 038577          493 ASSSWDKTVRLWNVF-EGKGSVESFPHTHDVLTV-VYRPDGRQLACS-TLDG--QIHFWDPLN-GELMYTIEGRRDISGG  566 (860)
Q Consensus       493 ~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~-~~dg--~i~iwd~~~-~~~~~~~~~~~~~~~~  566 (860)
                      ++++.||.+++|.+. .+. ...+..+...+..+ .|+|+|+.|+.. +.++  .+++|++.. +.....+....     
T Consensus       352 ~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~-----  425 (741)
T 2ecf_A          352 WSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAP-----  425 (741)
T ss_dssp             EEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSC-----
T ss_pred             EEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCC-----
Confidence            999999988888876 334 55555677888887 599999977554 4455  899999864 54445554422     


Q ss_pred             ccccccccccccCCCCcEEEEEEecCCCEEEEecCC----CeEEEEECCCc
Q 038577          567 RLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSS----KYICMYDVADQ  613 (860)
Q Consensus       567 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d----g~v~vwd~~~~  613 (860)
                                      .+..++|||||++|+....+    ..+.+|+...+
T Consensus       426 ----------------~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~  460 (741)
T 2ecf_A          426 ----------------GMHSASFARNASVYVDSWSNNSTPPQIELFRANGE  460 (741)
T ss_dssp             ----------------SEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred             ----------------CceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence                            37899999999998876543    57889988654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=1.3e-26  Score=246.70  Aligned_cols=300  Identities=9%  Similarity=0.061  Sum_probs=237.1

Q ss_pred             ccCeeEEEEcCCCC-EEEEEc----CCC----cEEEEEc--ccCeEEEE--ee-cCCceeEEEECC--------------
Q 038577           52 SSNICRIAVSPDGT-FLLTVD----ENQ----RCHFINL--HCHVVLHR--VR-FKYPVNAILFSP--------------  103 (860)
Q Consensus        52 ~~~v~~va~spdg~-~la~~~----~d~----~i~vwd~--~~~~~~~~--~~-~~~~v~~~~fsp--------------  103 (860)
                      ...+...+|++.|. ++++++    .+|    .+++||+  .+++++..  +. |...+..+++++              
T Consensus        62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~  141 (415)
T 2hqs_A           62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA  141 (415)
T ss_dssp             GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence            34677888888885 555664    467    8999999  89987744  44 667777777764              


Q ss_pred             CCCEEEEE-eC------CeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCC---eEEEEeeccc
Q 038577          104 NGKYIAVG-TG------KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDL---AVRLFYVKEK  173 (860)
Q Consensus       104 dg~~la~~-~~------~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg---~v~vwd~~~~  173 (860)
                      .+..++++ .+      +.|++||+.++.        ...+.+|...+.+++|+|||++|++++.++   .|++||+.++
T Consensus       142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~~--------~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg  213 (415)
T 2hqs_A          142 FRTRIAYVVQTNGGQFPYELRVSDYDGYN--------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG  213 (415)
T ss_dssp             TTCEEEEEEECSSSSCCEEEEEEETTSCS--------CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred             CCCEEEEEEecCCCCccceEEEEcCCCCC--------CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC
Confidence            25566655 33      799999998654        366778999999999999999999999875   9999999887


Q ss_pred             ccCcccccceEeecCCCcEEEEEEccCCCCCccceEE-EEcCCcc--EEEeeecCCCCCCccccCCCCCCCCCCCcceee
Q 038577          174 LKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIY-TIARDCY--MFSWGFSGNDGKIDETMEDSEPPSPGTPERRVK  250 (860)
Q Consensus       174 ~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~-s~~~dg~--i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (860)
                             ....+..|.+.+.+++|+||++     .|+ +++.++.  |++||+.++..                      
T Consensus       214 -------~~~~l~~~~~~~~~~~~spdg~-----~la~~~~~~g~~~i~~~d~~~~~~----------------------  259 (415)
T 2hqs_A          214 -------AVRQVASFPRHNGAPAFSPDGS-----KLAFALSKTGSLNLYVMDLASGQI----------------------  259 (415)
T ss_dssp             -------CEEEEECCSSCEEEEEECTTSS-----EEEEEECTTSSCEEEEEETTTCCE----------------------
T ss_pred             -------cEEEeecCCCcccCEEEcCCCC-----EEEEEEecCCCceEEEEECCCCCE----------------------
Confidence                   2346778888999999999998     777 6666655  88898876421                      


Q ss_pred             eEEeeeeccccCCCCceEEEEecCCCCEEEEEEcC-C--eEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEcc
Q 038577          251 KWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSN-G--VFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK  327 (860)
Q Consensus       251 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-g--~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~  327 (860)
                             ..+..+...+.+++|+|+|+.|++++.+ |  .|++||+.+++. ..+..+...+..++|+|+|+++++++.+
T Consensus       260 -------~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~  331 (415)
T 2hqs_A          260 -------RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSN  331 (415)
T ss_dssp             -------EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEEC
T ss_pred             -------EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECc
Confidence                   2334556789999999999999988864 4  788889987764 3455566788999999999999998876


Q ss_pred             C--CcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCeeEEEeecCCCceEEEEEeeC
Q 038577          328 L--GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDN---KVKVWTVSSGFCFVTFTEHTNAVTALHFMAN  402 (860)
Q Consensus       328 ~--g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~  402 (860)
                      +  ..|.+||+.+++.. .+..+. .+.+++|+|+|+.|++++.++   .|++||+. +.....+..|.+.|.+++|+|.
T Consensus       332 ~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~  408 (415)
T 2hqs_A          332 GGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPY  408 (415)
T ss_dssp             SSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCC
T ss_pred             CCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccc
Confidence            3  48999999988764 444554 799999999999999988877   79999986 6667788899999999999996


Q ss_pred             CC
Q 038577          403 NH  404 (860)
Q Consensus       403 ~~  404 (860)
                      ..
T Consensus       409 ~~  410 (415)
T 2hqs_A          409 LH  410 (415)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=2.5e-26  Score=266.65  Aligned_cols=320  Identities=10%  Similarity=0.053  Sum_probs=242.0

Q ss_pred             ccCeeEEEEcCCCCEEEEEcC-CC-----cEEEEEcccCeEEEEeec-C------------------------CceeEEE
Q 038577           52 SSNICRIAVSPDGTFLLTVDE-NQ-----RCHFINLHCHVVLHRVRF-K------------------------YPVNAIL  100 (860)
Q Consensus        52 ~~~v~~va~spdg~~la~~~~-d~-----~i~vwd~~~~~~~~~~~~-~------------------------~~v~~~~  100 (860)
                      ...+.+++|||||++||+++. ++     .|++||+.+++....+.+ .                        ..+.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            456899999999999999988 87     899999999988777652 2                        2388999


Q ss_pred             ECCCCCEEEEEeCCeEEEEeCCCC---CcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCc
Q 038577          101 FSPNGKYIAVGTGKLVQIWRSPGF---KKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGI  177 (860)
Q Consensus       101 fspdg~~la~~~~~~i~iwd~~~~---~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~  177 (860)
                      |||||++|+++..+.|++||+.++   +        ...+..|...+.+++|||||++|++++. +.|++||+.++    
T Consensus       116 ~SpDg~~l~~~~~~~i~~~d~~~~~~~~--------~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g----  182 (741)
T 2ecf_A          116 WSPDAQRLLFPLGGELYLYDLKQEGKAA--------VRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASG----  182 (741)
T ss_dssp             ECTTSSEEEEEETTEEEEEESSSCSTTS--------CCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTT----
T ss_pred             ECCCCCEEEEEeCCcEEEEECCCCCcce--------EEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCC----
Confidence            999999999998899999999987   4        2456778889999999999999999874 69999999876    


Q ss_pred             ccccceEeecCCCc----------------EEEEEEccCCCCCccceEEEEcCCc-------------------------
Q 038577          178 HTNKPFLLLGHRDS----------------VVGCFFSVDKKTDKVNRIYTIARDC-------------------------  216 (860)
Q Consensus       178 ~~~~~~~~~~h~~~----------------i~~~~~~~~~~~~~~~~l~s~~~dg-------------------------  216 (860)
                        ........+...                +..++|+|||+     +|++++.|+                         
T Consensus       183 --~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~-----~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~  255 (741)
T 2ecf_A          183 --RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDS-----AIAYARIDESPVPVQKRYEVYADRTDVIEQRYPA  255 (741)
T ss_dssp             --EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSS-----CEEEEEEECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred             --CEEEeccCCccceeccccceeeeeccccccceEECCCCC-----EEEEEEEcCCCCceEecCCCCCCcccceEeecCC
Confidence              222222233322                46799999999     899987765                         


Q ss_pred             --------cEEEeeecC-CCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEc---
Q 038577          217 --------YMFSWGFSG-NDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFS---  284 (860)
Q Consensus       217 --------~i~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---  284 (860)
                              .|++||+.+ +..                      .    .......+...+..++| |||+.|+++..   
T Consensus       256 ~g~~~~~~~l~~~d~~~~~~~----------------------~----~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~  308 (741)
T 2ecf_A          256 AGDANVQVKLGVISPAEQAQT----------------------Q----WIDLGKEQDIYLARVNW-RDPQHLSFQRQSRD  308 (741)
T ss_dssp             TTSCCCEEEEEEECSSTTCCC----------------------E----EECCCSCSSEEEEEEEE-EETTEEEEEEEETT
T ss_pred             CCCCCCeeEEEEEECCCCCce----------------------E----EecCCCCcceEEEEEEe-CCCCEEEEEEeccc
Confidence                    667777665 432                      0    00000135567899999 99999997765   


Q ss_pred             --CCeEEEEECCCceeEEEEeecCc----eeEEEEEeeCCCEEEEEEccCCcEEEEEcc-CceEEEEecCcccCeEEE-E
Q 038577          285 --NGVFGLYQMPDFVCIHLLSISRE----KITTAVFNELGNWLVFGCAKLGQLLVWEWR-SESYILKQQGHYFDVNCL-A  356 (860)
Q Consensus       285 --~g~i~~~~~~~~~~~~~~~~~~~----~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~-~~~~~~~~~~~~~~v~~~-~  356 (860)
                        +..|++||+.+++....+..+..    .+..++|+|||+.+++ +..+|...+|.+. ++. ...+..|...+..+ .
T Consensus       309 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~-~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~  386 (741)
T 2ecf_A          309 QKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWS-SERTGFQHLYRIDSKGK-AAALTHGNWSVDELLA  386 (741)
T ss_dssp             SSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEE-ECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEE
T ss_pred             CCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEE-ecCCCccEEEEEcCCCC-eeeeeecceEEEeEeE
Confidence              57899999999888777665543    4568999999995544 4556877777765 344 66677777788887 5


Q ss_pred             EcCCCCEEEEE-eCCC--cEEEEECCC-CeeEEEeecCCCceEEEEEeeCCCEEEEEeCC----CcEEEEEcc
Q 038577          357 YSPDSQLLATG-ADDN--KVKVWTVSS-GFCFVTFTEHTNAVTALHFMANNHSLLSASLD----GTVRAWDLF  421 (860)
Q Consensus       357 ~s~~~~~l~~~-~~dg--~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d----g~i~~wd~~  421 (860)
                      |+|+|+.++.. +.++  .+++|++.. +.....+.. ...+..++|+||++.++....+    ..+.+|+..
T Consensus       387 ~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~  458 (741)
T 2ecf_A          387 VDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRAN  458 (741)
T ss_dssp             EETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred             EeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence            99999977654 4454  899999864 555566654 6678899999999988866443    357777764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=3.4e-26  Score=243.57  Aligned_cols=293  Identities=13%  Similarity=0.040  Sum_probs=228.0

Q ss_pred             EEEe-CCC-EEEeee-----CC----eEEEEEC--CCCcEE--eeccCCccCeeEEEEcC--------------CCCEEE
Q 038577           18 AVLS-QNT-KLISPV-----GN----RVSVTDL--IKSKTV--TLPVESSSNICRIAVSP--------------DGTFLL   68 (860)
Q Consensus        18 ~~~s-dg~-~l~~~~-----~~----~i~v~d~--~~~~~~--~~~~~h~~~v~~va~sp--------------dg~~la   68 (860)
                      ..|+ +|. +++++.     +|    .|++||+  .+++++  ..+.+|...+..+++++              .+..++
T Consensus        68 ~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~  147 (415)
T 2hqs_A           68 AAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIA  147 (415)
T ss_dssp             HHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEE
T ss_pred             HHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEE
Confidence            4455 554 454553     46    7999999  998876  44668988898888875              266777


Q ss_pred             EEcCC------CcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEe-C---CeEEEEeCCCCCcccceeEEEEEee
Q 038577           69 TVDEN------QRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGT-G---KLVQIWRSPGFKKEVFAFELIRTLA  138 (860)
Q Consensus        69 ~~~~d------~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~-~---~~i~iwd~~~~~~~~~~~~~~~~~~  138 (860)
                      +++.+      +.|++||+..+.......|...+.+++|||||++||++. +   ..|++||+.+++.        ..+.
T Consensus       148 ~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~--------~~l~  219 (415)
T 2hqs_A          148 YVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--------RQVA  219 (415)
T ss_dssp             EEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--------EEEE
T ss_pred             EEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE--------EEee
Confidence            76654      799999998665555555889999999999999999983 3   4999999998862        4567


Q ss_pred             ccCCCeEEEEEcCCCCeEE-EeecCCe--EEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcC-
Q 038577          139 DCNDKVTALNWSPDSNYLL-VGSKDLA--VRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR-  214 (860)
Q Consensus       139 ~h~~~v~~l~~s~d~~~l~-s~~~dg~--v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~-  214 (860)
                      .|.+.+.+++|+|||++|+ +++.++.  |++||+.++       ....+..|...+.+++|+||++     +|++++. 
T Consensus       220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~-------~~~~l~~~~~~~~~~~~spdg~-----~l~~~s~~  287 (415)
T 2hqs_A          220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-------QIRQVTDGRSNNTEPTWFPDSQ-----NLAFTSDQ  287 (415)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-------CEEECCCCSSCEEEEEECTTSS-----EEEEEECT
T ss_pred             cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC-------CEEeCcCCCCcccceEECCCCC-----EEEEEECC
Confidence            7888999999999999888 5555554  899998876       2466778889999999999999     8888876 


Q ss_pred             Cc--cEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcC---CeEE
Q 038577          215 DC--YMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSN---GVFG  289 (860)
Q Consensus       215 dg--~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---g~i~  289 (860)
                      ++  .|++|++.++..                             ..+..+...+.+++|+|+|++|++++.+   +.|.
T Consensus       288 ~g~~~i~~~d~~~~~~-----------------------------~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~  338 (415)
T 2hqs_A          288 AGRPQVYKVNINGGAP-----------------------------QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIA  338 (415)
T ss_dssp             TSSCEEEEEETTSSCC-----------------------------EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEE
T ss_pred             CCCcEEEEEECCCCCE-----------------------------EEEecCCCcccCeEECCCCCEEEEEECcCCceEEE
Confidence            45  566777765422                             1122344578899999999999988765   5899


Q ss_pred             EEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCC--cEEEEEccCceEEEEecCcccCeEEEEEcCCCC
Q 038577          290 LYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLG--QLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQ  362 (860)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g--~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~  362 (860)
                      +||+.+++.. .+..+. .+.+++|+|+|+.+++++.+.+  .|++||+. +.....+..|.+.|.+++|+|...
T Consensus       339 ~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          339 KQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             EEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred             EEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence            9999887764 444443 8899999999999999988755  79999987 445667788999999999999653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.95  E-value=2.2e-26  Score=266.50  Aligned_cols=347  Identities=13%  Similarity=0.124  Sum_probs=248.7

Q ss_pred             CCcEEEe-CCCEEEeeeCCeEEEEECCCCcEEeeccCCcc---CeeEEEEcCCCCEEEEEcCC---------CcEEEEEc
Q 038577           15 GGNAVLS-QNTKLISPVGNRVSVTDLIKSKTVTLPVESSS---NICRIAVSPDGTFLLTVDEN---------QRCHFINL   81 (860)
Q Consensus        15 ~~~~~~s-dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~---~v~~va~spdg~~la~~~~d---------~~i~vwd~   81 (860)
                      ...++|| ||+++++..++.|++||+.+++...++.+|..   .|.+++|||||++||+++.+         +.+.+||+
T Consensus        19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~   98 (723)
T 1xfd_A           19 DPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKI   98 (723)
T ss_dssp             CCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred             ccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEEC
Confidence            3468899 99988777778999999999998777766665   49999999999999998764         78889999


Q ss_pred             ccCeEEEEee----cCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCC--------------
Q 038577           82 HCHVVLHRVR----FKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDK--------------  143 (860)
Q Consensus        82 ~~~~~~~~~~----~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~--------------  143 (860)
                      .+++. ..+.    +...+.+++|||||++||++.++.|++||+.+++.       ......+...              
T Consensus        99 ~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~-------~~~~~~~~~~~~~~g~~~~v~~ee  170 (723)
T 1xfd_A           99 PHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQA-------IRVVSTGKEGVIYNGLSDWLYEEE  170 (723)
T ss_dssp             SSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCC-------EEEECCCBTTTEEEEECCHHHHHT
T ss_pred             CCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCce-------EEEecCCCCCceECcccceeEEEE
Confidence            99876 3333    33348999999999999999989999999998763       2333333332              


Q ss_pred             ----eEEEEEcCCCCeEEEeecC-CeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccE
Q 038577          144 ----VTALNWSPDSNYLLVGSKD-LAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYM  218 (860)
Q Consensus       144 ----v~~l~~s~d~~~l~s~~~d-g~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i  218 (860)
                          +.+++|||||++|++++.| +.+.+|++... ..          .+...+..+.|.++|.     .    ..+..+
T Consensus       171 ~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~-~~----------~~~~~~~~~~~~~~G~-----~----~~~~~l  230 (723)
T 1xfd_A          171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTY-TG----------SIYPTVKPYHYPKAGS-----E----NPSISL  230 (723)
T ss_dssp             TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCC-SS----------SSSCCCEEEECCBTTS-----C----CCEEEE
T ss_pred             eccCcceEEECCCCCEEEEEEECCCccceEEeecc-CC----------cCCCcceeccCCCCCC-----C----CCeeEE
Confidence                3789999999999988754 56888887644 11          1233477888888875     3    345689


Q ss_pred             EEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcC----CeEEEEECC
Q 038577          219 FSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSN----GVFGLYQMP  294 (860)
Q Consensus       219 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~----g~i~~~~~~  294 (860)
                      ++||+.++...                      ..+.....+..+...+..++|+|||+.+++....    ..|++||+.
T Consensus       231 ~~~d~~~~~~~----------------------~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~  288 (723)
T 1xfd_A          231 HVIGLNGPTHD----------------------LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDAT  288 (723)
T ss_dssp             EEEESSSSCCC----------------------EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETT
T ss_pred             EEEECCCCcee----------------------EEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCC
Confidence            99999875420                      0000011112235578999999999988776543    579999999


Q ss_pred             CceeEEEEeec-Ccee----EEEEEeeCCCEEEEE-EccCC------cEEEEE-ccCce--EEEEecCcccCeEE-EEEc
Q 038577          295 DFVCIHLLSIS-REKI----TTAVFNELGNWLVFG-CAKLG------QLLVWE-WRSES--YILKQQGHYFDVNC-LAYS  358 (860)
Q Consensus       295 ~~~~~~~~~~~-~~~i----~~~~~s~~~~~l~~~-~~~~g------~i~v~d-~~~~~--~~~~~~~~~~~v~~-~~~s  358 (860)
                      +++....+..+ ...+    ..++|+|||+.+++. +..++      .|.+|| ..++.  ....+..+...+.. ++|+
T Consensus       289 ~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~s  368 (723)
T 1xfd_A          289 TGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYD  368 (723)
T ss_dssp             TCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEE
T ss_pred             CCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEc
Confidence            88877665443 2333    378999999998876 55556      566777 34433  13334333344554 6999


Q ss_pred             CCCCEEEEEeCC---CcEEEEECCCCe--eEEEeec---CCCceEEEEEeeCCCEEEEEeC
Q 038577          359 PDSQLLATGADD---NKVKVWTVSSGF--CFVTFTE---HTNAVTALHFMANNHSLLSASL  411 (860)
Q Consensus       359 ~~~~~l~~~~~d---g~i~iwd~~~~~--~~~~~~~---~~~~v~~i~~~~~~~~l~s~~~  411 (860)
                      |||+.|+..+.+   +.+++|++....  ....+..   |...+..++|+|++++++....
T Consensus       369 pdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~  429 (723)
T 1xfd_A          369 EKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE  429 (723)
T ss_dssp             TTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred             CCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence            999999876655   789999986432  3333443   5677889999999998876543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.95  E-value=1.3e-25  Score=259.07  Aligned_cols=320  Identities=13%  Similarity=0.079  Sum_probs=233.6

Q ss_pred             cEEEeCCCEEEeeeCCeEEEEECCCCcE--EeeccCCc-----------------cCeeEEEEcCCCCEEEEEcCCCcEE
Q 038577           17 NAVLSQNTKLISPVGNRVSVTDLIKSKT--VTLPVESS-----------------SNICRIAVSPDGTFLLTVDENQRCH   77 (860)
Q Consensus        17 ~~~~sdg~~l~~~~~~~i~v~d~~~~~~--~~~~~~h~-----------------~~v~~va~spdg~~la~~~~d~~i~   77 (860)
                      .+.|+ |+.+++..++.| +||+.+++.  ..+. .|.                 ..|.+++|||| ++++++. ++.++
T Consensus        30 ~~~w~-g~~~~~~~~~~i-~~d~~tg~~~~~~l~-~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i~  104 (706)
T 2z3z_A           30 GLQWM-GDNYVFIEGDDL-VFNKANGKSAQTTRF-SAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGLV  104 (706)
T ss_dssp             TCEEE-TTEEEEEETTEE-EEEC-------CEEE-EHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTEEE
T ss_pred             CCcCc-CCeEEEEeCCcE-EEECCCCcEeeEEee-chhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCEEE
Confidence            35666 667777766668 999999988  4443 443                 46999999999 6666553 59999


Q ss_pred             EEEcccCeEEEEeecCCceeEEEECCCCCEEEEEeCCeEEEEeCCC-----CCcccceeEEEEEeeccCCC---------
Q 038577           78 FINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPG-----FKKEVFAFELIRTLADCNDK---------  143 (860)
Q Consensus        78 vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~-----~~~~~~~~~~~~~~~~h~~~---------  143 (860)
                      +||+.+++......+...+.+++|||||++||++.++.|++|++.+     ++.       ......+...         
T Consensus       105 ~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~-------~~~~~~~~~~~~~g~~~~~  177 (706)
T 2z3z_A          105 GFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRA-------IAVTIDGTETLVYGQAVHQ  177 (706)
T ss_dssp             EEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCC-------EESCSCCBTTEEESSCCGG
T ss_pred             EEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCc-------EEeccCCCCCeEcccchhh
Confidence            9999999887777778889999999999999999999999999988     653       2222223332         


Q ss_pred             -----eEEEEEcCCCCeEEEee---------------------------------cCCeEEEEeecccccCcccccceEe
Q 038577          144 -----VTALNWSPDSNYLLVGS---------------------------------KDLAVRLFYVKEKLKGIHTNKPFLL  185 (860)
Q Consensus       144 -----v~~l~~s~d~~~l~s~~---------------------------------~dg~v~vwd~~~~~~~~~~~~~~~~  185 (860)
                           +.+++|||||++|++++                                 .+..|.+||+.++ +.   ......
T Consensus       178 ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~-~~---~~~~~~  253 (706)
T 2z3z_A          178 REFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG-KT---VYLQTG  253 (706)
T ss_dssp             GCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT-EE---EECCCC
T ss_pred             hhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC-ce---EeeccC
Confidence                 58999999999999987                                 4467999999877 11   111112


Q ss_pred             ecCCCcEEEEEEccCCCCCccceEEEEcCCc-----cEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccc
Q 038577          186 LGHRDSVVGCFFSVDKKTDKVNRIYTIARDC-----YMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDF  260 (860)
Q Consensus       186 ~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg-----~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (860)
                      ..|...+..++|+||++     +|++++.++     .|++||..++..                       .........
T Consensus       254 ~~~~~~~~~~~~spdg~-----~l~~~~~~~~~~~~~v~~~d~~~g~~-----------------------~~~~~~~~~  305 (706)
T 2z3z_A          254 EPKEKFLTNLSWSPDEN-----ILYVAEVNRAQNECKVNAYDAETGRF-----------------------VRTLFVETD  305 (706)
T ss_dssp             SCTTCEEEEEEECTTSS-----EEEEEEECTTSCEEEEEEEETTTCCE-----------------------EEEEEEEEC
T ss_pred             CCCceeEeeEEEECCCC-----EEEEEEeCCCCCeeEEEEEECCCCce-----------------------eeEEEEccC
Confidence            25778899999999999     899887665     899999887521                       111110001


Q ss_pred             cCCCCceEEEEecC--CCCEEEEEEcCCeEEEEECC-CceeEEEEeecCceeEE-EEEeeCCCEEEEEEccCC----cEE
Q 038577          261 SQAPSKVTACDYHR--GLDMVVVGFSNGVFGLYQMP-DFVCIHLLSISREKITT-AVFNELGNWLVFGCAKLG----QLL  332 (860)
Q Consensus       261 ~~~~~~v~~~~~~~--~~~~l~~~~~~g~i~~~~~~-~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~~~g----~i~  332 (860)
                      ......+.+++|+|  +|++++++..+|.+.+|.+. ++.....+..+...+.. ++|+|+|+.+++++..++    .|.
T Consensus       306 ~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~  385 (706)
T 2z3z_A          306 KHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFY  385 (706)
T ss_dssp             SSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEE
T ss_pred             CCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEE
Confidence            11111245689999  99999999999988888876 66777777777767776 799999999998887765    677


Q ss_pred             EEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCC----CcEEEEECCCCe
Q 038577          333 VWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADD----NKVKVWTVSSGF  382 (860)
Q Consensus       333 v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~  382 (860)
                      .||..++.. ..+ .+...+.+++|+|+|++++....+    +.|++||+.+++
T Consensus       386 ~~d~~~~~~-~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          386 CIDIKGGKT-KDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             EEETTCCCC-EES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             EEEcCCCCc-eec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            777777652 233 366779999999999998876543    469999998877

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=1.1e-25  Score=260.60  Aligned_cols=368  Identities=10%  Similarity=0.073  Sum_probs=264.5

Q ss_pred             CeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCC---cEEEEEEccCCCCCccceEEEEcCC----
Q 038577          143 KVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRD---SVVGCFFSVDKKTDKVNRIYTIARD----  215 (860)
Q Consensus       143 ~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~---~i~~~~~~~~~~~~~~~~l~s~~~d----  215 (860)
                      .+.+++|+|||+++++ +.||.|++||+.++      .....+.+|..   .+.+++|+|||+     +|++++.+    
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g------~~~~~~~~~~~~~~~v~~~~~SpDg~-----~l~~~~~~~~~~   85 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETN------TSTVLIEGKKIESLRAIRYEISPDRE-----YALFSYNVEPIY   85 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGC------CCEEEECTTTTTTTTCSEEEECTTSS-----EEEEEESCCCCS
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCC------cEEEEeccccccccccceEEECCCCC-----EEEEEecCccce
Confidence            4678899999997776 78999999999988      44556666654   489999999999     99998764    


Q ss_pred             -----ccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEE
Q 038577          216 -----CYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGL  290 (860)
Q Consensus       216 -----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~  290 (860)
                           +.+++||+.++...                          .......+...+..++|+|||+.|+.++. +.|++
T Consensus        86 ~~~~~~~i~~~d~~~~~~~--------------------------~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~  138 (723)
T 1xfd_A           86 QHSYTGYYVLSKIPHGDPQ--------------------------SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYY  138 (723)
T ss_dssp             SSCCCSEEEEEESSSCCCE--------------------------ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEE
T ss_pred             eecceeeEEEEECCCCceE--------------------------eccCCccccccccccEECCCCCEEEEEEC-CeEEE
Confidence                 78889999875420                          01111233345788999999999999886 79999


Q ss_pred             EECCCceeEEEEeecCcee------------------EEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCe
Q 038577          291 YQMPDFVCIHLLSISREKI------------------TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDV  352 (860)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~i------------------~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v  352 (860)
                      |++.+++.......+...+                  .+++|+|||+.|+++..+++.+.+|++....     ..+...+
T Consensus       139 ~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~-----~~~~~~~  213 (723)
T 1xfd_A          139 CAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT-----GSIYPTV  213 (723)
T ss_dssp             ESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS-----SSSSCCC
T ss_pred             EECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccC-----CcCCCcc
Confidence            9999888776655543333                  7899999999999998877778888764322     1233457


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecC------CCceEEEEEeeCCCEEEEEeC----CCcEEEEEccc
Q 038577          353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEH------TNAVTALHFMANNHSLLSASL----DGTVRAWDLFR  422 (860)
Q Consensus       353 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~i~~~~~~~~l~s~~~----dg~i~~wd~~~  422 (860)
                      ..+.|.++|..    ..+..|++||+.+++....+..+      ...+..++|+|||+.+++...    +..|++||+.+
T Consensus       214 ~~~~~~~~G~~----~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~  289 (723)
T 1xfd_A          214 KPYHYPKAGSE----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT  289 (723)
T ss_dssp             EEEECCBTTSC----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT
T ss_pred             eeccCCCCCCC----CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC
Confidence            88889888763    33458999999988865666554      567899999999998876643    35799999998


Q ss_pred             cceeeEeeCCCCCcE----EEEEECCCCCEEEEE-ecCCC------eEEEEE-CCCCce--EEEecCcccCeEE-EEEcC
Q 038577          423 YRNFRTFTTPSSRQF----VSLASDQSGEVICAG-TLDSF------EIFVWS-MKTGRL--LDILSGHEGPVHG-LVFSP  487 (860)
Q Consensus       423 ~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~-~~~~~------~i~v~d-~~~~~~--~~~~~~h~~~v~~-l~~s~  487 (860)
                      ++....+.......+    ..++|+|||+.|+.. +...+      .|++|| ..+++.  ...+..+...+.. ++|+|
T Consensus       290 g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~sp  369 (723)
T 1xfd_A          290 GVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE  369 (723)
T ss_dssp             CCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET
T ss_pred             CcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcC
Confidence            887665543322222    367999999988765 44433      588888 444441  4445444444554 69999


Q ss_pred             CCCEEEEEeCC---CcEEEEEccCCc--ceeEEcc---cCCCeEEEEEeeCCCEEEEEeCCC---eEEEEeCCCCceeEE
Q 038577          488 TNATLASSSWD---KTVRLWNVFEGK--GSVESFP---HTHDVLTVVYRPDGRQLACSTLDG---QIHFWDPLNGELMYT  556 (860)
Q Consensus       488 ~~~~l~s~~~d---g~i~iwd~~~~~--~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~  556 (860)
                      ||+.|+..+.+   +.+++|++....  ....+..   +...+..++|+|||++++.....-   ...+++..+++.+..
T Consensus       370 dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~  449 (723)
T 1xfd_A          370 KGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFD  449 (723)
T ss_dssp             TTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEE
T ss_pred             CCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEE
Confidence            99999876665   789999986542  1222222   567789999999999888764332   245567767766655


Q ss_pred             Ee
Q 038577          557 IE  558 (860)
Q Consensus       557 ~~  558 (860)
                      +.
T Consensus       450 ~~  451 (723)
T 1xfd_A          450 LE  451 (723)
T ss_dssp             EE
T ss_pred             ec
Confidence            54

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=3.7e-24  Score=246.81  Aligned_cols=317  Identities=9%  Similarity=0.083  Sum_probs=227.6

Q ss_pred             CeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeE--EEEeecC-----------------CceeEEEECCCCCEEEEEeCC
Q 038577           54 NICRIAVSPDGTFLLTVDENQRCHFINLHCHVV--LHRVRFK-----------------YPVNAILFSPNGKYIAVGTGK  114 (860)
Q Consensus        54 ~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~--~~~~~~~-----------------~~v~~~~fspdg~~la~~~~~  114 (860)
                      .+..+.|+  |+.+++.+.++ | +||+.+++.  ...+.+.                 ..|.+++|||| +.++++.++
T Consensus        27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~~~  101 (706)
T 2z3z_A           27 YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFTQG  101 (706)
T ss_dssp             -CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEETT
T ss_pred             cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEECC
Confidence            35667788  56677777777 8 999999987  3444432                 56999999999 788888889


Q ss_pred             eEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecc-----cccCcccccceEeecCC
Q 038577          115 LVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKE-----KLKGIHTNKPFLLLGHR  189 (860)
Q Consensus       115 ~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~-----~~~~~~~~~~~~~~~h~  189 (860)
                      .|++||+.+++        ...+..+...+.+++|||||++|+++ .|+.|++|++.+     +      ........+.
T Consensus       102 ~i~~~d~~~~~--------~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g------~~~~~~~~~~  166 (706)
T 2z3z_A          102 GLVGFDMLARK--------VTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS------RAIAVTIDGT  166 (706)
T ss_dssp             EEEEEETTTTE--------EEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC------CCEESCSCCB
T ss_pred             EEEEEECCCCc--------eEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC------CcEEeccCCC
Confidence            99999998875        34556677889999999999999985 679999999987     6      2222222222


Q ss_pred             Cc--------------EEEEEEccCCCCCccceEEEEc---------------------------------CCccEEEee
Q 038577          190 DS--------------VVGCFFSVDKKTDKVNRIYTIA---------------------------------RDCYMFSWG  222 (860)
Q Consensus       190 ~~--------------i~~~~~~~~~~~~~~~~l~s~~---------------------------------~dg~i~~w~  222 (860)
                      ..              +.++.|+||++     +|++++                                 .+..|++||
T Consensus       167 ~~~~~g~~~~~ee~~~~~~~~~SpDg~-----~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d  241 (706)
T 2z3z_A          167 ETLVYGQAVHQREFGIEKGTFWSPKGS-----CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYH  241 (706)
T ss_dssp             TTEEESSCCGGGCTTCCCSEEECTTSS-----EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEE
T ss_pred             CCeEcccchhhhhcCCCceEEECCCCC-----EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEE
Confidence            22              47899999999     899887                                 345677777


Q ss_pred             ecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCC-----eEEEEECCCce
Q 038577          223 FSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNG-----VFGLYQMPDFV  297 (860)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g-----~i~~~~~~~~~  297 (860)
                      +.++..                          ........+...+.+++|+|+|+.++++..++     .|.+||+.+++
T Consensus       242 ~~~~~~--------------------------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~  295 (706)
T 2z3z_A          242 LATGKT--------------------------VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR  295 (706)
T ss_dssp             TTTTEE--------------------------EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC
T ss_pred             CCCCce--------------------------EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc
Confidence            765421                          00011123556789999999999999988775     99999999884


Q ss_pred             eEEEEe-ec-Cc---eeEEEEEee--CCCEEEEEEccCCcEEEEEcc-CceEEEEecCcccCeEE-EEEcCCCCEEEEEe
Q 038577          298 CIHLLS-IS-RE---KITTAVFNE--LGNWLVFGCAKLGQLLVWEWR-SESYILKQQGHYFDVNC-LAYSPDSQLLATGA  368 (860)
Q Consensus       298 ~~~~~~-~~-~~---~i~~~~~s~--~~~~l~~~~~~~g~i~v~d~~-~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~  368 (860)
                      ....+. .. ..   .+..++|+|  ||+.++++ ..++.+.+|.+. ++.....+..+...+.. ++|+|+|+.|+.++
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~  374 (706)
T 2z3z_A          296 FVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQS-RRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFES  374 (706)
T ss_dssp             EEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEE-CTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEE
T ss_pred             eeeEEEEccCCCeECccCCceeecCCCCEEEEEE-ccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEe
Confidence            333332 22 21   246789999  99876655 445888999876 56667777777777876 79999999887665


Q ss_pred             CC-C----cEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCC----CcEEEEEccccc
Q 038577          369 DD-N----KVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD----GTVRAWDLFRYR  424 (860)
Q Consensus       369 ~d-g----~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d----g~i~~wd~~~~~  424 (860)
                      .+ +    .|..||..++. ...+. |...+.+++|+|++++++..+.+    +.+.+||+.+++
T Consensus       375 ~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          375 TEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             SSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             cCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            54 3    67777777765 33443 67789999999999988876543    459999998776

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=1.1e-23  Score=218.44  Aligned_cols=287  Identities=11%  Similarity=0.112  Sum_probs=213.5

Q ss_pred             EEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCee-EEEeec
Q 038577          312 AVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGAD-DNKVKVWTVSSGFC-FVTFTE  389 (860)
Q Consensus       312 ~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~-~~~~~~  389 (860)
                      ..|.+++..++++...++.|.+||..+++.......+...+ +++|+|+|+++++++. ++.|.+||..+++. ...+..
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~   81 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE   81 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence            45677788888888888999999999999888777666666 9999999997766665 88999999999987 777776


Q ss_pred             CCCceEEEEEeeCCCEEEEEeCCC---cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCe-EEEEECC
Q 038577          390 HTNAVTALHFMANNHSLLSASLDG---TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFE-IFVWSMK  465 (860)
Q Consensus       390 ~~~~v~~i~~~~~~~~l~s~~~dg---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-i~v~d~~  465 (860)
                      +..+..+++|+|++++++++..++   .|.+||+.+++....+....  ....++++|+|++++++..+.+. +.+|++.
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~  159 (331)
T 3u4y_A           82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY--DAVGIAISPNGNGLILIDRSSANTVRRFKID  159 (331)
T ss_dssp             CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT--TEEEEEECTTSSCEEEEEETTTTEEEEEEEC
T ss_pred             CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC--CccceEECCCCCEEEEEecCCCceEEEEEEC
Confidence            766666699999999999555553   89999999998887776543  46899999999977776655337 9999987


Q ss_pred             CCceE----EEecCcccCeEEEEEcCCCCEEEEEe-CCCcEEEEEccCCcc---eeEEcccCCCeEEEEEeeCCCEEEEE
Q 038577          466 TGRLL----DILSGHEGPVHGLVFSPTNATLASSS-WDKTVRLWNVFEGKG---SVESFPHTHDVLTVVYRPDGRQLACS  537 (860)
Q Consensus       466 ~~~~~----~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~  537 (860)
                      ....+    .....+...+..++|+|+|++++.++ .++.|++||+.+++.   ...+ .....+..++|+|||++++++
T Consensus       160 ~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~  238 (331)
T 3u4y_A          160 ADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAV-GTNNLPGTIVVSRDGSTVYVL  238 (331)
T ss_dssp             TTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEE-ECSSCCCCEEECTTSSEEEEE
T ss_pred             CCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeec-cCCCCCceEEECCCCCEEEEE
Confidence            54332    11223445689999999999665554 689999999998875   3333 345677899999999987766


Q ss_pred             e-CCCeEEEEeCCCCce--eEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEec-CCCeEEEEECCCc
Q 038577          538 T-LDGQIHFWDPLNGEL--MYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGG-SSKYICMYDVADQ  613 (860)
Q Consensus       538 ~-~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~-~dg~v~vwd~~~~  613 (860)
                      + .++.|.+||+.+++.  +..+.........             .......++|+|||++|++++ .++.|.+||+.+.
T Consensus       239 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          239 TESTVDVFNFNQLSGTLSFVKSFGHGLLIDPR-------------PLFGANQMALNKTETKLFISANISRELKVFTISGK  305 (331)
T ss_dssp             CSSEEEEEEEETTTTEEEEEEEEECCCCCCCG-------------GGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred             EcCCCEEEEEECCCCceeeecccccccccCCC-------------CcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence            5 477899999999887  4333322100000             001136689999999886555 5679999999876


Q ss_pred             eE
Q 038577          614 VL  615 (860)
Q Consensus       614 ~~  615 (860)
                      ..
T Consensus       306 ~~  307 (331)
T 3u4y_A          306 VV  307 (331)
T ss_dssp             EE
T ss_pred             cc
Confidence            53

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=6.4e-23  Score=215.05  Aligned_cols=273  Identities=12%  Similarity=0.070  Sum_probs=227.4

Q ss_pred             CceEEEEecCCCCEEEEEEc-------CCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc
Q 038577          265 SKVTACDYHRGLDMVVVGFS-------NGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR  337 (860)
Q Consensus       265 ~~v~~~~~~~~~~~l~~~~~-------~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~  337 (860)
                      ..+..++++|+++.+++++.       ++.|.+||..+++....+.... .+..++|+|+|+.++++...++.|.+||..
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL-KPFGATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS-CCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC-CcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            35789999999999988774       5689999999999888877643 578899999999998888878999999999


Q ss_pred             CceEEEEecCcccC---------eEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEE
Q 038577          338 SESYILKQQGHYFD---------VNCLAYSPDSQLLATGA--DDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSL  406 (860)
Q Consensus       338 ~~~~~~~~~~~~~~---------v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l  406 (860)
                      +++.+..+..+...         +.+++|+|+|+.+++++  .++.|.+||..+++....+..+...+.+++|+|+++.+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  199 (353)
T 3vgz_A          120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRL  199 (353)
T ss_dssp             TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEE
T ss_pred             CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEE
Confidence            99888777654322         68899999999887776  47889999999999998887667778999999999999


Q ss_pred             EEEeCCCcEEEEEccccceeeEeeCC---CCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEE
Q 038577          407 LSASLDGTVRAWDLFRYRNFRTFTTP---SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGL  483 (860)
Q Consensus       407 ~s~~~dg~i~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l  483 (860)
                      ++++.++.+.+||+.+++....+...   ....+..++++|+|++++++..+.+.|.+||..+++.+..+....  ..++
T Consensus       200 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~  277 (353)
T 3vgz_A          200 YTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAV  277 (353)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCE
T ss_pred             EEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceE
Confidence            99999999999999999888777652   234577899999999998888775699999999999988877543  2679


Q ss_pred             EEcCCCCEEEEEe-CCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCC
Q 038577          484 VFSPTNATLASSS-WDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDG  541 (860)
Q Consensus       484 ~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  541 (860)
                      +|+|++++++.++ .++.|.+||..+++....+ .....+.+++|+|||++|+++..++
T Consensus       278 ~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          278 LFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF-DTPTHPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-ECCSEEEEEEECTTSCEEEEEEECC
T ss_pred             EECCCCCEEEEEECCCCeEEEEECCCCeEEEEE-ecCCCCCeEEEcCCCCEEEEEEccc
Confidence            9999999766555 6899999999988754443 4445789999999999888877664

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=5.3e-23  Score=213.38  Aligned_cols=279  Identities=10%  Similarity=0.056  Sum_probs=212.3

Q ss_pred             EecCCCCE-EEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceE-EEEecCc
Q 038577          271 DYHRGLDM-VVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESY-ILKQQGH  348 (860)
Q Consensus       271 ~~~~~~~~-l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~-~~~~~~~  348 (860)
                      .|.++++. +++...++.|.+||..+++....+..+...+ .++|+|+|+.+++++..++.|.+||..+++. ...+..+
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~   82 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG   82 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence            34555555 5677788999999999999988888776677 9999999999998888779999999999887 6666666


Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEE-eCCCc-EEEEEcccc
Q 038577          349 YFDVNCLAYSPDSQLLATGADDN---KVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSA-SLDGT-VRAWDLFRY  423 (860)
Q Consensus       349 ~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~-~~dg~-i~~wd~~~~  423 (860)
                      ..+..+++|+|+|++++++..++   .|.+||+.+++.+..+.. ...+.+++|+|++++++++ ..++. +.+|++...
T Consensus        83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~  161 (331)
T 3u4y_A           83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD  161 (331)
T ss_dssp             SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred             CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence            66665599999999999655553   899999999998887764 4557999999999866554 55588 999998754


Q ss_pred             ceeeE---eeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCce---EEEecCcccCeEEEEEcCCCCEEEEEe-
Q 038577          424 RNFRT---FTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRL---LDILSGHEGPVHGLVFSPTNATLASSS-  496 (860)
Q Consensus       424 ~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~---~~~~~~h~~~v~~l~~s~~~~~l~s~~-  496 (860)
                      .....   ...........++++|+|++++++...++.|.+||+.+++.   +..+.. ...+.+++|+|+|++++.++ 
T Consensus       162 g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~  240 (331)
T 3u4y_A          162 GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTE  240 (331)
T ss_dssp             CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECS
T ss_pred             CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEc
Confidence            33211   11133445789999999998877776555999999999998   777764 46678999999999776655 


Q ss_pred             CCCcEEEEEccCCcc--eeEEccc----C---CCeEEEEEeeCCCEEEEEeC-CCeEEEEeCCCCc
Q 038577          497 WDKTVRLWNVFEGKG--SVESFPH----T---HDVLTVVYRPDGRQLACSTL-DGQIHFWDPLNGE  552 (860)
Q Consensus       497 ~dg~i~iwd~~~~~~--~~~~~~~----~---~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~  552 (860)
                      .++.|.+||+.+++.  ......+    .   .....++|+|||++|++++. ++.|.+||+.+..
T Consensus       241 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          241 STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             CCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence            478899999988764  1111111    1   22356899999998876655 5699999997654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.93  E-value=2.5e-24  Score=248.65  Aligned_cols=329  Identities=10%  Similarity=0.047  Sum_probs=232.0

Q ss_pred             cEEEe-CCCEEEeeeCCeEEEEECCCCcEEeeccCCcc---CeeEEEEcCCCCEEEEEcC---------CCcEEEEEccc
Q 038577           17 NAVLS-QNTKLISPVGNRVSVTDLIKSKTVTLPVESSS---NICRIAVSPDGTFLLTVDE---------NQRCHFINLHC   83 (860)
Q Consensus        17 ~~~~s-dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~---~v~~va~spdg~~la~~~~---------d~~i~vwd~~~   83 (860)
                      .+.|+ ||++++.+.++.|++||+.+++...++.+|..   .+.+++|||||++||+++.         ++.|++||+.+
T Consensus        20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~   99 (719)
T 1z68_A           20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN   99 (719)
T ss_dssp             CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred             ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence            68899 99877777788999999999998877755544   4999999999999999876         68999999999


Q ss_pred             CeEEEEeecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCe-----------------EE
Q 038577           84 HVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKV-----------------TA  146 (860)
Q Consensus        84 ~~~~~~~~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v-----------------~~  146 (860)
                      ++.+........+.+++|||||++||++.++.|++|++.+++..      .....++...|                 .+
T Consensus       100 g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~------~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~  173 (719)
T 1z68_A          100 GEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPF------QITFNGRENKIFNGIPDWVYEEEMLATKYA  173 (719)
T ss_dssp             TEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCE------ECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred             CccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcE------EEecCCCcCCeEcccccceeeeecccCccc
Confidence            98742223346799999999999999999999999999887631      11112332222                 58


Q ss_pred             EEEcCCCCeEEEeecCC----------------------------------eEEEEeecccccCc---ccccceEeecCC
Q 038577          147 LNWSPDSNYLLVGSKDL----------------------------------AVRLFYVKEKLKGI---HTNKPFLLLGHR  189 (860)
Q Consensus       147 l~~s~d~~~l~s~~~dg----------------------------------~v~vwd~~~~~~~~---~~~~~~~~~~h~  189 (860)
                      ++|||||++|++++.|.                                  .|++||+.++ ...   .......+.+|.
T Consensus       174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~-~~~~~~~~~~~~~~~~~~  252 (719)
T 1z68_A          174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP-AYVGPQEVPVPAMIASSD  252 (719)
T ss_dssp             EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH-HHHCCEECCCCHHHHTSC
T ss_pred             EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC-CccceeEccCCccCCCCc
Confidence            99999999999987652                                  7889999877 110   000112245688


Q ss_pred             CcEEEEEEccCCCCCccceEEEEcCC----ccEEEee----ecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccc-
Q 038577          190 DSVVGCFFSVDKKTDKVNRIYTIARD----CYMFSWG----FSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDF-  260 (860)
Q Consensus       190 ~~i~~~~~~~~~~~~~~~~l~s~~~d----g~i~~w~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  260 (860)
                      ..+..++|+||++     .+++....    ..|.+||    ..++..                            ...+ 
T Consensus       253 ~~~~~~~~SpD~~-----~~~~~~~~~~~~~~l~~~d~~~~~~~g~~----------------------------~~~~~  299 (719)
T 1z68_A          253 YYFSWLTWVTDER-----VCLQWLKRVQNVSVLSICDFREDWQTWDC----------------------------PKTQE  299 (719)
T ss_dssp             EEEEEEEESSSSE-----EEEEEEESSTTEEEEEEEEECSSSSSEEC----------------------------CGGGE
T ss_pred             ceEEEeEEeCCCe-----EEEEEeccccCeEEEEEEcccCCCCCCce----------------------------EEEEe
Confidence            8999999999976     66664322    2477888    544322                            1111 


Q ss_pred             ---cCCCCceE-----EEEecCCCCEEEE--EEcCC--eEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEcc-
Q 038577          261 ---SQAPSKVT-----ACDYHRGLDMVVV--GFSNG--VFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK-  327 (860)
Q Consensus       261 ---~~~~~~v~-----~~~~~~~~~~l~~--~~~~g--~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-  327 (860)
                         ..+...+.     .+.|+|+|+.++.  ...+|  .|.+|++.+++ ...+..+...+..+.++ +++.+++.+.. 
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~  377 (719)
T 1z68_A          300 HIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEF  377 (719)
T ss_dssp             EEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCG
T ss_pred             cccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecC
Confidence               12333344     6789999997665  33444  57777876665 44555555567778888 99999888865 


Q ss_pred             ---CCcEEEEEccC--ce-EEEEec----CcccCeEEEEEcCCCCEEEEEe-CC--CcEEEEECCCCeeEEEe
Q 038577          328 ---LGQLLVWEWRS--ES-YILKQQ----GHYFDVNCLAYSPDSQLLATGA-DD--NKVKVWTVSSGFCFVTF  387 (860)
Q Consensus       328 ---~g~i~v~d~~~--~~-~~~~~~----~~~~~v~~~~~s~~~~~l~~~~-~d--g~i~iwd~~~~~~~~~~  387 (860)
                         ++...+|.+..  +. ....+.    +|...+..+.|+|+++.++..+ ..  ..+.+||+.+++....+
T Consensus       378 ~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~  450 (719)
T 1z68_A          378 EEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKIL  450 (719)
T ss_dssp             GGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEE
T ss_pred             CCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEe
Confidence               57888888754  32 123332    2556788899999998777543 32  46888988777655444

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.93  E-value=3.1e-23  Score=215.91  Aligned_cols=277  Identities=11%  Similarity=0.056  Sum_probs=224.4

Q ss_pred             CEEEEEEcCCeEEEEECCCceeEEEEeecCc--eeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecC-c----c
Q 038577          277 DMVVVGFSNGVFGLYQMPDFVCIHLLSISRE--KITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQG-H----Y  349 (860)
Q Consensus       277 ~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~-~----~  349 (860)
                      ++++++..++.|.+||..+++.+..+.....  .+..++|+|+|+.++++...++.|.+||+.+++.+..+.. +    .
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            4688999999999999999998888775543  5789999999999988888779999999999888776643 2    2


Q ss_pred             cCeEEEEEcCCCCEEEEEe------------CCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 038577          350 FDVNCLAYSPDSQLLATGA------------DDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRA  417 (860)
Q Consensus       350 ~~v~~~~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~  417 (860)
                      ..+.+++|+|+|++++++.            .++.|.+||+.+++....+.. ...+.+++|+|++++++++  ++.+.+
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~  158 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV  158 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence            2577899999999998886            579999999999988877764 5567889999999988887  689999


Q ss_pred             EEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCC-----------------------eEEEEECCCCceE-EEe
Q 038577          418 WDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSF-----------------------EIFVWSMKTGRLL-DIL  473 (860)
Q Consensus       418 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~i~v~d~~~~~~~-~~~  473 (860)
                      ||+.+++....+.......  .+.++|++..+++....++                       .|.+||+.+++.. ..+
T Consensus       159 ~d~~~~~~~~~~~~~~~~~--~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~  236 (337)
T 1pby_B          159 MDPEAGTLVEDKPIQSWEA--ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV  236 (337)
T ss_dssp             EETTTTEEEEEECSTTTTT--TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred             EECCCCcEeeeeeccccCC--CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeec
Confidence            9999988877766544111  2267899987776655443                       3689999998875 234


Q ss_pred             cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCce
Q 038577          474 SGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGEL  553 (860)
Q Consensus       474 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  553 (860)
                      ..+...+.+++|+|++++++++  ++.|++||+.+++..... .....+.+++|+|+|++|++++.++.|++||+.+++.
T Consensus       237 ~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~  313 (337)
T 1pby_B          237 RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE-ECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred             CCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCccee-cCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcE
Confidence            4566778899999999999988  799999999888744433 3445678999999999999999999999999999999


Q ss_pred             eEEEeccc
Q 038577          554 MYTIEGRR  561 (860)
Q Consensus       554 ~~~~~~~~  561 (860)
                      +..+..+.
T Consensus       314 ~~~~~~~~  321 (337)
T 1pby_B          314 KGQVDLPG  321 (337)
T ss_dssp             EEEEECGG
T ss_pred             EEEEEcCC
Confidence            88887654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=1.2e-22  Score=213.06  Aligned_cols=271  Identities=12%  Similarity=0.083  Sum_probs=219.0

Q ss_pred             ceeEEEEEeeCCCEEEEEEcc------CCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEE-eCCCcEEEEECC
Q 038577          307 EKITTAVFNELGNWLVFGCAK------LGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATG-ADDNKVKVWTVS  379 (860)
Q Consensus       307 ~~i~~~~~s~~~~~l~~~~~~------~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~  379 (860)
                      ..+..++|+|+|+.+++++..      ++.|.+||..+++....+... ..+..++|+|+|+.++++ ..++.|.+||..
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            457789999999999888854      578999999999888777543 347789999999966554 557999999999


Q ss_pred             CCeeEEEeecCCCc---------eEEEEEeeCCCEEEEEe--CCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCE
Q 038577          380 SGFCFVTFTEHTNA---------VTALHFMANNHSLLSAS--LDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEV  448 (860)
Q Consensus       380 ~~~~~~~~~~~~~~---------v~~i~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (860)
                      +++.+..+..+...         +.+++|+|+++.+++++  .++.|.+||..+++....+... ...+..++++|+|++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~s~dg~~  198 (353)
T 3vgz_A          120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNT-GKMSTGLALDSEGKR  198 (353)
T ss_dssp             TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCC-CTTCCCCEEETTTTE
T ss_pred             CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCC-CCccceEEECCCCCE
Confidence            99988887765432         78999999999877766  4788999999999888777632 224678899999999


Q ss_pred             EEEEecCCCeEEEEECCCCceEEEecC----cccCeEEEEEcCCCCEEEEEeC-CCcEEEEEccCCcceeEEcccCCCeE
Q 038577          449 ICAGTLDSFEIFVWSMKTGRLLDILSG----HEGPVHGLVFSPTNATLASSSW-DKTVRLWNVFEGKGSVESFPHTHDVL  523 (860)
Q Consensus       449 l~~~~~~~~~i~v~d~~~~~~~~~~~~----h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~  523 (860)
                      ++++..++ .+.+||+.+++....+..    +...+.+++|+|+++++++++. ++.|.+||+.+++.........  ..
T Consensus       199 l~~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~  275 (353)
T 3vgz_A          199 LYTTNADG-ELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SL  275 (353)
T ss_dssp             EEEECTTS-EEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CC
T ss_pred             EEEEcCCC-eEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--Cc
Confidence            99998877 999999999998877764    5566889999999998776665 4899999999887555444322  25


Q ss_pred             EEEEeeCCCEEEEEe-CCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCC
Q 038577          524 TVVYRPDGRQLACST-LDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSS  602 (860)
Q Consensus       524 ~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d  602 (860)
                      .++|+|+|+++++++ .++.|.+||+.+++.+..+....                     .+.+++|+|||++|+++..+
T Consensus       276 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---------------------~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          276 AVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---------------------HPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---------------------EEEEEEECTTSCEEEEEEEC
T ss_pred             eEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---------------------CCCeEEEcCCCCEEEEEEcc
Confidence            699999999776665 68999999999999988876654                     37999999999988877665


Q ss_pred             C
Q 038577          603 K  603 (860)
Q Consensus       603 g  603 (860)
                      +
T Consensus       335 ~  335 (353)
T 3vgz_A          335 K  335 (353)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=1.1e-22  Score=212.18  Aligned_cols=273  Identities=10%  Similarity=0.087  Sum_probs=197.4

Q ss_pred             EEEEE-EcCCeEEEEECC-Cc--eeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc--Cce--EEEEecCcc
Q 038577          278 MVVVG-FSNGVFGLYQMP-DF--VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR--SES--YILKQQGHY  349 (860)
Q Consensus       278 ~l~~~-~~~g~i~~~~~~-~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~--~~~--~~~~~~~~~  349 (860)
                      +++++ ..++.|.+|++. ++  +.+.. ..+...+..++|+|+|+.+++++.+++.+.+|++.  ++.  .+..+..+.
T Consensus         6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~   84 (343)
T 1ri6_A            6 TVYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG   84 (343)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EEEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC
Confidence            44444 779999999985 33  23333 33556788999999999999998877999999997  444  333444333


Q ss_pred             cCeEEEEEcCCCCEEEEEeC-CCcEEEEECC---CCeeEEEeecCCCceEEEEEeeCCCEEEEEe-CCCcEEEEEccc-c
Q 038577          350 FDVNCLAYSPDSQLLATGAD-DNKVKVWTVS---SGFCFVTFTEHTNAVTALHFMANNHSLLSAS-LDGTVRAWDLFR-Y  423 (860)
Q Consensus       350 ~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~---~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~i~~wd~~~-~  423 (860)
                       .+..++|+|+++++++++. ++.|.+||+.   .......+. ....+.+++|+|+++++++++ .++.|.+||+.+ +
T Consensus        85 -~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~  162 (343)
T 1ri6_A           85 -SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG  162 (343)
T ss_dssp             -CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             -CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCC
Confidence             7889999999998877665 8889999994   334444444 344688999999999888877 899999999987 5


Q ss_pred             ceee----EeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCC--Cce--EEEec----Cc--ccCeEEEEEcCCC
Q 038577          424 RNFR----TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT--GRL--LDILS----GH--EGPVHGLVFSPTN  489 (860)
Q Consensus       424 ~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~--~~~--~~~~~----~h--~~~v~~l~~s~~~  489 (860)
                      +...    ....+....+..++++|+++++++++...+.+.+|++..  ++.  ...+.    ++  ...+.+++|+|++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg  242 (343)
T 1ri6_A          163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG  242 (343)
T ss_dssp             CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred             ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC
Confidence            4332    334444457788999999998877764444999999953  443  22222    11  2356789999999


Q ss_pred             CEEEEE-eCCCcEEEEEccC--Ccc-eeEEcccCCCeEEEEEeeCCCEEEEEe-CCCeEEEE--eCCCCce
Q 038577          490 ATLASS-SWDKTVRLWNVFE--GKG-SVESFPHTHDVLTVVYRPDGRQLACST-LDGQIHFW--DPLNGEL  553 (860)
Q Consensus       490 ~~l~s~-~~dg~i~iwd~~~--~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw--d~~~~~~  553 (860)
                      ++|+++ ..++.|.+||+..  +.. ..........+..++|+|+|++|++++ .++.|.+|  |..+++.
T Consensus       243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~  313 (343)
T 1ri6_A          243 RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  313 (343)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             CEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCcee
Confidence            987744 4789999999983  221 222222333488999999999998887 57999999  5556643

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=3.7e-22  Score=208.31  Aligned_cols=300  Identities=13%  Similarity=0.088  Sum_probs=208.4

Q ss_pred             CEEE-EEcCCCcEEEEEcc-cC--eEEEEeecCCceeEEEECCCCCEEEEEeC--CeEEEEeCC--CCCcccceeEEEEE
Q 038577           65 TFLL-TVDENQRCHFINLH-CH--VVLHRVRFKYPVNAILFSPNGKYIAVGTG--KLVQIWRSP--GFKKEVFAFELIRT  136 (860)
Q Consensus        65 ~~la-~~~~d~~i~vwd~~-~~--~~~~~~~~~~~v~~~~fspdg~~la~~~~--~~i~iwd~~--~~~~~~~~~~~~~~  136 (860)
                      ++++ +.+.++.|.+||+. ++  +.+..+.+...+.+++|+|+|++|+++..  +.|.+|++.  +++.     ..+..
T Consensus         5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~-----~~~~~   79 (343)
T 1ri6_A            5 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL-----TFAAE   79 (343)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-----EEEEE
T ss_pred             EEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce-----eeccc
Confidence            3444 44779999999995 34  45556668889999999999998888833  899999998  4431     13344


Q ss_pred             eeccCCCeEEEEEcCCCCeEEEeec-CCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEc-C
Q 038577          137 LADCNDKVTALNWSPDSNYLLVGSK-DLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIA-R  214 (860)
Q Consensus       137 ~~~h~~~v~~l~~s~d~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~-~  214 (860)
                      +..+. .+..++|+|++++|++++. ++.|.+||+..+...   .....+. ....+.+++|+|+++     ++++++ .
T Consensus        80 ~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~---~~~~~~~-~~~~~~~~~~s~dg~-----~l~~~~~~  149 (343)
T 1ri6_A           80 SALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV---GVVDVVE-GLDGCHSANISPDNR-----TLWVPALK  149 (343)
T ss_dssp             EECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE---EEEEEEC-CCTTBCCCEECTTSS-----EEEEEEGG
T ss_pred             cccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccc---ccccccc-CCCCceEEEECCCCC-----EEEEecCC
Confidence            44444 7899999999998877665 889999999522000   2233333 344588899999998     788777 8


Q ss_pred             CccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeee-eccccCCCCceEEEEecCCCCEEEEEE-cCCeEEEEE
Q 038577          215 DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLR-KDDFSQAPSKVTACDYHRGLDMVVVGF-SNGVFGLYQ  292 (860)
Q Consensus       215 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~g~i~~~~  292 (860)
                      ++.+.+|++.+...                       ..... ..........+..++|+|++++++++. .++.+.+|+
T Consensus       150 ~~~v~~~d~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~  206 (343)
T 1ri6_A          150 QDRICLFTVSDDGH-----------------------LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWE  206 (343)
T ss_dssp             GTEEEEEEECTTSC-----------------------EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEEecCCCc-----------------------eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence            99999999976211                       00000 011112334688899999999876655 789999999


Q ss_pred             CCC--cee--EEEEee---c---CceeEEEEEeeCCCEEEEEEccCCcEEEEEcc----CceEEEEecCcccCeEEEEEc
Q 038577          293 MPD--FVC--IHLLSI---S---REKITTAVFNELGNWLVFGCAKLGQLLVWEWR----SESYILKQQGHYFDVNCLAYS  358 (860)
Q Consensus       293 ~~~--~~~--~~~~~~---~---~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~----~~~~~~~~~~~~~~v~~~~~s  358 (860)
                      +..  ++.  ......   .   ...+..++|+|+|++++++...++.+.+|++.    ..+.+..+..+.. +.+++|+
T Consensus       207 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s  285 (343)
T 1ri6_A          207 LKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVD  285 (343)
T ss_dssp             SSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEEC
T ss_pred             ecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEEC
Confidence            953  332  222221   1   23566899999999999888777999999998    2344444544444 8899999


Q ss_pred             CCCCEEEEEe-CCCcEEEEEC--CCCee--EEEeecCCCceEEEEEeeCCC
Q 038577          359 PDSQLLATGA-DDNKVKVWTV--SSGFC--FVTFTEHTNAVTALHFMANNH  404 (860)
Q Consensus       359 ~~~~~l~~~~-~dg~i~iwd~--~~~~~--~~~~~~~~~~v~~i~~~~~~~  404 (860)
                      |+|+++++++ .++.|.+|++  .++..  +..+.. .....+++|.++.+
T Consensus       286 ~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~~  335 (343)
T 1ri6_A          286 HSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHEG  335 (343)
T ss_dssp             TTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC-
T ss_pred             CCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEcccC
Confidence            9999888887 5799999954  46543  333433 34566777777543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=5.6e-23  Score=213.94  Aligned_cols=273  Identities=11%  Similarity=0.079  Sum_probs=214.0

Q ss_pred             EEEEEEccCCcEEEEEccCceEEEEecCccc--CeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeeEEEeecC-----C
Q 038577          320 WLVFGCAKLGQLLVWEWRSESYILKQQGHYF--DVNCLAYSPDSQLLA-TGADDNKVKVWTVSSGFCFVTFTEH-----T  391 (860)
Q Consensus       320 ~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~-----~  391 (860)
                      +++++. .++.|.+||..+++.+..+.....  .+..++|+|+|+.++ ++..++.|.+||+.+++.+..+...     .
T Consensus         3 ~~v~~~-~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            3 YILAPA-RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEE-TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             EEEEcC-CCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            344444 459999999999988877753322  478899999998664 5556789999999999888766532     1


Q ss_pred             CceEEEEEeeCCCEEEEEe------------CCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeE
Q 038577          392 NAVTALHFMANNHSLLSAS------------LDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEI  459 (860)
Q Consensus       392 ~~v~~i~~~~~~~~l~s~~------------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i  459 (860)
                      ..+.+++|+|+++++++++            .++.|.+||+.+++....+...  ..+..++++|+|++++++  ++ .|
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~--~~-~i  156 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP--RQITMLAWARDGSKLYGL--GR-DL  156 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC--SSCCCEEECTTSSCEEEE--SS-SE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC--CCcceeEECCCCCEEEEe--CC-eE
Confidence            2577899999999988886            5799999999988887777653  346778899999988888  34 89


Q ss_pred             EEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCC------------------------cEEEEEccCCcce-eE
Q 038577          460 FVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDK------------------------TVRLWNVFEGKGS-VE  514 (860)
Q Consensus       460 ~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg------------------------~i~iwd~~~~~~~-~~  514 (860)
                      ++||+.+++....+..+... ..+.|+|+++.++..+.++                        .|.+||+.+++.. ..
T Consensus       157 ~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  235 (337)
T 1pby_B          157 HVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE  235 (337)
T ss_dssp             EEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred             EEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEee
Confidence            99999999988777654411 1237899998766554332                        4689999988753 22


Q ss_pred             EcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCC
Q 038577          515 SFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGS  594 (860)
Q Consensus       515 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~  594 (860)
                      ...+...+.+++|+|||++++++  ++.|++||+.+++.+..+....                     .+.+++|+|||+
T Consensus       236 ~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---------------------~~~~~~~s~dg~  292 (337)
T 1pby_B          236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---------------------SYYSVNVSTDGS  292 (337)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---------------------CCCEEEECTTSC
T ss_pred             cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---------------------ceeeEEECCCCC
Confidence            23466678899999999999988  7899999999999888776543                     268899999999


Q ss_pred             EEEEecCCCeEEEEECCCceEEEEEeec
Q 038577          595 YILAGGSSKYICMYDVADQVLLRRFQIT  622 (860)
Q Consensus       595 ~l~~~~~dg~v~vwd~~~~~~~~~~~~~  622 (860)
                      +|++++.++.|.+||+.+++.+..+...
T Consensus       293 ~l~~~~~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          293 TVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             EEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             EEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence            9999999999999999999999887654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=1.3e-22  Score=206.94  Aligned_cols=257  Identities=13%  Similarity=0.084  Sum_probs=201.2

Q ss_pred             EcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEeCCeEEEEeCCC-CCcccceeEEEEEeecc-CCCeEEE
Q 038577           70 VDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPG-FKKEVFAFELIRTLADC-NDKVTAL  147 (860)
Q Consensus        70 ~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~h-~~~v~~l  147 (860)
                      .+.++.|++||+.+++......|...|.+++|+|||++|+++.++.|++||+.+ ++.       .....+| ...+.++
T Consensus        18 ~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~-------~~~~~~~~~~~~~~~   90 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSP-------EKVDTGFATICNNDH   90 (297)
T ss_dssp             CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSC-------EECCCTTCCCBCSCC
T ss_pred             CCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCc-------eEeccccccccccce
Confidence            356899999999999988877899999999999999999999999999999998 763       3334455 4678999


Q ss_pred             EEcCCCCeEEEee--cCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEE-EEcCCccEEEeeec
Q 038577          148 NWSPDSNYLLVGS--KDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIY-TIARDCYMFSWGFS  224 (860)
Q Consensus       148 ~~s~d~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~-s~~~dg~i~~w~~~  224 (860)
                      +|+||+++|++++  .++...+|.++.. .    .....+..+. .+..++|+|+++     .++ +++.++.+.+|+++
T Consensus        91 ~~spdg~~l~~~~~~~~~~~~l~~~~~~-~----~~~~~~~~~~-~~~~~~~spdg~-----~l~~~~~~~~~~~l~~~~  159 (297)
T 2ojh_A           91 GISPDGALYAISDKVEFGKSAIYLLPST-G----GTPRLMTKNL-PSYWHGWSPDGK-----SFTYCGIRDQVFDIYSMD  159 (297)
T ss_dssp             EECTTSSEEEEEECTTTSSCEEEEEETT-C----CCCEECCSSS-SEEEEEECTTSS-----EEEEEEEETTEEEEEEEE
T ss_pred             EECCCCCEEEEEEeCCCCcceEEEEECC-C----CceEEeecCC-CccceEECCCCC-----EEEEEECCCCceEEEEEE
Confidence            9999999999998  4456777776543 1    1233344333 488899999998     776 77889999999976


Q ss_pred             CCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEE-cCCeEEEEECC-CceeEEEE
Q 038577          225 GNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGF-SNGVFGLYQMP-DFVCIHLL  302 (860)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~g~i~~~~~~-~~~~~~~~  302 (860)
                      ....                           ....+..+...+.+++|+|+++.+++++ .++.+.+|++. .+.....+
T Consensus       160 ~~~~---------------------------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~  212 (297)
T 2ojh_A          160 IDSG---------------------------VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI  212 (297)
T ss_dssp             TTTC---------------------------CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC
T ss_pred             CCCC---------------------------cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE
Confidence            4321                           0122334556789999999999888776 48889999876 55666777


Q ss_pred             eecCceeEEEEEeeCCCEEEEEEccC----------CcEEEEEccCceE--EEEecCcccCeEEEEEcCCCCEEEEEeCC
Q 038577          303 SISREKITTAVFNELGNWLVFGCAKL----------GQLLVWEWRSESY--ILKQQGHYFDVNCLAYSPDSQLLATGADD  370 (860)
Q Consensus       303 ~~~~~~i~~~~~s~~~~~l~~~~~~~----------g~i~v~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  370 (860)
                      ..+...+..++|+|+|+++++++.+.          +.|.+||+.+++.  +....+|...+.+++|+|+++.|++++.+
T Consensus       213 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          213 TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred             ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence            77778899999999999999887652          5699999988765  33444778889999999999999888765


Q ss_pred             C
Q 038577          371 N  371 (860)
Q Consensus       371 g  371 (860)
                      .
T Consensus       293 ~  293 (297)
T 2ojh_A          293 P  293 (297)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=2.3e-22  Score=204.96  Aligned_cols=251  Identities=16%  Similarity=0.089  Sum_probs=195.8

Q ss_pred             CCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEccc-CeEEEEee-c-CCceeEEEECCCCCE
Q 038577           31 GNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHC-HVVLHRVR-F-KYPVNAILFSPNGKY  107 (860)
Q Consensus        31 ~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~-~~~~~~~~-~-~~~v~~~~fspdg~~  107 (860)
                      ++.|++||+.+++...+. .|...|.+++|||||++|++++ ++.|.+||+.+ ++...... + ...+.+++|+|||++
T Consensus        21 ~~~i~~~d~~~~~~~~~~-~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~   98 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMRVVW-QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGAL   98 (297)
T ss_dssp             CEEEEEEETTTTEEEEEE-EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSE
T ss_pred             ceeEEEEeCCCCceeeec-cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCE
Confidence            467999999999887655 6889999999999999999986 78999999999 87776655 2 467899999999999


Q ss_pred             EEEEe-----CCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEE-EeecCCeEEEEeecccccCccccc
Q 038577          108 IAVGT-----GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLL-VGSKDLAVRLFYVKEKLKGIHTNK  181 (860)
Q Consensus       108 la~~~-----~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~-s~~~dg~v~vwd~~~~~~~~~~~~  181 (860)
                      |+++.     ...|.+|+..++.        ...+..+. .+..++|+||+++|+ +++.++.+++|+++.. .    ..
T Consensus        99 l~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~-~----~~  164 (297)
T 2ojh_A           99 YAISDKVEFGKSAIYLLPSTGGT--------PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID-S----GV  164 (297)
T ss_dssp             EEEEECTTTSSCEEEEEETTCCC--------CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETT-T----CC
T ss_pred             EEEEEeCCCCcceEEEEECCCCc--------eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECC-C----Cc
Confidence            99985     2455556665554        23444443 489999999999887 6778999999998654 1    23


Q ss_pred             ceEeecCCCcEEEEEEccCCCCCccceEEEEc-CCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccc
Q 038577          182 PFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIA-RDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDF  260 (860)
Q Consensus       182 ~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (860)
                      ...+..|...+.++.|+|+++     .++.++ .++.+.+|++.....                           ....+
T Consensus       165 ~~~~~~~~~~~~~~~~s~dg~-----~l~~~~~~~~~~~i~~~~~~~~---------------------------~~~~~  212 (297)
T 2ojh_A          165 ETRLTHGEGRNDGPDYSPDGR-----WIYFNSSRTGQMQIWRVRVDGS---------------------------SVERI  212 (297)
T ss_dssp             EEECCCSSSCEEEEEECTTSS-----EEEEEECTTSSCEEEEEETTSS---------------------------CEEEC
T ss_pred             ceEcccCCCccccceECCCCC-----EEEEEecCCCCccEEEECCCCC---------------------------CcEEE
Confidence            456677888999999999998     777666 589999999873211                           01223


Q ss_pred             cCCCCceEEEEecCCCCEEEEEEcC-----------CeEEEEECCCceeE--EEEeecCceeEEEEEeeCCCEEEEEEcc
Q 038577          261 SQAPSKVTACDYHRGLDMVVVGFSN-----------GVFGLYQMPDFVCI--HLLSISREKITTAVFNELGNWLVFGCAK  327 (860)
Q Consensus       261 ~~~~~~v~~~~~~~~~~~l~~~~~~-----------g~i~~~~~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~~  327 (860)
                      ..+...+.+++|+|++++|++++.+           +.|.+||+.+++..  ..+..+...+..++|+|+|+.+++++.+
T Consensus       213 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          213 TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred             ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence            3445678899999999999988766           56999999887654  3444677789999999999999998876


Q ss_pred             CC
Q 038577          328 LG  329 (860)
Q Consensus       328 ~g  329 (860)
                      ++
T Consensus       293 ~~  294 (297)
T 2ojh_A          293 PV  294 (297)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.91  E-value=7.2e-22  Score=227.53  Aligned_cols=365  Identities=11%  Similarity=0.079  Sum_probs=242.9

Q ss_pred             CcEEEe-CCCEEEeeeCCeEEEEECCCCcEEeeccCCccC---e--eEEEEcCCCCEEEEEcCC---------CcEEEEE
Q 038577           16 GNAVLS-QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSN---I--CRIAVSPDGTFLLTVDEN---------QRCHFIN   80 (860)
Q Consensus        16 ~~~~~s-dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~---v--~~va~spdg~~la~~~~d---------~~i~vwd   80 (860)
                      -++.|+ ||++++++ ++.|++||+.+++...++.+|...   +  ..++|||||++||+++.+         +.+.+||
T Consensus        20 ~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d   98 (740)
T 4a5s_A           20 YSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (740)
T ss_dssp             CCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             cccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEE
Confidence            369999 99988887 899999999999988777777643   2  348899999999998765         5677999


Q ss_pred             cccCeEEEEeecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCe----------------
Q 038577           81 LHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKV----------------  144 (860)
Q Consensus        81 ~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v----------------  144 (860)
                      +.+++......+...+..++|||||+.||.+.++.|++|+..+++..      ..+..++...+                
T Consensus        99 ~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~------~lt~~g~~~~~~~g~~~~v~~ee~~~~  172 (740)
T 4a5s_A           99 LNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSY------RITWTGKEDIIYNGITDWVYEEEVFSA  172 (740)
T ss_dssp             TTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCE------ECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             CCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceE------EEcCCCCccceecCcccccccchhcCC
Confidence            99998765444778899999999999999999999999999887631      11122332222                


Q ss_pred             -EEEEEcCCCCeEEEeecCC-eEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEee
Q 038577          145 -TALNWSPDSNYLLVGSKDL-AVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWG  222 (860)
Q Consensus       145 -~~l~~s~d~~~l~s~~~dg-~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~  222 (860)
                       ..+.|||||++||.++.|. .+.+|++... ..     ..   ++...+..+.|.+.|.     .    .....+++||
T Consensus       173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~-~~-----~~---~~~~~~~~~~yp~~G~-----~----~~~~~l~v~d  234 (740)
T 4a5s_A          173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFY-SD-----ES---LQYPKTVRVPYPKAGA-----V----NPTVKFFVVN  234 (740)
T ss_dssp             SBCEEECTTSSEEEEEEEECTTCCEEEEEEC-CS-----TT---CSSCEEEEEECCBTTS-----C----CCEEEEEEEE
T ss_pred             CcceEECCCCCEEEEEEEcccCCceEEEEee-cC-----CC---CCCCcceeecCCCCcC-----c----CCeeEEEEEE
Confidence             3589999999999987654 4899988654 11     10   3555667778877775     2    2234788999


Q ss_pred             ecC---CCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcC----CeEEEEECCC
Q 038577          223 FSG---NDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSN----GVFGLYQMPD  295 (860)
Q Consensus       223 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~----g~i~~~~~~~  295 (860)
                      +.+   +...                    ....+.....+.++...+..++|+|||+.++.....    ..|.+||+.+
T Consensus       235 ~~~~~~~~~~--------------------~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t  294 (740)
T 4a5s_A          235 TDSLSSVTNA--------------------TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE  294 (740)
T ss_dssp             TTSCCSSSCC--------------------CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred             CCCCCCCCcc--------------------eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence            887   4210                    011111111122356678999999999977765443    3799999988


Q ss_pred             ce----eE--EEE--eecCcee-----EEEEEeeCCCEEE-EEEccCC--cEEEEEccCceEEEEecCcccCeEEEEEcC
Q 038577          296 FV----CI--HLL--SISREKI-----TTAVFNELGNWLV-FGCAKLG--QLLVWEWRSESYILKQQGHYFDVNCLAYSP  359 (860)
Q Consensus       296 ~~----~~--~~~--~~~~~~i-----~~~~~s~~~~~l~-~~~~~~g--~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~  359 (860)
                      ++    +.  ..+  ..+...+     ....|+|||+.++ ..+..+|  .|++||..++.... +......+..+.. +
T Consensus       295 g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~~v~~~~~-~  372 (740)
T 4a5s_A          295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKGTWEVIGIEA-L  372 (740)
T ss_dssp             TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCSSSCEEEEEE-E
T ss_pred             CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-cccCCEEEEEEEE-E
Confidence            76    22  111  2343333     3788999999988 6655544  57788887765543 3333445655542 3


Q ss_pred             CCCEEEEEeCC-----C--cEEEEECCCCeeEEEeec----CCCceEEEEEeeCCCEEEEEeCC---CcEEEEEccccce
Q 038577          360 DSQLLATGADD-----N--KVKVWTVSSGFCFVTFTE----HTNAVTALHFMANNHSLLSASLD---GTVRAWDLFRYRN  425 (860)
Q Consensus       360 ~~~~l~~~~~d-----g--~i~iwd~~~~~~~~~~~~----~~~~v~~i~~~~~~~~l~s~~~d---g~i~~wd~~~~~~  425 (860)
                      +++.++..+..     +  .|...++..+.....+..    .......+.|+|++++++.....   ..+.+++..+++.
T Consensus       373 d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~  452 (740)
T 4a5s_A          373 TSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKG  452 (740)
T ss_dssp             CSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEE
T ss_pred             eCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcE
Confidence            46655544432     3  344445544433323432    23578899999999877655433   2466666655544


Q ss_pred             ee
Q 038577          426 FR  427 (860)
Q Consensus       426 ~~  427 (860)
                      .+
T Consensus       453 ~~  454 (740)
T 4a5s_A          453 LR  454 (740)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.90  E-value=1.2e-22  Score=234.52  Aligned_cols=364  Identities=10%  Similarity=0.032  Sum_probs=241.0

Q ss_pred             eEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCC----ceeEEEECCCCCEEEEEe----------CCeEEEEeC
Q 038577           56 CRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKY----PVNAILFSPNGKYIAVGT----------GKLVQIWRS  121 (860)
Q Consensus        56 ~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~----~v~~~~fspdg~~la~~~----------~~~i~iwd~  121 (860)
                      ..++|+|||+++++ +.|++|++||+.+++....+.+..    .+.+++|||||++||++.          ++.|++||+
T Consensus        19 ~~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           19 FFPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             CccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            47899999976555 468999999999999887776432    499999999999999883          489999999


Q ss_pred             CCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCccc----ccceEeecCCCcE-----
Q 038577          122 PGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHT----NKPFLLLGHRDSV-----  192 (860)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~----~~~~~~~~h~~~i-----  192 (860)
                      .+++... .    ..+   ...+..++|||||+.||++. ++.|++|++.++ .....    .....+.+|...+     
T Consensus        98 ~~g~~~~-~----~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g-~~~~l~~~~~~~~v~~g~~~~v~~ee~  167 (719)
T 1z68_A           98 SNGEFVR-G----NEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGD-PPFQITFNGRENKIFNGIPDWVYEEEM  167 (719)
T ss_dssp             TTTEECC-S----SCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTS-CCEECCCCCBTTTEEESSCCHHHHHHT
T ss_pred             CCCcccc-c----eec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCC-CcEEEecCCCcCCeEcccccceeeeec
Confidence            9875200 0    111   25688999999999999986 789999999876 11000    0001112222222     


Q ss_pred             ----EEEEEccCCCCCccceEEEEcCC-ccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCce
Q 038577          193 ----VGCFFSVDKKTDKVNRIYTIARD-CYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKV  267 (860)
Q Consensus       193 ----~~~~~~~~~~~~~~~~l~s~~~d-g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  267 (860)
                          .+++|+|||+     +|++++.| +.+.+|.+.....                                 .....+
T Consensus       168 ~~~~~~~~wSPDG~-----~la~~~~d~~~~~~~~~~~~~~---------------------------------~~~~~~  209 (719)
T 1z68_A          168 LATKYALWWSPNGK-----FLAYAEFNDTDIPVIAYSYYGD---------------------------------EQYPRT  209 (719)
T ss_dssp             TCSSCCEEECTTSS-----EEEEEEEECTTSCEEEEEECCS---------------------------------SSSCEE
T ss_pred             ccCcccEEECCCCC-----EEEEEEECCCCCceEEeeccCC---------------------------------CCCccc
Confidence                4899999999     89988765 4455554432110                                 112234


Q ss_pred             EEEEecCCCCEEEEEEcCCeEEEEECCCceeE--EE------EeecCceeEEEEEeeCCCEEEEEEccC---CcEEEEE-
Q 038577          268 TACDYHRGLDMVVVGFSNGVFGLYQMPDFVCI--HL------LSISREKITTAVFNELGNWLVFGCAKL---GQLLVWE-  335 (860)
Q Consensus       268 ~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~--~~------~~~~~~~i~~~~~s~~~~~l~~~~~~~---g~i~v~d-  335 (860)
                      ..+.+.+.|..    .....|++||+.+++..  ..      +..+...+..++|+||++.+++.....   ..|.+|| 
T Consensus       210 ~~~~yp~~g~~----~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~  285 (719)
T 1z68_A          210 INIPYPKAGAK----NPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDF  285 (719)
T ss_dssp             EEEECCBTTSC----CCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEE
T ss_pred             eeecCCCCCCC----CCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcc
Confidence            44555444431    12347899999887653  11      223566789999999977655543321   2488899 


Q ss_pred             ---ccCceEEEEe----cCcccCeE-----EEEEcCCCCEEEE--EeCCC--cEEEEECCCCeeEEEeecCCCceEEEEE
Q 038577          336 ---WRSESYILKQ----QGHYFDVN-----CLAYSPDSQLLAT--GADDN--KVKVWTVSSGFCFVTFTEHTNAVTALHF  399 (860)
Q Consensus       336 ---~~~~~~~~~~----~~~~~~v~-----~~~~s~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~  399 (860)
                         ..+++.....    ..|...+.     .++|+|||+.++.  ...+|  .|.+|++.++. ...+..+...+..+.+
T Consensus       286 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~  364 (719)
T 1z68_A          286 REDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFR  364 (719)
T ss_dssp             CSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEE
T ss_pred             cCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEE
Confidence               7777654433    35666666     7899999996654  44555  57777877666 4456666667888887


Q ss_pred             eeCCCEEEEEeCC-----CcEEEEEccc--cc-eeeEeeCC---CCCcEEEEEECCCCCEEEEEecC--CCeEEEEECCC
Q 038577          400 MANNHSLLSASLD-----GTVRAWDLFR--YR-NFRTFTTP---SSRQFVSLASDQSGEVICAGTLD--SFEIFVWSMKT  466 (860)
Q Consensus       400 ~~~~~~l~s~~~d-----g~i~~wd~~~--~~-~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~--~~~i~v~d~~~  466 (860)
                      + +++.++..+.+     +..++|.+..  +. ....+...   +...+..+.|+|++++++....+  ...+++||+.+
T Consensus       365 ~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~  443 (719)
T 1z68_A          365 V-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRT  443 (719)
T ss_dssp             E-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSS
T ss_pred             E-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCC
Confidence            7 88777766654     7888998764  32 12333221   33456788999999887764332  13788999888


Q ss_pred             CceEEEec
Q 038577          467 GRLLDILS  474 (860)
Q Consensus       467 ~~~~~~~~  474 (860)
                      ++....+.
T Consensus       444 g~~~~~~~  451 (719)
T 1z68_A          444 DQEIKILE  451 (719)
T ss_dssp             CCEEEEEE
T ss_pred             CCEEEEee
Confidence            87655443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.90  E-value=1.1e-20  Score=197.25  Aligned_cols=270  Identities=11%  Similarity=0.034  Sum_probs=190.4

Q ss_pred             CCeEEEEEC--CCceeEE-EEeecCceeEEEEEeeCCCEEEEEEcc--CCcEEEEEccCce--EEEEecCcccCeEEEEE
Q 038577          285 NGVFGLYQM--PDFVCIH-LLSISREKITTAVFNELGNWLVFGCAK--LGQLLVWEWRSES--YILKQQGHYFDVNCLAY  357 (860)
Q Consensus       285 ~g~i~~~~~--~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~~--~g~i~v~d~~~~~--~~~~~~~~~~~v~~~~~  357 (860)
                      ++.|.+|.+  .+++... ....+...+..++|+|+|+ +++++..  ++.|.+|++.++.  .+.....+...+..++|
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~   93 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV   93 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence            345666655  4455433 2333456778899999999 6665542  5899999998765  33444456777899999


Q ss_pred             cCCCCEEEEEe-CCCcEEEEECCC-C--eeEEEeec---------CCCceEEEEEeeCCCEEEEEeCCCcEEEEEcc-cc
Q 038577          358 SPDSQLLATGA-DDNKVKVWTVSS-G--FCFVTFTE---------HTNAVTALHFMANNHSLLSASLDGTVRAWDLF-RY  423 (860)
Q Consensus       358 s~~~~~l~~~~-~dg~i~iwd~~~-~--~~~~~~~~---------~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~-~~  423 (860)
                      +|+|++|++++ .++.|.+|++.. +  ..+..+..         +...+.+++|+|+++.+++...++.|.+|++. ++
T Consensus        94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g  173 (347)
T 3hfq_A           94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG  173 (347)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred             CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence            99999888887 678999999963 3  22333321         12248899999999966666678899999998 44


Q ss_pred             cee--eEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCC--Cce--EEEecCcc------cCeEEEEEcCCCCE
Q 038577          424 RNF--RTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT--GRL--LDILSGHE------GPVHGLVFSPTNAT  491 (860)
Q Consensus       424 ~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~--~~~--~~~~~~h~------~~v~~l~~s~~~~~  491 (860)
                      +..  ..+.......+..++|+|+|++++++...++.+.+|++..  ++.  +..+....      ..+..++|+|||++
T Consensus       174 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~  253 (347)
T 3hfq_A          174 QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHF  253 (347)
T ss_dssp             CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCE
T ss_pred             cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCE
Confidence            322  2233444446788999999998888766555999999874  543  22333222      34889999999998


Q ss_pred             E-EEEeCCCcEEEEEccCC---cceeEEcccCCCeEEEEEeeCCCEEEEEeCC-CeEEEE--eCCCCceeE
Q 038577          492 L-ASSSWDKTVRLWNVFEG---KGSVESFPHTHDVLTVVYRPDGRQLACSTLD-GQIHFW--DPLNGELMY  555 (860)
Q Consensus       492 l-~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iw--d~~~~~~~~  555 (860)
                      | ++...++.|.+|++...   +.......+...+..++|+|||++|++++.+ +.|.+|  |..+|+...
T Consensus       254 l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          254 LYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             EEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             EEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence            7 55566899999999732   2223333455678999999999999888765 899999  666776653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.90  E-value=1.7e-20  Score=216.19  Aligned_cols=365  Identities=11%  Similarity=0.076  Sum_probs=243.1

Q ss_pred             ccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee-cCC-----ceeEEEECCCCCEEEEEeC----------Ce
Q 038577           52 SSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-FKY-----PVNAILFSPNGKYIAVGTG----------KL  115 (860)
Q Consensus        52 ~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~-~~~-----~v~~~~fspdg~~la~~~~----------~~  115 (860)
                      .....+++|+|||++++++  |++|++||+.+++....+. +..     ...+++|||||++|+++.+          +.
T Consensus        16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~   93 (740)
T 4a5s_A           16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS   93 (740)
T ss_dssp             CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             cccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence            3456789999999999986  8999999999999877766 322     2244899999999999844          67


Q ss_pred             EEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcE---
Q 038577          116 VQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSV---  192 (860)
Q Consensus       116 i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i---  192 (860)
                      +.+||+.+++        ...+..|.+.+..++|||||+.||.+. ++.|.+|++.++ ..    ...+..++...+   
T Consensus        94 ~~~~d~~~~~--------~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~-~~----~~lt~~g~~~~~~~g  159 (740)
T 4a5s_A           94 YDIYDLNKRQ--------LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNL-PS----YRITWTGKEDIIYNG  159 (740)
T ss_dssp             EEEEETTTTE--------ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTS-CC----EECCSCCBTTTEEES
T ss_pred             EEEEECCCCc--------EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCC-ce----EEEcCCCCccceecC
Confidence            8899999986        345777888999999999999999884 689999999876 11    111122332222   


Q ss_pred             --------------EEEEEccCCCCCccceEEEEcCCcc-EEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeee
Q 038577          193 --------------VGCFFSVDKKTDKVNRIYTIARDCY-MFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRK  257 (860)
Q Consensus       193 --------------~~~~~~~~~~~~~~~~l~s~~~dg~-i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (860)
                                    ..+.|||||+     +|+..+.|.+ +.+|++.....                             
T Consensus       160 ~~~~v~~ee~~~~~~~~~wSpDg~-----~la~~~~d~~~v~~~~~~~~~~-----------------------------  205 (740)
T 4a5s_A          160 ITDWVYEEEVFSAYSALWWSPNGT-----FLAYAQFNDTEVPLIEYSFYSD-----------------------------  205 (740)
T ss_dssp             BCCHHHHHHTSSSSBCEEECTTSS-----EEEEEEEECTTCCEEEEEECCS-----------------------------
T ss_pred             cccccccchhcCCCcceEECCCCC-----EEEEEEEcccCCceEEEEeecC-----------------------------
Confidence                          3489999999     8988876654 77777653211                             


Q ss_pred             ccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCC---ce--eEEEEee------cCceeEEEEEeeCCCEEEEEEc
Q 038577          258 DDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPD---FV--CIHLLSI------SREKITTAVFNELGNWLVFGCA  326 (860)
Q Consensus       258 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~---~~--~~~~~~~------~~~~i~~~~~s~~~~~l~~~~~  326 (860)
                        ...+...+..+.+.+.|..    .....|.+||+.+   ++  ....+..      +...+..++|+|||+.++....
T Consensus       206 --~~~~~~~~~~~~yp~~G~~----~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~  279 (740)
T 4a5s_A          206 --ESLQYPKTVRVPYPKAGAV----NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLR  279 (740)
T ss_dssp             --TTCSSCEEEEEECCBTTSC----CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEE
T ss_pred             --CCCCCCcceeecCCCCcCc----CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeC
Confidence              0012234566666666643    1223689999988   73  2333332      5667899999999997776654


Q ss_pred             cC---CcEEEEEccCce----EE--EEe--cCcccCeE-----EEEEcCCCCEEE-EEeC-C--CcEEEEECCCCeeEEE
Q 038577          327 KL---GQLLVWEWRSES----YI--LKQ--QGHYFDVN-----CLAYSPDSQLLA-TGAD-D--NKVKVWTVSSGFCFVT  386 (860)
Q Consensus       327 ~~---g~i~v~d~~~~~----~~--~~~--~~~~~~v~-----~~~~s~~~~~l~-~~~~-d--g~i~iwd~~~~~~~~~  386 (860)
                      ..   ..|.+||+.+++    +.  ..+  ..|...+.     ..+|+|||+.++ ..+. +  ..|++||..++... .
T Consensus       280 r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~  358 (740)
T 4a5s_A          280 RIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-F  358 (740)
T ss_dssp             SSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-E
T ss_pred             CCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-e
Confidence            32   369999998876    11  111  34544443     788999999877 6653 3  36888898766555 3


Q ss_pred             eecCCCceEEEEEeeCCCEEEEEeCC-----CcEEEEE--ccccceeeEeeCC---CCCcEEEEEECCCCCEEEEEecC-
Q 038577          387 FTEHTNAVTALHFMANNHSLLSASLD-----GTVRAWD--LFRYRNFRTFTTP---SSRQFVSLASDQSGEVICAGTLD-  455 (860)
Q Consensus       387 ~~~~~~~v~~i~~~~~~~~l~s~~~d-----g~i~~wd--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~-  455 (860)
                      +......+..+.. ++++.++..+..     +...+|.  +..+.....+...   .........++|++++++..... 
T Consensus       359 lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~  437 (740)
T 4a5s_A          359 ITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGP  437 (740)
T ss_dssp             SCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSB
T ss_pred             cccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCC
Confidence            4444556666543 446655544432     3445554  4433332233322   23467889999999988766544 


Q ss_pred             -CCeEEEEECCCCceEEEec
Q 038577          456 -SFEIFVWSMKTGRLLDILS  474 (860)
Q Consensus       456 -~~~i~v~d~~~~~~~~~~~  474 (860)
                       ...+.+++..+++....+.
T Consensus       438 ~~p~~~l~~~~~~~~~~~l~  457 (740)
T 4a5s_A          438 GLPLYTLHSSVNDKGLRVLE  457 (740)
T ss_dssp             SSCEEEEEETTTTEEEEEEE
T ss_pred             CCCEEEEEECCCCcEEEEec
Confidence             2367788877776555443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.89  E-value=7.5e-21  Score=198.87  Aligned_cols=272  Identities=11%  Similarity=0.116  Sum_probs=201.3

Q ss_pred             EEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcc-cCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeeEEEeec
Q 038577          312 AVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHY-FDVNCLAYSPDSQLLA-TGADDNKVKVWTVSSGFCFVTFTE  389 (860)
Q Consensus       312 ~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~  389 (860)
                      +++++++..+++++. ++.|.+||..+++.+..+..+. ..+..++|+|+|+.++ ++..++.|.+||+.+++....+..
T Consensus         5 ~~~~~~~~~~v~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            5 PALKAGHEYMIVTNY-PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCTTCEEEEEEET-TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             ccccCCCEEEEEeCC-CCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            456666666666655 4999999999998887775443 2578899999998665 455689999999999988877754


Q ss_pred             CC------CceEEEEEeeCCCEEEEEeCC------------CcEEEEEccccce---eeEeeCCCCCcEEEEEECCCCCE
Q 038577          390 HT------NAVTALHFMANNHSLLSASLD------------GTVRAWDLFRYRN---FRTFTTPSSRQFVSLASDQSGEV  448 (860)
Q Consensus       390 ~~------~~v~~i~~~~~~~~l~s~~~d------------g~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  448 (860)
                      +.      ..+.+++|+|+++++++++.+            +.|.+||+.+++.   ...+..+  ..+.+++++|+|+ 
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~-  160 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP--RQVYLMRAADDGS-  160 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC--SSCCCEEECTTSC-
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC--CcccceeECCCCc-
Confidence            32      237889999999999988865            8999999988543   3333333  2577889999999 


Q ss_pred             EEEEecCCCeEEEEECCCCceEEEecCccc------------------------CeEEEEEcCCCCE-----------EE
Q 038577          449 ICAGTLDSFEIFVWSMKTGRLLDILSGHEG------------------------PVHGLVFSPTNAT-----------LA  493 (860)
Q Consensus       449 l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~------------------------~v~~l~~s~~~~~-----------l~  493 (860)
                      +++++  + .|++||+.+++.+..+..+..                        ....+++++++..           +.
T Consensus       161 l~~~~--~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  237 (349)
T 1jmx_B          161 LYVAG--P-DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS  237 (349)
T ss_dssp             EEEES--S-SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEE
T ss_pred             EEEcc--C-cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEE
Confidence            55543  2 599999999998877754320                        3445677665421           11


Q ss_pred             EEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEee-CCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCcccccc
Q 038577          494 SSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRP-DGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDR  572 (860)
Q Consensus       494 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  572 (860)
                      ....++.+++|++.         .+...+..++|+| ++++++++  ++.|.+||+.+++.+..+.....          
T Consensus       238 ~~~~~~~~~~~~~~---------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~----------  296 (349)
T 1jmx_B          238 VDLKTGKTHTQEFA---------DLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHT----------  296 (349)
T ss_dssp             EETTTCCEEEEEEE---------ECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSC----------
T ss_pred             EeccCCcEEecccc---------cCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCC----------
Confidence            22233444444442         2556788999999 99999988  88999999999998887764432          


Q ss_pred             ccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeec
Q 038577          573 RSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQIT  622 (860)
Q Consensus       573 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~  622 (860)
                                 +.+++|+|||++|++++.++.|.+||+.+++.+..++.+
T Consensus       297 -----------~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          297 -----------YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             -----------CCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             -----------ccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence                       678999999999998888999999999999999887653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.89  E-value=2e-20  Score=195.22  Aligned_cols=266  Identities=12%  Similarity=0.102  Sum_probs=184.3

Q ss_pred             CcEEEEEcc--CceEEE-EecCcccCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCe--eEEEeecCCCceEEEEEe
Q 038577          329 GQLLVWEWR--SESYIL-KQQGHYFDVNCLAYSPDSQLLATGAD---DNKVKVWTVSSGF--CFVTFTEHTNAVTALHFM  400 (860)
Q Consensus       329 g~i~v~d~~--~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~  400 (860)
                      +.+.+|++.  +++... ....+...+..++|+|+|+ +++++.   ++.|++|++.++.  .+..+..+...+..++|+
T Consensus        16 ~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~s   94 (347)
T 3hfq_A           16 QGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVD   94 (347)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEE
T ss_pred             CCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEEC
Confidence            567777654  455433 2234556678899999999 555544   6899999997765  444545677888999999


Q ss_pred             eCCCEEEEEe-CCCcEEEEEccc---cceeeEeeCCC--------CCcEEEEEECCCCCEEEEEecCCCeEEEEECC-CC
Q 038577          401 ANNHSLLSAS-LDGTVRAWDLFR---YRNFRTFTTPS--------SRQFVSLASDQSGEVICAGTLDSFEIFVWSMK-TG  467 (860)
Q Consensus       401 ~~~~~l~s~~-~dg~i~~wd~~~---~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~-~~  467 (860)
                      |++++|++++ .++.+.+|++..   .+.+..+....        ...+.+++++|+|+ ++++....+.|++|++. ++
T Consensus        95 pdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g  173 (347)
T 3hfq_A           95 EARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAG  173 (347)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTS
T ss_pred             CCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCC
Confidence            9999888887 678999999963   22333333221        22478899999999 55555444499999998 55


Q ss_pred             ceEE--EecCc-ccCeEEEEEcCCCCEEEE-EeCCCcEEEEEccC--Ccce--eEEcccC------CCeEEEEEeeCCCE
Q 038577          468 RLLD--ILSGH-EGPVHGLVFSPTNATLAS-SSWDKTVRLWNVFE--GKGS--VESFPHT------HDVLTVVYRPDGRQ  533 (860)
Q Consensus       468 ~~~~--~~~~h-~~~v~~l~~s~~~~~l~s-~~~dg~i~iwd~~~--~~~~--~~~~~~~------~~v~~~~~s~~~~~  533 (860)
                      +...  .+..+ ...+..++|+|||+++++ ...++.|.+|++..  ++..  .......      ..+..++|+|||++
T Consensus       174 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~  253 (347)
T 3hfq_A          174 QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHF  253 (347)
T ss_dssp             CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCE
T ss_pred             cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCE
Confidence            5432  22222 336788999999997665 45688999999875  3311  1111222      45889999999998


Q ss_pred             EE-EEeCCCeEEEEeCCCC---ceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecC-CCeEEEE
Q 038577          534 LA-CSTLDGQIHFWDPLNG---ELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGS-SKYICMY  608 (860)
Q Consensus       534 l~-~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~v~vw  608 (860)
                      |+ +...++.|.+|++...   +.+..+..+.                    ..+..++|+|||++|++++. ++.|.+|
T Consensus       254 l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~--------------------~~~~~~~~spdg~~l~v~~~~~~~v~v~  313 (347)
T 3hfq_A          254 LYVSNRGYNTLAVFAVTADGHLTLIQQISTEG--------------------DFPRDFDLDPTEAFVVVVNQNTDNATLY  313 (347)
T ss_dssp             EEEEEETTTEEEEEEECGGGCEEEEEEEECSS--------------------SCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEEEeCCCCEEEEEEECCCCcEEEeEEEecCC--------------------CCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence            85 4556899999998732   3333343322                    23689999999999888775 4899999


Q ss_pred             --ECCCceEE
Q 038577          609 --DVADQVLL  616 (860)
Q Consensus       609 --d~~~~~~~  616 (860)
                        |..+|++.
T Consensus       314 ~~d~~tg~l~  323 (347)
T 3hfq_A          314 ARDLTSGKLS  323 (347)
T ss_dssp             EECTTTCCEE
T ss_pred             EEeCCCCeEE
Confidence              55667655

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.89  E-value=7.1e-21  Score=199.06  Aligned_cols=284  Identities=11%  Similarity=0.056  Sum_probs=208.4

Q ss_pred             EEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecC-ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCc
Q 038577          270 CDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISR-EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGH  348 (860)
Q Consensus       270 ~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~  348 (860)
                      +++++++..+++++.++.|.+||..+++....+..+. ..+..++|+|+|+.++++...++.|.+||+.+++....+..+
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~   84 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   84 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc
Confidence            4567888899999999999999999999888877554 257899999999988888777799999999999887766532


Q ss_pred             ------ccCeEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCee---EEEeecCCCceEEEEEeeCCCEEE
Q 038577          349 ------YFDVNCLAYSPDSQLLATGADD------------NKVKVWTVSSGFC---FVTFTEHTNAVTALHFMANNHSLL  407 (860)
Q Consensus       349 ------~~~v~~~~~s~~~~~l~~~~~d------------g~i~iwd~~~~~~---~~~~~~~~~~v~~i~~~~~~~~l~  407 (860)
                            ...+.+++|+|+|+++++++.+            +.|.+||+.+++.   +..+. +...+.+++|+|+++ ++
T Consensus        85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~  162 (349)
T 1jmx_B           85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LY  162 (349)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EE
T ss_pred             cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EE
Confidence                  2337889999999999998865            8999999987433   33333 444688999999999 66


Q ss_pred             EEeCCCcEEEEEccccceeeEeeCCCCC-----------------------cEEEEEECCCCCEEEEEecCCCeEEEEEC
Q 038577          408 SASLDGTVRAWDLFRYRNFRTFTTPSSR-----------------------QFVSLASDQSGEVICAGTLDSFEIFVWSM  464 (860)
Q Consensus       408 s~~~dg~i~~wd~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~l~~~~~~~~~i~v~d~  464 (860)
                      +++.  .|.+||+.+++....+......                       ....+++++++............+..+|.
T Consensus       163 ~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  240 (349)
T 1jmx_B          163 VAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL  240 (349)
T ss_dssp             EESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred             EccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEec
Confidence            6544  4999999998877766543200                       23446666554322111111112233555


Q ss_pred             CCCceE-EEecCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCe
Q 038577          465 KTGRLL-DILSGHEGPVHGLVFSP-TNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQ  542 (860)
Q Consensus       465 ~~~~~~-~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  542 (860)
                      .+++.. ..+..+...+.+++|+| ++++++++  ++.|.+||+.+++...... ....+.+++|+|+|++|++++.++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~  317 (349)
T 1jmx_B          241 KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFND  317 (349)
T ss_dssp             TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSE
T ss_pred             cCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc-CCCCccceEECCCCCEEEEecCCCe
Confidence            555432 12233566788999999 99999888  8899999999887444433 4455789999999999999888999


Q ss_pred             EEEEeCCCCceeEEEecc
Q 038577          543 IHFWDPLNGELMYTIEGR  560 (860)
Q Consensus       543 i~iwd~~~~~~~~~~~~~  560 (860)
                      |++||+.+++.+..++..
T Consensus       318 v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          318 LAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             EEEEETTTTEEEEEEECS
T ss_pred             EEEEeccccceeeeeecC
Confidence            999999999988887654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.89  E-value=1.3e-21  Score=219.61  Aligned_cols=270  Identities=13%  Similarity=0.116  Sum_probs=204.1

Q ss_pred             CceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcc-cCeEEEEEcCCCCEEEEEeC---CCcEEEEECCC-
Q 038577          306 REKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHY-FDVNCLAYSPDSQLLATGAD---DNKVKVWTVSS-  380 (860)
Q Consensus       306 ~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~---dg~i~iwd~~~-  380 (860)
                      ..++.+++|+|||+.|++++..+|.+.+|++.++.... +..|. ..+..++|+|| +.+++++.   +...++|.+.. 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            34799999999999999998867999999997766544 44444 67999999999 77777765   45556654432 


Q ss_pred             --CeeEEEeecCCCceEEEEEeeCCCE-EEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecC--
Q 038577          381 --GFCFVTFTEHTNAVTALHFMANNHS-LLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLD--  455 (860)
Q Consensus       381 --~~~~~~~~~~~~~v~~i~~~~~~~~-l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--  455 (860)
                        +... .+... ..+...+|+|+++. +++.+.++.+.+||+.+++..+....+.    .+++++|||++++.++.+  
T Consensus        99 ~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~----~~~~~spDG~~la~~~~~~~  172 (582)
T 3o4h_A           99 RPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG----FGFVSDIRGDLIAGLGFFGG  172 (582)
T ss_dssp             STTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS----CEEEEEEETTEEEEEEEEET
T ss_pred             CCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC----ceEEECCCCCEEEEEEEcCC
Confidence              3333 33322 23456788888853 3444455566699998887655544332    788999999999987765  


Q ss_pred             --CCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCC--cEEEEEccCCcceeEEcccCCCeEEEE-----
Q 038577          456 --SFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDK--TVRLWNVFEGKGSVESFPHTHDVLTVV-----  526 (860)
Q Consensus       456 --~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~-----  526 (860)
                        . .|++||+.+++.. .+..|.+.+..++|||||++|+++..++  .|++||+.+++.. ....+...+..++     
T Consensus       173 ~~~-~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~  249 (582)
T 3o4h_A          173 GRV-SLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAIT  249 (582)
T ss_dssp             TEE-EEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEE
T ss_pred             CCe-EEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcccc
Confidence              4 7999999988865 6677888999999999999999888888  8999999988755 5556666666667     


Q ss_pred             ---EeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCC
Q 038577          527 ---YRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSK  603 (860)
Q Consensus       527 ---~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg  603 (860)
                         |+|||.++++++.+|.+++|++  |+.....   .                    ..+.+++|+ ||+++++++.+.
T Consensus       250 ~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~---~--------------------~~v~~~~~s-dg~~l~~~s~~~  303 (582)
T 3o4h_A          250 WLGYLPDGRLAVVARREGRSAVFID--GERVEAP---Q--------------------GNHGRVVLW-RGKLVTSHTSLS  303 (582)
T ss_dssp             EEEECTTSCEEEEEEETTEEEEEET--TEEECCC---S--------------------SEEEEEEEE-TTEEEEEEEETT
T ss_pred             ceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC---C--------------------CceEEEEec-CCEEEEEEcCCC
Confidence               9999999999999999999999  6554311   1                    248899999 999999888764


Q ss_pred             ---eEEEEECCC
Q 038577          604 ---YICMYDVAD  612 (860)
Q Consensus       604 ---~v~vwd~~~  612 (860)
                         .+.+||..+
T Consensus       304 ~p~~l~~~d~~~  315 (582)
T 3o4h_A          304 TPPRIVSLPSGE  315 (582)
T ss_dssp             EEEEEEEETTCC
T ss_pred             CCCeEEEEcCCC
Confidence               467777654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.88  E-value=3.7e-19  Score=186.65  Aligned_cols=295  Identities=11%  Similarity=0.124  Sum_probs=199.7

Q ss_pred             CeEEEEEC--CCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCC----CcEEEEEccc--CeE--EEEee-cCCceeEEE
Q 038577           32 NRVSVTDL--IKSKTVTLPVESSSNICRIAVSPDGTFLLTVDEN----QRCHFINLHC--HVV--LHRVR-FKYPVNAIL  100 (860)
Q Consensus        32 ~~i~v~d~--~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d----~~i~vwd~~~--~~~--~~~~~-~~~~v~~~~  100 (860)
                      +.|.+|++  .+++.......+...+..++|||||++|++++.+    +.|.+|++..  ++.  +.... +......++
T Consensus        27 ~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~  106 (361)
T 3scy_A           27 KGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLT  106 (361)
T ss_dssp             CEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEE
T ss_pred             CCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEE
Confidence            56888755  6777644332377888999999999999998875    7999999875  443  33333 455677788


Q ss_pred             ECCCCCEEEEE--eCCeEEEEeCCCCCcccceeEEEEEeec--------cCCCeEEEEEcCCCCeEEEee-cCCeEEEEe
Q 038577          101 FSPNGKYIAVG--TGKLVQIWRSPGFKKEVFAFELIRTLAD--------CNDKVTALNWSPDSNYLLVGS-KDLAVRLFY  169 (860)
Q Consensus       101 fspdg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~--------h~~~v~~l~~s~d~~~l~s~~-~dg~v~vwd  169 (860)
                      +  ++++|+++  .++.|.+|++........... .....+        +...+.+++|+|||+++++++ .++.|.+|+
T Consensus       107 ~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~  183 (361)
T 3scy_A          107 T--NGKNIVTANYSGGSITVFPIGQDGALLPASD-VIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFN  183 (361)
T ss_dssp             E--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE-EEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             E--CCCEEEEEECCCCEEEEEEeCCCCcCcccce-eEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEE
Confidence            8  88888877  578999999975432111111 111111        123458899999999776655 478999999


Q ss_pred             eccccc----C-cccc--cceEeecCCCcEEEEEEccCCCCCccceEEEEc-CCccEEEeeecCCCCCCccccCCCCCCC
Q 038577          170 VKEKLK----G-IHTN--KPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIA-RDCYMFSWGFSGNDGKIDETMEDSEPPS  241 (860)
Q Consensus       170 ~~~~~~----~-~~~~--~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~  241 (860)
                      ++....    . ....  .......+...+..++|+|+++     ++++++ .++.|.+|++.++..             
T Consensus       184 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~-----~l~v~~~~~~~v~v~~~~~g~~-------------  245 (361)
T 3scy_A          184 INPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGK-----FAYLINEIGGTVIAFRYADGML-------------  245 (361)
T ss_dssp             ECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSS-----EEEEEETTTCEEEEEEEETTEE-------------
T ss_pred             EcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCC-----EEEEEcCCCCeEEEEEecCCce-------------
Confidence            986511    0 1000  0122334456678999999998     887777 689999999985421             


Q ss_pred             CCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcC--CeEEEEECC--Cce--eEEEEeecCceeEEEEEe
Q 038577          242 PGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSN--GVFGLYQMP--DFV--CIHLLSISREKITTAVFN  315 (860)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--g~i~~~~~~--~~~--~~~~~~~~~~~i~~~~~s  315 (860)
                              .  .+........+......++|+|+|++|+++..+  +.|.+|++.  +++  .+..+.. ...+..++|+
T Consensus       246 --------~--~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~s  314 (361)
T 3scy_A          246 --------D--EIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIIT  314 (361)
T ss_dssp             --------E--EEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEEC
T ss_pred             --------E--EeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEEC
Confidence                    0  111112223334557899999999999777665  899999985  344  3444444 4578899999


Q ss_pred             eCCCEEEEEEccCCcEEEEEc--cCceEEEEe-cCcccCeEEEEEc
Q 038577          316 ELGNWLVFGCAKLGQLLVWEW--RSESYILKQ-QGHYFDVNCLAYS  358 (860)
Q Consensus       316 ~~~~~l~~~~~~~g~i~v~d~--~~~~~~~~~-~~~~~~v~~~~~s  358 (860)
                      |+|++++++...++.+.+|++  .+++..... ..+...+.|+.|.
T Consensus       315 pdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          315 PNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             TTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            999999999877799999655  466654433 2244568888875

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.88  E-value=1e-19  Score=190.85  Aligned_cols=279  Identities=12%  Similarity=0.109  Sum_probs=193.0

Q ss_pred             CCEEEEEEc----CCeEEEEEC--CCceeEEEEeecCceeEEEEEeeCCCEEEEEEcc---CCcEEEEEccC--ceE--E
Q 038577          276 LDMVVVGFS----NGVFGLYQM--PDFVCIHLLSISREKITTAVFNELGNWLVFGCAK---LGQLLVWEWRS--ESY--I  342 (860)
Q Consensus       276 ~~~l~~~~~----~g~i~~~~~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~---~g~i~v~d~~~--~~~--~  342 (860)
                      ..++++|+.    ++.|.+|.+  .+++.......+...+..++|+|+|+.+++++.+   ++.+.+|++..  +..  +
T Consensus        13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~   92 (361)
T 3scy_A           13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL   92 (361)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred             ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence            345566643    467888866  4454433322256677889999999999988873   47999998875  433  3


Q ss_pred             EEecCcccCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEe------ec--------CCCceEEEEEeeCCCEEE
Q 038577          343 LKQQGHYFDVNCLAYSPDSQLLATGA-DDNKVKVWTVSSGFCFVTF------TE--------HTNAVTALHFMANNHSLL  407 (860)
Q Consensus       343 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~------~~--------~~~~v~~i~~~~~~~~l~  407 (860)
                      .....+......+++  +++++++++ .++.|.+|++.....+..+      .+        +...+.+++|+|++++++
T Consensus        93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~  170 (361)
T 3scy_A           93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL  170 (361)
T ss_dssp             EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred             eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence            333445556777887  788777766 5789999999754322111      11        123458899999999776


Q ss_pred             EEe-CCCcEEEEEccccce------e------eEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceE--EE
Q 038577          408 SAS-LDGTVRAWDLFRYRN------F------RTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLL--DI  472 (860)
Q Consensus       408 s~~-~dg~i~~wd~~~~~~------~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~--~~  472 (860)
                      +++ .++.+.+|++.....      +      .............++|+|+|++++++....+.|.+|++.+++..  ..
T Consensus       171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~  250 (361)
T 3scy_A          171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT  250 (361)
T ss_dssp             EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred             EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence            655 478999999875442      1      23344455567899999999999888864459999999877542  22


Q ss_pred             e---cCcccCeEEEEEcCCCCEEEEEeCC--CcEEEEEcc--CCcc-eeEEcccCCCeEEEEEeeCCCEEEEEe-CCCeE
Q 038577          473 L---SGHEGPVHGLVFSPTNATLASSSWD--KTVRLWNVF--EGKG-SVESFPHTHDVLTVVYRPDGRQLACST-LDGQI  543 (860)
Q Consensus       473 ~---~~h~~~v~~l~~s~~~~~l~s~~~d--g~i~iwd~~--~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i  543 (860)
                      +   ..+.....+++|+|||++|+++..+  +.|.+|++.  +++. ..........+..++|+|||++|++++ .++.|
T Consensus       251 ~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v  330 (361)
T 3scy_A          251 VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVI  330 (361)
T ss_dssp             EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEE
T ss_pred             EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCE
Confidence            2   2334557899999999998776654  889999996  3331 111122255788999999999998887 67889


Q ss_pred             EEE--eCCCCceeEE
Q 038577          544 HFW--DPLNGELMYT  556 (860)
Q Consensus       544 ~iw--d~~~~~~~~~  556 (860)
                      .+|  |..+++....
T Consensus       331 ~v~~~d~~~g~~~~~  345 (361)
T 3scy_A          331 QIFERDQATGLLTDI  345 (361)
T ss_dssp             EEEEECTTTCCEEEC
T ss_pred             EEEEEECCCCcEeec
Confidence            995  5557766543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=5.8e-21  Score=214.31  Aligned_cols=244  Identities=13%  Similarity=0.108  Sum_probs=178.9

Q ss_pred             ccCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeeEEEeecCC-CceEEEEEeeCCCEEEEEeC---CCcEEEEEccc-
Q 038577          349 YFDVNCLAYSPDSQLLATGAD-DNKVKVWTVSSGFCFVTFTEHT-NAVTALHFMANNHSLLSASL---DGTVRAWDLFR-  422 (860)
Q Consensus       349 ~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~s~~~---dg~i~~wd~~~-  422 (860)
                      ..+|.+++|+|||+.||+++. ||++++|++.++...+ +..|. ..+..++|+|| +.+++++.   +....+|.+.. 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            557999999999999999887 9999999997666544 44455 68999999999 77777765   45566766544 


Q ss_pred             -cceeeEeeCCCCCcEEEEEECCCCCEEE-EEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCC--
Q 038577          423 -YRNFRTFTTPSSRQFVSLASDQSGEVIC-AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWD--  498 (860)
Q Consensus       423 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d--  498 (860)
                       ......+....  .....+++|+|+.++ +...++ .+.+||+.+++.......+.   .+++|||||++|++++.+  
T Consensus        99 ~~g~~~~l~~~~--~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~  172 (582)
T 3o4h_A           99 RPGEEQRLEAVK--PMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGG  172 (582)
T ss_dssp             STTCCEECTTSC--SBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEET
T ss_pred             CCCccccccCCC--CceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCC
Confidence             22222333322  233557777776433 333333 56699999887766554333   889999999999988877  


Q ss_pred             --CcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCC--eEEEEeCCCCceeEEEecccccCCCcccccccc
Q 038577          499 --KTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDG--QIHFWDPLNGELMYTIEGRRDISGGRLMTDRRS  574 (860)
Q Consensus       499 --g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  574 (860)
                        +.|++||+.+++ ...+..+...+..++|||||++|+++..++  .|++||+.+++.. .+..+.....         
T Consensus       173 ~~~~i~~~d~~~g~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~---------  241 (582)
T 3o4h_A          173 GRVSLFTSNLSSGG-LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFS---------  241 (582)
T ss_dssp             TEEEEEEEETTTCC-CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHH---------
T ss_pred             CCeEEEEEcCCCCC-ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChh---------
Confidence              789999998887 446677888899999999999999888888  8999999998877 5554432100         


Q ss_pred             ccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEE
Q 038577          575 AANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLL  616 (860)
Q Consensus       575 ~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~  616 (860)
                         ..........+|||||.++++++.++.+++|++  |+..
T Consensus       242 ---~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~  278 (582)
T 3o4h_A          242 ---SYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERV  278 (582)
T ss_dssp             ---HHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEE
T ss_pred             ---hhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCee
Confidence               000112345559999999999999999999999  6543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.87  E-value=3.8e-20  Score=196.59  Aligned_cols=295  Identities=12%  Similarity=0.033  Sum_probs=203.1

Q ss_pred             EEEECCCCcEEeeccCCccCeeE-----EEEcCCCCEEEEEcC-CC--cEEEEEcccCeEEEEeec-CCceeEEEECCCC
Q 038577           35 SVTDLIKSKTVTLPVESSSNICR-----IAVSPDGTFLLTVDE-NQ--RCHFINLHCHVVLHRVRF-KYPVNAILFSPNG  105 (860)
Q Consensus        35 ~v~d~~~~~~~~~~~~h~~~v~~-----va~spdg~~la~~~~-d~--~i~vwd~~~~~~~~~~~~-~~~v~~~~fspdg  105 (860)
                      ..+|..++.....+..|......     .+|||||++||+++. ++  .|.+||+.+++....... ...+..++|||||
T Consensus        13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg   92 (388)
T 3pe7_A           13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD   92 (388)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS
T ss_pred             EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC
Confidence            34578888877777677665555     899999999999887 56  488899999988776663 3344578999999


Q ss_pred             CEEEEEe-CCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEE--EcCCCCeEEEe----------------------e
Q 038577          106 KYIAVGT-GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALN--WSPDSNYLLVG----------------------S  160 (860)
Q Consensus       106 ~~la~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~s~d~~~l~s~----------------------~  160 (860)
                      +.|+++. ++.|++||+.+++.       ......+...+....  ++||+++++..                      .
T Consensus        93 ~~l~~~~~~~~l~~~d~~~g~~-------~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (388)
T 3pe7_A           93 DALFYVKDGRNLMRVDLATLEE-------NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK  165 (388)
T ss_dssp             SEEEEEETTTEEEEEETTTCCE-------EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred             CEEEEEeCCCeEEEEECCCCcc-------eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence            9999984 67999999998873       333444555554443  48999988743                      2


Q ss_pred             cCCeEEEEeecccccCcccccceEeecCCCcEEEEEEcc-CCCCCccceEEEEcCC------ccEEEeeecCCCCCCccc
Q 038577          161 KDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSV-DKKTDKVNRIYTIARD------CYMFSWGFSGNDGKIDET  233 (860)
Q Consensus       161 ~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~~~~~~l~s~~~d------g~i~~w~~~~~~~~~~~~  233 (860)
                      .+..|.+||+.++       ....+..+...+..+.|+| |++     .|+.+..+      ..|.+++..++..     
T Consensus       166 ~~~~l~~~d~~~g-------~~~~l~~~~~~~~~~~~sp~dg~-----~l~~~~~~~~~~~~~~l~~~d~~~~~~-----  228 (388)
T 3pe7_A          166 PCCRLMRVDLKTG-------ESTVILQENQWLGHPIYRPYDDS-----TVAFCHEGPHDLVDARMWLINEDGTNM-----  228 (388)
T ss_dssp             CCEEEEEEETTTC-------CEEEEEEESSCEEEEEEETTEEE-----EEEEEECSCTTTSSCSEEEEETTSCCC-----
T ss_pred             CcceEEEEECCCC-------ceEEeecCCccccccEECCCCCC-----EEEEEEecCCCCCcceEEEEeCCCCce-----
Confidence            3467999998876       3445556777899999999 998     88777653      2677776655321     


Q ss_pred             cCCCCCCCCCCCcceeeeEEeeeeccccCCC--CceEEEEecCCCCEEEEEEc-CC----eEEEEECCCceeEEEEeecC
Q 038577          234 MEDSEPPSPGTPERRVKKWGLLRKDDFSQAP--SKVTACDYHRGLDMVVVGFS-NG----VFGLYQMPDFVCIHLLSISR  306 (860)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~-~g----~i~~~~~~~~~~~~~~~~~~  306 (860)
                                              ..+..+.  ..+....|+|+|+.|+..+. ++    .|++||+.+++.........
T Consensus       229 ------------------------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~  284 (388)
T 3pe7_A          229 ------------------------RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPA  284 (388)
T ss_dssp             ------------------------EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECC
T ss_pred             ------------------------EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCC
Confidence                                    1111122  24778899999998865443 22    39999998887543322221


Q ss_pred             c-----eeEEEEEeeCCCEEEEEE--------ccCCcEEEEEccCceEEEEecCccc-----------CeEEEEEcCCCC
Q 038577          307 E-----KITTAVFNELGNWLVFGC--------AKLGQLLVWEWRSESYILKQQGHYF-----------DVNCLAYSPDSQ  362 (860)
Q Consensus       307 ~-----~i~~~~~s~~~~~l~~~~--------~~~g~i~v~d~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~  362 (860)
                      .     .....+|+|||+.+++..        ..+..|++||+.+++.. .+..+..           .+.+++|+|||+
T Consensus       285 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~  363 (388)
T 3pe7_A          285 CSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDK  363 (388)
T ss_dssp             EEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSS
T ss_pred             ceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCC
Confidence            0     012237999999998764        33478999999987654 3434444           478889999999


Q ss_pred             EEEEEeC-CCcEEEEEC
Q 038577          363 LLATGAD-DNKVKVWTV  378 (860)
Q Consensus       363 ~l~~~~~-dg~i~iwd~  378 (860)
                      .|+..+. +|...+|.+
T Consensus       364 ~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          364 QILFTSDVHGKPALYLA  380 (388)
T ss_dssp             EEEEEECTTSSCEEEEE
T ss_pred             EEEEEecCCCceeEEEE
Confidence            8887664 666666654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.86  E-value=3.5e-20  Score=196.88  Aligned_cols=307  Identities=10%  Similarity=0.007  Sum_probs=208.7

Q ss_pred             EECCCceeEEEEeecCceeEE-----EEEeeCCCEEEEEEccCC--cEEEEEccCceEEEEecCcccCeEEEEEcCCCCE
Q 038577          291 YQMPDFVCIHLLSISREKITT-----AVFNELGNWLVFGCAKLG--QLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQL  363 (860)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~i~~-----~~~s~~~~~l~~~~~~~g--~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~  363 (860)
                      ++..++.....+..+......     .+|+|||+++++++..+|  .|.+||+.+++......++...+..++|+|||+.
T Consensus        15 ~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~   94 (388)
T 3pe7_A           15 QDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDA   94 (388)
T ss_dssp             ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSE
T ss_pred             ecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCE
Confidence            455566677777666555554     789999999999987556  4888899998877666666666657789999999


Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEE--EeeCCCEEEEEe----------------------CCCcEEEEE
Q 038577          364 LATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALH--FMANNHSLLSAS----------------------LDGTVRAWD  419 (860)
Q Consensus       364 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~--~~~~~~~l~s~~----------------------~dg~i~~wd  419 (860)
                      |+.++.++.|++||+.+++.......+...+....  ++++++.++...                      .+..|.+||
T Consensus        95 l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d  174 (388)
T 3pe7_A           95 LFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVD  174 (388)
T ss_dssp             EEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEE
Confidence            99999999999999999988777766666554444  488998887432                      346799999


Q ss_pred             ccccceeeEeeCCCCCcEEEEEECC-CCCEEEEEecC-----CCeEEEEECCCCceEEEecCcc-cCeEEEEEcCCCCEE
Q 038577          420 LFRYRNFRTFTTPSSRQFVSLASDQ-SGEVICAGTLD-----SFEIFVWSMKTGRLLDILSGHE-GPVHGLVFSPTNATL  492 (860)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~-----~~~i~v~d~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l  492 (860)
                      +.+++.......  ...+..+.++| +|+.|+....+     ...|+++|..+++.......+. ..+..++|+|||+.|
T Consensus       175 ~~~g~~~~l~~~--~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l  252 (388)
T 3pe7_A          175 LKTGESTVILQE--NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSAL  252 (388)
T ss_dssp             TTTCCEEEEEEE--SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCE
T ss_pred             CCCCceEEeecC--CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEE
Confidence            988865544432  33578899999 99998877653     2278999987665544333222 357889999999987


Q ss_pred             EEEeCC-C----cEEEEEccCCcceeEEcccCC------CeEEEEEeeCCCEEEEE---------eCCCeEEEEeCCCCc
Q 038577          493 ASSSWD-K----TVRLWNVFEGKGSVESFPHTH------DVLTVVYRPDGRQLACS---------TLDGQIHFWDPLNGE  552 (860)
Q Consensus       493 ~s~~~d-g----~i~iwd~~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~~~---------~~dg~i~iwd~~~~~  552 (860)
                      +..+.+ +    .|++||+.+++... +.....      ....++|+|||+.|+..         ..+..|++||+.+++
T Consensus       253 ~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (388)
T 3pe7_A          253 VYVSYLKGSPDRFIYSADPETLENRQ-LTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT  331 (388)
T ss_dssp             EEEEEETTCCCEEEEEECTTTCCEEE-EEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred             EEEecCCCCCcceEEEEecCCCceEE-EEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence            665432 2    39999999887322 111111      01123799999988864         446689999999877


Q ss_pred             eeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEec-CCCeEEEEEC
Q 038577          553 LMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGG-SSKYICMYDV  610 (860)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~-~dg~v~vwd~  610 (860)
                      .. .+..+.....         .........+.+++|||||++|+..+ .+|...+|.+
T Consensus       332 ~~-~l~~~~~~~~---------~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          332 QH-RVARHDTSWK---------VFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             EE-EEEECCCCCC---------CBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             eE-EeccccCccc---------ccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence            53 3333321000         00000001257789999999888665 4666666644

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.85  E-value=1.4e-18  Score=180.55  Aligned_cols=302  Identities=13%  Similarity=0.116  Sum_probs=212.7

Q ss_pred             CCCEEEeee-------CCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcC----------CCcEEEEEcccC
Q 038577           22 QNTKLISPV-------GNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDE----------NQRCHFINLHCH   84 (860)
Q Consensus        22 dg~~l~~~~-------~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~----------d~~i~vwd~~~~   84 (860)
                      |++++++..       ++.|.+||..+++....+..+..+  .++|||||++|+++..          ++.|.+||..++
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            667766643       468999999999987666555444  9999999999998862          567999999999


Q ss_pred             eEEEEeec-------CCceeEEEECCCCCEEEEEe---CCeEEEEeCCCCCcccceeEEEEE-eeccCCCeEEEEEcCCC
Q 038577           85 VVLHRVRF-------KYPVNAILFSPNGKYIAVGT---GKLVQIWRSPGFKKEVFAFELIRT-LADCNDKVTALNWSPDS  153 (860)
Q Consensus        85 ~~~~~~~~-------~~~v~~~~fspdg~~la~~~---~~~i~iwd~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~s~d~  153 (860)
                      +.+..+..       ......++|+|||++|+++.   ++.|.+||+.+++       .+.. +. +. ....+.+.|++
T Consensus        92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~-------~~~~~i~-~~-~~~~v~~~p~~  162 (361)
T 2oiz_A           92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD-------YVEDVTA-AA-GCWSVIPQPNR  162 (361)
T ss_dssp             CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE-------EEEEEGG-GT-TEEEEEECTTS
T ss_pred             cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCc-------EEEEEec-CC-CcceeEEcCCC
Confidence            99988862       24578899999999999882   5799999999875       3444 33 22 22336677876


Q ss_pred             -CeEEEeecCCeEEEEeecccccCccccc-ceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCc
Q 038577          154 -NYLLVGSKDLAVRLFYVKEKLKGIHTNK-PFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKID  231 (860)
Q Consensus       154 -~~l~s~~~dg~v~vwd~~~~~~~~~~~~-~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~  231 (860)
                       ..+++.+.||.+.+|+.....+...... ...+..+..++ .+.+++++.     .++..+.++.+.++|+......  
T Consensus       163 ~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~-----~~~~~~~~~~v~v~d~~~~~~~--  234 (361)
T 2oiz_A          163 PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKD-----KAHFVSYYGNVYSADFSGDEVK--  234 (361)
T ss_dssp             SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSS-----EEEEEBTTSEEEEEECSSSSCE--
T ss_pred             CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCC-----EEEEEeCCCeEEEEEecCCCce--
Confidence             6778888999999999865311100000 01112222222 333466776     6777788899999998754320  


Q ss_pred             cccCCCCCCCCCCCcceeeeEEeeeec--cccCCCCceEEEEecCCCCEEEEEEc-----------CCeEEEEECCCcee
Q 038577          232 ETMEDSEPPSPGTPERRVKKWGLLRKD--DFSQAPSKVTACDYHRGLDMVVVGFS-----------NGVFGLYQMPDFVC  298 (860)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~-----------~g~i~~~~~~~~~~  298 (860)
                                      ....|.+....  ...........++++|+++.++++..           .+.|.+||+.+++.
T Consensus       235 ----------------~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~  298 (361)
T 2oiz_A          235 ----------------VDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR  298 (361)
T ss_dssp             ----------------EEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE
T ss_pred             ----------------ecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE
Confidence                            01122211100  00000111123688999998887754           35899999999999


Q ss_pred             EEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc--eEEEEecCcccCeEEEEEcCCCC
Q 038577          299 IHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE--SYILKQQGHYFDVNCLAYSPDSQ  362 (860)
Q Consensus       299 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~--~~~~~~~~~~~~v~~~~~s~~~~  362 (860)
                      +..+..+.  +..++|+|||+++++++ . +.|.+||..++  +.+..+..+......++++|+|.
T Consensus       299 v~~i~~~~--p~~ia~spdg~~l~v~n-~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          299 VARIPGRD--ALSMTIDQQRNLMLTLD-G-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEEECTT--CCEEEEETTTTEEEEEC-S-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             EEEEecCC--eeEEEECCCCCEEEEeC-C-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            99998887  99999999999888766 4 99999999999  98888766777788999999985

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.84  E-value=1.2e-18  Score=182.51  Aligned_cols=264  Identities=10%  Similarity=0.070  Sum_probs=184.2

Q ss_pred             CcEEEEEc--cCceEEEE--ec-CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeeEEEeecC-CCceEEEEEee
Q 038577          329 GQLLVWEW--RSESYILK--QQ-GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVS-SGFCFVTFTEH-TNAVTALHFMA  401 (860)
Q Consensus       329 g~i~v~d~--~~~~~~~~--~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~-~~~v~~i~~~~  401 (860)
                      +.|.+|++  .+++....  .. .....+..++|+|+|++|++++.+ .|.+|++. +++........ .+.+.+++|+|
T Consensus        14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp   92 (365)
T 1jof_A           14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT   92 (365)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS
T ss_pred             CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC
Confidence            45776654  45544322  11 233467889999999999998887 99999997 77665433211 13356689999


Q ss_pred             CCCE--EEEEe-------------CCCcEEEEEcc-ccceeeEeeC---CCCCcEEEEEECCCCCEEEEEecCCCeEEEE
Q 038577          402 NNHS--LLSAS-------------LDGTVRAWDLF-RYRNFRTFTT---PSSRQFVSLASDQSGEVICAGTLDSFEIFVW  462 (860)
Q Consensus       402 ~~~~--l~s~~-------------~dg~i~~wd~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~  462 (860)
                      +|++  ++++.             .++.+.+|++. +++....+..   .....+.+++++|+|++++++......|++|
T Consensus        93 dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~  172 (365)
T 1jof_A           93 NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTH  172 (365)
T ss_dssp             CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEE
Confidence            9984  44543             68999999997 4554433331   2345688999999999998877644499999


Q ss_pred             ECC-CCceE--EEec--CcccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcc--CCccee---EEc--c-----cCC----
Q 038577          463 SMK-TGRLL--DILS--GHEGPVHGLVFSPTNATLASSSW-DKTVRLWNVF--EGKGSV---ESF--P-----HTH----  520 (860)
Q Consensus       463 d~~-~~~~~--~~~~--~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~--~~~~~~---~~~--~-----~~~----  520 (860)
                      |+. +++..  ..+.  .|...+..++|+|||+++++++. ++.|.+|++.  +++...   ...  .     +..    
T Consensus       173 ~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~  252 (365)
T 1jof_A          173 RKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGK  252 (365)
T ss_dssp             EECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSS
T ss_pred             EECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccc
Confidence            998 77653  2333  24567899999999999988775 6899999875  344221   111  1     111    


Q ss_pred             --CeEEEE-EeeCCCEEEEEeCCC------eEEEEeCC-CCceeEE---EecccccCCCccccccccccccCCCCcEEEE
Q 038577          521 --DVLTVV-YRPDGRQLACSTLDG------QIHFWDPL-NGELMYT---IEGRRDISGGRLMTDRRSAANSSSGKCFTTL  587 (860)
Q Consensus       521 --~v~~~~-~s~~~~~l~~~~~dg------~i~iwd~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l  587 (860)
                        .+..++ |+|||++|++++.+.      .|.+|++. +++....   ...+.                    ..+..+
T Consensus       253 ~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~--------------------~~~~~~  312 (365)
T 1jof_A          253 GLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT--------------------SGGHSN  312 (365)
T ss_dssp             BSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS--------------------CCTTCC
T ss_pred             ccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCC--------------------CCcccc
Confidence              488999 999999988776432      89999986 5664432   22111                    124678


Q ss_pred             EEec---CCCEEEEecCC-CeEEEEECCCc
Q 038577          588 CYSA---DGSYILAGGSS-KYICMYDVADQ  613 (860)
Q Consensus       588 ~~s~---~g~~l~~~~~d-g~v~vwd~~~~  613 (860)
                      +|+|   ||++|++++.+ +.|.+|+++..
T Consensus       313 a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          313 AVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             eecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            9999   89999998864 89999999876

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.84  E-value=4.4e-18  Score=178.20  Aligned_cols=274  Identities=7%  Similarity=0.004  Sum_probs=186.6

Q ss_pred             CeEEEEE--CCCCcEEeecc---CCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcc-cCeEEEEeec--CCceeEEEECC
Q 038577           32 NRVSVTD--LIKSKTVTLPV---ESSSNICRIAVSPDGTFLLTVDENQRCHFINLH-CHVVLHRVRF--KYPVNAILFSP  103 (860)
Q Consensus        32 ~~i~v~d--~~~~~~~~~~~---~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~-~~~~~~~~~~--~~~v~~~~fsp  103 (860)
                      +.|.+|+  ..+++......   ++...+..++|+|||++|++++.+ .|.+|++. +++......+  .+...+++|+|
T Consensus        14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp   92 (365)
T 1jof_A           14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT   92 (365)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS
T ss_pred             CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC
Confidence            4577665  56776543321   344578999999999999988887 99999997 7877654442  24467799999


Q ss_pred             CCCE--EEEE--------------eCCeEEEEeCCC-CCcccceeEEEEEee-ccCCCeEEEEEcCCCCeEEEeec-CCe
Q 038577          104 NGKY--IAVG--------------TGKLVQIWRSPG-FKKEVFAFELIRTLA-DCNDKVTALNWSPDSNYLLVGSK-DLA  164 (860)
Q Consensus       104 dg~~--la~~--------------~~~~i~iwd~~~-~~~~~~~~~~~~~~~-~h~~~v~~l~~s~d~~~l~s~~~-dg~  164 (860)
                      ||++  ++++              .++.+.+|++.. ++..    ..+..+. .+...+.+++|+|||++|+++.. ++.
T Consensus        93 dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~  168 (365)
T 1jof_A           93 NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLE----KNVQNYEYQENTGIHGMVFDPTETYLYSADLTANK  168 (365)
T ss_dssp             CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEE----EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCc----ceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCE
Confidence            9994  4443              478899999974 4310    0111111 24567999999999998887654 679


Q ss_pred             EEEEeec-ccccCcccccceEee--cCCCcEEEEEEccCCCCCccceEEEEcC-CccEEEeeecCCCCCCccccCCCCCC
Q 038577          165 VRLFYVK-EKLKGIHTNKPFLLL--GHRDSVVGCFFSVDKKTDKVNRIYTIAR-DCYMFSWGFSGNDGKIDETMEDSEPP  240 (860)
Q Consensus       165 v~vwd~~-~~~~~~~~~~~~~~~--~h~~~i~~~~~~~~~~~~~~~~l~s~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~  240 (860)
                      |++|+++ ++ +.   .....+.  .|...+..++|+|+++     ++++++. ++.+.+|+++.....           
T Consensus       169 v~~~~~~~~g-~~---~~~~~~~~~~~g~~p~~~~~spdg~-----~l~v~~~~~~~v~v~~~~~~~g~-----------  228 (365)
T 1jof_A          169 LWTHRKLASG-EV---ELVGSVDAPDPGDHPRWVAMHPTGN-----YLYALMEAGNRICEYVIDPATHM-----------  228 (365)
T ss_dssp             EEEEEECTTS-CE---EEEEEEECSSTTCCEEEEEECTTSS-----EEEEEETTTTEEEEEEECTTTCC-----------
T ss_pred             EEEEEECCCC-CE---EEeeeEecCCCCCCCCEeEECCCCC-----EEEEEECCCCeEEEEEEeCCCCc-----------
Confidence            9999998 55 11   1112232  2467799999999998     8887765 689999987642110           


Q ss_pred             CCCCCcceeeeEEeeeecccc----CCCC------ceEEEE-ecCCCCEEEEEEcCC------eEEEEECC-CceeEEE-
Q 038577          241 SPGTPERRVKKWGLLRKDDFS----QAPS------KVTACD-YHRGLDMVVVGFSNG------VFGLYQMP-DFVCIHL-  301 (860)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~----~~~~------~v~~~~-~~~~~~~l~~~~~~g------~i~~~~~~-~~~~~~~-  301 (860)
                              . .........+.    ++..      .+..++ |+|+|++|+++..+.      .|.+|++. +++.... 
T Consensus       229 --------~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~  299 (365)
T 1jof_A          229 --------P-VYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL  299 (365)
T ss_dssp             --------E-EEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE
T ss_pred             --------E-EEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEee
Confidence                    0 00000011111    1122      588999 999999988776543      89999986 5554432 


Q ss_pred             --EeecCceeEEEEEee---CCCEEEEEEccCCcEEEEEccCc
Q 038577          302 --LSISREKITTAVFNE---LGNWLVFGCAKLGQLLVWEWRSE  339 (860)
Q Consensus       302 --~~~~~~~i~~~~~s~---~~~~l~~~~~~~g~i~v~d~~~~  339 (860)
                        ...+...+..++|+|   ||++++++..+++.|.+|++...
T Consensus       300 ~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          300 FLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             eeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence              333444577899999   89999999877799999998766

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.84  E-value=1.3e-18  Score=185.33  Aligned_cols=266  Identities=14%  Similarity=0.137  Sum_probs=186.1

Q ss_pred             eCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccC-----------eE-----EEEeecC
Q 038577           30 VGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCH-----------VV-----LHRVRFK   93 (860)
Q Consensus        30 ~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~-----------~~-----~~~~~~~   93 (860)
                      ..+.+++|+....       .....+..+++++++.++++++.++ +++|+....           ..     ...+.+.
T Consensus        21 ~~~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (434)
T 2oit_A           21 ALKKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMK   92 (434)
T ss_dssp             ECCEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCS
T ss_pred             eeeeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCC
Confidence            3466777764311       1334689999999999999998887 888875421           11     1233466


Q ss_pred             CceeEEEECCCCCEEEE----E-eCCeEEEEeCCCCC----cccceeEEEEEeeccCCCeEEEEEcCC-CCeEEEeecCC
Q 038577           94 YPVNAILFSPNGKYIAV----G-TGKLVQIWRSPGFK----KEVFAFELIRTLADCNDKVTALNWSPD-SNYLLVGSKDL  163 (860)
Q Consensus        94 ~~v~~~~fspdg~~la~----~-~~~~i~iwd~~~~~----~~~~~~~~~~~~~~h~~~v~~l~~s~d-~~~l~s~~~dg  163 (860)
                      ..|.+++|+|+|++||+    + .|+.|+|||+.++.    ....+......+.+|.+.|.+++|+|+ +.+|++++.||
T Consensus        93 ~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg  172 (434)
T 2oit_A           93 FPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG  172 (434)
T ss_dssp             SCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTS
T ss_pred             CcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCC
Confidence            78999999999999994    4 58999999987541    011122335667789999999999998 78999999999


Q ss_pred             eEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCC
Q 038577          164 AVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPG  243 (860)
Q Consensus       164 ~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~  243 (860)
                      +|++||+.++      .......+|...|.+++|+|+++     +|++++.||.|++||.+. ..               
T Consensus       173 ~v~iwD~~~~------~~~~~~~~~~~~v~~v~wspdg~-----~lasgs~dg~v~iwd~~~-~~---------------  225 (434)
T 2oit_A          173 SIAVLQVTET------VKVCATLPSTVAVTSVCWSPKGK-----QLAVGKQNGTVVQYLPTL-QE---------------  225 (434)
T ss_dssp             CEEEEEESSS------EEEEEEECGGGCEEEEEECTTSS-----CEEEEETTSCEEEECTTC-CE---------------
T ss_pred             eEEEEEcCCC------cceeeccCCCCceeEEEEcCCCC-----EEEEEcCCCcEEEEccCC-cc---------------
Confidence            9999999887      44556677999999999999999     999999999999999872 11               


Q ss_pred             CCcceeeeEEeeeeccc-cCCCCceEEEEecCCCCEEEEE-EcCC------eEEEEECCCce-----eEEEEe-------
Q 038577          244 TPERRVKKWGLLRKDDF-SQAPSKVTACDYHRGLDMVVVG-FSNG------VFGLYQMPDFV-----CIHLLS-------  303 (860)
Q Consensus       244 ~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~-~~~g------~i~~~~~~~~~-----~~~~~~-------  303 (860)
                             .-.+...... ..+...+.+++|++++.++++. ..+|      .+++|++...+     ....+.       
T Consensus       226 -------~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~  298 (434)
T 2oit_A          226 -------KKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSC  298 (434)
T ss_dssp             -------EEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCC
T ss_pred             -------cccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCC
Confidence                   0000000001 1233479999999988777543 3333      38899987542     111111       


Q ss_pred             ecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc
Q 038577          304 ISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR  337 (860)
Q Consensus       304 ~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~  337 (860)
                      ....+...+..-++.+.+++++...+.|.+....
T Consensus       299 ~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~  332 (434)
T 2oit_A          299 TERQHHYYLSYIEEWDLVLAASAASTEVSILARQ  332 (434)
T ss_dssp             SSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred             CCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence            1122223344448888888888877777777654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.84  E-value=7.2e-18  Score=175.21  Aligned_cols=298  Identities=11%  Similarity=0.082  Sum_probs=211.9

Q ss_pred             CCCCEEEEEc------CCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEe-----------CCeEEEEeCCCC
Q 038577           62 PDGTFLLTVD------ENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGT-----------GKLVQIWRSPGF  124 (860)
Q Consensus        62 pdg~~la~~~------~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~-----------~~~i~iwd~~~~  124 (860)
                      |+++++.+..      .|+.|.+||..+++.+..+.....- .++|+|||++++++.           ++.|.+||..+.
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            4667766653      3679999999999998888743333 999999999999883           467999999877


Q ss_pred             CcccceeEEEEEeecc------CCCeEEEEEcCCCCeEEEeec--CCeEEEEeecccccCcccccceE-eecCCCcEEEE
Q 038577          125 KKEVFAFELIRTLADC------NDKVTALNWSPDSNYLLVGSK--DLAVRLFYVKEKLKGIHTNKPFL-LLGHRDSVVGC  195 (860)
Q Consensus       125 ~~~~~~~~~~~~~~~h------~~~v~~l~~s~d~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~-~~~h~~~i~~~  195 (860)
                      +       .+..+...      ......++|+|||++|+++..  ++.|.+||+.+.      ..... +. +.+ ...+
T Consensus        92 ~-------~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~------~~~~~~i~-~~~-~~~v  156 (361)
T 2oiz_A           92 T-------FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG------DYVEDVTA-AAG-CWSV  156 (361)
T ss_dssp             C-------EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTT------EEEEEEGG-GTT-EEEE
T ss_pred             c-------EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCC------cEEEEEec-CCC-ccee
Confidence            6       34444422      245678999999999998864  579999999887      33333 22 222 2335


Q ss_pred             EEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCC
Q 038577          196 FFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRG  275 (860)
Q Consensus       196 ~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  275 (860)
                      .+.|++..    .+++.+.||.+.+|+.......                     .........+.....+ ..+.++|+
T Consensus       157 ~~~p~~~~----~~~~~~~dg~~~~v~~~~~g~~---------------------~~~~~~~~~~~~~~~~-~~~~~~~~  210 (361)
T 2oiz_A          157 IPQPNRPR----SFMTICGDGGLLTINLGEDGKV---------------------ASQSRSKQMFSVKDDP-IFIAPALD  210 (361)
T ss_dssp             EECTTSSS----EEEEEETTSSEEEEEECTTSSE---------------------EEEEECCCCSCTTTSC-BCSCCEEC
T ss_pred             EEcCCCCe----eEEEECCCCcEEEEEECCCCcE---------------------eeeccccceEcCCCCc-eEEEeccc
Confidence            67777632    7888999999999988652110                     0000000111111111 12334677


Q ss_pred             CCEEEEEEcCCeEEEEECCCceeE--EEEeecC----------ceeEEEEEeeCCCEEEEEEc-c---------CCcEEE
Q 038577          276 LDMVVVGFSNGVFGLYQMPDFVCI--HLLSISR----------EKITTAVFNELGNWLVFGCA-K---------LGQLLV  333 (860)
Q Consensus       276 ~~~l~~~~~~g~i~~~~~~~~~~~--~~~~~~~----------~~i~~~~~s~~~~~l~~~~~-~---------~g~i~v  333 (860)
                      +..++..+.++.+.++|+......  ..+....          .....++|+|+++.++++.. +         .+.|.+
T Consensus       211 g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~v  290 (361)
T 2oiz_A          211 KDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWV  290 (361)
T ss_dssp             SSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEE
T ss_pred             CCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEE
Confidence            778888888899999998654322  2221111          11223789999998888764 1         248999


Q ss_pred             EEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eeEEEeecCCCceEEEEEeeCCC
Q 038577          334 WEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSG--FCFVTFTEHTNAVTALHFMANNH  404 (860)
Q Consensus       334 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~  404 (860)
                      ||..+++.+..+..+.  +.+++|+|+|++|++++. +.|.+||..++  +.+..+..+......++++|+|+
T Consensus       291 iD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          291 MDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             EECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            9999999999988776  899999999999998887 99999999999  99988877888899999999985

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.83  E-value=4.6e-17  Score=177.27  Aligned_cols=334  Identities=13%  Similarity=0.062  Sum_probs=241.0

Q ss_pred             CCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc--CceEEEEecCcccC
Q 038577          274 RGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR--SESYILKQQGHYFD  351 (860)
Q Consensus       274 ~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~--~~~~~~~~~~~~~~  351 (860)
                      |.+..+++...++.|.++|..+++.+..+.... .+..+.|+|||+++++++. ++.|.+||+.  +++.+.++.... .
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~-dg~V~viD~~~~t~~~v~~i~~G~-~  241 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEPTTVAEIKIGS-E  241 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCCEEEEEECCS-E
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcC-CCeEEEEECCCCCCcEeEEEecCC-C
Confidence            444556667778999999999999998887654 4568999999999998875 5999999995  777777765433 3


Q ss_pred             eEEEEEc----CCCCEEEEEeC-CCcEEEEECCCCeeEEEeecC-----------CCceEEEEEeeCCCE-EEEEeCCCc
Q 038577          352 VNCLAYS----PDSQLLATGAD-DNKVKVWTVSSGFCFVTFTEH-----------TNAVTALHFMANNHS-LLSASLDGT  414 (860)
Q Consensus       352 v~~~~~s----~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~i~~~~~~~~-l~s~~~dg~  414 (860)
                      ...++|+    |||++++++.. ++.|.++|..+.+.+..+...           ...+..+..++++.. ++....+|.
T Consensus       242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~  321 (567)
T 1qks_A          242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK  321 (567)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence            6789999    69998887765 589999999999888876521           126788888887654 455566799


Q ss_pred             EEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC-----cccCeEEEEEcCCC
Q 038577          415 VRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG-----HEGPVHGLVFSPTN  489 (860)
Q Consensus       415 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~-----h~~~v~~l~~s~~~  489 (860)
                      |.++|..+.+.......+.......+.|+|+|++++++....+.|.++|+.+++.+..+..     |.+.-..+ ++|++
T Consensus       322 v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~  400 (567)
T 1qks_A          322 ILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTF  400 (567)
T ss_dssp             EEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTT
T ss_pred             EEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCC
Confidence            9999987765444333334446678899999999988887656999999999998876653     33222222 68875


Q ss_pred             CEE-EEEe-CCCcEEEEEccC-------CcceeEEcccCCCeEEEEEeeCCCEEEEEeC-------CCeEEEEeCCCC--
Q 038577          490 ATL-ASSS-WDKTVRLWNVFE-------GKGSVESFPHTHDVLTVVYRPDGRQLACSTL-------DGQIHFWDPLNG--  551 (860)
Q Consensus       490 ~~l-~s~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------dg~i~iwd~~~~--  551 (860)
                      ..+ +++. .++.|.++|..+       .+.+..+......-..+..+|++++|.+...       .+.|.++|+.+.  
T Consensus       401 g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~  480 (567)
T 1qks_A          401 GPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTG  480 (567)
T ss_dssp             EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCC
T ss_pred             CcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccc
Confidence            544 4443 468999999987       4444444433333355778999999998763       358999999876  


Q ss_pred             ---cee-EEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEec-----CCCeEEEEECCCceEEEEEeec
Q 038577          552 ---ELM-YTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGG-----SSKYICMYDVADQVLLRRFQIT  622 (860)
Q Consensus       552 ---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~-----~dg~v~vwd~~~~~~~~~~~~~  622 (860)
                         ... ..+....            .......++.+..+.|+|+|+++..+.     .++.|.|+|..++++++.++..
T Consensus       481 ~g~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~  548 (567)
T 1qks_A          481 DGSDPEFKTLPIAE------------WAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE  548 (567)
T ss_dssp             SSSCCCEEEECHHH------------HHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             cccCCCcEEecccc------------ccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCCC
Confidence               211 2222110            000111235689999999999887663     3799999999999999887744


Q ss_pred             c
Q 038577          623 H  623 (860)
Q Consensus       623 ~  623 (860)
                      .
T Consensus       549 ~  549 (567)
T 1qks_A          549 R  549 (567)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.82  E-value=1.7e-18  Score=184.59  Aligned_cols=299  Identities=9%  Similarity=0.001  Sum_probs=199.2

Q ss_pred             EEEECCCCcEEeeccCCccC-----eeEEEEcCCCCEEEEEcCC---CcEEEEEcccCeEEEEeecCCcee-EEEECCCC
Q 038577           35 SVTDLIKSKTVTLPVESSSN-----ICRIAVSPDGTFLLTVDEN---QRCHFINLHCHVVLHRVRFKYPVN-AILFSPNG  105 (860)
Q Consensus        35 ~v~d~~~~~~~~~~~~h~~~-----v~~va~spdg~~la~~~~d---~~i~vwd~~~~~~~~~~~~~~~v~-~~~fspdg  105 (860)
                      ...|..+++....+..+...     +.+++|||||++||++...   ..|.+||+.+++......+..... .+.|||||
T Consensus        13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg   92 (396)
T 3c5m_A           13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE   92 (396)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS
T ss_pred             eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC
Confidence            45588888776555444433     7889999999999887543   478889999888765544444433 48999999


Q ss_pred             CEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEE-------------------EEEcCCCCeEEEe-----e
Q 038577          106 KYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTA-------------------LNWSPDSNYLLVG-----S  160 (860)
Q Consensus       106 ~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~-------------------l~~s~d~~~l~s~-----~  160 (860)
                      ++|+++ .++.|++||+.+++.       ......+......                   +.|+|+++.++..     .
T Consensus        93 ~~l~~~~~~~~l~~~d~~~~~~-------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~  165 (396)
T 3c5m_A           93 RAFFYVKNELNLMKVDLETLEE-------QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTN  165 (396)
T ss_dssp             SEEEEEETTTEEEEEETTTCCE-------EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTC
T ss_pred             CEEEEEEcCCcEEEEECCCCCc-------EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCC
Confidence            999888 566899999988762       2223333332222                   3568888877654     3


Q ss_pred             cCCeEEEEeecccccCcccccceEeecCCCcEEEEEEcc-CCCCCccceEEEEcCC------ccEEEeeecCCCCCCccc
Q 038577          161 KDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSV-DKKTDKVNRIYTIARD------CYMFSWGFSGNDGKIDET  233 (860)
Q Consensus       161 ~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~~~~~~l~s~~~d------g~i~~w~~~~~~~~~~~~  233 (860)
                      .+..|.+||+.++      . ...+..+...+..+.|+| ++.     .|+..+.+      ..|.+|++.++..     
T Consensus       166 ~~~~l~~~d~~~g------~-~~~~~~~~~~~~~~~~sp~dg~-----~l~~~~~~~~~~~~~~l~~~d~~~~~~-----  228 (396)
T 3c5m_A          166 PTCRLIKVDIETG------E-LEVIHQDTAWLGHPIYRPFDDS-----TVGFCHEGPHDLVDARMWLVNEDGSNV-----  228 (396)
T ss_dssp             CCEEEEEEETTTC------C-EEEEEEESSCEEEEEEETTEEE-----EEEEEECSCSSSCSCCCEEEETTSCCC-----
T ss_pred             CcceEEEEECCCC------c-EEeeccCCcccccceECCCCCC-----EEEEEecCCCCCCCceEEEEECCCCce-----
Confidence            5678999998876      2 233445677889999999 777     67766544      3577777654321     


Q ss_pred             cCCCCCCCCCCCcceeeeEEeeeeccccCC-CCceEEEEecCCCCEEEEEEcC-----CeEEEEECCCceeEEEEeecCc
Q 038577          234 MEDSEPPSPGTPERRVKKWGLLRKDDFSQA-PSKVTACDYHRGLDMVVVGFSN-----GVFGLYQMPDFVCIHLLSISRE  307 (860)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~-----g~i~~~~~~~~~~~~~~~~~~~  307 (860)
                                             ....... ...+..+.|+|+|+.|+.++.+     +.|++||+.+++......... 
T Consensus       229 -----------------------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-  284 (396)
T 3c5m_A          229 -----------------------RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-  284 (396)
T ss_dssp             -----------------------EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-
T ss_pred             -----------------------eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-
Confidence                                   0111111 2357789999999988877554     459999998876544332222 


Q ss_pred             eeEEEEEee-CCCEEEEEEc---------------cCCcEEEEEccCceEEEEecCccc-----------CeEEEEEcCC
Q 038577          308 KITTAVFNE-LGNWLVFGCA---------------KLGQLLVWEWRSESYILKQQGHYF-----------DVNCLAYSPD  360 (860)
Q Consensus       308 ~i~~~~~s~-~~~~l~~~~~---------------~~g~i~v~d~~~~~~~~~~~~~~~-----------~v~~~~~s~~  360 (860)
                       .. +.|+| +|+.++++..               .++.|++||+.++.... +..+..           .+..++|+|+
T Consensus       285 -~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~s~d  361 (396)
T 3c5m_A          285 -CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQK-LCKHSTSWDVLDGDRQITHPHPSFTPN  361 (396)
T ss_dssp             -EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCE-EEECCCCCCCBTTBSSTTCCCCEECTT
T ss_pred             -CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEE-ccCCCCccccccccccCCCCCceEccC
Confidence             23 89999 9998887542               23789999998876432 333333           2566789999


Q ss_pred             CCEEEEEeC-CCc--EEEEECCCCeeE
Q 038577          361 SQLLATGAD-DNK--VKVWTVSSGFCF  384 (860)
Q Consensus       361 ~~~l~~~~~-dg~--i~iwd~~~~~~~  384 (860)
                      |+.|+.++. ++.  |..+++.++...
T Consensus       362 g~~l~~~s~~~~~~~l~~~~~~~~~~~  388 (396)
T 3c5m_A          362 DDGVLFTSDFEGVPAIYIADVPESYKH  388 (396)
T ss_dssp             SSEEEEEECTTSSCEEEEEECCTTCC-
T ss_pred             CCeEEEEecCCCCceEEEEEEcccccc
Confidence            998887765 444  444455555443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.82  E-value=4.5e-19  Score=188.98  Aligned_cols=310  Identities=8%  Similarity=-0.033  Sum_probs=202.3

Q ss_pred             EEECCCceeEEEEeecCce-----eEEEEEeeCCCEEEEEEccC--CcEEEEEccCceEEEEecCcccCeEEEEEcCCCC
Q 038577          290 LYQMPDFVCIHLLSISREK-----ITTAVFNELGNWLVFGCAKL--GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQ  362 (860)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~-----i~~~~~s~~~~~l~~~~~~~--g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~  362 (860)
                      ..|..++..+..+..+...     +..++|+|||++++++...+  ..+.+||+.+++.......+......+.|+|||+
T Consensus        14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~   93 (396)
T 3c5m_A           14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDER   93 (396)
T ss_dssp             EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSS
T ss_pred             eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCC
Confidence            3455666666666544333     67789999999999887653  3688889988876544333333233478999999


Q ss_pred             EEEEEeCCCcEEEEECCCCeeEEEeecCCCceEE-------------------EEEeeCCCEEEEE-----eCCCcEEEE
Q 038577          363 LLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTA-------------------LHFMANNHSLLSA-----SLDGTVRAW  418 (860)
Q Consensus       363 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-------------------i~~~~~~~~l~s~-----~~dg~i~~w  418 (860)
                      .|+.++.++.|++||+.+++.......+......                   +.|+|+++.++.+     ..+..|.+|
T Consensus        94 ~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~  173 (396)
T 3c5m_A           94 AFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKV  173 (396)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEE
T ss_pred             EEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEE
Confidence            9999999999999999988776655544442222                   2456666655543     355689999


Q ss_pred             EccccceeeEeeCCCCCcEEEEEECC-CCCEEEEEecCC-----CeEEEEECCCCceEEEecCc-ccCeEEEEEcCCCCE
Q 038577          419 DLFRYRNFRTFTTPSSRQFVSLASDQ-SGEVICAGTLDS-----FEIFVWSMKTGRLLDILSGH-EGPVHGLVFSPTNAT  491 (860)
Q Consensus       419 d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~-----~~i~v~d~~~~~~~~~~~~h-~~~v~~l~~s~~~~~  491 (860)
                      |+.+++......  ....+..+.++| ++..++....+.     ..|++||+.+++........ ...+..++|+|||++
T Consensus       174 d~~~g~~~~~~~--~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~  251 (396)
T 3c5m_A          174 DIETGELEVIHQ--DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSA  251 (396)
T ss_dssp             ETTTCCEEEEEE--ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSC
T ss_pred             ECCCCcEEeecc--CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCE
Confidence            998877655443  334678899999 788777665432     26999998876654433321 235788999999998


Q ss_pred             EEEEeCC-----CcEEEEEccCCcceeEEcccCCCeEEEEEee-CCCEEEEEe----------------CCCeEEEEeCC
Q 038577          492 LASSSWD-----KTVRLWNVFEGKGSVESFPHTHDVLTVVYRP-DGRQLACST----------------LDGQIHFWDPL  549 (860)
Q Consensus       492 l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~----------------~dg~i~iwd~~  549 (860)
                      |+.++.+     +.|++||+.+++... +.... ... +.|+| ||+++++++                .++.|++||+.
T Consensus       252 l~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~  328 (396)
T 3c5m_A          252 MAYVSYFKGQTDRVIYKANPETLENEE-VMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK  328 (396)
T ss_dssp             EEEEEEETTTCCEEEEEECTTTCCEEE-EEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETT
T ss_pred             EEEEecCCCCccceEEEEECCCCCeEE-eeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecc
Confidence            8777654     449999998876332 22222 233 89999 999888765                34789999998


Q ss_pred             CCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecC-CCeEEEE--ECCCce
Q 038577          550 NGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGS-SKYICMY--DVADQV  614 (860)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~v~vw--d~~~~~  614 (860)
                      +++.. .+..+....+.         ........+..++|+|||++|+..+. ++...+|  ++.+++
T Consensus       329 ~~~~~-~l~~~~~~~~~---------~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~  386 (396)
T 3c5m_A          329 AKSAQ-KLCKHSTSWDV---------LDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY  386 (396)
T ss_dssp             TTBCC-EEEECCCCCCC---------BTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred             cCceE-EccCCCCcccc---------ccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence            88753 33322210000         00000011456789999998887664 4544444  454443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.81  E-value=1.1e-18  Score=185.80  Aligned_cols=220  Identities=15%  Similarity=0.169  Sum_probs=166.7

Q ss_pred             CcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccce----------ee----EeeCCCCCc
Q 038577          371 NKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRN----------FR----TFTTPSSRQ  436 (860)
Q Consensus       371 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~----------~~----~~~~~~~~~  436 (860)
                      +.+++|+....       .....+..+++++++.++++++.++ +++|+......          ..    ....+....
T Consensus        23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (434)
T 2oit_A           23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP   94 (434)
T ss_dssp             CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred             eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence            46777764311       1344678899999999999999887 88887643211          00    011223456


Q ss_pred             EEEEEECCCCCEEE----EEecCCCeEEEEECCCC--------ce---EEEecCcccCeEEEEEcCC-CCEEEEEeCCCc
Q 038577          437 FVSLASDQSGEVIC----AGTLDSFEIFVWSMKTG--------RL---LDILSGHEGPVHGLVFSPT-NATLASSSWDKT  500 (860)
Q Consensus       437 ~~~~~~~~~~~~l~----~~~~~~~~i~v~d~~~~--------~~---~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~  500 (860)
                      +.+++|+|+|++|+    +++.|+ .|++||+.++        +.   ...+.+|...|.+++|+|+ +.+|++++.||+
T Consensus        95 v~~l~~spdg~~lav~~~sgs~d~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~  173 (434)
T 2oit_A           95 IHHLALSCDNLTLSACMMSSEYGS-IIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS  173 (434)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTEE-EEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred             ccEEEEcCCCCEEEEEEeccCCCc-eEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence            99999999999999    455566 9999998765        22   4566789999999999998 889999999999


Q ss_pred             EEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCC
Q 038577          501 VRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSS  580 (860)
Q Consensus       501 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  580 (860)
                      |++||++++........|...|.+++|+|+|++|++|+.||.|++||++ ++....+..+....             ..+
T Consensus       174 v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~-------------~~~  239 (434)
T 2oit_A          174 IAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYE-------------SDH  239 (434)
T ss_dssp             EEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCC-------------TTS
T ss_pred             EEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccC-------------CCC
Confidence            9999999886666666788999999999999999999999999999998 66666665443210             011


Q ss_pred             CCcEEEEEEecCCCEEEEec-CCC------eEEEEECCCc
Q 038577          581 GKCFTTLCYSADGSYILAGG-SSK------YICMYDVADQ  613 (860)
Q Consensus       581 ~~~i~~l~~s~~g~~l~~~~-~dg------~v~vwd~~~~  613 (860)
                      ...+.+++|++++.++++.+ .+|      .+++|++...
T Consensus       240 ~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          240 PVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             ceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            23589999999998886543 333      4899999865

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.80  E-value=6.9e-16  Score=168.00  Aligned_cols=323  Identities=10%  Similarity=-0.005  Sum_probs=238.6

Q ss_pred             eEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCe
Q 038577          208 RIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGV  287 (860)
Q Consensus       208 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~  287 (860)
                      .+++...++.|.++|..++..                      ...+       .....+..+.++|+|+++++++.++.
T Consensus       169 ~~V~~~~~~~V~viD~~t~~v----------------------~~~i-------~~g~~p~~v~~SpDGr~lyv~~~dg~  219 (567)
T 1qks_A          169 FSVTLRDAGQIALIDGSTYEI----------------------KTVL-------DTGYAVHISRLSASGRYLFVIGRDGK  219 (567)
T ss_dssp             EEEEETTTTEEEEEETTTCCE----------------------EEEE-------ECSSCEEEEEECTTSCEEEEEETTSE
T ss_pred             EEEEeCCCCeEEEEECCCCeE----------------------EEEE-------eCCCCccceEECCCCCEEEEEcCCCe
Confidence            677778899999999987532                      1111       12235678999999999999999999


Q ss_pred             EEEEECC--CceeEEEEeecCceeEEEEEe----eCCCEEEEEEccCCcEEEEEccCceEEEEecCc-----------cc
Q 038577          288 FGLYQMP--DFVCIHLLSISREKITTAVFN----ELGNWLVFGCAKLGQLLVWEWRSESYILKQQGH-----------YF  350 (860)
Q Consensus       288 i~~~~~~--~~~~~~~~~~~~~~i~~~~~s----~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~-----------~~  350 (860)
                      |.+||+.  +++.+..+.... ....++|+    |||++++++....+.+.++|..+.+.+..+...           ..
T Consensus       220 V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~  298 (567)
T 1qks_A          220 VNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP  298 (567)
T ss_dssp             EEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCC
T ss_pred             EEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCC
Confidence            9999995  777777777654 46799999    699999999998899999999998888776421           12


Q ss_pred             CeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeeEEE-eecCCCceEEEEEeeCCCEEEEEe-CCCcEEEEEccccceee
Q 038577          351 DVNCLAYSPDSQLLA-TGADDNKVKVWTVSSGFCFVT-FTEHTNAVTALHFMANNHSLLSAS-LDGTVRAWDLFRYRNFR  427 (860)
Q Consensus       351 ~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~  427 (860)
                      .+..+..++++..++ ....+|.|.++|..+...+.. .........++.|+|++++++++. .++.|.++|+.+++...
T Consensus       299 rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~  378 (567)
T 1qks_A          299 RVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVA  378 (567)
T ss_dssp             CEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             ceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEE
Confidence            577888898876544 445579999999876543221 123445677899999999887655 67899999999998877


Q ss_pred             EeeC-C---CCCcEEEEEECCCCCEEE-EEecCCCeEEEEECCC-------CceEEEecCcccCeEEEEEcCCCCEEEEE
Q 038577          428 TFTT-P---SSRQFVSLASDQSGEVIC-AGTLDSFEIFVWSMKT-------GRLLDILSGHEGPVHGLVFSPTNATLASS  495 (860)
Q Consensus       428 ~~~~-~---~~~~~~~~~~~~~~~~l~-~~~~~~~~i~v~d~~~-------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~  495 (860)
                      .+.. .   +...-.. .++|++..+. ++....+.|.++|..+       .+.++.+......-..+..+|+++++.+.
T Consensus       379 ~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~  457 (567)
T 1qks_A          379 IEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVD  457 (567)
T ss_dssp             EEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEE
T ss_pred             EEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEe
Confidence            7765 2   2211222 2678755554 4433334999999988       67888887654444557899999998886


Q ss_pred             eC-------CCcEEEEEccCC-----cceeEEc---------ccCCCeEEEEEeeCCCEEEEEe-----CCCeEEEEeCC
Q 038577          496 SW-------DKTVRLWNVFEG-----KGSVESF---------PHTHDVLTVVYRPDGRQLACST-----LDGQIHFWDPL  549 (860)
Q Consensus       496 ~~-------dg~i~iwd~~~~-----~~~~~~~---------~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~iwd~~  549 (860)
                      ..       .+.|.++|+.+.     .......         .....+..+.|+|+|+.+.++.     .++.|.|+|..
T Consensus       458 ~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~  537 (567)
T 1qks_A          458 ATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDK  537 (567)
T ss_dssp             CTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETT
T ss_pred             cCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECC
Confidence            63       358999999877     2221222         1245789999999999887763     37899999999


Q ss_pred             CCceeEEEeccc
Q 038577          550 NGELMYTIEGRR  561 (860)
Q Consensus       550 ~~~~~~~~~~~~  561 (860)
                      +++++..++...
T Consensus       538 t~~~~~~i~~~~  549 (567)
T 1qks_A          538 TLELKHVIKDER  549 (567)
T ss_dssp             TTEEEEEECCTT
T ss_pred             CceEEEEeCCCc
Confidence            999998887643

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.78  E-value=2.5e-16  Score=158.85  Aligned_cols=242  Identities=13%  Similarity=0.244  Sum_probs=183.9

Q ss_pred             CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeec------CCCceEEEEEe-eCCCEEEEEeC-CCcEEEE
Q 038577          347 GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTE------HTNAVTALHFM-ANNHSLLSASL-DGTVRAW  418 (860)
Q Consensus       347 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~v~~i~~~-~~~~~l~s~~~-dg~i~~w  418 (860)
                      ++...+.++++++++.++++...++.|.+||.. +..+..+..      +...+.++++. ++++.+++... ++.|.+|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            455678999999999988888889999999987 666665532      34578999995 66665555533 7899999


Q ss_pred             EccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec--CcccCeEEEEEcCCCCEEEEEe
Q 038577          419 DLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS--GHEGPVHGLVFSPTNATLASSS  496 (860)
Q Consensus       419 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~  496 (860)
                      | .+++....+.......+..++++++|+++++...++ .|++||.. ++.+..+.  ++...+.+++++|+|+++++..
T Consensus       106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~-~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~  182 (286)
T 1q7f_A          106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVM-RVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN  182 (286)
T ss_dssp             C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTT-EEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred             C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCC-EEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence            9 567777666655555789999999999776666565 99999964 66666654  3556789999999999888877


Q ss_pred             CCCcEEEEEccCCcceeEEccc--CCCeEEEEEeeCCCEEEEEeCCC-eEEEEeCCCCceeEEEecccccCCCccccccc
Q 038577          497 WDKTVRLWNVFEGKGSVESFPH--THDVLTVVYRPDGRQLACSTLDG-QIHFWDPLNGELMYTIEGRRDISGGRLMTDRR  573 (860)
Q Consensus       497 ~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  573 (860)
                      .++.|++||.. ++....+..+  ...+..++++|+|+++++...++ .|.+||. +++.+..+..+..           
T Consensus       183 ~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~-----------  249 (286)
T 1q7f_A          183 RAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVK-----------  249 (286)
T ss_dssp             GGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSC-----------
T ss_pred             CCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCC-----------
Confidence            88999999974 4434444322  36789999999999888887776 9999995 5777776655432           


Q ss_pred             cccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCc
Q 038577          574 SAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQ  613 (860)
Q Consensus       574 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~  613 (860)
                             ...+.+++++|+|+++++ +.++.|++|++...
T Consensus       250 -------~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          250 -------HAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             -------CSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             -------CCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence                   123789999999987777 56899999998654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.78  E-value=1.9e-16  Score=165.09  Aligned_cols=264  Identities=12%  Similarity=0.125  Sum_probs=180.8

Q ss_pred             cEEEeCCCEEEeee----------CCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCC---C--cEEEEEc
Q 038577           17 NAVLSQNTKLISPV----------GNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDEN---Q--RCHFINL   81 (860)
Q Consensus        17 ~~~~sdg~~l~~~~----------~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d---~--~i~vwd~   81 (860)
                      ...+ ||+++++..          .+.|.+||+.+++...+     ..+..++|||||++||+++.+   +  .|.+||+
T Consensus        19 ~~~~-dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~   92 (347)
T 2gop_A           19 DPRT-KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADL   92 (347)
T ss_dssp             EEEE-ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEET
T ss_pred             cceE-CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEEC
Confidence            3455 999998853          35699999999887555     568899999999999987653   2  4888899


Q ss_pred             ccCeEEEEeecCCceeEEEECCCCCEEEEEe----------------------------CCeEEEEeCCCCCcccceeEE
Q 038577           82 HCHVVLHRVRFKYPVNAILFSPNGKYIAVGT----------------------------GKLVQIWRSPGFKKEVFAFEL  133 (860)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~fspdg~~la~~~----------------------------~~~i~iwd~~~~~~~~~~~~~  133 (860)
                      .+++......... +.+++|+|||+.|+++.                            ...|++||+.+++.       
T Consensus        93 ~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~-------  164 (347)
T 2gop_A           93 ETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV-------  164 (347)
T ss_dssp             TTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE-------
T ss_pred             CCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE-------
Confidence            9888777666555 99999999999999883                            25789999987752       


Q ss_pred             EEEeeccCCCeEEEEEcCCCCeEEEeecCC-------eEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCcc
Q 038577          134 IRTLADCNDKVTALNWSPDSNYLLVGSKDL-------AVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKV  206 (860)
Q Consensus       134 ~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg-------~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~  206 (860)
                      ...+.. . .+..++|+||| +++++..++       ...+|.++++       ....+..+ ..+..+  +|+|+    
T Consensus       165 ~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-------~~~~l~~~-~~~~~~--spdg~----  227 (347)
T 2gop_A          165 IEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG-------KEEKMFEK-VSFYAV--DSDGE----  227 (347)
T ss_dssp             EEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT-------EEEEEEEE-ESEEEE--EECSS----
T ss_pred             EeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC-------ceEEeccC-cceeeE--CCCCC----
Confidence            133333 3 78899999999 777775542       4566665533       23334444 555544  99998    


Q ss_pred             ceEEEEcCC--------ccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEE-EEecCCCC
Q 038577          207 NRIYTIARD--------CYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTA-CDYHRGLD  277 (860)
Q Consensus       207 ~~l~s~~~d--------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~  277 (860)
                       +|+.++.+        ..|.+|+  ++..                            ......+...+.. +.|+ ++ 
T Consensus       228 -~l~~~~~~~~~~~~~~~~l~~~d--~~~~----------------------------~~l~~~~~~~~~~~~~~s-dg-  274 (347)
T 2gop_A          228 -RILLYGKPEKKYMSEHNKLYIYD--GKEV----------------------------MGILDEVDRGVGQAKIKD-GK-  274 (347)
T ss_dssp             -CEEEEECCSSSCCCSSCEEEEEC--SSCE----------------------------EESSTTCCSEEEEEEEET-TE-
T ss_pred             -EEEEEEccccCCccccceEEEEC--CCce----------------------------EeccccCCcccCCccEEc-Cc-
Confidence             88877654        3577776  3211                            1122334456775 8899 88 


Q ss_pred             EEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCccc
Q 038577          278 MVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYF  350 (860)
Q Consensus       278 ~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~  350 (860)
                      +++++..++.+++| +.+++. ..+..+...+.+++|+|  ..++++........+|.+. ++ ...+..|..
T Consensus       275 ~~~~~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~  341 (347)
T 2gop_A          275 VYFTLFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYND  341 (347)
T ss_dssp             EEEEEEETTEEEEE-EESSSE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTTS
T ss_pred             EEEEEecCCcEEEE-EcCCce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccccH
Confidence            88899999999999 875554 33444567899999999  5555555442223666655 43 333444443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.78  E-value=2.3e-17  Score=188.45  Aligned_cols=296  Identities=9%  Similarity=-0.029  Sum_probs=206.4

Q ss_pred             cccCCCCceEEEEecCCCCEEEEE--EcCCeEEEEECCCceeEEEEeecCceeE---------EEEEe--eCCCE-EEEE
Q 038577          259 DFSQAPSKVTACDYHRGLDMVVVG--FSNGVFGLYQMPDFVCIHLLSISREKIT---------TAVFN--ELGNW-LVFG  324 (860)
Q Consensus       259 ~~~~~~~~v~~~~~~~~~~~l~~~--~~~g~i~~~~~~~~~~~~~~~~~~~~i~---------~~~~s--~~~~~-l~~~  324 (860)
                      .+..+...+..+++++++-.++..  ..++...+|....+.....+..+...+.         ...|+  |||+. ++++
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~   97 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT   97 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence            345677889999999876555555  4478899998655555666666655555         56666  99999 8887


Q ss_pred             EccCCcEEEEEcc--C-ceEEEEecC-----cccCeEEEEEcCCCCEEEEEeCC----------CcEEEEECCC------
Q 038577          325 CAKLGQLLVWEWR--S-ESYILKQQG-----HYFDVNCLAYSPDSQLLATGADD----------NKVKVWTVSS------  380 (860)
Q Consensus       325 ~~~~g~i~v~d~~--~-~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~d----------g~i~iwd~~~------  380 (860)
                      ...+..|.+++..  . +. ...+..     |...+..++|+|||+.|++++.+          ..|++||+.+      
T Consensus        98 ~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  176 (662)
T 3azo_A           98 HFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR  176 (662)
T ss_dssp             BTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred             ECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence            7656778888876  3 33 334444     56678899999999999998876          5899999987      


Q ss_pred             CeeEEEee-cCCCceEEEEEeeCCCEEEEEeCCC--------cEEEEEcc-cc--ceeeEeeCCCCCcEEEEEECCCCCE
Q 038577          381 GFCFVTFT-EHTNAVTALHFMANNHSLLSASLDG--------TVRAWDLF-RY--RNFRTFTTPSSRQFVSLASDQSGEV  448 (860)
Q Consensus       381 ~~~~~~~~-~~~~~v~~i~~~~~~~~l~s~~~dg--------~i~~wd~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~  448 (860)
                      +.. ..+. .+...+..++|+|||++|+.++.++        .|++||+. ++  .....+.......+..+.|+|||++
T Consensus       177 ~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l  255 (662)
T 3azo_A          177 SAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL  255 (662)
T ss_dssp             GGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred             Cce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence            554 4555 5667788899999999999877553        79999998 45  2344444443457889999999996


Q ss_pred             EEEEecCC-CeEEEEECCCCceEEEecCcccC--------eEEEEEcCCCCEEEEEeCCCcEEEE--EccCCcceeEEcc
Q 038577          449 ICAGTLDS-FEIFVWSMKTGRLLDILSGHEGP--------VHGLVFSPTNATLASSSWDKTVRLW--NVFEGKGSVESFP  517 (860)
Q Consensus       449 l~~~~~~~-~~i~v~d~~~~~~~~~~~~h~~~--------v~~l~~s~~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~  517 (860)
                      ++++..++ ..|++||+.+++.......+...        +..++|+|+++++++++. +.+++|  |+.+++ ...+..
T Consensus       256 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~  333 (662)
T 3azo_A          256 IVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAG  333 (662)
T ss_dssp             EEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCS
T ss_pred             EEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecC
Confidence            66665543 16777887777766555444332        567899999999999998 999999  544444 455555


Q ss_pred             cCCCeEEEEEeeCCCEE--EEEeCCC--eEEEEeCCCCceeEEEec
Q 038577          518 HTHDVLTVVYRPDGRQL--ACSTLDG--QIHFWDPLNGELMYTIEG  559 (860)
Q Consensus       518 ~~~~v~~~~~s~~~~~l--~~~~~dg--~i~iwd~~~~~~~~~~~~  559 (860)
                      +...+..+ +++++..+  ++++.+.  .|.+||+.+++.......
T Consensus       334 ~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~  378 (662)
T 3azo_A          334 PWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGAR  378 (662)
T ss_dssp             SCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESC
T ss_pred             CCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecC
Confidence            66667666 15555433  3344443  466677777775443333

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.77  E-value=5.1e-17  Score=185.60  Aligned_cols=325  Identities=11%  Similarity=0.012  Sum_probs=211.9

Q ss_pred             EeeccCCCeEEEEEcCCCCeEEEe--ecCCeEEEEeecccccCcccccceEeecCCCcEE---------EEEEc--cCCC
Q 038577          136 TLADCNDKVTALNWSPDSNYLLVG--SKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVV---------GCFFS--VDKK  202 (860)
Q Consensus       136 ~~~~h~~~v~~l~~s~d~~~l~s~--~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~---------~~~~~--~~~~  202 (860)
                      .+.+|...+..++|++++-+++..  +.++...+|....+      .....+..|...+.         ...|+  ||++
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~   91 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD------GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGG   91 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT------SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSS
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC------CCcceeCCCCccccccccccCCccceeeeecCCC
Confidence            456788999999999886666666  55889999997444      34556666665655         55565  9998


Q ss_pred             CCccce-EEEEcC-CccEEEeeec--C-CCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccC-----CCCceEEEEe
Q 038577          203 TDKVNR-IYTIAR-DCYMFSWGFS--G-NDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQ-----APSKVTACDY  272 (860)
Q Consensus       203 ~~~~~~-l~s~~~-dg~i~~w~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~  272 (860)
                           . |+..+. +..|.++++.  + +..                             ..+..     +...+..++|
T Consensus        92 -----~~la~~~~~~~~l~~~~~~~~g~~~~-----------------------------~~l~~~~~~~~~~~~~~~~~  137 (662)
T 3azo_A           92 -----PLLVFTHFGDQRLYAFEPDAPGGAVP-----------------------------RPLTPVSAVGGGLRWADPVL  137 (662)
T ss_dssp             -----CEEEEEBTTTCCEEEECTTSTTCCCC-----------------------------EECSCCCCSTTCEEEEEEEE
T ss_pred             -----eEEEEEECCCCeEEEEcCCCCCCCCC-----------------------------EeccCCccCCCCccccCcEE
Confidence                 8 776654 4566666654  2 211                             11111     4456889999


Q ss_pred             cCCCCEEEEEEcC----------CeEEEEECCC------ceeEEEEe-ecCceeEEEEEeeCCCEEEEEEccC-------
Q 038577          273 HRGLDMVVVGFSN----------GVFGLYQMPD------FVCIHLLS-ISREKITTAVFNELGNWLVFGCAKL-------  328 (860)
Q Consensus       273 ~~~~~~l~~~~~~----------g~i~~~~~~~------~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~-------  328 (860)
                      +|||+.|++++.+          ..|++|++.+      ++. ..+. .+...+..++|+|||++|++++.+.       
T Consensus       138 spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~  216 (662)
T 3azo_A          138 LPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEG  216 (662)
T ss_dssp             ETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTC
T ss_pred             CCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCC
Confidence            9999999988876          5899999987      544 4444 5556788899999999999887553       


Q ss_pred             CcEEEEEcc-Cc---eEEEEecCcccCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeeEEEeecCCCc--------e
Q 038577          329 GQLLVWEWR-SE---SYILKQQGHYFDVNCLAYSPDSQLLATGADDN--KVKVWTVSSGFCFVTFTEHTNA--------V  394 (860)
Q Consensus       329 g~i~v~d~~-~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~--------v  394 (860)
                      ..|++||+. ++   ........|...+..++|+|||++++++..++  .|.+||..+++.......+...        +
T Consensus       217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~  296 (662)
T 3azo_A          217 TELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGM  296 (662)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTC
T ss_pred             cEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccC
Confidence            479999998 56   44443445567899999999999888888888  5666676666654433333222        5


Q ss_pred             EEEEEeeCCCEEEEEeCCCcEEEEEc--cccceeeEeeCCCCCcEEEEEECCCCCEEE--EEecCC-CeEEEEECCCCce
Q 038577          395 TALHFMANNHSLLSASLDGTVRAWDL--FRYRNFRTFTTPSSRQFVSLASDQSGEVIC--AGTLDS-FEIFVWSMKTGRL  469 (860)
Q Consensus       395 ~~i~~~~~~~~l~s~~~dg~i~~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~-~~i~v~d~~~~~~  469 (860)
                      ..++|+++++.+++++. +.+++|.+  .+++ .+.+..+ ...+..+. ++++..++  .++.+. ..|+++|+.+++.
T Consensus       297 ~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~-~~~~~~~~-s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~  372 (662)
T 3azo_A          297 RWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGP-WTEWAATL-TVSGTRAVGVAASPRTAYEVVELDTVTGRA  372 (662)
T ss_dssp             CSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSS-CCEEEEEE-EEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             ceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCC-CCeEEEEE-ecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence            67889999999999988 99999944  4444 4555443 33455551 44444433  333332 2577778878876


Q ss_pred             EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038577          470 LDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN  505 (860)
Q Consensus       470 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  505 (860)
                      ......+...+....+++.....+.+..+..+..|-
T Consensus       373 ~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~  408 (662)
T 3azo_A          373 RTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHI  408 (662)
T ss_dssp             EEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEE
T ss_pred             EEeecCCcccCCccccCcceEEEEEcCCCCEEEEEE
Confidence            555454543333333333332333322233455444

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.77  E-value=3e-16  Score=163.51  Aligned_cols=268  Identities=10%  Similarity=0.069  Sum_probs=191.6

Q ss_pred             ceEEEEecCCCCEEEEEE---------cCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccC--C--cEE
Q 038577          266 KVTACDYHRGLDMVVVGF---------SNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKL--G--QLL  332 (860)
Q Consensus       266 ~v~~~~~~~~~~~l~~~~---------~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~--g--~i~  332 (860)
                      .+....+  +|+.++...         .++.|.+|++.+++... +    ..+..++|+|||+.+++.....  +  .|.
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~   88 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW   88 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence            4566677  888887643         25789999998876543 3    5678899999999999887653  3  488


Q ss_pred             EEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCC---------------------------CcEEEEECCCCeeEE
Q 038577          333 VWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADD---------------------------NKVKVWTVSSGFCFV  385 (860)
Q Consensus       333 v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------------------------g~i~iwd~~~~~~~~  385 (860)
                      +|++.+++.......+ . +..++|+|||+.|+.++.+                           ..|++||+.+++.+.
T Consensus        89 ~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~  166 (347)
T 2gop_A           89 VADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIE  166 (347)
T ss_dssp             EEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEE
T ss_pred             EEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEe
Confidence            8888887765544333 3 8999999999999887642                           579999999888745


Q ss_pred             EeecCCCceEEEEEeeCCCEEEEEeCCC-------cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC--
Q 038577          386 TFTEHTNAVTALHFMANNHSLLSASLDG-------TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS--  456 (860)
Q Consensus       386 ~~~~~~~~v~~i~~~~~~~~l~s~~~dg-------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--  456 (860)
                      .+.. . .+..+.|+|+| .++++..++       ...+|.+.+++ ...+...  ..+..+  +|+|+.++..+.+.  
T Consensus       167 ~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~--~~~~~~--spdg~~l~~~~~~~~~  238 (347)
T 2gop_A          167 EFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK--VSFYAV--DSDGERILLYGKPEKK  238 (347)
T ss_dssp             EEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE--ESEEEE--EECSSCEEEEECCSSS
T ss_pred             eecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC--cceeeE--CCCCCEEEEEEccccC
Confidence            5544 3 78899999999 777776542       44555554443 3333322  233433  99999888776442  


Q ss_pred             -----CeEEEEECCCCceEEEecCcccCeEE-EEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeC
Q 038577          457 -----FEIFVWSMKTGRLLDILSGHEGPVHG-LVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPD  530 (860)
Q Consensus       457 -----~~i~v~d~~~~~~~~~~~~h~~~v~~-l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  530 (860)
                           ..|++||  +++......+|...+.. +.|+ ++ ++++++.++.+++| +.+++ ...+..+...+.+++|+| 
T Consensus       239 ~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~-~~~~~~~~~~v~~~~~s~-  311 (347)
T 2gop_A          239 YMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE-IKPIAKGRHWIMGFDVDE-  311 (347)
T ss_dssp             CCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSS-EEEEECSSSEEEEEEESS-
T ss_pred             CccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc-eEEEecCCCeEEeeeeeC-
Confidence                 3788998  66666666667778886 9999 88 88999999999999 88554 455556677899999999 


Q ss_pred             CCEEEEEeCCCeE-EEEeCCCCceeEEEecc
Q 038577          531 GRQLACSTLDGQI-HFWDPLNGELMYTIEGR  560 (860)
Q Consensus       531 ~~~l~~~~~dg~i-~iwd~~~~~~~~~~~~~  560 (860)
                       .++++++.++.. .+|.++ ++ ...+..+
T Consensus       312 -~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~  339 (347)
T 2gop_A          312 -IVVYLKETATRLRELFTWD-GE-EKQLTDY  339 (347)
T ss_dssp             -SEEEEEECSSSCCEEEEES-SS-EEECCCT
T ss_pred             -cEEEEEcCCCChHHheEeC-Cc-EEEeccc
Confidence             677777777654 666665 44 3334443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.76  E-value=3.7e-16  Score=160.67  Aligned_cols=244  Identities=13%  Similarity=0.122  Sum_probs=185.1

Q ss_pred             ccCeEEEEEcCCCCEEEEEeCC------------------------CcEEEEECCCCeeEEEee-cCCCceEEEEEeeCC
Q 038577          349 YFDVNCLAYSPDSQLLATGADD------------------------NKVKVWTVSSGFCFVTFT-EHTNAVTALHFMANN  403 (860)
Q Consensus       349 ~~~v~~~~~s~~~~~l~~~~~d------------------------g~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~  403 (860)
                      ...+.+++++|+|+++++...+                        +.|.+||..+++.+..+. .+-..+..+++++++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4568999999999999888777                        479999998888877664 344678999999999


Q ss_pred             CEEEEEeCCCcEEEEEccccc-eeeEee--------CCCCCcEEEEEECC-CCCEEEEEe-cCCCeEEEEECCCCceEEE
Q 038577          404 HSLLSASLDGTVRAWDLFRYR-NFRTFT--------TPSSRQFVSLASDQ-SGEVICAGT-LDSFEIFVWSMKTGRLLDI  472 (860)
Q Consensus       404 ~~l~s~~~dg~i~~wd~~~~~-~~~~~~--------~~~~~~~~~~~~~~-~~~~l~~~~-~~~~~i~v~d~~~~~~~~~  472 (860)
                      +.+++...++.|+.|+..... .+..+.        .........++++| ++.++++.+ .++ .|++|| .+++.+..
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~-~I~~~~-~~g~~~~~  180 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS-RIVQFS-PSGKFVTQ  180 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC-EEEEEC-TTSCEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC-eEEEEc-CCCCEEEE
Confidence            988888889999999985442 344442        12233578999999 777777765 455 999999 56777777


Q ss_pred             ecC----------cccCeEEEEEcCC-CCEEEEEeCCCcEEEEEccCCcceeEEc--ccCCCeEEEEEeeCCCEEEEE--
Q 038577          473 LSG----------HEGPVHGLVFSPT-NATLASSSWDKTVRLWNVFEGKGSVESF--PHTHDVLTVVYRPDGRQLACS--  537 (860)
Q Consensus       473 ~~~----------h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~--  537 (860)
                      +..          +......++++|+ +.++++...++.|++||..+++....+.  .+...+.+++|+| +..+++.  
T Consensus       181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~  259 (329)
T 3fvz_A          181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGK  259 (329)
T ss_dssp             ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECC
T ss_pred             eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCC
Confidence            642          2344899999998 7777777788999999998777555553  4566788999999 4333333  


Q ss_pred             -----eCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 038577          538 -----TLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVAD  612 (860)
Q Consensus       538 -----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~  612 (860)
                           ..+..|++||..+++.+..+.....                 +...+..++++|+|..+++...++.|++|++..
T Consensus       260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~-----------------~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          260 PYFGDQEPVQGFVMNFSSGEIIDVFKPVRK-----------------HFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CCTTCSCCCCEEEEETTTCCEEEEECCSSS-----------------CCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             EEeccCCCcEEEEEEcCCCeEEEEEcCCCC-----------------ccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence                 3345899999999998888742111                 123489999999998888888899999999754

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.75  E-value=1.5e-11  Score=142.89  Aligned_cols=514  Identities=8%  Similarity=0.041  Sum_probs=321.7

Q ss_pred             CCCEEEeeeCCeEEEEECCCCcEEeeccC-----CccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeec-CC-
Q 038577           22 QNTKLISPVGNRVSVTDLIKSKTVTLPVE-----SSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRF-KY-   94 (860)
Q Consensus        22 dg~~l~~~~~~~i~v~d~~~~~~~~~~~~-----h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~-~~-   94 (860)
                      +| +|=.|..+-+..||-.+-+.......     ....|.++...++|.+.+. +. +-+..||..+++....... .. 
T Consensus        53 ~G-~lWigT~~GL~ryDG~~f~~~~~~~~~~~~l~~n~I~~i~~d~~g~lWig-T~-~Gl~~yd~~~~~f~~~~~~~~~~  129 (795)
T 4a2l_A           53 RG-NMWFATYDGVNKYDGYAFTVYQHNEDDPNSIANDISRIVKTDSQGRVWIG-TR-DGLSRYDEEKDIFQNFFYEKNGK  129 (795)
T ss_dssp             TS-CEEEEETTEEEEECSSCEEEECCCTTCTTSCSCSCEEEEEECTTSCEEEE-ES-SCEEEEETTTTEEEEECCEETTE
T ss_pred             CC-CEEEeecCcCcccCCCceEEEeCCCCCCCcccccceeEEEECCCCCEEEE-eC-CchheeCCCCCeEEeccccccCC
Confidence            44 55566667788887543222211101     2356999999999986654 43 4589999887765432221 11 


Q ss_pred             --ceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEee-cc-CCC-eEEEEEcCCCCeEEEeecCCeEEEEe
Q 038577           95 --PVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLA-DC-NDK-VTALNWSPDSNYLLVGSKDLAVRLFY  169 (860)
Q Consensus        95 --~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~-~h-~~~-v~~l~~s~d~~~l~s~~~dg~v~vwd  169 (860)
                        .|.++...++|.+.+... +.+..|+..+++.        ..+. ++ ... |.++...+++.+.+ ++.++.+..|+
T Consensus       130 ~~~i~~i~~d~~g~lwi~t~-~gl~~~~~~~~~~--------~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~  199 (795)
T 4a2l_A          130 HLQVNGIEEISPEQLLISTP-EGLIMFDIKESKF--------IDDSFSTAMHKTIASTLYRQGDQIYI-GTSTDGLYTYS  199 (795)
T ss_dssp             ECCCCEEEEEETTEEEEEET-TEEEEEETTTTEE--------ECSSSCHHHHTCCEEEEEEETTEEEE-EESSSCEEEEE
T ss_pred             CceEEEEEECCCCCEEEEEC-CceEEEECCCCEE--------EeccCCCCCCcceEEEEECCCCCEEE-EECCCCEEEEe
Confidence              188999988887666544 6789999876531        1111 11 123 88888888876554 55555588888


Q ss_pred             ecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCccee
Q 038577          170 VKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRV  249 (860)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (860)
                      ..+. ..    .......+...|.++...+++.      +..++.++-+..|+..++..                     
T Consensus       200 ~~~~-~~----~~~~~~~~~~~i~~i~~d~~g~------lwigt~~~Gl~~~~~~~~~~---------------------  247 (795)
T 4a2l_A          200 ITQK-TF----EKVIPILGTKQIQAILQQSPTR------IWVATEGAGLFLINPKTKEI---------------------  247 (795)
T ss_dssp             TTTC-CE----EECC----CCCEEEEEEEETTE------EEEEEBSSCEEEEETTTTEE---------------------
T ss_pred             CCCC-eE----EEecCCCCCCeeEEEEEcCCCC------EEEEECCCCeEEEeCCCCeE---------------------
Confidence            7655 11    0000112356788888877774      55666554588888765321                     


Q ss_pred             eeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEee-------cCceeEEEEEeeCCCEEE
Q 038577          250 KKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSI-------SREKITTAVFNELGNWLV  322 (860)
Q Consensus       250 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~-------~~~~i~~~~~s~~~~~l~  322 (860)
                      ..+..............|.++...++|.+ .+|+.+ -+.+|+..++........       ....|.++...++|..-+
T Consensus       248 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi  325 (795)
T 4a2l_A          248 KNYLHSPSNPKSISSNYIRSLAMDSQNRL-WIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWL  325 (795)
T ss_dssp             EEECCCTTCTTSCSCSBEEEEEECTTSCE-EEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEE
T ss_pred             EEeecCCCCccccCCCeEEEEEEcCCCCE-EEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEE
Confidence            11100000001112356999999888874 455555 488899877665433221       235688998888887554


Q ss_pred             EEEccCCcEEEEEccCceEEEEecC------cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeec-------
Q 038577          323 FGCAKLGQLLVWEWRSESYILKQQG------HYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTE-------  389 (860)
Q Consensus       323 ~~~~~~g~i~v~d~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------  389 (860)
                       ++.. +-|..|+..++........      ....|.++...++|. |-.|+.++-|..|+..++........       
T Consensus       326 -gt~~-~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~  402 (795)
T 4a2l_A          326 -GTYF-GGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARG  402 (795)
T ss_dssp             -EESS-SCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------C
T ss_pred             -EECC-CCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccC
Confidence             4433 6788888776543322111      234689999988886 45577777899999877654432211       


Q ss_pred             -CCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeC----CCCCcEEEEEECCCCCEEEEEecCCCeEEEEEC
Q 038577          390 -HTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTT----PSSRQFVSLASDQSGEVICAGTLDSFEIFVWSM  464 (860)
Q Consensus       390 -~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~  464 (860)
                       ....|.+++..++++.|..|+.++-+..||..+++... +..    .....+.++..+++|.+.+... +  .+.+||.
T Consensus       403 l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~-~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~--Gl~~~~~  478 (795)
T 4a2l_A          403 IGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN-FNQRNSQLVNENVYAILPDGEGNLWLGTL-S--ALVRFNP  478 (795)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE-ECTTTSCCSCSCEEEEEECSSSCEEEEES-S--CEEEEET
T ss_pred             CCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE-eecCCCCcCCCeeEEEEECCCCCEEEEec-C--ceeEEeC
Confidence             24578999988888757778877789999987765433 221    1234688999999888666554 4  4999998


Q ss_pred             CCCceEEEecC------cccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc-------ccCCCeEEEEEeeCC
Q 038577          465 KTGRLLDILSG------HEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF-------PHTHDVLTVVYRPDG  531 (860)
Q Consensus       465 ~~~~~~~~~~~------h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~s~~~  531 (860)
                      .+++.......      +...|.++...++|.+.+...  +-+..||..++..  ...       .....|.++...++|
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g  554 (795)
T 4a2l_A          479 EQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNG  554 (795)
T ss_dssp             TTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTS
T ss_pred             CCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCC
Confidence            87765433211      236789999998888666544  4488899877653  221       134578999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECC
Q 038577          532 RQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVA  611 (860)
Q Consensus       532 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~  611 (860)
                      ++.+... . -+..||..+++.. .+......                ....|.++..+++|++.+++ . +-|..|+..
T Consensus       555 ~lWigT~-~-Gl~~~d~~~~~~~-~~~~~~gl----------------~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~  613 (795)
T 4a2l_A          555 IIWVGTR-E-GFYCFNEKDKQIK-RYNTTNGL----------------PNNVVYGILEDSFGRLWLST-N-RGISCFNPE  613 (795)
T ss_dssp             CEEEEES-S-CEEEEETTTTEEE-EECGGGTC----------------SCSCEEEEEECTTSCEEEEE-T-TEEEEEETT
T ss_pred             CEEEEeC-C-CceeECCCCCcEE-EeCCCCCC----------------chhheEEEEECCCCCEEEEc-C-CceEEEcCC
Confidence            8665543 4 4888998776433 23222111                12348899999999877765 3 457888887


Q ss_pred             Cce
Q 038577          612 DQV  614 (860)
Q Consensus       612 ~~~  614 (860)
                      +++
T Consensus       614 ~~~  616 (795)
T 4a2l_A          614 TEK  616 (795)
T ss_dssp             TTE
T ss_pred             CCc
Confidence            765

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.74  E-value=1.4e-15  Score=157.38  Aligned_cols=277  Identities=10%  Similarity=0.028  Sum_probs=195.4

Q ss_pred             ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 038577          307 EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVT  386 (860)
Q Consensus       307 ~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  386 (860)
                      ..+.++.|++++..++....+ +.++.|   .+.....+..+...+.+++|+++|++++++..++.|.+||..+++....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~   81 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISE-SELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP   81 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCG-GGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE
T ss_pred             cccceeeecCCccceeEEeec-ccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE
Confidence            346677788877666555443 788888   3444555566667789999999999888888899999999988876655


Q ss_pred             eecCCCceEEEEEeeCCCEEEEEeCC----CcEEEEEccccceeeEee-CCCCCcEEEEEECCCCCEEEEEecC-----C
Q 038577          387 FTEHTNAVTALHFMANNHSLLSASLD----GTVRAWDLFRYRNFRTFT-TPSSRQFVSLASDQSGEVICAGTLD-----S  456 (860)
Q Consensus       387 ~~~~~~~v~~i~~~~~~~~l~s~~~d----g~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-----~  456 (860)
                      ...+...+.+++++++++.+++...+    +.|.+||..++.....+. ......+..++++|+|+++++...+     .
T Consensus        82 ~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~  161 (333)
T 2dg1_A           82 FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPL  161 (333)
T ss_dssp             EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCC
T ss_pred             eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCC
Confidence            54567789999999999877777666    689999988776543333 2233468899999999887766532     2


Q ss_pred             CeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEE-EeCCCcEEEEEccC-CcceeE-----E--cccCCCeEEEEE
Q 038577          457 FEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLAS-SSWDKTVRLWNVFE-GKGSVE-----S--FPHTHDVLTVVY  527 (860)
Q Consensus       457 ~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~dg~i~iwd~~~-~~~~~~-----~--~~~~~~v~~~~~  527 (860)
                      +.|+.+|..+++..... .+...+..++|+|+++.++. .+.++.|.+||+.+ +.....     .  ......+..+++
T Consensus       162 ~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~  240 (333)
T 2dg1_A          162 GGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCI  240 (333)
T ss_dssp             EEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEE
T ss_pred             ceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEE
Confidence            37888887766554333 34456789999999986654 45578999999964 322211     1  111246788999


Q ss_pred             eeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCC
Q 038577          528 RPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSK  603 (860)
Q Consensus       528 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg  603 (860)
                      +++|+++++...++.|.+||. +++.+..+..+....              .+...+.+++|+||++.|+.++.++
T Consensus       241 d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~--------------g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          241 DSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDE--------------GHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             BTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGG--------------TCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             CCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCcc--------------ccccCcceEEECCCCCEEEEEeCcc
Confidence            999998888878899999998 566666664332100              0001378999999998877666554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.73  E-value=3.4e-12  Score=148.20  Aligned_cols=513  Identities=10%  Similarity=0.062  Sum_probs=319.7

Q ss_pred             EEEe-CCCEEEeeeCCeEEEEECCCCcEEeeccCCcc---CeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee-c
Q 038577           18 AVLS-QNTKLISPVGNRVSVTDLIKSKTVTLPVESSS---NICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-F   92 (860)
Q Consensus        18 ~~~s-dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~---~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~-~   92 (860)
                      +... +|.+. .+..+.+..||..+++..........   .|.++...++|.+.+...  +.+..||..+++...... .
T Consensus        93 i~~d~~g~lW-igT~~Gl~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d~~g~lwi~t~--~gl~~~~~~~~~~~~~~~~~  169 (795)
T 4a2l_A           93 VKTDSQGRVW-IGTRDGLSRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPEQLLISTP--EGLIMFDIKESKFIDDSFST  169 (795)
T ss_dssp             EEECTTSCEE-EEESSCEEEEETTTTEEEEECCEETTEECCCCEEEEEETTEEEEEET--TEEEEEETTTTEEECSSSCH
T ss_pred             EEECCCCCEE-EEeCCchheeCCCCCeEEeccccccCCCceEEEEEECCCCCEEEEEC--CceEEEECCCCEEEeccCCC
Confidence            4445 66544 45556799999988876544321111   289999999998766544  568999987765432111 0


Q ss_pred             -CCc-eeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEee
Q 038577           93 -KYP-VNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYV  170 (860)
Q Consensus        93 -~~~-v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~  170 (860)
                       ... |.++...++|.+.+...++.+..|+..+++...     .. ...+...|.++...+++.+.+ ++.++-+..||.
T Consensus       170 ~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~-----~~-~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~  242 (795)
T 4a2l_A          170 AMHKTIASTLYRQGDQIYIGTSTDGLYTYSITQKTFEK-----VI-PILGTKQIQAILQQSPTRIWV-ATEGAGLFLINP  242 (795)
T ss_dssp             HHHTCCEEEEEEETTEEEEEESSSCEEEEETTTCCEEE-----CC-----CCCEEEEEEEETTEEEE-EEBSSCEEEEET
T ss_pred             CCCcceEEEEECCCCCEEEEECCCCEEEEeCCCCeEEE-----ec-CCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeC
Confidence             112 888999888877765555568899987765210     00 112346788888888876554 444445888887


Q ss_pred             cccccCcccccceEee-------cCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCC
Q 038577          171 KEKLKGIHTNKPFLLL-------GHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPG  243 (860)
Q Consensus       171 ~~~~~~~~~~~~~~~~-------~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~  243 (860)
                      .+.      .......       -....|.++...+++.      |..++.+ -+.+|+..++.                
T Consensus       243 ~~~------~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~------lWigt~~-Gl~~~~~~~~~----------------  293 (795)
T 4a2l_A          243 KTK------EIKNYLHSPSNPKSISSNYIRSLAMDSQNR------LWIGTFN-DLNIYHEGTDS----------------  293 (795)
T ss_dssp             TTT------EEEEECCCTTCTTSCSCSBEEEEEECTTSC------EEEEESS-CEEEEETTTTE----------------
T ss_pred             CCC------eEEEeecCCCCccccCCCeEEEEEEcCCCC------EEEEeCC-hhheEcCCCCe----------------
Confidence            654      1111111       1245689998888875      6666655 57788766531                


Q ss_pred             CCcceeeeEEeeee---ccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEe------ecCceeEEEEE
Q 038577          244 TPERRVKKWGLLRK---DDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLS------ISREKITTAVF  314 (860)
Q Consensus       244 ~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~------~~~~~i~~~~~  314 (860)
                              +.....   ....-....|.++...++|. +.+|+.++-|..++...........      .....|.++..
T Consensus       294 --------~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~  364 (795)
T 4a2l_A          294 --------FASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVE  364 (795)
T ss_dssp             --------EEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEE
T ss_pred             --------EEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEE
Confidence                    111110   01112335699999999887 5667777778888875544322111      12346888888


Q ss_pred             eeCCCEEEEEEccCCcEEEEEccCceEEEEecC--------cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 038577          315 NELGNWLVFGCAKLGQLLVWEWRSESYILKQQG--------HYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVT  386 (860)
Q Consensus       315 s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  386 (860)
                      .++|...+ ++.. +-|..|+..++........        ....|.++...++|..|..|+.++.+..||..+++....
T Consensus       365 d~~g~lWi-Gt~~-~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~  442 (795)
T 4a2l_A          365 DKDKNLWI-GTND-GGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENF  442 (795)
T ss_dssp             CTTSCEEE-EESS-SCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             CCCCCEEE-EECC-CCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEe
Confidence            88776544 4443 6799999887765443211        235689999988888566777777899999887764433


Q ss_pred             ee----cCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeC-----CCCCcEEEEEECCCCCEEEEEecCCC
Q 038577          387 FT----EHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTT-----PSSRQFVSLASDQSGEVICAGTLDSF  457 (860)
Q Consensus       387 ~~----~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~  457 (860)
                      ..    .....|.++...+++...+ |+. +.+..||..+++.......     .....+.++..+++|++.+... +  
T Consensus       443 ~~~~~~l~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~--  517 (795)
T 4a2l_A          443 NQRNSQLVNENVYAILPDGEGNLWL-GTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E--  517 (795)
T ss_dssp             CTTTSCCSCSCEEEEEECSSSCEEE-EES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S--
T ss_pred             ecCCCCcCCCeeEEEEECCCCCEEE-Eec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C--
Confidence            21    1345789999888886544 444 4588899876544322211     1234688899999998776554 4  


Q ss_pred             eEEEEECCCCceEEEec-------CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcc----cCCCeEEEE
Q 038577          458 EIFVWSMKTGRLLDILS-------GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFP----HTHDVLTVV  526 (860)
Q Consensus       458 ~i~v~d~~~~~~~~~~~-------~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~  526 (860)
                      .+..||..+++.  .+.       .+...|.++...++|.+.++.. . -+..||..+.+ ......    ....|.++.
T Consensus       518 Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~-~~~~~~~~gl~~~~i~~i~  592 (795)
T 4a2l_A          518 GLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQ-IKRYNTTNGLPNNVVYGIL  592 (795)
T ss_dssp             CEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTE-EEEECGGGTCSCSCEEEEE
T ss_pred             ceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCc-EEEeCCCCCCchhheEEEE
Confidence            499999887765  222       1345789999999998665443 4 48889987664 222221    234688899


Q ss_pred             EeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcE--EEEEEecCCCEEEEecCCCe
Q 038577          527 YRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCF--TTLCYSADGSYILAGGSSKY  604 (860)
Q Consensus       527 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~l~~s~~g~~l~~~~~dg~  604 (860)
                      ..++|++.+++ . +-|..|+..+++. ..+.......                ...+  .+++..++|++++ |+.+| 
T Consensus       593 ~d~~g~lWi~t-~-~Gl~~~~~~~~~~-~~~~~~dGl~----------------~~~f~~~~~~~~~~G~l~~-g~~~G-  651 (795)
T 4a2l_A          593 EDSFGRLWLST-N-RGISCFNPETEKF-RNFTESDGLQ----------------SNQFNTASYCRTSVGQMYF-GGING-  651 (795)
T ss_dssp             ECTTSCEEEEE-T-TEEEEEETTTTEE-EEECGGGTCS----------------CSCEEEEEEEECTTSCEEE-EETTE-
T ss_pred             ECCCCCEEEEc-C-CceEEEcCCCCcE-EEcCCcCCCc----------------cccCccCceeECCCCeEEE-ecCCc-
Confidence            98888866655 3 4588899877653 3343332211                1112  5777888897666 55566 


Q ss_pred             EEEEECC
Q 038577          605 ICMYDVA  611 (860)
Q Consensus       605 v~vwd~~  611 (860)
                      +..++..
T Consensus       652 l~~~~p~  658 (795)
T 4a2l_A          652 ITTFRPE  658 (795)
T ss_dssp             EEEECGG
T ss_pred             eEEEcHH
Confidence            5555543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.73  E-value=1.9e-15  Score=155.42  Aligned_cols=241  Identities=12%  Similarity=0.079  Sum_probs=182.5

Q ss_pred             ceeEEEEEeeCCCEEEEEEccC-----------------------CcEEEEEccCceEEEEec-CcccCeEEEEEcCCCC
Q 038577          307 EKITTAVFNELGNWLVFGCAKL-----------------------GQLLVWEWRSESYILKQQ-GHYFDVNCLAYSPDSQ  362 (860)
Q Consensus       307 ~~i~~~~~s~~~~~l~~~~~~~-----------------------g~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~  362 (860)
                      ..+.+++++++|+.+++...+.                       +.|.+||..+++...... .+......++++|+|+
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~  103 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN  103 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence            5688999999998776655431                       479999999888776654 4556789999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCe-eEEEe---------ecCCCceEEEEEee-CCCEEEEEe-CCCcEEEEEccccceeeEee
Q 038577          363 LLATGADDNKVKVWTVSSGF-CFVTF---------TEHTNAVTALHFMA-NNHSLLSAS-LDGTVRAWDLFRYRNFRTFT  430 (860)
Q Consensus       363 ~l~~~~~dg~i~iwd~~~~~-~~~~~---------~~~~~~v~~i~~~~-~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~  430 (860)
                      ++++...++.|++|+..... .+..+         ..+-..+..++++| ++..+++.+ .++.|++|+ .+++....+.
T Consensus       104 l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~  182 (329)
T 3fvz_A          104 YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWG  182 (329)
T ss_dssp             EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEEC
T ss_pred             EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEec
Confidence            88888889999999976442 44444         23445789999999 788888876 689999999 5666666554


Q ss_pred             CCC---------CCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec--CcccCeEEEEEcCCCCEEEEE----
Q 038577          431 TPS---------SRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS--GHEGPVHGLVFSPTNATLASS----  495 (860)
Q Consensus       431 ~~~---------~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~----  495 (860)
                      ...         -.....++++|++..++++...++.|++||..+++.+..+.  .+...+.+++|+| +..+++.    
T Consensus       183 ~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~  261 (329)
T 3fvz_A          183 EESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPY  261 (329)
T ss_dssp             EECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCC
T ss_pred             cCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEE
Confidence            221         12378999999955555555544599999999899988874  4567889999999 4333333    


Q ss_pred             ---eCCCcEEEEEccCCcceeEEc---ccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCC
Q 038577          496 ---SWDKTVRLWNVFEGKGSVESF---PHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPL  549 (860)
Q Consensus       496 ---~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  549 (860)
                         ..+..|++||..+++....+.   .+...+..++++|+|.++++...++.|++|++.
T Consensus       262 v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          262 FGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             TTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred             eccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence               334589999999988655542   466778999999999888888889999999975

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.73  E-value=5e-15  Score=151.83  Aligned_cols=268  Identities=9%  Similarity=-0.024  Sum_probs=195.4

Q ss_pred             CCcEEEEEccCceEEEEec------CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEee
Q 038577          328 LGQLLVWEWRSESYILKQQ------GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMA  401 (860)
Q Consensus       328 ~g~i~v~d~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~  401 (860)
                      ++.|.++|.++++....+.      ........+++. +++.+++...++.|.+||..+++.+.++. ....+..+++++
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~   93 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS   93 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC
Confidence            5899999999988765431      112345677774 44555666667999999999999988885 456789999999


Q ss_pred             CCCEEEEEeCCCcEEEEEccccceeeEeeCCCCC----cEEEEEECCCCCEEEEEec--CCCeEEEEECCCCceEEEecC
Q 038577          402 NNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSR----QFVSLASDQSGEVICAGTL--DSFEIFVWSMKTGRLLDILSG  475 (860)
Q Consensus       402 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~--~~~~i~v~d~~~~~~~~~~~~  475 (860)
                      +++.+++...++.|.+||..+++....+......    ....+++  ++..++++..  ++ .|.++|..+++.+..+..
T Consensus        94 ~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~-~v~viD~~t~~~~~~i~~  170 (328)
T 3dsm_A           94 DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQN-RILKIDTETDKVVDELTI  170 (328)
T ss_dssp             TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCC-EEEEEETTTTEEEEEEEC
T ss_pred             CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCC-EEEEEECCCCeEEEEEEc
Confidence            9854445448899999999999888777654411    3345666  4556666654  44 999999999998887764


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCC----------CcEEEEEccCCcceeEEcc-cCCCeEEEEEeeCCCEEEEEeCCCeEE
Q 038577          476 HEGPVHGLVFSPTNATLASSSWD----------KTVRLWNVFEGKGSVESFP-HTHDVLTVVYRPDGRQLACSTLDGQIH  544 (860)
Q Consensus       476 h~~~v~~l~~s~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~  544 (860)
                      . .....++++|+|++++++..+          +.|.++|..+++....... .......++|+|+++.|+++..  .|.
T Consensus       171 g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~  247 (328)
T 3dsm_A          171 G-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIW  247 (328)
T ss_dssp             S-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEE
T ss_pred             C-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEE
Confidence            3 345789999999977776654          7899999988874434332 2346899999999999988865  899


Q ss_pred             EEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEec-CCCEEEEe----cCCCeEEEEECCCceEEEEE
Q 038577          545 FWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSA-DGSYILAG----GSSKYICMYDVADQVLLRRF  619 (860)
Q Consensus       545 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~~~----~~dg~v~vwd~~~~~~~~~~  619 (860)
                      +||..+++.........                  .+.....++++| +++..++.    ..++.|.+||.. |+.++++
T Consensus       248 ~~d~~t~~~~~~~~~~~------------------~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i  308 (328)
T 3dsm_A          248 RMPVEADRVPVRPFLEF------------------RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF  308 (328)
T ss_dssp             EEETTCSSCCSSCSBCC------------------CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred             EEECCCCceeeeeeecC------------------CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence            99998887531100000                  023478999999 55566665    578999999998 9999888


Q ss_pred             eec
Q 038577          620 QIT  622 (860)
Q Consensus       620 ~~~  622 (860)
                      ...
T Consensus       309 ~~G  311 (328)
T 3dsm_A          309 YVG  311 (328)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.73  E-value=9.1e-15  Score=167.61  Aligned_cols=276  Identities=10%  Similarity=0.062  Sum_probs=195.4

Q ss_pred             CCCCEEEEEEcC-----CeEEEEECCCceeEEEEee------cCceeEEEEEeeCCCEEEEEEccCC----cEEEEEccC
Q 038577          274 RGLDMVVVGFSN-----GVFGLYQMPDFVCIHLLSI------SREKITTAVFNELGNWLVFGCAKLG----QLLVWEWRS  338 (860)
Q Consensus       274 ~~~~~l~~~~~~-----g~i~~~~~~~~~~~~~~~~------~~~~i~~~~~s~~~~~l~~~~~~~g----~i~v~d~~~  338 (860)
                      |+|++++....+     +.+.+.+...++....+..      +...+..++|||||++++++....|    .|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            888888765543     2445555544443333222      2235889999999999999887655    899999999


Q ss_pred             ceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCc----------------EEEEECCCCee----EEEeecCCCceEEEE
Q 038577          339 ESYILKQQGHYFDVNCLAYSPDSQLLATGADDNK----------------VKVWTVSSGFC----FVTFTEHTNAVTALH  398 (860)
Q Consensus       339 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~----------------i~iwd~~~~~~----~~~~~~~~~~v~~i~  398 (860)
                      ++.......+ ..+..++|+|||+.|+.++.++.                |++|++.++..    +.....|...+..+.
T Consensus       161 g~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~  239 (710)
T 2xdw_A          161 AKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE  239 (710)
T ss_dssp             TEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred             CCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEE
Confidence            9876543222 23678999999999999888766                99999988752    222223455688999


Q ss_pred             EeeCCCEEEEEeC-----CCcEEEEEccc------cc-eeeEeeCCCCCcEEEEEECCCCCEEEEEecCC---CeEEEEE
Q 038577          399 FMANNHSLLSASL-----DGTVRAWDLFR------YR-NFRTFTTPSSRQFVSLASDQSGEVICAGTLDS---FEIFVWS  463 (860)
Q Consensus       399 ~~~~~~~l~s~~~-----dg~i~~wd~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~i~v~d  463 (860)
                      |+|||++|+.++.     +..+.+||+.+      +. ..+.+....... . ..++++|..++..+..+   ..|.+||
T Consensus       240 ~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~s~dg~~l~~~s~~~~~~~~l~~~d  317 (710)
T 2xdw_A          240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGE-Y-DYVTNEGTVFTFKTNRHSPNYRLINID  317 (710)
T ss_dssp             ECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSC-E-EEEEEETTEEEEEECTTCTTCEEEEEE
T ss_pred             EcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcE-E-EEEeccCCEEEEEECCCCCCCEEEEEe
Confidence            9999999887764     56899999986      43 345554443322 2 24788999888776543   3799999


Q ss_pred             CCCCce--EEEecCccc--CeEEEEEcCCCCEEEEEeCCCc--EEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEE
Q 038577          464 MKTGRL--LDILSGHEG--PVHGLVFSPTNATLASSSWDKT--VRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACS  537 (860)
Q Consensus       464 ~~~~~~--~~~~~~h~~--~v~~l~~s~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  537 (860)
                      +.++..  ...+..|..  .+..++|++++.++++...|+.  |++||+.+++....+..+...+..+.++|++..++..
T Consensus       318 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~  397 (710)
T 2xdw_A          318 FTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQ  397 (710)
T ss_dssp             TTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEE
T ss_pred             CCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEE
Confidence            988752  344444543  6888999988888888888885  5566775666555555567778899999999876644


Q ss_pred             e----CCCeEEEEeCCCCc
Q 038577          538 T----LDGQIHFWDPLNGE  552 (860)
Q Consensus       538 ~----~dg~i~iwd~~~~~  552 (860)
                      .    ..+.|+.||+.+++
T Consensus       398 ~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          398 FTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EECSSCCCEEEEEETTSSS
T ss_pred             EeCCCCCCEEEEEECCCCc
Confidence            2    34789999999887

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.73  E-value=5e-15  Score=169.78  Aligned_cols=277  Identities=10%  Similarity=0.029  Sum_probs=197.1

Q ss_pred             eCCCEEEEEEccCC----cEEEEEccCceEEEEe------cCcccCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCC
Q 038577          316 ELGNWLVFGCAKLG----QLLVWEWRSESYILKQ------QGHYFDVNCLAYSPDSQLLATGADDN-----KVKVWTVSS  380 (860)
Q Consensus       316 ~~~~~l~~~~~~~g----~i~v~d~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~  380 (860)
                      |+|++++......+    .+.+.+...+.....+      .+|...+..++|||||++|+.+..++     .|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            88888887765433    3444444444332222      12334588999999999998876543     899999999


Q ss_pred             CeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCc----------------EEEEEcccccee--eEeeCC-CCCcEEEEE
Q 038577          381 GFCFVTFTEHTNAVTALHFMANNHSLLSASLDGT----------------VRAWDLFRYRNF--RTFTTP-SSRQFVSLA  441 (860)
Q Consensus       381 ~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~----------------i~~wd~~~~~~~--~~~~~~-~~~~~~~~~  441 (860)
                      ++.......+ ..+..++|+|||+.|+.++.++.                |++|++.++...  ..+..+ +...+..+.
T Consensus       161 g~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~  239 (710)
T 2xdw_A          161 AKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE  239 (710)
T ss_dssp             TEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred             CCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEE
Confidence            9877643322 23678999999999998888766                999999877633  222322 234577899


Q ss_pred             ECCCCCEEEEEecC----CCeEEEEECCC------Cc-eEEEecCcccCeEEEEEcCCCCEEEEEeCCC----cEEEEEc
Q 038577          442 SDQSGEVICAGTLD----SFEIFVWSMKT------GR-LLDILSGHEGPVHGLVFSPTNATLASSSWDK----TVRLWNV  506 (860)
Q Consensus       442 ~~~~~~~l~~~~~~----~~~i~v~d~~~------~~-~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg----~i~iwd~  506 (860)
                      ++|||++|+.....    ...|++||+.+      +. ....+..+...+.. .|+|+|+.|+..+.++    .|.+||+
T Consensus       240 ~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~  318 (710)
T 2xdw_A          240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDF  318 (710)
T ss_dssp             ECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEET
T ss_pred             EcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeC
Confidence            99999999887651    23899999987      53 35566666666655 5889999888776543    5999999


Q ss_pred             cCCcc--eeEEcccCC--CeEEEEEeeCCCEEEEEeCCCe--EEEEeCCCCceeEEEecccccCCCccccccccccccCC
Q 038577          507 FEGKG--SVESFPHTH--DVLTVVYRPDGRQLACSTLDGQ--IHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSS  580 (860)
Q Consensus       507 ~~~~~--~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  580 (860)
                      .++..  ...+..+..  .+..++|++++.++++...++.  |.+|++.+|+.+..+..+..                  
T Consensus       319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~------------------  380 (710)
T 2xdw_A          319 TDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVG------------------  380 (710)
T ss_dssp             TSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSS------------------
T ss_pred             CCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCc------------------
Confidence            87642  244555544  6888999988888888888885  67778878887777665432                  


Q ss_pred             CCcEEEEEEecCCCEEEEec----CCCeEEEEECCCce
Q 038577          581 GKCFTTLCYSADGSYILAGG----SSKYICMYDVADQV  614 (860)
Q Consensus       581 ~~~i~~l~~s~~g~~l~~~~----~dg~v~vwd~~~~~  614 (860)
                        .+..++++|+++.++...    ..+.|+.||+.+++
T Consensus       381 --~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          381 --SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             --EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             --eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence              488899999998766432    34789999999876

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.73  E-value=4.2e-15  Score=150.65  Aligned_cols=282  Identities=12%  Similarity=0.058  Sum_probs=204.1

Q ss_pred             EEEeeCCCEEEEEEcc----CCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEe----------CCCcEEEEE
Q 038577          312 AVFNELGNWLVFGCAK----LGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGA----------DDNKVKVWT  377 (860)
Q Consensus       312 ~~~s~~~~~l~~~~~~----~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd  377 (860)
                      ....|+++.++++...    ++.|.++|..+++.+..+.....+ . ++++|||++++++.          .++.|.+||
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            4456899999888764    579999999999999888655554 4 99999999888775          357899999


Q ss_pred             CCCCeeEEEeecCC-------CceEEEEEeeCCCEEEEEeC--CCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCE
Q 038577          378 VSSGFCFVTFTEHT-------NAVTALHFMANNHSLLSASL--DGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEV  448 (860)
Q Consensus       378 ~~~~~~~~~~~~~~-------~~v~~i~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (860)
                      ..+++.+.++.-..       .....+.++|||++++++..  ++.|.++|+.+++.+.++..+..    ...+....+.
T Consensus       116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~----~~~~P~g~~~  191 (386)
T 3sjl_D          116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC----YHIFPTAPDT  191 (386)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTE
T ss_pred             CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc----ceeecCCCce
Confidence            99999988875322       24667999999999888864  68999999999999998876542    1222233445


Q ss_pred             EEEEecCCCeEEEEECCC-CceEEEecCc----ccCeE-EEEEc-CCCCEEEEEeCCCcEEEEEccCCcce--eEEc--c
Q 038577          449 ICAGTLDSFEIFVWSMKT-GRLLDILSGH----EGPVH-GLVFS-PTNATLASSSWDKTVRLWNVFEGKGS--VESF--P  517 (860)
Q Consensus       449 l~~~~~~~~~i~v~d~~~-~~~~~~~~~h----~~~v~-~l~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~--~  517 (860)
                      +++.+.|+ .+.+.++.+ ++.......+    ..++. ...|. ++|++++ .+.+|.|++.|+.+....  ..+.  .
T Consensus       192 ~~~~~~DG-~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~  269 (386)
T 3sjl_D          192 FFMHCRDG-SLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALT  269 (386)
T ss_dssp             EEEEETTS-CEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSC
T ss_pred             eEEECCCC-CEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccc
Confidence            55556666 666777765 5543222111    12221 24554 6775544 666899999998765421  1111  0


Q ss_pred             --------cCCCeEEEEEeeCCCEEEEEeC----------CCeEEEEeCCCCceeEEEecccccCCCccccccccccccC
Q 038577          518 --------HTHDVLTVVYRPDGRQLACSTL----------DGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSS  579 (860)
Q Consensus       518 --------~~~~v~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  579 (860)
                              .......++++|+++.+++...          .+.|.++|+.+++.+..+.....                 
T Consensus       270 ~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~-----------------  332 (386)
T 3sjl_D          270 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE-----------------  332 (386)
T ss_dssp             HHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE-----------------
T ss_pred             cccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCC-----------------
Confidence                    1234445788999999888753          25799999999999999887653                 


Q ss_pred             CCCcEEEEEEecCCC-EEEEe-cCCCeEEEEECCCceEEEEEeec
Q 038577          580 SGKCFTTLCYSADGS-YILAG-GSSKYICMYDVADQVLLRRFQIT  622 (860)
Q Consensus       580 ~~~~i~~l~~s~~g~-~l~~~-~~dg~v~vwd~~~~~~~~~~~~~  622 (860)
                          +.++++++|++ +|++. ..++.|.++|..+++.++++...
T Consensus       333 ----~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~  373 (386)
T 3sjl_D          333 ----IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL  373 (386)
T ss_dssp             ----ECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred             ----cceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence                78999999997 66664 56899999999999999988654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.72  E-value=1e-14  Score=149.54  Aligned_cols=268  Identities=10%  Similarity=0.015  Sum_probs=196.6

Q ss_pred             cCCeEEEEECCCceeEEEEee------cCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEE
Q 038577          284 SNGVFGLYQMPDFVCIHLLSI------SREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAY  357 (860)
Q Consensus       284 ~~g~i~~~~~~~~~~~~~~~~------~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~  357 (860)
                      .++.|.++|..+++....+..      .......+.+  ++..+.++...++.|.+||..+++.+..+.. ......+++
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~--~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~   91 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVI--RDGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHF   91 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEE--ETTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEE--ECCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEE
Confidence            378999999998887654321      1123456666  4566666666669999999999998887753 456889999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCC-----CceEEEEEeeCCCEEEEEe--CCCcEEEEEccccceeeEee
Q 038577          358 SPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHT-----NAVTALHFMANNHSLLSAS--LDGTVRAWDLFRYRNFRTFT  430 (860)
Q Consensus       358 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~i~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~  430 (860)
                      +++++.+++...++.|.+||..+++....+....     ..+..+++ .++ .++.+.  .++.|.++|+.+++....+.
T Consensus        92 ~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~-~lyv~~~~~~~~v~viD~~t~~~~~~i~  169 (328)
T 3dsm_A           92 LSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGK-YVYVNCWSYQNRILKIDTETDKVVDELT  169 (328)
T ss_dssp             EETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETT-EEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred             eCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECC-EEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence            9998544444378999999999998887765433     14567777 444 455444  48899999999998888776


Q ss_pred             CCCCCcEEEEEECCCCCEEEEEecC---------CCeEEEEECCCCceEEEecCc-ccCeEEEEEcCCCCEEEEEeCCCc
Q 038577          431 TPSSRQFVSLASDQSGEVICAGTLD---------SFEIFVWSMKTGRLLDILSGH-EGPVHGLVFSPTNATLASSSWDKT  500 (860)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~i~v~d~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~~~dg~  500 (860)
                      ...  ....++++|+|++++++..+         .+.|.++|..+++....+... ......++++|+++.+.++..  .
T Consensus       170 ~g~--~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~  245 (328)
T 3dsm_A          170 IGI--QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--D  245 (328)
T ss_dssp             CSS--CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--S
T ss_pred             cCC--CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--E
Confidence            543  34678899999977766554         138999999999888776532 236899999999999888765  8


Q ss_pred             EEEEEccCCcceeEE-cc-cCCCeEEEEEeeC-CCEEEEE----eCCCeEEEEeCCCCceeEEEeccc
Q 038577          501 VRLWNVFEGKGSVES-FP-HTHDVLTVVYRPD-GRQLACS----TLDGQIHFWDPLNGELMYTIEGRR  561 (860)
Q Consensus       501 i~iwd~~~~~~~~~~-~~-~~~~v~~~~~s~~-~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~  561 (860)
                      |.+||..+++..... .. .......++++|+ +++.++.    ..++.|.+||.. ++.+.++....
T Consensus       246 v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~  312 (328)
T 3dsm_A          246 IWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGI  312 (328)
T ss_dssp             EEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEE
T ss_pred             EEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEecc
Confidence            999999887643211 12 2467889999994 5555555    568899999998 99988887544

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.72  E-value=4.8e-15  Score=150.24  Aligned_cols=284  Identities=12%  Similarity=0.030  Sum_probs=203.7

Q ss_pred             EEecCCCCEEEEEEc-----CCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEc---------cCCcEEEEE
Q 038577          270 CDYHRGLDMVVVGFS-----NGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCA---------KLGQLLVWE  335 (860)
Q Consensus       270 ~~~~~~~~~l~~~~~-----~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---------~~g~i~v~d  335 (860)
                      ....|+++.+++...     ++.|.++|..+++.+..+.....+ . ++++|||++++++..         .++.|.+||
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            345689999888876     589999999999999999887776 4 999999999988763         347899999


Q ss_pred             ccCceEEEEecCc-------ccCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEE
Q 038577          336 WRSESYILKQQGH-------YFDVNCLAYSPDSQLLATGAD--DNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSL  406 (860)
Q Consensus       336 ~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l  406 (860)
                      ..+.+.+..+...       ......++++|||++++++..  ++.|.++|+.+++.+.++....  . ...+....+.+
T Consensus       116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~  192 (386)
T 3sjl_D          116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTF  192 (386)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEE
T ss_pred             CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCcee
Confidence            9999988876422       124567999999999988864  6899999999999998885422  1 22233345677


Q ss_pred             EEEeCCCcEEEEEccc-cceeeEee---CCCCCcE-EEEEE-CCCCCEEEEEecCCCeEEEEECCCCce--EEEec----
Q 038577          407 LSASLDGTVRAWDLFR-YRNFRTFT---TPSSRQF-VSLAS-DQSGEVICAGTLDSFEIFVWSMKTGRL--LDILS----  474 (860)
Q Consensus       407 ~s~~~dg~i~~wd~~~-~~~~~~~~---~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~i~v~d~~~~~~--~~~~~----  474 (860)
                      ++.+.||.+.+.++.+ ++......   ......+ ....| .++|+++++ +.++ .++++|+.++..  ...+.    
T Consensus       193 ~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~v-s~~g-~V~v~d~~~~~~~v~~~~~~~~~  270 (386)
T 3sjl_D          193 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWP-TYTG-KIHQIDLSSGDAKFLPAVEALTE  270 (386)
T ss_dssp             EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEE-BTTS-EEEEEECTTSSCEECCCEESSCH
T ss_pred             EEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEE-eCCC-EEEEEECCCCcceeecceecccc
Confidence            7888899999998876 44322111   1111111 12344 467766554 4455 999999976642  22221    


Q ss_pred             -----C-cccCeEEEEEcCCCCEEEEEeC----------CCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCC-EEEEE
Q 038577          475 -----G-HEGPVHGLVFSPTNATLASSSW----------DKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGR-QLACS  537 (860)
Q Consensus       475 -----~-h~~~v~~l~~s~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~  537 (860)
                           + ..+....++++|+++.++....          .+.|.+.|+.+.+.+..+. -...+.++++++|++ +|+++
T Consensus       271 ~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~-vg~~~~~lavs~D~~~~ly~t  349 (386)
T 3sjl_D          271 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYAL  349 (386)
T ss_dssp             HHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECSSSSCEEEEE
T ss_pred             ccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE-CCCCcceEEECCCCCeEEEEE
Confidence                 0 1233445788999988877643          2579999999998555443 334788999999997 67765


Q ss_pred             e-CCCeEEEEeCCCCceeEEEeccc
Q 038577          538 T-LDGQIHFWDPLNGELMYTIEGRR  561 (860)
Q Consensus       538 ~-~dg~i~iwd~~~~~~~~~~~~~~  561 (860)
                      . .++.|.++|..+++.+.+++...
T Consensus       350 n~~~~~VsViD~~t~k~~~~i~~~~  374 (386)
T 3sjl_D          350 STGDKTLYIHDAESGEELRSVNQLG  374 (386)
T ss_dssp             ETTTTEEEEEETTTCCEEEEECCCC
T ss_pred             cCCCCeEEEEECCCCcEEEEecCCC
Confidence            4 48999999999999999987654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.72  E-value=2.9e-14  Score=147.68  Aligned_cols=275  Identities=10%  Similarity=0.009  Sum_probs=196.0

Q ss_pred             EeeCCCEEEEEEc-cCC---cEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEe----------CCCcEEEEECC
Q 038577          314 FNELGNWLVFGCA-KLG---QLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGA----------DDNKVKVWTVS  379 (860)
Q Consensus       314 ~s~~~~~l~~~~~-~~g---~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd~~  379 (860)
                      ..|+++++++... ...   .|.++|..+++.+..+.....+  .++++|||++++++.          .++.|.+||..
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~  105 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV  105 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence            3467776666653 223   7899999999988877654443  899999999999886          36789999999


Q ss_pred             CCeeEEEeecC-------CCceEEEEEeeCCCEEEEEeC--CCcEEEEEccccceeeE-eeCCCCCcEEEEEECCCCC-E
Q 038577          380 SGFCFVTFTEH-------TNAVTALHFMANNHSLLSASL--DGTVRAWDLFRYRNFRT-FTTPSSRQFVSLASDQSGE-V  448 (860)
Q Consensus       380 ~~~~~~~~~~~-------~~~v~~i~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~  448 (860)
                      +.+.+..+...       ......+.++|||++|+++..  ++.|.++| .+++.... +..+.     ++.+.|++. .
T Consensus       106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~-----~~~~~~~~~~~  179 (373)
T 2mad_H          106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT-----CYHIHPGAPST  179 (373)
T ss_pred             CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc-----eEEEEeCCCce
Confidence            88887766432       234568999999999998874  47899999 99988777 65443     234455554 3


Q ss_pred             EEEEecCCCeEEEEECCCCceEEEec-----CcccC-eEEEEEcCCCCEEEEEeCCCcEEEEEccCCcce-eEEcc----
Q 038577          449 ICAGTLDSFEIFVWSMKTGRLLDILS-----GHEGP-VHGLVFSPTNATLASSSWDKTVRLWNVFEGKGS-VESFP----  517 (860)
Q Consensus       449 l~~~~~~~~~i~v~d~~~~~~~~~~~-----~h~~~-v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~----  517 (860)
                      +++.+.++ .+.++|. +++......     ....+ .....+.+++..++..+.++.+.+.|+...... .....    
T Consensus       180 ~~~~~~dg-~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~  257 (373)
T 2mad_H          180 FYLLCAQG-GLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSG  257 (373)
T ss_pred             EEEEcCCC-CEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCC
Confidence            34444555 8999999 877663322     11122 233456777666555557889999998765321 11110    


Q ss_pred             -------cCCCeEEEEEeeCCCEEEEEeC----------CCeEEEEeCCCCceeEEEecccccCCCccccccccccccCC
Q 038577          518 -------HTHDVLTVVYRPDGRQLACSTL----------DGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSS  580 (860)
Q Consensus       518 -------~~~~v~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  580 (860)
                             .......++++||++.++++..          ++.|.++|+.+++.+..+.....                  
T Consensus       258 ~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~------------------  319 (373)
T 2mad_H          258 GRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHD------------------  319 (373)
T ss_pred             cccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCC------------------
Confidence                   1233455889999998888753          35799999999999998865442                  


Q ss_pred             CCcEEEEEEecCCC-EEEEec-CCCeEEEEECCCceEEEEE
Q 038577          581 GKCFTTLCYSADGS-YILAGG-SSKYICMYDVADQVLLRRF  619 (860)
Q Consensus       581 ~~~i~~l~~s~~g~-~l~~~~-~dg~v~vwd~~~~~~~~~~  619 (860)
                         ..+++|+|||+ +++++. .++.|.+||+.+++.++.+
T Consensus       320 ---p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          320 ---VDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             ---cCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence               68999999999 777776 5899999999999998763

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.72  E-value=2e-14  Score=144.87  Aligned_cols=242  Identities=10%  Similarity=0.152  Sum_probs=180.4

Q ss_pred             CCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEee------cCceeEEEEEe-eCCCEEEEEEccCCcEEEE
Q 038577          262 QAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSI------SREKITTAVFN-ELGNWLVFGCAKLGQLLVW  334 (860)
Q Consensus       262 ~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~------~~~~i~~~~~s-~~~~~l~~~~~~~g~i~v~  334 (860)
                      ++-..+.+++++++++++++...++.|.+|+.. ++....+..      +...+..+++. +++..+++....++.|.+|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            444678999999999988888889999999986 565555542      22467889995 5555554443325899999


Q ss_pred             EccCceEEEEec-CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEee--cCCCceEEEEEeeCCCEEEEEeC
Q 038577          335 EWRSESYILKQQ-GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFT--EHTNAVTALHFMANNHSLLSASL  411 (860)
Q Consensus       335 d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~s~~~  411 (860)
                      | .+++.+..+. .+...+.+++++|+|+++++...++.|.+|+.. +..+..+.  .+...+.+++++++++.+++...
T Consensus       106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~  183 (286)
T 1q7f_A          106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR  183 (286)
T ss_dssp             C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence            9 5566665553 344568999999999988887778999999964 55555554  34567899999999987777778


Q ss_pred             CCcEEEEEccccceeeEeeCCC-CCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCccc--CeEEEEEcCC
Q 038577          412 DGTVRAWDLFRYRNFRTFTTPS-SRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEG--PVHGLVFSPT  488 (860)
Q Consensus       412 dg~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~--~v~~l~~s~~  488 (860)
                      ++.|.+||. +++.+..+.... ...+..++++++|+++++...+++.|.+||. +++.+..+..+..  .+.+++++|+
T Consensus       184 ~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~  261 (286)
T 1q7f_A          184 AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDD  261 (286)
T ss_dssp             GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETT
T ss_pred             CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCC
Confidence            899999997 445555554332 2467899999999877776655338999995 5677776655433  4789999999


Q ss_pred             CCEEEEEeCCCcEEEEEccCC
Q 038577          489 NATLASSSWDKTVRLWNVFEG  509 (860)
Q Consensus       489 ~~~l~s~~~dg~i~iwd~~~~  509 (860)
                      |+++++ +.|+.|++|++...
T Consensus       262 g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          262 GSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             TEEEEE-ETTTEEEEEECSCC
T ss_pred             CcEEEE-CCCCeEEEEEcccc
Confidence            987777 67999999998654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.71  E-value=1.3e-13  Score=140.00  Aligned_cols=281  Identities=5%  Similarity=-0.038  Sum_probs=197.8

Q ss_pred             CCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEE-eecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce
Q 038577          262 QAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLL-SISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES  340 (860)
Q Consensus       262 ~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~  340 (860)
                      .....+.+++++++|+.+++...++.|..|+.. ++..... ......+..++++++|...++. ..++.|..|+.....
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~-~~~~~i~~~~~~g~~   89 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTE-NAANKIGRITKKGII   89 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEE-TTTTEEEEECTTSCE
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeC-CCCCeEEEECCCCcE
Confidence            344578999999999977766668999999987 4433221 2234678899999999866654 334889999986332


Q ss_pred             EEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE-eecCCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 038577          341 YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVT-FTEHTNAVTALHFMANNHSLLSASLDGTVRAWD  419 (860)
Q Consensus       341 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd  419 (860)
                      ...........+.++++.++|..+++...++.|..||. ++..... ...+...+.++++.++++.+++...++.|..||
T Consensus        90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~  168 (299)
T 2z2n_A           90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRIT  168 (299)
T ss_dssp             EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred             EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEc
Confidence            22222234557899999999988887777889999998 5544332 233456789999999998777776778999999


Q ss_pred             ccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEE-ecCcccCeEEEEEcCCCCEEEEEeCC
Q 038577          420 LFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDI-LSGHEGPVHGLVFSPTNATLASSSWD  498 (860)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~~~d  498 (860)
                      . +++............+..++++++|.+.++...++ .|.+||. +++.... ...+...+.+++++++|+++++...+
T Consensus       169 ~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~-~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~  245 (299)
T 2z2n_A          169 E-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGN-KIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGA  245 (299)
T ss_dssp             T-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT-EEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTT
T ss_pred             C-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCc-eEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCC
Confidence            8 55544321222344678999999999666555455 8999999 6665432 33355678999999999977766677


Q ss_pred             CcEEEEEccCCcceeEE--cccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCc
Q 038577          499 KTVRLWNVFEGKGSVES--FPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGE  552 (860)
Q Consensus       499 g~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  552 (860)
                      +.|..||. ++. ....  ..+...+.++++ ++|++.++.. .+.+..++..+++
T Consensus       246 ~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          246 NKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             TEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred             ceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence            89999998 443 2222  234567899999 8888766655 5678888876653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.71  E-value=4.4e-15  Score=153.56  Aligned_cols=268  Identities=10%  Similarity=0.013  Sum_probs=189.3

Q ss_pred             ceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEe
Q 038577          266 KVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ  345 (860)
Q Consensus       266 ~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~  345 (860)
                      .+.+++|++++..++....++.++.|   .++....+..+...+.+++|+++|+.+++. ..++.|.+||..+++.....
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~i~~~d~~~~~~~~~~   82 (333)
T 2dg1_A            7 DLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLD-VFEGNIFKINPETKEIKRPF   82 (333)
T ss_dssp             CCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEE-TTTCEEEEECTTTCCEEEEE
T ss_pred             ccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEE-CCCCEEEEEeCCCCcEEEEe
Confidence            46677788888777766777888888   345556666666678999999999854444 44589999999888766544


Q ss_pred             cCcccCeEEEEEcCCCCEEEEEeCC----CcEEEEECCCCeeEEEee--cCCCceEEEEEeeCCCEEEEEeC------CC
Q 038577          346 QGHYFDVNCLAYSPDSQLLATGADD----NKVKVWTVSSGFCFVTFT--EHTNAVTALHFMANNHSLLSASL------DG  413 (860)
Q Consensus       346 ~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~s~~~------dg  413 (860)
                      ..+...+.+++++|+|+++++...+    +.|.+||..++.....+.  .+...+.+++++|+++.+++...      .+
T Consensus        83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~  162 (333)
T 2dg1_A           83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG  162 (333)
T ss_dssp             ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred             eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCc
Confidence            4566779999999999988877666    689999988776653332  24567899999999987776653      24


Q ss_pred             cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCC-CceEEE--------ecCcccCeEEEE
Q 038577          414 TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT-GRLLDI--------LSGHEGPVHGLV  484 (860)
Q Consensus       414 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~-~~~~~~--------~~~h~~~v~~l~  484 (860)
                      .|..++..+++......  ....+..++++|+|+.++++....+.|++||+.+ +.....        +.++ ..+..++
T Consensus       163 ~l~~~~~~~~~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~  239 (333)
T 2dg1_A          163 GVYYVSPDFRTVTPIIQ--NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCC  239 (333)
T ss_dssp             EEEEECTTSCCEEEEEE--EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEE
T ss_pred             eEEEEeCCCCEEEEeec--CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceE
Confidence            56666655444332221  1224678999999997766654333899999963 433221        1222 4678899


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCC------CeEEEEEeeCCCEEEEEeCCC
Q 038577          485 FSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTH------DVLTVVYRPDGRQLACSTLDG  541 (860)
Q Consensus       485 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~~~~~dg  541 (860)
                      ++++|+++++...++.|.+||.. ++....+..+..      .+.+++|+||++.|++++.++
T Consensus       240 ~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          240 IDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             EBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             ECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            99999988888888999999984 443444333322      588999999988777666553

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.71  E-value=1.3e-13  Score=140.00  Aligned_cols=281  Identities=9%  Similarity=-0.028  Sum_probs=197.7

Q ss_pred             cCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEe-cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCee
Q 038577          305 SREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ-QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFC  383 (860)
Q Consensus       305 ~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  383 (860)
                      ....+.++++.++|+..++. ..++.|.+||.. +...... ..+...+.+++++++|...++...++.|..|+.. +..
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~-~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~   89 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQ-HKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII   89 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEE-TTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             cCCCccceEECCCCCEEEEe-cCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE
Confidence            34578999999999866544 434889999988 5443322 3345678999999999988877778899999976 332


Q ss_pred             -EEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEE
Q 038577          384 -FVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVW  462 (860)
Q Consensus       384 -~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~  462 (860)
                       ...+......+.++++.++++.+++...++.|..||. +++............+..++++++|+++++...++ .|..|
T Consensus        90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~-~i~~~  167 (299)
T 2z2n_A           90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNN-AIGRI  167 (299)
T ss_dssp             EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTT-EEEEE
T ss_pred             EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCC-EEEEE
Confidence             2222234567899999999988877777889999998 54443322222344678999999998777665555 89999


Q ss_pred             ECCCCceEEE-ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeE-EcccCCCeEEEEEeeCCCEEEEEeCC
Q 038577          463 SMKTGRLLDI-LSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVE-SFPHTHDVLTVVYRPDGRQLACSTLD  540 (860)
Q Consensus       463 d~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d  540 (860)
                      |. +++.... +..+...+.+++++++|.+.++...++.|.+||. +++.... ...+...+.+++++++|+++++...+
T Consensus       168 ~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~  245 (299)
T 2z2n_A          168 TE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGA  245 (299)
T ss_dssp             CT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTT
T ss_pred             cC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCC
Confidence            98 6766543 3344567889999999997777767889999998 6553222 12345678999999999966666578


Q ss_pred             CeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCce
Q 038577          541 GQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQV  614 (860)
Q Consensus       541 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~  614 (860)
                      +.|..||. +++. ..+.....                  ...+.++++ ++|++.++.. .+.+..++..+++
T Consensus       246 ~~i~~~d~-~g~~-~~~~~~~~------------------~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          246 NKIGRLTS-NNII-EEYPIQIK------------------SAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             TEEEEEET-TTEE-EEEECSSS------------------SCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred             ceEEEECC-CCce-EEEeCCCC------------------CCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence            89999998 4542 23321110                  124889999 9998777765 5667777776653

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.70  E-value=8.6e-15  Score=148.30  Aligned_cols=241  Identities=11%  Similarity=0.095  Sum_probs=177.3

Q ss_pred             ecCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcccc
Q 038577          345 QQGHYFDVNCLAYSPDSQ-LLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRY  423 (860)
Q Consensus       345 ~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~  423 (860)
                      +..+.....+++|+|+|+ .++++..++.|..|+..++  ...+..+...+.+++++++++.+++...++.|.+||..++
T Consensus        23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g  100 (296)
T 3e5z_A           23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGG  100 (296)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTC
T ss_pred             EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCC
Confidence            334555678999999998 7788888999999999877  5666677888999999999998877777789999999777


Q ss_pred             ceeeEeeCCC---CCcEEEEEECCCCCEEEEE----ec------------CCCeEEEEECCCCceEEEecCcccCeEEEE
Q 038577          424 RNFRTFTTPS---SRQFVSLASDQSGEVICAG----TL------------DSFEIFVWSMKTGRLLDILSGHEGPVHGLV  484 (860)
Q Consensus       424 ~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~----~~------------~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~  484 (860)
                      +.........   ...+..++++|+|+++++.    ..            ..+.|+.++.. ++. ..+..+......++
T Consensus       101 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~  178 (296)
T 3e5z_A          101 EWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLA  178 (296)
T ss_dssp             CEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEE
T ss_pred             cEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCCCCccEE
Confidence            6543322111   1234678999999988863    21            12267777766 554 34445667789999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEcc-CCcc---eeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecc
Q 038577          485 FSPTNATLASSSWDKTVRLWNVF-EGKG---SVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGR  560 (860)
Q Consensus       485 ~s~~~~~l~s~~~dg~i~iwd~~-~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  560 (860)
                      |+|+++.+++.+.++.|++|++. ++..   ...+..+...+..++++++|+++++.  ++.|.+||.. ++.+..+..+
T Consensus       179 ~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~  255 (296)
T 3e5z_A          179 FLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTP  255 (296)
T ss_dssp             ECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECS
T ss_pred             ECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECC
Confidence            99999999777778999999997 4432   11222344556789999999866665  7889999986 7777777654


Q ss_pred             cccCCCccccccccccccCCCCcEEEEEE-ecCCCEEEEecCCCeEEEEECCCce
Q 038577          561 RDISGGRLMTDRRSAANSSSGKCFTTLCY-SADGSYILAGGSSKYICMYDVADQV  614 (860)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-s~~g~~l~~~~~dg~v~vwd~~~~~  614 (860)
                      ..                     +++++| +|+++.|++++.++ +.-++..++.
T Consensus       256 ~~---------------------~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~  288 (296)
T 3e5z_A          256 QT---------------------TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRG  288 (296)
T ss_dssp             SC---------------------CCEEEEESTTSCEEEEEETTE-EEEEECSCCB
T ss_pred             CC---------------------ceeEEEECCCCCEEEEEcCCe-EEEEEccccc
Confidence            42                     688899 58999998887764 5556666554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.69  E-value=2e-14  Score=142.35  Aligned_cols=244  Identities=10%  Similarity=0.040  Sum_probs=191.3

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeeEEEeecCC-CceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEE
Q 038577          360 DSQLLATGADDNKVKVWTVSSGFCFVTFTEHT-NAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFV  438 (860)
Q Consensus       360 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  438 (860)
                      .++.|++++.++.|.+||.++++.+..+..+. ..+.++.++|+|+.++  +.++.|..||. +++.+..+..+....+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            45789999999999999999999999998776 4789999999999888  45778999999 89999988876556788


Q ss_pred             EEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec------CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcce
Q 038577          439 SLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS------GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGS  512 (860)
Q Consensus       439 ~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~------~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  512 (860)
                      ++.+.++|+++++.+.+.+.+..+|. +|+.+..+.      .+......+++.++|+++++...++.|..||.. ++.+
T Consensus        81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~  158 (276)
T 3no2_A           81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL  158 (276)
T ss_dssp             EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence            89999999999998873338888886 688776664      222345667889999999999999999999987 8766


Q ss_pred             eEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecC
Q 038577          513 VESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSAD  592 (860)
Q Consensus       513 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  592 (860)
                      ...... ..+.++...++|++++++..++.|..+|..+|+.+.++...... +.             .-..+..++..++
T Consensus       159 w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~-~~-------------~l~~~~~~~~~~~  223 (276)
T 3no2_A          159 NSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIE-GV-------------QLFFVAQLFPLQN  223 (276)
T ss_dssp             EEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSB-SC-------------CCSEEEEEEECTT
T ss_pred             EEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCC-Cc-------------cccccccceEcCC
Confidence            655443 45567788899999999988889999999999999998754310 00             0123789999999


Q ss_pred             CCEEEEec--CC------CeEEEEEC-CCceEEEEEeecc
Q 038577          593 GSYILAGG--SS------KYICMYDV-ADQVLLRRFQITH  623 (860)
Q Consensus       593 g~~l~~~~--~d------g~v~vwd~-~~~~~~~~~~~~~  623 (860)
                      |..+++..  ..      +..+++++ .+|+.+.++....
T Consensus       224 G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~  263 (276)
T 3no2_A          224 GGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKV  263 (276)
T ss_dssp             SCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTT
T ss_pred             CCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcc
Confidence            99988873  21      24466666 5788877765443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.69  E-value=1.9e-13  Score=141.64  Aligned_cols=276  Identities=11%  Similarity=-0.003  Sum_probs=196.1

Q ss_pred             ecCCCCEEEEEEc--CC---eEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEc---------cCCcEEEEEcc
Q 038577          272 YHRGLDMVVVGFS--NG---VFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCA---------KLGQLLVWEWR  337 (860)
Q Consensus       272 ~~~~~~~l~~~~~--~g---~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---------~~g~i~v~d~~  337 (860)
                      ..|+++++++...  .+   .|.++|..+++.+..+.....+  .++++|||++++++..         .++.|.+||..
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~  105 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV  105 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence            3467777776654  23   8899999999988887766544  9999999999999863         34789999999


Q ss_pred             CceEEEEecCc-------ccCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeeEEE-eecCCCceEEEEEeeCC-CEE
Q 038577          338 SESYILKQQGH-------YFDVNCLAYSPDSQLLATGAD--DNKVKVWTVSSGFCFVT-FTEHTNAVTALHFMANN-HSL  406 (860)
Q Consensus       338 ~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~-~~l  406 (860)
                      +.+.+..+...       ......++++|||++|+++..  ++.|.++| .+++.+.. +... .   ++.+.|++ +.+
T Consensus       106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~  180 (373)
T 2mad_H          106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTF  180 (373)
T ss_pred             CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceE
Confidence            88777665322       123558999999999998874  47899999 99988877 5422 2   24455655 456


Q ss_pred             EEEeCCCcEEEEEccccceeeEee-----CCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCc--eEEEecC----
Q 038577          407 LSASLDGTVRAWDLFRYRNFRTFT-----TPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGR--LLDILSG----  475 (860)
Q Consensus       407 ~s~~~dg~i~~wd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~--~~~~~~~----  475 (860)
                      ++.+.||.+.++|. +++......     ...........+.+++..++..+..+ .+.+.|+.++.  .+..+.-    
T Consensus       181 ~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~v~vid~~~~~~~v~~~~~~~~~~  258 (373)
T 2mad_H          181 YLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSG-KILQADISAAGATNKAPIDALSGG  258 (373)
T ss_pred             EEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCc-eEEEEeccCCcceEeeeeeecCCc
Confidence            67788999999999 776653322     11111122345566666555555555 89999997653  2222211    


Q ss_pred             ------cccCeEEEEEcCCCCEEEEEeC----------CCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCC-EEEEEe
Q 038577          476 ------HEGPVHGLVFSPTNATLASSSW----------DKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGR-QLACST  538 (860)
Q Consensus       476 ------h~~~v~~l~~s~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~  538 (860)
                            .......++++|+++.+..+..          .+.|.++|..+.+....+ ........++|+|||+ +++++.
T Consensus       259 ~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i-~~g~~p~~i~~s~Dg~~~l~v~~  337 (373)
T 2mad_H          259 RKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI-SLGHDVDAISVAQDGGPDLYALS  337 (373)
T ss_pred             ccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEE-ECCCCcCeEEECCCCCeEEEEEc
Confidence                  1122445789999988777653          357999999998855555 4445689999999999 777776


Q ss_pred             -CCCeEEEEeCCCCceeEEE
Q 038577          539 -LDGQIHFWDPLNGELMYTI  557 (860)
Q Consensus       539 -~dg~i~iwd~~~~~~~~~~  557 (860)
                       .++.|.+||+.+++.+..+
T Consensus       338 ~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          338 AGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             CCCCeEEEEECCCCCEEeee
Confidence             5899999999999998874

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=3.8e-10  Score=130.71  Aligned_cols=523  Identities=9%  Similarity=0.037  Sum_probs=312.6

Q ss_pred             CCCEEEeeeCCeEEEEECCCCcEEeeccC-------CccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEe-e--
Q 038577           22 QNTKLISPVGNRVSVTDLIKSKTVTLPVE-------SSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRV-R--   91 (860)
Q Consensus        22 dg~~l~~~~~~~i~v~d~~~~~~~~~~~~-------h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~-~--   91 (860)
                      +| +|=.|..+-+..||-.+-+.......       ....|.++...++|..|-.++.++-+..||..+++..... .  
T Consensus        29 ~G-~lWigT~~GL~ryDG~~f~~~~~~~~~~~~~~l~~n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~  107 (781)
T 3v9f_A           29 QG-FLWFATEEGLNKFDGTRFITYYKEEQSSSVQSITGNELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPE  107 (781)
T ss_dssp             TS-CEEEEESSCEEEECSSSEEEECCCSSCSSSCCCSCSCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTT
T ss_pred             CC-CEEEccCCcCccccCCceEEEEcCCCCCccccccccccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccC
Confidence            44 55556666688887654222211111       1245899999999983444566657999999887765431 1  


Q ss_pred             -----cCCceeEEEECC--CCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeec------cCCCeEEEEEcCCCCeEEE
Q 038577           92 -----FKYPVNAILFSP--NGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLAD------CNDKVTALNWSPDSNYLLV  158 (860)
Q Consensus        92 -----~~~~v~~~~fsp--dg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~------h~~~v~~l~~s~d~~~l~s  158 (860)
                           ....|.++...+  +|.+.+...++.|..||..+++        ...+..      ....|.++...++|.+.+ 
T Consensus       108 ~~~~l~~~~i~~i~~d~~~~g~lwi~t~~~gl~~~~~~~~~--------~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-  178 (781)
T 3v9f_A          108 DPQSLITNDVTHITSSVQAGKGLWVCTYYRGIEYLDIATGK--------FTHYNKSTVPALPSEQTWTATEAEDGKLYI-  178 (781)
T ss_dssp             CSSSCSCSCEEEEEECSSTTSEEEEEESSSCEEEEETTTTE--------EEEESTTTCTTCSCCCEEEEEEEETTEEEE-
T ss_pred             CCCCcccCcceEEEecCccCCCEEEEECCCCeeEEECCCCe--------EEeeccCcccCCCccceEEEEECCCCCEEE-
Confidence                 123588898888  7766554436778899987654        222221      134588888877776544 


Q ss_pred             eecCCeEEEEeecccccCccccc-ceE-eecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCC
Q 038577          159 GSKDLAVRLFYVKEKLKGIHTNK-PFL-LLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMED  236 (860)
Q Consensus       159 ~~~dg~v~vwd~~~~~~~~~~~~-~~~-~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~  236 (860)
                      ++.++-+..||..+. +...... ... ..-....|.++...+++.      |..++.+ -+..|+..++..        
T Consensus       179 gt~~~Gl~~~~~~~~-~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~------lwigt~~-Gl~~~d~~~~~~--------  242 (781)
T 3v9f_A          179 GHVEGGLSILSLNDK-SVKHFVHDPQNPNSLPGNDVRCIYKDTNGN------IWIGTSK-GLALFNANTETF--------  242 (781)
T ss_dssp             EETTTEEEEEETTTT-EEEEECC--------CCSSEEEEEECTTCC------EEEEETT-EEEEEETTTTEE--------
T ss_pred             EecCCCeEEEcCCCC-ceEeeecCCCCcccCCCCceeEEEEcCCCC------EEEEeCC-cHheECCCCCcE--------
Confidence            555656888887654 1100000 000 001235688888887775      5555555 578888665321        


Q ss_pred             CCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEe-------------
Q 038577          237 SEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLS-------------  303 (860)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~-------------  303 (860)
                                   ..+..............|.++...++|. +.+|+..+-+.+++..+........             
T Consensus       243 -------------~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~  308 (781)
T 3v9f_A          243 -------------TNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNY  308 (781)
T ss_dssp             -------------EC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTT
T ss_pred             -------------EEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCC
Confidence                         0110000000011345689998888776 5567775567888887655332211             


Q ss_pred             -ecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEec---------CcccCeEEEEEcCCCCEEEEEeCCCcE
Q 038577          304 -ISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQ---------GHYFDVNCLAYSPDSQLLATGADDNKV  373 (860)
Q Consensus       304 -~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~---------~~~~~v~~~~~s~~~~~l~~~~~dg~i  373 (860)
                       .....|.++...++|..- +++.. +-|..++..++.......         .....|.++...++|. |..|+.++-+
T Consensus       309 ~l~~~~v~~i~~D~~g~lW-igt~~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl  385 (781)
T 3v9f_A          309 SLSNASARYIFQDSFNNIW-IGTWG-GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGI  385 (781)
T ss_dssp             SBSSSCEEEEEECSSCCEE-EEEBS-SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCE
T ss_pred             CCCCCeEEEEEEeCCCCEE-EEecC-CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcE
Confidence             123568888888888644 44433 678888877654332211         1235689999888876 4556666678


Q ss_pred             EEEECCCCeeEEEe---ecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeC--CCCCcEEEEEECCCCCE
Q 038577          374 KVWTVSSGFCFVTF---TEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTT--PSSRQFVSLASDQSGEV  448 (860)
Q Consensus       374 ~iwd~~~~~~~~~~---~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  448 (860)
                      ..|+..++......   ......|.++...+++. |..|+.++.+..++..+++.. .+..  .....+.++..+++|.+
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~l  463 (781)
T 3v9f_A          386 NVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKKI  463 (781)
T ss_dssp             EEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSEE
T ss_pred             EEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCCE
Confidence            99997654322111   12346788988877775 555777677888988665433 2221  23456888988888875


Q ss_pred             EEEEecCCCeEEEEECCCCceEEEecCc-----ccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcc----cC
Q 038577          449 ICAGTLDSFEIFVWSMKTGRLLDILSGH-----EGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFP----HT  519 (860)
Q Consensus       449 l~~~~~~~~~i~v~d~~~~~~~~~~~~h-----~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~  519 (860)
                      .+ ++. + .+..||..+++........     ...|.++...++|.+.+. +.++-+..||..+.+ ......    ..
T Consensus       464 wi-gt~-~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~-~~~~~~~~~l~~  538 (781)
T 3v9f_A          464 WI-GTH-A-GVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQL-VRKFNQYEGFCS  538 (781)
T ss_dssp             EE-EET-T-EEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCCE-EEEECTTTTCSC
T ss_pred             EE-EEC-C-ceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCCe-EEEccCCCCCCC
Confidence            55 444 3 5999999887665433222     467999999988876554 443347778876654 222221    24


Q ss_pred             CCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEe
Q 038577          520 HDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAG  599 (860)
Q Consensus       520 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~  599 (860)
                      ..|.++...++|.+.++. .+|.+..||..+++. ..+......                ....|.++..+++|++.+++
T Consensus       539 ~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~-~~~~~~~gl----------------~~~~i~~i~~d~~g~lW~~t  600 (781)
T 3v9f_A          539 NTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDY-QVFQRKEGL----------------PNTHIRAISEDKNGNIWAST  600 (781)
T ss_dssp             SCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCC-EEECGGGTC----------------SCCCCCEEEECSSSCEEEEC
T ss_pred             CeeEEEEECCCCCEEEEE-CCCceEEECCCCCcE-EEccccCCC----------------CCceEEEEEECCCCCEEEEc
Confidence            568999998888865544 467558999877653 223222211                12247889999999876654


Q ss_pred             cCCCeEEEEECCCce
Q 038577          600 GSSKYICMYDVADQV  614 (860)
Q Consensus       600 ~~dg~v~vwd~~~~~  614 (860)
                       ..| |..|+..+++
T Consensus       601 -~~G-l~~~~~~~~~  613 (781)
T 3v9f_A          601 -NTG-ISCYITSKKC  613 (781)
T ss_dssp             -SSC-EEEEETTTTE
T ss_pred             -CCc-eEEEECCCCc
Confidence             455 7788887664

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.68  E-value=2.5e-14  Score=144.83  Aligned_cols=243  Identities=12%  Similarity=0.075  Sum_probs=174.3

Q ss_pred             EEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 038577          300 HLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVS  379 (860)
Q Consensus       300 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  379 (860)
                      ..+........+++|+|+|+.++.+...++.|..|+..++  ...+..+...+.+++++|+|+++++...++.|.+||..
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP   98 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence            3344445567899999999966666666699999999887  45555667779999999999988877777899999998


Q ss_pred             CCeeEEEeecC----CCceEEEEEeeCCCEEEEEeC-----------------CCcEEEEEccccceeeEeeCCCCCcEE
Q 038577          380 SGFCFVTFTEH----TNAVTALHFMANNHSLLSASL-----------------DGTVRAWDLFRYRNFRTFTTPSSRQFV  438 (860)
Q Consensus       380 ~~~~~~~~~~~----~~~v~~i~~~~~~~~l~s~~~-----------------dg~i~~wd~~~~~~~~~~~~~~~~~~~  438 (860)
                      +++........    ...+.+++++|+|+.+++.+.                 .+.|..++.. ++ ...+. .......
T Consensus        99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~-~~~~~~~  175 (296)
T 3e5z_A           99 GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPI-RDRVKPN  175 (296)
T ss_dssp             TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEE-CCCSSEE
T ss_pred             CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEee-cCCCCCc
Confidence            88765443221    234678999999988887321                 2355555544 33 33332 2334568


Q ss_pred             EEEECCCCCEEEEEecCCCeEEEEECC-CCce---EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeE
Q 038577          439 SLASDQSGEVICAGTLDSFEIFVWSMK-TGRL---LDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVE  514 (860)
Q Consensus       439 ~~~~~~~~~~l~~~~~~~~~i~v~d~~-~~~~---~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~  514 (860)
                      .++++|+|+.+++...++ .|++|++. +++.   ...+..+.+.+.+++++++|+++++.  ++.|.+||.. ++....
T Consensus       176 gi~~s~dg~~lv~~~~~~-~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~  251 (296)
T 3e5z_A          176 GLAFLPSGNLLVSDTGDN-ATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGR  251 (296)
T ss_dssp             EEEECTTSCEEEEETTTT-EEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEE
T ss_pred             cEEECCCCCEEEEeCCCC-eEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEE
Confidence            899999999994444455 99999987 5655   33444455667889999999877666  7889999986 554555


Q ss_pred             EcccCCCeEEEEE-eeCCCEEEEEeCCCeEEEEeCCCCce
Q 038577          515 SFPHTHDVLTVVY-RPDGRQLACSTLDGQIHFWDPLNGEL  553 (860)
Q Consensus       515 ~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~  553 (860)
                      +..+.. +++++| +|+++.|++++.+ .+.-++..+.+.
T Consensus       252 ~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~  289 (296)
T 3e5z_A          252 VLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL  289 (296)
T ss_dssp             EECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred             EECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence            555555 899999 5899999998876 466677766654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.68  E-value=9e-15  Score=151.42  Aligned_cols=275  Identities=13%  Similarity=0.101  Sum_probs=199.7

Q ss_pred             eCCCEEEEEEccC----CcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCC
Q 038577          316 ELGNWLVFGCAKL----GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGA----------DDNKVKVWTVSSG  381 (860)
Q Consensus       316 ~~~~~l~~~~~~~----g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd~~~~  381 (860)
                      ++++.++++....    +.|.++|..+++.+..+..-..+  .++++|||++++++.          .++.|.++|..++
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            5777777777654    69999999999999888655555  899999999888876          3678999999999


Q ss_pred             eeEEEeecC-------CCceEEEEEeeCCCEEEEEeC--CCcEEEEEccccceeeEeeCCCCCcEEEEEECCCC-CEEEE
Q 038577          382 FCFVTFTEH-------TNAVTALHFMANNHSLLSASL--DGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSG-EVICA  451 (860)
Q Consensus       382 ~~~~~~~~~-------~~~v~~i~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~  451 (860)
                      +.+..+.-.       ......+.++|||++++++..  ++.|.+.|+.+.+.+..+..+..     ....|++ +.+++
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-----~~~~p~g~~~~v~  234 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-----YHIFPASPTVFYM  234 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EEEEEEETTEEEE
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-----eeeccCCCcEEEE
Confidence            998877532       234567899999999998874  57899999999999888886542     1222322 33333


Q ss_pred             EecCCCeEEEEECCCCceEEE----ecCcccCe-EEEEEcCCCCEEEEEeCCCcEEEEEccCCccee----EEc-----c
Q 038577          452 GTLDSFEIFVWSMKTGRLLDI----LSGHEGPV-HGLVFSPTNATLASSSWDKTVRLWNVFEGKGSV----ESF-----P  517 (860)
Q Consensus       452 ~~~~~~~i~v~d~~~~~~~~~----~~~h~~~v-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~-----~  517 (860)
                      .+.++ .+.+.+..+++....    +.....++ ..+.+++++..++..+..+.|.+.|........    ...     .
T Consensus       235 ~~~dG-~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~  313 (426)
T 3c75_H          235 NCRDG-SLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERA  313 (426)
T ss_dssp             EETTS-SEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGG
T ss_pred             EcCCC-CEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccc
Confidence            44444 555556655544422    11111221 235689999888888888999999986554211    000     0


Q ss_pred             ---cCCCeEEEEEeeCCCEEEEEeC----------CCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcE
Q 038577          518 ---HTHDVLTVVYRPDGRQLACSTL----------DGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCF  584 (860)
Q Consensus       518 ---~~~~v~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  584 (860)
                         .......++++|+++.++++..          ++.|.++|+.+.+.+..+.....                     .
T Consensus       314 ~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~---------------------P  372 (426)
T 3c75_H          314 DDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHE---------------------I  372 (426)
T ss_dssp             GTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE---------------------E
T ss_pred             cccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCC---------------------c
Confidence               1122223789999998887743          35799999999999999976553                     6


Q ss_pred             EEEEEecCCC-EEEEec-CCCeEEEEECCCceEEEEE
Q 038577          585 TTLCYSADGS-YILAGG-SSKYICMYDVADQVLLRRF  619 (860)
Q Consensus       585 ~~l~~s~~g~-~l~~~~-~dg~v~vwd~~~~~~~~~~  619 (860)
                      ..+.|+|||+ ++++.. .++.|.++|+.+++.++++
T Consensus       373 ~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          373 DSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             CEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            8999999999 888877 5899999999999999876

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.66  E-value=7.6e-15  Score=167.68  Aligned_cols=278  Identities=10%  Similarity=-0.036  Sum_probs=186.9

Q ss_pred             CCCEEEeeeC------CeEEEEECCCCcEEeecc------CCccCeeEEEEcCCCCEEEEE-----cCCCcEEEEEcccC
Q 038577           22 QNTKLISPVG------NRVSVTDLIKSKTVTLPV------ESSSNICRIAVSPDGTFLLTV-----DENQRCHFINLHCH   84 (860)
Q Consensus        22 dg~~l~~~~~------~~i~v~d~~~~~~~~~~~------~h~~~v~~va~spdg~~la~~-----~~d~~i~vwd~~~~   84 (860)
                      ||+++++...      ..|.+.+..+++...++.      +|...+..++|||||++||.+     +.+..|++||+.++
T Consensus        78 dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg  157 (695)
T 2bkl_A           78 RNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSG  157 (695)
T ss_dssp             ETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTC
T ss_pred             ECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCC
Confidence            8888887642      235666666665544432      455678999999999999954     33468999999999


Q ss_pred             eEE-EEeecCCceeEEEECCCCCEEEEE-eCCe-------------EEEEeCCCCCcccceeEEEEEeeccCCCeEEEEE
Q 038577           85 VVL-HRVRFKYPVNAILFSPNGKYIAVG-TGKL-------------VQIWRSPGFKKEVFAFELIRTLADCNDKVTALNW  149 (860)
Q Consensus        85 ~~~-~~~~~~~~v~~~~fspdg~~la~~-~~~~-------------i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  149 (860)
                      +.+ ...........++|+|||+.|+++ .+..             |++|++.++...   ..++.....|...+..+.|
T Consensus       158 ~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~---~~lv~~~~~~~~~~~~~~~  234 (695)
T 2bkl_A          158 EWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK---DTVVHERTGDPTTFLQSDL  234 (695)
T ss_dssp             CBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG---CEEEECCCCCTTCEEEEEE
T ss_pred             CCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchh---ceEEEecCCCCEEEEEEEE
Confidence            865 211111122789999999999988 3333             999999887531   1134444456678899999


Q ss_pred             cCCCCeEEEeecCC----eEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEc---CCccEEEee
Q 038577          150 SPDSNYLLVGSKDL----AVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIA---RDCYMFSWG  222 (860)
Q Consensus       150 s~d~~~l~s~~~dg----~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~---~dg~i~~w~  222 (860)
                      ||||++|+.++.++    .|.+|+..++       ....+..+...+....+ +++.     .++...   .++.|.+|+
T Consensus       235 SpDG~~l~~~~~~~~~~~~l~~~~~~~~-------~~~~l~~~~~~~~~~~~-~~g~-----l~~~s~~~~~~~~l~~~d  301 (695)
T 2bkl_A          235 SRDGKYLFVYILRGWSENDVYWKRPGEK-------DFRLLVKGVGAKYEVHA-WKDR-----FYVLTDEGAPRQRVFEVD  301 (695)
T ss_dssp             CTTSCCEEEEEEETTTEEEEEEECTTCS-------SCEEEEECSSCCEEEEE-ETTE-----EEEEECTTCTTCEEEEEB
T ss_pred             CCCCCEEEEEEeCCCCceEEEEEcCCCC-------ceEEeecCCCceEEEEe-cCCc-----EEEEECCCCCCCEEEEEe
Confidence            99999999887665    5666654333       34555666666666666 6664     555554   357899998


Q ss_pred             ecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCC-CCceEEEEecCCCCEEEEEEcCCeEEEEECC-CceeEE
Q 038577          223 FSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQA-PSKVTACDYHRGLDMVVVGFSNGVFGLYQMP-DFVCIH  300 (860)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~-~~~~~~  300 (860)
                      +.++..                     ..|...    +..+ ...+..++++ ++.++++...++..++|.+. +++...
T Consensus       302 ~~~~~~---------------------~~~~~l----~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~  355 (695)
T 2bkl_A          302 PAKPAR---------------------ASWKEI----VPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVR  355 (695)
T ss_dssp             TTBCSG---------------------GGCEEE----ECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEE
T ss_pred             CCCCCc---------------------cCCeEE----ecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeE
Confidence            876421                     112111    1122 3457778887 67778888889988887654 455566


Q ss_pred             EEeec-CceeEEEEEeeCCCEEEEEEcc---CCcEEEEEccCceE
Q 038577          301 LLSIS-REKITTAVFNELGNWLVFGCAK---LGQLLVWEWRSESY  341 (860)
Q Consensus       301 ~~~~~-~~~i~~~~~s~~~~~l~~~~~~---~g~i~v~d~~~~~~  341 (860)
                      .+..+ ...+..+.++|+++.+++....   .+.+++||+.+++.
T Consensus       356 ~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          356 TVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             ECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            66554 5677888899999888766543   36799999887653

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.65  E-value=2e-14  Score=143.47  Aligned_cols=242  Identities=8%  Similarity=-0.037  Sum_probs=172.7

Q ss_pred             CeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEe
Q 038577          351 DVNCLAYSPDSQLLA-TGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTF  429 (860)
Q Consensus       351 ~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~  429 (860)
                      ...+++++++|+.++ +...++.|.+|+..+.........+...+.+++++++++.+++.. ++.|.+||...... ..+
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVL  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EEC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eee
Confidence            678999999998776 446788999999765543322223445788999999998666555 88999999865443 333


Q ss_pred             eCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 038577          430 TTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEG  509 (860)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~  509 (860)
                      .......+..++++++|+++++...++ .|.+|+..+.............+.+++++++|+++++...++.|.+||....
T Consensus       103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~-~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~  181 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGAVYVADRGNN-RVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN  181 (270)
T ss_dssp             CCCSCSSEEEEEECTTCCEEEEEGGGT-EEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             ecCCcCCCcceEECCCCCEEEEECCCC-EEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence            333335678999999999666655555 8999987665544333333456789999999997777777889999998776


Q ss_pred             cceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEE
Q 038577          510 KGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCY  589 (860)
Q Consensus       510 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  589 (860)
                      ........+...+..++++++|.++++...++.|.+|+............+                    ...+.++++
T Consensus       182 ~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~--------------------~~~p~~i~~  241 (270)
T 1rwi_B          182 NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTG--------------------LNTPLAVAV  241 (270)
T ss_dssp             CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCS--------------------CSCEEEEEE
T ss_pred             ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCC--------------------CCCceeEEE
Confidence            533322334467899999999987777777889999998665432211111                    124899999


Q ss_pred             ecCCCEEEEecCCCeEEEEECCCceE
Q 038577          590 SADGSYILAGGSSKYICMYDVADQVL  615 (860)
Q Consensus       590 s~~g~~l~~~~~dg~v~vwd~~~~~~  615 (860)
                      +++|+.+++...++.|+++++...+.
T Consensus       242 ~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          242 DSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             CTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             CCCCCEEEEECCCCEEEEEcCCCccc
Confidence            99999888888999999999987653

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.65  E-value=3e-14  Score=162.73  Aligned_cols=274  Identities=12%  Similarity=-0.052  Sum_probs=186.4

Q ss_pred             cCCCCEEEEEEcCC-----eEEEEECCCceeEEEEee------cCceeEEEEEeeCCCEEEEEEccC----CcEEEEEcc
Q 038577          273 HRGLDMVVVGFSNG-----VFGLYQMPDFVCIHLLSI------SREKITTAVFNELGNWLVFGCAKL----GQLLVWEWR  337 (860)
Q Consensus       273 ~~~~~~l~~~~~~g-----~i~~~~~~~~~~~~~~~~------~~~~i~~~~~s~~~~~l~~~~~~~----g~i~v~d~~  337 (860)
                      .|+|++++....++     .+.+.+...++....+..      +...+..++|||||+.++++....    ..|++||+.
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            37888888766543     355555545544333332      233688999999999999877654    479999999


Q ss_pred             CceEEEEecCcccCe--EEEEEcCCCCEEEEEeCCCc-------------EEEEECCCCe----eEEEeecCCCceEEEE
Q 038577          338 SESYILKQQGHYFDV--NCLAYSPDSQLLATGADDNK-------------VKVWTVSSGF----CFVTFTEHTNAVTALH  398 (860)
Q Consensus       338 ~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~~~~dg~-------------i~iwd~~~~~----~~~~~~~~~~~v~~i~  398 (860)
                      +++.+.  ..+...+  ..++|+|||+.|+.++.+..             |++|++.++.    .+.....|...+.++.
T Consensus       156 tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~  233 (695)
T 2bkl_A          156 SGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSD  233 (695)
T ss_dssp             TCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEE
T ss_pred             CCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEE
Confidence            987641  1122222  67899999999999988776             9999998775    3333344556789999


Q ss_pred             EeeCCCEEEEEeCCC----cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEec-C--CCeEEEEECCCCce--
Q 038577          399 FMANNHSLLSASLDG----TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTL-D--SFEIFVWSMKTGRL--  469 (860)
Q Consensus       399 ~~~~~~~l~s~~~dg----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~--~~~i~v~d~~~~~~--  469 (860)
                      |+|||++|+.++.++    .|.+|+..++. .+.+..... ......+ ++|. +++.+. +  .+.|++||+.+++.  
T Consensus       234 ~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~-~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~  309 (695)
T 2bkl_A          234 LSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVG-AKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARAS  309 (695)
T ss_dssp             ECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSS-CCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGG
T ss_pred             ECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCC-ceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccC
Confidence            999999998877665    67777655443 333433332 2333444 5666 554443 2  34899999988763  


Q ss_pred             -EEEecCc-ccCeEEEEEcCCCCEEEEEeCCCcEEEEEcc-CCcceeEEccc-CCCeEEEEEeeCCCEEEEEe----CCC
Q 038577          470 -LDILSGH-EGPVHGLVFSPTNATLASSSWDKTVRLWNVF-EGKGSVESFPH-THDVLTVVYRPDGRQLACST----LDG  541 (860)
Q Consensus       470 -~~~~~~h-~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~----~dg  541 (860)
                       ...+..+ ...+..++++ ++.++++...|+..++|.+. ++.....+..+ ...+..++++|++..++...    ..+
T Consensus       310 ~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~  388 (695)
T 2bkl_A          310 WKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPR  388 (695)
T ss_dssp             CEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEE
T ss_pred             CeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCC
Confidence             4444433 4568888998 77788899999998888765 34433333333 56678888999998776443    346


Q ss_pred             eEEEEeCCCCce
Q 038577          542 QIHFWDPLNGEL  553 (860)
Q Consensus       542 ~i~iwd~~~~~~  553 (860)
                      +|++||+.+++.
T Consensus       389 ~v~~~d~~~g~~  400 (695)
T 2bkl_A          389 QIYKTSVSTGKS  400 (695)
T ss_dssp             EEEEEETTTCCE
T ss_pred             EEEEEECCCCcE
Confidence            899999998874

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.65  E-value=8.3e-14  Score=144.24  Aligned_cols=276  Identities=12%  Similarity=0.007  Sum_probs=201.0

Q ss_pred             CCCCEEEEEEcC-----CeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEc---------cCCcEEEEEccCc
Q 038577          274 RGLDMVVVGFSN-----GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCA---------KLGQLLVWEWRSE  339 (860)
Q Consensus       274 ~~~~~l~~~~~~-----g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---------~~g~i~v~d~~~~  339 (860)
                      ++++.+++....     +.|.++|..+++.+..+.....+  .++++|||++++++..         .++.|.++|..++
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            566777766653     69999999999999999988776  8999999999998863         3478999999999


Q ss_pred             eEEEEecCc-------ccCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeeEEEeecCCCceEEEEEeeCC-CEEEEE
Q 038577          340 SYILKQQGH-------YFDVNCLAYSPDSQLLATGAD--DNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANN-HSLLSA  409 (860)
Q Consensus       340 ~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~  409 (860)
                      +.+..+.-.       ......++++|||++++++..  ++.|.+.|+.+++.+..+.....    ....|++ +.+++.
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~  235 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMN  235 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEE
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEE
Confidence            888776421       123567899999999998874  57899999999999888764221    2334433 566777


Q ss_pred             eCCCcEEEEEccccceeeE----eeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEE--EecC--------
Q 038577          410 SLDGTVRAWDLFRYRNFRT----FTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLD--ILSG--------  475 (860)
Q Consensus       410 ~~dg~i~~wd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~--~~~~--------  475 (860)
                      +.||.+.+.+..+++....    +..........+.+++++..++.....+ .+++.|+..+....  .+.-        
T Consensus       236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g-~V~ViD~~~~~~~v~~~~~~~~~~~i~~  314 (426)
T 3c75_H          236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTG-KIFQADLTAEGATFRAPIEALTEAERAD  314 (426)
T ss_dssp             ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTS-EEEEEEECSSCEEECCCEESSCTTTGGG
T ss_pred             cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCC-cEEEEeccCCceEEeeeeeecccccccc
Confidence            7888888888755544421    2222221223456789998888877766 99999987654321  1110        


Q ss_pred             --cccCeEEEEEcCCCCEEEEEeC----------CCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCC-EEEEEe-CCC
Q 038577          476 --HEGPVHGLVFSPTNATLASSSW----------DKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGR-QLACST-LDG  541 (860)
Q Consensus       476 --h~~~v~~l~~s~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg  541 (860)
                        .......++++|+++.+++...          ++.|.++|..+.+.+..+. -......++|+|||+ +++++. .++
T Consensus       315 g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~-vg~~P~gia~spDg~~~lyv~n~~s~  393 (426)
T 3c75_H          315 DWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE-LGHEIDSINVSQDAEPLLYALSAGTQ  393 (426)
T ss_dssp             TEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTT
T ss_pred             ccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE-CCCCcCeEEEccCCCEEEEEEcCCCC
Confidence              0112223789999887776542          3579999999998655553 333588999999999 888888 589


Q ss_pred             eEEEEeCCCCceeEEE
Q 038577          542 QIHFWDPLNGELMYTI  557 (860)
Q Consensus       542 ~i~iwd~~~~~~~~~~  557 (860)
                      .|.++|+.+++.+.++
T Consensus       394 ~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          394 TLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEEEETTTCCEEEEE
T ss_pred             eEEEEECCCCCEEEEe
Confidence            9999999999999887

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=4.9e-10  Score=129.79  Aligned_cols=539  Identities=10%  Similarity=0.059  Sum_probs=316.4

Q ss_pred             EEEe-CCCEEEeeeCC-eEEEEECCCCcEEeeccC-------CccCeeEEEEcC--CCCEEEEEcCCCcEEEEEcccCeE
Q 038577           18 AVLS-QNTKLISPVGN-RVSVTDLIKSKTVTLPVE-------SSSNICRIAVSP--DGTFLLTVDENQRCHFINLHCHVV   86 (860)
Q Consensus        18 ~~~s-dg~~l~~~~~~-~i~v~d~~~~~~~~~~~~-------h~~~v~~va~sp--dg~~la~~~~d~~i~vwd~~~~~~   86 (860)
                      +... +|+.|-.+..+ .+..||..+++.......       ....|.++...+  +|.+.+ ++.++.+..+|..+++.
T Consensus        71 i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lwi-~t~~~gl~~~~~~~~~~  149 (781)
T 3v9f_A           71 VYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKGLWV-CTYYRGIEYLDIATGKF  149 (781)
T ss_dssp             EEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSEEEE-EESSSCEEEEETTTTEE
T ss_pred             EEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCCEEE-EECCCCeeEEECCCCeE
Confidence            4444 56624445554 899999998876554211       123688998888  776544 44345688999887765


Q ss_pred             EEEee------cCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEee
Q 038577           87 LHRVR------FKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGS  160 (860)
Q Consensus        87 ~~~~~------~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~  160 (860)
                      .....      ....|.++...++|.+.+...++.+..||..+++..................|.++...++|.+.+ ++
T Consensus       150 ~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt  228 (781)
T 3v9f_A          150 THYNKSTVPALPSEQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GT  228 (781)
T ss_dssp             EEESTTTCTTCSCCCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEE-EE
T ss_pred             EeeccCcccCCCccceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-Ee
Confidence            44321      124578888888887776555557889998776421000000000001235689999988887555 44


Q ss_pred             cCCeEEEEeecccccCcccccce--EeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCC
Q 038577          161 KDLAVRLFYVKEKLKGIHTNKPF--LLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSE  238 (860)
Q Consensus       161 ~dg~v~vwd~~~~~~~~~~~~~~--~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~  238 (860)
                      .+ -+.+||..+. .........  ........|.++...+++      .|..++..+-+.+++..+........     
T Consensus       229 ~~-Gl~~~d~~~~-~~~~~~~~~~~~~~l~~~~i~~i~~d~~g------~lWigt~~~Gl~~~~~~~~~~~~~~~-----  295 (781)
T 3v9f_A          229 SK-GLALFNANTE-TFTNFHNNPGNIHGALSSYIFSIKQLKDN------KLWIATELNGIMILDLQQNQFLLPEQ-----  295 (781)
T ss_dssp             TT-EEEEEETTTT-EEEC-----------CCCCEEEEEECTTS------EEEEEESSSCEEEEETTCC------------
T ss_pred             CC-cHheECCCCC-cEEEEEcCCCccccccCceEEEEEECCCC------CEEEEeCCCCeEEECCCCCeeeeeec-----
Confidence            44 5888887654 110000000  001124568888888777      47777775667888876543210000     


Q ss_pred             CCCCCCCcceeeeEEee--eeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEe---------ecCc
Q 038577          239 PPSPGTPERRVKKWGLL--RKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLS---------ISRE  307 (860)
Q Consensus       239 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~---------~~~~  307 (860)
                                 ..+...  ...........|.++...++|. +.+|+.++-|..++...........         ....
T Consensus       296 -----------~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  363 (781)
T 3v9f_A          296 -----------IRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNK  363 (781)
T ss_dssp             -------------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSS
T ss_pred             -----------cccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCc
Confidence                       000000  0000112345689999988886 6677777778888876544332211         1234


Q ss_pred             eeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEe---cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE
Q 038577          308 KITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ---QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCF  384 (860)
Q Consensus       308 ~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  384 (860)
                      .|.++...++|... +++.. +-|..|+..++......   ......|.++...++|.+. .|+.++.+..++..+++..
T Consensus       364 ~v~~i~~d~~g~lW-igt~~-~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~  440 (781)
T 3v9f_A          364 VVSSVCDDGQGKLW-IGTDG-GGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLW-FGTYLGNISYYNTRLKKFQ  440 (781)
T ss_dssp             CEEEEEECTTSCEE-EEEBS-SCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEE-EEETTEEEEEECSSSCEEE
T ss_pred             ceEEEEEcCCCCEE-EEeCC-CcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEE-EEeccCCEEEEcCCCCcEE
Confidence            68888888777654 44433 66888887765433211   1234568899988888654 4666677999998776543


Q ss_pred             EEee--cCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCC----CCCcEEEEEECCCCCEEEEEecCCCe
Q 038577          385 VTFT--EHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTP----SSRQFVSLASDQSGEVICAGTLDSFE  458 (860)
Q Consensus       385 ~~~~--~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~  458 (860)
                      ....  .....|.++...+++. |..++. +.+..||..+++........    ....+.++..+++|.+.+....+  -
T Consensus       441 ~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~--G  516 (781)
T 3v9f_A          441 IIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGG--G  516 (781)
T ss_dssp             ECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSS--C
T ss_pred             EeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCC--C
Confidence            3221  1346788988887775 555555 56888998765543322211    13568899999999876554434  3


Q ss_pred             EEEEECCCCceEEEecC---cccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcc----cCCCeEEEEEeeCC
Q 038577          459 IFVWSMKTGRLLDILSG---HEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFP----HTHDVLTVVYRPDG  531 (860)
Q Consensus       459 i~v~d~~~~~~~~~~~~---h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~~  531 (860)
                      +..||..+++.......   ....|.++...++|.+.++. .+|.+..||..+++. .....    ....|.++...++|
T Consensus       517 l~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g  594 (781)
T 3v9f_A          517 VGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKNG  594 (781)
T ss_dssp             EEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSSS
T ss_pred             EEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcE-EEccccCCCCCceEEEEEECCCC
Confidence            88899877654432211   23568999998888865544 467558888876652 22221    23457888888888


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECC
Q 038577          532 RQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVA  611 (860)
Q Consensus       532 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~  611 (860)
                      ++.++ +.+| |..|+..+++. ..+.........              .-...++...++|++++ |+.+| +..++..
T Consensus       595 ~lW~~-t~~G-l~~~~~~~~~~-~~~~~~dGl~~~--------------~f~~~~~~~~~~G~l~~-g~~~G-l~~f~p~  655 (781)
T 3v9f_A          595 NIWAS-TNTG-ISCYITSKKCF-YTYDHSNNIPQG--------------SFISGCVTKDHNGLIYF-GSING-LCFFNPD  655 (781)
T ss_dssp             CEEEE-CSSC-EEEEETTTTEE-EEECGGGTCCSS--------------CEEEEEEEECTTSCEEE-EETTE-EEEECSC
T ss_pred             CEEEE-cCCc-eEEEECCCCce-EEecccCCcccc--------------ccccCceEECCCCEEEE-ECCCc-eEEEChh
Confidence            76555 4555 78888876543 333322221100              01135677788898666 55667 5556654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.64  E-value=1.1e-13  Score=137.13  Aligned_cols=235  Identities=11%  Similarity=0.138  Sum_probs=183.4

Q ss_pred             EEEEEccCCcEEEEEccCceEEEEecCcc-cCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCC-CceEEEE
Q 038577          321 LVFGCAKLGQLLVWEWRSESYILKQQGHY-FDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHT-NAVTALH  398 (860)
Q Consensus       321 l~~~~~~~g~i~v~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~i~  398 (860)
                      ++++++.++.|.+||.++++.+.++..+. ..+.++.++|+|++++  +.++.|..||. +++.+..+..+. ..+.++.
T Consensus         7 ~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~   83 (276)
T 3no2_A            7 LLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTAR   83 (276)
T ss_dssp             EEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEE
T ss_pred             EEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccE
Confidence            34444556999999999999999987765 4788999999999888  34678999998 899998888653 5788999


Q ss_pred             EeeCCCEEEEEeC-CCcEEEEEccccceeeEeeCCCC-----CcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEE
Q 038577          399 FMANNHSLLSASL-DGTVRAWDLFRYRNFRTFTTPSS-----RQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDI  472 (860)
Q Consensus       399 ~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~  472 (860)
                      +.++|+.+++.+. ++.+..+|. +++.+..+.....     .....+++.++|+++++...++ .|..||.+ |+.+..
T Consensus        84 ~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~-~v~~~d~~-G~~~w~  160 (276)
T 3no2_A           84 ILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATS-EVREIAPN-GQLLNS  160 (276)
T ss_dssp             ECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTT-EEEEECTT-SCEEEE
T ss_pred             ECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCC-EEEEECCC-CCEEEE
Confidence            9999999999887 777887875 6777666653221     1234567899999998888777 99999998 999998


Q ss_pred             ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccC------CCeEEEEEeeCCCEEEEEeCC------
Q 038577          473 LSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHT------HDVLTVVYRPDGRQLACSTLD------  540 (860)
Q Consensus       473 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~d------  540 (860)
                      +..+ ..+.++.+.++|..+++++.++.|..+|..+++.+.+.....      ..+..++..++|+++++....      
T Consensus       161 ~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~  239 (276)
T 3no2_A          161 VKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAG  239 (276)
T ss_dssp             EECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGG
T ss_pred             EECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCcccccc
Confidence            8764 456678889999999999888899999999898776665322      237888999999988887421      


Q ss_pred             --CeEEEEeC-CCCceeEEEecccc
Q 038577          541 --GQIHFWDP-LNGELMYTIEGRRD  562 (860)
Q Consensus       541 --g~i~iwd~-~~~~~~~~~~~~~~  562 (860)
                        +..+++++ .+|+.+.++.....
T Consensus       240 ~~~~~~~~~~~~~g~~~W~~~~~~~  264 (276)
T 3no2_A          240 KGKHPQLVEIDSEGKVVWQLNDKVK  264 (276)
T ss_dssp             GSCCCSEEEECTTSBEEEEECCTTT
T ss_pred             ccCCceEEEECCCCCEEEEecCccc
Confidence              23456665 58899888877665

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.63  E-value=7e-14  Score=139.57  Aligned_cols=243  Identities=12%  Similarity=0.038  Sum_probs=172.1

Q ss_pred             eeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 038577          308 KITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTF  387 (860)
Q Consensus       308 ~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  387 (860)
                      ...+++++++|+.++++...++.|.+|+..+.........+...+.+++++++|+.+++.. ++.|.+||..........
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~  103 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP  103 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence            6678999999985442545558999999766543332233345678999999998666655 889999998765443222


Q ss_pred             ecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCC
Q 038577          388 TEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTG  467 (860)
Q Consensus       388 ~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~  467 (860)
                      ......+.+++++++++.+++...++.|.+|+..+...... .......+..++++++|+++++...++ .|.+||....
T Consensus       104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~-~~~~~~~p~~i~~~~~g~l~v~~~~~~-~i~~~~~~~~  181 (270)
T 1rwi_B          104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL-PFTGLNDPDGVAVDNSGNVYVTDTDNN-RVVKLEAESN  181 (270)
T ss_dssp             CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC-CCCSCCSCCCEEECTTCCEEEEEGGGT-EEEEECTTTC
T ss_pred             cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee-ccccCCCceeEEEeCCCCEEEEECCCC-EEEEEecCCC
Confidence            22336789999999998777777788999997655433221 112223567899999998666655555 8999998877


Q ss_pred             ceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEe
Q 038577          468 RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWD  547 (860)
Q Consensus       468 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  547 (860)
                      ........+...+.+++++++|.++++...++.|.+||............+...+.+++++|+|+++++...++.|++|+
T Consensus       182 ~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~  261 (270)
T 1rwi_B          182 NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT  261 (270)
T ss_dssp             CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence            65544444446789999999998777777788999999876543322223346789999999999888888899999999


Q ss_pred             CCCCce
Q 038577          548 PLNGEL  553 (860)
Q Consensus       548 ~~~~~~  553 (860)
                      +...+.
T Consensus       262 ~~~~~~  267 (270)
T 1rwi_B          262 SLEHHH  267 (270)
T ss_dssp             CCGGGS
T ss_pred             CCCccc
Confidence            876553

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.62  E-value=2.9e-12  Score=130.04  Aligned_cols=277  Identities=6%  Similarity=0.009  Sum_probs=195.6

Q ss_pred             CCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEE-EEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce
Q 038577          262 QAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIH-LLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES  340 (860)
Q Consensus       262 ~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~  340 (860)
                      .....+.++++.++++..++...++.|.+|+.. ++... .+......+..+++.++|...++. ..++.|..+|.. ++
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~-~~~~~v~~~d~~-g~   93 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTE-NGANKIGKLSKK-GG   93 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEE-TTTTEEEEECTT-SC
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEe-cCCCeEEEECCC-CC
Confidence            345678999999999977777678999999987 54433 122223578899999998865544 434889999988 54


Q ss_pred             EEE-EecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE-EeecCCCceEEEEEeeCCCEEEEEeCCCcEEEE
Q 038577          341 YIL-KQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFV-TFTEHTNAVTALHFMANNHSLLSASLDGTVRAW  418 (860)
Q Consensus       341 ~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~w  418 (860)
                      ... ........+.++++.++|.++++...++.|..|+.. ++... .+......+.++++.++++.+++...++.|..|
T Consensus        94 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~  172 (300)
T 2qc5_A           94 FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRI  172 (300)
T ss_dssp             EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred             eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEE
Confidence            432 223344678999999999988877768899999987 55442 233345678999999999866666667889999


Q ss_pred             EccccceeeEeeC-CCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEE-ecCcccCeEEEEEcCCCCEEEEEe
Q 038577          419 DLFRYRNFRTFTT-PSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDI-LSGHEGPVHGLVFSPTNATLASSS  496 (860)
Q Consensus       419 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~~  496 (860)
                      +. +++... +.. .....+..++++++|.+.++....+ .|.+||. +++.... +..+...+.+++++++|++.++..
T Consensus       173 ~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~-~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~  248 (300)
T 2qc5_A          173 TN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGN-KIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEW  248 (300)
T ss_dssp             CT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTT-EEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET
T ss_pred             CC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCC-EEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEecc
Confidence            98 554433 332 2334678999999998766555555 8999998 5554433 334556789999999999777766


Q ss_pred             CCCcEEEEEccCCcceeE-EcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCC
Q 038577          497 WDKTVRLWNVFEGKGSVE-SFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPL  549 (860)
Q Consensus       497 ~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  549 (860)
                      .++.|..||. ++..... .......+.+++++++|++.++.. . .|..+|.+
T Consensus       249 ~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          249 GANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             TTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             CCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence            6789999998 4432221 222445688999999998665554 4 77777753

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.62  E-value=1.8e-13  Score=157.35  Aligned_cols=277  Identities=10%  Similarity=0.058  Sum_probs=183.5

Q ss_pred             CCCEEEeeeC------CeEEEEECC---CCcEEee------ccCCccCeeEEEEcCCCCEEEEEcCC-----CcEEEEEc
Q 038577           22 QNTKLISPVG------NRVSVTDLI---KSKTVTL------PVESSSNICRIAVSPDGTFLLTVDEN-----QRCHFINL   81 (860)
Q Consensus        22 dg~~l~~~~~------~~i~v~d~~---~~~~~~~------~~~h~~~v~~va~spdg~~la~~~~d-----~~i~vwd~   81 (860)
                      ||+++++...      ..|.+.+..   +++...+      ..+|...+..++|||||++||++..+     ..|++||+
T Consensus       117 dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl  196 (741)
T 1yr2_A          117 RGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGV  196 (741)
T ss_dssp             ETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEET
T ss_pred             ECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEEC
Confidence            8999887641      235555655   4544433      22344578899999999999987543     46999999


Q ss_pred             ccCeEEEEeecCCceeEEEECCCCCEEEEEe-C--------------CeEEEEeCCCCCcccceeEEEEEeeccCCCeEE
Q 038577           82 HCHVVLHRVRFKYPVNAILFSPNGKYIAVGT-G--------------KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTA  146 (860)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~fspdg~~la~~~-~--------------~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~  146 (860)
                      .+++.+........+..++|+|| +.|+++. +              ..|++|++.++...   -.++.....+...+..
T Consensus       197 ~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~---~~lv~~~~~~~~~~~~  272 (741)
T 1yr2_A          197 ADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSA---DQPVFATPELPKRGHG  272 (741)
T ss_dssp             TTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGG---CEEEECCTTCTTCEEE
T ss_pred             CCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchh---CEEEeccCCCCeEEEE
Confidence            99988765333333468999999 9888872 2              24899998776521   1123333344446889


Q ss_pred             EEEcCCCCeEEEeecCC-----eEEEEeecccccCccccc-ceEeecCCCcEEEEEEccCCCCCccceEEEEcCC----c
Q 038577          147 LNWSPDSNYLLVGSKDL-----AVRLFYVKEKLKGIHTNK-PFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARD----C  216 (860)
Q Consensus       147 l~~s~d~~~l~s~~~dg-----~v~vwd~~~~~~~~~~~~-~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~d----g  216 (860)
                      +.|||||++|+..+.++     .|.+||+.++ .    .. ...+..+...+.... +|+++     .|+..+.+    +
T Consensus       273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~-~----~~~~~~l~~~~~~~~~~~-~~dg~-----~l~~~s~~~~~~~  341 (741)
T 1yr2_A          273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNG-K----IGPVTALIPDLKAQWDFV-DGVGD-----QLWFVSGDGAPLK  341 (741)
T ss_dssp             EEECTTSCEEEEEEECTTCSCCEEEEEEEETT-E----ECCCEEEECSSSSCEEEE-EEETT-----EEEEEECTTCTTC
T ss_pred             EEECCCCCEEEEEEEccCCCcceEEEEECCCC-C----CcccEEecCCCCceEEEE-eccCC-----EEEEEECCCCCCC
Confidence            99999999999877554     8999998765 1    12 445555655555553 48888     78777654    4


Q ss_pred             cEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECC-C
Q 038577          217 YMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMP-D  295 (860)
Q Consensus       217 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~-~  295 (860)
                      .|.+|++.+..                      ..|..    .+..+...+..+.+. ++.++++...+|..++|.+. +
T Consensus       342 ~l~~~d~~~~~----------------------~~~~~----l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~  394 (741)
T 1yr2_A          342 KIVRVDLSGST----------------------PRFDT----VVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLD  394 (741)
T ss_dssp             EEEEEECSSSS----------------------CEEEE----EECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETT
T ss_pred             EEEEEeCCCCc----------------------cccEE----EecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC
Confidence            58888876521                      02221    122333456677776 55677788888887776553 4


Q ss_pred             ceeEEEEeec-CceeEEEEEeeCCCEEEEEEcc---CCcEEEEEccCce
Q 038577          296 FVCIHLLSIS-REKITTAVFNELGNWLVFGCAK---LGQLLVWEWRSES  340 (860)
Q Consensus       296 ~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~~---~g~i~v~d~~~~~  340 (860)
                      +.....+..+ ...+..+.++|+++.+++....   .++++.||+.+++
T Consensus       395 g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          395 GKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             SCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             CCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            5556666553 5678889999999877765443   3689999998876

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.62  E-value=3.8e-12  Score=129.19  Aligned_cols=275  Identities=11%  Similarity=0.003  Sum_probs=192.1

Q ss_pred             CceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEE-EecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE
Q 038577          306 REKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYIL-KQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCF  384 (860)
Q Consensus       306 ~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  384 (860)
                      ...+.++++.++|+..++. ..++.|.+||.. ++... ....+...+.++++.++|...++...++.|..||.. ++..
T Consensus        19 ~~~p~~i~~d~~g~l~v~~-~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~   95 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQ-HKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT   95 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEE-TTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             CCCcceeeECCCCCEEEEc-CCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE
Confidence            4577889999998866554 344899999988 54433 223334678999999999888777667899999987 5543


Q ss_pred             E-EeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCC-CCCcEEEEEECCCCCEEEEEecCCCeEEEE
Q 038577          385 V-TFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTP-SSRQFVSLASDQSGEVICAGTLDSFEIFVW  462 (860)
Q Consensus       385 ~-~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~  462 (860)
                      . ........+.++++.++++.+++...++.|..||.. ++.. .+..+ ....+..++++++|++.++...++ .|..|
T Consensus        96 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~-~i~~~  172 (300)
T 2qc5_A           96 EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSDNALWFTENQNN-SIGRI  172 (300)
T ss_dssp             EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSSEEEEETTTT-EEEEE
T ss_pred             EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCceeEEECCCCCEEEEecCCC-eEEEE
Confidence            2 222244678999999999887777768899999986 4443 23222 345678999999999555544444 89999


Q ss_pred             ECCCCceEEE-ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeE-EcccCCCeEEEEEeeCCCEEEEEeCC
Q 038577          463 SMKTGRLLDI-LSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVE-SFPHTHDVLTVVYRPDGRQLACSTLD  540 (860)
Q Consensus       463 d~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d  540 (860)
                      |. +++.... ...+...+.++++.++|.+.++....+.|.+||. +++.... .......+.+++++++|++.++...+
T Consensus       173 ~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~  250 (300)
T 2qc5_A          173 TN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGA  250 (300)
T ss_dssp             CT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTT
T ss_pred             CC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCC
Confidence            98 5655432 2234567899999999987777666778999998 4442222 22345678999999999976666667


Q ss_pred             CeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEEC
Q 038577          541 GQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV  610 (860)
Q Consensus       541 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~  610 (860)
                      +.|..||. +++.. .+.....                  ...+.+++++++|++.++.. . .|..+|.
T Consensus       251 ~~i~~~~~-~g~~~-~~~~~~~------------------~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          251 NQIGRITN-DNTIQ-EYQLQTE------------------NAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             TEEEEECT-TSCEE-EEECCST------------------TCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             CeEEEECC-CCcEE-EEECCcc------------------CCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence            89999998 45433 2221100                  12368899999999777665 4 6776665

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.61  E-value=2.9e-13  Score=155.64  Aligned_cols=275  Identities=13%  Similarity=0.084  Sum_probs=185.3

Q ss_pred             cCCCCEEEEEEcCC-----eEEEEECC---CceeEEEEee------cCceeEEEEEeeCCCEEEEEEccCC----cEEEE
Q 038577          273 HRGLDMVVVGFSNG-----VFGLYQMP---DFVCIHLLSI------SREKITTAVFNELGNWLVFGCAKLG----QLLVW  334 (860)
Q Consensus       273 ~~~~~~l~~~~~~g-----~i~~~~~~---~~~~~~~~~~------~~~~i~~~~~s~~~~~l~~~~~~~g----~i~v~  334 (860)
                      .|+|++++....++     .+.+.+..   .++....+..      +...+..++|||||+.++++....|    .|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            38899888666543     34444443   3333332211      2236889999999999999887655    49999


Q ss_pred             EccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCc--------------EEEEECCCCee--EEEee--cCCCceEE
Q 038577          335 EWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNK--------------VKVWTVSSGFC--FVTFT--EHTNAVTA  396 (860)
Q Consensus       335 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--------------i~iwd~~~~~~--~~~~~--~~~~~v~~  396 (860)
                      |+.+++.+... .+...+..++|+|| +.|+.++.++.              |++|++.++..  ...+.  .+...+..
T Consensus       195 dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~  272 (741)
T 1yr2_A          195 GVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG  272 (741)
T ss_dssp             ETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred             ECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence            99998875432 12222357899999 98988876654              89999877652  22232  23345889


Q ss_pred             EEEeeCCCEEEEEeCCC-----cEEEEEcccc--ceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC---CeEEEEECCC
Q 038577          397 LHFMANNHSLLSASLDG-----TVRAWDLFRY--RNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS---FEIFVWSMKT  466 (860)
Q Consensus       397 i~~~~~~~~l~s~~~dg-----~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~i~v~d~~~  466 (860)
                      +.|+|||++|+..+.++     .|.+||+.++  +..+.+....... ... ++|+|+.++..+.++   +.|++||+.+
T Consensus       273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~-~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~  350 (741)
T 1yr2_A          273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQ-WDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSG  350 (741)
T ss_dssp             EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSC-EEE-EEEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred             EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCce-EEE-EeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence            99999999988777544     7999999876  3144554443333 233 348999888877642   3699999987


Q ss_pred             C--ceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcc-CCcceeEEcc-cCCCeEEEEEeeCCCEEEEEe----
Q 038577          467 G--RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVF-EGKGSVESFP-HTHDVLTVVYRPDGRQLACST----  538 (860)
Q Consensus       467 ~--~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~----  538 (860)
                      +  +....+..+...+.+++++ ++.++++...|+..++|.+. ++.....+.. ....+..+.++|+++.++...    
T Consensus       351 ~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~  429 (741)
T 1yr2_A          351 STPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFT  429 (741)
T ss_dssp             SSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETT
T ss_pred             CccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCC
Confidence            5  3444555555667778887 66778888889988877664 3433333332 456788999999988666332    


Q ss_pred             CCCeEEEEeCCCCc
Q 038577          539 LDGQIHFWDPLNGE  552 (860)
Q Consensus       539 ~dg~i~iwd~~~~~  552 (860)
                      ..++|++||+.+++
T Consensus       430 ~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          430 QPATVLALDPATAK  443 (741)
T ss_dssp             EEEEEEEEETTTTE
T ss_pred             CCCEEEEEECCCCc
Confidence            34789999998887

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.56  E-value=4.1e-12  Score=129.92  Aligned_cols=240  Identities=9%  Similarity=0.041  Sum_probs=168.7

Q ss_pred             ccCeEEEEEcCCCCEEEE-------EeCCCcEEEEECCCCeeEEEee----cCCCceEEEEEeeC-CCEEEEEeCCCcEE
Q 038577          349 YFDVNCLAYSPDSQLLAT-------GADDNKVKVWTVSSGFCFVTFT----EHTNAVTALHFMAN-NHSLLSASLDGTVR  416 (860)
Q Consensus       349 ~~~v~~~~~s~~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~i~~~~~-~~~l~s~~~dg~i~  416 (860)
                      .....+++|+++|..+++       +..++.|.+||..+++......    ++...+.+++++++ ++.++ ++..+.|.
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~~~l~   95 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRLGLL   95 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EETTTEEE
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EECCCCEE
Confidence            345688999999988777       5678899999988776543222    14467899999999 65444 44445799


Q ss_pred             EEEccccceeeE-eeCC---CCCcEEEEEECCCCCEEEEEecCC--------------CeEEEEECCCCceEEEecCccc
Q 038577          417 AWDLFRYRNFRT-FTTP---SSRQFVSLASDQSGEVICAGTLDS--------------FEIFVWSMKTGRLLDILSGHEG  478 (860)
Q Consensus       417 ~wd~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~l~~~~~~~--------------~~i~v~d~~~~~~~~~~~~h~~  478 (860)
                      +||.. ++.... ....   ....+..++++++|+++++...++              +.|+.||.. ++..... .+..
T Consensus        96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~  172 (314)
T 1pjx_A           96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQ  172 (314)
T ss_dssp             EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEES
T ss_pred             EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCCC
Confidence            99987 554332 2211   123467899999999887766541              378888876 6554333 3445


Q ss_pred             CeEEEEEc----CCCCEEEEE-eCCCcEEEEEcc-CCcc-----eeEEcccC-CCeEEEEEeeCCCEEEEEeCCCeEEEE
Q 038577          479 PVHGLVFS----PTNATLASS-SWDKTVRLWNVF-EGKG-----SVESFPHT-HDVLTVVYRPDGRQLACSTLDGQIHFW  546 (860)
Q Consensus       479 ~v~~l~~s----~~~~~l~s~-~~dg~i~iwd~~-~~~~-----~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iw  546 (860)
                      ....++++    |+++.++.+ ..++.|.+||.. +++.     ......+. ..+..++++++|+++++...++.|.+|
T Consensus       173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~  252 (314)
T 1pjx_A          173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF  252 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEE
Confidence            67889999    999765554 567899999986 3331     11111222 567889999999988888788999999


Q ss_pred             eCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEE-EecCCCeEEEEECCC
Q 038577          547 DPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYIL-AGGSSKYICMYDVAD  612 (860)
Q Consensus       547 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~-~~~~dg~v~vwd~~~  612 (860)
                      |..+++.+..+..+..                    .+.+++|+|+|++|+ +...++.|..|++..
T Consensus       253 d~~~g~~~~~~~~~~~--------------------~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          253 GPDGGQPKMRIRCPFE--------------------KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CTTCBSCSEEEECSSS--------------------CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             cCCCCcEeEEEeCCCC--------------------CceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            9987877666654422                    489999999999554 455668899998864

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.55  E-value=2.8e-13  Score=138.11  Aligned_cols=267  Identities=9%  Similarity=-0.002  Sum_probs=183.3

Q ss_pred             CEEEEEEccCC----cEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeeE
Q 038577          319 NWLVFGCAKLG----QLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGA----------DDNKVKVWTVSSGFCF  384 (860)
Q Consensus       319 ~~l~~~~~~~g----~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~  384 (860)
                      ..+++....++    .+.++|..+++.+.++.....+  .+.++||+++++++.          .++.|.+||+.+++.+
T Consensus        32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv  109 (368)
T 1mda_H           32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI  109 (368)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE
T ss_pred             CeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE
Confidence            44445444434    8889999999999988655555  799999999998886          3678999999999999


Q ss_pred             EEeecC-------CCceEEEEEeeCCCEEEEEeC--CCcEEE--EEccccceeeEeeCCCCCcEEEEEECCCCCEE-EEE
Q 038577          385 VTFTEH-------TNAVTALHFMANNHSLLSASL--DGTVRA--WDLFRYRNFRTFTTPSSRQFVSLASDQSGEVI-CAG  452 (860)
Q Consensus       385 ~~~~~~-------~~~v~~i~~~~~~~~l~s~~~--dg~i~~--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~  452 (860)
                      .++..+       ......++++|||++++++..  +..+.+  +|..+   ...+..+..     ..+.|+++.. ++.
T Consensus       110 ~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~-----~~~~p~g~~~~~~~  181 (368)
T 1mda_H          110 ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC-----FHIHPGAAATHYLG  181 (368)
T ss_dssp             EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC-----CCCEEEETTEEECC
T ss_pred             EEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc-----eEEccCCCeEEEEE
Confidence            988644       134678999999999998874  456888  89877   444543321     1123444322 233


Q ss_pred             ecCCCeEEEEECCC-----CceEE----EecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcc-eeEEcc-----
Q 038577          453 TLDSFEIFVWSMKT-----GRLLD----ILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKG-SVESFP-----  517 (860)
Q Consensus       453 ~~~~~~i~v~d~~~-----~~~~~----~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~-----  517 (860)
                      +.++ .+.+.|+.+     ++...    .+.-...+.   . ++++..++..+. +.+.+.|+..... ......     
T Consensus       182 ~~dg-~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~  255 (368)
T 1mda_H          182 SCPA-SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESG  255 (368)
T ss_dssp             CCTT-SCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTH
T ss_pred             cCCC-CEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccc
Confidence            3444 667777775     33321    111112333   3 666777666666 9999999865431 111110     


Q ss_pred             ------cCCCeEEEEEeeCCCEEEEEeC-C--------CeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCC
Q 038577          518 ------HTHDVLTVVYRPDGRQLACSTL-D--------GQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGK  582 (860)
Q Consensus       518 ------~~~~v~~~~~s~~~~~l~~~~~-d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  582 (860)
                            .......++++||++.++++.. .        +.+.++|+.+++.+..+.....                    
T Consensus       256 ~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~--------------------  315 (368)
T 1mda_H          256 RKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHD--------------------  315 (368)
T ss_dssp             HHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEE--------------------
T ss_pred             ccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCC--------------------
Confidence                  1111222689999998887643 2        3567999999999998876653                    


Q ss_pred             cEEEEEEecCCCE-EEEec-CCCeEEEEECCCceEEEEEeec
Q 038577          583 CFTTLCYSADGSY-ILAGG-SSKYICMYDVADQVLLRRFQIT  622 (860)
Q Consensus       583 ~i~~l~~s~~g~~-l~~~~-~dg~v~vwd~~~~~~~~~~~~~  622 (860)
                       ...++|+|||++ +++.. .++.|.++|+.+++.+++++..
T Consensus       316 -p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg  356 (368)
T 1mda_H          316 -SDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             -ECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             -cceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence             789999999984 55555 5899999999999999887643

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.53  E-value=7.8e-12  Score=127.83  Aligned_cols=242  Identities=7%  Similarity=0.018  Sum_probs=171.7

Q ss_pred             ccCeeEEEEcCCCCEEEE-------EcCCCcEEEEEcccCeEEEEee-----cCCceeEEEECCC-CCEEEEEeCCeEEE
Q 038577           52 SSNICRIAVSPDGTFLLT-------VDENQRCHFINLHCHVVLHRVR-----FKYPVNAILFSPN-GKYIAVGTGKLVQI  118 (860)
Q Consensus        52 ~~~v~~va~spdg~~la~-------~~~d~~i~vwd~~~~~~~~~~~-----~~~~v~~~~fspd-g~~la~~~~~~i~i  118 (860)
                      -....+++|+++|+++++       ...++.|.+||..+++......     +...+.+++++|+ |+++++...+.|.+
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~   96 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV   96 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEE
Confidence            345789999999987777       4667899999988887654332     3467899999999 87666665668999


Q ss_pred             EeCCCCCcccceeEEEEEe-e-----ccCCCeEEEEEcCCCCeEEEeecC---------------CeEEEEeecccccCc
Q 038577          119 WRSPGFKKEVFAFELIRTL-A-----DCNDKVTALNWSPDSNYLLVGSKD---------------LAVRLFYVKEKLKGI  177 (860)
Q Consensus       119 wd~~~~~~~~~~~~~~~~~-~-----~h~~~v~~l~~s~d~~~l~s~~~d---------------g~v~vwd~~~~~~~~  177 (860)
                      ||.. ++.        ..+ .     .+...+.+++++++|++.++...+               +.|..|+.+ +    
T Consensus        97 ~d~~-g~~--------~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g----  162 (314)
T 1pjx_A           97 VQTD-GTF--------EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G----  162 (314)
T ss_dssp             EETT-SCE--------EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S----
T ss_pred             EeCC-CCE--------EEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C----
Confidence            9988 542        222 1     112458899999999877776554               456666654 3    


Q ss_pred             ccccceEeecCCCcEEEEEEc----cCCCCCccceEEEE-cCCccEEEeeecC-CCCCCccccCCCCCCCCCCCcceeee
Q 038577          178 HTNKPFLLLGHRDSVVGCFFS----VDKKTDKVNRIYTI-ARDCYMFSWGFSG-NDGKIDETMEDSEPPSPGTPERRVKK  251 (860)
Q Consensus       178 ~~~~~~~~~~h~~~i~~~~~~----~~~~~~~~~~l~s~-~~dg~i~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (860)
                        . ...+..+......++++    ++++     .++.+ ..++.|.+|+... +..                     ..
T Consensus       163 --~-~~~~~~~~~~~~~i~~~~~~d~dg~-----~l~v~~~~~~~i~~~~~~~~g~~---------------------~~  213 (314)
T 1pjx_A          163 --Q-MIQVDTAFQFPNGIAVRHMNDGRPY-----QLIVAETPTKKLWSYDIKGPAKI---------------------EN  213 (314)
T ss_dssp             --C-EEEEEEEESSEEEEEEEECTTSCEE-----EEEEEETTTTEEEEEEEEETTEE---------------------EE
T ss_pred             --C-EEEeccCCCCcceEEEecccCCCCC-----EEEEEECCCCeEEEEECCCCCcc---------------------cc
Confidence              1 22223334456889999    9986     55555 5678999999762 210                     00


Q ss_pred             EEeeeeccccCCC-CceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCc
Q 038577          252 WGLLRKDDFSQAP-SKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQ  330 (860)
Q Consensus       252 ~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~  330 (860)
                      .  .....+..+. ..+..++++++|+++++...++.|.+|+..+++....+..+...+.+++++++|+.|+++...++.
T Consensus       214 ~--~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~  291 (314)
T 1pjx_A          214 K--KVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNA  291 (314)
T ss_dssp             E--EEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTE
T ss_pred             c--eEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCe
Confidence            0  0011122232 567889999999988887788999999998777777777776789999999999988888776689


Q ss_pred             EEEEEccC
Q 038577          331 LLVWEWRS  338 (860)
Q Consensus       331 i~v~d~~~  338 (860)
                      |..|++..
T Consensus       292 l~~~~~~~  299 (314)
T 1pjx_A          292 VWKFEWQR  299 (314)
T ss_dssp             EEEEECSS
T ss_pred             EEEEeCCC
Confidence            99998764

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.52  E-value=1.2e-07  Score=104.55  Aligned_cols=522  Identities=11%  Similarity=0.036  Sum_probs=303.8

Q ss_pred             CCEEEeeeCCeEEEEECCCCcEEe-eccCCccCeeEEEEcCCCCEEEEEc-CCCcEEEEEcccCeEEEEeec-CCceeEE
Q 038577           23 NTKLISPVGNRVSVTDLIKSKTVT-LPVESSSNICRIAVSPDGTFLLTVD-ENQRCHFINLHCHVVLHRVRF-KYPVNAI   99 (860)
Q Consensus        23 g~~l~~~~~~~i~v~d~~~~~~~~-~~~~h~~~v~~va~spdg~~la~~~-~d~~i~vwd~~~~~~~~~~~~-~~~v~~~   99 (860)
                      ..+|+++.++.|+..|+.+..... .+...-..+..++|++++..|..++ .++.|..+++........+.. ......+
T Consensus         6 ~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl   85 (628)
T 4a0p_A            6 EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM   85 (628)
T ss_dssp             CCEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred             CcEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceE
Confidence            347888888999999998765433 3333446788999999777766554 468888888876543333332 2457789


Q ss_pred             EECCCCCEEEEE--eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEee--cCCeEEEEeeccccc
Q 038577          100 LFSPNGKYIAVG--TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGS--KDLAVRLFYVKEKLK  175 (860)
Q Consensus       100 ~fspdg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~--~dg~v~vwd~~~~~~  175 (860)
                      ++.+.+..|..+  ..+.|.+.++.+...       ...+...-.....+++.|....|+...  ..+.|...+++..  
T Consensus        86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~-------~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~--  156 (628)
T 4a0p_A           86 AVDWLGKNLYWADTGTNRIEVSKLDGQHR-------QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS--  156 (628)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSTTC-------EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--
T ss_pred             EEEeCCCEEEEEECCCCEEEEEecCCCcE-------EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC--
Confidence            998877777666  568899999887642       111223345578999999666666554  2456777776654  


Q ss_pred             CcccccceEeecCCCcEEEEEEccCCCCCccceEEEEc-CCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEe
Q 038577          176 GIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIA-RDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGL  254 (860)
Q Consensus       176 ~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (860)
                           ....+...-.....+++.+++.     +|+.+. ..+.|...++++...                        .+
T Consensus       157 -----~~~~l~~~~~~P~GlalD~~~~-----~LY~aD~~~~~I~~~d~dG~~~------------------------~v  202 (628)
T 4a0p_A          157 -----ERTTLVPNVGRANGLTIDYAKR-----RLYWTDLDTNLIESSNMLGLNR------------------------EV  202 (628)
T ss_dssp             -----SCEEEECSCSSEEEEEEETTTT-----EEEEEETTTTEEEEEETTSCSC------------------------EE
T ss_pred             -----ceEEEECCCCCcceEEEccccC-----EEEEEECCCCEEEEEcCCCCce------------------------EE
Confidence                 2233334556788999999876     666664 457788888765321                        00


Q ss_pred             eeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEE-EEEEc----cCC
Q 038577          255 LRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWL-VFGCA----KLG  329 (860)
Q Consensus       255 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~----~~g  329 (860)
                           +.........+++.. +..+++-...+.|...|..+++....+.........+........- .-.+.    .-.
T Consensus       203 -----~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~  276 (628)
T 4a0p_A          203 -----IADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCS  276 (628)
T ss_dssp             -----EEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCS
T ss_pred             -----eeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcc
Confidence                 111222345677654 3344444457889999987777666655443334444332211100 00000    001


Q ss_pred             cEEEEEccCceEEEEec-C---cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCee-EEEee-cCCCceEEEEEeeCC
Q 038577          330 QLLVWEWRSESYILKQQ-G---HYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFC-FVTFT-EHTNAVTALHFMANN  403 (860)
Q Consensus       330 ~i~v~d~~~~~~~~~~~-~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~-~~~~~v~~i~~~~~~  403 (860)
                      .+.+-... +.....-. +   .....+|..   ...+++.+.. ..|+-..+..... ...+. ..-..+.+++|.+..
T Consensus       277 ~~C~~~~~-~~~~C~C~~g~~l~~d~~~C~~---~~~~Ll~s~~-~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~  351 (628)
T 4a0p_A          277 HLCLAVPV-GGFVCGCPAHYSLNADNRTCSA---PTTFLLFSQK-SAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLD  351 (628)
T ss_dssp             SEEEEETT-TEEEEECSTTCEECTTSSCEEC---CSSEEEEEET-TEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTT
T ss_pred             hhhhcCCC-CCeeEEcCCCcEecccCCcCcc---ccceeeeecc-ceEEEEecccccCceEEEEehhcCCceEEEEecCC
Confidence            12222110 11111100 0   111122321   2345555443 5676666543321 11221 223567889999866


Q ss_pred             CEEEEE-eCCCcEEEEEccccceeeEeeC-----CCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEe-cCc
Q 038577          404 HSLLSA-SLDGTVRAWDLFRYRNFRTFTT-----PSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDIL-SGH  476 (860)
Q Consensus       404 ~~l~s~-~~dg~i~~wd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~-~~h  476 (860)
                      ..|+.+ ...+.|..+++........+..     .....+..++++..++.|+.+....+.|.+.++. |+....+ ...
T Consensus       352 ~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~  430 (628)
T 4a0p_A          352 KQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGE  430 (628)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECT
T ss_pred             CeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCC
Confidence            565544 4567788887754433333322     1233578999999988887776665599999986 5554443 334


Q ss_pred             ccCeEEEEEcCC-CCEEEEEeCCC--cEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeC-CCeEEEEeCCCCc
Q 038577          477 EGPVHGLVFSPT-NATLASSSWDK--TVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTL-DGQIHFWDPLNGE  552 (860)
Q Consensus       477 ~~~v~~l~~s~~-~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~  552 (860)
                      .....+|++.|. |.++++-....  .|...++............-...+.++++++++.|+.+.. .+.|..++++ |.
T Consensus       431 l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~d-G~  509 (628)
T 4a0p_A          431 QDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLS-GA  509 (628)
T ss_dssp             TCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SC
T ss_pred             CCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCC-CC
Confidence            567899999995 54444432222  5666666544322222233456799999998888877754 5789999985 44


Q ss_pred             eeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEe
Q 038577          553 LMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQ  620 (860)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~  620 (860)
                      ....+....                   .....+++... +....+-...+.|...|..+|+....+.
T Consensus       510 ~r~~~~~~~-------------------~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i~  557 (628)
T 4a0p_A          510 NRIVLEDSN-------------------ILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKVQ  557 (628)
T ss_dssp             SCEEEECSS-------------------CSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEEE
T ss_pred             ceEEEEcCC-------------------CCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEEe
Confidence            344443211                   11356777754 4444555566788888888777655443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.51  E-value=5e-11  Score=120.16  Aligned_cols=236  Identities=12%  Similarity=0.111  Sum_probs=163.0

Q ss_pred             cCeeEEEEcCCCC-EEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCccccee
Q 038577           53 SNICRIAVSPDGT-FLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAF  131 (860)
Q Consensus        53 ~~v~~va~spdg~-~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~  131 (860)
                      .-..+..|+|++. ++++...++.|..||..+++. ..+.....+.+++++|+|+++++ .++.|.+||..+++.     
T Consensus        13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~-~~~~l~~~d~~~g~~-----   85 (297)
T 3g4e_A           13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVAT-IGTKFCALNWKEQSA-----   85 (297)
T ss_dssp             SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEE-ETTEEEEEETTTTEE-----
T ss_pred             ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEE-ECCeEEEEECCCCcE-----
Confidence            3456889999655 455556678999999988765 44556788999999999995555 578899999987652     


Q ss_pred             EEEEEeec--cCCCeEEEEEcCCCCeEEEeecC---------CeEEEEeecccccCcccccceEeecCCCcEEEEEEccC
Q 038577          132 ELIRTLAD--CNDKVTALNWSPDSNYLLVGSKD---------LAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVD  200 (860)
Q Consensus       132 ~~~~~~~~--h~~~v~~l~~s~d~~~l~s~~~d---------g~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~  200 (860)
                      ..+.....  ....+..++++|+|++.++...+         ..-.+|.++..      .....+..+......++|+|+
T Consensus        86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~------g~~~~~~~~~~~pngi~~spd  159 (297)
T 3g4e_A           86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD------HHVKKYFDQVDISNGLDWSLD  159 (297)
T ss_dssp             EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT------SCEEEEEEEESBEEEEEECTT
T ss_pred             EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC------CCEEEEeeccccccceEEcCC
Confidence            11121111  12347889999999976654322         33466666543      122233344456789999999


Q ss_pred             CCCCccceEE-EEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEE
Q 038577          201 KKTDKVNRIY-TIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMV  279 (860)
Q Consensus       201 ~~~~~~~~l~-s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  279 (860)
                      ++     .++ +.+.++.|..|+++.....                   +..-  .....+.........++++++|++.
T Consensus       160 g~-----~lyv~~~~~~~i~~~~~d~~~G~-------------------~~~~--~~~~~~~~~~~~p~g~~~d~~G~lw  213 (297)
T 3g4e_A          160 HK-----IFYYIDSLSYSVDAFDYDLQTGQ-------------------ISNR--RSVYKLEKEEQIPDGMCIDAEGKLW  213 (297)
T ss_dssp             SC-----EEEEEEGGGTEEEEEEECTTTCC-------------------EEEE--EEEEECCGGGCEEEEEEEBTTSCEE
T ss_pred             CC-----EEEEecCCCCcEEEEeccCCCCc-------------------ccCc--EEEEECCCCCCCCCeeEECCCCCEE
Confidence            98     665 4556788999988521110                   0000  0011112223467889999999887


Q ss_pred             EEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEe-eCCCEEEEEEcc
Q 038577          280 VVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFN-ELGNWLVFGCAK  327 (860)
Q Consensus       280 ~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~~  327 (860)
                      ++....+.|..|+..+++.+..+..+...+++++|. |+++.|.+++..
T Consensus       214 va~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          214 VACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             EEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred             EEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence            777788899999998899999888887889999999 899988887764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.50  E-value=5.8e-11  Score=119.72  Aligned_cols=230  Identities=11%  Similarity=0.054  Sum_probs=162.2

Q ss_pred             CceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 038577          306 REKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFV  385 (860)
Q Consensus       306 ~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  385 (860)
                      ..-..+..|++++..++.+....+.|..||..++.... + .....+.+++++++|+++++ . ++.|.+||..+++...
T Consensus        12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~   87 (297)
T 3g4e_A           12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-V-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVV   87 (297)
T ss_dssp             CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-E-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEE
T ss_pred             CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-E-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEE
Confidence            34556889999888888887777999999998876532 2 23467899999999995554 4 5689999998876543


Q ss_pred             Eeec----CCCceEEEEEeeCCCEEEEEeCC---------CcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEE
Q 038577          386 TFTE----HTNAVTALHFMANNHSLLSASLD---------GTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAG  452 (860)
Q Consensus       386 ~~~~----~~~~v~~i~~~~~~~~l~s~~~d---------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  452 (860)
                      ....    ....+.+++++|+|+.+++...+         ..-.+|.+........+. ........++++|+++.++++
T Consensus        88 ~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-~~~~~pngi~~spdg~~lyv~  166 (297)
T 3g4e_A           88 LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF-DQVDISNGLDWSLDHKIFYYI  166 (297)
T ss_dssp             EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE-EEESBEEEEEECTTSCEEEEE
T ss_pred             EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe-eccccccceEEcCCCCEEEEe
Confidence            3322    12357899999999866654321         234555554322222221 112245789999999988776


Q ss_pred             ecCCCeEEEEEC--CCCceE-----EEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEE
Q 038577          453 TLDSFEIFVWSM--KTGRLL-----DILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTV  525 (860)
Q Consensus       453 ~~~~~~i~v~d~--~~~~~~-----~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  525 (860)
                      ....+.|.+|++  .++...     ..+..+.+.+..++++++|++.++...++.|..||..+++....+..+...++++
T Consensus       167 ~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~  246 (297)
T 3g4e_A          167 DSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSC  246 (297)
T ss_dssp             EGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEE
T ss_pred             cCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEE
Confidence            665449999987  455432     2333345678899999999988888778889999998888666666666789999


Q ss_pred             EEe-eCCCEEEEEeCC
Q 038577          526 VYR-PDGRQLACSTLD  540 (860)
Q Consensus       526 ~~s-~~~~~l~~~~~d  540 (860)
                      +|. |+++.|++++..
T Consensus       247 ~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          247 CFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             EEESGGGCEEEEEEBC
T ss_pred             EEeCCCCCEEEEEcCC
Confidence            999 898888776643

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.49  E-value=3.7e-11  Score=126.36  Aligned_cols=250  Identities=17%  Similarity=0.099  Sum_probs=170.2

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCC--cEEEEEccccceee
Q 038577          350 FDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDG--TVRAWDLFRYRNFR  427 (860)
Q Consensus       350 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg--~i~~wd~~~~~~~~  427 (860)
                      .....++++++++++++...++.|++||..++........ ..... ++|+++++.|+++..++  .|.+|+........
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            4578999999999777777789999999988877655544 33334 99999999999888866  78888887655433


Q ss_pred             Ee---eCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEE----ecCcccCe--EEEEEcCC-CCEEEEEeC
Q 038577          428 TF---TTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDI----LSGHEGPV--HGLVFSPT-NATLASSSW  497 (860)
Q Consensus       428 ~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~----~~~h~~~v--~~l~~s~~-~~~l~s~~~  497 (860)
                      .+   .......+.+++++|++..|+++..++ .|+.||..++.....    ..++...-  ..++|+|+ +.++++-..
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~-~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~  287 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNK-NFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN  287 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTC-EEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCC-cEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence            33   121334567899999666666666655 999999987764332    22222222  39999995 555566666


Q ss_pred             CCcEEEEEccCCcceeEEccc---------------CCCeEEEEEeeCCCEEEEEe-CCCeEEEEeCCCCceeEEEeccc
Q 038577          498 DKTVRLWNVFEGKGSVESFPH---------------THDVLTVVYRPDGRQLACST-LDGQIHFWDPLNGELMYTIEGRR  561 (860)
Q Consensus       498 dg~i~iwd~~~~~~~~~~~~~---------------~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~  561 (860)
                      .+.|+.|+....  .....++               -.....++++|+|+++++-. .++.|+.|++.++.. ..+.++.
T Consensus       288 ~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~  364 (409)
T 3hrp_A          288 LSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQV  364 (409)
T ss_dssp             TTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECT
T ss_pred             CCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCC
Confidence            788999987543  2222222               24578999999999777766 788999999888764 4444432


Q ss_pred             ccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEEC
Q 038577          562 DISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV  610 (860)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~  610 (860)
                      ...+....     ......-.....++++++|.++++-..++.|+.+++
T Consensus       365 ~~~g~~~g-----~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          365 DVASQIDG-----TPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TCBSCCCB-----STTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCCcCCC-----ChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            11100000     000111235799999999988888888888888775

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.49  E-value=7.9e-12  Score=140.39  Aligned_cols=280  Identities=12%  Similarity=0.123  Sum_probs=197.9

Q ss_pred             CCEEEEEEcCCeEEEEECCCceeEEEEeecCce-----------eEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEE
Q 038577          276 LDMVVVGFSNGVFGLYQMPDFVCIHLLSISREK-----------ITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILK  344 (860)
Q Consensus       276 ~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~-----------i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~  344 (860)
                      +..+++++.++.|.-+|..+++.+..+......           ...+++  ++..+++++.+ +.|..+|..+++.+.+
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~d-g~l~alD~~tG~~~W~  153 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWD-GRLIALDAATGKEVWH  153 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTT-SEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCC-CEEEEEECCCCCEEee
Confidence            567888888999999999999999877654321           112222  45666666554 9999999999999988


Q ss_pred             ecCc-c----cCeEE-EEEcCCCCEEEEEeC------CCcEEEEECCCCeeEEEeecCCCc-------------------
Q 038577          345 QQGH-Y----FDVNC-LAYSPDSQLLATGAD------DNKVKVWTVSSGFCFVTFTEHTNA-------------------  393 (860)
Q Consensus       345 ~~~~-~----~~v~~-~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~-------------------  393 (860)
                      +..+ .    ..+.+ ..+  .+..+++++.      +|.|+.||..+|+.+..+......                   
T Consensus       154 ~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~  231 (677)
T 1kb0_A          154 QNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP  231 (677)
T ss_dssp             EETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred             ecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence            7654 1    11111 111  2345555553      689999999999998877543211                   


Q ss_pred             -------------eEEEEEeeCCCEEEEEeCCC-------------------cEEEEEccccceeeEeeCCCC-------
Q 038577          394 -------------VTALHFMANNHSLLSASLDG-------------------TVRAWDLFRYRNFRTFTTPSS-------  434 (860)
Q Consensus       394 -------------v~~i~~~~~~~~l~s~~~dg-------------------~i~~wd~~~~~~~~~~~~~~~-------  434 (860)
                                   ...+++++++..++.+..++                   .|..+|..+++....+.....       
T Consensus       232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~  311 (677)
T 1kb0_A          232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS  311 (677)
T ss_dssp             GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred             cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence                         12567888888888877664                   499999999998888765322       


Q ss_pred             -CcEEEEEECCCC---CEEEEEecCCCeEEEEECCCCceEEEecCcc-----------cCe-------------------
Q 038577          435 -RQFVSLASDQSG---EVICAGTLDSFEIFVWSMKTGRLLDILSGHE-----------GPV-------------------  480 (860)
Q Consensus       435 -~~~~~~~~~~~~---~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~-----------~~v-------------------  480 (860)
                       .....+....+|   ..++.++.++ .++++|..+|+++..+....           .++                   
T Consensus       312 ~~~p~l~~~~~dG~~~~~l~~~~~~G-~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~  390 (677)
T 1kb0_A          312 TQPMILADIKIAGKPRKVILHAPKNG-FFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPY  390 (677)
T ss_dssp             CSCCEEEEEEETTEEEEEEEECCTTS-EEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTT
T ss_pred             CCCcEEEecccCCcEeeEEEEECCCC-EEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcc
Confidence             122233334467   6777787777 99999999999987664221           011                   


Q ss_pred             -----EEEEEcCCCCEEEEEeC-------------------------------------------CCcEEEEEccCCcce
Q 038577          481 -----HGLVFSPTNATLASSSW-------------------------------------------DKTVRLWNVFEGKGS  512 (860)
Q Consensus       481 -----~~l~~s~~~~~l~s~~~-------------------------------------------dg~i~iwd~~~~~~~  512 (860)
                           ..++++|++.++++...                                           .|.|..||+.+++..
T Consensus       391 G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~  470 (677)
T 1kb0_A          391 GAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA  470 (677)
T ss_dssp             CSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE
T ss_pred             cccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEE
Confidence                 15688998888877543                                           277999999999855


Q ss_pred             eEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccc
Q 038577          513 VESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRD  562 (860)
Q Consensus       513 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  562 (860)
                      .... +..++....++.++..+++++.||.+++||..+|+.+..+.....
T Consensus       471 W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~  519 (677)
T 1kb0_A          471 WSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG  519 (677)
T ss_dssp             EEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             eecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCC
Confidence            5443 444455666778888999999999999999999999999986553

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.48  E-value=5.7e-11  Score=124.71  Aligned_cols=302  Identities=10%  Similarity=0.053  Sum_probs=199.9

Q ss_pred             CCCEEEEEEcCCeEEEEECCCceeEEEEeecC--------ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEec
Q 038577          275 GLDMVVVGFSNGVFGLYQMPDFVCIHLLSISR--------EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQ  346 (860)
Q Consensus       275 ~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~--------~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~  346 (860)
                      .+..+++++.++.+..+|..+++.+.......        ..........++..+++++.+ +.|..+|..+++.+....
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~-g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEK-AQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETT-SEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCC-CEEEEEECCCCCEEEEEe
Confidence            46788889999999999999999887666532        111222233345666666655 999999999999887765


Q ss_pred             CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCce-----EEEEEeeCCCEEEEEeCCCcEEEEEcc
Q 038577          347 GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAV-----TALHFMANNHSLLSASLDGTVRAWDLF  421 (860)
Q Consensus       347 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~i~~~~~~~~l~s~~~dg~i~~wd~~  421 (860)
                      ............  +..+++++.++.+..+|..+++.+..........     ......  +..++.++.++.+..+|..
T Consensus       131 ~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~  206 (376)
T 3q7m_A          131 VAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLME  206 (376)
T ss_dssp             CSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETT
T ss_pred             CCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECC
Confidence            433222222222  4478888899999999999999887765432211     122222  3467888889999999999


Q ss_pred             ccceeeEeeCCCCCcE---E---EEEECC--CCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEE
Q 038577          422 RYRNFRTFTTPSSRQF---V---SLASDQ--SGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLA  493 (860)
Q Consensus       422 ~~~~~~~~~~~~~~~~---~---~~~~~~--~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~  493 (860)
                      +++.............   .   .+...|  .+..+++++.++ .+..+|..+|+.+.....  .....+..  ++..++
T Consensus       207 tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g-~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~  281 (376)
T 3q7m_A          207 QGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNG-NLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIY  281 (376)
T ss_dssp             TCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTS-CEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEE
T ss_pred             CCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCc-EEEEEECCCCcEEeeccC--CCCCCceE--ECCEEE
Confidence            9988777664422100   0   000111  246677777776 899999999998876652  23444444  466788


Q ss_pred             EEeCCCcEEEEEccCCcceeEEcc-cCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCcccccc
Q 038577          494 SSSWDKTVRLWNVFEGKGSVESFP-HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDR  572 (860)
Q Consensus       494 s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  572 (860)
                      .++.++.+..+|..+++....... ..........  .+..|++++.+|.++++|..+|+.+.........         
T Consensus       282 ~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~---------  350 (376)
T 3q7m_A          282 LVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSG---------  350 (376)
T ss_dssp             EEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTC---------
T ss_pred             EEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCc---------
Confidence            888899999999999986655442 2222233333  3567888999999999999999998877652210         


Q ss_pred             ccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEE
Q 038577          573 RSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYD  609 (860)
Q Consensus       573 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd  609 (860)
                                .......  .+..|+.++.+|.|..|+
T Consensus       351 ----------~~~~~~~--~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          351 ----------FQTEPVA--ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             ----------BCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred             ----------ceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence                      0111111  255778888999999886

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.47  E-value=5.7e-11  Score=124.96  Aligned_cols=236  Identities=8%  Similarity=0.011  Sum_probs=166.7

Q ss_pred             ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeeE
Q 038577          307 EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDN--KVKVWTVSSGFCF  384 (860)
Q Consensus       307 ~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~  384 (860)
                      .....++++++|+ |+++...++.|++||..++........... .. ++|+++++.++++..++  .|.+|+...+...
T Consensus       131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~  207 (409)
T 3hrp_A          131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP  207 (409)
T ss_dssp             CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred             CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence            3678899999988 555555558999999998877655544322 33 99999999998888766  7999998766554


Q ss_pred             EEe----ecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeE----eeCCCCCcEE-EEEECCCCCEEEEEecC
Q 038577          385 VTF----TEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRT----FTTPSSRQFV-SLASDQSGEVICAGTLD  455 (860)
Q Consensus       385 ~~~----~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~l~~~~~~  455 (860)
                      ..+    ......+.+++++|++..|+.+..++.|..||..++.....    .......... .++++|++..|+++...
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~  287 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN  287 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence            443    22456788999999555566677788999999977653222    1111111112 89999976666666665


Q ss_pred             CCeEEEEECCCCceEEEecCcc---------------cCeEEEEEcCCCCEEEEEe-CCCcEEEEEccCCcceeEEccc-
Q 038577          456 SFEIFVWSMKTGRLLDILSGHE---------------GPVHGLVFSPTNATLASSS-WDKTVRLWNVFEGKGSVESFPH-  518 (860)
Q Consensus       456 ~~~i~v~d~~~~~~~~~~~~h~---------------~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-  518 (860)
                      .+.|+.|+....  ...+.++.               .....++++|+|+++++-+ .++.|+.|++.++. +..+.++ 
T Consensus       288 ~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~-v~~~~g~~  364 (409)
T 3hrp_A          288 LSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY-VSTVAGQV  364 (409)
T ss_dssp             TTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE-EEEEEECT
T ss_pred             CCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE-EEEEeCCC
Confidence            559999997643  33333332               3478999999999777777 78999999987765 3333332 


Q ss_pred             --------------CCCeEEEEEeeCCCEEEEEeCCCeEEEEeC
Q 038577          519 --------------THDVLTVVYRPDGRQLACSTLDGQIHFWDP  548 (860)
Q Consensus       519 --------------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  548 (860)
                                    -.....++++|+|.++++-..++.|+.+++
T Consensus       365 ~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          365 DVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence                          245889999999887777777888888765

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.46  E-value=4.3e-12  Score=129.33  Aligned_cols=259  Identities=10%  Similarity=-0.046  Sum_probs=179.1

Q ss_pred             eEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEc---------cCCcEEEEEccCceEEEEecCc-------cc
Q 038577          287 VFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCA---------KLGQLLVWEWRSESYILKQQGH-------YF  350 (860)
Q Consensus       287 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---------~~g~i~v~d~~~~~~~~~~~~~-------~~  350 (860)
                      .|.++|..+++.+..+.....+  .+.++|||+.++++..         .++.|.+||..+++.+.++...       ..
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            8899999999999999988776  7999999999999873         3588999999999998887533       12


Q ss_pred             CeEEEEEcCCCCEEEEEeC--CCcEEE--EECCCCeeEEEeecCCCceEEEEEeeCC-CEEEEEeCCCcEEEEEccc---
Q 038577          351 DVNCLAYSPDSQLLATGAD--DNKVKV--WTVSSGFCFVTFTEHTNAVTALHFMANN-HSLLSASLDGTVRAWDLFR---  422 (860)
Q Consensus       351 ~v~~~~~s~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~~~---  422 (860)
                      ....++++|||++++++..  +..+.+  +|..+   +..+... +.   ..+.|++ +.+++.+.||.+.+.++.+   
T Consensus       125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~  197 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAAAPA  197 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred             CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence            3567999999999998864  457888  88876   3444321 11   1233444 3556667788888888876   


Q ss_pred             --cceee----EeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCc--eEEEecC-------c---ccCeEEEE
Q 038577          423 --YRNFR----TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGR--LLDILSG-------H---EGPVHGLV  484 (860)
Q Consensus       423 --~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~--~~~~~~~-------h---~~~v~~l~  484 (860)
                        ++...    .+... ..+.   . ++++..++..+. + .+.+.|..++.  .+..+.-       +   ......++
T Consensus       198 ~~~~v~~~~t~~i~vg-~~P~---~-~~~~~~~~~vs~-~-~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~  270 (368)
T 1mda_H          198 AAGIVGAQCTGAQNCS-SQAA---Q-ANYPGMLVWAVA-S-SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVA  270 (368)
T ss_dssp             CCEECCCCSCTTSCBC-SCCE---E-ETTTTEEEECBS-S-CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEE
T ss_pred             cCCeEEEEeeeeeeCC-CCcc---c-cccCCEEEEEcC-C-EEEEEECCCCcceEEEEEEeccccccccccccCcceeeE
Confidence              33221    11111 1122   3 566666655555 5 89999987543  2222211       0   11122278


Q ss_pred             EcCCCCEEEEEeC---------CCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCE-EEEEe-CCCeEEEEeCCCCce
Q 038577          485 FSPTNATLASSSW---------DKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQ-LACST-LDGQIHFWDPLNGEL  553 (860)
Q Consensus       485 ~s~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~-~dg~i~iwd~~~~~~  553 (860)
                      ++|+++.++.+..         ++.+.++|+.+.+.+..+. .......++|+|||++ +++.. .++.|.++|+.+++.
T Consensus       271 ~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~-vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv  349 (368)
T 1mda_H          271 KLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD  349 (368)
T ss_dssp             EETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred             EcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE-CCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence            9999998876543         2356699999988554443 3336889999999985 55555 589999999999999


Q ss_pred             eEEEecccc
Q 038577          554 MYTIEGRRD  562 (860)
Q Consensus       554 ~~~~~~~~~  562 (860)
                      +.++.....
T Consensus       350 v~~I~vg~~  358 (368)
T 1mda_H          350 QSSVELDKG  358 (368)
T ss_dssp             EEECCCCSC
T ss_pred             EEEEECCCC
Confidence            999876543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.46  E-value=1.4e-07  Score=103.98  Aligned_cols=476  Identities=8%  Similarity=-0.003  Sum_probs=268.4

Q ss_pred             EEEeeeCCeEEEEECCCCc-EEeeccCCccCeeEEEEcCCCCEEEEEcC-CCcEEEEEcccCeE-EEEee-cCCceeEEE
Q 038577           25 KLISPVGNRVSVTDLIKSK-TVTLPVESSSNICRIAVSPDGTFLLTVDE-NQRCHFINLHCHVV-LHRVR-FKYPVNAIL  100 (860)
Q Consensus        25 ~l~~~~~~~i~v~d~~~~~-~~~~~~~h~~~v~~va~spdg~~la~~~~-d~~i~vwd~~~~~~-~~~~~-~~~~v~~~~  100 (860)
                      +|..+..+.|+..|+.... ....+......+..++|++.+..|..+.. .+.|..+++..... ...+. .-.....++
T Consensus        11 ~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlA   90 (619)
T 3s94_A           11 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA   90 (619)
T ss_dssp             CEEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEE
T ss_pred             eEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEE
Confidence            5677788899999998764 33333345567899999997777776654 57888888876532 12222 225688999


Q ss_pred             ECCCCCEEEEE--eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeec--CCeEEEEeecccccC
Q 038577          101 FSPNGKYIAVG--TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSK--DLAVRLFYVKEKLKG  176 (860)
Q Consensus       101 fspdg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~--dg~v~vwd~~~~~~~  176 (860)
                      +.+.+..|..+  ..+.|.+.++.+...       .......-.....|++.|.+.+|+.+..  .+.|...+++..   
T Consensus        91 vD~~~~~ly~~d~~~~~I~v~~~dG~~~-------~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~---  160 (619)
T 3s94_A           91 CDWLGEKLYWTDSETNRIEVSNLDGSLR-------KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS---  160 (619)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSC-------EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC---
T ss_pred             EEecCCEEEEEeCCCCEEEEEECCCCCE-------EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC---
Confidence            99977777776  568999999987642       1122234455788999997666665543  355666665543   


Q ss_pred             cccccceEeecCCCcEEEEEEccCCCCCccceEEEEc-CCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEee
Q 038577          177 IHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIA-RDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLL  255 (860)
Q Consensus       177 ~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (860)
                         .........-.....+++.+++.     .|+.+. ..+.|...++++.....                       + 
T Consensus       161 ---~~~~l~~~~~~~P~Glald~~~~-----~LY~aD~~~~~I~~~~~dG~~~~~-----------------------~-  208 (619)
T 3s94_A          161 ---SRFIIINSEIYWPNGLTLDYEEQ-----KLYWADAKLNFIHKSNLDGTNRQA-----------------------V-  208 (619)
T ss_dssp             ---SCEEEECSSCSSEEEEEEETTTT-----EEEEEETTTCCEEEESSSCCEEC--------------------------
T ss_pred             ---ceEEEEeCCCCCCcEEEEEccCC-----EEEEEeCCCCeEEEecCCCCccEE-----------------------E-
Confidence               12222333456788999998776     666554 45678888776532100                       0 


Q ss_pred             eeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCc-------------------------eeE
Q 038577          256 RKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISRE-------------------------KIT  310 (860)
Q Consensus       256 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~-------------------------~i~  310 (860)
                          ..........+++..+ ...++-..++.|...|..+++....+.....                         ...
T Consensus       209 ----~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs  283 (619)
T 3s94_A          209 ----VKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCS  283 (619)
T ss_dssp             -----------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCS
T ss_pred             ----EeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCccc
Confidence                0000111234444433 2333333456676666655443322211100                         011


Q ss_pred             EEEE-----------eeCC---------------CEEEEEEccCCcEEEEEccCceEE-EEec-CcccCeEEEEEcCCCC
Q 038577          311 TAVF-----------NELG---------------NWLVFGCAKLGQLLVWEWRSESYI-LKQQ-GHYFDVNCLAYSPDSQ  362 (860)
Q Consensus       311 ~~~~-----------s~~~---------------~~l~~~~~~~g~i~v~d~~~~~~~-~~~~-~~~~~v~~~~~s~~~~  362 (860)
                      .+++           .|.|               .+|+++. . +.|+..++...... ..+. ..-..+.+++|.+.+.
T Consensus       284 ~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~-~-~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~  361 (619)
T 3s94_A          284 HLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLAR-R-TDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEG  361 (619)
T ss_dssp             SEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEE-S-SCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTT
T ss_pred             ceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEc-c-cceEEEecCCCccceeEEeccccCccEEEEEEcCCC
Confidence            1111           1111               1233332 2 55666666544221 1111 1224577899998655


Q ss_pred             EEEEEe-CCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCC-CEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEE
Q 038577          363 LLATGA-DDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANN-HSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSL  440 (860)
Q Consensus       363 ~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  440 (860)
                      .|..+. ..+.|+.+++........+...-..+.++++...+ +.+++-+..+.|.+.++... ..+.+....-.....+
T Consensus       362 ~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~-~~~~l~~~~l~~P~~i  440 (619)
T 3s94_A          362 YIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT-MRKILISEDLEEPRAI  440 (619)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECTTCCSEEEE
T ss_pred             eEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC-eEEEEEECCCCCeeeE
Confidence            555544 57789999887544433343334567789998744 45555556778999988644 3344444444577999


Q ss_pred             EECCCCCEEEEEecC-CCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEEccCCcceeEEccc
Q 038577          441 ASDQSGEVICAGTLD-SFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSW-DKTVRLWNVFEGKGSVESFPH  518 (860)
Q Consensus       441 ~~~~~~~~l~~~~~~-~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~  518 (860)
                      +++|....|+.+... ...|...++............-...+.|++++++..|..+.. .+.|..+++............
T Consensus       441 avdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~  520 (619)
T 3s94_A          441 VLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDK  520 (619)
T ss_dssp             EEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECC
T ss_pred             EEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccC
Confidence            999986666665542 247888887644333333444567889999997777776654 467888888655432222222


Q ss_pred             CCCeEEEEEeeCCCEEEEEe-CCCeEEEEeCCCCc
Q 038577          519 THDVLTVVYRPDGRQLACST-LDGQIHFWDPLNGE  552 (860)
Q Consensus       519 ~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~  552 (860)
                      ......++...+  +|+.+. ..+.|...|..++.
T Consensus       521 l~~P~glav~~~--~ly~tD~~~~~I~~~~k~~g~  553 (619)
T 3s94_A          521 IPHIFGFTLLGD--YVYWTDWQRRSIERVHKRSAE  553 (619)
T ss_dssp             CCSSCCEEEETT--EEEEECTTSSCEEEEESSSCC
T ss_pred             CCCcEEEEEECC--EEEEeecCCCeEEEEEcCCCc
Confidence            222334555422  455543 34557777777763

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.45  E-value=2e-11  Score=137.34  Aligned_cols=283  Identities=11%  Similarity=0.079  Sum_probs=192.5

Q ss_pred             CCEEEEEEcCCeEEEEECCCceeEEEEeecCce---------eEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEec
Q 038577          276 LDMVVVGFSNGVFGLYQMPDFVCIHLLSISREK---------ITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQ  346 (860)
Q Consensus       276 ~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~---------i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~  346 (860)
                      +..+++++.++.|..+|..+++.+..+......         ...-....++..+++++.+ +.|..+|.++++.+....
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~d-g~l~AlDa~TG~~~W~~~  148 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLD-GRLEAIDAKTGQRAWSVD  148 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTT-SEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccC-CEEEEEECCCCCEeeeec
Confidence            667888888999999999999998877654321         0001112245666666554 999999999999988775


Q ss_pred             Cc--ccCeEEEEEcC---CCCEEEEEe------CCCcEEEEECCCCeeEEEeecCC------------------------
Q 038577          347 GH--YFDVNCLAYSP---DSQLLATGA------DDNKVKVWTVSSGFCFVTFTEHT------------------------  391 (860)
Q Consensus       347 ~~--~~~v~~~~~s~---~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~------------------------  391 (860)
                      ..  ......+..+|   ++ .++++.      .+|.|+.||..+|+.+..+....                        
T Consensus       149 ~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w  227 (689)
T 1yiq_A          149 TRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY  227 (689)
T ss_dssp             CCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred             CcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence            42  11111111122   44 455543      36899999999999987765210                        


Q ss_pred             -------CceEEEEEeeCCCEEEEEeCCCc-------------------EEEEEccccceeeEeeCCCC--------CcE
Q 038577          392 -------NAVTALHFMANNHSLLSASLDGT-------------------VRAWDLFRYRNFRTFTTPSS--------RQF  437 (860)
Q Consensus       392 -------~~v~~i~~~~~~~~l~s~~~dg~-------------------i~~wd~~~~~~~~~~~~~~~--------~~~  437 (860)
                             .....++++|+...++.+..++.                   |..+|..+++....+.....        ...
T Consensus       228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~  307 (689)
T 1yiq_A          228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHM  307 (689)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred             eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCc
Confidence                   01125778888888888887763                   99999999999888765321        122


Q ss_pred             EEEEECCCCC---EEEEEecCCCeEEEEECCCCceEEEecCcc-c-----------------------------------
Q 038577          438 VSLASDQSGE---VICAGTLDSFEIFVWSMKTGRLLDILSGHE-G-----------------------------------  478 (860)
Q Consensus       438 ~~~~~~~~~~---~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~-~-----------------------------------  478 (860)
                      .......+|+   .++.++.++ .++++|..+|+++....-.. .                                   
T Consensus       308 ~l~d~~~~G~~~~~v~~~~~~G-~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~  386 (689)
T 1yiq_A          308 ILAELPIDGKPRKVLMQAPKNG-FFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFW  386 (689)
T ss_dssp             EEEEEEETTEEEEEEEECCTTS-EEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTT
T ss_pred             EEEeeccCCcEEEEEEEECCCC-eEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcc
Confidence            2222223554   677777777 99999999999874432110 0                                   


Q ss_pred             ---CeEEEEEcCCCCEEEEEeC---------------------------------------------CCcEEEEEccCCc
Q 038577          479 ---PVHGLVFSPTNATLASSSW---------------------------------------------DKTVRLWNVFEGK  510 (860)
Q Consensus       479 ---~v~~l~~s~~~~~l~s~~~---------------------------------------------dg~i~iwd~~~~~  510 (860)
                         .-..++++|+..++++...                                             +|.|..||+.+++
T Consensus       387 Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~  466 (689)
T 1yiq_A          387 GAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ  466 (689)
T ss_dssp             CSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE
T ss_pred             cccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC
Confidence               0112688998887776532                                             3779999999998


Q ss_pred             ceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccc
Q 038577          511 GSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRD  562 (860)
Q Consensus       511 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  562 (860)
                      .......+ .+...-.++..+.++++++.||.++.||.++|+.+..++....
T Consensus       467 ~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~  517 (689)
T 1yiq_A          467 AAWEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASG  517 (689)
T ss_dssp             EEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             eEeEccCC-CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCC
Confidence            66554433 3344446777888999999999999999999999999887654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.44  E-value=2.4e-11  Score=123.20  Aligned_cols=227  Identities=12%  Similarity=0.070  Sum_probs=159.3

Q ss_pred             CcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q 038577          347 GHYFDVNCLAYSPDSQ-LLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRN  425 (860)
Q Consensus       347 ~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~  425 (860)
                      ..........|+|+|+ ++++...++.|..|+. ++. ...+..+...+..++++++|+.+++...++.|..|+.. ++.
T Consensus        42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~  118 (305)
T 3dr2_A           42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQA  118 (305)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCE
Confidence            3445577899999998 5666777889999997 444 34555667789999999999866665566789999975 443


Q ss_pred             eeEeeCC----CCCcEEEEEECCCCCEEEE----Eec------------CCCeEEEEECCCCceEEEecCcccCeEEEEE
Q 038577          426 FRTFTTP----SSRQFVSLASDQSGEVICA----GTL------------DSFEIFVWSMKTGRLLDILSGHEGPVHGLVF  485 (860)
Q Consensus       426 ~~~~~~~----~~~~~~~~~~~~~~~~l~~----~~~------------~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~  485 (860)
                       ..+...    ....+..++++++|+++++    +..            ..+.|+.||..+++.....  .......++|
T Consensus       119 -~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~  195 (305)
T 3dr2_A          119 -HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAF  195 (305)
T ss_dssp             -EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEE
T ss_pred             -EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEE
Confidence             222211    1123567899999998875    321            1237889998777765544  4456788999


Q ss_pred             cCCCCEEEEEeCC------CcEEEEEccCCccee---EE-cccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeE
Q 038577          486 SPTNATLASSSWD------KTVRLWNVFEGKGSV---ES-FPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMY  555 (860)
Q Consensus       486 s~~~~~l~s~~~d------g~i~iwd~~~~~~~~---~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  555 (860)
                      +||++.|+.+...      +.|.+|++.... +.   .+ .........++++++|++. +++.+ .|.+|+. +++.+.
T Consensus       196 spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~~-gv~~~~~-~g~~~~  271 (305)
T 3dr2_A          196 SPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLW-SSSGT-GVCVFDS-DGQLLG  271 (305)
T ss_dssp             CTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEE-ECCSS-EEEEECT-TSCEEE
T ss_pred             cCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEE-EecCC-cEEEECC-CCCEEE
Confidence            9999988877665      689999987653 21   11 1123445678999999944 44444 4999998 577777


Q ss_pred             EEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCe
Q 038577          556 TIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKY  604 (860)
Q Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~  604 (860)
                      .+..+..                     +.+++|+++++.|..++.++.
T Consensus       272 ~~~~~~~---------------------~~~~~f~~d~~~L~it~~~~l  299 (305)
T 3dr2_A          272 HIPTPGT---------------------ASNCTFDQAQQRLFITGGPCL  299 (305)
T ss_dssp             EEECSSC---------------------CCEEEECTTSCEEEEEETTEE
T ss_pred             EEECCCc---------------------eeEEEEeCCCCEEEEEcCCeE
Confidence            7765432                     688999999998888777653

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.43  E-value=2.8e-11  Score=136.20  Aligned_cols=281  Identities=14%  Similarity=0.125  Sum_probs=193.2

Q ss_pred             CCEEEEEEccCCcEEEEEccCceEEEEecCcccC----------e-EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 038577          318 GNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFD----------V-NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVT  386 (860)
Q Consensus       318 ~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~----------v-~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  386 (860)
                      +..+++++.+ +.|..+|..+++.+.++......          + ..+++  .+..+++++.|+.|..+|..+|+.+..
T Consensus        70 ~g~vyv~~~~-~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~  146 (689)
T 1yiq_A           70 DGVMYTTGPF-SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWS  146 (689)
T ss_dssp             TTEEEEECGG-GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEEcCC-CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeee
Confidence            4555555554 88999999999999887543210          0 11222  356788899999999999999999877


Q ss_pred             eecC--CC---ceEEEEEeeCCCEEEEEe------CCCcEEEEEccccceeeEeeCCC-C--------------------
Q 038577          387 FTEH--TN---AVTALHFMANNHSLLSAS------LDGTVRAWDLFRYRNFRTFTTPS-S--------------------  434 (860)
Q Consensus       387 ~~~~--~~---~v~~i~~~~~~~~l~s~~------~dg~i~~wd~~~~~~~~~~~~~~-~--------------------  434 (860)
                      +...  ..   .+.+.-...++ .++.++      .+|.|..||..+++.+..+.... .                    
T Consensus       147 ~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~  225 (689)
T 1yiq_A          147 VDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD  225 (689)
T ss_dssp             EECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred             ecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence            7542  11   11110011244 444443      36899999999999887765311 0                    


Q ss_pred             ---------CcEEEEEECCCCCEEEEEecCCC------------------eEEEEECCCCceEEEecC--cc-------c
Q 038577          435 ---------RQFVSLASDQSGEVICAGTLDSF------------------EIFVWSMKTGRLLDILSG--HE-------G  478 (860)
Q Consensus       435 ---------~~~~~~~~~~~~~~l~~~~~~~~------------------~i~v~d~~~~~~~~~~~~--h~-------~  478 (860)
                               .....++++|++..++++..++.                  .|..+|.++|+.+..++.  |.       .
T Consensus       226 ~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~  305 (689)
T 1yiq_A          226 AYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQ  305 (689)
T ss_dssp             THHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCS
T ss_pred             eeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCC
Confidence                     01125788999999999887641                  499999999999987764  21       1


Q ss_pred             CeEEEEEcCCCC---EEEEEeCCCcEEEEEccCCcceeEEcccC------------------------------------
Q 038577          479 PVHGLVFSPTNA---TLASSSWDKTVRLWNVFEGKGSVESFPHT------------------------------------  519 (860)
Q Consensus       479 ~v~~l~~s~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------------------------------  519 (860)
                      ++.-.....+|+   .++.++.+|.++++|..+++.+.......                                    
T Consensus       306 ~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~  385 (689)
T 1yiq_A          306 HMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAF  385 (689)
T ss_dssp             CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCT
T ss_pred             CcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCc
Confidence            222222223565   78899999999999999998653221100                                    


Q ss_pred             ---CCeEEEEEeeCCCEEEEEeC---------------------------------------------CCeEEEEeCCCC
Q 038577          520 ---HDVLTVVYRPDGRQLACSTL---------------------------------------------DGQIHFWDPLNG  551 (860)
Q Consensus       520 ---~~v~~~~~s~~~~~l~~~~~---------------------------------------------dg~i~iwd~~~~  551 (860)
                         ..-..++++|+..++++...                                             +|.|+.||+.+|
T Consensus       386 ~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG  465 (689)
T 1yiq_A          386 WGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ  465 (689)
T ss_dssp             TCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT
T ss_pred             ccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC
Confidence               00112789998888887632                                             378999999999


Q ss_pred             ceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeecc
Q 038577          552 ELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITH  623 (860)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~  623 (860)
                      +.+..++.+..                     ...-.++..|..++.++.||.++.||.++|+.+.+++...
T Consensus       466 ~~~W~~~~~~~---------------------~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~  516 (689)
T 1yiq_A          466 QAAWEVPYVTI---------------------FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAAS  516 (689)
T ss_dssp             EEEEEEEESSS---------------------CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             CeEeEccCCCC---------------------ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCC
Confidence            99988876543                     2233566678899999999999999999999999887654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.41  E-value=7.1e-11  Score=134.33  Aligned_cols=240  Identities=12%  Similarity=0.083  Sum_probs=165.1

Q ss_pred             ceeEEEEEeeCCCEEEEEEccCC----cEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCc----------
Q 038577          307 EKITTAVFNELGNWLVFGCAKLG----QLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNK----------  372 (860)
Q Consensus       307 ~~i~~~~~s~~~~~l~~~~~~~g----~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~----------  372 (860)
                      ..+..++|||||++++++....|    .|++||+.+++.+... .+......++|+ ||+.|+.++.+..          
T Consensus       129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~  206 (693)
T 3iuj_A          129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTD  206 (693)
T ss_dssp             CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------CC
T ss_pred             EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccccCC
Confidence            46788899999999998776544    6999999999865431 111113567899 9999998887743          


Q ss_pred             ---EEEEECCCCe----eEEEeec-CCCceEEEEEeeCCCEEEEEeC----CCcEEEEEccccc-eeeEeeCCCCCcEEE
Q 038577          373 ---VKVWTVSSGF----CFVTFTE-HTNAVTALHFMANNHSLLSASL----DGTVRAWDLFRYR-NFRTFTTPSSRQFVS  439 (860)
Q Consensus       373 ---i~iwd~~~~~----~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~----dg~i~~wd~~~~~-~~~~~~~~~~~~~~~  439 (860)
                         |++|++.++.    .+..... |.....++.|+|||++|+....    +..+.++|+.++. ..+.+....... ..
T Consensus       207 ~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~-~~  285 (693)
T 3iuj_A          207 QHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD-VS  285 (693)
T ss_dssp             CCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC-EE
T ss_pred             CcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce-EE
Confidence               9999988764    2333333 4455788999999998865432    2479999987764 344444443322 22


Q ss_pred             EEECCCCCEEEEEecC---CCeEEEEECCCCce--EEEecCcccCeEEEEEcCCCCEEEEEeCCC---cEEEEEccCCcc
Q 038577          440 LASDQSGEVICAGTLD---SFEIFVWSMKTGRL--LDILSGHEGPVHGLVFSPTNATLASSSWDK---TVRLWNVFEGKG  511 (860)
Q Consensus       440 ~~~~~~~~~l~~~~~~---~~~i~v~d~~~~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg---~i~iwd~~~~~~  511 (860)
                      . ++++|..++..+..   .+.|..+|+.++..  ...+..|...+.  .|+++++.|+....++   .|++||+..+. 
T Consensus       286 ~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-  361 (693)
T 3iuj_A          286 L-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-  361 (693)
T ss_dssp             E-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-
T ss_pred             E-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-
Confidence            2 56677766655443   24899999988754  345555666665  8999999887666543   68899987554 


Q ss_pred             eeEE-cccCCCeEEEEEeeCCCEEEEEeCC----CeEEEEeCCCCce
Q 038577          512 SVES-FPHTHDVLTVVYRPDGRQLACSTLD----GQIHFWDPLNGEL  553 (860)
Q Consensus       512 ~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~~  553 (860)
                      ...+ ......+..+.++|++..++....+    +.++.||+.+++.
T Consensus       362 ~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          362 VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            3333 2445567788888888877766544    7899999988764

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.40  E-value=3e-07  Score=101.48  Aligned_cols=471  Identities=8%  Similarity=-0.044  Sum_probs=265.7

Q ss_pred             CCcEEEEEcccCe--EEEEeecCCceeEEEECCCCCEEEEE--eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEE
Q 038577           73 NQRCHFINLHCHV--VLHRVRFKYPVNAILFSPNGKYIAVG--TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALN  148 (860)
Q Consensus        73 d~~i~vwd~~~~~--~~~~~~~~~~v~~~~fspdg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~  148 (860)
                      ...|+..++....  .......-....+++|++.+..|..+  ..+.|..+++.+...      ....+.........++
T Consensus        17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~------~~~v~~~~~~~P~GlA   90 (619)
T 3s94_A           17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES------VQNVVVSGLLSPDGLA   90 (619)
T ss_dssp             SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCSCEEEEE
T ss_pred             cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc------eEEEEeCCCCCcCeEE
Confidence            4678888887543  22223344567899999977777776  568899998876531      0122233335678999


Q ss_pred             EcCCCCeEEEe-ecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcC--CccEEEeeecC
Q 038577          149 WSPDSNYLLVG-SKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR--DCYMFSWGFSG  225 (860)
Q Consensus       149 ~s~d~~~l~s~-~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~--dg~i~~w~~~~  225 (860)
                      +.+.++.|+.+ ...+.|.+.+++..      .........-.....+++.|.+.     +|+....  .+.|...++++
T Consensus        91 vD~~~~~ly~~d~~~~~I~v~~~dG~------~~~~l~~~~l~~P~~Iavdp~~g-----~ly~tD~g~~~~I~r~~~dG  159 (619)
T 3s94_A           91 CDWLGEKLYWTDSETNRIEVSNLDGS------LRKVLFWQELDQPRAIALDPSSG-----FMYWTDWGEVPKIERAGMDG  159 (619)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSC------SCEEEECSSCSCCCCEEEETTTT-----EEEEEECSSSCEEEEEETTS
T ss_pred             EEecCCEEEEEeCCCCEEEEEECCCC------CEEEEEeCCCCCCceEEEecCCC-----eEEEeccCCCCEEEEEECCC
Confidence            99966655554 55688999998765      22223334555677889988755     5665543  34555555544


Q ss_pred             CCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEE-cCCeEEEEECCCceeEEEEee
Q 038577          226 NDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGF-SNGVFGLYQMPDFVCIHLLSI  304 (860)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~g~i~~~~~~~~~~~~~~~~  304 (860)
                      ...                            .............+++++++..|+.+. ..+.|..+++...........
T Consensus       160 ~~~----------------------------~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~  211 (619)
T 3s94_A          160 SSR----------------------------FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG  211 (619)
T ss_dssp             CSC----------------------------EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----
T ss_pred             Cce----------------------------EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeC
Confidence            211                            001111234578899999877776655 457888888864433332221


Q ss_pred             cCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecC-----------cc--------------cCe--EEE--
Q 038577          305 SREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQG-----------HY--------------FDV--NCL--  355 (860)
Q Consensus       305 ~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~-----------~~--------------~~v--~~~--  355 (860)
                      .......+++..  ..+..+...++.|...|..+++....+..           |.              +..  .|+  
T Consensus       212 ~~~~P~gi~~~~--~~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~  289 (619)
T 3s94_A          212 SLPHPFALTLFE--DILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMS  289 (619)
T ss_dssp             ----CCCEEESS--SEEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEEC
T ss_pred             CCCCceEEEEeC--CEEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECC
Confidence            222334556543  47777766668888888766643322110           00              000  111  


Q ss_pred             -------EEcC-------CC--------CEEEEEeCCCcEEEEECCCCeeE-EEee-cCCCceEEEEEeeCCCEEE-EEe
Q 038577          356 -------AYSP-------DS--------QLLATGADDNKVKVWTVSSGFCF-VTFT-EHTNAVTALHFMANNHSLL-SAS  410 (860)
Q Consensus       356 -------~~s~-------~~--------~~l~~~~~dg~i~iwd~~~~~~~-~~~~-~~~~~v~~i~~~~~~~~l~-s~~  410 (860)
                             +..|       |+        .+|+.+. .+.|+..++...... ..+. ..-..+.+++|.+.+..|+ +-.
T Consensus       290 ~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~-~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~  368 (619)
T 3s94_A          290 PVKPFYQCACPTGVKLLENGKTCKDGATELLLLAR-RTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDD  368 (619)
T ss_dssp             SSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEE-SSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEET
T ss_pred             CCCCCceEeCCchheecccCcccCCCCceEEEEEc-ccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeC
Confidence                   1111       11        1333333 346666666544221 1111 1234578899998555555 444


Q ss_pred             CCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCC
Q 038577          411 LDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNA  490 (860)
Q Consensus       411 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~  490 (860)
                      ..+.|..+++...... .+..........+++++.+..|+.+....+.|.+.++........+...-....+|++.|...
T Consensus       369 ~~~~I~r~~~~g~~~~-~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G  447 (619)
T 3s94_A          369 EVRAIRRSFIDGSGSQ-FVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVG  447 (619)
T ss_dssp             TTTEEEEEETTSCSCE-EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTT
T ss_pred             CCCeEEEEEcCCCccE-EEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCC
Confidence            5778888888654332 232222335678999987777777776666999999885543333333456789999999755


Q ss_pred             EEEEEeC--CCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeC-CCeEEEEeCCCCceeEEEecccccCCCc
Q 038577          491 TLASSSW--DKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTL-DGQIHFWDPLNGELMYTIEGRRDISGGR  567 (860)
Q Consensus       491 ~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~  567 (860)
                      .|..+..  .+.|...++............-.....+++++++..|+.+.. .+.|..+++........+....      
T Consensus       448 ~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l------  521 (619)
T 3s94_A          448 YMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKI------  521 (619)
T ss_dssp             EEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCC------
T ss_pred             cEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCC------
Confidence            5555543  356777776554322222234566789999998777777754 4679999985443222222111      


Q ss_pred             cccccccccccCCCCcEEEEEEecCCCEEEEec-CCCeEEEEECCCce
Q 038577          568 LMTDRRSAANSSSGKCFTTLCYSADGSYILAGG-SSKYICMYDVADQV  614 (860)
Q Consensus       568 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~-~dg~v~vwd~~~~~  614 (860)
                                    ....+++...+  +|+... ..+.|...|..+|.
T Consensus       522 --------------~~P~glav~~~--~ly~tD~~~~~I~~~~k~~g~  553 (619)
T 3s94_A          522 --------------PHIFGFTLLGD--YVYWTDWQRRSIERVHKRSAE  553 (619)
T ss_dssp             --------------CSSCCEEEETT--EEEEECTTSSCEEEEESSSCC
T ss_pred             --------------CCcEEEEEECC--EEEEeecCCCeEEEEEcCCCc
Confidence                          01234555433  555444 45678888887773

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.40  E-value=1.6e-10  Score=129.69  Aligned_cols=303  Identities=11%  Similarity=0.072  Sum_probs=208.5

Q ss_pred             eEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCC-----CCceEEEEecCCCCEEEEE
Q 038577          208 RIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQA-----PSKVTACDYHRGLDMVVVG  282 (860)
Q Consensus       208 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~  282 (860)
                      .++.++.++.|..+|..++..                      .|...........     ......+++  ++..++++
T Consensus        79 ~vyv~~~~~~v~AlD~~tG~~----------------------~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~  134 (677)
T 1kb0_A           79 IMYVSASWSVVHAIDTRTGNR----------------------IWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVG  134 (677)
T ss_dssp             EEEEECGGGCEEEEETTTTEE----------------------EEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEE
T ss_pred             EEEEECCCCeEEEEECCCCcE----------------------EEEEcCCCCccccccccccCCCCCceE--ECCEEEEE
Confidence            788888899999999988754                      6766543211100     000011222  46788999


Q ss_pred             EcCCeEEEEECCCceeEEEEeec-C----ceeEEEEEeeCCCEEEEEEcc-----CCcEEEEEccCceEEEEecCcccC-
Q 038577          283 FSNGVFGLYQMPDFVCIHLLSIS-R----EKITTAVFNELGNWLVFGCAK-----LGQLLVWEWRSESYILKQQGHYFD-  351 (860)
Q Consensus       283 ~~~g~i~~~~~~~~~~~~~~~~~-~----~~i~~~~~s~~~~~l~~~~~~-----~g~i~v~d~~~~~~~~~~~~~~~~-  351 (860)
                      +.++.+..+|..+++.+..+... .    ..+...-.. .+..++++...     +|.|+.+|..+++.+.++...... 
T Consensus       135 ~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~  213 (677)
T 1kb0_A          135 AWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDP  213 (677)
T ss_dssp             CTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCT
T ss_pred             cCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCc
Confidence            99999999999999999887765 2    122211111 24455555431     489999999999998877432211 


Q ss_pred             -------------------------------eEEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCC
Q 038577          352 -------------------------------VNCLAYSPDSQLLATGADDN-------------------KVKVWTVSSG  381 (860)
Q Consensus       352 -------------------------------v~~~~~s~~~~~l~~~~~dg-------------------~i~iwd~~~~  381 (860)
                                                     ...++++|++..++.+..++                   .|..+|..+|
T Consensus       214 ~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG  293 (677)
T 1kb0_A          214 SKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTG  293 (677)
T ss_dssp             TSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC
T ss_pred             cccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCC
Confidence                                           13578889999998887664                   4999999999


Q ss_pred             eeEEEeecCC---------CceEEEEEeeCC---CEEEEEeCCCcEEEEEccccceeeEeeCCCCC----------cE--
Q 038577          382 FCFVTFTEHT---------NAVTALHFMANN---HSLLSASLDGTVRAWDLFRYRNFRTFTTPSSR----------QF--  437 (860)
Q Consensus       382 ~~~~~~~~~~---------~~v~~i~~~~~~---~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~----------~~--  437 (860)
                      +.+..+....         ....-+....+|   ..++.++.+|.+.++|..+++.+..+......          .+  
T Consensus       294 ~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~  373 (677)
T 1kb0_A          294 KYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGI  373 (677)
T ss_dssp             CEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEEC
T ss_pred             CEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeec
Confidence            9988775421         223333444467   67899999999999999999987766533211          01  


Q ss_pred             ----------------------EEEEECCCCCEEEEEecC----------------------------------------
Q 038577          438 ----------------------VSLASDQSGEVICAGTLD----------------------------------------  455 (860)
Q Consensus       438 ----------------------~~~~~~~~~~~l~~~~~~----------------------------------------  455 (860)
                                            ..++++|++.++++...+                                        
T Consensus       374 ~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~  453 (677)
T 1kb0_A          374 AAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKS  453 (677)
T ss_dssp             GGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCS
T ss_pred             cccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCC
Confidence                                  146889998888876431                                        


Q ss_pred             --CCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcc-cCCCeEEEEEeeCCC
Q 038577          456 --SFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFP-HTHDVLTVVYRPDGR  532 (860)
Q Consensus       456 --~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~  532 (860)
                        .+.|..||+.+++.+..+. +..++....++.++..++.++.||.+++||..+++.+..+.. +.....-+.|.++|+
T Consensus       454 ~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~  532 (677)
T 1kb0_A          454 KPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGR  532 (677)
T ss_dssp             CCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             CCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCE
Confidence              1489999999999988876 444555566777888899999999999999999997776653 333344566778887


Q ss_pred             EEEE
Q 038577          533 QLAC  536 (860)
Q Consensus       533 ~l~~  536 (860)
                      .+++
T Consensus       533 ~~v~  536 (677)
T 1kb0_A          533 QYVS  536 (677)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5544

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.40  E-value=5.4e-10  Score=114.09  Aligned_cols=222  Identities=14%  Similarity=0.056  Sum_probs=153.2

Q ss_pred             eEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEee
Q 038577          352 VNCLAYSPDSQ-LLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFT  430 (860)
Q Consensus       352 v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~  430 (860)
                      ..+.+|+|++. .+++...++.|..||..+++... +. ....+.+++++++++++++. .+ .|.+||..+++......
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~  126 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAE  126 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEEC
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEee
Confidence            46788999754 55666668899999998776432 32 35679999999999876654 44 59999988776543322


Q ss_pred             CC---CCCcEEEEEECCCCCEEEEEecC-----CCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEE-eCCCcE
Q 038577          431 TP---SSRQFVSLASDQSGEVICAGTLD-----SFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASS-SWDKTV  501 (860)
Q Consensus       431 ~~---~~~~~~~~~~~~~~~~l~~~~~~-----~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i  501 (860)
                      ..   ....+..++++|+|++++....+     .+.|+.++  +++... +..+......++|+|+++.++.+ +.++.|
T Consensus       127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I  203 (326)
T 2ghs_A          127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRL  203 (326)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred             CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEE
Confidence            21   12357889999999977655421     23677777  455433 32344567899999999877655 456889


Q ss_pred             EEEEcc--CC-cc----ee-EEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccc
Q 038577          502 RLWNVF--EG-KG----SV-ESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRR  573 (860)
Q Consensus       502 ~iwd~~--~~-~~----~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  573 (860)
                      .+||+.  ++ ..    .. ...........++++++|++.++...++.|.+||. +++.+..+..+..           
T Consensus       204 ~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~-----------  271 (326)
T 2ghs_A          204 MRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK-----------  271 (326)
T ss_dssp             EEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS-----------
T ss_pred             EEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCC-----------
Confidence            999986  44 31    11 11123455788999999988777777789999998 6777766654432           


Q ss_pred             cccccCCCCcEEEEEEe-cCCCEEEEecC
Q 038577          574 SAANSSSGKCFTTLCYS-ADGSYILAGGS  601 (860)
Q Consensus       574 ~~~~~~~~~~i~~l~~s-~~g~~l~~~~~  601 (860)
                               .+++++|+ ++++.|++++.
T Consensus       272 ---------~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          272 ---------QTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             ---------BEEEEEEESTTSCEEEEEEB
T ss_pred             ---------CcEEEEEecCCCCEEEEEec
Confidence                     48999999 89887765543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.40  E-value=7.1e-10  Score=113.22  Aligned_cols=224  Identities=12%  Similarity=0.041  Sum_probs=154.9

Q ss_pred             eeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 038577          308 KITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTF  387 (860)
Q Consensus       308 ~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  387 (860)
                      -.....|+|++..++.+....+.|..||..+++... +. ....+.+++++++|+++++. . ..|.+||..+++.....
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~  125 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHA  125 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEe
Confidence            346788999888887777766899999998876543 22 34579999999999877654 4 45999999887754332


Q ss_pred             ec----CCCceEEEEEeeCCCEEEEEeC------CCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCC
Q 038577          388 TE----HTNAVTALHFMANNHSLLSASL------DGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSF  457 (860)
Q Consensus       388 ~~----~~~~v~~i~~~~~~~~l~s~~~------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  457 (860)
                      ..    ....+.+++++|+|+.+++...      .+.|..++  +++.. .+.. .......++++|+++.++++....+
T Consensus       126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~-~~~~~~~i~~s~dg~~lyv~~~~~~  201 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFA-DISIPNSICFSPDGTTGYFVDTKVN  201 (326)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEE-EESSEEEEEECTTSCEEEEEETTTC
T ss_pred             eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeC-CCcccCCeEEcCCCCEEEEEECCCC
Confidence            21    1235889999999987665432      23455555  44332 2221 1224578999999998877765545


Q ss_pred             eEEEEECC--CC-ce-----EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEe-
Q 038577          458 EIFVWSMK--TG-RL-----LDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-  528 (860)
Q Consensus       458 ~i~v~d~~--~~-~~-----~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-  528 (860)
                      .|++||+.  ++ +.     ...+......+..++++++|.+.++...++.|.+||. +++....+..+...+++++|+ 
T Consensus       202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g  280 (326)
T 2ghs_A          202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIG  280 (326)
T ss_dssp             EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEES
T ss_pred             EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEec
Confidence            99999986  55 32     2233334456788999999998877777788999998 555445554555679999999 


Q ss_pred             eCCCEEEEEeCC
Q 038577          529 PDGRQLACSTLD  540 (860)
Q Consensus       529 ~~~~~l~~~~~d  540 (860)
                      |+++.|++++..
T Consensus       281 ~d~~~L~vt~~~  292 (326)
T 2ghs_A          281 PDASRLLVTSAR  292 (326)
T ss_dssp             TTSCEEEEEEBC
T ss_pred             CCCCEEEEEecC
Confidence            888877666543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.40  E-value=3.2e-11  Score=137.14  Aligned_cols=243  Identities=13%  Similarity=0.123  Sum_probs=165.2

Q ss_pred             cccCeEEEEEcCCCCEEEEEe-----CCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCc--------
Q 038577          348 HYFDVNCLAYSPDSQLLATGA-----DDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGT--------  414 (860)
Q Consensus       348 ~~~~v~~~~~s~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~--------  414 (860)
                      +...+..++|||||+++|.+.     ....|++||+.+++.+.... +......++|+ |++.|+.++.+..        
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~  204 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR  204 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence            455688899999999988543     23579999999998655321 11113567899 9999998887743        


Q ss_pred             -----EEEEEcccccee--eEeeCCC--CCcEEEEEECCCCCEEEEEecCC---CeEEEEECCCCc-eEEEecCcccCeE
Q 038577          415 -----VRAWDLFRYRNF--RTFTTPS--SRQFVSLASDQSGEVICAGTLDS---FEIFVWSMKTGR-LLDILSGHEGPVH  481 (860)
Q Consensus       415 -----i~~wd~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~---~~i~v~d~~~~~-~~~~~~~h~~~v~  481 (860)
                           |++|++.+....  ..+..+.  ......+.++|||++|++....+   ..++++|+.++. ....+..+.....
T Consensus       205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~  284 (693)
T 3iuj_A          205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV  284 (693)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred             CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence                 999998876542  2222222  23467899999999987755422   389999998764 3455555666655


Q ss_pred             EEEEcCCCCEEEEEeC-C---CcEEEEEccCCcc--eeEEcccCCCeEEEEEeeCCCEEEEEeC-CC--eEEEEeCCCCc
Q 038577          482 GLVFSPTNATLASSSW-D---KTVRLWNVFEGKG--SVESFPHTHDVLTVVYRPDGRQLACSTL-DG--QIHFWDPLNGE  552 (860)
Q Consensus       482 ~l~~s~~~~~l~s~~~-d---g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~iwd~~~~~  552 (860)
                      .. ++++|..|+..+. +   +.|..+|+.++..  ...+..+...+.  .|+++++.|+.... ++  .|++|++..+ 
T Consensus       285 ~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-  360 (693)
T 3iuj_A          285 SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-  360 (693)
T ss_dssp             EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-
T ss_pred             EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-
Confidence            55 6667766655443 3   5799999987653  245556666665  89999998877654 43  6899998754 


Q ss_pred             eeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCC----CeEEEEECCCceE
Q 038577          553 LMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSS----KYICMYDVADQVL  615 (860)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d----g~v~vwd~~~~~~  615 (860)
                      ....+.....                   ..+..+.++++++.|+....+    +.+..||+.+++.
T Consensus       361 ~~~~l~~p~~-------------------~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          361 RVREVALPGL-------------------GSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             EEEEECCSSS-------------------SEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             eeEEeecCCC-------------------ceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            3344332111                   236778888898877655444    8899999988764

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.40  E-value=6.1e-11  Score=122.23  Aligned_cols=236  Identities=13%  Similarity=0.132  Sum_probs=159.9

Q ss_pred             cCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeeEEEee-------cCCCceEEEEEeeCCCEEEEEeC-----CCcE
Q 038577          350 FDVNCLAYSPDSQLLATGAD--DNKVKVWTVSSGFCFVTFT-------EHTNAVTALHFMANNHSLLSASL-----DGTV  415 (860)
Q Consensus       350 ~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~-------~~~~~v~~i~~~~~~~~l~s~~~-----dg~i  415 (860)
                      ..+..++++++|+.+++...  ++.+++|.+.+++. ..+.       .+-..+.+++++++++.+++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            56889999999998888642  34345555545543 3221       24567999999999876555433     5789


Q ss_pred             EEEEccccceeeEeeCCC-----CCcEEEEEECCCCCEEEEEec---CCCeEEEEECCCCceEEEecCcc----------
Q 038577          416 RAWDLFRYRNFRTFTTPS-----SRQFVSLASDQSGEVICAGTL---DSFEIFVWSMKTGRLLDILSGHE----------  477 (860)
Q Consensus       416 ~~wd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~---~~~~i~v~d~~~~~~~~~~~~h~----------  477 (860)
                      .+||+.+++..+.+..+.     ...+..+++++++..++++..   ..+.|.+||+.+++..+.+.+|.          
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~  175 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV  175 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence            999999888777766532     234578999987666666554   33489999999888777664431          


Q ss_pred             -------------------cCeEEEEEcCCCCEEEEEeCCC-cEEEEEcc---CCc----c---eeEEcccCCCeEEEEE
Q 038577          478 -------------------GPVHGLVFSPTNATLASSSWDK-TVRLWNVF---EGK----G---SVESFPHTHDVLTVVY  527 (860)
Q Consensus       478 -------------------~~v~~l~~s~~~~~l~s~~~dg-~i~iwd~~---~~~----~---~~~~~~~~~~v~~~~~  527 (860)
                                         ..+..++|+|+++.|+.+..++ .+..++..   .+.    .   .....++......+++
T Consensus       176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~  255 (343)
T 2qe8_A          176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISI  255 (343)
T ss_dssp             ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE
T ss_pred             ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEE
Confidence                               1358899999999998887766 44444432   110    0   0012233345667999


Q ss_pred             eeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeE
Q 038577          528 RPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYI  605 (860)
Q Consensus       528 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v  605 (860)
                      +++|+++++...++.|.+||..+++.........                   ...+++++|+++|+++++.+..+.+
T Consensus       256 d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~-------------------~~~p~~va~~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          256 DKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEK-------------------LSWTDSFNFGSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             CTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGG-------------------GSCEEEEEECTTSCEEEEECCGGGS
T ss_pred             CCCCCEEEEccCCCeEEEEECCCCCEEEEEECCc-------------------eecCCeeEECCCCcEEEEeCccccc
Confidence            9999999988889999999986676433332211                   1247999999999988877655444

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.39  E-value=5.7e-10  Score=113.44  Aligned_cols=223  Identities=13%  Similarity=0.176  Sum_probs=160.7

Q ss_pred             e--eCCCEEEEEEccCCcEEEEEccCc----eEEEEec-------CcccCeEEEEEcCCCCEEEEEeCC------CcEEE
Q 038577          315 N--ELGNWLVFGCAKLGQLLVWEWRSE----SYILKQQ-------GHYFDVNCLAYSPDSQLLATGADD------NKVKV  375 (860)
Q Consensus       315 s--~~~~~l~~~~~~~g~i~v~d~~~~----~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~d------g~i~i  375 (860)
                      +  ++++++++.+..++.|.++|+.+.    +....+.       ........+..+|+| .++++..+      |.|.+
T Consensus        90 ~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~v  168 (462)
T 2ece_A           90 KPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILM  168 (462)
T ss_dssp             CTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEE
T ss_pred             CCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEE
Confidence            7  889999999999999999999765    5555552       011235567889999 77766555      78999


Q ss_pred             EECCCCeeEEEeecCCCc---eEEEEEeeCCCEEEEEe-------------------CCCcEEEEEccccceeeEeeCCC
Q 038577          376 WTVSSGFCFVTFTEHTNA---VTALHFMANNHSLLSAS-------------------LDGTVRAWDLFRYRNFRTFTTPS  433 (860)
Q Consensus       376 wd~~~~~~~~~~~~~~~~---v~~i~~~~~~~~l~s~~-------------------~dg~i~~wd~~~~~~~~~~~~~~  433 (860)
                      +|..+++.+.++.....+   -..+.|+|+++.+++..                   .+.+|.+||+.+++...++....
T Consensus       169 lD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~  248 (462)
T 2ece_A          169 LDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE  248 (462)
T ss_dssp             ECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT
T ss_pred             EECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC
Confidence            999999999988633222   34588899999888885                   36799999999988888888753


Q ss_pred             -CCcEEEEEE--CCCCCEEEEEec-----CCCeEEEEECCCCceE--EEe--cCc----------------ccCeEEEEE
Q 038577          434 -SRQFVSLAS--DQSGEVICAGTL-----DSFEIFVWSMKTGRLL--DIL--SGH----------------EGPVHGLVF  485 (860)
Q Consensus       434 -~~~~~~~~~--~~~~~~l~~~~~-----~~~~i~v~d~~~~~~~--~~~--~~h----------------~~~v~~l~~  485 (860)
                       ......+.|  +|+++++++++.     ..++|.+|....++..  +.+  ...                ......|.+
T Consensus       249 ~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l  328 (462)
T 2ece_A          249 ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI  328 (462)
T ss_dssp             TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred             CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence             233445555  999999999887     6668887766554321  111  110                234788999


Q ss_pred             cCCCCEEEEEeC-CCcEEEEEccCCc---ceeEEcccC--------------CCeEEEEEeeCCCEEEEEe
Q 038577          486 SPTNATLASSSW-DKTVRLWNVFEGK---GSVESFPHT--------------HDVLTVVYRPDGRQLACST  538 (860)
Q Consensus       486 s~~~~~l~s~~~-dg~i~iwd~~~~~---~~~~~~~~~--------------~~v~~~~~s~~~~~l~~~~  538 (860)
                      ||||++|.++.. .+.|.+||+....   .........              .....++++|||++|+++.
T Consensus       329 S~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          329 SLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            999999887765 6889999986332   122221110              1358899999999999998

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.39  E-value=6.5e-10  Score=116.63  Aligned_cols=301  Identities=13%  Similarity=0.098  Sum_probs=195.9

Q ss_pred             eEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecccc---CCCCceEEEEecCCCCEEEEEEc
Q 038577          208 RIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFS---QAPSKVTACDYHRGLDMVVVGFS  284 (860)
Q Consensus       208 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~  284 (860)
                      .+++++.++.+..+|..++..                      .|.........   .....+.+ ....++..+++++.
T Consensus        55 ~v~~~~~~g~v~a~d~~tG~~----------------------~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~  111 (376)
T 3q7m_A           55 VVYAADRAGLVKALNADDGKE----------------------IWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSE  111 (376)
T ss_dssp             EEEEECTTSEEEEEETTTCCE----------------------EEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEET
T ss_pred             EEEEEcCCCeEEEEEccCCce----------------------eeeecCccccccccccCccccc-CceEeCCEEEEEcC
Confidence            788899899999999987653                      66554321110   00122222 22234668888999


Q ss_pred             CCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCe-----EEEEEcC
Q 038577          285 NGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDV-----NCLAYSP  359 (860)
Q Consensus       285 ~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v-----~~~~~s~  359 (860)
                      ++.+..+|..+++..................  +..+++++. ++.+..+|..+++.+..........     ...... 
T Consensus       112 ~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~-~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-  187 (376)
T 3q7m_A          112 KAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTS-NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-  187 (376)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECT-TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-
T ss_pred             CCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcC-CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-
Confidence            9999999999999887766554322222222  345555554 4899999999999887765432111     112222 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCc----------e-EEEEEeeCCCEEEEEeCCCcEEEEEccccceeeE
Q 038577          360 DSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNA----------V-TALHFMANNHSLLSASLDGTVRAWDLFRYRNFRT  428 (860)
Q Consensus       360 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------v-~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~  428 (860)
                       +..++++..++.+..+|..+++.+.........          + .....  .+..++.++.++.+..+|..+++....
T Consensus       188 -~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~  264 (376)
T 3q7m_A          188 -FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWK  264 (376)
T ss_dssp             -TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEE
T ss_pred             -CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEee
Confidence             446788888999999999999888766532110          1 01111  245788888899999999999988766


Q ss_pred             eeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC-cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 038577          429 FTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG-HEGPVHGLVFSPTNATLASSSWDKTVRLWNVF  507 (860)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~  507 (860)
                      .....   ...+..  ++..+++++.++ .+..+|..+++.+..... ....+.....  .+..|+.++.+|.+..+|..
T Consensus       265 ~~~~~---~~~~~~--~~~~l~~~~~~g-~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~  336 (376)
T 3q7m_A          265 RELGS---VNDFIV--DGNRIYLVDQND-RVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVE  336 (376)
T ss_dssp             ECCCC---EEEEEE--ETTEEEEEETTC-CEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETT
T ss_pred             ccCCC---CCCceE--ECCEEEEEcCCC-eEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECC
Confidence            65432   233333  366777777777 899999999998877652 2222333333  35678888999999999999


Q ss_pred             CCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEe
Q 038577          508 EGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWD  547 (860)
Q Consensus       508 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  547 (860)
                      +++...........+.+.... .+..|++++.+|.|+.|+
T Consensus       337 tG~~~~~~~~~~~~~~~~~~~-~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          337 DGRFVAQQKVDSSGFQTEPVA-ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             TCCEEEEEECCTTCBCSCCEE-ETTEEEEEBTTSCEEEEE
T ss_pred             CCcEEEEEecCCCcceeCCEE-ECCEEEEEeCCCEEEEEe
Confidence            998665554433333222122 245788889999999987

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.37  E-value=1.3e-11  Score=125.82  Aligned_cols=182  Identities=10%  Similarity=0.072  Sum_probs=137.8

Q ss_pred             ceEEEEEeeCCCEEEEEeCCCcEEEEEccccc---------eeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEE
Q 038577          393 AVTALHFMANNHSLLSASLDGTVRAWDLFRYR---------NFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWS  463 (860)
Q Consensus       393 ~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d  463 (860)
                      ++..+++++....+++|+.+ .+.+|++...+         .......+... +..++|  ++.+|+++ .++ .|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~-~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRN-ALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESS-EEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCC-cEEEEE
Confidence            68899999999999999988 56669976544         11111122334 899999  99999999 555 999999


Q ss_pred             CCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeE
Q 038577          464 MKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQI  543 (860)
Q Consensus       464 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  543 (860)
                      +.+.........|..++.++.+.+..  +++++.||.+.+||+.++....    +...|++++|||+|  ++.|..||.+
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i  184 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSF  184 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCE
T ss_pred             chhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcE
Confidence            99877766777788889988877553  8889999999999998776432    45689999999999  7889999999


Q ss_pred             EEEeCCCCce--eEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEe
Q 038577          544 HFWDPLNGEL--MYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAG  599 (860)
Q Consensus       544 ~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~  599 (860)
                      ++|+...++.  ..++.......           ....+...|.+++|.+++.++++-
T Consensus       185 ~~~~~~~~~~~~k~~I~~Pp~~~-----------~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          185 QSFAWRNGEMEKQFEFSLPSELE-----------ELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EEEEEETTEEEEEEEECCCHHHH-----------TSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEEcCCCccccccceecCCcccc-----------cccCCCeeEEEEEEecCCeEEEEE
Confidence            9999887775  55663322110           001123469999999999999873

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.36  E-value=2.2e-10  Score=116.06  Aligned_cols=237  Identities=12%  Similarity=0.003  Sum_probs=159.4

Q ss_pred             EEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 038577          300 HLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVS  379 (860)
Q Consensus       300 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  379 (860)
                      ..+...........|+++|+.++.+...++.|..|+.. +. ...+..+...+..++++++|+++++...++.|.+|+..
T Consensus        38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~  115 (305)
T 3dr2_A           38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD  115 (305)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence            33444445677899999999888887777999999984 43 23334455678999999999977766666789999976


Q ss_pred             CCeeEEEeecC----CCceEEEEEeeCCCEEEE----EeC-------------CCcEEEEEccccceeeEeeCCCCCcEE
Q 038577          380 SGFCFVTFTEH----TNAVTALHFMANNHSLLS----ASL-------------DGTVRAWDLFRYRNFRTFTTPSSRQFV  438 (860)
Q Consensus       380 ~~~~~~~~~~~----~~~v~~i~~~~~~~~l~s----~~~-------------dg~i~~wd~~~~~~~~~~~~~~~~~~~  438 (860)
                       ++........    ...+.+++++++|+.+++    +..             .+.|..||..+++.....   ......
T Consensus       116 -g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~~p~  191 (305)
T 3dr2_A          116 -GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DLDHPN  191 (305)
T ss_dssp             -SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EESSEE
T ss_pred             -CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cCCCCc
Confidence             5433222111    234678999999987776    321             245777776555543332   223567


Q ss_pred             EEEECCCCCEEEEEecCC-----CeEEEEECCCCceE--EEe-cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 038577          439 SLASDQSGEVICAGTLDS-----FEIFVWSMKTGRLL--DIL-SGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGK  510 (860)
Q Consensus       439 ~~~~~~~~~~l~~~~~~~-----~~i~v~d~~~~~~~--~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~  510 (860)
                      .++++|+++.|+++....     ..|++|++..+...  ..+ ....+....++++++|++.++ +.+| |.+|+.. ++
T Consensus       192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~g-v~~~~~~-g~  268 (305)
T 3dr2_A          192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGTG-VCVFDSD-GQ  268 (305)
T ss_dssp             EEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSSE-EEEECTT-SC
T ss_pred             ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCCc-EEEECCC-CC
Confidence            899999999888876651     38999998765421  111 112344567899999995544 4454 9999974 44


Q ss_pred             ceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEe
Q 038577          511 GSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWD  547 (860)
Q Consensus       511 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  547 (860)
                      ....+..+ ..+.+++|+|+++.|++++.++ +..++
T Consensus       269 ~~~~~~~~-~~~~~~~f~~d~~~L~it~~~~-l~~~~  303 (305)
T 3dr2_A          269 LLGHIPTP-GTASNCTFDQAQQRLFITGGPC-LWMLP  303 (305)
T ss_dssp             EEEEEECS-SCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred             EEEEEECC-CceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence            34444333 3688999999999998888764 44433

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.34  E-value=1.9e-10  Score=121.32  Aligned_cols=272  Identities=10%  Similarity=-0.013  Sum_probs=191.5

Q ss_pred             EEEEEcCCeEEEEECCCceeEEEEeecC---------------------------------------ceeEEEEEee---
Q 038577          279 VVVGFSNGVFGLYQMPDFVCIHLLSISR---------------------------------------EKITTAVFNE---  316 (860)
Q Consensus       279 l~~~~~~g~i~~~~~~~~~~~~~~~~~~---------------------------------------~~i~~~~~s~---  316 (860)
                      +.+|+..|.++++-+++++.+..+....                                       +.......|.   
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g   97 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   97 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence            5678889999999999888777653211                                       1223355555   


Q ss_pred             --CCCEEEEEEccCCcEEEEEccCceEEEEecC-cccCeEEEEE-c-CCCCEEEEEe------------------CCCcE
Q 038577          317 --LGNWLVFGCAKLGQLLVWEWRSESYILKQQG-HYFDVNCLAY-S-PDSQLLATGA------------------DDNKV  373 (860)
Q Consensus       317 --~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~-~~~~v~~~~~-s-~~~~~l~~~~------------------~dg~i  373 (860)
                        ||+++.+....++.|.+.|+.+.+....+.- .......+++ + |+++++++++                  .++.+
T Consensus        98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A           98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence              9999999888888999999999987774432 2245778888 5 9999998885                  24579


Q ss_pred             EEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCC--------------------------------------cE
Q 038577          374 KVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDG--------------------------------------TV  415 (860)
Q Consensus       374 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg--------------------------------------~i  415 (860)
                      .+.|..+.+...++.-.. ....++++|+|+++++.+.+.                                      .|
T Consensus       178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V  256 (595)
T 1fwx_A          178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  256 (595)
T ss_dssp             EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence            999999998888876433 567788999999998888553                                      35


Q ss_pred             EEEEccc--cce-eeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCc------------eEEEecCcccCe
Q 038577          416 RAWDLFR--YRN-FRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGR------------LLDILSGHEGPV  480 (860)
Q Consensus       416 ~~wd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~------------~~~~~~~h~~~v  480 (860)
                      .+.|..+  ++. ...+..+  ....++.++|||+++++++....++.++|+.+.+            ...... -....
T Consensus       257 ~VID~~~~~~~~~~~~Ipvg--~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP  333 (595)
T 1fwx_A          257 KVVDGRKEASSLFTRYIPIA--NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGP  333 (595)
T ss_dssp             EEEECSGGGCCSSEEEEEEE--SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCE
T ss_pred             EEEeCcccCCceeEEEEecC--CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCc
Confidence            5566665  333 3344332  2446789999999999988877799999999653            333333 33457


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEccC----------CcceeEEcccCCCe-----EEEEEeeCCCEEEEEeC---CCe
Q 038577          481 HGLVFSPTNATLASSSWDKTVRLWNVFE----------GKGSVESFPHTHDV-----LTVVYRPDGRQLACSTL---DGQ  542 (860)
Q Consensus       481 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~---dg~  542 (860)
                      ..++|+|+|...++.--|++|.+||+..          .+.+..+..|-.+-     ..+.++|||++|+++..   |+.
T Consensus       334 ~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~  413 (595)
T 1fwx_A          334 LHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRF  413 (595)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSS
T ss_pred             ceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccc
Confidence            8899999994445566799999999977          33333333333221     12355899999999854   332


Q ss_pred             ----------EEEEeCCCCcee
Q 038577          543 ----------IHFWDPLNGELM  554 (860)
Q Consensus       543 ----------i~iwd~~~~~~~  554 (860)
                                -.++|+..+++.
T Consensus       414 ~~~gp~~~~~~ql~dis~~~m~  435 (595)
T 1fwx_A          414 LNVGPLKPENDQLIDISGDKMV  435 (595)
T ss_dssp             CCCCSSCCEEEEEEECSSSSCE
T ss_pred             ccCCCCCCCcceEEEcCCCcEE
Confidence                      288999665543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.34  E-value=1.5e-09  Score=110.39  Aligned_cols=235  Identities=14%  Similarity=0.127  Sum_probs=155.7

Q ss_pred             CCCCEEEEE-eCCCcEEEEECCCC----eeEEEee------c-CCCceEEEEEeeCCCEEEEEeCC------CcEEEEEc
Q 038577          359 PDSQLLATG-ADDNKVKVWTVSSG----FCFVTFT------E-HTNAVTALHFMANNHSLLSASLD------GTVRAWDL  420 (860)
Q Consensus       359 ~~~~~l~~~-~~dg~i~iwd~~~~----~~~~~~~------~-~~~~v~~i~~~~~~~~l~s~~~d------g~i~~wd~  420 (860)
                      +++++|++. ..++.|.++|+.+.    +...++.      . .......+..+|+| .++++..+      |.+.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            777777664 45789999998755    5666662      1 12356678889999 66666555      78999999


Q ss_pred             cccceeeEeeCCCCCc--EEEEEECCCCCEEEEEec------------------CCCeEEEEECCCCceEEEecCc--cc
Q 038577          421 FRYRNFRTFTTPSSRQ--FVSLASDQSGEVICAGTL------------------DSFEIFVWSMKTGRLLDILSGH--EG  478 (860)
Q Consensus       421 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~------------------~~~~i~v~d~~~~~~~~~~~~h--~~  478 (860)
                      .+.+.+..+.......  ...+.++|+++.++++..                  .+.+|.+||+.+++.+.++..-  ..
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~  251 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR  251 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence            9999998887543322  335788999998888852                  2449999999999888887642  13


Q ss_pred             CeEEEEE--cCCCCEEEEEe------CCCcEEEEEccCCccee----EEcc----------------cCCCeEEEEEeeC
Q 038577          479 PVHGLVF--SPTNATLASSS------WDKTVRLWNVFEGKGSV----ESFP----------------HTHDVLTVVYRPD  530 (860)
Q Consensus       479 ~v~~l~~--s~~~~~l~s~~------~dg~i~iwd~~~~~~~~----~~~~----------------~~~~v~~~~~s~~  530 (860)
                      ....+.|  +|+++++..++      .+++|.+|....+....    .+..                .......+.+|||
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D  331 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD  331 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence            3455656  99999877766      46688877665432110    0000                0245788999999


Q ss_pred             CCEEEEEeC-CCeEEEEeCCC---CceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEec
Q 038577          531 GRQLACSTL-DGQIHFWDPLN---GELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGG  600 (860)
Q Consensus       531 ~~~l~~~~~-dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~  600 (860)
                      |++|+++.. .+.|.+||+..   .+.+..+.....+..    ...  .....-......+++||||++|+++.
T Consensus       332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~----~~~--~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHR----ADH--PAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTC----BCC--TTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecc----ccc--cccccCCCCCCEEEEcCCCCEEEEEc
Confidence            999988865 57899999863   344544443211000    000  00000011357899999999999887

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.33  E-value=3.9e-11  Score=122.41  Aligned_cols=170  Identities=14%  Similarity=0.099  Sum_probs=129.7

Q ss_pred             CCcEEEe-CCCEEEeeeCCeEEEEECCCCc---------EEe-eccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEccc
Q 038577           15 GGNAVLS-QNTKLISPVGNRVSVTDLIKSK---------TVT-LPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHC   83 (860)
Q Consensus        15 ~~~~~~s-dg~~l~~~~~~~i~v~d~~~~~---------~~~-~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~   83 (860)
                      ...++++ +.++++++....+++|+++..+         ... ....+.. |++++|  |+++|+++ .++.|.+||+.+
T Consensus        40 ~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~s  115 (388)
T 1xip_A           40 LQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEE  115 (388)
T ss_dssp             CBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSS
T ss_pred             ccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchh
Confidence            4569999 9999999999999999976544         111 1224556 999999  99999999 789999999986


Q ss_pred             CeEEEEee-cCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecC
Q 038577           84 HVVLHRVR-FKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKD  162 (860)
Q Consensus        84 ~~~~~~~~-~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d  162 (860)
                      ........ +..++.++.+.+.. ++++..+|.+.+||+.++..       ..    +...|+|++|||+|  ++.|..|
T Consensus       116 l~~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~-------~~----~~~~Vs~v~WSpkG--~~vg~~d  181 (388)
T 1xip_A          116 LSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKST-------KQ----LAQNVTSFDVTNSQ--LAVLLKD  181 (388)
T ss_dssp             TTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCE-------EE----EEESEEEEEECSSE--EEEEETT
T ss_pred             hhccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcc-------cc----ccCCceEEEEcCCc--eEEEEcC
Confidence            65444443 67789998888753 44444999999999997762       11    44689999999999  7889999


Q ss_pred             CeEEEEeecccccCccccc--ceEe------e---cCCCcEEEEEEccCCCCCccceEEEEc
Q 038577          163 LAVRLFYVKEKLKGIHTNK--PFLL------L---GHRDSVVGCFFSVDKKTDKVNRIYTIA  213 (860)
Q Consensus       163 g~v~vwd~~~~~~~~~~~~--~~~~------~---~h~~~i~~~~~~~~~~~~~~~~l~s~~  213 (860)
                      |.+++|+.+..      ..  ...+      .   +|...|.++.|.+++.     ++++-+
T Consensus       182 g~i~~~~~~~~------~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~-----flv~y~  232 (388)
T 1xip_A          182 RSFQSFAWRNG------EMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD-----FLAVFG  232 (388)
T ss_dssp             SCEEEEEEETT------EEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE-----EEEEEE
T ss_pred             CcEEEEcCCCc------cccccceecCCcccccccCCCeeEEEEEEecCCe-----EEEEEc
Confidence            99999988876      21  2223      2   4789999999999987     666543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.33  E-value=5.9e-11  Score=122.39  Aligned_cols=265  Identities=8%  Similarity=-0.007  Sum_probs=178.0

Q ss_pred             CceEEEEecCCCCEEEEEEc--CCeEEEEECCCceeEEEEe-------ecCceeEEEEEeeCCCEEEEEEcc----CCcE
Q 038577          265 SKVTACDYHRGLDMVVVGFS--NGVFGLYQMPDFVCIHLLS-------ISREKITTAVFNELGNWLVFGCAK----LGQL  331 (860)
Q Consensus       265 ~~v~~~~~~~~~~~l~~~~~--~g~i~~~~~~~~~~~~~~~-------~~~~~i~~~~~s~~~~~l~~~~~~----~g~i  331 (860)
                      ..+..++++|+|+.+++...  ++.+++|.+.+++. ..+.       .+...+..++++++|+..++-...    .+.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            46889999999998887542  34244444434442 2221       123578999999998765554331    4789


Q ss_pred             EEEEccCceEEEEecCc------ccCeEEEEEcCCCCEE-EEEe---CCCcEEEEECCCCeeEEEeecCCCceE-EEEEe
Q 038577          332 LVWEWRSESYILKQQGH------YFDVNCLAYSPDSQLL-ATGA---DDNKVKVWTVSSGFCFVTFTEHTNAVT-ALHFM  400 (860)
Q Consensus       332 ~v~d~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l-~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~-~i~~~  400 (860)
                      .+||+.+++.+..+...      ...+..+++++++..+ ++..   .++.|.+||+.+++..+.+..|..... ...+.
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~  175 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV  175 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence            99999998876655322      2346889999865454 4444   578999999998887777655432111 14455


Q ss_pred             eCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCC---Cc-----eEE-
Q 038577          401 ANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT---GR-----LLD-  471 (860)
Q Consensus       401 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~---~~-----~~~-  471 (860)
                      +++..+.+.+.++.+..|..               .+..++++|+|+.|+++...+..++.++...   +.     ... 
T Consensus       176 ~~g~~~~~~~~~g~~~~~~~---------------~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  240 (343)
T 2qe8_A          176 IDGVPVQIGQPDGTVIRPHL---------------GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK  240 (343)
T ss_dssp             ETTEECBEECTTSCEECCCC---------------CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred             ECCEEEEeccCCCceeceec---------------ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc
Confidence            67777777788888766532               3578999999999998887776777776421   11     000 


Q ss_pred             -EecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc--ccCCCeEEEEEeeCCCEEEEEeCCCeEEEE
Q 038577          472 -ILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF--PHTHDVLTVVYRPDGRQLACSTLDGQIHFW  546 (860)
Q Consensus       472 -~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  546 (860)
                       ...++.+....++++++|.++++...++.|.+||..+++ .....  .....+.+++|.++++++++.+..+.+.+|
T Consensus       241 ~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~-~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          241 IERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA-YKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             CEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE-EEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred             eEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC-EEEEEECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence             111344456789999999999998889999999985554 22222  234568999999999887777655444444

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.31  E-value=3.7e-06  Score=92.78  Aligned_cols=464  Identities=9%  Similarity=-0.044  Sum_probs=268.9

Q ss_pred             cEEEe-CCCEEEeee--CCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEE-cCCCcEEEEEcccCeEEEEe-e
Q 038577           17 NAVLS-QNTKLISPV--GNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTV-DENQRCHFINLHCHVVLHRV-R   91 (860)
Q Consensus        17 ~~~~s-dg~~l~~~~--~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~-~~d~~i~vwd~~~~~~~~~~-~   91 (860)
                      .++|. +++.|+.+.  ++.|..+++.+.....+..........+|+.+.+..|..+ ...+.|.+.++........+ .
T Consensus        41 ~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~  120 (628)
T 4a0p_A           41 ALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWK  120 (628)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECS
T ss_pred             EEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeC
Confidence            57888 666776653  4789999988765544443333567899999877666555 44678999998755332222 2


Q ss_pred             cCCceeEEEECCCCCEEEEEe---CCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEee-cCCeEEE
Q 038577           92 FKYPVNAILFSPNGKYIAVGT---GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGS-KDLAVRL  167 (860)
Q Consensus        92 ~~~~v~~~~fspdg~~la~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~-~dg~v~v  167 (860)
                      .-....+|++.|...+|....   .+.|...++.+...        ..+...-.....++++++++.|..+. ..+.|..
T Consensus       121 ~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~--------~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~  192 (628)
T 4a0p_A          121 DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER--------TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIES  192 (628)
T ss_dssp             SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--------EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce--------EEEECCCCCcceEEEccccCEEEEEECCCCEEEE
Confidence            334568999999666666653   56888888877652        22223445678999999877776664 4577888


Q ss_pred             EeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCC--------
Q 038577          168 FYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEP--------  239 (860)
Q Consensus       168 wd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~--------  239 (860)
                      .+++..      .. ..+........++++.. +.     ..++-...+.|...|..++.............        
T Consensus       193 ~d~dG~------~~-~v~~~~l~~P~glav~~-~~-----ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~  259 (628)
T 4a0p_A          193 SNMLGL------NR-EVIADDLPHPFGLTQYQ-DY-----IYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHS  259 (628)
T ss_dssp             EETTSC------SC-EEEEECCSCEEEEEEET-TE-----EEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECG
T ss_pred             EcCCCC------ce-EEeeccCCCceEEEEEC-CE-----EEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeee
Confidence            888765      12 23344445566788765 33     44455557788888765554321111000000        


Q ss_pred             ------CCCCCCcceeeeEEeeeeccccCCCCceEEEE-----ecCC-------CCEEEEEEcCCeEEEEECCCcee-EE
Q 038577          240 ------PSPGTPERRVKKWGLLRKDDFSQAPSKVTACD-----YHRG-------LDMVVVGFSNGVFGLYQMPDFVC-IH  300 (860)
Q Consensus       240 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----~~~~-------~~~l~~~~~~g~i~~~~~~~~~~-~~  300 (860)
                            ..-..........-+      ....+...|.+     ..++       ..+++.+. ...|+-..+..... ..
T Consensus       260 ~~q~~~n~C~~~ng~C~~~C~------~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~-~~~i~~i~l~~~~~~~~  332 (628)
T 4a0p_A          260 SRQSGWNECASSNGHCSHLCL------AVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQ-KSAINRMVIDEQQSPDI  332 (628)
T ss_dssp             GGSCCCCTTTTTGGGCSSEEE------EETTTEEEEECSTTCEECTTSSCEECCSSEEEEEE-TTEEEEECCCTTCCCCE
T ss_pred             cccccceEeccCCCCcchhhh------cCCCCCeeEEcCCCcEecccCCcCccccceeeeec-cceEEEEecccccCceE
Confidence                  000000000000000      00001111111     1112       23344333 44565555543221 11


Q ss_pred             EEee-cCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecC------cccCeEEEEEcCCCCEEE-EEeCCCc
Q 038577          301 LLSI-SREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQG------HYFDVNCLAYSPDSQLLA-TGADDNK  372 (860)
Q Consensus       301 ~~~~-~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~-~~~~dg~  372 (860)
                      .+.. .-..+..++|.+.+..+..+....+.|+.++.........+..      ....+..+++...++.|. +-+..+.
T Consensus       333 ~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~  412 (628)
T 4a0p_A          333 ILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNV  412 (628)
T ss_dssp             ECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCE
Confidence            2222 2246788999998888888877778898888765432222221      234578999998866554 5556788


Q ss_pred             EEEEECCCCeeEEEe-ecCCCceEEEEEee-CCCEEEEEeCCC--cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCE
Q 038577          373 VKVWTVSSGFCFVTF-TEHTNAVTALHFMA-NNHSLLSASLDG--TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEV  448 (860)
Q Consensus       373 i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~-~~~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (860)
                      |.+.++. |+....+ ........++++.| .|..+++-....  .|...++. +.....+....-.....+++++++..
T Consensus       413 I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~~~~l~~~~l~~P~gla~D~~~~~  490 (628)
T 4a0p_A          413 INVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD-GTEREVLFFSGLSKPIALALDSRLGK  490 (628)
T ss_dssp             EEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTE
T ss_pred             EEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC-CCCcEEEEeccCCCccEEEEeCCCCE
Confidence            9999986 4444333 33456789999999 454444433332  46555553 44344444434456789999999988


Q ss_pred             EEEEecCCCeEEEEECCCCceEEEec-CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcce
Q 038577          449 ICAGTLDSFEIFVWSMKTGRLLDILS-GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGS  512 (860)
Q Consensus       449 l~~~~~~~~~i~v~d~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  512 (860)
                      |+.+....+.|..+++.... ...+. .......++++.. +..+++-...+.|...|..+++..
T Consensus       491 LYw~D~~~~~I~~~~~dG~~-r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~  553 (628)
T 4a0p_A          491 LFWADSDLRRIESSDLSGAN-RIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGR  553 (628)
T ss_dssp             EEEEETTTTEEEEEETTSCS-CEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCC
T ss_pred             EEEEeCCCCEEEEEeCCCCc-eEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCc
Confidence            88887766699999996443 33332 3344566777754 334444444566777776665533

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.29  E-value=2.9e-11  Score=124.55  Aligned_cols=299  Identities=11%  Similarity=0.043  Sum_probs=195.0

Q ss_pred             ecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccC
Q 038577          272 YHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFD  351 (860)
Q Consensus       272 ~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~  351 (860)
                      ...++ .+.+++.++.+..|| .+++...........+.++...++|... +++ . + +..+|. +++...........
T Consensus        27 ~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t-~-~-l~~~d~-~g~~~~~~~~~~~~   99 (330)
T 3hxj_A           27 LAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIY-FGS-D-K-VYAINP-DGTEKWRFDTKKAI   99 (330)
T ss_dssp             ECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEEC-CSS-C-E-EEEECC-CGGGGGGSCC----
T ss_pred             EccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEE-Eec-C-c-EEEECC-CCcEEEEEECCCCc
Confidence            33444 467777888899999 7888766555544455666666666533 332 2 3 888885 44433222222222


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeC
Q 038577          352 VNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTT  431 (860)
Q Consensus       352 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~  431 (860)
                      .....+.  +..+.+++.++.+..+|.. ++.......+...+.++...+++. ++.++.++.+..+|.. ++....+..
T Consensus       100 ~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~  174 (330)
T 3hxj_A          100 VSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKT  174 (330)
T ss_dssp             -CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEEC
T ss_pred             ccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEec
Confidence            2223333  4567788888999999988 777776665555666777776665 6667788999999988 776666554


Q ss_pred             CCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcc
Q 038577          432 PSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKG  511 (860)
Q Consensus       432 ~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~  511 (860)
                      +. ..+.++..++++.+.+..   + .+..+| .+++....+......+.++...++|. +..++.++.+..+|. +++.
T Consensus       175 ~~-~~~~~~~~d~~g~l~v~t---~-~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~  246 (330)
T 3hxj_A          175 ND-AITSAASIGKDGTIYFGS---D-KVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTE  246 (330)
T ss_dssp             SS-CCCSCCEECTTCCEEEES---S-SEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCE
T ss_pred             CC-CceeeeEEcCCCEEEEEe---C-EEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCE
Confidence            32 345567777888765544   4 799999 77888777766667788899988876 445666778888874 4444


Q ss_pred             eeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEec
Q 038577          512 SVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSA  591 (860)
Q Consensus       512 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  591 (860)
                      ..........+..+.+.+++ .|.+++.+|.|..+|. +++.+..+.....                    .+.++..++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~--------------------~~~~~~~d~  304 (330)
T 3hxj_A          247 KWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSW--------------------IIATPVIDE  304 (330)
T ss_dssp             EEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSC--------------------CCSCCEECT
T ss_pred             eEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCc--------------------cccceEEcC
Confidence            44443333334445565555 5677888889999996 7777766554322                    356777778


Q ss_pred             CCCEEEEecCCCeEEEEECCCc
Q 038577          592 DGSYILAGGSSKYICMYDVADQ  613 (860)
Q Consensus       592 ~g~~l~~~~~dg~v~vwd~~~~  613 (860)
                      +|++ ..++.+|.+++...+..
T Consensus       305 ~g~l-~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          305 NGTI-YFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             TCCE-EEECTTSCEEEEEC---
T ss_pred             CCEE-EEEcCCCeEEEEecccc
Confidence            8874 55888999988876543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.28  E-value=5.2e-10  Score=118.10  Aligned_cols=237  Identities=8%  Similarity=0.047  Sum_probs=164.5

Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEeec---------------------------------C------CCceEEEEEee---
Q 038577          364 LATGADDNKVKVWTVSSGFCFVTFTE---------------------------------H------TNAVTALHFMA---  401 (860)
Q Consensus       364 l~~~~~dg~i~iwd~~~~~~~~~~~~---------------------------------~------~~~v~~i~~~~---  401 (860)
                      +.+|+..|.++++-+.+++.+..+.-                                 +      .+.......|.   
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g   97 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   97 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence            56788889999999888877766521                                 1      12222345554   


Q ss_pred             --CCCEEEEEeC-CCcEEEEEccccceeeEeeCCCCCcEEEEEE-C-CCCCEEEEEec-----------------CCCeE
Q 038577          402 --NNHSLLSASL-DGTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-D-QSGEVICAGTL-----------------DSFEI  459 (860)
Q Consensus       402 --~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~-----------------~~~~i  459 (860)
                        ||+++..... ++.|.+.|+.+.++.+.+..+.......+++ + |+++++++++.                 ..+.+
T Consensus        98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A           98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence              7877776655 5569999999999998777776667888887 5 99999999852                 22389


Q ss_pred             EEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCC--------------------------------------cE
Q 038577          460 FVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDK--------------------------------------TV  501 (860)
Q Consensus       460 ~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg--------------------------------------~i  501 (860)
                      .++|..+.+...++.--. ....++++|+|+++++++.+.                                      .|
T Consensus       178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V  256 (595)
T 1fwx_A          178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  256 (595)
T ss_dssp             EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence            999999999888776322 457788999999999888553                                      36


Q ss_pred             EEEEccC--CcceeEEcccCCCeEEEEEeeCCCEEEEEe-CCCeEEEEeCCCCceeE--EEecccccCCCcccccccccc
Q 038577          502 RLWNVFE--GKGSVESFPHTHDVLTVVYRPDGRQLACST-LDGQIHFWDPLNGELMY--TIEGRRDISGGRLMTDRRSAA  576 (860)
Q Consensus       502 ~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  576 (860)
                      .+.|..+  ++.......-.....++.++|||+++++++ .+.+|.++|+.+.+...  .+....           ....
T Consensus       257 ~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~-----------~v~~  325 (595)
T 1fwx_A          257 KVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS-----------AVVA  325 (595)
T ss_dssp             EEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG-----------GEEE
T ss_pred             EEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc-----------ceEE
Confidence            6777766  332123333344567799999999888775 46789999998653210  000000           0011


Q ss_pred             ccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 038577          577 NSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVAD  612 (860)
Q Consensus       577 ~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~  612 (860)
                      ...-+.....++|+|||...++.--|+.|.+||+++
T Consensus       326 ~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          326 EPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             CCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             EcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            112244589999999994444566799999999987

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.23  E-value=3.6e-08  Score=97.37  Aligned_cols=251  Identities=9%  Similarity=-0.019  Sum_probs=164.0

Q ss_pred             CEEEEEEcCCeEEEEECCCcee-----EEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccC
Q 038577          277 DMVVVGFSNGVFGLYQMPDFVC-----IHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFD  351 (860)
Q Consensus       277 ~~l~~~~~~g~i~~~~~~~~~~-----~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~  351 (860)
                      .+|+.+.. +.|+.+++.....     ...+......+..+++++++..+.++....+.|..++................
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~   80 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence            34555543 4788888764432     11222233467899999998888888877789999998876544333333346


Q ss_pred             eEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeC---CCcEEEEEccccceee
Q 038577          352 VNCLAYSPDSQLLATG-ADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASL---DGTVRAWDLFRYRNFR  427 (860)
Q Consensus       352 v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~---dg~i~~wd~~~~~~~~  427 (860)
                      ...+++++++..++.+ ...+.|.++++..................++++|++..|+.+..   .+.|..+++.. ....
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~  159 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRR  159 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCE
T ss_pred             ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcE
Confidence            7899999976555554 45678999998754332223222356789999997666655543   36788888753 3333


Q ss_pred             EeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEe-CCCcEEEEEc
Q 038577          428 TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSS-WDKTVRLWNV  506 (860)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~  506 (860)
                      .+..........+++++++..|+++....+.|.++|.........+.+ ......++..  +..+..+. ..+.|..+|.
T Consensus       160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~  236 (267)
T 1npe_A          160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDL  236 (267)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred             EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeC
Confidence            333233346789999999988888887766999999986544444332 2334567664  45555454 5688999999


Q ss_pred             cCCcceeEEcccC-CCeEEEEEeeCCC
Q 038577          507 FEGKGSVESFPHT-HDVLTVVYRPDGR  532 (860)
Q Consensus       507 ~~~~~~~~~~~~~-~~v~~~~~s~~~~  532 (860)
                      .+++....+.... .....+++.|++.
T Consensus       237 ~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          237 AISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             TTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             CCCCceEEEccccccccceeeecCccC
Confidence            8887555554332 2467788888764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.22  E-value=9.1e-11  Score=120.81  Aligned_cols=302  Identities=13%  Similarity=0.057  Sum_probs=192.1

Q ss_pred             eeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeec-CCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEE
Q 038577           55 ICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRF-KYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFEL  133 (860)
Q Consensus        55 v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~-~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~  133 (860)
                      ..++.+..+|. |.+++.++.|..|| .+++.+..... ...+.++...++|.+.+ +..+ +..+|. +++....    
T Consensus        22 ~~~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~-l~~~d~-~g~~~~~----   92 (330)
T 3hxj_A           22 DSSPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYF-GSDK-VYAINP-DGTEKWR----   92 (330)
T ss_dssp             CCCCEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECC-SSCE-EEEECC-CGGGGGG----
T ss_pred             ccCceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEE-ecCc-EEEECC-CCcEEEE----
Confidence            34566666775 55666788999999 88988776653 33457788887876554 4333 888886 4432111    


Q ss_pred             EEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEc
Q 038577          134 IRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIA  213 (860)
Q Consensus       134 ~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~  213 (860)
                         +...........+.  +..+..++.++.+..+|.. +      ........+...+.++...+++      .++.++
T Consensus        93 ---~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g------~~~~~~~~~~~~~~~~~~~~~g------~l~vgt  154 (330)
T 3hxj_A           93 ---FDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-G------TEKWRFKTKKAIYATPIVSEDG------TIYVGS  154 (330)
T ss_dssp             ---SCC-----CCEEEE--TTEEEEECTTSEEEEECTT-S------CEEEEEECSSCCCSCCEECTTS------CEEEEC
T ss_pred             ---EECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-C------CEEEEEcCCCceeeeeEEcCCC------EEEEEc
Confidence               11111112222333  4567778888999999987 5      2333333344445556666666      577888


Q ss_pred             CCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEEC
Q 038577          214 RDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQM  293 (860)
Q Consensus       214 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~  293 (860)
                      .++.+..++.. +..                      .|....      ....+.++...+++.. .+++  +.+..++ 
T Consensus       155 ~~~~l~~~d~~-g~~----------------------~~~~~~------~~~~~~~~~~d~~g~l-~v~t--~~l~~~d-  201 (330)
T 3hxj_A          155 NDNYLYAINPD-GTE----------------------KWRFKT------NDAITSAASIGKDGTI-YFGS--DKVYAIN-  201 (330)
T ss_dssp             TTSEEEEECTT-SCE----------------------EEEEEC------SSCCCSCCEECTTCCE-EEES--SSEEEEC-
T ss_pred             CCCEEEEECCC-CCE----------------------eEEEec------CCCceeeeEEcCCCEE-EEEe--CEEEEEC-
Confidence            88999999877 322                      343321      1234555666677764 4455  7889999 


Q ss_pred             CCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcE
Q 038577          294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKV  373 (860)
Q Consensus       294 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  373 (860)
                      .+++...........+.++...++|...+ ++.+ +.+..++. ++............+.++.+.+++ .|.+++.+|.+
T Consensus       202 ~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~-~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl  277 (330)
T 3hxj_A          202 PDGTEKWNFYAGYWTVTRPAISEDGTIYV-TSLD-GHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHL  277 (330)
T ss_dssp             TTSCEEEEECCSSCCCSCCEECTTSCEEE-EETT-TEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEE
T ss_pred             CCCcEEEEEccCCcceeceEECCCCeEEE-EcCC-CeEEEECC-CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCE
Confidence            67777777666666788888888875444 4443 78888874 455555554444444456666566 56677888899


Q ss_pred             EEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccc
Q 038577          374 KVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFR  422 (860)
Q Consensus       374 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~  422 (860)
                      ..+|. +++....+......+.++...+++. |..++.+|.+++.....
T Consensus       278 ~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          278 YAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLE  324 (330)
T ss_dssp             EEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred             EEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence            99996 6777776665566677777767774 67788999998876543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.20  E-value=3.2e-09  Score=119.18  Aligned_cols=282  Identities=13%  Similarity=0.141  Sum_probs=188.5

Q ss_pred             CCEEEEEEcCCeEEEEECCCceeEEEEeecCcee-----------EEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEE
Q 038577          276 LDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKI-----------TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILK  344 (860)
Q Consensus       276 ~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i-----------~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~  344 (860)
                      +..+++++.++.+.-+|..+++.+..+.......           ..+++  .+..+++++. ++.|..+|..+++.+.+
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~-dg~l~alD~~tG~~~W~  142 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTL-DGRLIALDAKTGKAIWS  142 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECT-TSEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcC-CCEEEEEECCCCCEeee
Confidence            5678888899999999999999988776533210           11222  3456666654 49999999999999887


Q ss_pred             ecCccc-CeEEEEEcC--CCCEEEEEeC------CCcEEEEECCCCeeEEEeecCC------------------------
Q 038577          345 QQGHYF-DVNCLAYSP--DSQLLATGAD------DNKVKVWTVSSGFCFVTFTEHT------------------------  391 (860)
Q Consensus       345 ~~~~~~-~v~~~~~s~--~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~------------------------  391 (860)
                      ...... ....+..+|  .+..++++..      +|.|..+|..+|+.+..+....                        
T Consensus       143 ~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~  222 (668)
T 1kv9_A          143 QQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY  222 (668)
T ss_dssp             EECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred             eccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccce
Confidence            754210 000011111  1335555543      5899999999999988775311                        


Q ss_pred             -------CceEEEEEeeCCCEEEEEeCCC-------------------cEEEEEccccceeeEeeCCCC--------CcE
Q 038577          392 -------NAVTALHFMANNHSLLSASLDG-------------------TVRAWDLFRYRNFRTFTTPSS--------RQF  437 (860)
Q Consensus       392 -------~~v~~i~~~~~~~~l~s~~~dg-------------------~i~~wd~~~~~~~~~~~~~~~--------~~~  437 (860)
                             .....+++.++...++.+..++                   .|..+|..+++....+.....        .+.
T Consensus       223 w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~  302 (668)
T 1kv9_A          223 WKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQI  302 (668)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred             eeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCc
Confidence                   0112367888878888887765                   399999999999888775421        222


Q ss_pred             EEEEECCCCC---EEEEEecCCCeEEEEECCCCceEEEecCcc------------cCe----------------------
Q 038577          438 VSLASDQSGE---VICAGTLDSFEIFVWSMKTGRLLDILSGHE------------GPV----------------------  480 (860)
Q Consensus       438 ~~~~~~~~~~---~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~------------~~v----------------------  480 (860)
                      ....+..+|+   .+++++.++ .++++|..+|+++...+...            .++                      
T Consensus       303 ~~~d~~~~G~~~~~v~~~~~~G-~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~  381 (668)
T 1kv9_A          303 TLAELNIDGKPRKVLMQAPKNG-FFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH  381 (668)
T ss_dssp             EEEEEEETTEEEEEEEECCTTS-EEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS
T ss_pred             EEEEeccCCcEEEEEEEECCCC-EEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcccc
Confidence            2233334565   577777777 99999999999885433211            000                      


Q ss_pred             --EEEEEcCCCCEEEEEe------------------------------------CCCcEEEEEccCCcceeEEcccCCCe
Q 038577          481 --HGLVFSPTNATLASSS------------------------------------WDKTVRLWNVFEGKGSVESFPHTHDV  522 (860)
Q Consensus       481 --~~l~~s~~~~~l~s~~------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~v  522 (860)
                        ..++++|+...++...                                    .+|.|..||+.+++....... ..+.
T Consensus       382 ~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~-~~~~  460 (668)
T 1kv9_A          382 NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY-PTHW  460 (668)
T ss_dssp             CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE-SSSC
T ss_pred             CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC-CCCC
Confidence              1267788766655421                                    247899999999986555432 2333


Q ss_pred             EEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccc
Q 038577          523 LTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRD  562 (860)
Q Consensus       523 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  562 (860)
                      ....+...+.++++++.||.++.||..+|+.+..++....
T Consensus       461 ~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~  500 (668)
T 1kv9_A          461 NGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSG  500 (668)
T ss_dssp             CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             cCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCC
Confidence            4445666788999999999999999999999999877543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.19  E-value=1.2e-07  Score=93.60  Aligned_cols=237  Identities=11%  Similarity=0.034  Sum_probs=151.1

Q ss_pred             CEEEEEeCCCcEEEEECCCCee-----EEEeecCCCceEEEEEeeCCCEEE-EEeCCCcEEEEEccccceeeEeeCCCCC
Q 038577          362 QLLATGADDNKVKVWTVSSGFC-----FVTFTEHTNAVTALHFMANNHSLL-SASLDGTVRAWDLFRYRNFRTFTTPSSR  435 (860)
Q Consensus       362 ~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg~i~~wd~~~~~~~~~~~~~~~~  435 (860)
                      .+|+.+.. +.|+.+++.....     ...+......+.++++++++..|+ +-..++.|..+++....... +......
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~-~~~~~~~   79 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT-IIRQDLG   79 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE-EECTTCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE-EEECCCC
Confidence            34555544 4788888765432     112222234578999999765555 44457789999987654333 3222234


Q ss_pred             cEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeC---CCcEEEEEccCCcce
Q 038577          436 QFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSW---DKTVRLWNVFEGKGS  512 (860)
Q Consensus       436 ~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~  512 (860)
                      ....+++++++..++++....+.|.++++..................++++|++..|..+..   .+.|..+++......
T Consensus        80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~  159 (267)
T 1npe_A           80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR  159 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred             CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE
Confidence            67899999988888777776669999998754333333322356789999997666655554   367888887654322


Q ss_pred             eEEcccCCCeEEEEEeeCCCEEEEEe-CCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEec
Q 038577          513 VESFPHTHDVLTVVYRPDGRQLACST-LDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSA  591 (860)
Q Consensus       513 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  591 (860)
                      ............++++|++..|+.+. ..+.|.++|+........+...                     .....++.. 
T Consensus       160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---------------------~~P~gi~~d-  217 (267)
T 1npe_A          160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---------------------QYPFAVTSY-  217 (267)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---------------------CSEEEEEEE-
T ss_pred             EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC---------------------CCceEEEEe-
Confidence            21213335678999999887776665 4578999999754433322211                     124566654 


Q ss_pred             CCCEEEEecCCCeEEEEECCCceEEEEEeec
Q 038577          592 DGSYILAGGSSKYICMYDVADQVLLRRFQIT  622 (860)
Q Consensus       592 ~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~  622 (860)
                      ++..+++....+.|.++|..+++.+..+...
T Consensus       218 ~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g  248 (267)
T 1npe_A          218 GKNLYYTDWKTNSVIAMDLAISKEMDTFHPH  248 (267)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEEEECCS
T ss_pred             CCEEEEEECCCCeEEEEeCCCCCceEEEccc
Confidence            3444444446689999999999998877643

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.19  E-value=7.7e-12  Score=129.93  Aligned_cols=191  Identities=15%  Similarity=0.119  Sum_probs=112.6

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEE-
Q 038577          360 DSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFV-  438 (860)
Q Consensus       360 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~-  438 (860)
                      ++..+++++.||.|+.||..+|+.+..+..  +.+.+..+..++..+++++.||.++.||..+++....+.......+. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            567899999999999999999999988875  45555555667777888889999999999888876555432111110 


Q ss_pred             EEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEccc
Q 038577          439 SLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPH  518 (860)
Q Consensus       439 ~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  518 (860)
                      +..+. .+..+++++.++ .++.||..+|+.+..+..+.    ...++|++..+++++.|+.|+.||..+++........
T Consensus        86 sp~~~-~~~~v~~g~~dg-~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~  159 (369)
T 2hz6_A           86 SPCRS-SDGILYMGKKQD-IWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF  159 (369)
T ss_dssp             CSCC------CCCCEEEE-EEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE
T ss_pred             CceEe-cCCEEEEEeCCC-EEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc
Confidence            00111 345666777777 89999999999988776554    2456678889999999999999999998865444321


Q ss_pred             CCCeEEEEEeeCC---CEEEEEeCCCeEEEEeCCCCceeEEEecc
Q 038577          519 THDVLTVVYRPDG---RQLACSTLDGQIHFWDPLNGELMYTIEGR  560 (860)
Q Consensus       519 ~~~v~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  560 (860)
                      .  ....+++++.   ..+++++.||.++.||..+|+.+......
T Consensus       160 ~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~  202 (369)
T 2hz6_A          160 D--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA  202 (369)
T ss_dssp             E--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS
T ss_pred             c--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC
Confidence            1  1223333332   56778889999999999999998877643

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.19  E-value=6e-09  Score=116.92  Aligned_cols=280  Identities=13%  Similarity=0.134  Sum_probs=189.7

Q ss_pred             CCEEEEEEccCCcEEEEEccCceEEEEecCcccC----------e-EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 038577          318 GNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFD----------V-NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVT  386 (860)
Q Consensus       318 ~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~----------v-~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  386 (860)
                      +..+++++.+ +.|..+|..+++.+.++......          + ..+++  .+..+++++.|+.|..+|..+|+.+..
T Consensus        66 ~g~vyv~~~~-~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~  142 (668)
T 1kv9_A           66 DGVIYTSMSW-SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWS  142 (668)
T ss_dssp             TTEEEEEEGG-GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCC-CeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeee
Confidence            4555555554 88999999999998887533210          0 11222  355788889999999999999999887


Q ss_pred             eecCC----CceEE-EEEeeCCCEEEEEeC------CCcEEEEEccccceeeEeeCCC--C-------------------
Q 038577          387 FTEHT----NAVTA-LHFMANNHSLLSASL------DGTVRAWDLFRYRNFRTFTTPS--S-------------------  434 (860)
Q Consensus       387 ~~~~~----~~v~~-i~~~~~~~~l~s~~~------dg~i~~wd~~~~~~~~~~~~~~--~-------------------  434 (860)
                      +....    ..+.+ ..+ .++ .++.+..      +|.|..+|..+++.+..+....  .                   
T Consensus       143 ~~~~~~~~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~  220 (668)
T 1kv9_A          143 QQTTDPAKPYSITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD  220 (668)
T ss_dssp             EECSCTTSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred             eccCCCCCcceecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence            75421    11111 111 134 4554433      5899999999999988776421  0                   


Q ss_pred             ---------CcEEEEEECCCCCEEEEEecCCC------------------eEEEEECCCCceEEEecC--cc-------c
Q 038577          435 ---------RQFVSLASDQSGEVICAGTLDSF------------------EIFVWSMKTGRLLDILSG--HE-------G  478 (860)
Q Consensus       435 ---------~~~~~~~~~~~~~~l~~~~~~~~------------------~i~v~d~~~~~~~~~~~~--h~-------~  478 (860)
                               .....+++++++..++++..++.                  .|..+|.++|+.+..++.  |.       .
T Consensus       221 ~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~  300 (668)
T 1kv9_A          221 QYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQ  300 (668)
T ss_dssp             CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred             ceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCC
Confidence                     01124688888888888876641                  499999999999887764  22       2


Q ss_pred             CeEEEEEcCCCC---EEEEEeCCCcEEEEEccCCcceeEEcccC------------CC----------------------
Q 038577          479 PVHGLVFSPTNA---TLASSSWDKTVRLWNVFEGKGSVESFPHT------------HD----------------------  521 (860)
Q Consensus       479 ~v~~l~~s~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------~~----------------------  521 (860)
                      +.....+..+|+   .++.++.+|.++++|..+++.+.......            .+                      
T Consensus       301 ~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~  380 (668)
T 1kv9_A          301 QITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGA  380 (668)
T ss_dssp             CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCS
T ss_pred             CcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccc
Confidence            333233334665   68889999999999999998653221110            00                      


Q ss_pred             --eEEEEEeeCCCEEEEEe------------------------------------CCCeEEEEeCCCCceeEEEeccccc
Q 038577          522 --VLTVVYRPDGRQLACST------------------------------------LDGQIHFWDPLNGELMYTIEGRRDI  563 (860)
Q Consensus       522 --v~~~~~s~~~~~l~~~~------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~  563 (860)
                        -..++++|+..++++..                                    .+|.|..||+.+|+.+...+.... 
T Consensus       381 ~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~-  459 (668)
T 1kv9_A          381 HNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH-  459 (668)
T ss_dssp             SCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS-
T ss_pred             cCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCC-
Confidence              01267888877766521                                    237899999999999888765432 


Q ss_pred             CCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeecc
Q 038577          564 SGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITH  623 (860)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~  623 (860)
                                          .....+...|.++++++.||.++.||..+|+.+.++....
T Consensus       460 --------------------~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~  499 (668)
T 1kv9_A          460 --------------------WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQS  499 (668)
T ss_dssp             --------------------CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             --------------------CcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCC
Confidence                                2333455578899999999999999999999999887653

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.19  E-value=1.1e-08  Score=97.87  Aligned_cols=219  Identities=12%  Similarity=-0.015  Sum_probs=150.5

Q ss_pred             eeEEEeecCCC--ceEEEEEeeCCCEEEEEeC--CCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCC
Q 038577          382 FCFVTFTEHTN--AVTALHFMANNHSLLSASL--DGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSF  457 (860)
Q Consensus       382 ~~~~~~~~~~~--~v~~i~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  457 (860)
                      +.+.++. |..  ....+.|++++..+++.+.  ++.|.++|+.+++....+..+.......++++  +..++++....+
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~   86 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN   86 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred             eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence            3445553 443  3689999998755555553  57999999999999998886654444455554  667777777767


Q ss_pred             eEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccC-----CCeEEEEEeeCCC
Q 038577          458 EIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHT-----HDVLTVVYRPDGR  532 (860)
Q Consensus       458 ~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~s~~~~  532 (860)
                      .+.++|..+++.+..+.....  ....+++||+.++++..++.|.++|..+.+....+....     ..++.+.|. +|+
T Consensus        87 ~v~viD~~t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~  163 (266)
T 2iwa_A           87 IGFIYDRRTLSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE  163 (266)
T ss_dssp             EEEEEETTTTEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEEEEECCCCcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE
Confidence            999999999999988863211  124466688877777778999999999887555544221     236788888 776


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEE-EEecCCCeEEEEECC
Q 038577          533 QLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYI-LAGGSSKYICMYDVA  611 (860)
Q Consensus       533 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l-~~~~~dg~v~vwd~~  611 (860)
                      ..+....++.|.+.|+.+++.+..+........       ..............++|+|+++.| +++...+.|.+.++.
T Consensus       164 lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~-------~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~  236 (266)
T 2iwa_A          164 VWANIWQTDCIARISAKDGTLLGWILLPNLRKK-------LIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH  236 (266)
T ss_dssp             EEEEETTSSEEEEEETTTCCEEEEEECHHHHHH-------HHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             EEEecCCCCeEEEEECCCCcEEEEEECCCcccc-------cccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence            555555678999999999999999875311000       000000011247999999998755 555577888888875


Q ss_pred             Cc
Q 038577          612 DQ  613 (860)
Q Consensus       612 ~~  613 (860)
                      ..
T Consensus       237 ~~  238 (266)
T 2iwa_A          237 LV  238 (266)
T ss_dssp             EC
T ss_pred             cc
Confidence            53

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.14  E-value=2.7e-08  Score=109.15  Aligned_cols=280  Identities=13%  Similarity=0.077  Sum_probs=182.9

Q ss_pred             CCEEEEEEc-CCeEEEEEC-CCceeEEEEeecCce-e----------EEEEEeeCCCEEEEEEccCCcEEEEEccCceEE
Q 038577          276 LDMVVVGFS-NGVFGLYQM-PDFVCIHLLSISREK-I----------TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYI  342 (860)
Q Consensus       276 ~~~l~~~~~-~g~i~~~~~-~~~~~~~~~~~~~~~-i----------~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~  342 (860)
                      +..+++++. ++.+.-+|. .+++.+-........ +          ..++.  .+..+++++. ++.+..+|..+++.+
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~-dg~l~alD~~tG~~~  138 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQA-NGHLLALDAKTGKIN  138 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT-TSEEEEEETTTCCEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeC-CCEEEEEECCCCCEE
Confidence            556777777 899999999 899998776544321 0          11222  3556666654 499999999999988


Q ss_pred             EEecCcc--c--CeEE-EEEcCCCCEEEEEeC------CCcEEEEECCCCeeEEEeecCCCc------------------
Q 038577          343 LKQQGHY--F--DVNC-LAYSPDSQLLATGAD------DNKVKVWTVSSGFCFVTFTEHTNA------------------  393 (860)
Q Consensus       343 ~~~~~~~--~--~v~~-~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~------------------  393 (860)
                      .+.....  .  .+.+ .... ++ .+++++.      ++.|..+|..+|+.+..+......                  
T Consensus       139 W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~  216 (571)
T 2ad6_A          139 WEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQ  216 (571)
T ss_dssp             EEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred             EEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccc
Confidence            7764321  0  1111 1111 34 5666655      789999999999998776532211                  


Q ss_pred             -------------------e-EEEEEeeCCCEEEEEeCC----------------CcEEEEEccccceeeEeeCCCC---
Q 038577          394 -------------------V-TALHFMANNHSLLSASLD----------------GTVRAWDLFRYRNFRTFTTPSS---  434 (860)
Q Consensus       394 -------------------v-~~i~~~~~~~~l~s~~~d----------------g~i~~wd~~~~~~~~~~~~~~~---  434 (860)
                                         + ..+++.++...++.+..+                +.|..+|..+++....+.....   
T Consensus       217 ~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~  296 (571)
T 2ad6_A          217 FGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEW  296 (571)
T ss_dssp             SSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSS
T ss_pred             cccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccc
Confidence                               0 135566665666665532                2599999999998887765321   


Q ss_pred             -----CcEEEEEECCCCC---EEEEEecCCCeEEEEECCCCceEEEecCcc-------------cCe-------------
Q 038577          435 -----RQFVSLASDQSGE---VICAGTLDSFEIFVWSMKTGRLLDILSGHE-------------GPV-------------  480 (860)
Q Consensus       435 -----~~~~~~~~~~~~~---~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~-------------~~v-------------  480 (860)
                           .....+....+|+   .++.+..++ .++++|..+|+.+.......             .++             
T Consensus       297 d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G-~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~  375 (571)
T 2ad6_A          297 DFAGVNQMVLTDQPVNGKMTPLLSHIDRNG-ILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKG  375 (571)
T ss_dssp             CCCCCCCCEEEEEEETTEEEEEEEEECTTS-EEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCE
T ss_pred             ccccCCCCEEEecccCCcEEEEEEEeCCCc-EEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCc
Confidence                 1112222334674   566677776 99999999999887654221             111             


Q ss_pred             -------------EEEEEcCCCCEEEEEe-------------------------------------CCCcEEEEEccCCc
Q 038577          481 -------------HGLVFSPTNATLASSS-------------------------------------WDKTVRLWNVFEGK  510 (860)
Q Consensus       481 -------------~~l~~s~~~~~l~s~~-------------------------------------~dg~i~iwd~~~~~  510 (860)
                                   ..++++|+..+++...                                     .+|.|..||..+++
T Consensus       376 ~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~  455 (571)
T 2ad6_A          376 TNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGK  455 (571)
T ss_dssp             EEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCC
T ss_pred             eEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCC
Confidence                         2357888877776653                                     34789999999988


Q ss_pred             ceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccc
Q 038577          511 GSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRD  562 (860)
Q Consensus       511 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  562 (860)
                      ....... ...+....+...+..+++++.||.|+.||..+|+.+..++....
T Consensus       456 ~~W~~~~-~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~  506 (571)
T 2ad6_A          456 AKWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSG  506 (571)
T ss_dssp             EEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             EEEEecC-CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCC
Confidence            6555432 22333333444667888899999999999999999999876543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.10  E-value=5.4e-08  Score=106.33  Aligned_cols=282  Identities=9%  Similarity=0.032  Sum_probs=183.2

Q ss_pred             CCEEEEEEc-CCeEEEEEC-CCceeEEEEeecCce-----------eEEEEEeeCCCE----EEEEEccCCcEEEEEccC
Q 038577          276 LDMVVVGFS-NGVFGLYQM-PDFVCIHLLSISREK-----------ITTAVFNELGNW----LVFGCAKLGQLLVWEWRS  338 (860)
Q Consensus       276 ~~~l~~~~~-~g~i~~~~~-~~~~~~~~~~~~~~~-----------i~~~~~s~~~~~----l~~~~~~~g~i~v~d~~~  338 (860)
                      +..+++++. ++.+.-+|. .+++.+-........           ...++++|.+..    +++++. ++.|..+|..+
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~-dg~l~AlDa~T  140 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL-DGNVAALNAET  140 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-TSEEEEEETTT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC-CCEEEEEECCC
Confidence            567777777 899999999 899998777654321           123455444444    666554 49999999999


Q ss_pred             ceEEEEecCccc----CeEE-EEEcCCCCEEEEEe------CCCcEEEEECCCCeeEEEeecCCCc--------------
Q 038577          339 ESYILKQQGHYF----DVNC-LAYSPDSQLLATGA------DDNKVKVWTVSSGFCFVTFTEHTNA--------------  393 (860)
Q Consensus       339 ~~~~~~~~~~~~----~v~~-~~~s~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~--------------  393 (860)
                      ++.+.+......    .+.+ ..+. ++ .+++++      .+|.|+.+|..+|+.+-.+......              
T Consensus       141 G~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~  218 (599)
T 1w6s_A          141 GETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP  218 (599)
T ss_dssp             CCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred             CCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence            998877643210    1111 1111 34 555555      3789999999999998776532211              


Q ss_pred             -----------------------e-EEEEEeeCCCEEEEEeCC----------------CcEEEEEccccceeeEeeCCC
Q 038577          394 -----------------------V-TALHFMANNHSLLSASLD----------------GTVRAWDLFRYRNFRTFTTPS  433 (860)
Q Consensus       394 -----------------------v-~~i~~~~~~~~l~s~~~d----------------g~i~~wd~~~~~~~~~~~~~~  433 (860)
                                             + ..+++.++...++.+..+                +.|..+|..+++....+....
T Consensus       219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~  298 (599)
T 1w6s_A          219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP  298 (599)
T ss_dssp             GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred             cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCC
Confidence                                   0 134566666677777655                379999999999888877643


Q ss_pred             CC--------cEEEEEEC-CCC---CEEEEEecCCCeEEEEECCCCceEEEecCcc-------------cCe--------
Q 038577          434 SR--------QFVSLASD-QSG---EVICAGTLDSFEIFVWSMKTGRLLDILSGHE-------------GPV--------  480 (860)
Q Consensus       434 ~~--------~~~~~~~~-~~~---~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~-------------~~v--------  480 (860)
                      ..        ...-+... .+|   ..++.++.++ .++++|.++|+++.......             .++        
T Consensus       299 ~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G-~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~  377 (599)
T 1w6s_A          299 HDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNG-IVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTR  377 (599)
T ss_dssp             TCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTS-EEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCC
T ss_pred             CccccccCCCccEEEeccccCCcEEEEEEEECCCc-EEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCC
Confidence            21        11112222 567   4566677776 99999999999887654211             111        


Q ss_pred             ------------------EEEEEcCCCCEEEEEe---------------------------------------CCCcEEE
Q 038577          481 ------------------HGLVFSPTNATLASSS---------------------------------------WDKTVRL  503 (860)
Q Consensus       481 ------------------~~l~~s~~~~~l~s~~---------------------------------------~dg~i~i  503 (860)
                                        ..++++|+..++++..                                       .+|.+..
T Consensus       378 ~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A  457 (599)
T 1w6s_A          378 MDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKA  457 (599)
T ss_dssp             TTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEE
T ss_pred             CCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEE
Confidence                              2356777766654421                                       3477888


Q ss_pred             EEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccc
Q 038577          504 WNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRD  562 (860)
Q Consensus       504 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  562 (860)
                      ||+.+++....... ..+...-.+...+.+++.++.||.++.||.++|+.+.+++....
T Consensus       458 ~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g  515 (599)
T 1w6s_A          458 YNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSG  515 (599)
T ss_dssp             ECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             EECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCC
Confidence            99988886554432 12222222334677888899999999999999999999876543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.10  E-value=1.8e-11  Score=127.05  Aligned_cols=189  Identities=12%  Similarity=0.051  Sum_probs=112.5

Q ss_pred             CCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccC-e
Q 038577          402 NNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGP-V  480 (860)
Q Consensus       402 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~-v  480 (860)
                      ++..+++++.||.+..||..+++....+.. .  .+.+..+..++..+++++.++ .++.||..+|+.+..+..+... +
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~--~~~s~p~~~~g~~~v~~s~dg-~l~a~d~~tG~~~w~~~~~~~~~~   83 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D--PVLQVPTHVEEPAFLPDPNDG-SLYTLGSKNNEGLTKLPFTIPELV   83 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C--CSCCCC-----CCEEECTTTC-CEEEC-----CCSEECSCCHHHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C--CceecceEcCCCEEEEeCCCC-EEEEEECCCCceeeeeeccCcccc
Confidence            466899999999999999999999888776 2  333444456677777777777 9999999999887666543211 1


Q ss_pred             E-EEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEec
Q 038577          481 H-GLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEG  559 (860)
Q Consensus       481 ~-~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  559 (860)
                      . +..+. ++..+++++.|+.++.||..+++.......+.    ...++|++..+++++.|+.|+.||..+|+.+..+..
T Consensus        84 ~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~  158 (369)
T 2hz6_A           84 QASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATY  158 (369)
T ss_dssp             TTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEE
T ss_pred             ccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEec
Confidence            0 01111 34567788889999999999998665544332    245667888999999999999999999998877654


Q ss_pred             ccccCCCccccccccccccCCCCcEEEEEEecCC---CEEEEecCCCeEEEEECCCceEEEEEee
Q 038577          560 RRDISGGRLMTDRRSAANSSSGKCFTTLCYSADG---SYILAGGSSKYICMYDVADQVLLRRFQI  621 (860)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g---~~l~~~~~dg~v~vwd~~~~~~~~~~~~  621 (860)
                      ...                      ...++++++   ..+++++.+|.|..||..+|+.+.++..
T Consensus       159 ~~~----------------------~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~  201 (369)
T 2hz6_A          159 FDY----------------------AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY  201 (369)
T ss_dssp             EEE----------------------CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred             ccc----------------------cCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence            321                      112233322   4566788899999999999998877663

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.09  E-value=1.4e-07  Score=103.41  Aligned_cols=282  Identities=12%  Similarity=0.115  Sum_probs=179.3

Q ss_pred             CCEEEEEEcCCeEEEEECCCceeEEEEeecCcee---------EEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEec
Q 038577          276 LDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKI---------TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQ  346 (860)
Q Consensus       276 ~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i---------~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~  346 (860)
                      +..+++++.++.+.-+|..+++.+-.+.......         ..+++  .+..+++++.+ +.|..+|.++++.+.+..
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~d-g~l~AlD~~TG~~~W~~~  144 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLD-ASVVALNKNTGKVVWKKK  144 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETT-TEEEEEESSSCCEEEEEE
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCC-CEEEEEECCCCCEEeeec
Confidence            4567777775569999999999987776543210         11222  35566666554 999999999999988764


Q ss_pred             Cccc----CeE-EEEEcC---CCC-EEEEEeC------CCcEEEEECCCCeeEEEeecCCCce-----------------
Q 038577          347 GHYF----DVN-CLAYSP---DSQ-LLATGAD------DNKVKVWTVSSGFCFVTFTEHTNAV-----------------  394 (860)
Q Consensus       347 ~~~~----~v~-~~~~s~---~~~-~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~v-----------------  394 (860)
                      ....    .+. ...+..   +|+ .+++++.      +|.|..+|..+|+.+-........+                 
T Consensus       145 ~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~  224 (582)
T 1flg_A          145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAP  224 (582)
T ss_dssp             CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCT
T ss_pred             CCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccc
Confidence            3221    111 111111   233 5666543      7899999999999887654321000                 


Q ss_pred             ------------------------EEEEEeeCCCEEEEEeC--------------------C----CcEEEEEcccccee
Q 038577          395 ------------------------TALHFMANNHSLLSASL--------------------D----GTVRAWDLFRYRNF  426 (860)
Q Consensus       395 ------------------------~~i~~~~~~~~l~s~~~--------------------d----g~i~~wd~~~~~~~  426 (860)
                                              ..+++.|+...++.+..                    |    +.|..+|..+++..
T Consensus       225 ~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~  304 (582)
T 1flg_A          225 SWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVK  304 (582)
T ss_dssp             TSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEE
T ss_pred             cCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEE
Confidence                                    12456666666666553                    2    57999999999998


Q ss_pred             eEeeCCCC--------CcEEEEEEC-CCCC---EEEEEecCCCeEEEEECCCCceEEEecCcc-------------cCe-
Q 038577          427 RTFTTPSS--------RQFVSLASD-QSGE---VICAGTLDSFEIFVWSMKTGRLLDILSGHE-------------GPV-  480 (860)
Q Consensus       427 ~~~~~~~~--------~~~~~~~~~-~~~~---~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~-------------~~v-  480 (860)
                      ..+.....        ....-+... .+|+   .++.++.++ .++++|..+|+++..+....             .++ 
T Consensus       305 W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G-~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~  383 (582)
T 1flg_A          305 WFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNG-FFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVE  383 (582)
T ss_dssp             EEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTS-EEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEE
T ss_pred             EEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCc-eEEEEECCCCCEecccccccCccccccccccCCCEeE
Confidence            88765321        111112222 5674   667777777 99999999999887654321             000 


Q ss_pred             -------------------------------EEEEEcCCCCEEEEEe---------------------------------
Q 038577          481 -------------------------------HGLVFSPTNATLASSS---------------------------------  496 (860)
Q Consensus       481 -------------------------------~~l~~s~~~~~l~s~~---------------------------------  496 (860)
                                                     ..++++|+..++++..                                 
T Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~  463 (582)
T 1flg_A          384 REGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDD  463 (582)
T ss_dssp             CTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSS
T ss_pred             ccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCC
Confidence                                           1346666655544432                                 


Q ss_pred             CCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccc
Q 038577          497 WDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRD  562 (860)
Q Consensus       497 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  562 (860)
                      .+|.|..||+.+++...+.... .++..-.....+.++++++.||.++.||.++|+.+..++....
T Consensus       464 ~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g  528 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG  528 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             CcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCC
Confidence            2578999999999865554322 2222222333577888899999999999999999999887554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.09  E-value=4.6e-08  Score=106.86  Aligned_cols=282  Identities=14%  Similarity=0.106  Sum_probs=184.8

Q ss_pred             CCEEEEEEccCCcEEEEEc-cCceEEEEecCccc-----------CeEEEEEcCCCCE----EEEEeCCCcEEEEECCCC
Q 038577          318 GNWLVFGCAKLGQLLVWEW-RSESYILKQQGHYF-----------DVNCLAYSPDSQL----LATGADDNKVKVWTVSSG  381 (860)
Q Consensus       318 ~~~l~~~~~~~g~i~v~d~-~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~----l~~~~~dg~i~iwd~~~~  381 (860)
                      +..+++++..++.|.-+|. .+++.+.+......           ....++++|.+..    +++++.|+.+..+|..+|
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            4455555441488999999 89998887743221           0123456443444    888889999999999999


Q ss_pred             eeEEEeecCCC----ceEE-EEEeeCCCEEEEEe------CCCcEEEEEccccceeeEeeCCCCCc--------------
Q 038577          382 FCFVTFTEHTN----AVTA-LHFMANNHSLLSAS------LDGTVRAWDLFRYRNFRTFTTPSSRQ--------------  436 (860)
Q Consensus       382 ~~~~~~~~~~~----~v~~-i~~~~~~~~l~s~~------~dg~i~~wd~~~~~~~~~~~~~~~~~--------------  436 (860)
                      +.+-.......    .+.+ ..+ .++ .+++++      .+|.|+.+|..+++.+..+.......              
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~  219 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH  219 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             CEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence            98877643220    1211 111 244 455544      37999999999999887776543210              


Q ss_pred             -----------------------EEEEEECCCCCEEEEEecCC---------------CeEEEEECCCCceEEEecCcc-
Q 038577          437 -----------------------FVSLASDQSGEVICAGTLDS---------------FEIFVWSMKTGRLLDILSGHE-  477 (860)
Q Consensus       437 -----------------------~~~~~~~~~~~~l~~~~~~~---------------~~i~v~d~~~~~~~~~~~~h~-  477 (860)
                                             ...+++++....++++..+.               ..|.-+|.++|+.+..++... 
T Consensus       220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~  299 (599)
T 1w6s_A          220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH  299 (599)
T ss_dssp             GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred             ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence                                   11356777888888877652               379999999999987775422 


Q ss_pred             ---------cCeEEEEEc-CCC---CEEEEEeCCCcEEEEEccCCcceeEEcccC-------------CCe---------
Q 038577          478 ---------GPVHGLVFS-PTN---ATLASSSWDKTVRLWNVFEGKGSVESFPHT-------------HDV---------  522 (860)
Q Consensus       478 ---------~~v~~l~~s-~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------~~v---------  522 (860)
                               .++. +... .+|   +.++.++.+|.++++|..+++.+.......             .++         
T Consensus       300 d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~  378 (599)
T 1w6s_A          300 DEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRM  378 (599)
T ss_dssp             CSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCT
T ss_pred             ccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCC
Confidence                     1221 2222 467   467788899999999999998665433110             111         


Q ss_pred             -----------------EEEEEeeCCCEEEEEe---------------------------------------CCCeEEEE
Q 038577          523 -----------------LTVVYRPDGRQLACST---------------------------------------LDGQIHFW  546 (860)
Q Consensus       523 -----------------~~~~~s~~~~~l~~~~---------------------------------------~dg~i~iw  546 (860)
                                       ..++++|+..++++..                                       ..|.|..|
T Consensus       379 ~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~  458 (599)
T 1w6s_A          379 DHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAY  458 (599)
T ss_dssp             TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEE
T ss_pred             CCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEE
Confidence                             2456777776665532                                       34778889


Q ss_pred             eCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeecc
Q 038577          547 DPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITH  623 (860)
Q Consensus       547 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~  623 (860)
                      |+.+|+.+...+....                     ...-.+...+..++.++.||.++.||.++|+.+.+++...
T Consensus       459 D~~tG~~~W~~~~~~~---------------------~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~  514 (599)
T 1w6s_A          459 NAITGDYKWEKMERFA---------------------VWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS  514 (599)
T ss_dssp             CTTTCCEEEEEEESSC---------------------CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             ECCCCCEEeEecCCCC---------------------ccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCC
Confidence            9999988887754321                     1111123357788889999999999999999999887543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.09  E-value=3.3e-08  Score=108.40  Aligned_cols=279  Identities=16%  Similarity=0.099  Sum_probs=183.7

Q ss_pred             CCEEEEEEccCCcEEEEEc-cCceEEEEecCccc-C----------eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 038577          318 GNWLVFGCAKLGQLLVWEW-RSESYILKQQGHYF-D----------VNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFV  385 (860)
Q Consensus       318 ~~~l~~~~~~~g~i~v~d~-~~~~~~~~~~~~~~-~----------v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  385 (860)
                      +..+++++..++.|.-+|. .+++.+.+...... .          -..+++  .+..+++++.|+.+..+|..+|+.+.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            4445555442488999999 89988887643221 0          011233  35578888889999999999999887


Q ss_pred             EeecCCC----ceEE-EEEeeCCCEEEEEeC------CCcEEEEEccccceeeEeeCCCCC-------------------
Q 038577          386 TFTEHTN----AVTA-LHFMANNHSLLSASL------DGTVRAWDLFRYRNFRTFTTPSSR-------------------  435 (860)
Q Consensus       386 ~~~~~~~----~v~~-i~~~~~~~~l~s~~~------dg~i~~wd~~~~~~~~~~~~~~~~-------------------  435 (860)
                      .......    .+.+ ..+ .++ .++.++.      ++.|..+|..+++.+..+......                   
T Consensus       140 ~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~  217 (571)
T 2ad6_A          140 EVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF  217 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred             EecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence            7653220    1211 111 144 5555554      789999999999988777643211                   


Q ss_pred             ------------------cEEEEEECCCCCEEEEEecCC---------------CeEEEEECCCCceEEEecC--cc---
Q 038577          436 ------------------QFVSLASDQSGEVICAGTLDS---------------FEIFVWSMKTGRLLDILSG--HE---  477 (860)
Q Consensus       436 ------------------~~~~~~~~~~~~~l~~~~~~~---------------~~i~v~d~~~~~~~~~~~~--h~---  477 (860)
                                        ....++++++...++++..+.               +.|..+|.++|+.+..++.  |.   
T Consensus       218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d  297 (571)
T 2ad6_A          218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD  297 (571)
T ss_dssp             SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred             ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence                              002356777777777766421               2699999999999877753  21   


Q ss_pred             -----cCeEEEEEcCCCC---EEEEEeCCCcEEEEEccCCcceeEEcccC-------------CCe--------------
Q 038577          478 -----GPVHGLVFSPTNA---TLASSSWDKTVRLWNVFEGKGSVESFPHT-------------HDV--------------  522 (860)
Q Consensus       478 -----~~v~~l~~s~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------~~v--------------  522 (860)
                           .++. +...++|+   .++.++.+|.++++|..+++.+.......             .++              
T Consensus       298 ~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~  376 (571)
T 2ad6_A          298 FAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGT  376 (571)
T ss_dssp             CCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEE
T ss_pred             cccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCce
Confidence                 2221 22224674   57788889999999999998655433111             111              


Q ss_pred             ------------EEEEEeeCCCEEEEEe-------------------------------------CCCeEEEEeCCCCce
Q 038577          523 ------------LTVVYRPDGRQLACST-------------------------------------LDGQIHFWDPLNGEL  553 (860)
Q Consensus       523 ------------~~~~~s~~~~~l~~~~-------------------------------------~dg~i~iwd~~~~~~  553 (860)
                                  ..++++|+..++++..                                     .+|.|..||+.+++.
T Consensus       377 ~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~  456 (571)
T 2ad6_A          377 NICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA  456 (571)
T ss_dssp             EESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE
T ss_pred             EECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE
Confidence                        2467888888777764                                     347899999999999


Q ss_pred             eEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeec
Q 038577          554 MYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQIT  622 (860)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~  622 (860)
                      +.+++....                     +....+...+..++.++.||.|+.||..+|+.+.++...
T Consensus       457 ~W~~~~~~~---------------------~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~  504 (571)
T 2ad6_A          457 KWTKWEKFA---------------------AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP  504 (571)
T ss_dssp             EEEEEESSC---------------------CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             EEEecCCCC---------------------ccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence            888765432                     122223345677888999999999999999999888753

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.04  E-value=9.5e-08  Score=89.95  Aligned_cols=203  Identities=13%  Similarity=0.130  Sum_probs=140.8

Q ss_pred             eEEEeecCCCc--eEEEEEeeCCCEEEEEeCCC--cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCe
Q 038577          383 CFVTFTEHTNA--VTALHFMANNHSLLSASLDG--TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFE  458 (860)
Q Consensus       383 ~~~~~~~~~~~--v~~i~~~~~~~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  458 (860)
                      .+.++ .|...  ...+.|+ ++..+.+.+.+|  .|+.+|+.+++..+.+..+....-..+++  ++..|......++.
T Consensus        33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~~~  108 (262)
T 3nol_A           33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKNGL  108 (262)
T ss_dssp             EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSE
T ss_pred             EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeCCE
Confidence            44455 45544  3788888 676777777776  89999999999999888765433333444  46677777776669


Q ss_pred             EEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEccc--C---CCeEEEEEeeCCCE
Q 038577          459 IFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPH--T---HDVLTVVYRPDGRQ  533 (860)
Q Consensus       459 i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~---~~v~~~~~s~~~~~  533 (860)
                      +.+||..+.+.+.++....   ....+++|++.|+.+..++.|.++|..+.+....+...  .   ..++.+.|. +|+.
T Consensus       109 v~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~l  184 (262)
T 3nol_A          109 GFVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEI  184 (262)
T ss_dssp             EEEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             EEEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEE
Confidence            9999999999999887432   22344457877777766788999999988765554421  1   334567776 7766


Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecC
Q 038577          534 LACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGS  601 (860)
Q Consensus       534 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~  601 (860)
                      .+..-.+..|.+.|..+|+.+..+....-.....        .........+.+||+|+++.|++.+.
T Consensus       185 yan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~--------~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          185 FANVWQTNKIVRIDPETGKVTGIIDLNGILAEAG--------PLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEETTSSEEEEECTTTCBEEEEEECTTGGGGSC--------SCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEEEccCCeEEEEECCCCcEEEEEECCcCccccc--------cccCcCCceEEEEEcCCCCEEEEECC
Confidence            6555568899999999999999987643110000        00112235799999999887776654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.03  E-value=1.2e-07  Score=90.74  Aligned_cols=197  Identities=9%  Similarity=-0.045  Sum_probs=147.6

Q ss_pred             ceEEEEecCCCCEEEEEEc---CCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEE
Q 038577          266 KVTACDYHRGLDMVVVGFS---NGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYI  342 (860)
Q Consensus       266 ~v~~~~~~~~~~~l~~~~~---~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~  342 (860)
                      ....+.++|++ .|++++.   ++.|.++|+.+++.+..+..... .....+..+++.+..+...++.+.++|..+.+.+
T Consensus        22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-YFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-cceEEEEEeCCEEEEEEecCCEEEEEECCCCcEE
Confidence            46889999986 5555543   58999999999999988775443 2223344457888888888899999999999988


Q ss_pred             EEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCC-----CceEEEEEeeCCCEEEEEeCCCcEEE
Q 038577          343 LKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHT-----NAVTALHFMANNHSLLSASLDGTVRA  417 (860)
Q Consensus       343 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~i~~~~~~~~l~s~~~dg~i~~  417 (860)
                      .++......  ...+++||+.++++..++.|.++|..+.+.+..+.-..     ..+..+.|. ++..++....++.|.+
T Consensus       100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~v  176 (266)
T 2iwa_A          100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIAR  176 (266)
T ss_dssp             EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEE
T ss_pred             EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEE
Confidence            887533111  23456688877777778999999999988887775321     236788887 7755555556789999


Q ss_pred             EEccccceeeEeeCCC------------CCcEEEEEECCCCCEEEEEecCCCeEEEEECCCC
Q 038577          418 WDLFRYRNFRTFTTPS------------SRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTG  467 (860)
Q Consensus       418 wd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~  467 (860)
                      .|..+++....+..+.            ......++++|+++.+++++.....++..++...
T Consensus       177 ID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          177 ISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            9999999988887531            1356899999999988888776668888887654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.00  E-value=2.6e-07  Score=101.31  Aligned_cols=280  Identities=13%  Similarity=0.097  Sum_probs=179.8

Q ss_pred             CCEEEEEEccCCcEEEEEccCceEEEEecCcccC---------eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEee
Q 038577          318 GNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFD---------VNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFT  388 (860)
Q Consensus       318 ~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~---------v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  388 (860)
                      +..+++++.. +.|..+|..+++.+.++......         ...+++  .+..+++++.++.+..+|..+|+.+-...
T Consensus        68 ~g~vyv~~~~-~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~  144 (582)
T 1flg_A           68 DGVIYVTASY-SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKK  144 (582)
T ss_dssp             TTEEEEEETT-TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred             CCEEEEEcCC-CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeec
Confidence            3445555543 34888999999988877543211         012222  34578888899999999999999987765


Q ss_pred             cCCC----ceE-EEEEeeC---CC-EEEEEe------CCCcEEEEEccccceeeEeeCCCC-------------------
Q 038577          389 EHTN----AVT-ALHFMAN---NH-SLLSAS------LDGTVRAWDLFRYRNFRTFTTPSS-------------------  434 (860)
Q Consensus       389 ~~~~----~v~-~i~~~~~---~~-~l~s~~------~dg~i~~wd~~~~~~~~~~~~~~~-------------------  434 (860)
                      ....    .+. ...+..+   ++ .+++++      .++.|..+|..+++.+........                   
T Consensus       145 ~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~  224 (582)
T 1flg_A          145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAP  224 (582)
T ss_dssp             CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCT
T ss_pred             CCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccc
Confidence            4321    111 1112222   33 455554      378999999999988776543210                   


Q ss_pred             ---------------------CcEEEEEECCCCCEEEEEecC------------C-----------CeEEEEECCCCceE
Q 038577          435 ---------------------RQFVSLASDQSGEVICAGTLD------------S-----------FEIFVWSMKTGRLL  470 (860)
Q Consensus       435 ---------------------~~~~~~~~~~~~~~l~~~~~~------------~-----------~~i~v~d~~~~~~~  470 (860)
                                           .....++++|....++++..+            +           +.|.-+|..+|+.+
T Consensus       225 ~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~  304 (582)
T 1flg_A          225 SWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVK  304 (582)
T ss_dssp             TSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEE
T ss_pred             cCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEE
Confidence                                 001235677777888877631            1           38999999999998


Q ss_pred             EEecC--cc--------cCeEEEEEc-CCCC---EEEEEeCCCcEEEEEccCCcceeEEcccC-------------CC--
Q 038577          471 DILSG--HE--------GPVHGLVFS-PTNA---TLASSSWDKTVRLWNVFEGKGSVESFPHT-------------HD--  521 (860)
Q Consensus       471 ~~~~~--h~--------~~v~~l~~s-~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------~~--  521 (860)
                      ..++.  |.        .++. +... .+|+   .++.++.+|.++++|..+++.+.......             .+  
T Consensus       305 W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~  383 (582)
T 1flg_A          305 WFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVE  383 (582)
T ss_dssp             EEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEE
T ss_pred             EEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeE
Confidence            87753  32        1221 1221 4674   78889999999999999988654433211             00  


Q ss_pred             ------------------------------eEEEEEeeCCCEEEEEe---------------------------------
Q 038577          522 ------------------------------VLTVVYRPDGRQLACST---------------------------------  538 (860)
Q Consensus       522 ------------------------------v~~~~~s~~~~~l~~~~---------------------------------  538 (860)
                                                    -..++++|+..++++..                                 
T Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~  463 (582)
T 1flg_A          384 REGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDD  463 (582)
T ss_dssp             CTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSS
T ss_pred             ccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCC
Confidence                                          01346677655555533                                 


Q ss_pred             CCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEE
Q 038577          539 LDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRR  618 (860)
Q Consensus       539 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~  618 (860)
                      .+|.|..||+.+|+.+...+.....                     ..-.....+..++.++.||.++.||.++|+.+.+
T Consensus       464 ~~G~l~A~D~~tG~~~W~~~~~~~~---------------------~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~  522 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEHKEHLPL---------------------WAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWK  522 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEESSCC---------------------CSCCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CcceEEEEECCCCCEEEEecCCCCC---------------------cccceEeCCCEEEEECCCCcEEEEECCCCCEEEE
Confidence            2578999999999998887654321                     1111223467888899999999999999999998


Q ss_pred             Eeec
Q 038577          619 FQIT  622 (860)
Q Consensus       619 ~~~~  622 (860)
                      ++..
T Consensus       523 ~~~~  526 (582)
T 1flg_A          523 FQTG  526 (582)
T ss_dssp             EECS
T ss_pred             ecCC
Confidence            8753

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.99  E-value=0.00019  Score=84.67  Aligned_cols=427  Identities=10%  Similarity=0.057  Sum_probs=232.5

Q ss_pred             CcEEEEEcccCeEEEEeec--CCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcC
Q 038577           74 QRCHFINLHCHVVLHRVRF--KYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSP  151 (860)
Q Consensus        74 ~~i~vwd~~~~~~~~~~~~--~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~  151 (860)
                      ..|++.+...+..+..+..  ...|...+.+.  .+++.+.++.+.++.+..++.     ...... .-...|.|+++.|
T Consensus       492 ~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~g~~l~~fel~~~~L-----~~~~~~-~l~~evscl~i~~  563 (1158)
T 3ei3_A          492 ASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAVGRALYYLQIHPQEL-----RQISHT-EMEHEVACLDITP  563 (1158)
T ss_dssp             SCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEETTEEEEEEEETTEE-----EEEEEE-ECSSCEEEEECCC
T ss_pred             CEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEECCEEEEEEeeCCce-----eeeccc-CCCCceEEEEeec
Confidence            3566777665556666653  34677777663  466666678888888775421     112222 2356799999986


Q ss_pred             C------CCeEEEeec-CCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeec
Q 038577          152 D------SNYLLVGSK-DLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFS  224 (860)
Q Consensus       152 d------~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~  224 (860)
                      .      +++++.|.. |++|+|+++... +.   .....+. ......++.+..-+.   ..+|..+-.||.+..+.++
T Consensus       564 ~~~~~~~s~~~aVg~~~d~tv~I~sL~~l-~~---~~~~~L~-~~~~p~si~l~~~~~---~~~L~igl~dG~l~~~~~d  635 (1158)
T 3ei3_A          564 LGDSNGLSPLCAIGLWTDISARILKLPSF-EL---LHKEMLG-GEIIPRSILMTTFES---SHYLLCALGDGALFYFGLN  635 (1158)
T ss_dssp             CSSSTTCCSEEEEEETTTTEEEEEETTTC-CE---EEEEECC-SSCCEEEEEEEEETT---EEEEEEEETTSEEEEEEEC
T ss_pred             CCCCcccccEEEEEECCCCEEEEEECCCC-Ce---EEEEECC-CCCCCcEEEEEEeCC---CcEEEEEeCCCeEEEEEEc
Confidence            3      478999986 999999999764 22   1111222 123444544432111   1288999999998877765


Q ss_pred             CCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEee
Q 038577          225 GNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSI  304 (860)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~  304 (860)
                      .....                   +..   . +..+-+ ..++.-..+...+..-+.+..+....+|... +... ....
T Consensus       636 ~~tg~-------------------l~d---~-r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~-~s~l  689 (1158)
T 3ei3_A          636 IETGL-------------------LSD---R-KKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLV-FSNV  689 (1158)
T ss_dssp             TTTCC-------------------EEE---E-EEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEE-EEEB
T ss_pred             CCCCc-------------------ccc---c-eeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceE-Eecc
Confidence            42110                   000   0 111111 1233333333334433444444444445432 2211 1122


Q ss_pred             cCcee-EEEEEeeC--CCEEEEEEccCCcEEEEEccCce--EEEEecCcccCeEEEEEcCCCCEEEEEeCC---------
Q 038577          305 SREKI-TTAVFNEL--GNWLVFGCAKLGQLLVWEWRSES--YILKQQGHYFDVNCLAYSPDSQLLATGADD---------  370 (860)
Q Consensus       305 ~~~~i-~~~~~s~~--~~~l~~~~~~~g~i~v~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------  370 (860)
                      ....+ ....|+..  .+-++....  +.++|..+....  .+.+++ -...+..++++|+.+.++++..+         
T Consensus       690 ~~~~v~~~~~F~se~~~~g~v~~~~--~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~  766 (1158)
T 3ei3_A          690 NLKEVNYMCPLNSDGYPDSLALANN--STLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGG  766 (1158)
T ss_dssp             SSSCCCEEEEECCSSSTTEEEEECS--SCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSS
T ss_pred             ChHHhceEeccCcccCCCcEEEEcC--CceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccc
Confidence            22223 23334332  244554433  557777664321  222222 23456777777776655443311         


Q ss_pred             ----------------------------------------CcEEEEECCCCeeEEEeec-CCCceEEEEEe---eC-CCE
Q 038577          371 ----------------------------------------NKVKVWTVSSGFCFVTFTE-HTNAVTALHFM---AN-NHS  405 (860)
Q Consensus       371 ----------------------------------------g~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~---~~-~~~  405 (860)
                                                              +.|++.|..+.+.+..+.- ....+.+++..   .+ ..+
T Consensus       767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~  846 (1158)
T 3ei3_A          767 TTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTY  846 (1158)
T ss_dssp             EEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCE
T ss_pred             cchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEE
Confidence                                                    2366777766666554432 23345555542   22 357


Q ss_pred             EEEEe----------CCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC
Q 038577          406 LLSAS----------LDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG  475 (860)
Q Consensus       406 l~s~~----------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~  475 (860)
                      ++.|.          ..|.|.+|++...+.......+....+.+++-- +| +|+++-..  .+++|++...+.+..-..
T Consensus       847 lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~ig~--~l~vy~l~~~~~L~~~~~  922 (1158)
T 3ei3_A          847 FIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASINS--TVRLYEWTTEKELRTECN  922 (1158)
T ss_dssp             EEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEETT--EEEEEEECTTSCEEEEEE
T ss_pred             EEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEcCC--EEEEEECCCCceEEEEee
Confidence            77765          347899999975544444444445567776643 24 55555433  899999987654441111


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc---ccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCC
Q 038577          476 HEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF---PHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLN  550 (860)
Q Consensus       476 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  550 (860)
                      +-..|..+.....+.+++.|..-..|.++..+.........   .....++++.|-.++ .++.++.+|.+.++..+.
T Consensus       923 ~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          923 HYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             ECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred             ccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence            12223333333357889999887778776654333222222   366778999887654 677899999999987654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.91  E-value=1.6e-06  Score=87.29  Aligned_cols=238  Identities=12%  Similarity=0.057  Sum_probs=145.1

Q ss_pred             eEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCC--cEEE
Q 038577          340 SYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDG--TVRA  417 (860)
Q Consensus       340 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg--~i~~  417 (860)
                      +.+..+... .....++|+++|+.+++-..++.|..||.... ....+ .....+..+++.++++.+++.....  .|..
T Consensus        23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~~   99 (306)
T 2p4o_A           23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVS   99 (306)
T ss_dssp             EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE-eCCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence            334444322 45778999999987777667899999997653 33333 2345788999999998666554332  4666


Q ss_pred             EEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCce-EEEec---------CcccCeEEEEEcC
Q 038577          418 WDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRL-LDILS---------GHEGPVHGLVFSP  487 (860)
Q Consensus       418 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~-~~~~~---------~h~~~v~~l~~s~  487 (860)
                      ++..+++.......+.......++..+++..+++...++ .|+.+|..+++. +....         +.......+  +|
T Consensus       100 ~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g-~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~  176 (306)
T 2p4o_A          100 LVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRG-AIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR  176 (306)
T ss_dssp             EECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTT-EEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE
T ss_pred             EcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCC-eEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc
Confidence            777776654444333333445566666554444333345 999999876532 11111         111234555  78


Q ss_pred             CCCEEEEEe-CCCcEEEEEccC-Ccc-eeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccC
Q 038577          488 TNATLASSS-WDKTVRLWNVFE-GKG-SVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDIS  564 (860)
Q Consensus       488 ~~~~l~s~~-~dg~i~iwd~~~-~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  564 (860)
                      +++.|..+. ..+.|..|++.. +.. .............++++++|++.++....+.|.++|.. ++..........  
T Consensus       177 dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~--  253 (306)
T 2p4o_A          177 FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQG--  253 (306)
T ss_dssp             ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGT--
T ss_pred             CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccc--
Confidence            887665554 567899999875 321 11111112345678999999877776667889999975 655322111111  


Q ss_pred             CCccccccccccccCCCCcEEEEEEe---cCCCEEEEecCC
Q 038577          565 GGRLMTDRRSAANSSSGKCFTTLCYS---ADGSYILAGGSS  602 (860)
Q Consensus       565 ~~~~~~~~~~~~~~~~~~~i~~l~~s---~~g~~l~~~~~d  602 (860)
                                      ....++++|.   ||++.|++.+..
T Consensus       254 ----------------~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          254 ----------------VIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             ----------------CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             ----------------cCCceEEEEecccCCCCEEEEECCC
Confidence                            1247999999   898877766543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.89  E-value=2.4e-07  Score=87.15  Aligned_cols=203  Identities=16%  Similarity=0.085  Sum_probs=137.2

Q ss_pred             eeEEEeecCCCc--eEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeE
Q 038577          382 FCFVTFTEHTNA--VTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEI  459 (860)
Q Consensus       382 ~~~~~~~~~~~~--v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i  459 (860)
                      +.+.++ .|...  ...+.|+ ++..+++.+.+|.|+.+|+.+++..+.+ .+.......+++  ++..|......++.+
T Consensus        44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~--~g~~Ly~ltw~~~~v  118 (268)
T 3nok_A           44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLAS--DGERLYQLTWTEGLL  118 (268)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEE--CSSCEEEEESSSCEE
T ss_pred             EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEE--eCCEEEEEEccCCEE
Confidence            344455 34443  3688887 4667778888899999999999998888 554333334554  455666666655599


Q ss_pred             EEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcc--cC---CCeEEEEEeeCCCEE
Q 038577          460 FVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFP--HT---HDVLTVVYRPDGRQL  534 (860)
Q Consensus       460 ~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~---~~v~~~~~s~~~~~l  534 (860)
                      .+||.++.+.+.++... ..-..++  +|++.|+.+..++.|.++|..+.+....+..  ..   ..++.+.|. +|+..
T Consensus       119 ~V~D~~Tl~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~ly  194 (268)
T 3nok_A          119 FTWSGMPPQRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIY  194 (268)
T ss_dssp             EEEETTTTEEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred             EEEECCcCcEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEE
Confidence            99999999999988743 2223444  5788888877789999999999876555442  21   245667777 77655


Q ss_pred             EEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEec
Q 038577          535 ACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGG  600 (860)
Q Consensus       535 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~  600 (860)
                      +..-.+..|.+.|..+|+.+..+....-....       ...........+.++++|+++.|++.+
T Consensus       195 anvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~-------~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          195 ANIWHSSDVLEIDPATGTVVGVIDASALTRAV-------AGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEETTCSEEEEECTTTCBEEEEEECHHHHHHH-------TTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EEECCCCeEEEEeCCCCcEEEEEECCCCcccc-------cccccCcCCceEEEEEcCCCCEEEEeC
Confidence            55556889999999999999998765210000       000011223579999999876555444

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.89  E-value=0.00045  Score=81.62  Aligned_cols=469  Identities=15%  Similarity=0.167  Sum_probs=248.9

Q ss_pred             EEEeeeCCeEEEEECCCCcEEeecc-CCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEE--EEeecCCceeEEEE
Q 038577           25 KLISPVGNRVSVTDLIKSKTVTLPV-ESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVL--HRVRFKYPVNAILF  101 (860)
Q Consensus        25 ~l~~~~~~~i~v~d~~~~~~~~~~~-~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~--~~~~~~~~v~~~~f  101 (860)
                      .++=...+.|++.+...+....... .....|.+.+.+.  .+++.++ ++.+.++.+..++..  ........|.|+++
T Consensus       485 ~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i  561 (1158)
T 3ei3_A          485 QLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDI  561 (1158)
T ss_dssp             EEEEEESSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEEC
T ss_pred             eEEEEecCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEe
Confidence            3444445668888876654443322 3445677777654  4566664 678888888766432  33336788999999


Q ss_pred             CCC------CCEEEEE--eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEc--CCCCeEEEeecCCeEEEEeec
Q 038577          102 SPN------GKYIAVG--TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWS--PDSNYLLVGSKDLAVRLFYVK  171 (860)
Q Consensus       102 spd------g~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s--~d~~~l~s~~~dg~v~vwd~~  171 (860)
                      .|.      ++++|+|  .++.++|+++++.+.    . ....+.. .....++.+.  ....+|..|-.||.+..+.++
T Consensus       562 ~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~----~-~~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d  635 (1158)
T 3ei3_A          562 TPLGDSNGLSPLCAIGLWTDISARILKLPSFEL----L-HKEMLGG-EIIPRSILMTTFESSHYLLCALGDGALFYFGLN  635 (1158)
T ss_dssp             CCCSSSTTCCSEEEEEETTTTEEEEEETTTCCE----E-EEEECCS-SCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred             ecCCCCcccccEEEEEECCCCEEEEEECCCCCe----E-EEEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence            863      4799999  389999999986542    1 1122221 1223333332  234688899999998777765


Q ss_pred             ccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeee
Q 038577          172 EKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKK  251 (860)
Q Consensus       172 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (860)
                      .. .+..........| ..++.-..+...+..    .+++++..-.+. +..++                         .
T Consensus       636 ~~-tg~l~d~r~~~LG-~~pv~L~~~~~~~~~----~V~a~s~rp~li-y~~~~-------------------------~  683 (1158)
T 3ei3_A          636 IE-TGLLSDRKKVTLG-TQPTVLRTFRSLSTT----NVFACSDRPTVI-YSSNH-------------------------K  683 (1158)
T ss_dssp             TT-TCCEEEEEEEECC-SSCCEEEEEESSSCE----EEEEESSSCEEE-EESSS-------------------------S
T ss_pred             CC-CCccccceeEEcC-CCceEEEEEeeCCce----eEEEECCCCEEE-EEcCC-------------------------c
Confidence            43 2111111122333 234443444333321    344444333332 32111                         0


Q ss_pred             EEeeeeccccCCCCce-EEEEecCC--CCEEEEEEcCCeEEEEECCCcee--EEEEeecCceeEEEEEeeCCCEEEEEEc
Q 038577          252 WGLLRKDDFSQAPSKV-TACDYHRG--LDMVVVGFSNGVFGLYQMPDFVC--IHLLSISREKITTAVFNELGNWLVFGCA  326 (860)
Q Consensus       252 ~~~~~~~~~~~~~~~v-~~~~~~~~--~~~l~~~~~~g~i~~~~~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~  326 (860)
                      +.+..   .  ....+ ....|+..  .+-++..+ ++.+++..++....  ++.+... ..+..++++|+.+.++++..
T Consensus       684 l~~s~---l--~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~-~Tprri~y~~~~~~~~v~~~  756 (1158)
T 3ei3_A          684 LVFSN---V--NLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLY-ESPRKICYQEVSQCFGVLSS  756 (1158)
T ss_dssp             EEEEE---B--SSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECS-SEEEEEEEEGGGTEEEEEEE
T ss_pred             eEEec---c--ChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCC-CCceEEEEcCCCCEEEEEEE
Confidence            11000   0  00112 22233322  23344333 44588877754332  2333332 46778888887776655442


Q ss_pred             c------------------------------------------------CCcEEEEEccCceEEEEecC-cccCeEEEE-
Q 038577          327 K------------------------------------------------LGQLLVWEWRSESYILKQQG-HYFDVNCLA-  356 (860)
Q Consensus       327 ~------------------------------------------------~g~i~v~d~~~~~~~~~~~~-~~~~v~~~~-  356 (860)
                      +                                                .+.+++.|..+.+.+..+.- ....+.+++ 
T Consensus       757 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~  836 (1158)
T 3ei3_A          757 RIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVS  836 (1158)
T ss_dssp             EEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEE
T ss_pred             eccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEE
Confidence            1                                                02355666665555444321 222344444 


Q ss_pred             --EcCC-CCEEEEEe----------CCCcEEEEECCCCeeEEEe-ecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccc
Q 038577          357 --YSPD-SQLLATGA----------DDNKVKVWTVSSGFCFVTF-TEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFR  422 (860)
Q Consensus       357 --~s~~-~~~l~~~~----------~dg~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~  422 (860)
                        |..+ ..++++|+          ..|.|.+|++..++..... ....++|++++-- +| +|+++- ..++++|++..
T Consensus       837 v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~  913 (1158)
T 3ei3_A          837 CKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTT  913 (1158)
T ss_dssp             ECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECT
T ss_pred             EEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCC
Confidence              3322 46888886          3578999998754332221 2346788888754 34 444433 46899999976


Q ss_pred             cceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEE--EECCCCceEEEec-CcccCeEEEEEcCCCCEEEEEeCCC
Q 038577          423 YRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFV--WSMKTGRLLDILS-GHEGPVHGLVFSPTNATLASSSWDK  499 (860)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v--~d~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~dg  499 (860)
                      .+.++ .....-..+..+.....++++++|..-. .+.+  |+...+++...-+ .+...++++.+-.+ ..++.+..+|
T Consensus       914 ~~~L~-~~~~~~~~i~~~~l~~~~~~I~vgD~~~-Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~g  990 (1158)
T 3ei3_A          914 EKELR-TECNHYNNIMALYLKTKGDFILVGDLMR-SVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDD-DNFLGAENAF  990 (1158)
T ss_dssp             TSCEE-EEEEECCCSCEEEEEEETTEEEEEESSB-CEEEEEEETTTTEEEEEEECCSCBCEEEEEEEET-TEEEEEETTS
T ss_pred             CceEE-EEeeccccEEEEEEeccCCEEEEEEhhh-eEEEEEEEcCCCeEEEEEeecccccEEEEEEEcc-CcEEEEcCCC
Confidence            65444 1111111122223334577888887765 4444  5555444443322 24567888888755 4677789999


Q ss_pred             cEEEEEccCCc-------ceeE--EcccCCCeEEEE---EeeC---------CCEEEEEeCCCeEEEEe
Q 038577          500 TVRLWNVFEGK-------GSVE--SFPHTHDVLTVV---YRPD---------GRQLACSTLDGQIHFWD  547 (860)
Q Consensus       500 ~i~iwd~~~~~-------~~~~--~~~~~~~v~~~~---~s~~---------~~~l~~~~~dg~i~iwd  547 (860)
                      .+.+.......       .+..  .+.....|+++.   +.+.         ...++.++.+|.|.+.-
T Consensus       991 Nl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A          991 NLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp             EEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEE
T ss_pred             cEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEE
Confidence            99998765421       1111  112344566664   2222         22466667777776654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.87  E-value=1.9e-06  Score=80.47  Aligned_cols=204  Identities=16%  Similarity=0.142  Sum_probs=139.1

Q ss_pred             eeEEEeecCCC--ceEEEEEeeCCCEEEEEeCCC--cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCC
Q 038577          382 FCFVTFTEHTN--AVTALHFMANNHSLLSASLDG--TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSF  457 (860)
Q Consensus       382 ~~~~~~~~~~~--~v~~i~~~~~~~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  457 (860)
                      +.+.++ .|..  -...+.|++ +..+.+.+.+|  .|+.+|+.+++..+....+....-..+++.  +..|.......+
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~   85 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNH   85 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSS
T ss_pred             EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCC
Confidence            344455 4543  366888886 55666666654  899999999999999887765433444443  566666666666


Q ss_pred             eEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccC-----CCeEEEEEeeCCC
Q 038577          458 EIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHT-----HDVLTVVYRPDGR  532 (860)
Q Consensus       458 ~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~s~~~~  532 (860)
                      .+.+||.++.+.+.++.... .-..+  +++++.|+.+..++.|.++|..+.+....+....     ..++.+.+. +|+
T Consensus        86 ~v~v~D~~tl~~~~ti~~~~-~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~  161 (243)
T 3mbr_X           86 EGFVYDLATLTPRARFRYPG-EGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE  161 (243)
T ss_dssp             EEEEEETTTTEEEEEEECSS-CCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEEEEECCcCcEEEEEeCCC-CceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE
Confidence            99999999999999887433 22344  4577777777778899999999987655544211     345667766 776


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEec
Q 038577          533 QLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGG  600 (860)
Q Consensus       533 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~  600 (860)
                      ..+..-.+..|.+.|..+|+.+..+....-......       .........+.++++|+++.|++.+
T Consensus       162 lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~-------~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          162 LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADA-------LTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTS-------CCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCeEEEEECCCCCEEEEEECCcCcccccc-------ccCCcCCceEEEEEcCCCCEEEEEC
Confidence            555555678999999999999999886532110000       0011234579999999887666555

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.86  E-value=2e-06  Score=87.55  Aligned_cols=241  Identities=12%  Similarity=0.068  Sum_probs=153.6

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeec--------------------CCCceEEEEEee-CCCEEEE
Q 038577          350 FDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTE--------------------HTNAVTALHFMA-NNHSLLS  408 (860)
Q Consensus       350 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------------~~~~v~~i~~~~-~~~~l~s  408 (860)
                      ....++++.++|+.+.++..++.|..|+..++... .+..                    ....+.++++.+ ++ .|+.
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v   96 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYI   96 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEE
Confidence            34567889999987888888899999998765433 2211                    013578999997 55 4555


Q ss_pred             EeCCCcEEEEEccccceeeEeeC----CCCCcEEEEEECC-CCCEEEEEecC----------------CCeEEEEECCCC
Q 038577          409 ASLDGTVRAWDLFRYRNFRTFTT----PSSRQFVSLASDQ-SGEVICAGTLD----------------SFEIFVWSMKTG  467 (860)
Q Consensus       409 ~~~dg~i~~wd~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~l~~~~~~----------------~~~i~v~d~~~~  467 (860)
                      +...+.+..+|..++.. ..+..    ........+++++ +|++.++....                .+.++.||..++
T Consensus        97 ~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  175 (322)
T 2fp8_A           97 VDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK  175 (322)
T ss_dssp             EETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred             EECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence            55555688888765432 22211    1112467899999 99877664321                237999998777


Q ss_pred             ceEEEecCcccCeEEEEEcCCCCEEEEE-eCCCcEEEEEccCCc--ceeEEcccCCCeEEEEEeeCCCEEEEEeC-----
Q 038577          468 RLLDILSGHEGPVHGLVFSPTNATLASS-SWDKTVRLWNVFEGK--GSVESFPHTHDVLTVVYRPDGRQLACSTL-----  539 (860)
Q Consensus       468 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----  539 (860)
                      +...... .......++++|+++.|..+ +..+.|.+|++....  ....+....+ ...++++++|++.++...     
T Consensus       176 ~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~  253 (322)
T 2fp8_A          176 ETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGN  253 (322)
T ss_dssp             EEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred             EEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccccc
Confidence            6543322 22345679999999876655 456889999987532  1111111223 788999999986666544     


Q ss_pred             -----CCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCc
Q 038577          540 -----DGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQ  613 (860)
Q Consensus       540 -----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~  613 (860)
                           .+.|..+|. .++.+..+.......                ...++.+++ .+|++.++....+.|..+++...
T Consensus       254 ~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~----------------~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          254 MHGRVDPKGIKFDE-FGNILEVIPLPPPFA----------------GEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             TTSCEEEEEEEECT-TSCEEEEEECCTTTT----------------TSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred             ccCCCccEEEEECC-CCCEEEEEECCCCCc----------------cccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence                 467889987 477777665432100                013566666 46766666667888999987643

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.84  E-value=1e-05  Score=82.69  Aligned_cols=244  Identities=10%  Similarity=-0.039  Sum_probs=157.4

Q ss_pred             eEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEec
Q 038577          267 VTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQ  346 (860)
Q Consensus       267 v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~  346 (860)
                      .+|.+..+ ...|+.+. ...|+..++....... +......+..++|++.+..|..+....+.|..++...........
T Consensus        36 ~~C~~~~~-~~~ll~~~-~~~I~~i~~~g~~~~~-~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~  112 (349)
T 3v64_C           36 RSCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTL-LLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS  112 (349)
T ss_dssp             SCEEESSS-CCEEEEEC-BSCEEEECTTSCCEEE-EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred             Cccccccc-CceeEeec-ccceEEEeCCCCeeEE-eecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence            44555555 33444444 3457888876544433 333445688999999888888887777899999988765444333


Q ss_pred             CcccCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEe-CC-CcEEEEEcccc
Q 038577          347 GHYFDVNCLAYSPDSQLL-ATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSAS-LD-GTVRAWDLFRY  423 (860)
Q Consensus       347 ~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~d-g~i~~wd~~~~  423 (860)
                      ........+++.+.+..| ++-...+.|.+.++........+...-.....+++.|.+..|+.+. .. +.|..+++...
T Consensus       113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~  192 (349)
T 3v64_C          113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS  192 (349)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC
Confidence            333446789998755555 4555567899999875544444444446789999998665555443 44 67888887543


Q ss_pred             ceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 038577          424 RNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRL  503 (860)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i  503 (860)
                       ....+..........++++|++..|+.+....+.|..+|+........+.........+++. .+...++-...+.|..
T Consensus       193 -~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~  270 (349)
T 3v64_C          193 -GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINS  270 (349)
T ss_dssp             -SCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             -CcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEE
Confidence             33333223334578999999888888888777799999987544444444344566778883 4444555555677877


Q ss_pred             EEccCCcceeEE
Q 038577          504 WNVFEGKGSVES  515 (860)
Q Consensus       504 wd~~~~~~~~~~  515 (860)
                      ++..+++....+
T Consensus       271 ~~~~~G~~~~~i  282 (349)
T 3v64_C          271 ANKFTGKNQEII  282 (349)
T ss_dssp             EETTTCCSCEEE
T ss_pred             EEccCCCccEEe
Confidence            775555544333

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.82  E-value=0.00056  Score=78.62  Aligned_cols=470  Identities=10%  Similarity=0.037  Sum_probs=262.9

Q ss_pred             eCCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee-----cCCc
Q 038577           21 SQNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-----FKYP   95 (860)
Q Consensus        21 sdg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~-----~~~~   95 (860)
                      .+...|-.+..+.+..||..+.+...........|.++.. .+|. |-.++.+ -+..+|..+++......     ....
T Consensus        71 d~~g~lWigT~~Gl~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~  147 (758)
T 3ott_A           71 IDNTYLYMGTDNGILVYNYRADRYEQPETDFPTDVRTMAL-QGDT-LWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNT  147 (758)
T ss_dssp             ETTTEEEEEETTEEEEEETTTTEECCCSCCCCSCEEEEEE-ETTE-EEEEETT-EEEEEETTTCCEEEECHHHHCCSCSC
T ss_pred             cCCCcEEEEeCCCeEEEeCCCCEEECcccCCCceEEEEEe-cCCc-EEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCe
Confidence            3334566666777999999887543321112345777765 4565 4445544 68889987766543211     2346


Q ss_pred             eeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEee--c----cCCCeEEEEEcCCCCeEEEeecCCeEEEEe
Q 038577           96 VNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLA--D----CNDKVTALNWSPDSNYLLVGSKDLAVRLFY  169 (860)
Q Consensus        96 v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~--~----h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd  169 (860)
                      |.++...++|.+.+.. .+-+..++..+++.        ..+.  .    ....|.++...+++..|-.|+. +-+..++
T Consensus       148 i~~i~~d~~g~lWigt-~~Gl~~~~~~~~~~--------~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~  217 (758)
T 3ott_A          148 IYSIIRTKDNQIYVGT-YNGLCRYIPSNGKF--------EGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYF  217 (758)
T ss_dssp             EEEEEECTTCCEEEEE-TTEEEEEETTTTEE--------EEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEE
T ss_pred             EEEEEEcCCCCEEEEe-CCCHhhCccCCCce--------EEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEc
Confidence            8888888888776644 45688888776541        1111  1    1224888888877765555554 4577777


Q ss_pred             ecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCccee
Q 038577          170 VKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRV  249 (860)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (860)
                      ..+. ..   .....+  ....|.++....++.      |..++.+| +.+++..+...                     
T Consensus       218 ~~~~-~~---~~~~~l--~~~~i~~i~~d~~g~------lWigT~~G-l~~~~~~~~~~---------------------  263 (758)
T 3ott_A          218 PSTG-QI---KQTEAF--HNNSIKSLALDGNGD------LLAGTDNG-LYVYHNDTTPL---------------------  263 (758)
T ss_dssp             TTTT-EE---EEEEEE--EEEEEEEEEECTTCC------EEEEETTE-EEEECCTTSCC---------------------
T ss_pred             CCCC-eE---EeccCC--CCCeEEEEEEcCCCC------EEEEeCCc-eeEEecCCCcE---------------------
Confidence            6654 11   011111  234577777776764      55566544 66777654321                     


Q ss_pred             eeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEe-------ecCceeEEEEEeeCCCEEE
Q 038577          250 KKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLS-------ISREKITTAVFNELGNWLV  322 (860)
Q Consensus       250 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~-------~~~~~i~~~~~s~~~~~l~  322 (860)
                      ..+.........-....|.++....+|. |-+|+..| +.++.... . ...+.       .....|.++....+|..-+
T Consensus       264 ~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~-~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi  339 (758)
T 3ott_A          264 QHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNS-A-LQFIPISQITGTGDGNQFYSLFRDSKGFYWF  339 (758)
T ss_dssp             EEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE
T ss_pred             EEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCC-c-eeEEecccCCCCCCCceEEEEEEcCCCCEEE
Confidence            0000000000011234688888888776 55566667 44443321 1 11111       1123577777777766554


Q ss_pred             EEEccCCcEEEEEccCce--EEEEec-------CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEee-c---
Q 038577          323 FGCAKLGQLLVWEWRSES--YILKQQ-------GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFT-E---  389 (860)
Q Consensus       323 ~~~~~~g~i~v~d~~~~~--~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~---  389 (860)
                      . +.  +-+..++..++.  ....+.       .....|.++.-.++|.+-+ |+ ++-+..|+..+++...... .   
T Consensus       340 G-t~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~~~~~~~~~~  414 (758)
T 3ott_A          340 G-GA--NGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQFIHYNIVDNTG  414 (758)
T ss_dssp             E-ET--TEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEEEEEEECCC-
T ss_pred             e-eC--CcceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEEEeecCCCcC
Confidence            4 33  346666655421  111111       0123588888888886544 55 4579999988775443221 1   


Q ss_pred             --CCCceEEEEEeeCCCEEEEEeCCCcEEEEEcccc-----cee---eEee---CCCCCcEEEEEECCCCCEEEEEecCC
Q 038577          390 --HTNAVTALHFMANNHSLLSASLDGTVRAWDLFRY-----RNF---RTFT---TPSSRQFVSLASDQSGEVICAGTLDS  456 (860)
Q Consensus       390 --~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~-----~~~---~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~  456 (860)
                        ....|.++...+++ .|..|+..+-+..+|..+.     ...   ..+.   .-....+.++..+++|.+.+.++..+
T Consensus       415 ~~~~~~v~~i~~d~~g-~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~  493 (758)
T 3ott_A          415 TYNTNWTYYIFEDTAG-QLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNK  493 (758)
T ss_dssp             -CBSSSEEEEEECTTS-EEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCS
T ss_pred             CCCCceEEEEEEcCCC-CEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCC
Confidence              22457888776666 4666776667888886531     111   1111   11223588899999999776433344


Q ss_pred             CeEEEEECCCCceEEEecC---cccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeE-Ecc-cCCCeEEEEEeeCC
Q 038577          457 FEIFVWSMKTGRLLDILSG---HEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVE-SFP-HTHDVLTVVYRPDG  531 (860)
Q Consensus       457 ~~i~v~d~~~~~~~~~~~~---h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~-~~~~v~~~~~s~~~  531 (860)
                       -+..+|..+++.......   ....+.++....+|.+.+. +..| +..||..+...... ..+ ....|.++... +|
T Consensus       494 -Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g  569 (758)
T 3ott_A          494 -GIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQSISFGSFSNNEILSMTCV-KN  569 (758)
T ss_dssp             -SEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCCBCCCCC---CCEEEEEEE-TT
T ss_pred             -CcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceEEecccCCCccceEEEEEC-CC
Confidence             488999887765543211   1346788888888876654 4455 78888765542111 011 23457777664 66


Q ss_pred             CEEEEEeCCCeEEEEeCCCCce
Q 038577          532 RQLACSTLDGQIHFWDPLNGEL  553 (860)
Q Consensus       532 ~~l~~~~~dg~i~iwd~~~~~~  553 (860)
                      + |..++.+| |..||..+.+.
T Consensus       570 ~-lWi~t~~G-l~~~~~~~~~~  589 (758)
T 3ott_A          570 S-IWVSTTNG-LWIIDRKTMDA  589 (758)
T ss_dssp             E-EEEEESSC-EEEEETTTCCE
T ss_pred             C-EEEECCCC-eEEEcCCCcee
Confidence            4 55555666 78889887654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.82  E-value=1.6e-06  Score=81.66  Aligned_cols=185  Identities=10%  Similarity=-0.019  Sum_probs=137.4

Q ss_pred             CceEEEEecCCCCEEEEEEcCC--eEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEE
Q 038577          265 SKVTACDYHRGLDMVVVGFSNG--VFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYI  342 (860)
Q Consensus       265 ~~v~~~~~~~~~~~l~~~~~~g--~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~  342 (860)
                      .....+.|+ ++.+..+.+.+|  .|+.+|+.+++.+..+.... ........++++.+......++.+.+||.++.+.+
T Consensus        43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~  120 (262)
T 3nol_A           43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQV  120 (262)
T ss_dssp             CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEE
T ss_pred             cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEE
Confidence            345788888 565555555655  89999999999998887654 44444455568888888888899999999999999


Q ss_pred             EEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecC--C---CceEEEEEeeCCCEEEEEeCCCcEEE
Q 038577          343 LKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEH--T---NAVTALHFMANNHSLLSASLDGTVRA  417 (860)
Q Consensus       343 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~---~~v~~i~~~~~~~~l~s~~~dg~i~~  417 (860)
                      .++.....   ...++++++.|+....++.|.++|..+.+.+..+...  .   ..+..+.|. +|+..+..-.++.|.+
T Consensus       121 ~ti~~~~e---G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~v  196 (262)
T 3nol_A          121 RSFNYDGE---GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVR  196 (262)
T ss_dssp             EEEECSSC---CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEE
T ss_pred             EEEECCCC---ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEE
Confidence            88864322   2233457777777776788999999999888876542  2   234567776 6765555556889999


Q ss_pred             EEccccceeeEeeCCC-----------CCcEEEEEECCCCCEEEEEecC
Q 038577          418 WDLFRYRNFRTFTTPS-----------SRQFVSLASDQSGEVICAGTLD  455 (860)
Q Consensus       418 wd~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~  455 (860)
                      .|..+++....+....           ..-...++++|+++.|++.+..
T Consensus       197 IDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          197 IDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             ECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             EECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            9999999988887641           2356889999999888887754

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.82  E-value=5.2e-06  Score=83.59  Aligned_cols=228  Identities=11%  Similarity=0.120  Sum_probs=142.5

Q ss_pred             ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeeE
Q 038577          307 EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDN--KVKVWTVSSGFCF  384 (860)
Q Consensus       307 ~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~  384 (860)
                      .....++|+++|+ ++++...++.|..||...... .... ....+..+++.++|+++++.....  .|..++..+++..
T Consensus        32 ~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~~~-~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~  108 (306)
T 2p4o_A           32 TFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQ-IHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE  108 (306)
T ss_dssp             CCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEE-EEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CCcceEEECCCCC-EEEEeCCCCeEEEECCCCceE-EEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE
Confidence            3567899999888 455554558999999876432 2222 234588999999999666554322  4777777777654


Q ss_pred             EEeec-CCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccce-eeEe--------eCCCCCcEEEEEECCCCCEEEEEec
Q 038577          385 VTFTE-HTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRN-FRTF--------TTPSSRQFVSLASDQSGEVICAGTL  454 (860)
Q Consensus       385 ~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~  454 (860)
                      ..... .......++..+++..+++-..++.|.++|..+++. +...        ..........+  +++++.++++..
T Consensus       109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~  186 (306)
T 2p4o_A          109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT  186 (306)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET
T ss_pred             EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC
Confidence            33221 222345555555554455544688888888765421 1100        00111234445  888988888877


Q ss_pred             CCCeEEEEECCC-Cce--EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCccee--EEcccCCCeEEEEEe-
Q 038577          455 DSFEIFVWSMKT-GRL--LDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSV--ESFPHTHDVLTVVYR-  528 (860)
Q Consensus       455 ~~~~i~v~d~~~-~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s-  528 (860)
                      ..+.|+.|++.. ++.  ...+. .......++++++|++.++....+.|.++|.. ++...  .........++++|. 
T Consensus       187 ~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g  264 (306)
T 2p4o_A          187 EKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQ  264 (306)
T ss_dssp             TTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEec
Confidence            766999999874 332  11221 11345678999999887777778899999975 44321  112233568999999 


Q ss_pred             --eCCCEEEEEeCCC
Q 038577          529 --PDGRQLACSTLDG  541 (860)
Q Consensus       529 --~~~~~l~~~~~dg  541 (860)
                        |+++.|++++..+
T Consensus       265 ~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          265 TEGDCTAIYVVTNGG  279 (306)
T ss_dssp             STTTTTEEEEEECTT
T ss_pred             ccCCCCEEEEECCCC
Confidence              8988888776544

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.76  E-value=9.7e-06  Score=84.24  Aligned_cols=243  Identities=10%  Similarity=-0.036  Sum_probs=157.7

Q ss_pred             EEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCc
Q 038577          269 ACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGH  348 (860)
Q Consensus       269 ~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~  348 (860)
                      |.+..+ ..+|+.+. ...|+.+++......... .....+..++|.+.+..|+.+....+.|..++.............
T Consensus        81 C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~~~-~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~  157 (386)
T 3v65_B           81 CKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLL-NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG  157 (386)
T ss_dssp             EEECSS-CCEEEEEC-BSCEEEECTTSCCCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS
T ss_pred             ECCccc-cceeEeec-CccceeeccCCCcEEEEe-cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC
Confidence            333344 33444443 456888888655443333 344568899999988888888777789999998876544443333


Q ss_pred             ccCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEe-CC-CcEEEEEccccce
Q 038577          349 YFDVNCLAYSPDSQLL-ATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSAS-LD-GTVRAWDLFRYRN  425 (860)
Q Consensus       349 ~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~d-g~i~~wd~~~~~~  425 (860)
                      ......+++.+.+..| ++-...+.|.+.++........+...-.....+++.|.+..|+.+. .. +.|..+++... .
T Consensus       158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~  236 (386)
T 3v65_B          158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-G  236 (386)
T ss_dssp             CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-S
T ss_pred             CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-C
Confidence            3445678898765555 4445567888888875544444444446789999998766655544 33 67888877543 3


Q ss_pred             eeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038577          426 FRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN  505 (860)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  505 (860)
                      ...+..........++++|++..|+.+....+.|..+|+........+.........+++ ..+..+++-...+.|..++
T Consensus       237 ~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          237 RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred             cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEE
Confidence            333333334457899999988888888877779999998755444444434456678888 3445555555677788888


Q ss_pred             ccCCcceeEEc
Q 038577          506 VFEGKGSVESF  516 (860)
Q Consensus       506 ~~~~~~~~~~~  516 (860)
                      ..+++....+.
T Consensus       316 ~~~G~~~~~i~  326 (386)
T 3v65_B          316 KFTGKNQEIIR  326 (386)
T ss_dssp             TTTCCSCEEEE
T ss_pred             CCCCcceEEEc
Confidence            66665444433

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.74  E-value=1.5e-06  Score=81.72  Aligned_cols=184  Identities=9%  Similarity=-0.075  Sum_probs=135.4

Q ss_pred             CceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEE
Q 038577          265 SKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILK  344 (860)
Q Consensus       265 ~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~  344 (860)
                      .....+.|+. +.+..+.+.+|.|+++|+.+++.+..+ ... ........++++.+......++.+.+||.++.+.+.+
T Consensus        55 ~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           55 AFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             CCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             cccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEE
Confidence            3457788873 455556667789999999999998887 443 4444445567778888887889999999999999988


Q ss_pred             ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecC--C---CceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 038577          345 QQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEH--T---NAVTALHFMANNHSLLSASLDGTVRAWD  419 (860)
Q Consensus       345 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~---~~v~~i~~~~~~~~l~s~~~dg~i~~wd  419 (860)
                      +..... -..++  ++++.|+.+..++.|.++|..+.+.+..+.-.  .   ..+..+.|. +|+..+....+..|.+.|
T Consensus       132 i~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vID  207 (268)
T 3nok_A          132 TRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEID  207 (268)
T ss_dssp             EECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEEC
T ss_pred             EeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEe
Confidence            864322 23333  57888888888899999999999888877542  2   234667776 676555555678999999


Q ss_pred             ccccceeeEeeCC------------CCCcEEEEEECCCCCEEEEEecC
Q 038577          420 LFRYRNFRTFTTP------------SSRQFVSLASDQSGEVICAGTLD  455 (860)
Q Consensus       420 ~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~  455 (860)
                      ..+++....+...            ...-...++++|+++.|++.+..
T Consensus       208 p~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~  255 (268)
T 3nok_A          208 PATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL  255 (268)
T ss_dssp             TTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred             CCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence            9999988877653            22356899999988777666543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.73  E-value=6.6e-06  Score=83.60  Aligned_cols=237  Identities=10%  Similarity=0.002  Sum_probs=146.3

Q ss_pred             ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEec-C------------------cccCeEEEEEcC-CCCEEEE
Q 038577          307 EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQ-G------------------HYFDVNCLAYSP-DSQLLAT  366 (860)
Q Consensus       307 ~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~-~------------------~~~~v~~~~~s~-~~~~l~~  366 (860)
                      .....+++.++|+.+++.... +.|..|+..++....... .                  ....+..+++.+ ++ .|++
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v   96 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQD-GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYI   96 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTT-SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEE
T ss_pred             CCceEEEEcCCCCEEEEEcCC-CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEE
Confidence            356678889998866665544 889999887754432211 0                  113578899998 55 4555


Q ss_pred             EeCCCcEEEEECCCCeeEEEeec----CCCceEEEEEee-CCCEEEEEeC-----------------CCcEEEEEccccc
Q 038577          367 GADDNKVKVWTVSSGFCFVTFTE----HTNAVTALHFMA-NNHSLLSASL-----------------DGTVRAWDLFRYR  424 (860)
Q Consensus       367 ~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~i~~~~-~~~~l~s~~~-----------------dg~i~~wd~~~~~  424 (860)
                      +...+.+..+|..++........    ....+..+++.+ +|+..++-..                 ++.|..||..+++
T Consensus        97 ~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  176 (322)
T 2fp8_A           97 VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE  176 (322)
T ss_dssp             EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred             EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence            55556688888765543221111    123578899999 8876665432                 3668888876655


Q ss_pred             eeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCc--eEEEecCcccCeEEEEEcCCCCEEEEEeC-----
Q 038577          425 NFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGR--LLDILSGHEGPVHGLVFSPTNATLASSSW-----  497 (860)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~--~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-----  497 (860)
                      .......  ......++++++|+.++++....+.|++|++....  ....+....+ ...+++.++|++.++...     
T Consensus       177 ~~~~~~~--~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~  253 (322)
T 2fp8_A          177 TTLLLKE--LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGN  253 (322)
T ss_dssp             EEEEEEE--ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred             EEEeccC--CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccccc
Confidence            3322211  12335789999999887776554499999987531  1122211223 788999999987766544     


Q ss_pred             -----CCcEEEEEccCCcceeEEccc----CCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCC
Q 038577          498 -----DKTVRLWNVFEGKGSVESFPH----THDVLTVVYRPDGRQLACSTLDGQIHFWDPLN  550 (860)
Q Consensus       498 -----dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  550 (860)
                           .+.|..+|.. ++....+...    ...++.+++ .+++++++...++.|..+++..
T Consensus       254 ~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          254 MHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             TTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             ccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence                 4568888864 4434333322    234666766 4666555555678899998753

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.73  E-value=5.1e-05  Score=76.42  Aligned_cols=231  Identities=10%  Similarity=-0.045  Sum_probs=148.4

Q ss_pred             EEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccC----ceEEEEecCcccCeEE
Q 038577          279 VVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRS----ESYILKQQGHYFDVNC  354 (860)
Q Consensus       279 l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~----~~~~~~~~~~~~~v~~  354 (860)
                      |+.+.. ..|+..++...+....+. .......++|++.+..+..+....+.|..++...    ......+.........
T Consensus         4 ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g   81 (316)
T 1ijq_A            4 LFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG   81 (316)
T ss_dssp             EEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             EEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence            344333 458888887766554443 3456789999998888888887778999999876    2222222222345678


Q ss_pred             EEEcCCCCEE-EEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCC--CcEEEEEccccceeeEeeC
Q 038577          355 LAYSPDSQLL-ATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD--GTVRAWDLFRYRNFRTFTT  431 (860)
Q Consensus       355 ~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d--g~i~~wd~~~~~~~~~~~~  431 (860)
                      +++.+.+..| ++-...+.|.++++........+.........+++.|.+..++.+...  +.|..+++. +...+.+..
T Consensus        82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~  160 (316)
T 1ijq_A           82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVT  160 (316)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEEC
T ss_pred             EEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEE
Confidence            9998755545 454567899999987544433333344678999999866666555443  678888774 333333433


Q ss_pred             CCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec--CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 038577          432 PSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS--GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEG  509 (860)
Q Consensus       432 ~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~  509 (860)
                      ..-.....+++++++..|+.+....+.|..+|+..........  ........+++. .+..+++-...+.|..++..++
T Consensus       161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g  239 (316)
T 1ijq_A          161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  239 (316)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred             CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence            3344678999999988888888776699999997533322222  123446778885 3555555556678888887666


Q ss_pred             ccee
Q 038577          510 KGSV  513 (860)
Q Consensus       510 ~~~~  513 (860)
                      +...
T Consensus       240 ~~~~  243 (316)
T 1ijq_A          240 SDVN  243 (316)
T ss_dssp             CCCE
T ss_pred             cceE
Confidence            5433

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.73  E-value=4.2e-05  Score=78.17  Aligned_cols=235  Identities=10%  Similarity=-0.056  Sum_probs=152.4

Q ss_pred             CEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEEeecCCCceEEE
Q 038577          319 NWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATG-ADDNKVKVWTVSSGFCFVTFTEHTNAVTAL  397 (860)
Q Consensus       319 ~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i  397 (860)
                      .+++++..  ..|+..++........... ...+..++|++.+..|... ...+.|..+++........+.........+
T Consensus        45 ~~ll~~~~--~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gl  121 (349)
T 3v64_C           45 PVLLFANR--IDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGL  121 (349)
T ss_dssp             CEEEEECB--SCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred             ceeEeecc--cceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEE
Confidence            34444433  5678888776655444433 3447899999766666554 457789999988665444443334556789


Q ss_pred             EEeeCCCE-EEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC-CeEEEEECCCCceEEEecC
Q 038577          398 HFMANNHS-LLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS-FEIFVWSMKTGRLLDILSG  475 (860)
Q Consensus       398 ~~~~~~~~-l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~i~v~d~~~~~~~~~~~~  475 (860)
                      ++.+.+.. +++-...+.|.+.++.... ...+..........++++|.+..|+.+.... +.|+.+++...........
T Consensus       122 avd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~  200 (349)
T 3v64_C          122 AVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT  200 (349)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCS
T ss_pred             EEecCCCeEEEEcCCCCeEEEEcCCCCc-eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEEC
Confidence            99875544 4555567789999886443 3333333344678999999888777776654 5899999875443333333


Q ss_pred             cccCeEEEEEcCCCCEEEEEe-CCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcee
Q 038577          476 HEGPVHGLVFSPTNATLASSS-WDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELM  554 (860)
Q Consensus       476 h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  554 (860)
                      .......++++|++..|..+. ..+.|..+|+..................+++ .++....+-...+.|..++..+|+..
T Consensus       201 ~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~  279 (349)
T 3v64_C          201 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQ  279 (349)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCcc
Confidence            345678999998777766655 4577999998764432223233445677887 35555555556778888887777766


Q ss_pred             EEEe
Q 038577          555 YTIE  558 (860)
Q Consensus       555 ~~~~  558 (860)
                      ..+.
T Consensus       280 ~~i~  283 (349)
T 3v64_C          280 EIIR  283 (349)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            6654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.71  E-value=9.9e-05  Score=74.30  Aligned_cols=236  Identities=11%  Similarity=-0.018  Sum_probs=149.5

Q ss_pred             EEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEE-EEeCCCcEEEEEcccc---ceeeEeeCCCCCcEE
Q 038577          363 LLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLL-SASLDGTVRAWDLFRY---RNFRTFTTPSSRQFV  438 (860)
Q Consensus       363 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg~i~~wd~~~~---~~~~~~~~~~~~~~~  438 (860)
                      +|+.+.. ..|+..|+.+......+. ....+.+++|++.+..|+ +-...+.|..+++...   .....+.........
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~   80 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD   80 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             EEEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence            3444444 579999998776655443 456688999998665555 4455688999998751   222222222223457


Q ss_pred             EEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCC--CcEEEEEccCCcceeEEc
Q 038577          439 SLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWD--KTVRLWNVFEGKGSVESF  516 (860)
Q Consensus       439 ~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~  516 (860)
                      .+++++.+..|+.+....+.|.++++........+.........+++.|.+..|..+...  +.|...++.... ...+.
T Consensus        81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~  159 (316)
T 1ijq_A           81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLV  159 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEE
T ss_pred             EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEE
Confidence            889998777777666555599999987554433344344567899999977766655543  678888875443 32222


Q ss_pred             -ccCCCeEEEEEeeCCCEEEEEe-CCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCC
Q 038577          517 -PHTHDVLTVVYRPDGRQLACST-LDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGS  594 (860)
Q Consensus       517 -~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~  594 (860)
                       ..-.....++++|++..|+.+. ..+.|..+|+.... ...+.....                 .......+++. .+.
T Consensus       160 ~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~-----------------~~~~P~giav~-~~~  220 (316)
T 1ijq_A          160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEK-----------------RLAHPFSLAVF-EDK  220 (316)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTT-----------------TTSSEEEEEEE-TTE
T ss_pred             ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCC-----------------ccCCcEEEEEE-CCE
Confidence             3345678999999877777665 45689999987432 233321100                 01135777875 455


Q ss_pred             EEEEecCCCeEEEEECCCceEEEEEe
Q 038577          595 YILAGGSSKYICMYDVADQVLLRRFQ  620 (860)
Q Consensus       595 ~l~~~~~dg~v~vwd~~~~~~~~~~~  620 (860)
                      .+++-...+.|..++..+|+.+..+.
T Consensus       221 ly~~d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          221 VFWTDIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             EEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EEEEECCCCeEEEEeCCCCcceEEEe
Confidence            55666677899999988887666554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.71  E-value=9.3e-06  Score=75.84  Aligned_cols=186  Identities=8%  Similarity=-0.044  Sum_probs=135.2

Q ss_pred             CCceEEEEecCCCCEEEEEEcC--CeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceE
Q 038577          264 PSKVTACDYHRGLDMVVVGFSN--GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESY  341 (860)
Q Consensus       264 ~~~v~~~~~~~~~~~l~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~  341 (860)
                      ......+.|++ +.+..+.+..  ..|+.+|+.+++.+..+..... ........+++.+......++.+.+||.++.+.
T Consensus        20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~   97 (243)
T 3mbr_X           20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTP   97 (243)
T ss_dssp             TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTTEE
T ss_pred             ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEECCcCcE
Confidence            34577889986 4444444443  4899999999999988876543 333444556788888887789999999999999


Q ss_pred             EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCC-----CceEEEEEeeCCCEEEEEeCCCcEE
Q 038577          342 ILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHT-----NAVTALHFMANNHSLLSASLDGTVR  416 (860)
Q Consensus       342 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~i~~~~~~~~l~s~~~dg~i~  416 (860)
                      +.++..... -..++  +++..|+++..++.|.++|..+.+.+..+.-..     ..+..+.+. +|+.++..-.+..|.
T Consensus        98 ~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~  173 (243)
T 3mbr_X           98 RARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIA  173 (243)
T ss_dssp             EEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEE
T ss_pred             EEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEE
Confidence            988865332 23444  567777777778999999999998888775422     245566665 666555555677999


Q ss_pred             EEEccccceeeEeeCC------------CCCcEEEEEECCCCCEEEEEecC
Q 038577          417 AWDLFRYRNFRTFTTP------------SSRQFVSLASDQSGEVICAGTLD  455 (860)
Q Consensus       417 ~wd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~  455 (860)
                      +.|..+++....+...            ...-...++++|+++.|++.+..
T Consensus       174 vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          174 RIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             EECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             EEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence            9999999988887733            22356899999998888777654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.69  E-value=3.4e-05  Score=80.15  Aligned_cols=236  Identities=10%  Similarity=-0.049  Sum_probs=154.1

Q ss_pred             CEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEEeecCCCceEEE
Q 038577          319 NWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATG-ADDNKVKVWTVSSGFCFVTFTEHTNAVTAL  397 (860)
Q Consensus       319 ~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i  397 (860)
                      .+++++..  ..|+.+++........... ...+..++|.+.+..|+.. ...+.|..+++........+.........+
T Consensus        88 ~~l~~~~~--~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gl  164 (386)
T 3v65_B           88 PVLLFANR--IDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGL  164 (386)
T ss_dssp             CEEEEECB--SCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCE
T ss_pred             ceeEeecC--ccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEE
Confidence            34444433  6788888877655444433 3457899999766555544 457789999988665444444334456788


Q ss_pred             EEeeCCCEE-EEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC-CeEEEEECCCCceEEEecC
Q 038577          398 HFMANNHSL-LSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS-FEIFVWSMKTGRLLDILSG  475 (860)
Q Consensus       398 ~~~~~~~~l-~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~i~v~d~~~~~~~~~~~~  475 (860)
                      ++.+.+..| ++-...+.|.+.++.... ...+..........++++|.+..|+.+.... +.|+.+++...........
T Consensus       165 avd~~~g~lY~~d~~~~~I~~~~~dg~~-~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~  243 (386)
T 3v65_B          165 AVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT  243 (386)
T ss_dssp             EEETTTTEEEEEETTTTEEEECBTTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred             EEEeCCCeEEEEcCCCCeEEEEeCCCCc-eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEEC
Confidence            998755444 555566788888875433 3333333345678999999888887776654 5899999875544444433


Q ss_pred             cccCeEEEEEcCCCCEEEEEe-CCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcee
Q 038577          476 HEGPVHGLVFSPTNATLASSS-WDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELM  554 (860)
Q Consensus       476 h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  554 (860)
                      .......|+++|++..|..+. ..+.|..+|+..................+++ .++.++.+-...+.|..++..+|+..
T Consensus       244 ~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~  322 (386)
T 3v65_B          244 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQ  322 (386)
T ss_dssp             SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcce
Confidence            445678999998777666554 4577999998654433223333445677888 45555556566788999997788776


Q ss_pred             EEEec
Q 038577          555 YTIEG  559 (860)
Q Consensus       555 ~~~~~  559 (860)
                      ..+..
T Consensus       323 ~~i~~  327 (386)
T 3v65_B          323 EIIRN  327 (386)
T ss_dssp             EEEEC
T ss_pred             EEEcc
Confidence            66653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.69  E-value=0.00011  Score=76.71  Aligned_cols=241  Identities=9%  Similarity=-0.059  Sum_probs=155.9

Q ss_pred             EEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc----eEEEEecCcccCeEEEEE
Q 038577          282 GFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE----SYILKQQGHYFDVNCLAY  357 (860)
Q Consensus       282 ~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~----~~~~~~~~~~~~v~~~~~  357 (860)
                      -.....|+..++......... .....+..++|++.+..|..+....+.|..+++...    ...............+++
T Consensus        88 ~~~~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glav  166 (400)
T 3p5b_L           88 FTNRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV  166 (400)
T ss_dssp             EEETTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEE
T ss_pred             EeccceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEE
Confidence            334578888888765444333 345678899999988888888777788999988752    222233334456788999


Q ss_pred             cCCCC-EEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeC--CCcEEEEEccccceeeEeeCCCC
Q 038577          358 SPDSQ-LLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASL--DGTVRAWDLFRYRNFRTFTTPSS  434 (860)
Q Consensus       358 s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~~  434 (860)
                      .+.+. +.++-...+.|.+.++........+...-.....+++.|.+..|+.+..  .+.|...++... ....+....-
T Consensus       167 D~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~-~~~~~~~~~l  245 (400)
T 3p5b_L          167 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENI  245 (400)
T ss_dssp             ETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC-SCEEEECSSC
T ss_pred             EecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC-ccEEEEECCC
Confidence            88444 4455556788999998765554444444556899999996666655542  367888887543 3333333333


Q ss_pred             CcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC--cccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcce
Q 038577          435 RQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG--HEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGS  512 (860)
Q Consensus       435 ~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  512 (860)
                      .....+++++++..|+.+......|..+|+...........  ......++++. .+.++++-...+.|..+|..+++..
T Consensus       246 ~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~  324 (400)
T 3p5b_L          246 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV  324 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCC
T ss_pred             CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCce
Confidence            56789999999998888887766999999875544333332  23445677773 3445555556678888887777655


Q ss_pred             eEEcccCCCeEEE
Q 038577          513 VESFPHTHDVLTV  525 (860)
Q Consensus       513 ~~~~~~~~~v~~~  525 (860)
                      ..+.........+
T Consensus       325 ~~i~~~~~~p~~i  337 (400)
T 3p5b_L          325 NLLAENLLSPEDM  337 (400)
T ss_dssp             EEEECSCSCEEEE
T ss_pred             EEEecCCCCCceE
Confidence            4444333334443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.67  E-value=2.5e-05  Score=74.30  Aligned_cols=210  Identities=14%  Similarity=0.128  Sum_probs=137.2

Q ss_pred             EeecCCCceEEEEEeeCCCEEE-EEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEEC
Q 038577          386 TFTEHTNAVTALHFMANNHSLL-SASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSM  464 (860)
Q Consensus       386 ~~~~~~~~v~~i~~~~~~~~l~-s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~  464 (860)
                      .+.+-...+..++++|++..|+ +...++.|...|.. ++..+.+........-.+++.+++.++++.-.++ .+.++++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~-~l~~~~v   98 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDY-AIYVISL   98 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTT-EEEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCC-cEEEEEc
Confidence            3445567899999999876555 46678889999987 8888888776656788999999887665544444 8999988


Q ss_pred             CCCce---EEEec------CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccC---CcceeEEc-------ccCCCeEEE
Q 038577          465 KTGRL---LDILS------GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFE---GKGSVESF-------PHTHDVLTV  525 (860)
Q Consensus       465 ~~~~~---~~~~~------~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~-------~~~~~v~~~  525 (860)
                      .....   +....      ........++|+|.++.|.++.......+|.+..   ........       .+...+.++
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            75442   22221      1234568999999998887777766666666641   11111110       134467899


Q ss_pred             EEeeCCC-EEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCe
Q 038577          526 VYRPDGR-QLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKY  604 (860)
Q Consensus       526 ~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~  604 (860)
                      +++|... +++....+..+.++|.. |+.+..+.-.....+-           ...-.....++|.++|+..++ ++-..
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l-----------~~~~~qpEGia~d~~G~lyIv-sE~n~  245 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGL-----------SHNIKQAEGVAMDASGNIYIV-SEPNR  245 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGC-----------SSCCCSEEEEEECTTCCEEEE-ETTTE
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCc-----------ccccCCCCeeEECCCCCEEEE-cCCce
Confidence            9999654 55556667779999975 6666665543221000           000113689999999985554 66666


Q ss_pred             EEEEEC
Q 038577          605 ICMYDV  610 (860)
Q Consensus       605 v~vwd~  610 (860)
                      ++.+.-
T Consensus       246 ~y~f~~  251 (255)
T 3qqz_A          246 FYRFTP  251 (255)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            666643

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.65  E-value=1.2e-05  Score=91.90  Aligned_cols=193  Identities=11%  Similarity=0.121  Sum_probs=116.8

Q ss_pred             CeEEEEEc-CCCCEEEEEeC-CC----cEEEEECCCC-eeEEE-eecCCCceEEEEEeeCCCEEEEEeCC-----CcEEE
Q 038577          351 DVNCLAYS-PDSQLLATGAD-DN----KVKVWTVSSG-FCFVT-FTEHTNAVTALHFMANNHSLLSASLD-----GTVRA  417 (860)
Q Consensus       351 ~v~~~~~s-~~~~~l~~~~~-dg----~i~iwd~~~~-~~~~~-~~~~~~~v~~i~~~~~~~~l~s~~~d-----g~i~~  417 (860)
                      .+...+|| |||++||.+.. +|    .|+++|+.++ +.+.. +.   .....+.|+||++.|+....|     ..|..
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            57789999 99998886543 22    4999999988 63211 11   113467899999888777655     25778


Q ss_pred             EEcccccee--eEeeCCCCCcEEEEEECCCCCEEEEEecC--CCeEEEEECCCC--ce--EEEecCcccCeEEEEEcCCC
Q 038577          418 WDLFRYRNF--RTFTTPSSRQFVSLASDQSGEVICAGTLD--SFEIFVWSMKTG--RL--LDILSGHEGPVHGLVFSPTN  489 (860)
Q Consensus       418 wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~i~v~d~~~~--~~--~~~~~~h~~~v~~l~~s~~~  489 (860)
                      +++.++...  ..+..+.......+.++|||++|+.....  ...|+++|+.++  +.  ........+...++.|+. |
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g  330 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T  330 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence            888765432  23333333456788999999999876633  237899999876  33  333333445556666554 5


Q ss_pred             CEEE-EEeCC--C--cEEEEEccCCcceeE-EcccCCC--eEEEEEeeCCCEEEEEeCCCe--EEEEeC
Q 038577          490 ATLA-SSSWD--K--TVRLWNVFEGKGSVE-SFPHTHD--VLTVVYRPDGRQLACSTLDGQ--IHFWDP  548 (860)
Q Consensus       490 ~~l~-s~~~d--g--~i~iwd~~~~~~~~~-~~~~~~~--v~~~~~s~~~~~l~~~~~dg~--i~iwd~  548 (860)
                      +.|+ ....+  +  .|..+|+.+...... +..+...  +..+.+. .+.++++...+|.  |.++++
T Consensus       331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            5544 44433  2  566667654222233 4444443  3444443 3344556666775  556665

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.64  E-value=5.6e-05  Score=75.79  Aligned_cols=229  Identities=10%  Similarity=-0.017  Sum_probs=147.5

Q ss_pred             CCeEEEEECCCce-eEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceE-EEEecCcccCeEEEEEcCCCC
Q 038577          285 NGVFGLYQMPDFV-CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESY-ILKQQGHYFDVNCLAYSPDSQ  362 (860)
Q Consensus       285 ~g~i~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~-~~~~~~~~~~v~~~~~s~~~~  362 (860)
                      ...|+.+++.... ....+.........+.|.+.+..|..+....+.|..++...+.. .............+++.+.+.
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g   91 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   91 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence            4578888887653 11122222345678999998888888877778999999876532 111122223466889987554


Q ss_pred             EE-EEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEe--CCCcEEEEEccccceeeEeeCCCCCcEEE
Q 038577          363 LL-ATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSAS--LDGTVRAWDLFRYRNFRTFTTPSSRQFVS  439 (860)
Q Consensus       363 ~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  439 (860)
                      .| ++-...+.|.++++..................+++.|.+..|+.+.  ..+.|...++.. .....+....-.....
T Consensus        92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~~Png  170 (318)
T 3sov_A           92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNG  170 (318)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEE
T ss_pred             eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCCCccE
Confidence            44 5545577899999875444333334556789999998765665554  256788887753 3333333333446789


Q ss_pred             EEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEE
Q 038577          440 LASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVES  515 (860)
Q Consensus       440 ~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  515 (860)
                      +++++++..|+.+....+.|..+|+..........+.......+++. .+..+++-...+.|..++..+++....+
T Consensus       171 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          171 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             EEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEE
Confidence            99999888888888777799999987544333333344556778875 3344555555678888888777644333

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.60  E-value=4.3e-06  Score=94.17  Aligned_cols=242  Identities=14%  Similarity=0.086  Sum_probs=141.0

Q ss_pred             EEEEcC-CCCEEEEEeCCC-----------cEEEEECCCCee--EEEeec-CCCceEEEEEeeCCCEEEEEeC-CCcEEE
Q 038577          354 CLAYSP-DSQLLATGADDN-----------KVKVWTVSSGFC--FVTFTE-HTNAVTALHFMANNHSLLSASL-DGTVRA  417 (860)
Q Consensus       354 ~~~~s~-~~~~l~~~~~dg-----------~i~iwd~~~~~~--~~~~~~-~~~~v~~i~~~~~~~~l~s~~~-dg~i~~  417 (860)
                      ..++.+ +++.++.|+.++           .+.+||..+++-  +..+.. +.....++++..+++.++.||. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            556677 888888887543           588999887653  222221 2333445677789999999984 457999


Q ss_pred             EEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEec-CC----CeEEEEECCCCceEEEe----cCcccCeEEEEEcCC
Q 038577          418 WDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTL-DS----FEIFVWSMKTGRLLDIL----SGHEGPVHGLVFSPT  488 (860)
Q Consensus       418 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~----~~i~v~d~~~~~~~~~~----~~h~~~v~~l~~s~~  488 (860)
                      ||..+.+-...-..+......+++..++|+++++|+. ++    ..+.+||..+.+....-    ......-....+..+
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~  349 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD  349 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence            9988765333323333333345667789999999883 32    27999999887644320    000000000122345


Q ss_pred             CCEEEEEeCCC---------cEEEEEccCCcceeEEccc---------CCCeEEEEEee-CCCEEEEEeCCC--------
Q 038577          489 NATLASSSWDK---------TVRLWNVFEGKGSVESFPH---------THDVLTVVYRP-DGRQLACSTLDG--------  541 (860)
Q Consensus       489 ~~~l~s~~~dg---------~i~iwd~~~~~~~~~~~~~---------~~~v~~~~~s~-~~~~l~~~~~dg--------  541 (860)
                      +..++.++.+|         .+..||..+..-.......         ...-.++.|.. ++++++.|+.++        
T Consensus       350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~  429 (656)
T 1k3i_A          350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT  429 (656)
T ss_dssp             CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred             CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCC
Confidence            55555565444         4678888766522211111         11234555543 777888887543        


Q ss_pred             ---eEEEEeCCCCceeEEE--ecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCC-----------CeE
Q 038577          542 ---QIHFWDPLNGELMYTI--EGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSS-----------KYI  605 (860)
Q Consensus       542 ---~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-----------g~v  605 (860)
                         .+.+||..+.+-....  ..+.                   ...-.+++..|+|+.++.|+.+           ..+
T Consensus       430 ~~~~v~~yd~~~~~W~~~~~~~mp~-------------------~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v  490 (656)
T 1k3i_A          430 NAHIITLGEPGTSPNTVFASNGLYF-------------------ARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTP  490 (656)
T ss_dssp             CEEEEECCSTTSCCEEEECTTCCSS-------------------CCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCC
T ss_pred             cceEEEcCCCCCCCeeEEccCCCCC-------------------CcccCCeEECCCCCEEEECCcccCcCcCCCCcccce
Confidence               6778888766543322  1111                   1123455677899999999864           346


Q ss_pred             EEEECCCce
Q 038577          606 CMYDVADQV  614 (860)
Q Consensus       606 ~vwd~~~~~  614 (860)
                      .+||..+++
T Consensus       491 ~~ydp~t~~  499 (656)
T 1k3i_A          491 EIYVPEQDT  499 (656)
T ss_dssp             EEEEGGGTE
T ss_pred             EEEcCCCCc
Confidence            677766543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.60  E-value=1.7e-06  Score=97.44  Aligned_cols=280  Identities=11%  Similarity=0.052  Sum_probs=157.0

Q ss_pred             EEEecC-CCCEEEEEEcCC-----------eEEEEECCCceeE--EEEeecC-ceeEEEEEeeCCCEEEEEEccCCcEEE
Q 038577          269 ACDYHR-GLDMVVVGFSNG-----------VFGLYQMPDFVCI--HLLSISR-EKITTAVFNELGNWLVFGCAKLGQLLV  333 (860)
Q Consensus       269 ~~~~~~-~~~~l~~~~~~g-----------~i~~~~~~~~~~~--~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~g~i~v  333 (860)
                      .+++.| +++.++.|+.+.           .+.+||..+.+..  ..+.... ....++++..+|+.+++++..+..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            556667 888888887542           6889998776533  2222222 233457778899999998877678999


Q ss_pred             EEccCceEEEEecCccc-CeEEEEEcCCCCEEEEEe-CC-----CcEEEEECCCCeeEEEe----ecCCCceEEEEEeeC
Q 038577          334 WEWRSESYILKQQGHYF-DVNCLAYSPDSQLLATGA-DD-----NKVKVWTVSSGFCFVTF----TEHTNAVTALHFMAN  402 (860)
Q Consensus       334 ~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~-~d-----g~i~iwd~~~~~~~~~~----~~~~~~v~~i~~~~~  402 (860)
                      ||..+++.......+.. .-.+++..++|+.++.|+ .+     ..+.+||..++.-...-    ......-....+..+
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~  349 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD  349 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence            99988765543222211 123456677999999988 34     46899998876533220    000000000111234


Q ss_pred             CCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCccc----
Q 038577          403 NHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEG----  478 (860)
Q Consensus       403 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~----  478 (860)
                      +..++.++.+|.+....                                  ... .+..||..+.........+..    
T Consensus       350 ~~iyv~Gg~~g~~~~~~----------------------------------~~~-~v~~yd~~~~~w~~~~~~~~~~~~~  394 (656)
T 1k3i_A          350 NHAWLFGWKKGSVFQAG----------------------------------PST-AMNWYYTSGSGDVKSAGKRQSNRGV  394 (656)
T ss_dssp             CSCCEEECGGGCEEECC----------------------------------SSS-EEEEEECSTTCEEEEEEECEETTEE
T ss_pred             CceEEEECCCCcEEEec----------------------------------Ccc-ceeeeecCCcceeecCCcccccccc
Confidence            44555555555432111                                  011 566666665543332221111    


Q ss_pred             -----CeEEEEEcC-CCCEEEEEeCCC-----------cEEEEEccCCcceeEE---cccCCCeEEEEEeeCCCEEEEEe
Q 038577          479 -----PVHGLVFSP-TNATLASSSWDK-----------TVRLWNVFEGKGSVES---FPHTHDVLTVVYRPDGRQLACST  538 (860)
Q Consensus       479 -----~v~~l~~s~-~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~  538 (860)
                           .-.++.|.. ++++++.|+.++           .+.+||..+..-....   ......-.+++..|++++++.|+
T Consensus       395 ~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG  474 (656)
T 1k3i_A          395 APDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGG  474 (656)
T ss_dssp             CCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECC
T ss_pred             CCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECC
Confidence                 123444433 677777777432           5778887765422221   11222234456678999999997


Q ss_pred             CC-----------CeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecC
Q 038577          539 LD-----------GQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGS  601 (860)
Q Consensus       539 ~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~  601 (860)
                      .+           ..+.+||..+.+-...-....                  ......+..+.|||+.++.|+.
T Consensus       475 ~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~------------------~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          475 QRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSI------------------VRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             BSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSS------------------CCCTTEEEEECTTSCEEEEECC
T ss_pred             cccCcCcCCCCcccceEEEcCCCCceeecCCCCC------------------ccccccHhhcCCCcEEEecCCC
Confidence            54           458899987654322100000                  0011345567799999999985

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.57  E-value=1.7e-05  Score=83.63  Aligned_cols=237  Identities=14%  Similarity=0.096  Sum_probs=144.4

Q ss_pred             eeEEEEEee-CCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeC-CC----cEEEEECCCC
Q 038577          308 KITTAVFNE-LGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGAD-DN----KVKVWTVSSG  381 (860)
Q Consensus       308 ~i~~~~~s~-~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg----~i~iwd~~~~  381 (860)
                      ....++++| ++..|.++... +.|+.+|...+....... .......++++++|+.|+++.. ++    .+..++....
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred             CCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc
Confidence            567889997 46666666655 789999988776544433 4456889999999996666554 22    2444443321


Q ss_pred             ee-EEEeecCCCceEEEEEee-CCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeE
Q 038577          382 FC-FVTFTEHTNAVTALHFMA-NNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEI  459 (860)
Q Consensus       382 ~~-~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i  459 (860)
                      .. ...+. .......++++| ++..+++-..++.|..++....................++++|+|++|+++....+.|
T Consensus       216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I  294 (430)
T 3tc9_A          216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI  294 (430)
T ss_dssp             SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred             eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence            11 12222 234467788999 6766666667789999998766543333443334568899999999888877766699


Q ss_pred             EEEECCC--Cce--EEEecCc---------------ccCeE-EEEEc--------CCCCEEEEEeCCCcEEEEEccCCcc
Q 038577          460 FVWSMKT--GRL--LDILSGH---------------EGPVH-GLVFS--------PTNATLASSSWDKTVRLWNVFEGKG  511 (860)
Q Consensus       460 ~v~d~~~--~~~--~~~~~~h---------------~~~v~-~l~~s--------~~~~~l~s~~~dg~i~iwd~~~~~~  511 (860)
                      +.++...  ++.  ...+.+.               -.... .++..        +++.+.++-...+.|+.++. ++. 
T Consensus       295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~-  372 (430)
T 3tc9_A          295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGR-  372 (430)
T ss_dssp             EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSE-
T ss_pred             EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCc-
Confidence            9987653  222  1222111               11123 45553        33555555555677888873 443 


Q ss_pred             eeEEccc------------------CCCeEEEEEeeC-CCEEEEEeCCCeEEEEeCC
Q 038577          512 SVESFPH------------------THDVLTVVYRPD-GRQLACSTLDGQIHFWDPL  549 (860)
Q Consensus       512 ~~~~~~~------------------~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~  549 (860)
                      .....+.                  -.....++++|+ +.++++-..+..|+.++++
T Consensus       373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            2222211                  124788999995 5544444556678877653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.56  E-value=6.7e-05  Score=71.36  Aligned_cols=201  Identities=9%  Similarity=0.104  Sum_probs=138.0

Q ss_pred             EeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEec-CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 038577          302 LSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQ-GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS  380 (860)
Q Consensus       302 ~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  380 (860)
                      +.+-...+..++++|++..|+++...++.|...|.. ++.+..+. .-......+++.+++.++++.-.++.+.++++..
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~  100 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP  100 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence            344446799999999998888877778999999998 77776663 2235688899999987767666678899998765


Q ss_pred             Cee---EEEee------cCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccc---cceeeEee------CCCCCcEEEEEE
Q 038577          381 GFC---FVTFT------EHTNAVTALHFMANNHSLLSASLDGTVRAWDLFR---YRNFRTFT------TPSSRQFVSLAS  442 (860)
Q Consensus       381 ~~~---~~~~~------~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~---~~~~~~~~------~~~~~~~~~~~~  442 (860)
                      ...   +....      ..+.....++|+|.++.|+++.......+|.+..   ......+.      ......+.++++
T Consensus       101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~  180 (255)
T 3qqz_A          101 NSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEF  180 (255)
T ss_dssp             TCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEE
T ss_pred             CCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEE
Confidence            442   22221      1344568999999998888777666666666641   11122221      112335688999


Q ss_pred             CCCCCEEEEEecCCCeEEEEECCCCceEEEecCcc---------cCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038577          443 DQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHE---------GPVHGLVFSPTNATLASSSWDKTVRLWN  505 (860)
Q Consensus       443 ~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~---------~~v~~l~~s~~~~~l~s~~~dg~i~iwd  505 (860)
                      +|....+++-+..+..+..+|.+ |+.+..+.-..         .....|+|.++|++.++ ++.+.++.+.
T Consensus       181 dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          181 NQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT  250 (255)
T ss_dssp             ETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred             cCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence            99887777777776699999976 55665543221         25689999999985554 6666565554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.55  E-value=4.1e-05  Score=80.65  Aligned_cols=251  Identities=9%  Similarity=0.096  Sum_probs=141.8

Q ss_pred             CeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCC-C----cEEEEEccccc
Q 038577          351 DVNCLAYSP-DSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD-G----TVRAWDLFRYR  424 (860)
Q Consensus       351 ~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d-g----~i~~wd~~~~~  424 (860)
                      ....++++| ++..|.++...+.|+.+|+..+...... ........++++++++.|+.+... +    .+..++ ..+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESG  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGT
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCc
Confidence            467899998 4556666665588999998876654433 355678999999999966666542 2    233333 3332


Q ss_pred             ee--eEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec-CcccCeEEEEEcCCCCEEEEE-eCCCc
Q 038577          425 NF--RTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS-GHEGPVHGLVFSPTNATLASS-SWDKT  500 (860)
Q Consensus       425 ~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~-~~dg~  500 (860)
                      ..  ..+.  .......++++|++..|+++....+.|+.++..++....... +.......++|+|++++|..+ ...+.
T Consensus       216 ~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~  293 (430)
T 3tc9_A          216 FKVITELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY  293 (430)
T ss_dssp             SCSEEEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred             eeeeeeec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence            22  2222  122346788999444455555444499999998766532222 122456789999999955544 45778


Q ss_pred             EEEEEccCC--cc--eeEEccc---------------CCCeE-EEEEe--------eCCCEEEEEeCCCeEEEEeCCCCc
Q 038577          501 VRLWNVFEG--KG--SVESFPH---------------THDVL-TVVYR--------PDGRQLACSTLDGQIHFWDPLNGE  552 (860)
Q Consensus       501 i~iwd~~~~--~~--~~~~~~~---------------~~~v~-~~~~s--------~~~~~l~~~~~dg~i~iwd~~~~~  552 (860)
                      |..++....  ..  ...+.+.               -.... .++..        ++|.+.++-...+.|+.++. +|+
T Consensus       294 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~  372 (430)
T 3tc9_A          294 ILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGR  372 (430)
T ss_dssp             EEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSE
T ss_pred             EEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCc
Confidence            999887542  10  1111110               11123 45553        33555555556678888883 564


Q ss_pred             eeEEEeccc--ccCCCccccccccccccCCCCcEEEEEEecC-CCEEEEecCCCeEEEEECC
Q 038577          553 LMYTIEGRR--DISGGRLMTDRRSAANSSSGKCFTTLCYSAD-GSYILAGGSSKYICMYDVA  611 (860)
Q Consensus       553 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~-g~~l~~~~~dg~v~vwd~~  611 (860)
                      .. .+.+..  ...+....    .......-.....++++|+ |.++++-.....|+.++++
T Consensus       373 v~-~~~g~g~~~~~G~~dG----~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          373 VT-TFAGRGSNGTSGYNDG----DLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EE-EEEECCTTSSSSCBCE----ETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EE-EEEeCCCCCCCcccCC----CchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            33 333221  00000000    0000011124789999995 6555655566788877754

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.54  E-value=8.7e-05  Score=74.42  Aligned_cols=235  Identities=10%  Similarity=0.025  Sum_probs=146.8

Q ss_pred             EEEEEeCCCcEEEEECCCCe--eEEEeecCCCceEEEEEeeCCCEE-EEEeCCCcEEEEEccccceeeEeeCCCCCcEEE
Q 038577          363 LLATGADDNKVKVWTVSSGF--CFVTFTEHTNAVTALHFMANNHSL-LSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVS  439 (860)
Q Consensus       363 ~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l-~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  439 (860)
                      +|+.+. ...|+.+++....  ....+. ....+.++.|.+.+..| ++-...+.|..+++........+..........
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g   83 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG   83 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCE
T ss_pred             EEEEEc-cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccE
Confidence            344433 3678899987653  222222 23456789999855444 455567789999987654322222222234567


Q ss_pred             EEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeC--CCcEEEEEccCCcceeEEcc
Q 038577          440 LASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSW--DKTVRLWNVFEGKGSVESFP  517 (860)
Q Consensus       440 ~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~  517 (860)
                      +++++.+..|+......+.|.++++........+.........+++.|.+..|+.+..  .+.|...++...........
T Consensus        84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~  163 (318)
T 3sov_A           84 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS  163 (318)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred             EEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence            8999877777766665559999998755443334344566789999997666666653  47788888765432222223


Q ss_pred             cCCCeEEEEEeeCCCEEEEEe-CCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEE
Q 038577          518 HTHDVLTVVYRPDGRQLACST-LDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYI  596 (860)
Q Consensus       518 ~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l  596 (860)
                      .-.....++++|++..|+.+. ..+.|..+|+............                    ......+++.. +..+
T Consensus       164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--------------------~~~P~glav~~-~~ly  222 (318)
T 3sov_A          164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--------------------LPHPFALTLFE-DILY  222 (318)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSC--------------------CSCEEEEEEET-TEEE
T ss_pred             CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCC--------------------CCCceEEEEeC-CEEE
Confidence            344578999999777777664 4678999998643322222111                    11356777753 3455


Q ss_pred             EEecCCCeEEEEECCCceEEEEEe
Q 038577          597 LAGGSSKYICMYDVADQVLLRRFQ  620 (860)
Q Consensus       597 ~~~~~dg~v~vwd~~~~~~~~~~~  620 (860)
                      .+-...+.|..++..+|+..+.+.
T Consensus       223 wtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          223 WTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             EEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EEecCCCeEEEEECCCCCceEEEe
Confidence            555567899999998887766554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.53  E-value=0.00038  Score=72.51  Aligned_cols=237  Identities=11%  Similarity=-0.031  Sum_probs=153.6

Q ss_pred             EEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEE-eCCCcEEEEEccccc---eeeEeeCCCCCcEE
Q 038577          363 LLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSA-SLDGTVRAWDLFRYR---NFRTFTTPSSRQFV  438 (860)
Q Consensus       363 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~-~~dg~i~~wd~~~~~---~~~~~~~~~~~~~~  438 (860)
                      +|+.+.. ..|+..++......... .....+.+++|++.+..|+.+ ...+.|..+++....   ....+.........
T Consensus        85 ~ll~~~~-~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           85 YLFFTNR-HEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             EEEEEET-TEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             eeEEecc-ceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            4544443 68898898766554444 345678899999866555544 456788888886522   22333333444678


Q ss_pred             EEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeC--CCcEEEEEccCCcceeEEc
Q 038577          439 SLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSW--DKTVRLWNVFEGKGSVESF  516 (860)
Q Consensus       439 ~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~  516 (860)
                      .+++++.+..|+.+....+.|.+.++........+.........|++.|.+.+|+.+..  .+.|...++..........
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~  242 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  242 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence            89999977777777666569999999866555555444556889999997776665553  3678888887654333333


Q ss_pred             ccCCCeEEEEEeeCCCEEEEEe-CCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCE
Q 038577          517 PHTHDVLTVVYRPDGRQLACST-LDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSY  595 (860)
Q Consensus       517 ~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~  595 (860)
                      ..-.....+++++++..|+.+. ..+.|..+|++.............                  -.....+++. .+..
T Consensus       243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~------------------l~~P~gl~v~-~~~l  303 (400)
T 3p5b_L          243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR------------------LAHPFSLAVF-EDKV  303 (400)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSST------------------TSSEEEEEEE-TTEE
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCC------------------CCCCEEEEEe-CCEE
Confidence            3446789999999888887775 456899999865433332222111                  0124567763 3445


Q ss_pred             EEEecCCCeEEEEECCCceEEEEEe
Q 038577          596 ILAGGSSKYICMYDVADQVLLRRFQ  620 (860)
Q Consensus       596 l~~~~~dg~v~vwd~~~~~~~~~~~  620 (860)
                      +++-...+.|..+|..+|+.+..+.
T Consensus       304 ywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          304 FWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             EEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             EEecCCCCeEEEEEcCCCCceEEEe
Confidence            5555667889999988887776654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.49  E-value=4.6e-05  Score=80.22  Aligned_cols=236  Identities=11%  Similarity=0.083  Sum_probs=145.7

Q ss_pred             eeEEEEEeeC--CCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCC
Q 038577          308 KITTAVFNEL--GNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDN-----KVKVWTVSS  380 (860)
Q Consensus       308 ~i~~~~~s~~--~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~  380 (860)
                      ....++++|+  +..|.++... +.|+.++..++...... ........++++++|+ |+++...+     .+..++...
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred             CCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence            4568899984  5566666555 88999999877765543 3445688999999999 44444321     233333322


Q ss_pred             Cee-EEEeecCCCceEEEEEee-CCCEEEEEeCCCcEEEEEccccceee-EeeCCCCCcEEEEEECCCCCEEEEEecCCC
Q 038577          381 GFC-FVTFTEHTNAVTALHFMA-NNHSLLSASLDGTVRAWDLFRYRNFR-TFTTPSSRQFVSLASDQSGEVICAGTLDSF  457 (860)
Q Consensus       381 ~~~-~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  457 (860)
                      +.. ...+. .-.....++++| ++..+++-..++.|+.++..++.... .+..........++++|+|+.|+++....+
T Consensus       217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~  295 (433)
T 4hw6_A          217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH  295 (433)
T ss_dssp             TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred             Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence            211 11121 234566788999 66666666667889999987666522 223222223357999999998888877766


Q ss_pred             eEEEEECC--CCce--EEEecCc---------------ccCeEEEEE---------cCCCCEEEEEeCCCcEEEEEccCC
Q 038577          458 EIFVWSMK--TGRL--LDILSGH---------------EGPVHGLVF---------SPTNATLASSSWDKTVRLWNVFEG  509 (860)
Q Consensus       458 ~i~v~d~~--~~~~--~~~~~~h---------------~~~v~~l~~---------s~~~~~l~s~~~dg~i~iwd~~~~  509 (860)
                      .|+.++..  ++..  ...+.+.               -.....+++         .+++.+.++-...+.|+.++. ++
T Consensus       296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G  374 (433)
T 4hw6_A          296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG  374 (433)
T ss_dssp             EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred             EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence            99998865  3322  1122111               123677999         667776666666788998884 44


Q ss_pred             cceeEEccc------------------CCCeEEEEEe-eCCCEEEEEeCCCeEEEEeCC
Q 038577          510 KGSVESFPH------------------THDVLTVVYR-PDGRQLACSTLDGQIHFWDPL  549 (860)
Q Consensus       510 ~~~~~~~~~------------------~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~  549 (860)
                      . +..+.+.                  -.....++++ ++|.++++-..++.|+.++++
T Consensus       375 ~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          375 R-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             E-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             C-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            3 3222211                  1236789999 566555555556778877653

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.49  E-value=0.0015  Score=65.52  Aligned_cols=284  Identities=14%  Similarity=0.106  Sum_probs=187.9

Q ss_pred             CcEEEeCCCEEEeee----CCeEEEEECCCCcEE-eeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEe
Q 038577           16 GNAVLSQNTKLISPV----GNRVSVTDLIKSKTV-TLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRV   90 (860)
Q Consensus        16 ~~~~~sdg~~l~~~~----~~~i~v~d~~~~~~~-~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~   90 (860)
                      +++.+...++++.-.    ++.|.|.|+.++... ..+..-    -+.-.+|..+.||.-. ..++.|+|+++.+.+..+
T Consensus        28 ~~~TmESDkyicVrE~~~~~~~vvIiDl~~~~~~~rrpi~A----dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~  102 (494)
T 1bpo_A           28 STLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH  102 (494)
T ss_dssp             TTEEEEETTEEEEEECCTTCCEEEEEETTSTTSCEEEECCC----SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred             ceeeeecCceEEEEecCCCCCeEEEEECCCCCcceeccccc----ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcce
Confidence            355666556777643    357999999987653 222222    2455788888887654 689999999999999999


Q ss_pred             ecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeecc----CCCeEEEEEcCCCCeEEEee------
Q 038577           91 RFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADC----NDKVTALNWSPDSNYLLVGS------  160 (860)
Q Consensus        91 ~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~s~d~~~l~s~~------  160 (860)
                      ....+|..=.|-. .+.|+...+..|+-|++.+...      +...+..|    ...|..-..++|.++++..|      
T Consensus       103 ~~~e~VvfWkWis-~~~l~lVT~taVyHWsi~~~s~------P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~  175 (494)
T 1bpo_A          103 TMTDDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQ------PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQN  175 (494)
T ss_dssp             ECSSCCCEEEEEE-TTEEEEECSSEEEEEESSSSCC------CEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETT
T ss_pred             ecCCCceEEEecC-CCeEEEEcCCeeEEecccCCCC------chhheecchhcccceEEEEEECCCCCeEEEEeecccCC
Confidence            8888888777763 4577888899999999986433      23444433    34577788899999887643      


Q ss_pred             -cCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCC---ccEEEeeecCCCCCCccccCC
Q 038577          161 -KDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARD---CYMFSWGFSGNDGKIDETMED  236 (860)
Q Consensus       161 -~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~d---g~i~~w~~~~~~~~~~~~~~~  236 (860)
                       -.|.+.+|..+..       ....+.||.+....+.+.  |.......+..+.+.   +.+.+-++.....        
T Consensus       176 ~v~G~mQLYS~er~-------~sQ~ieGhaa~F~~~~~~--g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~--------  238 (494)
T 1bpo_A          176 RVVGAMQLYSVDRK-------VSQPIEGHAASFAQFKME--GNAEESTLFCFAVRGQAGGKLHIIEVGTPPT--------  238 (494)
T ss_dssp             EEEEEEEEEESTTC-------CEEEECCSEEEEEEEECT--TCSSEEEEEEEEECSTTCCEEEEEECSCCCT--------
T ss_pred             cccceEEEeecccc-------ccchheeeeeeeEEEecC--CCCCCceEEEEEEecCCCcEEEEEEcCCCcc--------
Confidence             2477889988876       567788888776554443  322222234444332   6788887754210        


Q ss_pred             CCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEee
Q 038577          237 SEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNE  316 (860)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~  316 (860)
                          .....  ..+.-++  ........+-..++..++.-..++.-+.-|.+.+||+.++.++..-+...+.|...+...
T Consensus       239 ----~~~~f--~kk~vdv--~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~  310 (494)
T 1bpo_A          239 ----GNQPF--PKKAVDV--FFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHE  310 (494)
T ss_dssp             ----TCCCC--CCEEEEC--CCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET
T ss_pred             ----CCCCc--cceeeee--eCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccC
Confidence                00000  0001100  011112345678899999999999999999999999999999999888888887777666


Q ss_pred             CCCEEEEEEccCCcEEEEEcc
Q 038577          317 LGNWLVFGCAKLGQLLVWEWR  337 (860)
Q Consensus       317 ~~~~l~~~~~~~g~i~v~d~~  337 (860)
                      ...-++..... |.|.--.+.
T Consensus       311 ~~~Gi~~Vnr~-GqVl~v~v~  330 (494)
T 1bpo_A          311 ATAGIIGVNRK-GQVLSVCVE  330 (494)
T ss_dssp             TTTEEEEEETT-CEEEEEEEC
T ss_pred             CCCcEEEEccC-ceEEEEEEc
Confidence            66666555543 655544443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.49  E-value=2.7e-05  Score=88.96  Aligned_cols=242  Identities=10%  Similarity=-0.000  Sum_probs=136.4

Q ss_pred             eeEEEEEe-eCCCEEEEEEccCC----cEEEEEccCc-eEEEEecCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEE
Q 038577          308 KITTAVFN-ELGNWLVFGCAKLG----QLLVWEWRSE-SYILKQQGHYFDVNCLAYSPDSQLLATGADD-----NKVKVW  376 (860)
Q Consensus       308 ~i~~~~~s-~~~~~l~~~~~~~g----~i~v~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw  376 (860)
                      .+...+|| |||++++++...+|    .|+++|+.++ +.+..  .-......++|+|||+.|+....+     ..|+.+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            57789999 99999998877644    4999999988 63211  001113468899999988877664     258888


Q ss_pred             ECCCCee--EEEee-cCCCceEEEEEeeCCCEEEEEeC---CCcEEEEEccccc-ee--eEeeCCCCCcEEEEEECCCCC
Q 038577          377 TVSSGFC--FVTFT-EHTNAVTALHFMANNHSLLSASL---DGTVRAWDLFRYR-NF--RTFTTPSSRQFVSLASDQSGE  447 (860)
Q Consensus       377 d~~~~~~--~~~~~-~~~~~v~~i~~~~~~~~l~s~~~---dg~i~~wd~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~  447 (860)
                      ++.++..  ...+. ........+.|+|||++|+..+.   ...|.++|+.++. ..  +.+.........++.++. |.
T Consensus       253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~  331 (751)
T 2xe4_A          253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TS  331 (751)
T ss_dssp             ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TT
T ss_pred             ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CC
Confidence            8877642  22222 22334678899999998886653   3358888887652 22  333322222334444333 55


Q ss_pred             EEE-EEecC---CCeEEEEECCCC-ceEEEecCccc--CeEEEEEcCCCCEEEEEeCCCcE--EEEEc-------cCCcc
Q 038577          448 VIC-AGTLD---SFEIFVWSMKTG-RLLDILSGHEG--PVHGLVFSPTNATLASSSWDKTV--RLWNV-------FEGKG  511 (860)
Q Consensus       448 ~l~-~~~~~---~~~i~v~d~~~~-~~~~~~~~h~~--~v~~l~~s~~~~~l~s~~~dg~i--~iwd~-------~~~~~  511 (860)
                      .++ .+..+   ...|+.+|+.++ +....+..|..  .+..+.+. .+.++++...++..  .++++       .+++.
T Consensus       332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~  410 (751)
T 2xe4_A          332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTG  410 (751)
T ss_dssp             EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTC
T ss_pred             EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEecccccccccCCcc
Confidence            444 44333   237888888753 32220222333  34555554 23445566667754  45554       23320


Q ss_pred             eeEE-cccCCCeEEEEE----eeCCC-EEEEEeCC---CeEEEEeCCCCce
Q 038577          512 SVES-FPHTHDVLTVVY----RPDGR-QLACSTLD---GQIHFWDPLNGEL  553 (860)
Q Consensus       512 ~~~~-~~~~~~v~~~~~----s~~~~-~l~~~~~d---g~i~iwd~~~~~~  553 (860)
                      ...+ ......+..+.+    ++++. ++++.+..   +.++.+|+.+++.
T Consensus       411 ~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~  461 (751)
T 2xe4_A          411 LREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR  461 (751)
T ss_dssp             CEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred             ceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence            2222 112222333332    34555 44444333   4588888887763

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.42  E-value=0.0064  Score=69.77  Aligned_cols=464  Identities=8%  Similarity=0.011  Sum_probs=258.0

Q ss_pred             CCCEEEeeeCCeEEEEECCCCcEEeecc----CCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeec-----
Q 038577           22 QNTKLISPVGNRVSVTDLIKSKTVTLPV----ESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRF-----   92 (860)
Q Consensus        22 dg~~l~~~~~~~i~v~d~~~~~~~~~~~----~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~-----   92 (860)
                      +| .|-.+..+.|..||..+++......    -....|.++...++|.+.+. +. +-+..++..+++.......     
T Consensus       112 ~g-~lWigt~~Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~  188 (758)
T 3ott_A          112 GD-TLWLGALNGLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVG-TY-NGLCRYIPSNGKFEGIPLPVHSSQ  188 (758)
T ss_dssp             TT-EEEEEETTEEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEE-ET-TEEEEEETTTTEEEEECCCCCTTC
T ss_pred             CC-cEEEEcCCcceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEE-eC-CCHhhCccCCCceEEecCCCcccc
Confidence            55 4555555689999998877654411    12346889988888886664 33 3577888877664322111     


Q ss_pred             -CCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeec
Q 038577           93 -KYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVK  171 (860)
Q Consensus        93 -~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~  171 (860)
                       ...|.++...+++..|.++.++-+..++..+++..     ....+  ....|.++...++|.+.+ |+.+ -+.+++..
T Consensus       189 ~~~~i~~i~~d~~~~~lWigt~~Gl~~~~~~~~~~~-----~~~~l--~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~  259 (758)
T 3ott_A          189 SNLFVNSLLEDTTRQCVWIGTEGYLFQYFPSTGQIK-----QTEAF--HNNSIKSLALDGNGDLLA-GTDN-GLYVYHND  259 (758)
T ss_dssp             SSCCEEEEEEETTTTEEEEEEEEEEEEEETTTTEEE-----EEEEE--EEEEEEEEEECTTCCEEE-EETT-EEEEECCT
T ss_pred             ccceeEEEEEECCCCEEEEEECCCCeEEcCCCCeEE-----eccCC--CCCeEEEEEEcCCCCEEE-EeCC-ceeEEecC
Confidence             12378888887776555554456888888765421     11112  134588888888776544 4444 57778766


Q ss_pred             ccccCcccccceEee--------cCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCC
Q 038577          172 EKLKGIHTNKPFLLL--------GHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPG  243 (860)
Q Consensus       172 ~~~~~~~~~~~~~~~--------~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~  243 (860)
                      +. .      ...+.        -....|.++....++.      |-.++..| +.+..... ..               
T Consensus       260 ~~-~------~~~~~~~~~~~~~l~~~~i~~i~~D~~g~------lWiGT~~G-l~~~~~~~-~~---------------  309 (758)
T 3ott_A          260 TT-P------LQHIIHDSRNIQSLTNNIIWNIFADQEHN------IWLGTDYG-ISLSRYNS-AL---------------  309 (758)
T ss_dssp             TS-C------CEEECCCTTCTTSCSCSCEEEEEECTTCC------EEEEESSS-EEEECCCC--C---------------
T ss_pred             CC-c------EEEEEcCCCCcCcCCcCeEEEEEEcCCCC------EEEEeCCc-ccccccCC-ce---------------
Confidence            54 1      11111        1234588887777664      66666666 44332211 00               


Q ss_pred             CCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCce--eEEEEe-------ecCceeEEEEE
Q 038577          244 TPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFV--CIHLLS-------ISREKITTAVF  314 (860)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~--~~~~~~-------~~~~~i~~~~~  314 (860)
                            ..+... ...-......|.++....+|.+. +|+.+| +..++..++.  ....+.       .....|.++.-
T Consensus       310 ------~~~~~~-~~~~~~~~~~v~~i~~D~~g~lW-iGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~  380 (758)
T 3ott_A          310 ------QFIPIS-QITGTGDGNQFYSLFRDSKGFYW-FGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYE  380 (758)
T ss_dssp             ------EEEEHH-HHSCSCCCCBEEEEEECTTCCEE-EEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEE
T ss_pred             ------eEEecc-cCCCCCCCceEEEEEEcCCCCEE-EeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEE
Confidence                  011000 00001123468888888877654 455555 5566654421  111121       11235777777


Q ss_pred             eeCCCEEEEEEccCCcEEEEEccCceEEEEec-C-----cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-----Cee
Q 038577          315 NELGNWLVFGCAKLGQLLVWEWRSESYILKQQ-G-----HYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS-----GFC  383 (860)
Q Consensus       315 s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~-~-----~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-----~~~  383 (860)
                      .++|+.-+ ++ . +-+..|+..+++...... .     ....|.++...++|. |-.|+..+-+.++|..+     ...
T Consensus       381 d~~g~lWi-gt-~-~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~~~~~~~  456 (758)
T 3ott_A          381 DKEQQLWI-AT-D-GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLMQSTSGQ  456 (758)
T ss_dssp             CTTSCEEE-EE-T-TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHHHHHCCSSE
T ss_pred             CCCCCEEE-Ee-C-CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCC-EEEEECCCceEEEccccccccCCcc
Confidence            77776544 43 3 678999988876543221 1     224578888777775 55577666788888542     111


Q ss_pred             E---EEeec----CCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCC--CCCcEEEEEECCCCCEEEEEec
Q 038577          384 F---VTFTE----HTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTP--SSRQFVSLASDQSGEVICAGTL  454 (860)
Q Consensus       384 ~---~~~~~----~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~  454 (860)
                      .   ..+..    ....|.++...++|+..+.++..+-+..+|..+.+........  ....+.++..+.+|.+.+.. .
T Consensus       457 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~  535 (758)
T 3ott_A          457 YIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-H  535 (758)
T ss_dssp             EECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-T
T ss_pred             eecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-c
Confidence            1   11111    1235888988888876654455566888998765543321111  12357788888888877554 4


Q ss_pred             CCCeEEEEECCCCceEEE-ecC-cccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEe-eCC
Q 038577          455 DSFEIFVWSMKTGRLLDI-LSG-HEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-PDG  531 (860)
Q Consensus       455 ~~~~i~v~d~~~~~~~~~-~~~-h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-~~~  531 (860)
                      +  -+..||..+++.... ..+ ....|.++... +| .|..++..| +..+|..+.+.. ........+....+. ++|
T Consensus       536 ~--Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g-~lWi~t~~G-l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~G  609 (758)
T 3ott_A          536 G--GVMRINPKDESQQSISFGSFSNNEILSMTCV-KN-SIWVSTTNG-LWIIDRKTMDAR-QQNMTNKRFTSLLFDPKED  609 (758)
T ss_dssp             T--EEEEECC--CCCCBCCCCC---CCEEEEEEE-TT-EEEEEESSC-EEEEETTTCCEE-EC--CCCCCSEEEEETTTT
T ss_pred             C--ceEEEecCCCceEEecccCCCccceEEEEEC-CC-CEEEECCCC-eEEEcCCCceeE-EecCCCCceeeeEEECCCC
Confidence            3  488898776543221 111 13457777764 55 455555566 778888766522 111122223344444 355


Q ss_pred             CEEEEEeCCCeEEEEeCC
Q 038577          532 RQLACSTLDGQIHFWDPL  549 (860)
Q Consensus       532 ~~l~~~~~dg~i~iwd~~  549 (860)
                       .|..|+.+| +..++..
T Consensus       610 -~l~fG~~~G-l~~f~p~  625 (758)
T 3ott_A          610 -CVYLGGADG-FGISHSN  625 (758)
T ss_dssp             -EEEEECBSE-EEEEEC-
T ss_pred             -cEEEecCCc-eEEEChh
Confidence             566777777 5566664

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.40  E-value=0.00028  Score=74.26  Aligned_cols=253  Identities=11%  Similarity=0.077  Sum_probs=146.0

Q ss_pred             cCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCC-----cEEEEEccc
Q 038577          350 FDVNCLAYSPD--SQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDG-----TVRAWDLFR  422 (860)
Q Consensus       350 ~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg-----~i~~wd~~~  422 (860)
                      .....++++|+  +..|..+...+.|+.++..++...... .....+..++++++++ |+.+...+     .+...+...
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence            34678999984  445666555589999998877665443 3556689999999999 54444321     133333222


Q ss_pred             cce-eeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEe-c-CcccCeEEEEEcCCCCEEEEEe-CC
Q 038577          423 YRN-FRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDIL-S-GHEGPVHGLVFSPTNATLASSS-WD  498 (860)
Q Consensus       423 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~-~-~h~~~v~~l~~s~~~~~l~s~~-~d  498 (860)
                      ... ...+.  .......++++|++..|+++....+.|+.+|..++.....+ . +....-..++|+|++++|..+. ..
T Consensus       217 ~~~~~~~~~--~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~  294 (433)
T 4hw6_A          217 GFTERLSLC--NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK  294 (433)
T ss_dssp             TTCCEEEEE--ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred             Ceecccccc--ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence            111 01111  12234668899944445555544449999999878763322 2 1122334799999999655554 56


Q ss_pred             CcEEEEEccC--Ccc--eeEEcc---------------cCCCeEEEEE---------eeCCCEEEEEeCCCeEEEEeCCC
Q 038577          499 KTVRLWNVFE--GKG--SVESFP---------------HTHDVLTVVY---------RPDGRQLACSTLDGQIHFWDPLN  550 (860)
Q Consensus       499 g~i~iwd~~~--~~~--~~~~~~---------------~~~~v~~~~~---------s~~~~~l~~~~~dg~i~iwd~~~  550 (860)
                      +.|+.++...  +..  ...+.+               .-.....+++         .++|.+.++-...+.|+.++. +
T Consensus       295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~  373 (433)
T 4hw6_A          295 HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-E  373 (433)
T ss_dssp             TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-T
T ss_pred             CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-C
Confidence            7899988653  211  011111               1123677899         667766666666788999985 5


Q ss_pred             CceeEEEeccccc-CCCccccccccccccCCCCcEEEEEEe-cCCCEEEEecCCCeEEEEECC
Q 038577          551 GELMYTIEGRRDI-SGGRLMTDRRSAANSSSGKCFTTLCYS-ADGSYILAGGSSKYICMYDVA  611 (860)
Q Consensus       551 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~~~~dg~v~vwd~~  611 (860)
                      |. +.++.+.... ..+.  .+. .......-.....++++ ++|.++++-...+.|+.++++
T Consensus       374 G~-v~t~~G~g~~~~~G~--~dG-~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          374 GR-VTTYAGRGNSREWGY--VDG-ELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             SE-EEEEECCCTTCSSCC--BCE-ETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CC-EEEEEeCCCCCcccc--CCC-ccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            64 3344332110 0000  000 00001112347899999 677766666667888887764

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.39  E-value=0.00022  Score=74.75  Aligned_cols=259  Identities=11%  Similarity=0.038  Sum_probs=150.9

Q ss_pred             CeEEEEEcCC-CCEEEEE-eCCCcEEEEECCCCeeEEEeecC---CCceEEEEE-------eeCCCEEEEEeCCC-c---
Q 038577          351 DVNCLAYSPD-SQLLATG-ADDNKVKVWTVSSGFCFVTFTEH---TNAVTALHF-------MANNHSLLSASLDG-T---  414 (860)
Q Consensus       351 ~v~~~~~s~~-~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~i~~-------~~~~~~l~s~~~dg-~---  414 (860)
                      ....|+|+|. +..|+++ ...+.|++.|+.++.........   ...+..++|       +++++.|+++...+ .   
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            4678999983 4444444 44467999998877766554332   235899999       99998777776554 2   


Q ss_pred             ---EEEEEccc-ccee-----eEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECC-------CCce---------
Q 038577          415 ---VRAWDLFR-YRNF-----RTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK-------TGRL---------  469 (860)
Q Consensus       415 ---i~~wd~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~-------~~~~---------  469 (860)
                         +.+++... +...     +.+.  .......++++|++..|+++....+.|+.+|+.       ++..         
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~--~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~  297 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIA--AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP  297 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEE--EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred             CceEEEEecCCCCceeecccceeec--cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence               55555333 1111     1222  112345778899777777666666599999997       5553         


Q ss_pred             --EEE-ec-CcccCeEEEEEcCCCCEEEEE-eCCCcEEEEEccCCcc-e---eEEccc---------------CCCeE-E
Q 038577          470 --LDI-LS-GHEGPVHGLVFSPTNATLASS-SWDKTVRLWNVFEGKG-S---VESFPH---------------THDVL-T  524 (860)
Q Consensus       470 --~~~-~~-~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~-~---~~~~~~---------------~~~v~-~  524 (860)
                        ... +. +.......++|+|+|++|..+ +..+.|+.++...... +   ..+.+.               -.... .
T Consensus       298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g  377 (496)
T 3kya_A          298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG  377 (496)
T ss_dssp             TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred             cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence              112 11 223456899999999965554 4567888876543221 1   111111               11234 4


Q ss_pred             EEEe-------eCCCEEEEEeCCCeEEEEeCCCCceeEEEeccccc-------CCCccccccccccccCCCCcEEEEEEe
Q 038577          525 VVYR-------PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI-------SGGRLMTDRRSAANSSSGKCFTTLCYS  590 (860)
Q Consensus       525 ~~~s-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~l~~s  590 (860)
                      ++..       ++|.++++-..+..|+.++ .+| .+.++-+....       ..+..  +- .......-.....|+++
T Consensus       378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G-~v~TiaG~g~~~~~~~~~~~G~~--dG-~~~~~a~f~~P~gIavd  452 (496)
T 3kya_A          378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEG-IVSTYAGRGASTSLADGNQWGTD--DG-DLREVARFRDVSGLVYD  452 (496)
T ss_dssp             EEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTC-BEEEEEESCTTHHHHHSCSCCCC--CE-ETTTTCCCSSEEEEEEE
T ss_pred             EEEccccccccCCCeEEEEECCCCEEEEEe-CCC-CEEEEecccccccccCccccccC--CC-CchhhhhcCCCcEEEEE
Confidence            4554       4566666656778899999 466 45555543210       00000  00 00111122347899999


Q ss_pred             cC-CCEEEEecCCCeEEEEECCCceEE
Q 038577          591 AD-GSYILAGGSSKYICMYDVADQVLL  616 (860)
Q Consensus       591 ~~-g~~l~~~~~dg~v~vwd~~~~~~~  616 (860)
                      ++ |.+.++=.....|+.++++....+
T Consensus       453 ~~~g~lyVaD~~N~rIrki~~~~~~~~  479 (496)
T 3kya_A          453 DVKEMFYVHDQVGHTIRTISMEQEENV  479 (496)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCccc
Confidence            97 776666667788999888776544

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.37  E-value=0.00089  Score=67.65  Aligned_cols=275  Identities=9%  Similarity=0.045  Sum_probs=152.1

Q ss_pred             CCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEE-eeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeec
Q 038577           93 KYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRT-LADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVK  171 (860)
Q Consensus        93 ~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~  171 (860)
                      ...+.+|.|.+++..+|++..+.| +...+.++ .   +..+.. .......+.++.|.+ +. +..++.++.|.. ..+
T Consensus        35 ~~~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~-t---W~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~D  106 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLVGVNATL-METRDGGQ-T---WEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTD  106 (327)
T ss_dssp             SSCEEEEEESSSSCEEEEETTTEE-EEESSTTS-S---CEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESS
T ss_pred             CCcEEEEEECCCCcEEEEcCCCeE-EEeCCCCC-C---CeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECC
Confidence            457899999988888888877765 33344443 1   211111 111244688899986 44 444456664433 222


Q ss_pred             ccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeee
Q 038577          172 EKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKK  251 (860)
Q Consensus       172 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (860)
                      .+..-   ........+.+.+..+.+.+++.     .++ ++.++.+.  ....+.                      ..
T Consensus       107 gG~tW---~~~~~~~~~~~~~~~i~~~~~~~-----~~~-~~~~g~v~--~S~DgG----------------------~t  153 (327)
T 2xbg_A          107 GGQSW---SQIPLDPKLPGSPRLIKALGNGS-----AEM-ITNVGAIY--RTKDSG----------------------KN  153 (327)
T ss_dssp             TTSSC---EECCCCTTCSSCEEEEEEEETTE-----EEE-EETTCCEE--EESSTT----------------------SS
T ss_pred             CCCCc---eECccccCCCCCeEEEEEECCCC-----EEE-EeCCccEE--EEcCCC----------------------CC
Confidence            23111   11111112334567788777664     444 44555442  222211                      25


Q ss_pred             EEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEEC--CCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCC
Q 038577          252 WGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQM--PDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLG  329 (860)
Q Consensus       252 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g  329 (860)
                      |.....    .....+..+.+.|++.+++++...+..+-.|-  .+.+.+.  ......+..+.+.+++..++++ . +|
T Consensus       154 W~~~~~----~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~-~-~G  225 (327)
T 2xbg_A          154 WQALVQ----EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIV-N-GG  225 (327)
T ss_dssp             EEEEEC----SCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEE-T-TT
T ss_pred             CEEeec----CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEe-C-Cc
Confidence            655432    23446889999999887766654433333332  2223221  2334578888899988766544 3 37


Q ss_pred             cEEEEEccCceEEEEec-C---cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeec---CCCceEEEEEeeC
Q 038577          330 QLLVWEWRSESYILKQQ-G---HYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTE---HTNAVTALHFMAN  402 (860)
Q Consensus       330 ~i~v~d~~~~~~~~~~~-~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~i~~~~~  402 (860)
                      .+++.+...+..-.... .   +...+.++++.+++..++++. +|.+ .+..+.++.-..+..   ....+.++.|.++
T Consensus       226 ~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~  303 (327)
T 2xbg_A          226 KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSP  303 (327)
T ss_dssp             EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEET
T ss_pred             eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECC
Confidence            77766433233222221 1   223588999998887776655 5666 445555555444432   2456788888765


Q ss_pred             CCEEEEEeCCCcEEEEE
Q 038577          403 NHSLLSASLDGTVRAWD  419 (860)
Q Consensus       403 ~~~l~s~~~dg~i~~wd  419 (860)
                      + .+++++.+|.|.-++
T Consensus       304 ~-~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          304 D-QGFILGQKGILLRYV  319 (327)
T ss_dssp             T-EEEEECSTTEEEEEC
T ss_pred             C-ceEEEcCCceEEEEc
Confidence            5 577778889776655

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.33  E-value=0.0028  Score=64.00  Aligned_cols=273  Identities=10%  Similarity=0.050  Sum_probs=152.3

Q ss_pred             CCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceE
Q 038577          189 RDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVT  268 (860)
Q Consensus       189 ~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  268 (860)
                      ...+.++.|.+++.     .++ ++.+|.|. ...+.+                       +.|...... .......+.
T Consensus        35 ~~~~~~v~~~~~~~-----~~~-~G~~g~i~-~s~DgG-----------------------~tW~~~~~~-~~~~~~~~~   83 (327)
T 2xbg_A           35 TATILDMSFIDRHH-----GWL-VGVNATLM-ETRDGG-----------------------QTWEPRTLV-LDHSDYRFN   83 (327)
T ss_dssp             SSCEEEEEESSSSC-----EEE-EETTTEEE-EESSTT-----------------------SSCEECCCC-CSCCCCEEE
T ss_pred             CCcEEEEEECCCCc-----EEE-EcCCCeEE-EeCCCC-----------------------CCCeECCCC-CCCCCccEE
Confidence            34688888876665     555 55667553 222222                       145443211 111234688


Q ss_pred             EEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEee---cCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc-eEEEE
Q 038577          269 ACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSI---SREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE-SYILK  344 (860)
Q Consensus       269 ~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~-~~~~~  344 (860)
                      .+.+.+ +. +++++..|.|.. ..+.++.-.....   ....+..+.+.+++..++++ .. |.+..- ...+ .....
T Consensus        84 ~i~~~~-~~-~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~-g~v~~S-~DgG~tW~~~  157 (327)
T 2xbg_A           84 SVSFQG-NE-GWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NV-GAIYRT-KDSGKNWQAL  157 (327)
T ss_dssp             EEEEET-TE-EEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TT-CCEEEE-SSTTSSEEEE
T ss_pred             EEEecC-Ce-EEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CC-ccEEEE-cCCCCCCEEe
Confidence            888876 44 444456665443 3333333232221   12356777777777655544 33 544322 1222 22222


Q ss_pred             ecCcccCeEEEEEcCCCCEEEEEeCCCcEEE-EEC--CCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcc
Q 038577          345 QQGHYFDVNCLAYSPDSQLLATGADDNKVKV-WTV--SSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLF  421 (860)
Q Consensus       345 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i-wd~--~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~  421 (860)
                      .......+..+++.+++.+++++.. |.+.. .|-  .+.+.+.  ......+..+.+.+++..+ .++.+|.+...+..
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~g~~-G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D  233 (327)
T 2xbg_A          158 VQEAIGVMRNLNRSPSGEYVAVSSR-GSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPD  233 (327)
T ss_dssp             ECSCCCCEEEEEECTTSCEEEEETT-SSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETT
T ss_pred             ecCCCcceEEEEEcCCCcEEEEECC-CcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCC
Confidence            2345567889999999888777654 44443 342  2223321  2345678899998888654 55667887776433


Q ss_pred             ccceeeEeeCC---CCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC---cccCeEEEEEcCCCCEEEEE
Q 038577          422 RYRNFRTFTTP---SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG---HEGPVHGLVFSPTNATLASS  495 (860)
Q Consensus       422 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~---h~~~v~~l~~s~~~~~l~s~  495 (860)
                      .++....+..+   ....+..+.+.+++..++++. ++ .+ .+....|+.-..+..   +...+.++.|.+++. ++.+
T Consensus       234 ~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g-~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~  309 (327)
T 2xbg_A          234 NSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AG-AL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFIL  309 (327)
T ss_dssp             EEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TT-CE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEE
T ss_pred             CCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CC-eE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEE
Confidence            34444433333   223578888998888777765 33 45 344555554444432   345678898875554 6666


Q ss_pred             eCCCcEEEEEc
Q 038577          496 SWDKTVRLWNV  506 (860)
Q Consensus       496 ~~dg~i~iwd~  506 (860)
                      +.+|.|.-++-
T Consensus       310 G~~G~i~~~~~  320 (327)
T 2xbg_A          310 GQKGILLRYVT  320 (327)
T ss_dssp             CSTTEEEEECC
T ss_pred             cCCceEEEEcC
Confidence            77897776653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.31  E-value=0.00087  Score=75.66  Aligned_cols=228  Identities=10%  Similarity=-0.056  Sum_probs=145.7

Q ss_pred             cCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc----eEEEEecCcccCeEEEEEcC
Q 038577          284 SNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE----SYILKQQGHYFDVNCLAYSP  359 (860)
Q Consensus       284 ~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~----~~~~~~~~~~~~v~~~~~s~  359 (860)
                      ....|+..++........ ......+..++|.+.+..|+.+....+.|+.+++...    .....+.........|++.+
T Consensus       402 n~~~Ir~i~l~~~~~~~l-~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~  480 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSL-IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW  480 (791)
T ss_dssp             CBSSEEEECTTSCCCEEE-ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred             cccceeEeeccCCcceee-ecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence            345677778765544333 3345577899999988888888777788998888753    22233333445567899998


Q ss_pred             CCCEEE-EEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeC-C-CcEEEEEccccceeeEeeCCCCCc
Q 038577          360 DSQLLA-TGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASL-D-GTVRAWDLFRYRNFRTFTTPSSRQ  436 (860)
Q Consensus       360 ~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-d-g~i~~wd~~~~~~~~~~~~~~~~~  436 (860)
                      .+..|+ +-...+.|.+.++........+...-....+|++.|.+..|+.+.. . +.|...++.. .....+.......
T Consensus       481 ~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG-~~~~~lv~~~l~~  559 (791)
T 3m0c_C          481 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQW  559 (791)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSC
T ss_pred             cCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC-CceEEEEeCCCCC
Confidence            775555 4455788999998755444444444556899999997656655543 2 6788888754 3334444444456


Q ss_pred             EEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC--cccCeEEEEEcCCCCEEEEE-eCCCcEEEEEccCCccee
Q 038577          437 FVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG--HEGPVHGLVFSPTNATLASS-SWDKTVRLWNVFEGKGSV  513 (860)
Q Consensus       437 ~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~  513 (860)
                      ...+++++.+..|+.+......|..+++........+..  .-....+|++.  +..|+.+ ...+.|...|..+++...
T Consensus       560 P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~  637 (791)
T 3m0c_C          560 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVN  637 (791)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred             ceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceE
Confidence            789999998888888877766999999975544444432  22334566663  3344444 445677777766665443


Q ss_pred             EE
Q 038577          514 ES  515 (860)
Q Consensus       514 ~~  515 (860)
                      .+
T Consensus       638 ~l  639 (791)
T 3m0c_C          638 LL  639 (791)
T ss_dssp             EE
T ss_pred             Ee
Confidence            33

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.30  E-value=0.00026  Score=69.83  Aligned_cols=200  Identities=17%  Similarity=0.287  Sum_probs=130.9

Q ss_pred             CCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECC----CCC---EEEEEecC--CCeEEEEEC--CCCceE
Q 038577          402 NNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQ----SGE---VICAGTLD--SFEIFVWSM--KTGRLL  470 (860)
Q Consensus       402 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~l~~~~~~--~~~i~v~d~--~~~~~~  470 (860)
                      ....++.....+-+.+||+ +++.++.+...   .+..+.+-|    .|+   ++++...+  ..+|.+|++  .+++ +
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g---~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l  113 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNTG---KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L  113 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECCS---CEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccCC---CcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence            3456666677789999999 88888887542   344444433    222   34445554  459999976  3443 4


Q ss_pred             EEecC------cc-cCeEEEEE--cCC-CC-EEEEEeCCCcEEEEEccC---Cc---ceeEEcccCCCeEEEEEeeCCCE
Q 038577          471 DILSG------HE-GPVHGLVF--SPT-NA-TLASSSWDKTVRLWNVFE---GK---GSVESFPHTHDVLTVVYRPDGRQ  533 (860)
Q Consensus       471 ~~~~~------h~-~~v~~l~~--s~~-~~-~l~s~~~dg~i~iwd~~~---~~---~~~~~~~~~~~v~~~~~s~~~~~  533 (860)
                      ..+..      .. ..+..+++  +|. ++ +++....+|.+..|++..   +.   .....+...+.+-.++..+....
T Consensus       114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~  193 (355)
T 3amr_A          114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGR  193 (355)
T ss_dssp             EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTE
T ss_pred             eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCe
Confidence            44421      11 55667787  774 44 577788899999999843   21   12233445678899999999999


Q ss_pred             EEEEeCCCeEEEEeCC-----CCceeEEEecccccCCCccccccccccccCCCCcEEEEEE--ecCCC-EEEEec-CCCe
Q 038577          534 LACSTLDGQIHFWDPL-----NGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCY--SADGS-YILAGG-SSKY  604 (860)
Q Consensus       534 l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--s~~g~-~l~~~~-~dg~  604 (860)
                      |+++-++.-|..|+..     +++.+..+....-                  ...+..|++  .++|+ ||++++ .+.+
T Consensus       194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l------------------~aDvEGLai~~~~~g~gyLivSsQG~~s  255 (355)
T 3amr_A          194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHL------------------TRDIEGLTIYYAADGKGYLMASSQGNSS  255 (355)
T ss_dssp             EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSB------------------CSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred             EEEecccceEEEEeCCcCCCCCceEEEEecCCcc------------------ccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence            9999998777777754     3444444322110                  013788887  56666 777776 5679


Q ss_pred             EEEEECC-CceEEEEEeeccc
Q 038577          605 ICMYDVA-DQVLLRRFQITHN  624 (860)
Q Consensus       605 v~vwd~~-~~~~~~~~~~~~~  624 (860)
                      +.+||.. +.+.+..|....+
T Consensus       256 ~~Vydr~~~~~~vg~f~Ig~~  276 (355)
T 3amr_A          256 YAIYDRQGKNKYVADFRITDG  276 (355)
T ss_dssp             EEEEESSTTCCEEEEEEECCC
T ss_pred             EEEEECCCCCcEEEEEEecCC
Confidence            9999997 7788888876543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.28  E-value=0.00047  Score=72.35  Aligned_cols=245  Identities=11%  Similarity=0.055  Sum_probs=148.7

Q ss_pred             eeEEEEEee-CCCEEEEEEccCCcEEEEEccCceEEEEecC---cccCeEEEEE-------cCCCCEEEEEeCCC-----
Q 038577          308 KITTAVFNE-LGNWLVFGCAKLGQLLVWEWRSESYILKQQG---HYFDVNCLAY-------SPDSQLLATGADDN-----  371 (860)
Q Consensus       308 ~i~~~~~s~-~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~---~~~~v~~~~~-------s~~~~~l~~~~~dg-----  371 (860)
                      ....++|+| ++..|+++....+.|++.|.+++........   .......++|       +++|..|+++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            467889998 4666666665547788999888777655433   2235789999       99999676666544     


Q ss_pred             --cEEEEECCC-CeeE-----EEeecCCCceEEEEEeeC-CCEEEEEeCCCcEEEEEcc-------ccce----------
Q 038577          372 --KVKVWTVSS-GFCF-----VTFTEHTNAVTALHFMAN-NHSLLSASLDGTVRAWDLF-------RYRN----------  425 (860)
Q Consensus       372 --~i~iwd~~~-~~~~-----~~~~~~~~~v~~i~~~~~-~~~l~s~~~dg~i~~wd~~-------~~~~----------  425 (860)
                        .|.+++... +...     ..+... .....++++|+ +..+++-..++.|..+|+.       ++..          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              266665333 1211     222221 23457788995 4555566677889999997       4443          


Q ss_pred             -e-eEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECC--CCce--EEEecCc---c------------cCeE-EE
Q 038577          426 -F-RTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK--TGRL--LDILSGH---E------------GPVH-GL  483 (860)
Q Consensus       426 -~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~--~~~~--~~~~~~h---~------------~~v~-~l  483 (860)
                       . ..+..+.......++++|+|++|+++....+.|+.++..  ++..  ...+-+.   .            .... .+
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv  378 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV  378 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence             1 223344444568999999999888887777799996653  3322  0222111   1            1234 44


Q ss_pred             EEc-------CCCCEEEEEeCCCcEEEEEccCCcceeEEccc------------------------CCCeEEEEEeeC-C
Q 038577          484 VFS-------PTNATLASSSWDKTVRLWNVFEGKGSVESFPH------------------------THDVLTVVYRPD-G  531 (860)
Q Consensus       484 ~~s-------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------------~~~v~~~~~s~~-~  531 (860)
                      +..       +++.+.++-...+.|+.++ .++. +..+.+.                        -.....|+++++ |
T Consensus       379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g  456 (496)
T 3kya_A          379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE  456 (496)
T ss_dssp             EEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred             EEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence            554       4566666656677888888 3443 3333211                        123678888886 6


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeE
Q 038577          532 RQLACSTLDGQIHFWDPLNGELMY  555 (860)
Q Consensus       532 ~~l~~~~~dg~i~iwd~~~~~~~~  555 (860)
                      .++++=..+..|+.+++.......
T Consensus       457 ~lyVaD~~N~rIrki~~~~~~~~~  480 (496)
T 3kya_A          457 MFYVHDQVGHTIRTISMEQEENVA  480 (496)
T ss_dssp             EEEEEETTTTEEEEEEECCCC---
T ss_pred             EEEEEeCCCCEEEEEECCCCcccc
Confidence            555555556778888876655444

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.25  E-value=0.0016  Score=73.45  Aligned_cols=209  Identities=11%  Similarity=-0.004  Sum_probs=136.8

Q ss_pred             CCceEEEEecCCCCEEEEE-EcCCeEEEEECCCc----eeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccC
Q 038577          264 PSKVTACDYHRGLDMVVVG-FSNGVFGLYQMPDF----VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRS  338 (860)
Q Consensus       264 ~~~v~~~~~~~~~~~l~~~-~~~g~i~~~~~~~~----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~  338 (860)
                      ...+..+++++....|+.. ...+.|+.+++...    .....+.........+++.+.+..|+.+....+.|.+.++..
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            3467889999866665544 45578888888642    223333334456788999999988988888789999999986


Q ss_pred             ceEEEEecCcccCeEEEEEcCCCCEEEEEeC-C-CcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEe-CCCcE
Q 038577          339 ESYILKQQGHYFDVNCLAYSPDSQLLATGAD-D-NKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSAS-LDGTV  415 (860)
Q Consensus       339 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d-g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~i  415 (860)
                      ......+.........|++.|.+..|+.... . +.|...++........+...-.....|++++.+..|+.+. ..+.|
T Consensus       503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I  582 (791)
T 3m0c_C          503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  582 (791)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcE
Confidence            6544444444456889999998666666553 2 6788888865444444443446789999997766666554 45678


Q ss_pred             EEEEccccceeeEeeCC-CCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec
Q 038577          416 RAWDLFRYRNFRTFTTP-SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS  474 (860)
Q Consensus       416 ~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~  474 (860)
                      ..+++........+... .-....++++  .+..|+.+....+.|...|..+|+.+..+.
T Consensus       583 ~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          583 SSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDVNLLA  640 (791)
T ss_dssp             EEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence            88888554433333321 1223455665  344676766666688888877776655553

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.22  E-value=0.00053  Score=67.58  Aligned_cols=195  Identities=9%  Similarity=0.093  Sum_probs=128.4

Q ss_pred             CCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEee----CCCE--E-EEEEcc--CCcEEEEEcc--CceEEE
Q 038577          275 GLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNE----LGNW--L-VFGCAK--LGQLLVWEWR--SESYIL  343 (860)
Q Consensus       275 ~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~----~~~~--l-~~~~~~--~g~i~v~d~~--~~~~~~  343 (860)
                      ...+++.....+-+.+||+ +++.++.+..  +.+..+..-|    .|+.  + +++...  +++|.+|++.  ++. +.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~  114 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ  114 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence            4455666667789999999 8888888754  4566666655    2332  3 444444  5889999773  433 33


Q ss_pred             EecC------cc-cCeEEEEE--cCC-CC-EEEEEeCCCcEEEEECC-------CCeeEEEeecCCCceEEEEEeeCCCE
Q 038577          344 KQQG------HY-FDVNCLAY--SPD-SQ-LLATGADDNKVKVWTVS-------SGFCFVTFTEHTNAVTALHFMANNHS  405 (860)
Q Consensus       344 ~~~~------~~-~~v~~~~~--s~~-~~-~l~~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~v~~i~~~~~~~~  405 (860)
                      .+..      .. ..+..+++  +|. +. ++++...+|.+..|++.       +.+.++++.. .+.+..+...+....
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~  193 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGR  193 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTE
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCe
Confidence            3311      11 45666777  774 43 67778888999999883       3355666654 467888999988889


Q ss_pred             EEEEeCCCcEEEEEcc-----ccceeeEeeCCC-CCcEEEEEE--CCCCC-EEEEEecCCCeEEEEECC-CCceEEEec
Q 038577          406 LLSASLDGTVRAWDLF-----RYRNFRTFTTPS-SRQFVSLAS--DQSGE-VICAGTLDSFEIFVWSMK-TGRLLDILS  474 (860)
Q Consensus       406 l~s~~~dg~i~~wd~~-----~~~~~~~~~~~~-~~~~~~~~~--~~~~~-~l~~~~~~~~~i~v~d~~-~~~~~~~~~  474 (860)
                      |+.+-.+..|..++..     +.+.+..+.... ...+..+++  .++++ +|++++.......+||.+ +.+.+..+.
T Consensus       194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            9999998777777754     233443333221 235677776  56666 788887665699999996 555555553

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.14  E-value=0.0017  Score=63.38  Aligned_cols=202  Identities=11%  Similarity=0.100  Sum_probs=130.6

Q ss_pred             CcccCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEeecC-----C--CceEEEEE---eeCCCEEEEEe-----
Q 038577          347 GHYFDVNCLAYSPDSQLLATGA-DDNKVKVWTVSSGFCFVTFTEH-----T--NAVTALHF---MANNHSLLSAS-----  410 (860)
Q Consensus       347 ~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-----~--~~v~~i~~---~~~~~~l~s~~-----  410 (860)
                      ....-..+++|.+....+..++ ..++|..|+...+.........     .  ..+..+.|   .|+++.+++..     
T Consensus        10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af   89 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF   89 (334)
T ss_dssp             CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred             CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence            3334456789988666666666 6899999998766443332222     1  13679999   58877766543     


Q ss_pred             --------CCCcEEEEEcc---ccceeeEeeCC------------CCCcEEEEEECCCCCEEEEEecC-CCeEEEEECCC
Q 038577          411 --------LDGTVRAWDLF---RYRNFRTFTTP------------SSRQFVSLASDQSGEVICAGTLD-SFEIFVWSMKT  466 (860)
Q Consensus       411 --------~dg~i~~wd~~---~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~-~~~i~v~d~~~  466 (860)
                              .+..+..||+.   +++........            .......++.+++|+..++++.. + .|..++...
T Consensus        90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~-~I~rV~pdG  168 (334)
T 2p9w_A           90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMP-AIARVSADG  168 (334)
T ss_dssp             CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSC-EEEEECTTS
T ss_pred             cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCC-eEEEEeCCC
Confidence                    26779999998   77776655532            22347899999999999988877 6 888888764


Q ss_pred             CceEEEec------CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcce-eEEc--c---cCCCeEEE-EEeeCCCE
Q 038577          467 GRLLDILS------GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGS-VESF--P---HTHDVLTV-VYRPDGRQ  533 (860)
Q Consensus       467 ~~~~~~~~------~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~--~---~~~~v~~~-~~s~~~~~  533 (860)
                      . .+..+.      ......+.|+++|+|..|+.....|.+..+|+...... ....  +   .......+ ..-.+|+.
T Consensus       169 ~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~v  247 (334)
T 2p9w_A          169 K-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNES  247 (334)
T ss_dssp             C-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEE
T ss_pred             C-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEE
Confidence            4 333221      11223679999999999888877999999998854320 1111  1   11223443 33347887


Q ss_pred             EEE-EeCCCeEEEEeCCC
Q 038577          534 LAC-STLDGQIHFWDPLN  550 (860)
Q Consensus       534 l~~-~~~dg~i~iwd~~~  550 (860)
                      |++ ....+.+.+.+.+.
T Consensus       248 llV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          248 VLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             EEEEEETTEEEEEECSST
T ss_pred             EEEEcCCCCEEEEECCCC
Confidence            444 44566666666544

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.12  E-value=0.01  Score=59.56  Aligned_cols=232  Identities=9%  Similarity=0.051  Sum_probs=143.4

Q ss_pred             CCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEE
Q 038577          370 DNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVI  449 (860)
Q Consensus       370 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  449 (860)
                      +..|.|.|+.++..+....-   .--+.-.+|..+.++.-. ...+.+||+.+...++.+..+..  +.-..|-. .+.|
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~--VvfWkWis-~~~l  119 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD--VTFWKWIS-LNTV  119 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSC--CCEEEEEE-TTEE
T ss_pred             CCeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCC--ceEEEecC-CCeE
Confidence            34788889887554322211   112345678777776655 67899999999998888887653  33333332 2345


Q ss_pred             EEEecCCCeEEEEECCC-CceEEEecCcc----cCeEEEEEcCCCCEEEEEeC-------CCcEEEEEccCCcceeEEcc
Q 038577          450 CAGTLDSFEIFVWSMKT-GRLLDILSGHE----GPVHGLVFSPTNATLASSSW-------DKTVRLWNVFEGKGSVESFP  517 (860)
Q Consensus       450 ~~~~~~~~~i~v~d~~~-~~~~~~~~~h~----~~v~~l~~s~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~  517 (860)
                      +..+..  .|+-|++.. ..+.+.+..|.    ..|..-..+++.+|++..+-       .|.+.+|..+... ...+.+
T Consensus       120 ~lVT~t--aVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieG  196 (494)
T 1bpo_A          120 ALVTDN--AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG  196 (494)
T ss_dssp             EEECSS--EEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECC
T ss_pred             EEEcCC--eeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchhee
Confidence            555444  799999974 45677776653    46777888999999875442       4778899987664 445555


Q ss_pred             cCCCeEEEEEeeC---CCEEEEEeC---CCeEEEEeCCCCc-eeEEEecccccCCCccccccccccccCCCCcEEEEEEe
Q 038577          518 HTHDVLTVVYRPD---GRQLACSTL---DGQIHFWDPLNGE-LMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYS  590 (860)
Q Consensus       518 ~~~~v~~~~~s~~---~~~l~~~~~---dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  590 (860)
                      |...-..+.+.-+   ...++.+..   .+.++|-++.... --..+.         ..................++..|
T Consensus       197 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~---------kk~vdv~fppe~~~DFPvamqvs  267 (494)
T 1bpo_A          197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP---------KKAVDVFFPPEAQNDFPVAMQIS  267 (494)
T ss_dssp             SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCC---------CEEEECCCCTTSTTCCEEEEEEE
T ss_pred             eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCcc---------ceeeeeeCCcccccCceeEEEec
Confidence            6544333322211   123333333   2678888874320 000000         00001111112334557889999


Q ss_pred             cCCCEEEEecCCCeEEEEECCCceEEEEEe
Q 038577          591 ADGSYILAGGSSKYICMYDVADQVLLRRFQ  620 (860)
Q Consensus       591 ~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~  620 (860)
                      +.-..+.....-|.|.+||++++.++..-+
T Consensus       268 ~kygviyviTK~G~i~lyDleTgt~i~~nr  297 (494)
T 1bpo_A          268 EKHDVVFLITKYGYIHLYDLETGTCIYMNR  297 (494)
T ss_dssp             TTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ccCCEEEEEecCceEEEEecccceeeeeec
Confidence            999999999999999999999999986544

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.99  E-value=0.0057  Score=60.30  Aligned_cols=254  Identities=11%  Similarity=0.089  Sum_probs=146.6

Q ss_pred             ceecccccccccCCcEEEeCCCEEEeee---CCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCC------
Q 038577            3 YRFQNLLGAPYRGGNAVLSQNTKLISPV---GNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDEN------   73 (860)
Q Consensus         3 ~~~~~~~g~~~~~~~~~~sdg~~l~~~~---~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d------   73 (860)
                      +...|..|-++++|.+++ +|++|++..   ++.|...+........+.. .    .+--++++|++|+.+...      
T Consensus         6 ~~~gn~~~Ni~n~g~~~~-~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~-~----~~~~i~~~g~~Iyy~~~~~~~~~~   79 (302)
T 3s25_A            6 YVNGNTAGNLYNAGLFCE-SDGEVFFSNTNDNGRLYAMNIDGSNIHKLSN-D----TAMYINADKNYVYYVRNNNQKITS   79 (302)
T ss_dssp             CCBSSCTTTGGGTTCEEE-ETTEEEEEEGGGTTEEEEEETTSCSCEEEEE-E----EEEEEEECSSEEEEEEECC-----
T ss_pred             CCCCccccceecceEEEE-eCCEEEEEeCCCCceEEEEcCCCCCCEEccC-C----ceeeEEEcCCEEEEEECCCCcccc
Confidence            344566777788888665 777888764   5778888887766555542 1    234568999999988653      


Q ss_pred             --------CcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEe---C--CeEEEEeCCCCCcccceeEEEEEeecc
Q 038577           74 --------QRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGT---G--KLVQIWRSPGFKKEVFAFELIRTLADC  140 (860)
Q Consensus        74 --------~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~---~--~~i~iwd~~~~~~~~~~~~~~~~~~~h  140 (860)
                              ..|+..++..++......  .  .+..|++++++|+...   +  ..|+..++.+...        ..+..+
T Consensus        80 ~~~~~~n~~~Iy~i~~dg~~~~~l~~--~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~--------~~lt~~  147 (302)
T 3s25_A           80 QTFFSYDRNSLCRIKRNGHGSTVLDP--D--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK--------KKIKNH  147 (302)
T ss_dssp             -CCSSCCSEEEEEEETTSCCCEEEEC--S--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC--------EEEESS
T ss_pred             cceeccCCCeEEEEeCCCCcceEeec--C--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe--------EEEeCC
Confidence                    356677777665333222  2  2347888999999875   3  4566666665442        344444


Q ss_pred             CCCeEEEEEcCCCCeEEEeec-CCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCc--c
Q 038577          141 NDKVTALNWSPDSNYLLVGSK-DLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDC--Y  217 (860)
Q Consensus       141 ~~~v~~l~~s~d~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg--~  217 (860)
                      ..    .+|+|+++.|+-.+. ...|.+-+++..      .......   +... ..+.|++.     .|+-....+  .
T Consensus       148 ~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~------~~~~l~~---~~~~-~~~~P~g~-----~iy~t~~~~~~~  208 (302)
T 3s25_A          148 YL----FTCNTSDRYFYYNNPKNGQLYRYDTASQ------SEALFYD---CNCY-KPVVLDDT-----NVYYMDVNRDNA  208 (302)
T ss_dssp             CC----CCSEEETTEEEEECTTTCCEEEEETTTT------EEEEEEC---SCEE-EEEEEETT-----EEEEEEGGGTTE
T ss_pred             Cc----eEeeEECCEEEEEeCCCceEEEEECCCC------CEEEEeC---CCcc-ceeeecCC-----EEEEEEcCCCcE
Confidence            32    467888988886655 466777676655      2222222   2222 23568887     777665443  4


Q ss_pred             EEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEc--CCeEEEEECCC
Q 038577          218 MFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFS--NGVFGLYQMPD  295 (860)
Q Consensus       218 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~g~i~~~~~~~  295 (860)
                      |..-++++...                             ..+.  ...+  ..++|++++|+....  .+.|...++..
T Consensus       209 I~~~~ldG~~~-----------------------------~~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG  255 (302)
T 3s25_A          209 IVHVNINNPNP-----------------------------VVLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG  255 (302)
T ss_dssp             EEEECSSSCCC-----------------------------EECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred             EEEEECCCCCe-----------------------------EEEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence            54445544321                             1111  1122  237788888876533  36777777743


Q ss_pred             ceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcE
Q 038577          296 FVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQL  331 (860)
Q Consensus       296 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i  331 (860)
                       ...+.+...  .+.  .+++.+.++..+....+.|
T Consensus       256 -~~r~~l~~~--~~~--~i~i~~d~Iy~td~~~~~i  286 (302)
T 3s25_A          256 -TGFKELAKG--EFC--NINVTSQYVYFTDFVSNKE  286 (302)
T ss_dssp             -CCCEEEEES--CEE--EEEECSSEEEEEETTTCCE
T ss_pred             -CccEEeeCC--ccc--eEEEeCCEEEEEECCCCeE
Confidence             333333322  122  4556677776665443443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.93  E-value=2.1e-05  Score=88.40  Aligned_cols=227  Identities=10%  Similarity=-0.041  Sum_probs=135.9

Q ss_pred             CCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccC----ceEEEEecCcccCeEEEEEcCC
Q 038577          285 NGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRS----ESYILKQQGHYFDVNCLAYSPD  360 (860)
Q Consensus       285 ~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~----~~~~~~~~~~~~~v~~~~~s~~  360 (860)
                      .+.|+..++...+....+. ....+..++|.+.+..|+.+....+.|+.+++..    ......+.........+++.+.
T Consensus       385 ~~~I~~id~~~~~~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             TTC-CEECTTSCCEECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             ccceEEEeCCCCcceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            3567777776554433322 2345678999998888888877778999998875    1211111111223456888754


Q ss_pred             CC-EEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeC--CCcEEEEEccccceeeEeeCCCCCcE
Q 038577          361 SQ-LLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASL--DGTVRAWDLFRYRNFRTFTTPSSRQF  437 (860)
Q Consensus       361 ~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~  437 (860)
                      +. ++++-...+.|.++++........+.........+++.|.+..|+.+..  .+.|..+++... ....+........
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~P  542 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWP  542 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSSC
T ss_pred             CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCCc
Confidence            44 4444445678999998755444433333356778899986655554432  267777776432 2222322223345


Q ss_pred             EEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec--CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeE
Q 038577          438 VSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS--GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVE  514 (860)
Q Consensus       438 ~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~  514 (860)
                      ..++++|++..|+++......|..+++........+.  ........|++..+ .++++....+.|..++..+++....
T Consensus       543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~  620 (699)
T 1n7d_A          543 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNL  620 (699)
T ss_dssp             CCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEEC
T ss_pred             cEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEE
Confidence            7899999888777777766699999987543333322  11233445666543 3444555567899888777664433

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.92  E-value=0.0089  Score=60.83  Aligned_cols=232  Identities=11%  Similarity=0.072  Sum_probs=121.2

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE--EEee---cCCCceEEEEEeeC---CCEEEEEeC-C-----CcE
Q 038577          350 FDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCF--VTFT---EHTNAVTALHFMAN---NHSLLSASL-D-----GTV  415 (860)
Q Consensus       350 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~---~~~~~v~~i~~~~~---~~~l~s~~~-d-----g~i  415 (860)
                      .....++|.|+|++++ +..+|.|++++  ++...  ..+.   ........++++|+   +..|+.+.. .     +.|
T Consensus        31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            3467899999998555 45669999998  44322  1111   12356889999998   445544433 2     567


Q ss_pred             EEEEccccc-----e-eeEee--CCCCCcEEEEEECCCCCEEEEEecC------------CCeEEEEECCCC--------
Q 038577          416 RAWDLFRYR-----N-FRTFT--TPSSRQFVSLASDQSGEVICAGTLD------------SFEIFVWSMKTG--------  467 (860)
Q Consensus       416 ~~wd~~~~~-----~-~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~i~v~d~~~~--------  467 (860)
                      ..|+.....     . ...+.  .........++++|+|.+.++.+..            .+.|.-++....        
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~  187 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL  187 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence            778776431     1 11122  1112234689999999765553321            136777776530        


Q ss_pred             -----ceEEEecCcccCeEEEEEcC-CCCEEEEEeCCCcE------EEEEccCCc-----------------ceeEEccc
Q 038577          468 -----RLLDILSGHEGPVHGLVFSP-TNATLASSSWDKTV------RLWNVFEGK-----------------GSVESFPH  518 (860)
Q Consensus       468 -----~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i------~iwd~~~~~-----------------~~~~~~~~  518 (860)
                           .......+|. ....++|+| ++.++++-...+.+      .+.-+..+.                 .......+
T Consensus       188 ~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~  266 (352)
T 2ism_A          188 GRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQ  266 (352)
T ss_dssp             TCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred             CCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCC
Confidence                 1111112332 356789999 66655554333321      233222222                 01111122


Q ss_pred             CCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEE
Q 038577          519 THDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILA  598 (860)
Q Consensus       519 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~  598 (860)
                      ......++| .+|.++++.-..+.|...+++..............           .   .....+..+++.|||.+.++
T Consensus       267 ~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~-----------~---~~~~rp~~v~~~pdG~lyv~  331 (352)
T 2ism_A          267 GFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETA-----------L---SGFGRLREVQVGPDGALYVT  331 (352)
T ss_dssp             CCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEE-----------E---ESSCCEEEEEECTTSCEEEE
T ss_pred             CCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchhee-----------c---ccCCCeeEEEECCCCcEEEE
Confidence            334567777 46666555555566766666533211000000000           0   00135899999999987766


Q ss_pred             ec
Q 038577          599 GG  600 (860)
Q Consensus       599 ~~  600 (860)
                      ..
T Consensus       332 ~~  333 (352)
T 2ism_A          332 TS  333 (352)
T ss_dssp             EC
T ss_pred             Ee
Confidence            54

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.91  E-value=0.0019  Score=63.12  Aligned_cols=158  Identities=7%  Similarity=0.040  Sum_probs=109.8

Q ss_pred             CCCceEEEEEeeCCCEEEEEe-CCCcEEEEEccccceeeEeeCCC-------CCcEEEEEE---CCCCCEEEEEec----
Q 038577          390 HTNAVTALHFMANNHSLLSAS-LDGTVRAWDLFRYRNFRTFTTPS-------SRQFVSLAS---DQSGEVICAGTL----  454 (860)
Q Consensus       390 ~~~~v~~i~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~-------~~~~~~~~~---~~~~~~l~~~~~----  454 (860)
                      ...-..++.|.+....+..++ ..++|..|+...+..... ..+.       ...+..+.+   +|+++++++...    
T Consensus        11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af   89 (334)
T 2p9w_A           11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF   89 (334)
T ss_dssp             TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred             cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence            334455788987555666555 789999999875544333 2222       224678999   688888776442    


Q ss_pred             ---------CCCeEEEEECC---CCceEEEec--Cc-----------ccCeEEEEEcCCCCEEEEEeCC-CcEEEEEccC
Q 038577          455 ---------DSFEIFVWSMK---TGRLLDILS--GH-----------EGPVHGLVFSPTNATLASSSWD-KTVRLWNVFE  508 (860)
Q Consensus       455 ---------~~~~i~v~d~~---~~~~~~~~~--~h-----------~~~v~~l~~s~~~~~l~s~~~d-g~i~iwd~~~  508 (860)
                               +. .+..||+.   +++.+....  ..           .....+++..++|+..++++.. +.|...+...
T Consensus        90 ~~~g~~~~g~~-~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG  168 (334)
T 2p9w_A           90 NFADQSSHGAS-SFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG  168 (334)
T ss_dssp             CTTSCCSSSCC-EEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred             cccccccCCCC-EEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence                     34 79999999   787765443  11           1247899999999999988887 7777766554


Q ss_pred             CcceeEEc------ccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCC
Q 038577          509 GKGSVESF------PHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLN  550 (860)
Q Consensus       509 ~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  550 (860)
                      .. ...+.      ......+.++++|+|+.|++....|.+..+|+.+
T Consensus       169 ~~-~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          169 KT-VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             CC-EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CE-EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            32 22221      1122367999999999999987799999999874

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.87  E-value=8.4e-05  Score=83.49  Aligned_cols=231  Identities=11%  Similarity=-0.026  Sum_probs=136.1

Q ss_pred             CCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEE-eCCCcEEEEEcccc---ceeeEeeCCCCCcEEEEEECCC
Q 038577          370 DNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSA-SLDGTVRAWDLFRY---RNFRTFTTPSSRQFVSLASDQS  445 (860)
Q Consensus       370 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~-~~dg~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~  445 (860)
                      .+.|+..++........+. ....+.+++|.+.+..|+.+ ...+.|..+++...   .....+..........+++++.
T Consensus       385 ~~~I~~id~~~~~~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             TTC-CEECTTSCCEECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             ccceEEEeCCCCcceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            3578888887665544333 33456789999876666555 45578999988651   1111111111223456888876


Q ss_pred             CCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeC-C-CcEEEEEccCCcceeEEcccCCCeE
Q 038577          446 GEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSW-D-KTVRLWNVFEGKGSVESFPHTHDVL  523 (860)
Q Consensus       446 ~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-d-g~i~iwd~~~~~~~~~~~~~~~~v~  523 (860)
                      +..|+++....+.|.++++........+.........+++.|.+.+|+.+.. . +.|..+++............-....
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~Pn  543 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN  543 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCC
T ss_pred             CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCcc
Confidence            6666666555558999998765544444333355678999997665554443 2 6788887754432221112234567


Q ss_pred             EEEEeeCCCEEEEEe-CCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCC
Q 038577          524 TVVYRPDGRQLACST-LDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSS  602 (860)
Q Consensus       524 ~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d  602 (860)
                      .|+|+|++..|+.+. ..+.|..+++........+.....                  ......|++..+ .++++....
T Consensus       544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~------------------~~~P~glavd~~-~lywtd~~~  604 (699)
T 1n7d_A          544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR------------------LAHPFSLAVFED-KVFWTDIIN  604 (699)
T ss_dssp             CEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSS------------------CSSCCCCEEETT-EEEEECSTT
T ss_pred             EEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCc------------------CCCceEeEEECC-EEEEEeCCC
Confidence            899999866665554 567899999864332222211100                  011344555443 344455567


Q ss_pred             CeEEEEECCCceEEEEEe
Q 038577          603 KYICMYDVADQVLLRRFQ  620 (860)
Q Consensus       603 g~v~vwd~~~~~~~~~~~  620 (860)
                      +.|..++..+|+.+..+.
T Consensus       605 ~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          605 EAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             TCEEEEETTTEEEEECCC
T ss_pred             CeEEEEEccCCCceEEee
Confidence            899999998998776553

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.87  E-value=0.0062  Score=62.04  Aligned_cols=238  Identities=11%  Similarity=0.071  Sum_probs=123.2

Q ss_pred             cCCcEEEe-CCCEEEeeeCCeEEEEECCCCcEEee-----ccCCccCeeEEEEcCC---CCEEEEEcC-C-----CcEEE
Q 038577           14 RGGNAVLS-QNTKLISPVGNRVSVTDLIKSKTVTL-----PVESSSNICRIAVSPD---GTFLLTVDE-N-----QRCHF   78 (860)
Q Consensus        14 ~~~~~~~s-dg~~l~~~~~~~i~v~d~~~~~~~~~-----~~~h~~~v~~va~spd---g~~la~~~~-d-----~~i~v   78 (860)
                      ....++|. ||+++++-..+.|.+++  +++...+     ..........|+|+||   +.+|.++.. .     +.|..
T Consensus        32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r  109 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR  109 (352)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred             CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence            34468999 99977776678999998  4543221     1122456889999998   555544432 2     67888


Q ss_pred             EEcccCe-----EE-EEeec----CCceeEEEECCCCCEEEEEeC--------------CeEEEEeCCCCCccccee---
Q 038577           79 INLHCHV-----VL-HRVRF----KYPVNAILFSPNGKYIAVGTG--------------KLVQIWRSPGFKKEVFAF---  131 (860)
Q Consensus        79 wd~~~~~-----~~-~~~~~----~~~v~~~~fspdg~~la~~~~--------------~~i~iwd~~~~~~~~~~~---  131 (860)
                      ++...+.     .+ ..+..    ......++|.|||.+.++..+              +.|.-++..+.-....++   
T Consensus       110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~  189 (352)
T 2ism_A          110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGR  189 (352)
T ss_dssp             EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTC
T ss_pred             EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCC
Confidence            8876442     11 21221    123468999999976665422              456666655410000000   


Q ss_pred             ---EEEEEeeccCCCeEEEEEcC-CCCeEEEeecCCeE------EEEeecccccCcc------------cccceEeecCC
Q 038577          132 ---ELIRTLADCNDKVTALNWSP-DSNYLLVGSKDLAV------RLFYVKEKLKGIH------------TNKPFLLLGHR  189 (860)
Q Consensus       132 ---~~~~~~~~h~~~v~~l~~s~-d~~~l~s~~~dg~v------~vwd~~~~~~~~~------------~~~~~~~~~h~  189 (860)
                         .......+|. ....++|+| ++.+.++-.....+      .+.-+..+...-+            ......+ .+.
T Consensus       190 ~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-~~~  267 (352)
T 2ism_A          190 RGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-PQG  267 (352)
T ss_dssp             TTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-TTC
T ss_pred             CCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-CCC
Confidence               0001112333 357889999 55544443222221      2333333310000            0112222 233


Q ss_pred             CcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEE
Q 038577          190 DSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTA  269 (860)
Q Consensus       190 ~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  269 (860)
                      .....++| .++.     .+++.-..+.|...+++....                      .+.......+......+..
T Consensus       268 ~ap~G~~~-~~G~-----l~v~~~~~~~v~~v~~~~~~~----------------------~~~~~~~~~~~~~~~rp~~  319 (352)
T 2ism_A          268 FPPGNLAF-FRGD-----LYVAGLRGQALLRLVLEGERG----------------------RWRVLRVETALSGFGRLRE  319 (352)
T ss_dssp             CCEEEEEE-ETTE-----EEEEETTTTEEEEEEEEEETT----------------------EEEEEEEEEEEESSCCEEE
T ss_pred             CCCcceEE-ECCE-----EEEEECCCCEEEEEEECCCCc----------------------ceeecchheecccCCCeeE
Confidence            45667777 4555     555555666777777664321                      1111101111122357899


Q ss_pred             EEecCCCCEEEEEE
Q 038577          270 CDYHRGLDMVVVGF  283 (860)
Q Consensus       270 ~~~~~~~~~l~~~~  283 (860)
                      +++.|+|.+.++..
T Consensus       320 v~~~pdG~lyv~~~  333 (352)
T 2ism_A          320 VQVGPDGALYVTTS  333 (352)
T ss_dssp             EEECTTSCEEEEEC
T ss_pred             EEECCCCcEEEEEe
Confidence            99999997666554

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.80  E-value=0.013  Score=59.54  Aligned_cols=250  Identities=10%  Similarity=0.035  Sum_probs=127.8

Q ss_pred             ceecccccccccCCcEEEe-CCCEEEeeeCCeEEEEECCCCc-EEee---ccCCccCeeEEEEcCC---CCEEEEEcC--
Q 038577            3 YRFQNLLGAPYRGGNAVLS-QNTKLISPVGNRVSVTDLIKSK-TVTL---PVESSSNICRIAVSPD---GTFLLTVDE--   72 (860)
Q Consensus         3 ~~~~~~~g~~~~~~~~~~s-dg~~l~~~~~~~i~v~d~~~~~-~~~~---~~~h~~~v~~va~spd---g~~la~~~~--   72 (860)
                      |+...+.......-.++|. ||+++++-..+.|.+++ .+++ ....   ..........|+++|+   +.+|.++..  
T Consensus        19 ~~~~~va~~l~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~   97 (354)
T 3a9g_A           19 FKISEVASDLEVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYF   97 (354)
T ss_dssp             EEEEEEECSCSCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEE
T ss_pred             eEEEEEeCCCCCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEecc
Confidence            4444433333344468999 99877777778999997 4554 1111   1122356889999998   444444332  


Q ss_pred             --C----CcEEEEEcccC-------eEE-EEee--cCCceeEEEECCCCCEEEEEeC--------------CeEEEEeCC
Q 038577           73 --N----QRCHFINLHCH-------VVL-HRVR--FKYPVNAILFSPNGKYIAVGTG--------------KLVQIWRSP  122 (860)
Q Consensus        73 --d----~~i~vwd~~~~-------~~~-~~~~--~~~~v~~~~fspdg~~la~~~~--------------~~i~iwd~~  122 (860)
                        +    +.|..|+...+       +.+ ..+.  .......++|.|||.+.++..+              +.|.-++..
T Consensus        98 ~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d  177 (354)
T 3a9g_A           98 AEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE  177 (354)
T ss_dssp             CGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT
T ss_pred             CCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC
Confidence              3    56777876654       111 2222  1123568999999987666432              356666654


Q ss_pred             CCCccccee-EEEEEeeccCCCeEEEEEcC-CCCeEEEeec-CCeEEEEeecccccCc------------ccccceEeec
Q 038577          123 GFKKEVFAF-ELIRTLADCNDKVTALNWSP-DSNYLLVGSK-DLAVRLFYVKEKLKGI------------HTNKPFLLLG  187 (860)
Q Consensus       123 ~~~~~~~~~-~~~~~~~~h~~~v~~l~~s~-d~~~l~s~~~-dg~v~vwd~~~~~~~~------------~~~~~~~~~~  187 (860)
                      +.-....++ .......+|.. ...++|+| ++++.++-.. ++.-.|.-+..+...-            .......+..
T Consensus       178 G~~p~~npf~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~  256 (354)
T 3a9g_A          178 GRPPADNPFPNSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGS  256 (354)
T ss_dssp             SCCCTTSSSTTCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred             CCCCCCCCCCCCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCC
Confidence            321000000 00011234433 47899999 5654444222 2111222222221000            0011122212


Q ss_pred             CCCcEEEEEEc-------cCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccc
Q 038577          188 HRDSVVGCFFS-------VDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDF  260 (860)
Q Consensus       188 h~~~i~~~~~~-------~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (860)
                      .......++|.       .++.     ++++.-..+.|...+++....                    ...    ....+
T Consensus       257 ~~~ap~G~~~y~g~~fp~~~G~-----l~v~~~~~~~v~~~~~~~~g~--------------------~~~----~~~~~  307 (354)
T 3a9g_A          257 ETWAPSGASFVHGDMFPGLRGW-----LLIACLRGSMLAAVNFGDNME--------------------VRK----ISTFF  307 (354)
T ss_dssp             CCCCEEEEEECCSSSCGGGTTE-----EEEEETTTTEEEEEEECGGGC--------------------EEE----EEEEC
T ss_pred             CCcCCcceEEECCCCCcccCCc-----EEEEEcCCCEEEEEEECCCCc--------------------ccc----eeeec
Confidence            23457788884       3454     666666667777777764210                    000    01112


Q ss_pred             cCCCCceEEEEecCCCCEEEEEE
Q 038577          261 SQAPSKVTACDYHRGLDMVVVGF  283 (860)
Q Consensus       261 ~~~~~~v~~~~~~~~~~~l~~~~  283 (860)
                      ......+..+++.|||.+.++..
T Consensus       308 ~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          308 KNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             TTTSCCEEEEEECTTSCEEEEEC
T ss_pred             cCCCCCeeEEEECCCCcEEEEEe
Confidence            22345789999999997665553

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.74  E-value=0.024  Score=57.56  Aligned_cols=229  Identities=13%  Similarity=0.007  Sum_probs=126.1

Q ss_pred             CceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce-EEEEec---CcccCeEEEEEcCC---CCEEEEEeC----C----
Q 038577          306 REKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES-YILKQQ---GHYFDVNCLAYSPD---SQLLATGAD----D----  370 (860)
Q Consensus       306 ~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~-~~~~~~---~~~~~v~~~~~s~~---~~~l~~~~~----d----  370 (860)
                      -.....++|.|+|+.+ ++... |.|.+++. ++. .+..+.   ........++++|+   +..|.++..    +    
T Consensus        28 l~~P~~ia~~pdG~l~-V~e~~-g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYL-VTERP-GRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             CSCEEEEEEEETTEEE-EEETT-TEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred             CCCCeEEEEcCCCeEE-EEeCC-CEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence            3467899999999844 44444 89999873 444 222211   12345789999997   455554443    2    


Q ss_pred             CcEEEEECCCC-------eeE-EEeec-CCCceEEEEEeeCCCEEEEEeCC-------------CcEEEEEccccc----
Q 038577          371 NKVKVWTVSSG-------FCF-VTFTE-HTNAVTALHFMANNHSLLSASLD-------------GTVRAWDLFRYR----  424 (860)
Q Consensus       371 g~i~iwd~~~~-------~~~-~~~~~-~~~~v~~i~~~~~~~~l~s~~~d-------------g~i~~wd~~~~~----  424 (860)
                      +.|..|+....       +.+ ..+.. .......++|.|||..+++.+..             |.|..++....-    
T Consensus       105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n  184 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN  184 (354)
T ss_dssp             EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred             eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence            56777876643       111 11221 11234679999999876665432             345444443210    


Q ss_pred             ---eeeEeeCCCCCcEEEEEECC-CCCEEEEEecCC--CeEEEEECCC----------------CceEEEecCcccCeEE
Q 038577          425 ---NFRTFTTPSSRQFVSLASDQ-SGEVICAGTLDS--FEIFVWSMKT----------------GRLLDILSGHEGPVHG  482 (860)
Q Consensus       425 ---~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~--~~i~v~d~~~----------------~~~~~~~~~h~~~v~~  482 (860)
                         ....+... ......++++| +|.++++-...+  ..|.+.....                ..++..+.........
T Consensus       185 pf~~~~i~a~G-~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G  263 (354)
T 3a9g_A          185 PFPNSPIWSYG-HRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG  263 (354)
T ss_dssp             SSTTCCEEEEC-CSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred             CCCCCcEEEEc-cCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence               01111111 12346789999 666555533322  1344432110                0122333112345778


Q ss_pred             EEEc-------CCCCEEEEEeCCCcEEEEEccCCcce---eEEcc-cCCCeEEEEEeeCCCEEEEEe
Q 038577          483 LVFS-------PTNATLASSSWDKTVRLWNVFEGKGS---VESFP-HTHDVLTVVYRPDGRQLACST  538 (860)
Q Consensus       483 l~~s-------~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~-~~~~v~~~~~s~~~~~l~~~~  538 (860)
                      ++|.       .+|.++++.-..+.|...++......   ..+.. ....+..+++.|||.+.++..
T Consensus       264 ~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          264 ASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             eEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            8883       46777776666778888888753212   12222 245789999999997666654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.70  E-value=0.0042  Score=61.92  Aligned_cols=230  Identities=10%  Similarity=0.077  Sum_probs=118.9

Q ss_pred             CCCEEEEEe-CC-----CcEEEEECCCCeeEEE--eecCCCceEEEEEeeCCCEEEEEeCC-----CcEEEEEccccc--
Q 038577          360 DSQLLATGA-DD-----NKVKVWTVSSGFCFVT--FTEHTNAVTALHFMANNHSLLSASLD-----GTVRAWDLFRYR--  424 (860)
Q Consensus       360 ~~~~l~~~~-~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~d-----g~i~~wd~~~~~--  424 (860)
                      ++..++.|+ .+     ..+.+||+.+.+-...  +....... ++ ...++..++.||.+     ..+.+||+.+.+  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~-~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYV-AS-VSLHDRIYVIGGYDGRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSC-EE-EEETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccc-cE-EEECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence            344556665 22     3688899877653321  11111111 22 22356677777755     368899987765  


Q ss_pred             -eeeEeeCCCCCcEEEEEECCCCCEEEEEecCC----CeEEEEECCCCceEEE--ecCcccCeEEEEEcCCCCEEEEEeC
Q 038577          425 -NFRTFTTPSSRQFVSLASDQSGEVICAGTLDS----FEIFVWSMKTGRLLDI--LSGHEGPVHGLVFSPTNATLASSSW  497 (860)
Q Consensus       425 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~i~v~d~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~~~  497 (860)
                       -...-..+....-.+++. .++++++.|+.++    ..+.+||..+.+-...  +......-..+.+  ++++++.|+.
T Consensus        92 ~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~  168 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGY  168 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCB
T ss_pred             eeEECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCC
Confidence             222222222211122222 2566777776543    2689999887654432  2211111122222  6777777765


Q ss_pred             C-----CcEEEEEccCCcceeEEc-cc-CCCeEEEEEeeCCCEEEEEeCC-----CeEEEEeCCCCceeEEEecccccCC
Q 038577          498 D-----KTVRLWNVFEGKGSVESF-PH-THDVLTVVYRPDGRQLACSTLD-----GQIHFWDPLNGELMYTIEGRRDISG  565 (860)
Q Consensus       498 d-----g~i~iwd~~~~~~~~~~~-~~-~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~  565 (860)
                      +     ..+.+||+.+.+-..... .. ......+  .-++++++.|+.+     ..+.+||+.+.+-...-.....   
T Consensus       169 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~---  243 (301)
T 2vpj_A          169 DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVA--LLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP---  243 (301)
T ss_dssp             CSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSC---
T ss_pred             CCCcccceEEEEeCCCCcEEeCCCCCcccccceEE--EECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCc---
Confidence            4     458889987764221111 11 1111222  2367777777654     4589999987654322111000   


Q ss_pred             CccccccccccccCCCCcEEEEEEecCCCEEEEecCC-----CeEEEEECCCceEE
Q 038577          566 GRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSS-----KYICMYDVADQVLL  616 (860)
Q Consensus       566 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-----g~v~vwd~~~~~~~  616 (860)
                                     ......+.  -+++.++.|+.+     ..+.+||+++.+-.
T Consensus       244 ---------------r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  282 (301)
T 2vpj_A          244 ---------------RCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDSWE  282 (301)
T ss_dssp             ---------------CBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred             ---------------ccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence                           00112222  377777888765     46889999887644

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.68  E-value=0.0025  Score=63.58  Aligned_cols=215  Identities=13%  Similarity=0.174  Sum_probs=113.1

Q ss_pred             CcEEEEEccCceEEEEec--CcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCe---eEE--EeecCCCceEE
Q 038577          329 GQLLVWEWRSESYILKQQ--GHYFDVNCLAYSPDSQLLATGADD-----NKVKVWTVSSGF---CFV--TFTEHTNAVTA  396 (860)
Q Consensus       329 g~i~v~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~---~~~--~~~~~~~~v~~  396 (860)
                      ..+.+||..+++......  ........+.  .++..++.|+.+     ..+.+||..+..   -..  .+.........
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~  108 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA  108 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence            468889988776543221  1111112222  356677777754     468999988765   222  22111112222


Q ss_pred             EEEeeCCCEEEEEeCCC-----cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC----CeEEEEECCCC
Q 038577          397 LHFMANNHSLLSASLDG-----TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS----FEIFVWSMKTG  467 (860)
Q Consensus       397 i~~~~~~~~l~s~~~dg-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~i~v~d~~~~  467 (860)
                      +.  .+++.++.||.++     .+.+||+.+.+-...-..+....-.+++. .++++++.|+.++    ..+.+||+.+.
T Consensus       109 ~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~  185 (301)
T 2vpj_A          109 TT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTG  185 (301)
T ss_dssp             EE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred             EE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCC
Confidence            22  2566777776543     58888887655333222222222122222 2667777776542    26899999877


Q ss_pred             ceEEEe--cCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEccCCcceeEEc-c-cCCCeEEEEEeeCCCEEEEEe
Q 038577          468 RLLDIL--SGHEGPVHGLVFSPTNATLASSSWD-----KTVRLWNVFEGKGSVESF-P-HTHDVLTVVYRPDGRQLACST  538 (860)
Q Consensus       468 ~~~~~~--~~h~~~v~~l~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~-~-~~~~v~~~~~s~~~~~l~~~~  538 (860)
                      +-...-  ......-..+.+  ++++++.|+.+     ..+.+||+.+.+-..... . .......+  .-++++++.|+
T Consensus       186 ~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG  261 (301)
T 2vpj_A          186 HWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT--VLRGRLYAIAG  261 (301)
T ss_dssp             EEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECC
T ss_pred             cEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEE--EECCEEEEEcC
Confidence            654332  111111122222  66777777764     468999987764221111 1 11112222  23777777776


Q ss_pred             CC-----CeEEEEeCCCCc
Q 038577          539 LD-----GQIHFWDPLNGE  552 (860)
Q Consensus       539 ~d-----g~i~iwd~~~~~  552 (860)
                      .+     ..+.+||+.+.+
T Consensus       262 ~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          262 YDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             BCSSSBEEEEEEEETTTTE
T ss_pred             cCCCcccccEEEEcCCCCe
Confidence            55     358889987764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.68  E-value=0.005  Score=71.53  Aligned_cols=283  Identities=16%  Similarity=0.142  Sum_probs=174.3

Q ss_pred             EEEeCCCEEEee----eCCeEEEEECCCCcEEe-eccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeec
Q 038577           18 AVLSQNTKLISP----VGNRVSVTDLIKSKTVT-LPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRF   92 (860)
Q Consensus        18 ~~~sdg~~l~~~----~~~~i~v~d~~~~~~~~-~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~   92 (860)
                      +.+...+++++-    .++.|.|.|+.++.... .+..-    -+.-.+|..+.||.-. ..++.|+|+++.+.+..+..
T Consensus        30 ~T~eSDkyicvre~~~~~~~vvIidl~~~~~~~rrpi~A----dsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~  104 (1630)
T 1xi4_A           30 LTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM  104 (1630)
T ss_pred             eeeecCceEEEEecCCCCceEEEEECCCCCCcccccccc----hhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc
Confidence            344345566653    23579999999876532 22122    2344678888777654 68999999999998888887


Q ss_pred             CCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEee-------cCCeE
Q 038577           93 KYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGS-------KDLAV  165 (860)
Q Consensus        93 ~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~-------~dg~v  165 (860)
                      ..+|..=.|-. .+.|+...+..|+-|++.+...+..-+.....+.  ...|..-..+++.++++..|       -.|.+
T Consensus       105 ~e~VvfWkWis-~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~--~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~m  181 (1630)
T 1xi4_A          105 TDDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLA--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAM  181 (1630)
T ss_pred             CCCceEEEecC-CCeeEEEcCCeEEEeccCCCCccHHHHhcchhcc--cCeeEEeeeCCCCCeEEEEeeccCCCccccee
Confidence            78887777764 3567777899999999976443222222222332  35677888889998887543       34789


Q ss_pred             EEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcC---CccEEEeeecCC-CCCCccccCCCCCCC
Q 038577          166 RLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR---DCYMFSWGFSGN-DGKIDETMEDSEPPS  241 (860)
Q Consensus       166 ~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~---dg~i~~w~~~~~-~~~~~~~~~~~~~~~  241 (860)
                      .+|..+..       ....+.||.+....+....+.  .....+..+..   .+.+.+-++... ....           
T Consensus       182 QLyS~er~-------~sQ~iegha~~F~~~~~~~~~--~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~-----------  241 (1630)
T 1xi4_A          182 QLYSVDRK-------VSQPIEGHAASFAQFKMEGNA--EESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ-----------  241 (1630)
T ss_pred             eeeecccc-------cchhhhHhHhhhheeccCCCC--CCceEEEEEEecCCCceEEEEecCCCccCCC-----------
Confidence            99998876       456677787766544432211  11112222222   267777777543 1100           


Q ss_pred             CCCCcceeeeEEeeeecccc--CCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCC
Q 038577          242 PGTPERRVKKWGLLRKDDFS--QAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGN  319 (860)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  319 (860)
                        ....  +.    ....++  ....-..++..++.-..+...+.-|.+.+||+.++.++..-+.....|...+......
T Consensus       242 --~f~k--k~----~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~  313 (1630)
T 1xi4_A          242 --PFPK--KA----VDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATA  313 (1630)
T ss_pred             --CCcc--cc----ccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCC
Confidence              0000  00    000111  1234566788888888999999999999999999999887777666666555554433


Q ss_pred             EEEEEEccCCcEEEEEcc
Q 038577          320 WLVFGCAKLGQLLVWEWR  337 (860)
Q Consensus       320 ~l~~~~~~~g~i~v~d~~  337 (860)
                      -++..... |.|.--.+.
T Consensus       314 g~~~vnr~-G~vl~v~v~  330 (1630)
T 1xi4_A          314 GIIGVNRK-GQVLSVCVE  330 (1630)
T ss_pred             ceEEEcCC-ceEEEEEEc
Confidence            33333332 544444333

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.60  E-value=0.059  Score=54.74  Aligned_cols=146  Identities=10%  Similarity=0.041  Sum_probs=79.8

Q ss_pred             CCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEee------CCCCCcEEEEEECCC---CCEEEEEecC------
Q 038577          391 TNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFT------TPSSRQFVSLASDQS---GEVICAGTLD------  455 (860)
Q Consensus       391 ~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~------~~~~~~~~~~~~~~~---~~~l~~~~~~------  455 (860)
                      -...+.|+|.|+|+.++.+...|.|++++.. ++....+.      .........++++|+   +..|++....      
T Consensus        17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             ESSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CCCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            3457899999999845556678999998853 32211111      122335688999996   5555554321      


Q ss_pred             -CCeEEEEECCCC--ce--EE-EecC------cccCeEEEEEcCCCCEEEEEeCC-------------CcEEEEEccCCc
Q 038577          456 -SFEIFVWSMKTG--RL--LD-ILSG------HEGPVHGLVFSPTNATLASSSWD-------------KTVRLWNVFEGK  510 (860)
Q Consensus       456 -~~~i~v~d~~~~--~~--~~-~~~~------h~~~v~~l~~s~~~~~l~s~~~d-------------g~i~iwd~~~~~  510 (860)
                       ...|..|+...+  +.  .. .+..      .......++|.|||.+.++.+..             |.|.-++....-
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~  175 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI  175 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence             126777776533  11  11 1111      01123579999999766665432             456666654320


Q ss_pred             ------------ceeEEcccCCCeEEEEEeeCCCEEEEE
Q 038577          511 ------------GSVESFPHTHDVLTVVYRPDGRQLACS  537 (860)
Q Consensus       511 ------------~~~~~~~~~~~v~~~~~s~~~~~l~~~  537 (860)
                                  ..............++|+|+...|.++
T Consensus       176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE
T ss_pred             CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE
Confidence                        011111122346789999943344444

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.58  E-value=0.022  Score=57.14  Aligned_cols=205  Identities=10%  Similarity=0.118  Sum_probs=123.1

Q ss_pred             CeEEEEEcCCCCEEEEE------------eCCCcEEEEECCC--CeeE-EEeec-----CCCceEEEEEee--CCC-EEE
Q 038577          351 DVNCLAYSPDSQLLATG------------ADDNKVKVWTVSS--GFCF-VTFTE-----HTNAVTALHFMA--NNH-SLL  407 (860)
Q Consensus       351 ~v~~~~~s~~~~~l~~~------------~~dg~i~iwd~~~--~~~~-~~~~~-----~~~~v~~i~~~~--~~~-~l~  407 (860)
                      ....+++.|+|..++++            ..+|.|.++|+.+  ++.. ..+.+     ..-....+.+.+  ++. +|+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            34567778877554444            1689999999873  2221 12222     234678888876  343 444


Q ss_pred             EEe-C--CCcEEEEEccccc----eeeEeeCCCCCcEEEEEECCCCCEEEEEec----------------CCCeEEEEEC
Q 038577          408 SAS-L--DGTVRAWDLFRYR----NFRTFTTPSSRQFVSLASDQSGEVICAGTL----------------DSFEIFVWSM  464 (860)
Q Consensus       408 s~~-~--dg~i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------~~~~i~v~d~  464 (860)
                      .+. .  +.++.+|++....    .+..+....-.....+.+.++|.+.+....                ..+.++.+|.
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~  210 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  210 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence            443 2  4578888876532    233444444556789999999998776541                1235666665


Q ss_pred             CCCceEEEecCcccCeEEEEEcCCCCEEEEEe-CCCcEEEEEccCCcce--eEEcccCCCeEEEEEee-CCCEEEEEeCC
Q 038577          465 KTGRLLDILSGHEGPVHGLVFSPTNATLASSS-WDKTVRLWNVFEGKGS--VESFPHTHDVLTVVYRP-DGRQLACSTLD  540 (860)
Q Consensus       465 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~-~~~~l~~~~~d  540 (860)
                        ++.. .+...-...+.++|+||++.|..+. ..+.|..|++......  ..........-.+++.+ +|++.+++..+
T Consensus       211 --~~~~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          211 --NDVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             --TCCE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESC
T ss_pred             --CeEE-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCC
Confidence              3332 2222345578999999998877665 4688999998642212  11223355677889998 59877766544


Q ss_pred             -CeEEEEeCC--CCceeEEEe
Q 038577          541 -GQIHFWDPL--NGELMYTIE  558 (860)
Q Consensus       541 -g~i~iwd~~--~~~~~~~~~  558 (860)
                       +.|..|+..  .+..+..++
T Consensus       288 g~~v~~~~P~~~~~s~v~rI~  308 (355)
T 3sre_A          288 GMRIFFYDAENPPGSEVLRIQ  308 (355)
T ss_dssp             HHHHHSCCTTSCCCEEEEEEE
T ss_pred             ceEEEEECCCCCCCCEEEEEE
Confidence             345555654  244444444

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.55  E-value=0.006  Score=61.35  Aligned_cols=145  Identities=12%  Similarity=0.158  Sum_probs=95.5

Q ss_pred             CCCEEEeeeCCeEEEEECCCCcEEeec-cCC---ccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCe------------
Q 038577           22 QNTKLISPVGNRVSVTDLIKSKTVTLP-VES---SSNICRIAVSPDGTFLLTVDENQRCHFINLHCHV------------   85 (860)
Q Consensus        22 dg~~l~~~~~~~i~v~d~~~~~~~~~~-~~h---~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~------------   85 (860)
                      +|..++++.++.||.-++..+...+.+ ..+   -..|..+..||+|++||..+. ..|.|-.+..+.            
T Consensus        31 n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~  109 (452)
T 3pbp_A           31 NGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAF  109 (452)
T ss_dssp             TTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTT
T ss_pred             CCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccccccc
Confidence            999999999999999998854432222 122   236899999999999999875 578888776221            


Q ss_pred             EEEEee-------cCCceeEEEECCCC---CEEEE-EeCCeEEEEeCCCCCcccceeE-E--EEEeeccCCCeEEEEEcC
Q 038577           86 VLHRVR-------FKYPVNAILFSPNG---KYIAV-GTGKLVQIWRSPGFKKEVFAFE-L--IRTLADCNDKVTALNWSP  151 (860)
Q Consensus        86 ~~~~~~-------~~~~v~~~~fspdg---~~la~-~~~~~i~iwd~~~~~~~~~~~~-~--~~~~~~h~~~v~~l~~s~  151 (860)
                      ..+.+.       ...+|..+.|+|-+   ..|++ ..|+.|++||+.........+. .  ...+..+...|.+++|.+
T Consensus       110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~  189 (452)
T 3pbp_A          110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK  189 (452)
T ss_dssp             EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT
T ss_pred             ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC
Confidence            223333       14679999999944   34444 4899999999986332111000 0  011122336688999999


Q ss_pred             CCCeEEEee--cCCeEEE
Q 038577          152 DSNYLLVGS--KDLAVRL  167 (860)
Q Consensus       152 d~~~l~s~~--~dg~v~v  167 (860)
                      ++-.|...+  ..|.|.-
T Consensus       190 ~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          190 DGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             TSSCEEEEECTTSCEEEE
T ss_pred             CCcEEEEEecCCCCCEEE
Confidence            876666544  6676654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.54  E-value=0.059  Score=53.80  Aligned_cols=250  Identities=8%  Similarity=0.007  Sum_probs=130.4

Q ss_pred             EEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccce----EeecCCCcEEEEEEccC---CCCCccc
Q 038577          135 RTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPF----LLLGHRDSVVGCFFSVD---KKTDKVN  207 (860)
Q Consensus       135 ~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~----~~~~h~~~i~~~~~~~~---~~~~~~~  207 (860)
                      ..+...-...+.|+|.|||+++++--..|.|++++...+ ..   ....    ...........++++|+   +.     
T Consensus        25 ~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g-~~---~~v~~~~~v~~~g~~GllGia~~Pdf~~~g-----   95 (347)
T 3das_A           25 RTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTG-RK---TELGEVPGVSPSGEGGLLGIALSPDYASDH-----   95 (347)
T ss_dssp             EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTC-CE---EEEEECTTCCCBTTBSEEEEEECTTHHHHC-----
T ss_pred             EEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCC-cE---eeecccCceeecCCCCceeeEeccccccCC-----
Confidence            344444556789999999987666554899998876544 11   1111    12234567899999985   22     


Q ss_pred             eEEEE---cCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEc
Q 038577          208 RIYTI---ARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFS  284 (860)
Q Consensus       208 ~l~s~---~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  284 (860)
                      .|+..   ..++.|.-|.........            .........+.-...    ........+.|.|+|.+.++.+.
T Consensus        96 ~lYv~yt~~~~~~v~R~~~~~~~~~~------------~~~~~~~~i~~~~p~----~~~H~g~~l~fgpDG~Lyvt~Gd  159 (347)
T 3das_A           96 MVYAYFTSASDNRIVRMLYDEKKPSG------------EQLGAPDTVFRGIPK----GVIHNGGRIAFGPDKMLYAGTGE  159 (347)
T ss_dssp             EEEEEEECSSSEEEEEEEBCTTSCTT------------CCBCCCEEEEEEECC----CSSCCCCCEEECTTSCEEEECBC
T ss_pred             EEEEEEecCCCCEEEEEEeCCCCccc------------ccCCCcEEEEEcCCC----CCCccCccccCCCCCCEEEEECC
Confidence            45443   234555555554321100            000000011111111    11224567999999976665432


Q ss_pred             -------------CCeEEEEECCCce-------eEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce----
Q 038577          285 -------------NGVFGLYQMPDFV-------CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES----  340 (860)
Q Consensus       285 -------------~g~i~~~~~~~~~-------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~----  340 (860)
                                   .|.|.-++....-       ....+.........++|+|+|...++-...++.=.+--+..+.    
T Consensus       160 ~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGw  239 (347)
T 3das_A          160 SGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGW  239 (347)
T ss_dssp             TTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCT
T ss_pred             CCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecC
Confidence                         3566666653210       1112233334567889999877665544333322222222211    


Q ss_pred             --------------EEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCee----EEEeecCCCceEEEEEeeC
Q 038577          341 --------------YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFC----FVTFTEHTNAVTALHFMAN  402 (860)
Q Consensus       341 --------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~i~~~~~  402 (860)
                                    .+..+..+......++|. +|..++..-..+.|....+.....    ...+.+....+.+++..||
T Consensus       240 P~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pD  318 (347)
T 3das_A          240 PEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGG  318 (347)
T ss_dssp             TTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEET
T ss_pred             CcccCCCCCccccCCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCC
Confidence                          111122122245567776 455666666666777666654432    2334444568999999999


Q ss_pred             CCEEEEEe
Q 038577          403 NHSLLSAS  410 (860)
Q Consensus       403 ~~~l~s~~  410 (860)
                      |..+++..
T Consensus       319 G~lyv~td  326 (347)
T 3das_A          319 DKLWLVTS  326 (347)
T ss_dssp             TEEEEEEC
T ss_pred             CcEEEEEc
Confidence            96655543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.53  E-value=0.0079  Score=59.94  Aligned_cols=229  Identities=13%  Similarity=0.092  Sum_probs=115.1

Q ss_pred             CEEEEEEcC----CeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccC----CcEEEEEccCceEEEEecC-
Q 038577          277 DMVVVGFSN----GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKL----GQLLVWEWRSESYILKQQG-  347 (860)
Q Consensus       277 ~~l~~~~~~----g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~----g~i~v~d~~~~~~~~~~~~-  347 (860)
                      ..++.|+.+    ..+..||..+.+-...-..........+...++..+++++...    ..+.+||..+.+....... 
T Consensus        17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p   96 (302)
T 2xn4_A           17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMR   96 (302)
T ss_dssp             EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred             EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCC
Confidence            345555543    4678888877654332222222222222233555555555331    4688999888765443221 


Q ss_pred             -cccCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCeeEEE--eecCCCceEEEEEeeCCCEEEEEeCC-------
Q 038577          348 -HYFDVNCLAYSPDSQLLATGADDN-----KVKVWTVSSGFCFVT--FTEHTNAVTALHFMANNHSLLSASLD-------  412 (860)
Q Consensus       348 -~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~d-------  412 (860)
                       ......++.+  ++..++.|+.++     .+.+||+.+.+-...  +....... +++. -+++.++.||.+       
T Consensus        97 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~  172 (302)
T 2xn4_A           97 DRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSV-GVGV-VGGLLYAVGGYDVASRQCL  172 (302)
T ss_dssp             SCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCEETTTTEEC
T ss_pred             ccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCc-eEEE-ECCEEEEEeCCCCCCCccc
Confidence             1111222222  567777777553     578888877653332  11111111 2222 356666666643       


Q ss_pred             CcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC----CeEEEEECCCCceEEEecCcccCeEEEEEcCC
Q 038577          413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS----FEIFVWSMKTGRLLDILSGHEGPVHGLVFSPT  488 (860)
Q Consensus       413 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~  488 (860)
                      ..+.+||+.+.+-...-..+......+++. -++++++.|+.++    ..+.+||..+.+-...-.........-+...+
T Consensus       173 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~  251 (302)
T 2xn4_A          173 STVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVN  251 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEET
T ss_pred             cEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEEC
Confidence            358889987654332222222211122222 2567777776542    26999999877544322111111111111226


Q ss_pred             CCEEEEEeCCC-----cEEEEEccCCc
Q 038577          489 NATLASSSWDK-----TVRLWNVFEGK  510 (860)
Q Consensus       489 ~~~l~s~~~dg-----~i~iwd~~~~~  510 (860)
                      +++++.|+.++     .+.+||+.+.+
T Consensus       252 ~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          252 GLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             TEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CEEEEECCcCCCcccccEEEEcCCCCe
Confidence            77777777553     47888887654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.52  E-value=0.012  Score=59.05  Aligned_cols=194  Identities=11%  Similarity=0.096  Sum_probs=115.1

Q ss_pred             eEEEEecCCCCEEEEE------------EcCCeEEEEECCCc-eeEEEEeec-------CceeEEEEEee--CCC-EEEE
Q 038577          267 VTACDYHRGLDMVVVG------------FSNGVFGLYQMPDF-VCIHLLSIS-------REKITTAVFNE--LGN-WLVF  323 (860)
Q Consensus       267 v~~~~~~~~~~~l~~~------------~~~g~i~~~~~~~~-~~~~~~~~~-------~~~i~~~~~s~--~~~-~l~~  323 (860)
                      ...++..|+|..+++.            ..+|.|.++|..+. .....+...       .-....+.+.+  +|. +|++
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence            4456667776444433            26899999998732 112222221       23567777766  454 4555


Q ss_pred             EEcc--CCcEEEEEccCc--e--EEEEecC-cccCeEEEEEcCCCCEEEEEeC-----------------CCcEEEEECC
Q 038577          324 GCAK--LGQLLVWEWRSE--S--YILKQQG-HYFDVNCLAYSPDSQLLATGAD-----------------DNKVKVWTVS  379 (860)
Q Consensus       324 ~~~~--~g~i~v~d~~~~--~--~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~-----------------dg~i~iwd~~  379 (860)
                      +...  ...+.+|++..+  .  .+..+.+ .....+.+.+.++|.+.++...                 .|.|..++. 
T Consensus       132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~-  210 (355)
T 3sre_A          132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-  210 (355)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred             EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence            4433  467778776543  2  2223332 2345788999999987776541                 244555554 


Q ss_pred             CCeeEEEeecCCCceEEEEEeeCCCEEEEEe-CCCcEEEEEccc-cc--eeeEeeCCCCCcEEEEEECC-CCCEEEEEec
Q 038577          380 SGFCFVTFTEHTNAVTALHFMANNHSLLSAS-LDGTVRAWDLFR-YR--NFRTFTTPSSRQFVSLASDQ-SGEVICAGTL  454 (860)
Q Consensus       380 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~i~~wd~~~-~~--~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~  454 (860)
                       ++.. .+...-...+.++|+||++.++.+. ..+.|..|++.. ++  ..+.+..  ......+++++ +|++.+++..
T Consensus       211 -~~~~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~--~g~PDGi~vD~e~G~lwva~~~  286 (355)
T 3sre_A          211 -NDVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF--DTLVDNISVDPVTGDLWVGCHP  286 (355)
T ss_dssp             -TCCE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC--SSEEEEEEECTTTCCEEEEEES
T ss_pred             -CeEE-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC--CCCCceEEEeCCCCcEEEEecC
Confidence             3322 2323345678999999998777654 567899999863 22  2233322  45678899999 5998877765


Q ss_pred             CCCeEEEEECC
Q 038577          455 DSFEIFVWSMK  465 (860)
Q Consensus       455 ~~~~i~v~d~~  465 (860)
                      +++.|..|+..
T Consensus       287 ~g~~v~~~~P~  297 (355)
T 3sre_A          287 NGMRIFFYDAE  297 (355)
T ss_dssp             CHHHHHSCCTT
T ss_pred             CceEEEEECCC
Confidence            55455555543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.51  E-value=0.008  Score=59.89  Aligned_cols=216  Identities=14%  Similarity=0.164  Sum_probs=110.9

Q ss_pred             CcEEEEEccCceEEEEe--cCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCeeEEEe--ecCCCceEEEEE
Q 038577          329 GQLLVWEWRSESYILKQ--QGHYFDVNCLAYSPDSQLLATGADD-----NKVKVWTVSSGFCFVTF--TEHTNAVTALHF  399 (860)
Q Consensus       329 g~i~v~d~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~--~~~~~~v~~i~~  399 (860)
                      ..+..||..+.+....-  ......-..+.+  ++..++.|+.+     ..+.+||..+.+-...-  .........+. 
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-  106 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-  106 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-
Confidence            45788888877644332  111111122222  56677777754     35888998876533221  11111112222 


Q ss_pred             eeCCCEEEEEeCCC-----cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC------CeEEEEECCCCc
Q 038577          400 MANNHSLLSASLDG-----TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS------FEIFVWSMKTGR  468 (860)
Q Consensus       400 ~~~~~~l~s~~~dg-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~i~v~d~~~~~  468 (860)
                       -+++.++.||.++     .+.+||+.+.+-...-..+......+++. -++++++.|+.++      ..+.+||..+.+
T Consensus       107 -~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~  184 (302)
T 2xn4_A          107 -LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNE  184 (302)
T ss_dssp             -ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred             -ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence             3566777777654     47788877654333222222222122222 2566666665422      258999998775


Q ss_pred             eEEE--ecCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEccCCcceeEEcccC-CCeEEEEEeeCCCEEEEEeCC
Q 038577          469 LLDI--LSGHEGPVHGLVFSPTNATLASSSWD-----KTVRLWNVFEGKGSVESFPHT-HDVLTVVYRPDGRQLACSTLD  540 (860)
Q Consensus       469 ~~~~--~~~h~~~v~~l~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d  540 (860)
                      -...  +......-..+.+  ++++++.|+.+     ..+.+||+.+.+-.. ..... ......+..-++++++.|+.+
T Consensus       185 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~r~~~~~~~~~~~i~v~GG~~  261 (302)
T 2xn4_A          185 WTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ-VADMNMCRRNAGVCAVNGLLYVVGGDD  261 (302)
T ss_dssp             EEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred             EEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEee-CCCCCCccccCeEEEECCEEEEECCcC
Confidence            4432  2111111122222  67777777754     368899987764211 11111 111111222377777777755


Q ss_pred             C-----eEEEEeCCCCc
Q 038577          541 G-----QIHFWDPLNGE  552 (860)
Q Consensus       541 g-----~i~iwd~~~~~  552 (860)
                      +     .+.+||+.+.+
T Consensus       262 ~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          262 GSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             SSSBCCCEEEEETTTTE
T ss_pred             CCcccccEEEEcCCCCe
Confidence            3     48899987764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.50  E-value=0.034  Score=64.89  Aligned_cols=229  Identities=9%  Similarity=0.059  Sum_probs=134.2

Q ss_pred             CcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEE
Q 038577          371 NKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVIC  450 (860)
Q Consensus       371 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  450 (860)
                      ..|.|.|+.++..+...   .-.--+...+|..+.++.-. ..++.+||+.+...++.+..+.  .+.-..|-.+. .|+
T Consensus        48 ~~vvIidl~~~~~~~rr---pi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e--~VvfWkWis~~-~l~  120 (1630)
T 1xi4_A           48 AQVVIIDMNDPSNPIRR---PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD--DVTFWKWISLN-TVA  120 (1630)
T ss_pred             ceEEEEECCCCCCcccc---cccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC--CceEEEecCCC-eeE
Confidence            47888888876543211   11112344677776666554 6789999999888887777655  34555554333 333


Q ss_pred             EEecCCCeEEEEECCC-CceEEEecCc----ccCeEEEEEcCCCCEEEEEe-------CCCcEEEEEccCCcceeEEccc
Q 038577          451 AGTLDSFEIFVWSMKT-GRLLDILSGH----EGPVHGLVFSPTNATLASSS-------WDKTVRLWNVFEGKGSVESFPH  518 (860)
Q Consensus       451 ~~~~~~~~i~v~d~~~-~~~~~~~~~h----~~~v~~l~~s~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~  518 (860)
                      ..+..  .|+.|++.. ..+.+.+..|    ...|..-..+++.+|++..|       -.|.+.+|+++.+. ...+.+|
T Consensus       121 lVT~~--aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegh  197 (1630)
T 1xi4_A          121 LVTDN--AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGH  197 (1630)
T ss_pred             EEcCC--eEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHh
Confidence            33333  799999974 3454555444    45677788899999977544       34789999987654 3333344


Q ss_pred             CCCeEEEEEe--eC-CCEEEEEeC---CCeEEEEeCCCC-ceeEEEecccccCCCccccccccccccCCCCcEEEEEEec
Q 038577          519 THDVLTVVYR--PD-GRQLACSTL---DGQIHFWDPLNG-ELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSA  591 (860)
Q Consensus       519 ~~~v~~~~~s--~~-~~~l~~~~~---dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  591 (860)
                      .+.-..+...  +. ...++.+..   .+.++|-++... .--..+..         .......+....+....++..|+
T Consensus       198 a~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~k---------k~~~~~~~~~~~~Dfpv~~~vs~  268 (1630)
T 1xi4_A          198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK---------KAVDVFFPPEAQNDFPVAMQISE  268 (1630)
T ss_pred             HhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcc---------ccccccCCcccccCcceEEEecc
Confidence            4333222221  11 112222211   267888887442 10000000         00000111112334567888898


Q ss_pred             CCCEEEEecCCCeEEEEECCCceEEEE
Q 038577          592 DGSYILAGGSSKYICMYDVADQVLLRR  618 (860)
Q Consensus       592 ~g~~l~~~~~dg~v~vwd~~~~~~~~~  618 (860)
                      .-..+...+.-|.|.+||+.+|.++-.
T Consensus       269 k~g~iy~itk~G~~~~~d~~t~~~i~~  295 (1630)
T 1xi4_A          269 KHDVVFLITKYGYIHLYDLETGTCIYM  295 (1630)
T ss_pred             ccCEEEEEecCceEEEEecccchhhhh
Confidence            888899999999999999999988753

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.46  E-value=0.0094  Score=59.51  Aligned_cols=215  Identities=10%  Similarity=0.039  Sum_probs=113.4

Q ss_pred             CcEEEEEccCceEEEEec--CcccCeEEEEEcCCCCEEEEEeCC----CcEEEEECCCCeeEEE--eecCCCceEEEEEe
Q 038577          329 GQLLVWEWRSESYILKQQ--GHYFDVNCLAYSPDSQLLATGADD----NKVKVWTVSSGFCFVT--FTEHTNAVTALHFM  400 (860)
Q Consensus       329 g~i~v~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~  400 (860)
                      ..+.+||..+++....-.  .....-..+.  -++..++.|+.+    ..+.+||..+.+-...  +.........+  .
T Consensus        24 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~   99 (306)
T 3ii7_A           24 QSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAAC--A   99 (306)
T ss_dssp             TSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEE--E
T ss_pred             ceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEE--E
Confidence            578899988876543221  1111122222  256677777754    5788999887653322  21111111222  2


Q ss_pred             eCCCEEEEEeCC------CcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecC--------CCeEEEEECCC
Q 038577          401 ANNHSLLSASLD------GTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLD--------SFEIFVWSMKT  466 (860)
Q Consensus       401 ~~~~~l~s~~~d------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~i~v~d~~~  466 (860)
                      -+++.++.||.+      ..+.+||..+.+-...-..+....-.+++. -++++++.|+.+        -..+.+||..+
T Consensus       100 ~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~  178 (306)
T 3ii7_A          100 AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPAT  178 (306)
T ss_dssp             ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred             ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCC
Confidence            366677777765      458889987765333222222222122222 256666666532        12589999988


Q ss_pred             CceEEEecCcc--cCeEEEEEcCCCCEEEEEeCC-----CcEEEEEccCCcceeE--EcccCCCeEEEEEeeCCCEEEEE
Q 038577          467 GRLLDILSGHE--GPVHGLVFSPTNATLASSSWD-----KTVRLWNVFEGKGSVE--SFPHTHDVLTVVYRPDGRQLACS  537 (860)
Q Consensus       467 ~~~~~~~~~h~--~~v~~l~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~  537 (860)
                      .+-...-....  ..-..+.+  ++++++.|+.+     ..+.+||+.+.+-...  ..........+.+  ++++++.|
T Consensus       179 ~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~G  254 (306)
T 3ii7_A          179 ETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLA  254 (306)
T ss_dssp             TEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEE
T ss_pred             CeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEe
Confidence            75443321111  11122222  66777777653     4588899877641111  1111112222333  77788888


Q ss_pred             eCC-----CeEEEEeCCCCc
Q 038577          538 TLD-----GQIHFWDPLNGE  552 (860)
Q Consensus       538 ~~d-----g~i~iwd~~~~~  552 (860)
                      +.+     ..+.+||+.+.+
T Consensus       255 G~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          255 GFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             CBCSSSBCCEEEEEETTTTE
T ss_pred             CcCCCeeeeeEEEEcCCCCe
Confidence            754     468899988764

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.45  E-value=0.011  Score=58.88  Aligned_cols=226  Identities=8%  Similarity=0.039  Sum_probs=117.0

Q ss_pred             EEEEEEc--CCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEcc---CCcEEEEEccCceEEEEecC--ccc
Q 038577          278 MVVVGFS--NGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK---LGQLLVWEWRSESYILKQQG--HYF  350 (860)
Q Consensus       278 ~l~~~~~--~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~---~g~i~v~d~~~~~~~~~~~~--~~~  350 (860)
                      ++++|+.  ...+..||..+.+-...-..........+...++..+++++..   ...+.+||..+++.......  ...
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~   93 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRD   93 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCB
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcccc
Confidence            4455554  3678899987765443222222222222233455555555532   25788999988765443221  111


Q ss_pred             CeEEEEEcCCCCEEEEEeCC------CcEEEEECCCCeeEEE--eecCCCceEEEEEeeCCCEEEEEeC---------CC
Q 038577          351 DVNCLAYSPDSQLLATGADD------NKVKVWTVSSGFCFVT--FTEHTNAVTALHFMANNHSLLSASL---------DG  413 (860)
Q Consensus       351 ~v~~~~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~---------dg  413 (860)
                      ....+.+  +++.++.|+.+      ..+.+||..+..-...  +......- +++ .-+++.++.|+.         -.
T Consensus        94 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~  169 (306)
T 3ii7_A           94 SLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSH-GMV-EANGLIYVCGGSLGNNVSGRVLN  169 (306)
T ss_dssp             SCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSC-EEE-EETTEEEEECCEESCTTTCEECC
T ss_pred             ceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCccee-EEE-EECCEEEEECCCCCCCCcccccc
Confidence            1222222  66777777765      4688999887653332  11111111 122 235666666653         34


Q ss_pred             cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC----CeEEEEECCCCceEEE--ecCcccCeEEEEEcC
Q 038577          414 TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS----FEIFVWSMKTGRLLDI--LSGHEGPVHGLVFSP  487 (860)
Q Consensus       414 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~i~v~d~~~~~~~~~--~~~h~~~v~~l~~s~  487 (860)
                      .+.+||+.+.+-...-..+....-.+++.. ++++++.|+.++    ..+.+||+.+.+-...  +.........+.+  
T Consensus       170 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--  246 (306)
T 3ii7_A          170 SCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--  246 (306)
T ss_dssp             CEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--
T ss_pred             eEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--
Confidence            588999877643322222222221222222 566777766432    2689999987654332  2111112222333  


Q ss_pred             CCCEEEEEeCC-----CcEEEEEccCCc
Q 038577          488 TNATLASSSWD-----KTVRLWNVFEGK  510 (860)
Q Consensus       488 ~~~~l~s~~~d-----g~i~iwd~~~~~  510 (860)
                      ++++++.|+.+     ..+.+||+.+.+
T Consensus       247 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          247 GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            67777777754     457778876654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=97.43  E-value=0.062  Score=55.89  Aligned_cols=259  Identities=10%  Similarity=0.062  Sum_probs=143.7

Q ss_pred             EEEEEcCCeEEEEECCCceeEEEEeecC-------------------------cee--EEEEEe---eCCCEEEEEEccC
Q 038577          279 VVVGFSNGVFGLYQMPDFVCIHLLSISR-------------------------EKI--TTAVFN---ELGNWLVFGCAKL  328 (860)
Q Consensus       279 l~~~~~~g~i~~~~~~~~~~~~~~~~~~-------------------------~~i--~~~~~s---~~~~~l~~~~~~~  328 (860)
                      +.+|+..|.++++-+++++.+..+....                         +..  ..+.+.   .||+++++-...+
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan  152 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN  152 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence            6688899999999999999888765322                         111  233333   4789999888778


Q ss_pred             CcEEEEEccCceEEEEec-CcccCeEEEEEc--CCCCEEEEEeCC-------CcEEEEECCCCeeEEEe---ecCCCce-
Q 038577          329 GQLLVWEWRSESYILKQQ-GHYFDVNCLAYS--PDSQLLATGADD-------NKVKVWTVSSGFCFVTF---TEHTNAV-  394 (860)
Q Consensus       329 g~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s--~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~---~~~~~~v-  394 (860)
                      ..+...+++..+.-..+. .....+..++|-  |+..+++.+++.       |..  ..++..+....+   ...+-.| 
T Consensus       153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~--~~~~~~~~y~~f~~iD~~tm~v~  230 (638)
T 3sbq_A          153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKV--FDLQDENSYTMYNAIDAETMEMA  230 (638)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSC--CCTTSTTEEEEEEEEETTTCSEE
T ss_pred             cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcc--cccCChhhceEEEEEcCCccEEE
Confidence            899999998877655443 345567888886  677888887752       221  110111111111   1111111 


Q ss_pred             ---------EEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEEC--------CCCCEEEEEecCCC
Q 038577          395 ---------TALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASD--------QSGEVICAGTLDSF  457 (860)
Q Consensus       395 ---------~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~  457 (860)
                               ..+...+++.+.++.+.+..       .+..+....  ....-..+.|+        .+|++-..   ++.
T Consensus       231 ~Qv~v~gnld~~~~~~~g~~af~t~yNsE-------~~~~l~em~--~~e~D~~~vfn~~~ie~~vk~G~~~~~---~g~  298 (638)
T 3sbq_A          231 FQVIVDGNLDNTDADYTGRFAAATCYNSE-------KAFDLGGMM--RNERDWVVVFDIHAVEAAVKAGDFITL---GDS  298 (638)
T ss_dssp             EEEEESSCCCCEEECSSSSEEEEEESCTT-------CCSSHHHHT--CSSCEEEEEEEHHHHHHHHHTTCCBCC---TTC
T ss_pred             EEEEcCCChhhcCCCCCCCEEEEeeeccc-------cCcChhhcC--cccccEEEEecHHHHHHHHhcCCeEEE---CCC
Confidence                     11222333333333332211       000000000  01111122221        13332211   100


Q ss_pred             eEEEEECCC----CceEEEecCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEEccCCc------------ceeEEcccCC
Q 038577          458 EIFVWSMKT----GRLLDILSGHEGPVHGLVFSPTNATLASSSW-DKTVRLWNVFEGK------------GSVESFPHTH  520 (860)
Q Consensus       458 ~i~v~d~~~----~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~------------~~~~~~~~~~  520 (860)
                      .+.+.|.+.    +..+..+-.-......+.++|||++++.++. +.++.++|+..-.            .+........
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl  378 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL  378 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence            367777765    3222222223445567899999999887664 7889999987421            1122223455


Q ss_pred             CeEEEEEeeCCCEEEEEeCCCeEEEEeCCCC
Q 038577          521 DVLTVVYRPDGRQLACSTLDGQIHFWDPLNG  551 (860)
Q Consensus       521 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  551 (860)
                      .....+|.++|.-..+---|..|.-|++...
T Consensus       379 GPlHt~Fd~~G~aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          379 GPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             CEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred             cccEEEECCCCceEeeeeecceEEEEeccHH
Confidence            6788999999955555568999999998653

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.43  E-value=0.12  Score=51.55  Aligned_cols=261  Identities=11%  Similarity=0.089  Sum_probs=131.3

Q ss_pred             CccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEE--EEee-----cCCceeEEEECCC---CCEEEEE----eCCeE
Q 038577           51 SSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVL--HRVR-----FKYPVNAILFSPN---GKYIAVG----TGKLV  116 (860)
Q Consensus        51 h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~--~~~~-----~~~~v~~~~fspd---g~~la~~----~~~~i  116 (860)
                      .-.....|+|.|||+++++-...|.|++++..+++..  ..+.     .......|+|+||   +.+|.+.    .++.|
T Consensus        30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v  109 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI  109 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred             CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence            3456789999999997777655899999987666542  2221     2456789999996   3444332    35567


Q ss_pred             EEEeCCCCC---ccc-ceeEEEEEee-ccCCCeEEEEEcCCCCeEEEeec-------------CCeEEEEeeccccc-Cc
Q 038577          117 QIWRSPGFK---KEV-FAFELIRTLA-DCNDKVTALNWSPDSNYLLVGSK-------------DLAVRLFYVKEKLK-GI  177 (860)
Q Consensus       117 ~iwd~~~~~---~~~-~~~~~~~~~~-~h~~~v~~l~~s~d~~~l~s~~~-------------dg~v~vwd~~~~~~-~~  177 (860)
                      .-|....+.   ... ....++..+. +....-..|+|.|||.+.++.+.             .|.|.-.+.+.... ..
T Consensus       110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n  189 (347)
T 3das_A          110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN  189 (347)
T ss_dssp             EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred             EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence            667766532   111 1122223332 11223467999999987777542             23333333332100 00


Q ss_pred             cc-ccceEeecCCCcEEEEEEccCCCCCccceEEEEc--CCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEe
Q 038577          178 HT-NKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIA--RDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGL  254 (860)
Q Consensus       178 ~~-~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~--~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (860)
                      .. .....-.+|. ....++|.|++.      |+++.  .|+.-.+--+..+..--=......  .........+..|  
T Consensus       190 Pf~~~~i~a~G~R-Np~Gla~dp~G~------L~~~d~g~~~~deln~i~~G~nyGwP~~~g~--~~~~~~~~P~~~~--  258 (347)
T 3das_A          190 PFPGSPVYSYGHR-NVQGLAWDDKQR------LFASEFGQDTWDELNAIKPGDNYGWPEAEGK--GGGSGFHDPVAQW--  258 (347)
T ss_dssp             SSTTCCEEEBCCS-BCCEEEECTTCC------EEEEECCSSSCEEEEEECTTCBCCTTTCCSS--CCCTTCCCCSEEE--
T ss_pred             CCCCCeEEeeCCC-CcceEEECCCCC------EEEEecCCCCCceeeEEcCCCEecCCcccCC--CCCccccCCcEec--
Confidence            00 0112233554 345788998765      44432  233222222222111000000000  0000000111111  


Q ss_pred             eeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCcee----EEEEeecCceeEEEEEeeCCCEEEEEEccCC
Q 038577          255 LRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVC----IHLLSISREKITTAVFNELGNWLVFGCAKLG  329 (860)
Q Consensus       255 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g  329 (860)
                            ..+......++|. ++..+......+.|....+.....    ...+......+..++..|||..+++....+|
T Consensus       259 ------~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td~~~g  330 (347)
T 3das_A          259 ------STDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTSNTDG  330 (347)
T ss_dssp             ------CTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEECTTSS
T ss_pred             ------CCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEcCCCC
Confidence                  1122345666665 456666666666776666654332    2233334467899999999987777655443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.39  E-value=0.15  Score=51.72  Aligned_cols=243  Identities=12%  Similarity=0.041  Sum_probs=125.1

Q ss_pred             CCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccC---CCCCccceEEEEcC----
Q 038577          142 DKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVD---KKTDKVNRIYTIAR----  214 (860)
Q Consensus       142 ~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~---~~~~~~~~l~s~~~----  214 (860)
                      .....|+|.|||++|+++...|.|++++.+.......................++++|+   +.     .|+....    
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g-----~lYv~~~~~~~   92 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSR-----RIWLSYSEVGD   92 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHC-----EEEEEEEEECS
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCC-----EEEEEEeCCCC
Confidence            34689999999984555567799998875432000000001111223456789999995   33     5555432    


Q ss_pred             ----CccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeee-eccc-cCCCCceEEEEecCCCCEEEEEEc----
Q 038577          215 ----DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLR-KDDF-SQAPSKVTACDYHRGLDMVVVGFS----  284 (860)
Q Consensus       215 ----dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~l~~~~~----  284 (860)
                          ...|..++.+.....                   +....... .... .........++|.|+|.+.++.+.    
T Consensus        93 ~g~~~~~v~r~~~~~~~~~-------------------~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~  153 (353)
T 2g8s_A           93 DGKAGTAVGYGRLSDDLSK-------------------VTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQR  153 (353)
T ss_dssp             SSCEEEEEEEEEECTTSSB-------------------EEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCG
T ss_pred             CCCceeEEEEEEECCCCCC-------------------CCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCC
Confidence                234555655432110                   01111110 0000 011122456999999955444322    


Q ss_pred             ---------CCeEEEEECCCc------------eeEEEEeecCceeEEEEEee-CCCEEEEEEccCCcEEEEEccCce--
Q 038577          285 ---------NGVFGLYQMPDF------------VCIHLLSISREKITTAVFNE-LGNWLVFGCAKLGQLLVWEWRSES--  340 (860)
Q Consensus       285 ---------~g~i~~~~~~~~------------~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~g~i~v~d~~~~~--  340 (860)
                               .|.|.-++....            .....+.........++|.| +|+..++-...++.=.+.-+..+.  
T Consensus       154 ~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~ny  233 (353)
T 2g8s_A          154 PTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNY  233 (353)
T ss_dssp             GGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBC
T ss_pred             CccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcC
Confidence                     256777776422            01222333344678899999 454444333221111222111110  


Q ss_pred             -----------------------------EEEEecCcccCeEEEEEcC-------CCCEEEEEeCCCcEEEEECCCCeeE
Q 038577          341 -----------------------------YILKQQGHYFDVNCLAYSP-------DSQLLATGADDNKVKVWTVSSGFCF  384 (860)
Q Consensus       341 -----------------------------~~~~~~~~~~~v~~~~~s~-------~~~~l~~~~~dg~i~iwd~~~~~~~  384 (860)
                                                   ....+. +...+..++|..       +|.++++....+.|...++..+...
T Consensus       234 Gwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~  312 (353)
T 2g8s_A          234 GWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVT  312 (353)
T ss_dssp             CTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEE
T ss_pred             CCCCccCCCCCCCCccCcccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEe
Confidence                                         011111 223466777764       4667776667788888888765443


Q ss_pred             EE--e-ecCCCceEEEEEeeCCCEEEEE
Q 038577          385 VT--F-TEHTNAVTALHFMANNHSLLSA  409 (860)
Q Consensus       385 ~~--~-~~~~~~v~~i~~~~~~~~l~s~  409 (860)
                      ..  + ......+..+++.|||..+++.
T Consensus       313 ~~~~~~~~~~~rp~~v~~~pdG~lyv~t  340 (353)
T 2g8s_A          313 EDGRILTDRGQRIRDVRTGPDGYLYVLT  340 (353)
T ss_dssp             EEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred             eeEEcccCCCCceeEEEECCCCcEEEEE
Confidence            22  2 2234578999999999765543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.37  E-value=0.011  Score=59.46  Aligned_cols=146  Identities=16%  Similarity=0.312  Sum_probs=101.3

Q ss_pred             EeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCC---CCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCc-------
Q 038577          399 FMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPS---SRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGR-------  468 (860)
Q Consensus       399 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~-------  468 (860)
                      .+.++..++.+- ++.||.-++......+.+..+.   -..+..+..+|+|++||+.+..  .|.|..+..+.       
T Consensus        28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~--~V~Vv~LP~~~~~~~~~~  104 (452)
T 3pbp_A           28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN--EIFVMEVPWGYSNVEDVS  104 (452)
T ss_dssp             EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS--EEEEEECCTTCSCCCCHH
T ss_pred             EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC--eEEEEEecCccccCcccc
Confidence            344555555553 3677877777555666777663   2256789999999999999776  68888887321       


Q ss_pred             -----eEEEecC------cccCeEEEEEcCC---CCEEEEEeCCCcEEEEEccCCcc-eeEEc---------ccCCCeEE
Q 038577          469 -----LLDILSG------HEGPVHGLVFSPT---NATLASSSWDKTVRLWNVFEGKG-SVESF---------PHTHDVLT  524 (860)
Q Consensus       469 -----~~~~~~~------h~~~v~~l~~s~~---~~~l~s~~~dg~i~iwd~~~~~~-~~~~~---------~~~~~v~~  524 (860)
                           ..+.+.-      ...+|..+.|+|-   +..|++-..|+.|++||+..... ...+.         .....|.+
T Consensus       105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S  184 (452)
T 3pbp_A          105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITD  184 (452)
T ss_dssp             HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEE
T ss_pred             cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEE
Confidence                 1122221      2567999999995   56899999999999999976321 11111         12367899


Q ss_pred             EEEeeCCCEEEEEe--CCCeEEEEe
Q 038577          525 VVYRPDGRQLACST--LDGQIHFWD  547 (860)
Q Consensus       525 ~~~s~~~~~l~~~~--~dg~i~iwd  547 (860)
                      ++|.+++-.|.+.+  .+|.|+-..
T Consensus       185 ~~Fg~~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          185 LEFSKDGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             EEECTTSSCEEEEECTTSCEEEEES
T ss_pred             EEEcCCCcEEEEEecCCCCCEEEEC
Confidence            99999888777755  788887664

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.30  E-value=0.01  Score=59.37  Aligned_cols=216  Identities=13%  Similarity=0.103  Sum_probs=110.5

Q ss_pred             CcEEEEEccCceEEEEec--CcccCeEEEEEcCCCCEEEEEeC----C-----CcEEEEECCCCeeEEE--eecCCCceE
Q 038577          329 GQLLVWEWRSESYILKQQ--GHYFDVNCLAYSPDSQLLATGAD----D-----NKVKVWTVSSGFCFVT--FTEHTNAVT  395 (860)
Q Consensus       329 g~i~v~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~----d-----g~i~iwd~~~~~~~~~--~~~~~~~v~  395 (860)
                      ..+.+||..+++....-.  .....- +++.. ++..++.|+.    +     ..+.+||+.+.+-...  +........
T Consensus        39 ~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~  116 (308)
T 1zgk_A           39 SYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG  116 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred             ceEEEEcCCCCeEeECCCCCcccccc-eEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccE
Confidence            468888888776543321  111111 22222 5667777665    2     4688899877643321  111111122


Q ss_pred             EEEEeeCCCEEEEEeCC-----CcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC----CeEEEEECCC
Q 038577          396 ALHFMANNHSLLSASLD-----GTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS----FEIFVWSMKT  466 (860)
Q Consensus       396 ~i~~~~~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~i~v~d~~~  466 (860)
                      .+.  -+++.++.||.+     ..+.+||+.+.+-...-..+....-.+++.. ++.+++.|+.++    ..+.+||+.+
T Consensus       117 ~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~  193 (308)
T 1zgk_A          117 VGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPER  193 (308)
T ss_dssp             EEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred             EEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCC
Confidence            222  256667776643     3588888876543322222222111222222 567777776542    2689999987


Q ss_pred             CceEEE--ecCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEccCCcceeEE-ccc-CCCeEEEEEeeCCCEEEEE
Q 038577          467 GRLLDI--LSGHEGPVHGLVFSPTNATLASSSWD-----KTVRLWNVFEGKGSVES-FPH-THDVLTVVYRPDGRQLACS  537 (860)
Q Consensus       467 ~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~-~~~-~~~v~~~~~s~~~~~l~~~  537 (860)
                      .+-...  +......-..+.+  ++++++.|+.+     ..+.+||+.+.+-.... ... ......+.  -++++++.|
T Consensus       194 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~G  269 (308)
T 1zgk_A          194 NEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV--HQGRIYVLG  269 (308)
T ss_dssp             TEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEC
T ss_pred             CeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE--ECCEEEEEc
Confidence            654332  1111111222233  67777777654     46899998776421111 111 11112222  267777777


Q ss_pred             eCC-----CeEEEEeCCCCce
Q 038577          538 TLD-----GQIHFWDPLNGEL  553 (860)
Q Consensus       538 ~~d-----g~i~iwd~~~~~~  553 (860)
                      +.+     ..+.+||+.+.+-
T Consensus       270 G~~~~~~~~~v~~yd~~~~~W  290 (308)
T 1zgk_A          270 GYDGHTFLDSVECYDPDTDTW  290 (308)
T ss_dssp             CBCSSCBCCEEEEEETTTTEE
T ss_pred             CcCCCcccceEEEEcCCCCEE
Confidence            644     3588899877643

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.26  E-value=0.057  Score=53.98  Aligned_cols=197  Identities=12%  Similarity=0.118  Sum_probs=99.8

Q ss_pred             EEecCCCCEEEEEEc----C-------CeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEcc-------CCcE
Q 038577          270 CDYHRGLDMVVVGFS----N-------GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK-------LGQL  331 (860)
Q Consensus       270 ~~~~~~~~~l~~~~~----~-------g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-------~g~i  331 (860)
                      .+...++..++.|+.    +       ..+..||..+.+-...-..........+..-++..+++++.+       ...+
T Consensus        40 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~  119 (315)
T 4asc_A           40 SLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSV  119 (315)
T ss_dssp             EEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCE
T ss_pred             EEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceE
Confidence            334457778888874    1       237788887765433222222222222223355555665532       2468


Q ss_pred             EEEEccCceEEEEec--CcccCeEEEEEcCCCCEEEEEeC------CCcEEEEECCCCeeEEE--eecCCCceEEEEEee
Q 038577          332 LVWEWRSESYILKQQ--GHYFDVNCLAYSPDSQLLATGAD------DNKVKVWTVSSGFCFVT--FTEHTNAVTALHFMA  401 (860)
Q Consensus       332 ~v~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~  401 (860)
                      .+||..+.+......  .....-.++.  -+++.++.|+.      -..+.+||+.+.+-...  +......-.++  .-
T Consensus       120 ~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~  195 (315)
T 4asc_A          120 MCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT--VH  195 (315)
T ss_dssp             EEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE--EE
T ss_pred             EEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEE--EE
Confidence            899998876543221  1111112222  35667777775      24689999887643321  11111111222  23


Q ss_pred             CCCEEEEEeCCC-----cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC-------------CeEEEEE
Q 038577          402 NNHSLLSASLDG-----TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS-------------FEIFVWS  463 (860)
Q Consensus       402 ~~~~l~s~~~dg-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------~~i~v~d  463 (860)
                      +++.++.||.++     .+.+||+.+.+=...-..+......+++. -++++++.|+.++             ..+.+||
T Consensus       196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd  274 (315)
T 4asc_A          196 DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS-LVGTLYAIGGFATLETESGELVPTELNDIWRYN  274 (315)
T ss_dssp             TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred             CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE-ECCEEEEECCccccCcCCccccccccCcEEEec
Confidence            667777887654     47888887654332222222222122222 2556666666531             1467788


Q ss_pred             CCCCceEE
Q 038577          464 MKTGRLLD  471 (860)
Q Consensus       464 ~~~~~~~~  471 (860)
                      +.+.+-..
T Consensus       275 ~~~~~W~~  282 (315)
T 4asc_A          275 EEEKKWEG  282 (315)
T ss_dssp             TTTTEEEE
T ss_pred             CCCChhhh
Confidence            77665443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.18  E-value=0.017  Score=57.71  Aligned_cols=230  Identities=11%  Similarity=0.037  Sum_probs=116.8

Q ss_pred             CCCCEEEEEEcC----CeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEc----c----CCcEEEEEccCceE
Q 038577          274 RGLDMVVVGFSN----GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCA----K----LGQLLVWEWRSESY  341 (860)
Q Consensus       274 ~~~~~l~~~~~~----g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----~----~g~i~v~d~~~~~~  341 (860)
                      -++..++.|+.+    ..+.+||..+.+-...-..............++..+++++.    +    ...+.+||..+.+.
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W  102 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW  102 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence            345666666632    46889998776544322212212222222335565665554    1    24688899888765


Q ss_pred             EEEec--CcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCeeEEE--eecCCCceEEEEEeeCCCEEEEEeCC
Q 038577          342 ILKQQ--GHYFDVNCLAYSPDSQLLATGADD-----NKVKVWTVSSGFCFVT--FTEHTNAVTALHFMANNHSLLSASLD  412 (860)
Q Consensus       342 ~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~d  412 (860)
                      .....  ........+.+  +++.++.|+.+     ..+.+||+.+.+-...  +......-..+.+  +++.++.||.+
T Consensus       103 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~  178 (308)
T 1zgk_A          103 SPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFD  178 (308)
T ss_dssp             EECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred             eECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCC
Confidence            43321  11111222222  56677776643     3688899877643322  1111111122222  56677777654


Q ss_pred             -----CcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC----CeEEEEECCCCceEEEe--cCcccCeE
Q 038577          413 -----GTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS----FEIFVWSMKTGRLLDIL--SGHEGPVH  481 (860)
Q Consensus       413 -----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~i~v~d~~~~~~~~~~--~~h~~~v~  481 (860)
                           ..+.+||+.+.+-...-..+......+++.. ++++++.|+.++    ..+.+||+.+.+-...-  ........
T Consensus       179 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~  257 (308)
T 1zgk_A          179 GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALG  257 (308)
T ss_dssp             SSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCE
T ss_pred             CCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceE
Confidence                 4588899876543222122222111222222 567777776542    26999999877544321  11111112


Q ss_pred             EEEEcCCCCEEEEEeCC-----CcEEEEEccCCc
Q 038577          482 GLVFSPTNATLASSSWD-----KTVRLWNVFEGK  510 (860)
Q Consensus       482 ~l~~s~~~~~l~s~~~d-----g~i~iwd~~~~~  510 (860)
                      .+.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       258 ~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          258 ITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             EEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             EEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            2222  66777777654     346777776553

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.15  E-value=0.047  Score=54.61  Aligned_cols=218  Identities=9%  Similarity=0.049  Sum_probs=112.4

Q ss_pred             CcEEEEEccCceEEEEe-cCcccCeEEEEEcCCCCEEEEEeC-----C------CcEEEEECCCCeeEEEeecCCCce--
Q 038577          329 GQLLVWEWRSESYILKQ-QGHYFDVNCLAYSPDSQLLATGAD-----D------NKVKVWTVSSGFCFVTFTEHTNAV--  394 (860)
Q Consensus       329 g~i~v~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~-----d------g~i~iwd~~~~~~~~~~~~~~~~v--  394 (860)
                      ..+..||..+++....- ..........+...++..++.|+.     .      ..+.+||..+++-.. +..-..+-  
T Consensus        13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~   91 (315)
T 4asc_A           13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MPPLPSPRCL   91 (315)
T ss_dssp             TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CCCBSSCEES
T ss_pred             CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-CCCCCcchhc
Confidence            57889999888764321 111122333344557788888873     1      127788887765322 21111111  


Q ss_pred             EEEEEeeCCCEEEEEeCC--------CcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEec-CC----CeEEE
Q 038577          395 TALHFMANNHSLLSASLD--------GTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTL-DS----FEIFV  461 (860)
Q Consensus       395 ~~i~~~~~~~~l~s~~~d--------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~----~~i~v  461 (860)
                      .+++. -+++.++.||.+        ..+.+||..+.+=...-..+....-.+++. .++++++.|+. ++    ..+.+
T Consensus        92 ~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~  169 (315)
T 4asc_A           92 FGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCV  169 (315)
T ss_dssp             CEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEE
T ss_pred             eeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEE
Confidence            11222 256666677632        358889987754222212222222122222 45667777765 21    26899


Q ss_pred             EECCCCceEEEe--cCcccCeEEEEEcCCCCEEEEEeCCC-----cEEEEEccCCcceeEEc-c-cCCCeEEEEEeeCCC
Q 038577          462 WSMKTGRLLDIL--SGHEGPVHGLVFSPTNATLASSSWDK-----TVRLWNVFEGKGSVESF-P-HTHDVLTVVYRPDGR  532 (860)
Q Consensus       462 ~d~~~~~~~~~~--~~h~~~v~~l~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~-~-~~~~v~~~~~s~~~~  532 (860)
                      ||..+.+-...-  ......-..+.+  ++++++.|+.++     .+.+||+.+.+-..... . .......+  .-+++
T Consensus       170 yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~  245 (315)
T 4asc_A          170 YDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLV--SLVGT  245 (315)
T ss_dssp             EETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEE--EETTE
T ss_pred             EeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEE--EECCE
Confidence            999876543322  111111122222  677788887654     47888887764211111 1 11111222  23677


Q ss_pred             EEEEEeCCC--------------eEEEEeCCCCce
Q 038577          533 QLACSTLDG--------------QIHFWDPLNGEL  553 (860)
Q Consensus       533 ~l~~~~~dg--------------~i~iwd~~~~~~  553 (860)
                      +++.|+.++              .+.+||+.+.+-
T Consensus       246 l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W  280 (315)
T 4asc_A          246 LYAIGGFATLETESGELVPTELNDIWRYNEEEKKW  280 (315)
T ss_dssp             EEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEE
T ss_pred             EEEECCccccCcCCccccccccCcEEEecCCCChh
Confidence            777776532              377888877643

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.13  E-value=0.35  Score=50.75  Aligned_cols=108  Identities=16%  Similarity=0.166  Sum_probs=63.7

Q ss_pred             cCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEE--Eee-------cCCceeEEEECCC---CCEEEEE-e-------
Q 038577           53 SNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLH--RVR-------FKYPVNAILFSPN---GKYIAVG-T-------  112 (860)
Q Consensus        53 ~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~--~~~-------~~~~v~~~~fspd---g~~la~~-~-------  112 (860)
                      .....|+|.|||+++++-...+.|.+++..+++...  .+.       .......|+|+||   +.+|.+. .       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            456799999999977765544578888866555432  222       1244669999995   5555444 2       


Q ss_pred             ------CCeEEEEeCCCCCcccceeE-EEEEeec-cCCCeEEEEEcCCCCeEEEee
Q 038577          113 ------GKLVQIWRSPGFKKEVFAFE-LIRTLAD-CNDKVTALNWSPDSNYLLVGS  160 (860)
Q Consensus       113 ------~~~i~iwd~~~~~~~~~~~~-~~~~~~~-h~~~v~~l~~s~d~~~l~s~~  160 (860)
                            ...|.-|+...........+ ++..+.. .......|+|.|||.+.++.+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                  23566666543321111111 2222321 123468999999998777654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.12  E-value=0.0071  Score=54.69  Aligned_cols=144  Identities=15%  Similarity=0.056  Sum_probs=81.0

Q ss_pred             cCeeEEEEcCCCCEEEEEcCCCcEEEEEccc-------CeEEEEeec--CCceeEEEECCCCCEEEEEeCCeEEEEeCCC
Q 038577           53 SNICRIAVSPDGTFLLTVDENQRCHFINLHC-------HVVLHRVRF--KYPVNAILFSPNGKYIAVGTGKLVQIWRSPG  123 (860)
Q Consensus        53 ~~v~~va~spdg~~la~~~~d~~i~vwd~~~-------~~~~~~~~~--~~~v~~~~fspdg~~la~~~~~~i~iwd~~~  123 (860)
                      ..++.++|+|+|.+.|+  .+|.+.-.+..+       +. -..+..  -..-.++.|.|+|.+.++ .++.|+-++.++
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s-~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR-AKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH-CEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc-ccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCc
Confidence            47889999999997776  567766666544       21 111110  011478999999999999 889998888755


Q ss_pred             CCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEee-cCCCcEEEEEEccCCC
Q 038577          124 FKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLL-GHRDSVVGCFFSVDKK  202 (860)
Q Consensus       124 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~  202 (860)
                      .....-...-...-.+--..+..|.|.|+|.+-+..  |+.+.-+.........+......+. +.-.....+.|.+++.
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~  194 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT  194 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence            332110000000011112457999999999876666  7775433332221110101112222 3334455577888885

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.08  E-value=0.014  Score=59.84  Aligned_cols=237  Identities=8%  Similarity=0.000  Sum_probs=114.2

Q ss_pred             CCCEEEEEEccCCcEEEEEccC--ceEEEE--ec-CcccCeEEEEEcCCCCEEEEEeC-C---------CcEEEEECCCC
Q 038577          317 LGNWLVFGCAKLGQLLVWEWRS--ESYILK--QQ-GHYFDVNCLAYSPDSQLLATGAD-D---------NKVKVWTVSSG  381 (860)
Q Consensus       317 ~~~~l~~~~~~~g~i~v~d~~~--~~~~~~--~~-~~~~~v~~~~~s~~~~~l~~~~~-d---------g~i~iwd~~~~  381 (860)
                      ++..+++++.....+.+||..+  .+....  +. .....-.++.+  ++.+++.|+. +         ..+.+||+.+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            4555555555556788888864  332221  11 11111222222  5667777765 2         46889998876


Q ss_pred             eeEEEeecC-CCceEEEEEeeCCCEEEEEeCC---------------------------------------CcEEEEEcc
Q 038577          382 FCFVTFTEH-TNAVTALHFMANNHSLLSASLD---------------------------------------GTVRAWDLF  421 (860)
Q Consensus       382 ~~~~~~~~~-~~~v~~i~~~~~~~~l~s~~~d---------------------------------------g~i~~wd~~  421 (860)
                      +-...-... .......+...+++.++.||.+                                       ..+.+||+.
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~  176 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS  176 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred             cEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence            433221111 1111111222567777888765                                       468889987


Q ss_pred             ccceeeEeeCCCCCcE-EEEEECCCCCEEEEEecC-----CCeEEEEEC--CCCceEEE--ecCcccCeEEEEEcCCCCE
Q 038577          422 RYRNFRTFTTPSSRQF-VSLASDQSGEVICAGTLD-----SFEIFVWSM--KTGRLLDI--LSGHEGPVHGLVFSPTNAT  491 (860)
Q Consensus       422 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~-----~~~i~v~d~--~~~~~~~~--~~~h~~~v~~l~~s~~~~~  491 (860)
                      +.+=...-..+..... .+++. -++++++.|+.+     ...+..||+  .+.+-...  +..........+...++++
T Consensus       177 ~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i  255 (357)
T 2uvk_A          177 TQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSL  255 (357)
T ss_dssp             TTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEE
T ss_pred             CCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEE
Confidence            7543333222322121 22222 255666666532     126788887  44333221  1111111111122236677


Q ss_pred             EEEEeCC----------------------CcEEEEEccCCccee--EEcccCCCeEEEEEeeCCCEEEEEeCCC------
Q 038577          492 LASSSWD----------------------KTVRLWNVFEGKGSV--ESFPHTHDVLTVVYRPDGRQLACSTLDG------  541 (860)
Q Consensus       492 l~s~~~d----------------------g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg------  541 (860)
                      ++.|+.+                      ..+.+||+.+.+-..  ..........  +...++++++.|+.++      
T Consensus       256 yv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~--~~~~~~~i~v~GG~~~~~~~~~  333 (357)
T 2uvk_A          256 IFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGV--SLPWNNSLLIIGGETAGGKAVT  333 (357)
T ss_dssp             EEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSE--EEEETTEEEEEEEECGGGCEEE
T ss_pred             EEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccce--eEEeCCEEEEEeeeCCCCCEee
Confidence            7777632                      247789987654221  1111111122  2334788888888543      


Q ss_pred             eEEEEeCCCCceeEEEe
Q 038577          542 QIHFWDPLNGELMYTIE  558 (860)
Q Consensus       542 ~i~iwd~~~~~~~~~~~  558 (860)
                      .+.++++++++.+....
T Consensus       334 ~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          334 DSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             EEEEEEC-CCSCEEEC-
T ss_pred             eEEEEEEcCcEeEeeec
Confidence            36677888887765543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.94  E-value=0.18  Score=52.58  Aligned_cols=240  Identities=10%  Similarity=0.052  Sum_probs=144.8

Q ss_pred             EEEEEeCCCcEEEEECCCCeeEEEeec-------------------------CCCceE--EEEEe---eCCCEEEEEe-C
Q 038577          363 LLATGADDNKVKVWTVSSGFCFVTFTE-------------------------HTNAVT--ALHFM---ANNHSLLSAS-L  411 (860)
Q Consensus       363 ~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------------------~~~~v~--~i~~~---~~~~~l~s~~-~  411 (860)
                      .+.+|+..|.|+|+-+.+++.+..+.-                         ..+...  .+.+.   .||++|+.-. .
T Consensus        72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka  151 (638)
T 3sbq_A           72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA  151 (638)
T ss_dssp             EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence            367888899999999999988877632                         011111  22332   3677887776 4


Q ss_pred             CCcEEEEEccccceeeEeeCCCCCcEEEEEEC--CCCCEEEEEecCC-------CeE-----------EEEECCCCceEE
Q 038577          412 DGTVRAWDLFRYRNFRTFTTPSSRQFVSLASD--QSGEVICAGTLDS-------FEI-----------FVWSMKTGRLLD  471 (860)
Q Consensus       412 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~-------~~i-----------~v~d~~~~~~~~  471 (860)
                      +..|...++...++-+.+..|....+..+.+.  |+..++++++...       ..+           ...|..+.+...
T Consensus       152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~  231 (638)
T 3sbq_A          152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF  231 (638)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred             CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence            56788889999999999999988888888886  7888888876531       111           112222222222


Q ss_pred             EecCcccCeEEEEEcCCCCEEEEEeCCC---------------cEEEEEc-------------------------cC---
Q 038577          472 ILSGHEGPVHGLVFSPTNATLASSSWDK---------------TVRLWNV-------------------------FE---  508 (860)
Q Consensus       472 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg---------------~i~iwd~-------------------------~~---  508 (860)
                      .+. -.+....+...+++++.++.+...               .+.++++                         +.   
T Consensus       232 Qv~-v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~  310 (638)
T 3sbq_A          232 QVI-VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDG  310 (638)
T ss_dssp             EEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTT
T ss_pred             EEE-cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccc
Confidence            211 122333455577788877766431               2444544                         22   


Q ss_pred             -CcceeEEcccCCCeEEEEEeeCCCEEEEEeC-CCeEEEEeCCCCceeEE--EecccccCCCccccccccccccCCCCcE
Q 038577          509 -GKGSVESFPHTHDVLTVVYRPDGRQLACSTL-DGQIHFWDPLNGELMYT--IEGRRDISGGRLMTDRRSAANSSSGKCF  584 (860)
Q Consensus       509 -~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i  584 (860)
                       +.......+-......+.++|||+++++++. +.++.++|.........  +...++          .......-+...
T Consensus       311 ~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~----------~~~ae~e~GlGP  380 (638)
T 3sbq_A          311 KDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRD----------VIVGEPELGLGP  380 (638)
T ss_dssp             BCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGG----------GEEECCBCCSCE
T ss_pred             cCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCccc----------ceEeeccCCCcc
Confidence             1112222223334456789999999988764 67799999864211000  000000          001111224567


Q ss_pred             EEEEEecCCCEEEEecCCCeEEEEECCCc
Q 038577          585 TTLCYSADGSYILAGGSSKYICMYDVADQ  613 (860)
Q Consensus       585 ~~l~~s~~g~~l~~~~~dg~v~vwd~~~~  613 (860)
                      ...+|.++|.-..+-.-|..|.-|++...
T Consensus       381 lHt~Fd~~G~aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          381 LHTTFDGRGNAYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             EEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred             cEEEECCCCceEeeeeecceEEEEeccHH
Confidence            99999999955556668999999999875

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.92  E-value=0.047  Score=49.41  Aligned_cols=114  Identities=11%  Similarity=0.147  Sum_probs=68.6

Q ss_pred             CceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcc-cceeEEEEEee--ccCCCeEEEEEcCCCCeEEEeecCCeEEEEee
Q 038577           94 YPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKE-VFAFELIRTLA--DCNDKVTALNWSPDSNYLLVGSKDLAVRLFYV  170 (860)
Q Consensus        94 ~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~-~~~~~~~~~~~--~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~  170 (860)
                      ..+.+++|+|+|.+.|+ .++.++-.+..+.... +..  ....+-  +... -.++.|.|+|.+.++  .||.|.-++.
T Consensus        41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~--s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMG--RAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHH--HCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred             ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccc--cccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCC
Confidence            46889999999998888 8888777776543211 000  001111  1122 478999999987777  5688887775


Q ss_pred             cccccCcccccceEe-ecCCCcEEEEEEccCCCCCccceEEEEcCCccEEE
Q 038577          171 KEKLKGIHTNKPFLL-LGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFS  220 (860)
Q Consensus       171 ~~~~~~~~~~~~~~~-~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~  220 (860)
                      .+.....+...-..+ .+-=..+..+.|.|+|.      |+... |+.+.-
T Consensus       115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~------Lyav~-dg~lyr  158 (236)
T 1tl2_A          115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY------LYAVH-GQQFYK  158 (236)
T ss_dssp             CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC------EEEEE-TTEEEE
T ss_pred             CcCCCCceeccccEeccCCCCceEEEEECCCce------EEEEe-CCcEEe
Confidence            433111111111111 11224678999999995      66666 777544

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.90  E-value=0.37  Score=47.26  Aligned_cols=213  Identities=9%  Similarity=0.011  Sum_probs=125.4

Q ss_pred             cCCCCEEEEEEc--CCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccC-------------CcEEEEEcc
Q 038577          273 HRGLDMVVVGFS--NGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKL-------------GQLLVWEWR  337 (860)
Q Consensus       273 ~~~~~~l~~~~~--~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~-------------g~i~v~d~~  337 (860)
                      ++++..++....  ++.|...+... .....+...    .+--++++|.+|..+...+             ..|+..++.
T Consensus        22 ~~~g~~iy~~n~~d~~~ly~~~~dg-~~~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d   96 (302)
T 3s25_A           22 CESDGEVFFSNTNDNGRLYAMNIDG-SNIHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN   96 (302)
T ss_dssp             EEETTEEEEEEGGGTTEEEEEETTS-CSCEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred             EEeCCEEEEEeCCCCceEEEEcCCC-CCCEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence            356777776653  46677777643 333333322    2356689999999987653             357777777


Q ss_pred             CceEEEEecCcccCeEEEEEcCCCCEEEEEe----CCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeC-C
Q 038577          338 SESYILKQQGHYFDVNCLAYSPDSQLLATGA----DDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASL-D  412 (860)
Q Consensus       338 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-d  412 (860)
                      ..........     .+..++++++.|+-..    ....|...++... ....+..+..    ..++++++.|+-.+. .
T Consensus        97 g~~~~~l~~~-----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-~~~~lt~~~~----~~~~~~g~~iy~t~~g~  166 (302)
T 3s25_A           97 GHGSTVLDPD-----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGE-EKKKIKNHYL----FTCNTSDRYFYYNNPKN  166 (302)
T ss_dssp             SCCCEEEECS-----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSC-CCEEEESSCC----CCSEEETTEEEEECTTT
T ss_pred             CCcceEeecC-----CccEEEEeCCEEEEEeecCCCCceEEEEECCCC-CeEEEeCCCc----eEeeEECCEEEEEeCCC
Confidence            6653332221     1236777888888776    2345666666533 3344443432    346788888876654 5


Q ss_pred             CcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC-CeEEEEECCCCceEEEecCcccCeEEEEEcCCCCE
Q 038577          413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS-FEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNAT  491 (860)
Q Consensus       413 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~  491 (860)
                      ..|...++......+.+.  .  .. ...+.|++.+|+.....+ ..|..-++..+.. ..+.  ...+  ..|+|++++
T Consensus       167 ~~Iy~~~l~g~~~~~l~~--~--~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt--~~~~--~~~~~~g~~  236 (302)
T 3s25_A          167 GQLYRYDTASQSEALFYD--C--NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLT--EANI--EHYNVYGSL  236 (302)
T ss_dssp             CCEEEEETTTTEEEEEEC--S--CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECS--CSCE--EEEEEETTE
T ss_pred             ceEEEEECCCCCEEEEeC--C--Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEe--CCCc--ceEEECCCE
Confidence            678887776554433322  1  11 223569999988776542 4788888876553 3333  2233  347888988


Q ss_pred             EEEEeC--CCcEEEEEccCCc
Q 038577          492 LASSSW--DKTVRLWNVFEGK  510 (860)
Q Consensus       492 l~s~~~--dg~i~iwd~~~~~  510 (860)
                      |..++.  .+.|..-++....
T Consensus       237 Iy~~~~~~~~~i~~~~~DG~~  257 (302)
T 3s25_A          237 IFYQRGGDNPALCVVKNDGTG  257 (302)
T ss_dssp             EEEEECSSSCEEEEEETTSCC
T ss_pred             EEEEECCCCcEEEEEECCCCc
Confidence            876643  3556666665543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.88  E-value=0.58  Score=49.12  Aligned_cols=159  Identities=13%  Similarity=0.078  Sum_probs=86.2

Q ss_pred             CCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEee------cCCCcEEEEEEccC---CCCCccceEEE
Q 038577          141 NDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLL------GHRDSVVGCFFSVD---KKTDKVNRIYT  211 (860)
Q Consensus       141 ~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~------~h~~~i~~~~~~~~---~~~~~~~~l~s  211 (860)
                      -...+.|+|.|||+++++-...+.|++++...+ ..   .....+.      ...+....++|+|+   +.     .|+.
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g-~~---~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g-----~lYv   96 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESG-SV---KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNP-----YIYI   96 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTC-CE---EEEEECTTCCCCTTSSCSEEEEEECTTTTTSC-----EEEE
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCC-cE---eEEecCCccccccCCCCceeEEEECCCcCcCC-----EEEE
Confidence            345689999999986666543346888875443 11   1111121      13567789999996   33     4554


Q ss_pred             EcC-------------CccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCE
Q 038577          212 IAR-------------DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDM  278 (860)
Q Consensus       212 ~~~-------------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  278 (860)
                      +..             ...|.-++......                   .+..........-.........++|.|+|.+
T Consensus        97 ~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~-------------------~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~L  157 (454)
T 1cru_A           97 SGTFKNPKSTDKELPNQTIIRRYTYNKSTD-------------------TLEKPVDLLAGLPSSKDHQSGRLVIGPDQKI  157 (454)
T ss_dssp             EEEEECTTC--CCSCEEEEEEEEEEETTTT-------------------EEEEEEEEEEEECCCSSCCEEEEEECTTSCE
T ss_pred             EEeccccCCCccccccccEEEEEEECCCCC-------------------CcCCcEEEEEcCCCCCCCCCCeEeECCCCeE
Confidence            432             23455555543211                   0001111111001112235789999999987


Q ss_pred             EEEEEc--------------------------------CCeEEEEECCCce-----------eEEEEeecCceeEEEEEe
Q 038577          279 VVVGFS--------------------------------NGVFGLYQMPDFV-----------CIHLLSISREKITTAVFN  315 (860)
Q Consensus       279 l~~~~~--------------------------------~g~i~~~~~~~~~-----------~~~~~~~~~~~i~~~~~s  315 (860)
                      .++.+.                                .|.|.-++.. +.           ....+.........++|.
T Consensus       158 yv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~d-G~ip~~Npf~~~~~~ei~a~G~RNp~gla~d  236 (454)
T 1cru_A          158 YYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLD-GSIPKDNPSFNGVVSHIYTLGHRNPQGLAFT  236 (454)
T ss_dssp             EEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTT-SCCCTTCCEETTEECSEEEBCCSEEEEEEEC
T ss_pred             EEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCC-CCCCCCCCCCCCCcceEEEECCCCcceEEEC
Confidence            665432                                2455555543 32           223333344567889999


Q ss_pred             eCCCEEEEEEccC
Q 038577          316 ELGNWLVFGCAKL  328 (860)
Q Consensus       316 ~~~~~l~~~~~~~  328 (860)
                      ++|+..++-...+
T Consensus       237 p~G~L~~~d~g~~  249 (454)
T 1cru_A          237 PNGKLLQSEQGPN  249 (454)
T ss_dssp             TTSCEEEEEECSS
T ss_pred             CCCCEEEEecCCC
Confidence            9887766655443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.87  E-value=0.1  Score=52.22  Aligned_cols=186  Identities=11%  Similarity=0.116  Sum_probs=91.1

Q ss_pred             EEEEEeCCCcEEEEECCCCeeEEE-eecCCCceEEEEEeeCCCEEEEEeC----CC-------cEEEEEccccceeeEee
Q 038577          363 LLATGADDNKVKVWTVSSGFCFVT-FTEHTNAVTALHFMANNHSLLSASL----DG-------TVRAWDLFRYRNFRTFT  430 (860)
Q Consensus       363 ~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~s~~~----dg-------~i~~wd~~~~~~~~~~~  430 (860)
                      .++.|+.  .+..||..+++-... +..............++..++.||.    ++       .+..||..+.+-...-.
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   95 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP   95 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence            3444443  488999887764431 1111122222333456777788873    12       16778876654322212


Q ss_pred             CCCCCcEEEEEECCCCCEEEEEecC--C----CeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeC------C
Q 038577          431 TPSSRQFVSLASDQSGEVICAGTLD--S----FEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSW------D  498 (860)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~------d  498 (860)
                      .+....-.+++.. ++.+++.|+.+  +    ..+.+||..+.+-...-..........+...++++++.|+.      -
T Consensus        96 ~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~  174 (318)
T 2woz_A           96 LPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCT  174 (318)
T ss_dssp             BSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBC
T ss_pred             CCccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCcc
Confidence            2222111222222 56677777653  1    26889999876644321111111111111236777777764      2


Q ss_pred             CcEEEEEccCCcceeEE-cccCCCeEEEEEeeCCCEEEEEeCC-----CeEEEEeCCCCc
Q 038577          499 KTVRLWNVFEGKGSVES-FPHTHDVLTVVYRPDGRQLACSTLD-----GQIHFWDPLNGE  552 (860)
Q Consensus       499 g~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~  552 (860)
                      ..+.+||+.+.+-.... ......-.+++. -++++++.|+.+     ..+.+||+.+.+
T Consensus       175 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          175 NRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             ceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence            35889998776421111 111111112222 367777777643     347788887764

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.87  E-value=0.16  Score=50.83  Aligned_cols=218  Identities=13%  Similarity=0.122  Sum_probs=109.6

Q ss_pred             cEEEEEccCceEEEEe-cCcccCeEEEEEcCCCCEEEEEeC----CC-------cEEEEECCCCeeEEE--eecCCCceE
Q 038577          330 QLLVWEWRSESYILKQ-QGHYFDVNCLAYSPDSQLLATGAD----DN-------KVKVWTVSSGFCFVT--FTEHTNAVT  395 (860)
Q Consensus       330 ~i~v~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~----dg-------~i~iwd~~~~~~~~~--~~~~~~~v~  395 (860)
                      .+..||..+++..... ..............++..++.|+.    ++       .+.+||..+.+-...  +...... .
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~  103 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-F  103 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-C
T ss_pred             ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-c
Confidence            4788888887754421 111112223334557788888873    12       177888876643321  1111111 1


Q ss_pred             EEEEeeCCCEEEEEeCC-------CcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC-----CeEEEEE
Q 038577          396 ALHFMANNHSLLSASLD-------GTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS-----FEIFVWS  463 (860)
Q Consensus       396 ~i~~~~~~~~l~s~~~d-------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~i~v~d  463 (860)
                      +++. -+++.++.||.+       ..+.+||..+.+-...-..+....-.+++. .++++++.|+.+.     ..+.+||
T Consensus       104 ~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd  181 (318)
T 2woz_A          104 GLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYN  181 (318)
T ss_dssp             EEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEE
T ss_pred             ceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEc
Confidence            2222 256677777754       247788887654332222222211122222 4666777766421     2699999


Q ss_pred             CCCCceEEEe--cCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEccCCcceeEE-cc-cCCCeEEEEEeeCCCEE
Q 038577          464 MKTGRLLDIL--SGHEGPVHGLVFSPTNATLASSSWD-----KTVRLWNVFEGKGSVES-FP-HTHDVLTVVYRPDGRQL  534 (860)
Q Consensus       464 ~~~~~~~~~~--~~h~~~v~~l~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~-~~-~~~~v~~~~~s~~~~~l  534 (860)
                      ..+.+-...-  ......-..+.+  ++++++.|+.+     ..+.+||+.+.+-.... .. ...... + ..-+++++
T Consensus       182 ~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~-~-~~~~~~i~  257 (318)
T 2woz_A          182 PKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSIS-L-VSLAGSLY  257 (318)
T ss_dssp             TTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCE-E-EEETTEEE
T ss_pred             CCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceE-E-EEECCEEE
Confidence            9887644332  111111122222  67777777654     34678888776421111 11 111112 2 22367777


Q ss_pred             EEEeCC--------------CeEEEEeCCCCcee
Q 038577          535 ACSTLD--------------GQIHFWDPLNGELM  554 (860)
Q Consensus       535 ~~~~~d--------------g~i~iwd~~~~~~~  554 (860)
                      +.|+.+              ..+.+||+.+.+-.
T Consensus       258 v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~  291 (318)
T 2woz_A          258 AIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWA  291 (318)
T ss_dssp             EECCBCCBC----CCBCCBCCCEEEEETTTTEEE
T ss_pred             EECCeeccCCCCceeccceeeeEEEEeCCCCEeh
Confidence            777653              34788888776543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.79  E-value=0.0075  Score=59.86  Aligned_cols=190  Identities=11%  Similarity=0.100  Sum_probs=106.1

Q ss_pred             CEEEEEeCCCcEEEEECCCCeeEEEeecC-CCceEEEEEe--eCCCEEEEE--eCCCcEEEEEccccceeeEeeCCCC--
Q 038577          362 QLLATGADDNKVKVWTVSSGFCFVTFTEH-TNAVTALHFM--ANNHSLLSA--SLDGTVRAWDLFRYRNFRTFTTPSS--  434 (860)
Q Consensus       362 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~--~~~~~l~s~--~~dg~i~~wd~~~~~~~~~~~~~~~--  434 (860)
                      ..+++++.||.|.-+|..+|+....+... ..++....-.  +.+..++.+  ..||.+..++..++.....+..+..  
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            47888999999999999999999888654 1222221100  112234433  5899999999887755444433211  


Q ss_pred             -CcEEE---EEE-C----CCCCEEEEEecCCCeEEEEECCCCceEEEecCcc--cC-----eEEEEEc-----CCCCEEE
Q 038577          435 -RQFVS---LAS-D----QSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHE--GP-----VHGLVFS-----PTNATLA  493 (860)
Q Consensus       435 -~~~~~---~~~-~----~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~--~~-----v~~l~~s-----~~~~~l~  493 (860)
                       .++..   ..+ .    ..+..+++++.++ .++..|+.+|+.+..+....  +.     ..|....     ..+..++
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g-~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~  169 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRT-IMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV  169 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEE-EEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCC-EEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence             11111   001 0    1456778888888 99999999999999886321  11     1111110     1234566


Q ss_pred             EEeCCCcEEEEEccCCcceeEEc-----ccCCC--e-EEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeE
Q 038577          494 SSSWDKTVRLWNVFEGKGSVESF-----PHTHD--V-LTVVYRPDGRQLACSTLDGQIHFWDPLNGELMY  555 (860)
Q Consensus       494 s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~--v-~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  555 (860)
                      .+..+..+.+.+ .+++ .....     .....  + ..-..+.|+.+ +.++.||.|.-+|..+|+.+.
T Consensus       170 ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          170 IGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             EecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            666666666655 3332 11100     00000  0 00001224565 457889999999999998876

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.38  E-value=0.13  Score=52.40  Aligned_cols=234  Identities=13%  Similarity=0.040  Sum_probs=111.7

Q ss_pred             CCCEEEEEEcC-CeEEEEECCC--ceeEEEEeec-CceeEEEEEeeCCCEEEEEEc-c--------CCcEEEEEccCceE
Q 038577          275 GLDMVVVGFSN-GVFGLYQMPD--FVCIHLLSIS-REKITTAVFNELGNWLVFGCA-K--------LGQLLVWEWRSESY  341 (860)
Q Consensus       275 ~~~~l~~~~~~-g~i~~~~~~~--~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~-~--------~g~i~v~d~~~~~~  341 (860)
                      ++.+++.|+.+ ..+..||...  .+-...-... .......+..-++..+++++. +        ...+.+||..+.+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W   98 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW   98 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence            55666666543 5788899863  2222111111 112222222335666666654 1        24688999988765


Q ss_pred             EEEecCc-ccCeEEEEEcCCCCEEEEEeCC---------------------------------------CcEEEEECCCC
Q 038577          342 ILKQQGH-YFDVNCLAYSPDSQLLATGADD---------------------------------------NKVKVWTVSSG  381 (860)
Q Consensus       342 ~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d---------------------------------------g~i~iwd~~~~  381 (860)
                      ....... .......+...++++++.|+.+                                       ..+.+||+.+.
T Consensus        99 ~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~  178 (357)
T 2uvk_A           99 VKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQ  178 (357)
T ss_dssp             EECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTT
T ss_pred             EECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCC
Confidence            4432211 1111111122467788888754                                       47899998876


Q ss_pred             eeEE--EeecCCCceEEEEEeeCCCEEEEEeC------CCcEEEEEc--cccc--eeeEeeCCCCCcEEEEEECCCCCEE
Q 038577          382 FCFV--TFTEHTNAVTALHFMANNHSLLSASL------DGTVRAWDL--FRYR--NFRTFTTPSSRQFVSLASDQSGEVI  449 (860)
Q Consensus       382 ~~~~--~~~~~~~~v~~i~~~~~~~~l~s~~~------dg~i~~wd~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l  449 (860)
                      +-..  .+......-.+++. -+++.++.||.      ...+..||+  .+.+  .+..+..+.. .....+...+++++
T Consensus       179 ~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~iy  256 (357)
T 2uvk_A          179 QWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG-VAGGFAGISNDSLI  256 (357)
T ss_dssp             EEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC-CBSCEEEEETTEEE
T ss_pred             cEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc-cccceEEEECCEEE
Confidence            4332  22211111022332 25566666654      235777876  3322  1111111111 11111223356666


Q ss_pred             EEEecCC---------------------CeEEEEECCCCceEE--EecCcccCeEEEEEcCCCCEEEEEeCCC------c
Q 038577          450 CAGTLDS---------------------FEIFVWSMKTGRLLD--ILSGHEGPVHGLVFSPTNATLASSSWDK------T  500 (860)
Q Consensus       450 ~~~~~~~---------------------~~i~v~d~~~~~~~~--~~~~h~~~v~~l~~s~~~~~l~s~~~dg------~  500 (860)
                      +.|+.+.                     ..+.+||+.+.+-..  .+......-.+  ...++++++.|+.++      .
T Consensus       257 v~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v~GG~~~~~~~~~~  334 (357)
T 2uvk_A          257 FAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVS--LPWNNSLLIIGGETAGGKAVTD  334 (357)
T ss_dssp             EECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEE--EEETTEEEEEEEECGGGCEEEE
T ss_pred             EEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccccee--EEeCCEEEEEeeeCCCCCEeee
Confidence            7766321                     157899988765433  33222222222  233778888888653      3


Q ss_pred             EEEEEccCCcce
Q 038577          501 VRLWNVFEGKGS  512 (860)
Q Consensus       501 i~iwd~~~~~~~  512 (860)
                      |.++++++++..
T Consensus       335 v~~l~~~~~~~~  346 (357)
T 2uvk_A          335 SVLITVKDNKVT  346 (357)
T ss_dssp             EEEEEC-CCSCE
T ss_pred             EEEEEEcCcEeE
Confidence            556687777643

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.33  E-value=0.12  Score=51.31  Aligned_cols=191  Identities=7%  Similarity=-0.064  Sum_probs=105.4

Q ss_pred             CEEEEEEcCCeEEEEECCCceeEEEEeecC-ceeEEEEE--eeCCCEEEEEE-ccCCcEEEEEccCceEEEEecC----c
Q 038577          277 DMVVVGFSNGVFGLYQMPDFVCIHLLSISR-EKITTAVF--NELGNWLVFGC-AKLGQLLVWEWRSESYILKQQG----H  348 (860)
Q Consensus       277 ~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~-~~i~~~~~--s~~~~~l~~~~-~~~g~i~v~d~~~~~~~~~~~~----~  348 (860)
                      ..+++++.||.|.-+|..+|+....+.... .++....-  .+.+..+++.. ..+|.|..++..+|.....+..    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            478999999999999999999998887651 12211100  01122444443 4569999999988866554421    1


Q ss_pred             ccCeEE---EEE-----cCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCC--c-----eEEEEEe-----eCCCEEEE
Q 038577          349 YFDVNC---LAY-----SPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTN--A-----VTALHFM-----ANNHSLLS  408 (860)
Q Consensus       349 ~~~v~~---~~~-----s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~-----v~~i~~~-----~~~~~l~s  408 (860)
                      ..++..   ..+     +..+..+++|+.+|.+...|+.+|+.+..+.....  .     ..|....     ..+..++.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i  170 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI  170 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence            112221   000     01355788999999999999999999998864321  0     0111110     11345666


Q ss_pred             EeCCCcEEEEEccccceeeEee-----CCCCC-cE-EEEEECCCCCEEEEEecCCCeEEEEECCCCceEE
Q 038577          409 ASLDGTVRAWDLFRYRNFRTFT-----TPSSR-QF-VSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLD  471 (860)
Q Consensus       409 ~~~dg~i~~wd~~~~~~~~~~~-----~~~~~-~~-~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~  471 (860)
                      +..+..+.+.+ ++++ ...+.     ..... .+ .....+.++.+ +++..++ .|+-+|..+|+.+.
T Consensus       171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg-~v~A~d~~~G~~~W  236 (339)
T 2be1_A          171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDK-SLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTT-EEEEECSTTCCEEE
T ss_pred             ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCC-EEEEEECCCCcEEE
Confidence            66666666555 3332 11111     00000 00 00001224555 3466666 88888888888765

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.72  E-value=0.47  Score=53.15  Aligned_cols=196  Identities=13%  Similarity=0.139  Sum_probs=106.4

Q ss_pred             CCCCEEEEEeCC----CcEEEEECCCCeeEEEe-e------cCCCceEEEEEee-CCCEEEEEeCCC------cEEEEEc
Q 038577          359 PDSQLLATGADD----NKVKVWTVSSGFCFVTF-T------EHTNAVTALHFMA-NNHSLLSASLDG------TVRAWDL  420 (860)
Q Consensus       359 ~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~-~------~~~~~v~~i~~~~-~~~~l~s~~~dg------~i~~wd~  420 (860)
                      .++..++.|+.+    ..+.+||..++.-...- .      .....-.+++..+ +++.++.||.++      .+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456677777743    46888998776533322 1      1111112333333 677777777543      4788888


Q ss_pred             cccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCC-eEEEEECCCCceEEEec-----CcccCeEEEEEcCC-CCEEE
Q 038577          421 FRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSF-EIFVWSMKTGRLLDILS-----GHEGPVHGLVFSPT-NATLA  493 (860)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~i~v~d~~~~~~~~~~~-----~h~~~v~~l~~s~~-~~~l~  493 (860)
                      .+.+-...-..+....-.+++.-.++.+++.|+.++. .+.+||..+.+-...-.     .....-..+.+..+ ++.++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII  555 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence            7743222222222222233444347888888876543 58999998876443221     11112233555555 66777


Q ss_pred             EEeC--C-----CcEEEEEccCCcc-----eeEEc---ccCCCeEEEEEeeCCCEEEEEeCC--------CeEEEEeCCC
Q 038577          494 SSSW--D-----KTVRLWNVFEGKG-----SVESF---PHTHDVLTVVYRPDGRQLACSTLD--------GQIHFWDPLN  550 (860)
Q Consensus       494 s~~~--d-----g~i~iwd~~~~~~-----~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iwd~~~  550 (860)
                      .|+.  +     ..+.+||+.+..-     -....   .....-.+++...++++++.|+.+        ..+.+||+.+
T Consensus       556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t  635 (695)
T 2zwa_A          556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS  635 (695)
T ss_dssp             ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred             ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence            7765  2     3588999887751     01111   111111223333347777777742        4589999987


Q ss_pred             Ccee
Q 038577          551 GELM  554 (860)
Q Consensus       551 ~~~~  554 (860)
                      .+-.
T Consensus       636 ~~W~  639 (695)
T 2zwa_A          636 ETLT  639 (695)
T ss_dssp             TEEE
T ss_pred             CeEE
Confidence            7543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.35  E-value=2  Score=48.06  Aligned_cols=199  Identities=14%  Similarity=0.121  Sum_probs=105.8

Q ss_pred             eCCCEEEEEeCC----CcEEEEEccccceeeEe-e-----CCCCCcEEEEEECC-CCCEEEEEecCC-----CeEEEEEC
Q 038577          401 ANNHSLLSASLD----GTVRAWDLFRYRNFRTF-T-----TPSSRQFVSLASDQ-SGEVICAGTLDS-----FEIFVWSM  464 (860)
Q Consensus       401 ~~~~~l~s~~~d----g~i~~wd~~~~~~~~~~-~-----~~~~~~~~~~~~~~-~~~~l~~~~~~~-----~~i~v~d~  464 (860)
                      .++..++.||.+    ..+.+||..+.+-...- .     .+......+++..+ ++.+++.|+.++     ..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            455666666643    35788888766433322 1     12222223333333 777777877543     26889999


Q ss_pred             CCCceEEEecCcccCe-EEEEEcCCCCEEEEEeCCC--cEEEEEccCCcceeEE-----cccCCCeEEEEEeeC-CCEEE
Q 038577          465 KTGRLLDILSGHEGPV-HGLVFSPTNATLASSSWDK--TVRLWNVFEGKGSVES-----FPHTHDVLTVVYRPD-GRQLA  535 (860)
Q Consensus       465 ~~~~~~~~~~~h~~~v-~~l~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~s~~-~~~l~  535 (860)
                      .+.+....-....... .+.+...++++++.|+.++  .+.+||..+..-....     ........++.+..+ +++++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII  555 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence            8865433211111111 1233324788888887654  6899998776421111     111222233555555 66777


Q ss_pred             EEeC--C-----CeEEEEeCCCCce-----eEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCC-
Q 038577          536 CSTL--D-----GQIHFWDPLNGEL-----MYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSS-  602 (860)
Q Consensus       536 ~~~~--d-----g~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-  602 (860)
                      .|+.  +     ..+.+||+.+.+-     -..+......                 ...-.+++...+++.++.||.+ 
T Consensus       556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~-----------------~R~~~~~~~~~~~~iyv~GG~~~  618 (695)
T 2zwa_A          556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLF-----------------QRYGSQIKYITPRKLLIVGGTSP  618 (695)
T ss_dssp             ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGG-----------------CCBSCEEEEEETTEEEEECCBCS
T ss_pred             ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCC-----------------CcccceEEEeCCCEEEEECCccC
Confidence            7765  2     3588999887761     1111110000                 0001223333447778878743 


Q ss_pred             -------CeEEEEECCCceEE
Q 038577          603 -------KYICMYDVADQVLL  616 (860)
Q Consensus       603 -------g~v~vwd~~~~~~~  616 (860)
                             ..|.+||+.+.+..
T Consensus       619 ~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          619 SGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             SCCCCTTTSEEEEETTTTEEE
T ss_pred             CCCCCCCCeEEEEECCCCeEE
Confidence                   45889998887643

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=93.80  E-value=3.1  Score=40.18  Aligned_cols=207  Identities=16%  Similarity=0.118  Sum_probs=105.6

Q ss_pred             CCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEE
Q 038577          328 LGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLL  407 (860)
Q Consensus       328 ~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  407 (860)
                      +|.++.|-......+.........|..++..... .++. . ||.|+.|-....-.+.....-...|..++...+  ..+
T Consensus        41 ~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~--hs~  115 (282)
T 3qhy_B           41 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASY  115 (282)
T ss_dssp             TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT--EEE
T ss_pred             CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC--EEE
Confidence            3666666543321111111123357777765443 3333 4 899999976542221111112346777766543  344


Q ss_pred             EEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcC
Q 038577          408 SASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSP  487 (860)
Q Consensus       408 s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~  487 (860)
                      .-. ||.+..|-........ .+......+..++.....  .++-. ++ .++.|-......+..-..-...|..++...
T Consensus       116 al~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~~~--~~~l~-~G-~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~  189 (282)
T 3qhy_B          116 ALK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGVYT--ALAVK-NG-GVIAWGDNYFGQTTVPAEAQSGVDDVAGGI  189 (282)
T ss_dssp             EEE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSSE--EEEEE-TT-EEEEEECCTTSTTSCCGGGGSSEEEEEECS
T ss_pred             EEe-CCeEEEecCCCCCcCC-CCccCCCCeEEEEcccCE--EEEEE-CC-EEEEecCCCCCCCCCceecCCCeEEEEecC
Confidence            445 8999999865432221 111122345555544332  22223 55 888887653211111111235677777654


Q ss_pred             CCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCC
Q 038577          488 TNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNG  551 (860)
Q Consensus       488 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  551 (860)
                      +.. ++.  .||.|+.|-......+.........|..++..... .++..  ||.|+.|-.+..
T Consensus       190 ~hs-~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al~--~g~v~~wG~n~~  247 (282)
T 3qhy_B          190 FHS-LAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLALK--NGKVIAWGSSRT  247 (282)
T ss_dssp             SEE-EEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEEE--TTEEEEESTTCC
T ss_pred             CEE-EEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEEEE--CCEEEEecCCCC
Confidence            332 333  49999999865543332222333457777655433 33333  999999976654

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=93.43  E-value=2.1  Score=41.36  Aligned_cols=184  Identities=17%  Similarity=0.084  Sum_probs=95.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEee
Q 038577          351 DVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFT  430 (860)
Q Consensus       351 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~  430 (860)
                      .|..++..... .++. . ||.|+.|-....-.+.........|..++..... .++. . ||.+..|-.......-. +
T Consensus        25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~-P   97 (282)
T 3qhy_B           25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTV-P   97 (282)
T ss_dssp             SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCC-C
T ss_pred             CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCC-C
Confidence            56677665432 2333 4 8999999765422211111123356666654332 3333 4 89999998654322111 1


Q ss_pred             CCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 038577          431 TPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGK  510 (860)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~  510 (860)
                      ......+..++....  ..++-. ++ .++.|-....-.+..-......|..++...+.  .+.-. ||.|+.|-.....
T Consensus        98 ~~~~~~v~~ia~G~~--hs~al~-~G-~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~g  170 (282)
T 3qhy_B           98 AEARSGVDAIAAGAW--ASYALK-DG-KVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFG  170 (282)
T ss_dssp             GGGSSSEEEEEEETT--EEEEEE-TT-EEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTS
T ss_pred             cccCCCeEEEECcCC--EEEEEe-CC-eEEEecCCCCCcCCCCccCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCC
Confidence            111234555555433  333333 55 88888765421111111124567777664333  22234 7999999765533


Q ss_pred             ceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCC
Q 038577          511 GSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNG  551 (860)
Q Consensus       511 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  551 (860)
                      .+.........|..++...+. .++.  .||.|+.|-....
T Consensus       171 qlg~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~  208 (282)
T 3qhy_B          171 QTTVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRY  208 (282)
T ss_dssp             TTSCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTT
T ss_pred             CCCCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCC
Confidence            332222334567777665432 3333  5999999976544

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=92.78  E-value=14  Score=40.96  Aligned_cols=235  Identities=9%  Similarity=0.021  Sum_probs=124.8

Q ss_pred             EEE-EcCCCCEEEEEeC-----CCcEEEEECCCCeeEE-Eee-cCCC------ceEEEEEeeCCCEEEEE----------
Q 038577          354 CLA-YSPDSQLLATGAD-----DNKVKVWTVSSGFCFV-TFT-EHTN------AVTALHFMANNHSLLSA----------  409 (860)
Q Consensus       354 ~~~-~s~~~~~l~~~~~-----dg~i~iwd~~~~~~~~-~~~-~~~~------~v~~i~~~~~~~~l~s~----------  409 (860)
                      .+. ++|++++++.+-+     -..++++|+.+++.+. .+. .-+.      ....++|..+...+++.          
T Consensus       133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~  212 (711)
T 4hvt_A          133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSS  212 (711)
T ss_dssp             EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTT
T ss_pred             ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcC
Confidence            344 7888887766433     2369999999987663 111 0000      11344787444444432          


Q ss_pred             eCCCcEEEEEccccc--eeeEeeCCCCCcEEEEEECCCCCE----EEEE-e--cCCCeEEEEECCC--CceEEEecCccc
Q 038577          410 SLDGTVRAWDLFRYR--NFRTFTTPSSRQFVSLASDQSGEV----ICAG-T--LDSFEIFVWSMKT--GRLLDILSGHEG  478 (860)
Q Consensus       410 ~~dg~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----l~~~-~--~~~~~i~v~d~~~--~~~~~~~~~h~~  478 (860)
                      +....++.|.+-+..  ....+..+..........++++++    +++. +  .....+++.+...  ++...... ...
T Consensus       213 ~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~  291 (711)
T 4hvt_A          213 LYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINM-PSD  291 (711)
T ss_dssp             SSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCS-CTT
T ss_pred             CCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeec-CCc
Confidence            112468888876643  233344444434456667777773    3333 2  2223677777653  43232222 221


Q ss_pred             CeEEEEEcCCCCEEEEE----------eCCCcEEEEEccCCc-------ceeEEcc--cCCCeEEEEEeeCCCEEEEEeC
Q 038577          479 PVHGLVFSPTNATLASS----------SWDKTVRLWNVFEGK-------GSVESFP--HTHDVLTVVYRPDGRQLACSTL  539 (860)
Q Consensus       479 ~v~~l~~s~~~~~l~s~----------~~dg~i~iwd~~~~~-------~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~  539 (860)
                        ..+..++++.+++..          ...+.|...|+.+..       ....+..  ....+..+.+..+ .++++...
T Consensus       292 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~  368 (711)
T 4hvt_A          292 --ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYD  368 (711)
T ss_dssp             --CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEE
T ss_pred             --ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEE
Confidence              112334456555532          246779999987642       1222232  3445778888865 57777777


Q ss_pred             CCe--EEEEeCCCCc-eeEE-EecccccCCCccccccccccccCCCCcEEEEEEecCCCEE-EEecC---CCeEEEEECC
Q 038577          540 DGQ--IHFWDPLNGE-LMYT-IEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYI-LAGGS---SKYICMYDVA  611 (860)
Q Consensus       540 dg~--i~iwd~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l-~~~~~---dg~v~vwd~~  611 (860)
                      ++.  +.++++.+++ .... +....                   ...+....+++++..+ ++.+.   -+.+..+|+.
T Consensus       369 ~~~~~l~~~~~~~g~~~~~~~i~lp~-------------------~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~  429 (711)
T 4hvt_A          369 NVVAKVVTFTLENEQWTKPVVLKLPY-------------------QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT  429 (711)
T ss_dssp             TTEEEEEEECEETTEECCCEEECCCS-------------------TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             CCEEEEEEEECCCCceEEEeccCCCC-------------------CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence            775  6777776664 1222 21111                   0125666667776543 33332   3678888876

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=89.87  E-value=21  Score=37.25  Aligned_cols=106  Identities=17%  Similarity=0.156  Sum_probs=61.2

Q ss_pred             ceeEEEEEeeCCC-EEEEEEccCCcEEEEEccCce---EEEEec---------CcccCeEEEEEcCC----CCEEEEEeC
Q 038577          307 EKITTAVFNELGN-WLVFGCAKLGQLLVWEWRSES---YILKQQ---------GHYFDVNCLAYSPD----SQLLATGAD  369 (860)
Q Consensus       307 ~~i~~~~~s~~~~-~l~~~~~~~g~i~v~d~~~~~---~~~~~~---------~~~~~v~~~~~s~~----~~~l~~~~~  369 (860)
                      .....++|.|+|. .++++... |.|++++.....   .+..+.         ........|+++|+    +.+.++-+.
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~-G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKE-GYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT   92 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETT-TEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             CCceEEEECCCCCeEEEEEeCC-ceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence            4667899999996 45555444 999999754321   122221         11346788999996    444343322


Q ss_pred             --C----------CcEEEEECCC----------CeeEEEee--cCCCceEEEEEeeCCCEEEEEeCCC
Q 038577          370 --D----------NKVKVWTVSS----------GFCFVTFT--EHTNAVTALHFMANNHSLLSASLDG  413 (860)
Q Consensus       370 --d----------g~i~iwd~~~----------~~~~~~~~--~~~~~v~~i~~~~~~~~l~s~~~dg  413 (860)
                        +          ..|.-|.+..          .+.+..+.  .....-..|+|.|||.+.++.+..+
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence              1          1344465532          12333332  1223467899999998877776543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=88.85  E-value=25  Score=36.70  Aligned_cols=105  Identities=15%  Similarity=0.046  Sum_probs=60.3

Q ss_pred             cCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCe---eEEEee---------cCCCceEEEEEeeC----CCEEEEEeC-
Q 038577          350 FDVNCLAYSPDSQ-LLATGADDNKVKVWTVSSGF---CFVTFT---------EHTNAVTALHFMAN----NHSLLSASL-  411 (860)
Q Consensus       350 ~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~---~~~~~~---------~~~~~v~~i~~~~~----~~~l~s~~~-  411 (860)
                      ...+.|+|.|+|. .++++...|.|++++.....   .+..+.         ........|+++|+    +...++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            3467899999996 45566778999999754221   122221         01356789999986    433343332 


Q ss_pred             -C----------CcEEEEEcccc----------ceeeEee-CCCCCcEEEEEECCCCCEEEEEec
Q 038577          412 -D----------GTVRAWDLFRY----------RNFRTFT-TPSSRQFVSLASDQSGEVICAGTL  454 (860)
Q Consensus       412 -d----------g~i~~wd~~~~----------~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~  454 (860)
                       +          ..|.-|.+...          +.+..+. .........++|.|||.+.++.+.
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence             1          13444555321          1222222 223345678999999986666544

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=88.37  E-value=18  Score=34.56  Aligned_cols=184  Identities=15%  Similarity=0.088  Sum_probs=106.0

Q ss_pred             CCEEEEEeCCCcEEEEE---CCCCeeEEEeecCCCceEEEEEee--CCCEEEEEeCCCcEEEEEccccc----eeeEeeC
Q 038577          361 SQLLATGADDNKVKVWT---VSSGFCFVTFTEHTNAVTALHFMA--NNHSLLSASLDGTVRAWDLFRYR----NFRTFTT  431 (860)
Q Consensus       361 ~~~l~~~~~dg~i~iwd---~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~dg~i~~wd~~~~~----~~~~~~~  431 (860)
                      ...++.-+..|.++--.   +..+.....+ .....|..+.. +  +...++..+.+|.++...+....    ....+..
T Consensus        35 ~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll-~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~l  112 (276)
T 3no0_A           35 TEGLFLVSNRGRVYWIAGSQALQGSKVSLK-SREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKL  112 (276)
T ss_dssp             TSCEEEEETTSEEEEECSHHHHTSEECCCS-STTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCC
T ss_pred             CCEEEEEcCCCeEEEEEhhhCccCcccccC-CCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEec
Confidence            33455555566655432   2222111013 23456666644 4  46789999999999999876643    2223333


Q ss_pred             CCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCC---------ceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 038577          432 PSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTG---------RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVR  502 (860)
Q Consensus       432 ~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~---------~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~  502 (860)
                      .....+..+........++..+..| .++.++...-         ...-.+. ....|.++...+++..++..+..|.++
T Consensus       113 kegD~l~~~~~~~~~~~ill~T~~G-~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ll~~T~~G~~k  190 (276)
T 3no0_A          113 TEGDEVVSIASSVDETHILLFTKKG-RVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPYLLVITAKGRVK  190 (276)
T ss_dssp             CTTCCEEEEEECCSSCEEEEEETTS-EEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSEEEEEETTSCEE
T ss_pred             CCCCEEEEEEEeCCCCEEEEEECCC-EEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCEEEEEeCCCcEE
Confidence            3445666666666667788888887 7777765321         1111122 235566666666677889999999999


Q ss_pred             EEEccCCc-------ceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEE--EeCC
Q 038577          503 LWNVFEGK-------GSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHF--WDPL  549 (860)
Q Consensus       503 iwd~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i--wd~~  549 (860)
                      ...+..-.       ..... ...+.+..+....+...++..+.+|.+..  ++..
T Consensus       191 r~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~  245 (276)
T 3no0_A          191 KISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK  245 (276)
T ss_dssp             EEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred             EeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence            98874322       11222 33444555444334445666677777666  6653

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=88.32  E-value=22  Score=35.61  Aligned_cols=136  Identities=13%  Similarity=0.217  Sum_probs=87.6

Q ss_pred             cEEEEEcccc--ceeeEeeCCC-----CCcEEEEEEC---CC----CCEEEEEecCCCeEEEEECCCCceEEEecC----
Q 038577          414 TVRAWDLFRY--RNFRTFTTPS-----SRQFVSLASD---QS----GEVICAGTLDSFEIFVWSMKTGRLLDILSG----  475 (860)
Q Consensus       414 ~i~~wd~~~~--~~~~~~~~~~-----~~~~~~~~~~---~~----~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~----  475 (860)
                      +|.+||+.+.  +.++.+..+.     ...+..++++   |.    +.++.++...+..|.+||+.+++.-+.+..    
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            5777888888  7777776542     3457777777   22    456667766566899999999876655521    


Q ss_pred             ----------c----ccCeEEEEEcCC----CCEEEEEeCCCcEEEEEccC-----Cc--ceeEEcccC---CCeEEEEE
Q 038577          476 ----------H----EGPVHGLVFSPT----NATLASSSWDKTVRLWNVFE-----GK--GSVESFPHT---HDVLTVVY  527 (860)
Q Consensus       476 ----------h----~~~v~~l~~s~~----~~~l~s~~~dg~i~iwd~~~-----~~--~~~~~~~~~---~~v~~~~~  527 (860)
                                .    ...+..|+++|+    ++.|......+ -++|.+.+     ..  ...+..+..   ..-..+++
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~  282 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY  282 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence                      0    136888999998    77777666554 24444432     11  112222222   34455677


Q ss_pred             e-eCCCEEEEEeCCCeEEEEeCCC
Q 038577          528 R-PDGRQLACSTLDGQIHFWDPLN  550 (860)
Q Consensus       528 s-~~~~~l~~~~~dg~i~iwd~~~  550 (860)
                      . .+|.++++--....|..|+..+
T Consensus       283 D~~~G~ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          283 DPKTKVIFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             CTTTCEEEEEESSSSEEEEEETTS
T ss_pred             eCCCCeEEEEeccCCeEEEEeCCC
Confidence            5 5777777777788899999875

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=87.00  E-value=42  Score=37.28  Aligned_cols=235  Identities=9%  Similarity=0.054  Sum_probs=123.7

Q ss_pred             EEE-EeeCCCEEEEEEccCC----cEEEEEccCceEEEEecCccc--------CeEEEEEcCCCCEEEEEe---------
Q 038577          311 TAV-FNELGNWLVFGCAKLG----QLLVWEWRSESYILKQQGHYF--------DVNCLAYSPDSQLLATGA---------  368 (860)
Q Consensus       311 ~~~-~s~~~~~l~~~~~~~g----~i~v~d~~~~~~~~~~~~~~~--------~v~~~~~s~~~~~l~~~~---------  368 (860)
                      .+. ++|+++.++++-+..|    .++++|+.+++.+..--....        ....++|..+...+++..         
T Consensus       133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~  212 (711)
T 4hvt_A          133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSS  212 (711)
T ss_dssp             EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTT
T ss_pred             ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcC
Confidence            344 7889998888776544    699999999887631100000        013447764443333211         


Q ss_pred             -CCCcEEEEECCCCe--eEEEeecCCCce-EEEEEeeCCCE-----EEEEeCC---CcEEEEEcccc-ceeeEeeCCCCC
Q 038577          369 -DDNKVKVWTVSSGF--CFVTFTEHTNAV-TALHFMANNHS-----LLSASLD---GTVRAWDLFRY-RNFRTFTTPSSR  435 (860)
Q Consensus       369 -~dg~i~iwd~~~~~--~~~~~~~~~~~v-~~i~~~~~~~~-----l~s~~~d---g~i~~wd~~~~-~~~~~~~~~~~~  435 (860)
                       ....|+.|.+.+..  -...+.+....+ .+...++++++     +++.+.+   ..+.+.+.... .....+..+...
T Consensus       213 ~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  292 (711)
T 4hvt_A          213 LYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDA  292 (711)
T ss_dssp             SSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTC
T ss_pred             CCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcc
Confidence             12468888876542  223333333332 33445566652     4444423   23455554431 123344444432


Q ss_pred             cEEEEEECCCCCEEEEEec---------CCCeEEEEECCCCc-------eEEE-ec-CcccCeEEEEEcCCCCEEEEEeC
Q 038577          436 QFVSLASDQSGEVICAGTL---------DSFEIFVWSMKTGR-------LLDI-LS-GHEGPVHGLVFSPTNATLASSSW  497 (860)
Q Consensus       436 ~~~~~~~~~~~~~l~~~~~---------~~~~i~v~d~~~~~-------~~~~-~~-~h~~~v~~l~~s~~~~~l~s~~~  497 (860)
                      .   +....++.+++....         ..+.|...|+.++.       .... +. .....+..+.+..+ .++++...
T Consensus       293 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~  368 (711)
T 4hvt_A          293 T---LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYD  368 (711)
T ss_dssp             E---EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEE
T ss_pred             e---EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEE
Confidence            2   223345555543311         23479999987642       2222 32 23446778888865 57777777


Q ss_pred             CCc--EEEEEccCCc-ceeE-E-cccCCCeEEEEEeeCCCEE-EEEeC---CCeEEEEeCC
Q 038577          498 DKT--VRLWNVFEGK-GSVE-S-FPHTHDVLTVVYRPDGRQL-ACSTL---DGQIHFWDPL  549 (860)
Q Consensus       498 dg~--i~iwd~~~~~-~~~~-~-~~~~~~v~~~~~s~~~~~l-~~~~~---dg~i~iwd~~  549 (860)
                      ++.  +.++|+.++. .... + .+..+.+.....++++..+ ++.+.   -+.+..+|+.
T Consensus       369 ~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~  429 (711)
T 4hvt_A          369 NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT  429 (711)
T ss_dssp             TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence            764  6677766653 1222 1 2223456666777776544 44332   3568888886

>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G

Probab=86.66  E-value=2.2  Score=35.58  Aligned_cols=81  Identities=19%  Similarity=0.208  Sum_probs=62.0

Q ss_pred             HHHHHhhcCcCCcHHHHHHHHhc-----CC-------hHHHHHHhHhcCCCccchhcccCCHHHHHHHHHHHHhhhccCC
Q 038577          727 PEAVDAALNEDQPKRALILSLRL-----NE-------DNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLLESCP  794 (860)
Q Consensus       727 ~~~~~~~~~~~~~~~~l~~~~~~-----~~-------~~~~~~~l~~~~~~~i~~~~~~l~~~~~~~ll~~l~~~l~~~~  794 (860)
                      ..+++..+..+....+|..+|..     ++       ...++++|.+++.++|+.++..|+.++...|++||=+-++...
T Consensus        39 ~~qv~~lL~~g~~~~ALk~~L~~pP~~~k~q~~K~~~~~~Vl~VL~siK~sdI~~~v~~L~~e~~D~LMKYiYkGm~~~~  118 (151)
T 1k8k_G           39 EGEVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPS  118 (151)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTSSCCSSCSCHHHHHHHHHHHHHHHHHSCGGGHHHHHHTSCHHHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHHhChhhhhHHHHHHHHhhcCcC
Confidence            55666677777888888877754     22       2458899999999999999999999999999999999998765


Q ss_pred             ChhhHHHHHHHHHHHHhh
Q 038577          795 HLEFMLRWCQELCKTHGN  812 (860)
Q Consensus       795 ~~~~~~~~l~~~l~~H~~  812 (860)
                      +-.     ...||..|--
T Consensus       119 ~~~-----~~~LL~WHEK  131 (151)
T 1k8k_G          119 DNS-----SAVLLQWHEK  131 (151)
T ss_dssp             TTH-----HHHHHHHHHH
T ss_pred             CCc-----chHHHHHHHH
Confidence            443     2345555533

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=86.45  E-value=30  Score=35.13  Aligned_cols=261  Identities=9%  Similarity=0.015  Sum_probs=121.8

Q ss_pred             CEEEEEEcCCeEEEEECCC-ceeEEEE--eecCceeEEEEEee-CCCEEEEEEccCC----cEEEEEccCceEEEEec--
Q 038577          277 DMVVVGFSNGVFGLYQMPD-FVCIHLL--SISREKITTAVFNE-LGNWLVFGCAKLG----QLLVWEWRSESYILKQQ--  346 (860)
Q Consensus       277 ~~l~~~~~~g~i~~~~~~~-~~~~~~~--~~~~~~i~~~~~s~-~~~~l~~~~~~~g----~i~v~d~~~~~~~~~~~--  346 (860)
                      ..|.+|+..| +.+++... +..-...  ......+.++++.| +...+.+++.. |    .|...+ ..+..-..+.  
T Consensus        23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~-g~~g~gl~~s~-D~G~tW~~~~~~   99 (394)
T 3b7f_A           23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAART-GHLGPTVFRSD-DGGGNWTEATRP   99 (394)
T ss_dssp             CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC---CCEEEEEES-STTSCCEECSBC
T ss_pred             CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecC-CCCCccEEEeC-CCCCCceECCcc
Confidence            4677888777 44554322 2222211  23445799999998 33344444433 3    343332 2222111111  


Q ss_pred             ----C--------cccCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeeEEEeec-------------------CCCc
Q 038577          347 ----G--------HYFDVNCLAYSPD--SQLLATGADDNKVKVWTVSSGFCFVTFTE-------------------HTNA  393 (860)
Q Consensus       347 ----~--------~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------------~~~~  393 (860)
                          .        ....|.++++.|.  ...+.++...+.|...+ ..++.-..+..                   ....
T Consensus       100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~  178 (394)
T 3b7f_A          100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPK  178 (394)
T ss_dssp             CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCE
T ss_pred             ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCc
Confidence                0        1124778888862  44555555556555443 22332222211                   1235


Q ss_pred             eEEEEEeeC-CCEEEEEeCCCcEEEEEccccceeeEeeCCC------------CCcEEEEEECCC-CCEEEEEecCCCeE
Q 038577          394 VTALHFMAN-NHSLLSASLDGTVRAWDLFRYRNFRTFTTPS------------SRQFVSLASDQS-GEVICAGTLDSFEI  459 (860)
Q Consensus       394 v~~i~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~------------~~~~~~~~~~~~-~~~l~~~~~~~~~i  459 (860)
                      +.+|.+.|. ...++.+..++.+...+ ..++....+....            ...+.++.++|. ...+.++...  .|
T Consensus       179 i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~--gl  255 (394)
T 3b7f_A          179 MHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHC--GI  255 (394)
T ss_dssp             EEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETT--EE
T ss_pred             eeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCC--eE
Confidence            788999873 34555554444443322 2233332222110            124788899886 3566666544  45


Q ss_pred             EEEECCCCceEEEecC--cc---cCeEEEEEcCC-CCEEEEEeC-----------CCcEEEEEccCCcceeEEc----cc
Q 038577          460 FVWSMKTGRLLDILSG--HE---GPVHGLVFSPT-NATLASSSW-----------DKTVRLWNVFEGKGSVESF----PH  518 (860)
Q Consensus       460 ~v~d~~~~~~~~~~~~--h~---~~v~~l~~s~~-~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~----~~  518 (860)
                      +..+- .++.-..+..  ..   ..+.+++++|. ...+..+..           ++...+|...++-......    +.
T Consensus       256 ~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~  334 (394)
T 3b7f_A          256 YRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPT  334 (394)
T ss_dssp             EEEET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCC
T ss_pred             EEeCC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCC
Confidence            55542 2333333221  11   23567888763 333444331           3334566554432122211    11


Q ss_pred             CC-----CeEEEEEeeC-CCEEEEEeCCCeEEE
Q 038577          519 TH-----DVLTVVYRPD-GRQLACSTLDGQIHF  545 (860)
Q Consensus       519 ~~-----~v~~~~~s~~-~~~l~~~~~dg~i~i  545 (860)
                      ..     ....++++|. ...|+.++.++.|..
T Consensus       335 ~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~  367 (394)
T 3b7f_A          335 DQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWA  367 (394)
T ss_dssp             SSCCCCCCTBSEEECCSSSCCEEEECTTSCEEE
T ss_pred             ccccceEEEEEEEECCCCCCEEEEEeCCCeEEE
Confidence            11     1135778874 345666665655443

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=85.38  E-value=29  Score=33.87  Aligned_cols=188  Identities=11%  Similarity=0.127  Sum_probs=111.1

Q ss_pred             CCCCEEEEEEcCCeEEEEECCCceeE-------EEEee-cCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEE---
Q 038577          274 RGLDMVVVGFSNGVFGLYQMPDFVCI-------HLLSI-SREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYI---  342 (860)
Q Consensus       274 ~~~~~l~~~~~~g~i~~~~~~~~~~~-------~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~---  342 (860)
                      |+...+++.+.+|.|+-..+...+..       ..+.. ..+.+..+........+++.+.. |.++-.....-...   
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~-G~~~~~~~~~ip~~~r~   84 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNE-GKLYLINAYEIKDSSRA   84 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETT-SEEEEEEGGGSCC----
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECC-CeEEEEEHHHCCCCCcc
Confidence            45667888999999988876543221       11111 22345555555566666666665 87776654321110   


Q ss_pred             E---------EecCcccCeEEEEEcC---CCCEEEEEeCCCcEEEEECCC-------CeeEEEeecCCCceEEEEEeeCC
Q 038577          343 L---------KQQGHYFDVNCLAYSP---DSQLLATGADDNKVKVWTVSS-------GFCFVTFTEHTNAVTALHFMANN  403 (860)
Q Consensus       343 ~---------~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~i~~~~~~  403 (860)
                      .         .+. ....|.++...+   +...++..+..|.++...+..       |.....+.. .+.+..+....+.
T Consensus        85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~  162 (312)
T 1suu_A           85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD  162 (312)
T ss_dssp             ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred             CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence            0         011 123344443332   456788889999999887742       222223333 4566666666556


Q ss_pred             CEEEEEeCCCcEEEEEcccc-------ceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECC
Q 038577          404 HSLLSASLDGTVRAWDLFRY-------RNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK  465 (860)
Q Consensus       404 ~~l~s~~~dg~i~~wd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~  465 (860)
                      ..++..+.+|.+..+....-       +-.+.+.......+..+..-.++..+++.+..+ .....++.
T Consensus       163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G-~~kr~~~~  230 (312)
T 1suu_A          163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENG-YGKRLNMS  230 (312)
T ss_dssp             CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTS-EEEEEEGG
T ss_pred             CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCC-ceEEEEHH
Confidence            68889999999998887542       233344444455666766655666777777777 77777765

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=85.14  E-value=29  Score=33.73  Aligned_cols=231  Identities=12%  Similarity=0.084  Sum_probs=125.8

Q ss_pred             CCCCEEEEEEcCCeEEEEECCCceeEEE-------Eee-cCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc---C----
Q 038577          274 RGLDMVVVGFSNGVFGLYQMPDFVCIHL-------LSI-SREKITTAVFNELGNWLVFGCAKLGQLLVWEWR---S----  338 (860)
Q Consensus       274 ~~~~~l~~~~~~g~i~~~~~~~~~~~~~-------~~~-~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~---~----  338 (860)
                      |+.+.+++.+.+|.|+--.+.+.+....       +.. ..+.+..+........+++.+.. |.++-+...   .    
T Consensus         1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~-G~~~~~~~~elp~~~~~   79 (307)
T 1zi0_A            1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR-GRVYSMKVYQLPEATRG   79 (307)
T ss_dssp             CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETT-SEEEEEEGGGSCCCCSS
T ss_pred             CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECC-CEEEEEEhhHCcCCCCC
Confidence            3456788889999998877765433221       111 22344455555566666666665 776655432   2    


Q ss_pred             --ceEEE---EecCcccCeEEEEEc---CCCCEEEEEeCCCcEEEEECCC-------CeeEEEeecCCCceEEEEEeeCC
Q 038577          339 --ESYIL---KQQGHYFDVNCLAYS---PDSQLLATGADDNKVKVWTVSS-------GFCFVTFTEHTNAVTALHFMANN  403 (860)
Q Consensus       339 --~~~~~---~~~~~~~~v~~~~~s---~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~i~~~~~~  403 (860)
                        |..+.   .+ .....|.++...   .++.+++..+..|.++...+..       +.....+..+ +.+..+....+.
T Consensus        80 a~G~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~  157 (307)
T 1zi0_A           80 ARGRPIVNLLPL-EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGE  157 (307)
T ss_dssp             SCCEEGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTT
T ss_pred             CCCeEhhhccCC-CCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCC
Confidence              11111   11 123345555432   3566788999999999987642       2122223333 566666665556


Q ss_pred             CEEEEEeCCCcEEEEEccccc-------eeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCc-------e
Q 038577          404 HSLLSASLDGTVRAWDLFRYR-------NFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGR-------L  469 (860)
Q Consensus       404 ~~l~s~~~dg~i~~wd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~-------~  469 (860)
                      ..++..+.+|.+..++...-.       -.+.+.......+.++...+++..+++.+..| ..+-.++..-.       -
T Consensus       158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G-~~Kr~~~~e~~~~~Rg~kG  236 (307)
T 1zi0_A          158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG-YGKRTAVAEYPTKSRATKG  236 (307)
T ss_dssp             CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTS-EEEEECGGGSCCCCTTSCC
T ss_pred             CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCC-ceEEEEHHHhccCCCCCCC
Confidence            678888899998888874321       22233344455677766555566777777777 67777663211       1


Q ss_pred             EEE--ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 038577          470 LDI--LSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFE  508 (860)
Q Consensus       470 ~~~--~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~  508 (860)
                      +..  +....+.+..+....+...++..+.+|.+.-+++..
T Consensus       237 ~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~  277 (307)
T 1zi0_A          237 VISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE  277 (307)
T ss_dssp             EESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred             EEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence            111  222224554444433445555666677666666544

>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=85.05  E-value=1.7  Score=36.27  Aligned_cols=67  Identities=15%  Similarity=0.124  Sum_probs=54.8

Q ss_pred             HHHHHhhcCcCCcHHHHHHHHhcC------------ChHHHHHHhHhcCCCccchhcccCCHHHHHHHHHHHHhhhccC
Q 038577          727 PEAVDAALNEDQPKRALILSLRLN------------EDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLLESC  793 (860)
Q Consensus       727 ~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~~~~l~~~~~~~i~~~~~~l~~~~~~~ll~~l~~~l~~~  793 (860)
                      ..+++..+..+.+..+|..+|..-            ....++++|.+++.++|+.++..|..+....|++||=+-++..
T Consensus        40 ~~qvr~lL~~g~~~~ALk~aL~~pP~~~~~~~~K~~~~~~Vl~vL~siK~sdI~~~v~~L~~~~~D~LMKYiYkGm~~~  118 (152)
T 3dwl_G           40 IPQARSAIQTGNALQGLKTLLSYVPYGNDVQEVRTQYLNAFVDVLSNIRAADIPAFVKECSTEEIDNIVNFIYRGLANP  118 (152)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHTSSCCCSCSCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHSCHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHccHHHHHHHHHHhCHHHHHHHHHHHHHhccCc
Confidence            355666777788888888887641            1246889999999999999999999999999999999999764

>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}

Probab=84.13  E-value=7.5  Score=32.22  Aligned_cols=80  Identities=16%  Similarity=0.190  Sum_probs=63.9

Q ss_pred             HHHHhhcCcCCcHHHHHHHHhcCChHHHHHHhHhcCCCcc-chhcccCCHHHHHHHHHHHHhhhccCCChhhHHHHHHHH
Q 038577          728 EAVDAALNEDQPKRALILSLRLNEDNLIKKCIFAISPVDI-PAVASSIPYRYMQRLIEALSDLLESCPHLEFMLRWCQEL  806 (860)
Q Consensus       728 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~i-~~~~~~l~~~~~~~ll~~l~~~l~~~~~~~~~~~~l~~~  806 (860)
                      +++...+.++.|-.++..+|..++.+.+..+...++|+.| ...=..|+..-+..+++-|+.-|  ..+.+.=..|+...
T Consensus         5 ~~I~~Ll~~g~~eeAf~~aL~ssd~~lv~~lc~~~dp~~~~~~~~~~Lsq~vLLSLiqqls~dL--~~~~~~Kl~WLe~v   82 (139)
T 2vxg_A            5 DSIKQLLMAGQINKAFHQALLANDLGLVEFTLRHTDSNQAFAPEGCRLEQKVLLSLIQQISADM--TNHNELKQRYLNEA   82 (139)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHSCHHHHTC----CCCHHHHHHHHHHHHHCC--TTCCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHhCcHHHHHHHHHcCCHHHhcCCCCCCccHHHHHHHHHHHHHHh--ccCcHHHHHHHHHH
Confidence            3466677889999999999999999999999999999875 22225678888889999999888  55667778999988


Q ss_pred             HHH
Q 038577          807 CKT  809 (860)
Q Consensus       807 l~~  809 (860)
                      +..
T Consensus        83 l~a   85 (139)
T 2vxg_A           83 LLA   85 (139)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=82.83  E-value=43  Score=33.91  Aligned_cols=236  Identities=13%  Similarity=0.116  Sum_probs=115.3

Q ss_pred             CCEEEEEeCCCcEEEEECCCC--------e---eEEEeec-CCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccc----
Q 038577          361 SQLLATGADDNKVKVWTVSSG--------F---CFVTFTE-HTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYR----  424 (860)
Q Consensus       361 ~~~l~~~~~dg~i~iwd~~~~--------~---~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~----  424 (860)
                      ....+.-..||.|+.|-....        .   ....+.. ....+..++++....+.+....||.|..|-....-    
T Consensus        62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~  141 (389)
T 3kci_A           62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH  141 (389)
T ss_dssp             TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred             CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence            345555567788888854321        1   1111211 22345556666666677777889999999654311    


Q ss_pred             -------eeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCC-Cc----------eEEEecC-cccCeEEEEE
Q 038577          425 -------NFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT-GR----------LLDILSG-HEGPVHGLVF  485 (860)
Q Consensus       425 -------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~-~~----------~~~~~~~-h~~~v~~l~~  485 (860)
                             ....+.......+..++..  ....++-..++ .|+.|-... ++          ....+.. ....|..++.
T Consensus       142 g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G-~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~  218 (389)
T 3kci_A          142 GNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAG-DLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIAC  218 (389)
T ss_dssp             SSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTS-CEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE
T ss_pred             CCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCC-eEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEE
Confidence                   1111111122234444433  33444445555 788886432 11          0111111 2235667766


Q ss_pred             cCCCCEEEEEeCCCcEEEEEccCCcc----------eeEEcc--cCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCce
Q 038577          486 SPTNATLASSSWDKTVRLWNVFEGKG----------SVESFP--HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGEL  553 (860)
Q Consensus       486 s~~~~~l~s~~~dg~i~iwd~~~~~~----------~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  553 (860)
                      .......+....||.|+.|-....-.          ......  ....|..++..  ..+.+.-..+|.|+.|-....-.
T Consensus       219 G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~Gq  296 (389)
T 3kci_A          219 GSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHR  296 (389)
T ss_dssp             CCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGT
T ss_pred             cCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCC
Confidence            54345666677899999996532111          111111  12245555543  34555557899999997643221


Q ss_pred             eEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECC
Q 038577          554 MYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVA  611 (860)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~  611 (860)
                      +..-....      ...  ........+..|..++.  .....++...||.|+.|=..
T Consensus       297 LG~g~~~~------~~~--P~~v~~l~~~~v~~ia~--G~~h~~al~~~G~v~~wG~n  344 (389)
T 3kci_A          297 LGHGSDDH------VRR--PRQVQGLQGKKVIAIAT--GSLHCVCCTEDGEVYTWGDN  344 (389)
T ss_dssp             TCSSSCCC------EEE--EEECGGGTTCCEEEEEE--CSSEEEEEETTCCEEEEECC
T ss_pred             CCCCCCcc------ccC--CeEeccCCCCCEEEEEe--ccCeEEEECCCCCEEEeeCC
Confidence            11000000      000  00000111223555544  44455666788889988654

>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1

Probab=81.20  E-value=43  Score=32.78  Aligned_cols=231  Identities=12%  Similarity=0.087  Sum_probs=126.0

Q ss_pred             CCCCEEEEEEcCCeEEEEECCCcee----EEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc---C------ce
Q 038577          274 RGLDMVVVGFSNGVFGLYQMPDFVC----IHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR---S------ES  340 (860)
Q Consensus       274 ~~~~~l~~~~~~g~i~~~~~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~---~------~~  340 (860)
                      |+.+.+++.+.+|.|+--.+...+.    ...+. ..+.+..+........+++.+.. |.++-+...   .      |.
T Consensus         3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~-Gr~~~~~~~elp~~~r~a~G~   80 (323)
T 1wp5_A            3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTNK-GNYLYCPVHELPDIRWKDLGQ   80 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEETT-SEEEEEEGGGSCBCCTTSCCE
T ss_pred             cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEECCCCEEEEEECC-CEEEEEEHHHCcCCCCCCCCc
Confidence            5566788889999888776542211    01111 22345555555566667666665 776655432   1      22


Q ss_pred             EEEEe-c-CcccCeEEEE-EcC--CCCEEEEEeCCCcEEEEECCC--------CeeEEEeecCCCceEEEEEeeCCCEEE
Q 038577          341 YILKQ-Q-GHYFDVNCLA-YSP--DSQLLATGADDNKVKVWTVSS--------GFCFVTFTEHTNAVTALHFMANNHSLL  407 (860)
Q Consensus       341 ~~~~~-~-~~~~~v~~~~-~s~--~~~~l~~~~~dg~i~iwd~~~--------~~~~~~~~~~~~~v~~i~~~~~~~~l~  407 (860)
                      .+... . .....|.++. ..+  ++.+++.++.+|.++...+..        |.....+.. .+.+..+........++
T Consensus        81 ~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~  159 (323)
T 1wp5_A           81 HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELF  159 (323)
T ss_dssp             EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEE
T ss_pred             ChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEE
Confidence            11111 0 1123455543 332  256789999999999988742        222222332 35666666655666788


Q ss_pred             EEeCCCcEEEEEcccc-------ceeeEeeCCCCCcEEEEEECCCCC-EEEEEecCCCeEEEEECCC-------CceEEE
Q 038577          408 SASLDGTVRAWDLFRY-------RNFRTFTTPSSRQFVSLASDQSGE-VICAGTLDSFEIFVWSMKT-------GRLLDI  472 (860)
Q Consensus       408 s~~~dg~i~~wd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~i~v~d~~~-------~~~~~~  472 (860)
                      ..+.+|.+..+....-       +-.+.+.......+.++..-+++. .+++.+..| ..+..++..       ++-+..
T Consensus       160 l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G-~gKr~~~~e~~~~~Rg~kGv~~  238 (323)
T 1wp5_A          160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRG-AVKKMKLTEFEKATRAKRGVVI  238 (323)
T ss_dssp             EEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTS-EEEEEEGGGSCCCCTTSCCEEC
T ss_pred             EEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCC-ceEEEEHHHccccCCCCCCEEC
Confidence            8999999888887432       223333344445566665444444 677777777 666666643       122222


Q ss_pred             ec---CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 038577          473 LS---GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFE  508 (860)
Q Consensus       473 ~~---~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~  508 (860)
                      ++   .....+..+....++..++..+..|.+....+..
T Consensus       239 ~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~  277 (323)
T 1wp5_A          239 LRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD  277 (323)
T ss_dssp             SCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred             eeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence            21   1222454333333344566666777766666544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	860
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-34
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-28
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-25
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-30
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-29
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-29
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-24
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-24
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-22
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-23
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-18
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-17
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-15
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-20
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-19
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-20
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-17
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.004
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-19
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	8e-14
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	9e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-18
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-17
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-16
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-15
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-18
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-17
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-12
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-16
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-14
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	7e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-16
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-10
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-15
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-14
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-10
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-15
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-13
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-14
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-12
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-14
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-14
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-13
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-12
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-08
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-14
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-09
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-09
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.001
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.004
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-12
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-11
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-10
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-09
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-12
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-11
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-08
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-11
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-09
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-11
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	5e-11
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-07
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	5e-06
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-09
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	7e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	6e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-05
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	1e-06
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	2e-05
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	2e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	6e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	5e-05
d2bgra1	470	b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,	9e-05
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	7e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  131 bits (329), Expect = 3e-34
 Identities = 58/302 (19%), Positives = 115/302 (38%), Gaps = 21/302 (6%)

Query: 265 SKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFG 324
           S VT   +H    ++V    +    ++          L    + +   +  +    L+  
Sbjct: 18  SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ-DISFDHSGKLLAS 76

Query: 325 CAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCF 384
           C+    + +W+++    I    GH  +V+ ++  P+   + + + D  +K+W V +G+C 
Sbjct: 77  CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV 136

Query: 385 VTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQF------- 437
            TFT H   V  +    +   + S S D TVR W +                        
Sbjct: 137 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 196

Query: 438 ------------VSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVF 485
                        +  S + G  + +G+ D   I +W + TG  L  L GH+  V G++F
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDK-TIKMWDVSTGMCLMTLVGHDNWVRGVLF 255

Query: 486 SPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHF 545
                 + S + DKT+R+W+    +       H H V ++ +      +   ++D  +  
Sbjct: 256 HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 315

Query: 546 WD 547
           W+
Sbjct: 316 WE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  114 bits (284), Expect = 3e-28
 Identities = 55/275 (20%), Positives = 104/275 (37%), Gaps = 2/275 (0%)

Query: 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHS 405
            GH   V  + + P   ++ + ++D  +KVW   +G    T   HT++V  + F  +   
Sbjct: 14  SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73

Query: 406 LLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK 465
           L S S D T++ WD   +   RT                   ++ A       I +W ++
Sbjct: 74  LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS--RDKTIKMWEVQ 131

Query: 466 TGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTV 525
           TG  +   +GH   V  +  +     +AS S D+TVR+W V   +   E   H H V  +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191

Query: 526 VYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFT 585
            + P+    + S   G         G  + +    + I    + T               
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 251

Query: 586 TLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQ 620
            + + + G +IL+    K + ++D  ++  ++   
Sbjct: 252 GVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN 286

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  106 bits (264), Expect = 1e-25
 Identities = 42/314 (13%), Positives = 98/314 (31%), Gaps = 34/314 (10%)

Query: 134 IRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVV 193
              L+     VT + + P  + ++  S+D  ++++  +        +    L GH DSV 
Sbjct: 10  KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG------DFERTLKGHTDSVQ 63

Query: 194 GCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGT--------- 244
              F    K           +      +         D  +        G          
Sbjct: 64  DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 123

Query: 245 PERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSI 304
             +  +         F+     V     ++   ++    ++    ++ +    C   L  
Sbjct: 124 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 183

Query: 305 SREKITTAVFNELGNWLVFG-------------------CAKLGQLLVWEWRSESYILKQ 345
            R  +    +    ++                        ++   + +W+  +   ++  
Sbjct: 184 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 243

Query: 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHS 405
            GH   V  + +    + + + ADD  ++VW   +  C  T   H + VT+L F      
Sbjct: 244 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY 303

Query: 406 LLSASLDGTVRAWD 419
           +++ S+D TV+ W+
Sbjct: 304 VVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.7 bits (130), Expect = 2e-08
 Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 9/122 (7%)

Query: 49  VESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-FKYPVNAILFSPNGKY 107
           +  ++          G FLL+   ++     ++   + L  +      V  +LF   GK+
Sbjct: 202 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF 261

Query: 108 IAVGTG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVR 166
           I      K +++W     +        ++TL      VT+L++   + Y++ GS D  V+
Sbjct: 262 ILSCADDKTLRVWDYKNKR-------CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK 314

Query: 167 LF 168
           ++
Sbjct: 315 VW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.6 bits (114), Expect = 2e-06
 Identities = 26/185 (14%), Positives = 60/185 (32%), Gaps = 26/185 (14%)

Query: 52  SSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-FKYPVNAILFSPNGKYIAV 110
              +  +  + DGT + +   +Q      +        +R  ++ V  I ++P   Y ++
Sbjct: 143 REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSI 202

Query: 111 GTGKLVQIWRSPGFKKEVFA--------------FELIRTLADCNDKVTALNWSPDSNYL 156
                 +  +S      + +                 + TL   ++ V  + +     ++
Sbjct: 203 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFI 262

Query: 157 LVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDC 216
           L  + D  +R++  K K + + T     L  H   V    F           + T + D 
Sbjct: 263 LSCADDKTLRVWDYKNK-RCMKT-----LNAHEHFVTSLDFHKTAP-----YVVTGSVDQ 311

Query: 217 YMFSW 221
            +  W
Sbjct: 312 TVKVW 316

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  119 bits (298), Expect = 7e-30
 Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 2/173 (1%)

Query: 334 WEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNA 393
           W+  +        GH  DV  L+ +PD++L  +GA D   K+W V  G C  TFT H + 
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228

Query: 394 VTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFV-SLASDQSGEVICAG 452
           + A+ F  N ++  + S D T R +DL   +   T++  +    + S++  +SG ++ AG
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288

Query: 453 TLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN 505
             D     VW         +L+GH+  V  L  +     +A+ SWD  +++WN
Sbjct: 289 YDDF-NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  117 bits (293), Expect = 3e-29
 Identities = 43/309 (13%), Positives = 91/309 (29%), Gaps = 65/309 (21%)

Query: 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHS 405
           +GH   +  + +  DS+LL + + D K+ +W   +          ++ V    +  + + 
Sbjct: 52  RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 111

Query: 406 LLSASLDGTVRAWDL-------------------------------------------FR 422
           +    LD     ++L                                             
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 171

Query: 423 YRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHG 482
               +T T       V   S      +           +W ++ G      +GHE  ++ 
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA 231

Query: 483 LVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHD--VLTVVYRPDGRQLACSTLD 540
           + F P     A+ S D T RL+++   +  +          + +V +   GR L     D
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291

Query: 541 GQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGG 600
              + WD L  +    + G  +                      + L  + DG  +  G 
Sbjct: 292 FNCNVWDALKADRAGVLAGHDN--------------------RVSCLGVTDDGMAVATGS 331

Query: 601 SSKYICMYD 609
              ++ +++
Sbjct: 332 WDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  115 bits (289), Expect = 9e-29
 Identities = 45/302 (14%), Positives = 86/302 (28%), Gaps = 19/302 (6%)

Query: 131 FELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRD 190
               RTL     K+ A++W  DS  L+  S+D  + ++          TNK   +     
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT------TNKVHAIPLRSS 98

Query: 191 SVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTP----- 245
            V+ C ++          +  I     + +   +    +                     
Sbjct: 99  WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV 158

Query: 246 -------ERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVC 298
                            +   F+     V +        + V G  +    L+ + + +C
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 218

Query: 299 IHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDVNCLAY 357
               +     I    F   GN    G      +L       E            +  +++
Sbjct: 219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278

Query: 358 SPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRA 417
           S   +LL  G DD    VW             H N V+ L    +  ++ + S D  ++ 
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

Query: 418 WD 419
           W+
Sbjct: 339 WN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  102 bits (253), Expect = 5e-24
 Identities = 45/286 (15%), Positives = 99/286 (34%), Gaps = 4/286 (1%)

Query: 265 SKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFG 324
           +K+ A  +     ++V    +G   ++       +H + +    + T  +   GN++  G
Sbjct: 56  AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115

Query: 325 CA--KLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGF 382
                     +        + ++   +          D   + T + D    +W + +G 
Sbjct: 116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQ 175

Query: 383 CFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLAS 442
              TFT HT  V +L    +    +S + D + + WD+      +TFT   S    ++  
Sbjct: 176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES-DINAICF 234

Query: 443 DQSGEVICAGTLD-SFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTV 501
             +G     G+ D +  +F        +          +  + FS +   L +   D   
Sbjct: 235 FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294

Query: 502 RLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWD 547
            +W+  +   +     H + V  +    DG  +A  + D  +  W+
Sbjct: 295 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.1 bits (170), Expect = 2e-13
 Identities = 44/333 (13%), Positives = 94/333 (28%), Gaps = 56/333 (16%)

Query: 52  SSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG 111
            + I  +    D   L++  ++ +    + +                             
Sbjct: 55  LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT--------------------------- 87

Query: 112 TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVK 171
                                 +  +   +  V    ++P  NY+  G  D    ++ +K
Sbjct: 88  --------------------NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127

Query: 172 E---KLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDG 228
                ++                 +     V    D    ++ I       ++     D 
Sbjct: 128 TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV 187

Query: 229 KIDETMEDSEPPSPGTPERRVKKWGL---LRKDDFSQAPSKVTACDYHRGLDMVVVGFSN 285
                  D+     G  +   K W +   + +  F+   S + A  +    +    G  +
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247

Query: 286 GVFGLYQMPDFVCIHLLSISREK--ITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYIL 343
               L+ +     +   S       IT+  F++ G  L+ G        VW+        
Sbjct: 248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD-FNCNVWDALKADRAG 306

Query: 344 KQQGHYFDVNCLAYSPDSQLLATGADDNKVKVW 376
              GH   V+CL  + D   +ATG+ D+ +K+W
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.2 bits (165), Expect = 9e-13
 Identities = 23/139 (16%), Positives = 50/139 (35%), Gaps = 11/139 (7%)

Query: 34  VSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFK 93
             + D+ +           S+I  I   P+G    T  ++  C   +L     L      
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267

Query: 94  Y---PVNAILFSPNGKYIAVGTG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNW 149
                + ++ FS +G+ +  G       +W       +    +    LA  +++V+ L  
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVW-------DALKADRAGVLAGHDNRVSCLGV 320

Query: 150 SPDSNYLLVGSKDLAVRLF 168
           + D   +  GS D  ++++
Sbjct: 321 TDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.7 bits (122), Expect = 2e-07
 Identities = 18/80 (22%), Positives = 33/80 (41%)

Query: 468 RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVY 527
           R    L GH   ++ + +   +  L S+S D  + +W+ +           +  V+T  Y
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105

Query: 528 RPDGRQLACSTLDGQIHFWD 547
            P G  +AC  LD     ++
Sbjct: 106 APSGNYVACGGLDNICSIYN 125

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  102 bits (253), Expect = 8e-24
 Identities = 69/339 (20%), Positives = 125/339 (36%), Gaps = 55/339 (16%)

Query: 309 ITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHY------------------F 350
           +    F+  G +L  GC       V+     S + +                        
Sbjct: 65  VCCVKFSNDGEYLATGCN--KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDL 122

Query: 351 DVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSAS 410
            +  + +SPD + LATGA+D  +++W + +    +    H   + +L +  +   L+S S
Sbjct: 123 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 182

Query: 411 LDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRL- 469
            D TVR WDL   +   T +       V+  S   G+ I AG+LD   + VW  +TG L 
Sbjct: 183 GDRTVRIWDLRTGQCSLTLSIEDGVTTVA-VSPGDGKYIAAGSLDR-AVRVWDSETGFLV 240

Query: 470 ------LDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKG------------ 511
                  +  +GH+  V+ +VF+    ++ S S D++V+LWN+                 
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300

Query: 512 SVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTD 571
            V    H   VL+V    +   +   + D  + FWD  +G  +  ++G R+         
Sbjct: 301 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--------- 351

Query: 572 RRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV 610
                +  S           + +    G       ++  
Sbjct: 352 -----SVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 98.3 bits (243), Expect = 2e-22
 Identities = 58/389 (14%), Positives = 127/389 (32%), Gaps = 43/389 (11%)

Query: 49  VESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYI 108
           ++S S    +    +  ++L      R   + LH       +     V  + FS +G+Y+
Sbjct: 23  LDSQSVPDALKKQTNDYYILYNPALPREIDVELH-----KSLDHTSVVCCVKFSNDGEYL 77

Query: 109 AVGTGKLVQIWRSPGFK-----------KEVFAFELIRTLADCNDKVTALNWSPDSNYLL 157
           A G  K  Q++R                 +        +    +  + ++ +SPD  +L 
Sbjct: 78  ATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137

Query: 158 VGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCY 217
            G++D  +R++ ++ +   +        +   D        V    D+  RI+ +     
Sbjct: 138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 197

Query: 218 MFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLD 277
             +         +  +  D +  + G+ +R V+ W         +  S+  +   H+   
Sbjct: 198 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD-- 255

Query: 278 MVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR 337
                    V+ +    D     ++S S ++       +  N                  
Sbjct: 256 --------SVYSVVFTRD--GQSVVSGSLDRSVKLWNLQNANNKSD---------SKTPN 296

Query: 338 SESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTAL 397
           S +  +   GH   V  +A + + + + +G+ D  V  W   SG   +    H N+V ++
Sbjct: 297 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 356

Query: 398 H------FMANNHSLLSASLDGTVRAWDL 420
                       +   + S D   R W  
Sbjct: 357 AVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (133), Expect = 9e-09
 Identities = 21/141 (14%), Positives = 49/141 (34%), Gaps = 27/141 (19%)

Query: 52  SSNICRIAVSPDGTFLLTVDENQRCHFINL-------------HCHVVLHRVRFKYPVNA 98
             ++  +  + DG  +++   ++     NL                  +  +  K  V +
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313

Query: 99  ILFSPNGKYIAVGTG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTAL------NWSP 151
           +  + N +YI  G+  + V  W       +  +   +  L    + V ++      +  P
Sbjct: 314 VATTQNDEYILSGSKDRGVLFW-------DKKSGNPLLMLQGHRNSVISVAVANGSSLGP 366

Query: 152 DSNYLLVGSKDLAVRLFYVKE 172
           + N    GS D   R++  K+
Sbjct: 367 EYNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 3e-05
 Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 23/108 (21%)

Query: 461 VWSMKTGRLLDI----LSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGK------ 510
           +++    R +D+       H   V  + FS     LA+   +KT +++ V +G       
Sbjct: 42  LYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLS 100

Query: 511 ------------GSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFW 546
                        +  S      + +V + PDG+ LA    D  I  W
Sbjct: 101 DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIW 148

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =   99 bits (247), Expect = 4e-23
 Identities = 45/417 (10%), Positives = 98/417 (23%), Gaps = 72/417 (17%)

Query: 95  PVNAILFSPNGKYIAVGTG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDS 153
           P++   ++ +   IA+      V I+   G K     +  +  L + N +VT ++W+PDS
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-----WVQVHELKEHNGQVTGVDWAPDS 63

Query: 154 NYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIA 213
           N ++    D    ++ +K +          +    R                   I    
Sbjct: 64  NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 123

Query: 214 RDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYH 273
            +     W        I  T+   +                 R         +       
Sbjct: 124 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP 183

Query: 274 RGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLV 333
                                 F  +   S S       V        V   +    + +
Sbjct: 184 W----------------GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCL 227

Query: 334 WEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNA 393
            +   +  +         +  + +  +S L+A G D     ++T  S    ++F    + 
Sbjct: 228 ADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCF-PVLFTYDSAAGKLSFGGRLDV 286

Query: 394 VTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGT 453
                           +LD    +                                    
Sbjct: 287 PKQSSQRGLTARERFQNLDKKASSEG---------------------------------- 312

Query: 454 LDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSP----TNATLASSSWDKTVRLWNV 506
                             + S H+  V  +          +   ++  D  + +W+V
Sbjct: 313 -----------SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.5 bits (212), Expect = 1e-18
 Identities = 32/265 (12%), Positives = 77/265 (29%), Gaps = 9/265 (3%)

Query: 352 VNCLAYSPDSQLLATGADDNKVKVWTVSSG--FCFVTFTEHTNAVTALHFMANNHSLLSA 409
           ++C A++ D   +A   ++++V ++  S           EH   VT + +  +++ +++ 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 410 SLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRL 469
             D     W L       T       +          E   A    S  I +   +    
Sbjct: 70  GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129

Query: 470 LDILSGHEGPVHGLVFSPTNATLA----SSSWDKTVRLWNVFEGKGSVESFPHTHDVLTV 525
             +    + P+   V S      +    + S D   R+++ +  +      P        
Sbjct: 130 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 189

Query: 526 VYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFT 585
                    +              NG  +  +     +           A  +S      
Sbjct: 190 FGELMFESSSSC--GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLL 247

Query: 586 TLCYSADGSYILAGGSSKYICMYDV 610
            + +  + S ++A G   +  ++  
Sbjct: 248 AVTFITESS-LVAAGHDCFPVLFTY 271

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.8 bits (200), Expect = 5e-17
 Identities = 45/327 (13%), Positives = 92/327 (28%), Gaps = 26/327 (7%)

Query: 303 SISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ--QGHYFDVNCLAYSPD 360
           S   E I+   +N+    +        ++ ++E     ++     + H   V  + ++PD
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNN-HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD 62

Query: 361 SQLLATGADDNKVKVWTVSSGF--CFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAW 418
           S  + T   D    VWT+        +       A   + +  N       S    +   
Sbjct: 63  SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 122

Query: 419 DLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFE--IFVWSMKTGRLLDI---- 472
              +  ++            ++ S             S +    ++S     + +     
Sbjct: 123 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT 182

Query: 473 --------------LSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPH 518
                          S   G VHG+ FS   + +A  S D TV L +  +          
Sbjct: 183 PWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE 242

Query: 519 THDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANS 578
           T  +L V +  +   +A    D     +   +     +  GR D+          +    
Sbjct: 243 TLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERF 301

Query: 579 SSGKCFTTLCYSADGSYILAGGSSKYI 605
            +     +   SA     L       +
Sbjct: 302 QNLDKKASSEGSAAAGAGLDSLHKNSV 328

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.7 bits (184), Expect = 4e-15
 Identities = 45/374 (12%), Positives = 96/374 (25%), Gaps = 33/374 (8%)

Query: 55  ICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFK---YPVNAILFSPNGKYIAVG 111
           I   A + D T +     N   H      +  +     K     V  + ++P+   I   
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 112 TG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYV 170
              +   +W   G   +     L       N     + W+P+     VGS    + + Y 
Sbjct: 70  GTDRNAYVWTLKGRTWKPTLVIL-----RINRAARCVRWAPNEKKFAVGSGSRVISICYF 124

Query: 171 KEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKI 230
           +++                     C          V  +        + +        +I
Sbjct: 125 EQENDWWV----------------CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK-CRI 167

Query: 231 DETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGL 290
                      P       K        + S +   V    +      V     +    L
Sbjct: 168 FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCL 227

Query: 291 YQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYF 350
                 + +  L+     +    F    + +  G       +++ + S +  L   G   
Sbjct: 228 ADADKKMAVATLASETLPLLAVTFITESSLVAAGHD--CFPVLFTYDSAAGKLSFGGRLD 285

Query: 351 DVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMA----NNHSL 406
                +    +        D K      S+       + H N+V+ +  ++         
Sbjct: 286 VPKQSSQRGLTARERFQNLDKKASSE-GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQF 344

Query: 407 LSASLDGTVRAWDL 420
            +  +DG +  WD+
Sbjct: 345 CTTGMDGGMSIWDV 358

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 38/335 (11%), Positives = 84/335 (25%), Gaps = 29/335 (8%)

Query: 52  SSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG 111
           +  +  +  +PD   ++T   ++  +   L        +       A             
Sbjct: 51  NGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKF 110

Query: 112 T-GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYV 170
             G   ++     F++E   +            V +L+W P+S  L  GS D   R+F  
Sbjct: 111 AVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA 170

Query: 171 KEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKI 230
             K                 S +     + + +     ++ +          +  +D  +
Sbjct: 171 YIKEVEERPAPT-----PWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV 225

Query: 231 DETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGL 290
                D +                      +     + A  +     +V  G       L
Sbjct: 226 CLADADKKMA----------------VATLASETLPLLAVTFITESSLVAAGHDCFPV-L 268

Query: 291 YQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYF 350
           +               +    +    L     F    L +    E  + +       H  
Sbjct: 269 FTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQN--LDKKASSEGSAAAGAGLDSLHKN 326

Query: 351 DVNCLAYSPDSQ----LLATGADDNKVKVWTVSSG 381
            V+ ++     +       T   D  + +W V S 
Sbjct: 327 SVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 361

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.2 bits (227), Expect = 1e-20
 Identities = 65/342 (19%), Positives = 116/342 (33%), Gaps = 31/342 (9%)

Query: 182 PFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPP- 240
           P +L GH D V+ C           NRI + + D  +  W  S   GK   T+       
Sbjct: 9   PKVLKGHDDHVITCLQFCG------NRIVSGSDDNTLKVW--SAVTGKCLRTLVGHTGGV 60

Query: 241 -SPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCI 299
            S    +  +      R      A +       +     V     +    +    D    
Sbjct: 61  WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLR 120

Query: 300 HLLSISREKITT-------AVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDV 352
                + + +             +     V   A    + VW+  +E+ +   QGH   V
Sbjct: 121 VWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 180

Query: 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412
                  D   + +G+ D  ++VW V +G C  T T H +  + +     ++ L+S + D
Sbjct: 181 YS--LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNAD 236

Query: 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDI 472
            TV+ WD+   +  +T   P+  Q        +   +   + D   + +W +KTG  +  
Sbjct: 237 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDG-TVKLWDLKTGEFIRN 295

Query: 473 L-----SGHEGPVHGLVFSPTNATLASSSWDKT----VRLWN 505
           L      G  G V  +  S T    A  S + T    + + +
Sbjct: 296 LVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.2 bits (214), Expect = 5e-19
 Identities = 57/319 (17%), Positives = 110/319 (34%), Gaps = 34/319 (10%)

Query: 336 WRSESYILKQ--QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNA 393
           WR       +  +GH   V           + +G+DDN +KVW+  +G C  T   HT  
Sbjct: 1   WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59

Query: 394 VTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGT 453
           V +     N     S      V   +     +     T + R           + + +G+
Sbjct: 60  VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM-----HLHEKRVVSGS 114

Query: 454 LDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSV 513
            D   + VW ++TG+ L +L GH   V           + S ++D  V++W+        
Sbjct: 115 RD-ATLRVWDIETGQCLHVLMGHVAAVR--CVQYDGRRVVSGAYDFMVKVWDPETETCLH 171

Query: 514 ESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRR 573
               HT+       + DG  +   +LD  I  WD   G  ++T+ G + ++ G  + D  
Sbjct: 172 TLQGHTNR--VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI 229

Query: 574 SAANSSSGKC---------------------FTTLCYSADGSYILAGGSSKYICMYDVAD 612
             + ++                             C   + ++++       + ++D+  
Sbjct: 230 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT 289

Query: 613 QVLLRRFQITHNLSLDGVI 631
              +R      +    GV+
Sbjct: 290 GEFIRNLVTLESGGSGGVV 308

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 3e-07
 Identities = 34/329 (10%), Positives = 93/329 (28%), Gaps = 25/329 (7%)

Query: 59  AVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-FKYPVNAILFSPNGKYIAVGTGKLVQ 117
            +   G  +++  ++      +      L  +      V +     N          L  
Sbjct: 22  CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKV 81

Query: 118 IWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGI 177
                G                     T          ++ GS+D  +R++ ++      
Sbjct: 82  WNAETGECIHTL----------YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLH 131

Query: 178 HTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDS 237
                      R         V    D + +++    +  + +    G+  ++     D 
Sbjct: 132 VLMGHVA--AVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHT--LQGHTNRVYSLQFDG 187

Query: 238 EPPSPGTPERRVKKWGL-LRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDF 296
                G+ +  ++ W +       +    +          +++V G ++    ++ +   
Sbjct: 188 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG 247

Query: 297 VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYI-----LKQQGHYFD 351
            C+  L    +  +     +     V   +  G + +W+ ++  +I     L+  G    
Sbjct: 248 QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 307

Query: 352 VNCLAYSPDSQLLATGADDN----KVKVW 376
           V  +  S    + A G+ +     K+ V 
Sbjct: 308 VWRIRASNTKLVCAVGSRNGTEETKLLVL 336

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.8 bits (218), Expect = 7e-20
 Identities = 55/303 (18%), Positives = 97/303 (32%), Gaps = 58/303 (19%)

Query: 345 QQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHF----- 399
           +      V CL    D Q + +G  DN +K+W  ++  C    T HT +V  L +     
Sbjct: 11  RSETSKGVYCL--QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVI 68

Query: 400 ---------------------------------MANNHSLLSASLDGTVRAWDLFRYRNF 426
                                              NN  +++ S D ++  WD+    + 
Sbjct: 69  ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI 128

Query: 427 RTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFS 486
                    +      D   + I + + D   I VW+  T   +  L+GH+  +  L + 
Sbjct: 129 TLRRVLVGHRAAVNVVDFDDKYIVSASGDRT-IKVWNTSTCEFVRTLNGHKRGIACLQYR 187

Query: 487 PTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFW 546
                + S S D T+RLW++  G          H+ L    R D +++     DG+I  W
Sbjct: 188 DR--LVVSGSSDNTIRLWDIECGA--CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVW 243

Query: 547 DPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYIC 606
           D +         G   +              +             D   I++      I 
Sbjct: 244 DLVAALDPRAPAGTLCL-------------RTLVEHSGRVFRLQFDEFQIVSSSHDDTIL 290

Query: 607 MYD 609
           ++D
Sbjct: 291 IWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.7 bits (197), Expect = 4e-17
 Identities = 47/301 (15%), Positives = 97/301 (32%), Gaps = 30/301 (9%)

Query: 134 IRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVV 193
           I   ++ +  V  L    D   ++ G +D  ++++     L+         L GH  SV+
Sbjct: 8   IHCRSETSKGVYCL--QYDDQKIVSGLRDNTIKIWDK-NTLECKRI-----LTGHTGSVL 59

Query: 194 GCFFS----VDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRV 249
              +     +   +D   R++ +     + +                            V
Sbjct: 60  CLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV 119

Query: 250 KKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGF--SNGVFGLYQMPDFVCIHLLSISRE 307
                       +      A       D   +     +    ++       +  L+  + 
Sbjct: 120 WDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR 179

Query: 308 KITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATG 367
            I    +      +V G +    + +W+    + +   +GH   V C     D++ + +G
Sbjct: 180 GIACLQYR--DRLVVSGSSD-NTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSG 234

Query: 368 ADDNKVKVWTVSSG---------FCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAW 418
           A D K+KVW + +           C  T  EH+  V  L F  +   ++S+S D T+  W
Sbjct: 235 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIW 292

Query: 419 D 419
           D
Sbjct: 293 D 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 3e-05
 Identities = 34/287 (11%), Positives = 77/287 (26%), Gaps = 26/287 (9%)

Query: 101 FSPNGKYIAVGTG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVG 159
              + + I  G     ++IW       +    E  R L      V  L +      +++ 
Sbjct: 21  LQYDDQKIVSGLRDNTIKIW-------DKNTLECKRILTGHTGSVLCLQY---DERVIIT 70

Query: 160 SKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMF 219
               +    +     + ++T                      K   +      +      
Sbjct: 71  GSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL 130

Query: 220 SWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLL-RKDDFSQAPSKVTACDYHRGLDM 278
                G+   ++    D +     + +R +K W     +   +    K           +
Sbjct: 131 RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL 190

Query: 279 VVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRS 338
           VV G S+    L+ +    C+    +              N  +   A  G++ VW+  +
Sbjct: 191 VVSGSSDNTIRLWDIECGACLR---VLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVA 247

Query: 339 ESYILKQ---------QGHYFDVNCLAYSPDSQLLATGADDNKVKVW 376
                             H   V  L +  D   + + + D+ + +W
Sbjct: 248 ALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 12/109 (11%), Positives = 38/109 (34%), Gaps = 4/109 (3%)

Query: 61  SPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIW- 119
                 +++   +      ++ C   L  +     +   +   N + ++      +++W 
Sbjct: 185 QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWD 244

Query: 120 -RSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRL 167
             +    +       +RTL + + +V  L +  D   ++  S D  + +
Sbjct: 245 LVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI 291

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 88.4 bits (217), Expect = 1e-19
 Identities = 41/326 (12%), Positives = 78/326 (23%), Gaps = 36/326 (11%)

Query: 96  VNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNY 155
              +  +P G  I    G  V           V +        + + + T    SP   Y
Sbjct: 20  AVVLGNTPAGDKIQYCNGTSVYTV-------PVGSLTDTEIYTEHSHQTTVAKTSPSGYY 72

Query: 156 LLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARD 215
              G     VR++   +    + T  P      +D              +    +     
Sbjct: 73  CASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL 132

Query: 216 CYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRG 275
               +   +           D +P  P           +   +                 
Sbjct: 133 FDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFV 192

Query: 276 LDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWE 335
             +      +           V  + +  +                              
Sbjct: 193 HSVRYNPDGSLFASTGGDGTIVLYNGVDGT----------------------------KT 224

Query: 336 WRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTN-AV 394
              E   LK   H   V  L +SPD   +A+ + D  +K+W V++     T    T    
Sbjct: 225 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED 284

Query: 395 TALHFMANNHSLLSASLDGTVRAWDL 420
             L  +    +L+S S +G +   + 
Sbjct: 285 QQLGIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 71.1 bits (172), Expect = 8e-14
 Identities = 52/298 (17%), Positives = 91/298 (30%), Gaps = 18/298 (6%)

Query: 352 VNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASL 411
              L  +P    +    +   V    V S      +TEH++  T      + +   S  +
Sbjct: 20  AVVLGNTPAGDKIQY-CNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78

Query: 412 DGTVRAWDLFRYRNFRTFTTPSSRQFVS---LASDQSGEVICAGTLDSFEIFVWSMKTGR 468
            G VR WD  +  +    T P     V      S+           + F           
Sbjct: 79  HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS 138

Query: 469 LLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR 528
             ++                   + S S D TV ++     K       HT  V +V Y 
Sbjct: 139 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN 198

Query: 529 PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLC 588
           PDG   A +  DG I  ++ ++G      E                  N +       L 
Sbjct: 199 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK-------------NVAHSGSVFGLT 245

Query: 589 YSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMD 646
           +S DG+ I +  + K I +++VA   + +          D  +  + +K    +   +
Sbjct: 246 WSPDGTKIASASADKTIKIWNVATLKVEKTIP-VGTRIEDQQLGIIWTKQALVSISAN 302

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 58.8 bits (140), Expect = 9e-10
 Identities = 43/307 (14%), Positives = 83/307 (27%), Gaps = 17/307 (5%)

Query: 257 KDDFSQAPS----KVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTA 312
              F   P                D +       V+    +       + +    + T A
Sbjct: 6   TALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVY-TVPVGSLTDTEIYTEHSHQTTVA 64

Query: 313 VFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLL-ATGADD 370
             +  G +   G      ++      +             V  +++  +S+ + A G   
Sbjct: 65  KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR 124

Query: 371 NKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFT 430
            +     +                        +      S                   T
Sbjct: 125 ERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST 184

Query: 431 TPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDI-------LSGHEGPVHGL 483
                +FV          + A T     I +++   G    +          H G V GL
Sbjct: 185 FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL 244

Query: 484 VFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVY--RPDGRQLACSTLDG 541
            +SP    +AS+S DKT+++WNV   K   ++ P    +           + L   + +G
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLK-VEKTIPVGTRIEDQQLGIIWTKQALVSISANG 303

Query: 542 QIHFWDP 548
            I+F +P
Sbjct: 304 FINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.1 bits (128), Expect = 3e-08
 Identities = 28/322 (8%), Positives = 75/322 (23%), Gaps = 30/322 (9%)

Query: 143 KVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKK 202
               L  +P  + +   +   +V    V             +   H         S    
Sbjct: 19  TAVVLGNTPAGDKIQYCNGT-SVYTVPVGSL------TDTEIYTEHSHQTTVAKTSPSG- 70

Query: 203 TDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQ 262
                   +      +  W  +     +  T+     P          K      +   +
Sbjct: 71  ----YYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER 126

Query: 263 APSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLV 322
                         ++     +           F  I                  G+   
Sbjct: 127 FGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIIS-----------------GSDDN 169

Query: 323 FGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGF 382
                 G    ++     +        ++ +   ++           +      T     
Sbjct: 170 TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFED 229

Query: 383 CFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLAS 442
             +    H+ +V  L +  +   + SAS D T++ W++   +  +T    +  +   L  
Sbjct: 230 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI 289

Query: 443 DQSGEVICAGTLDSFEIFVWSM 464
             + + + + + + F I   + 
Sbjct: 290 IWTKQALVSISANGF-INFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.2 bits (97), Expect = 2e-04
 Identities = 31/333 (9%), Positives = 70/333 (21%), Gaps = 37/333 (11%)

Query: 46  TLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-FKYPVNAILFSPN 104
           +LP  +      +  +P G  +   +     + + +             +       SP+
Sbjct: 11  SLPRTARGTAVVLGNTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPS 69

Query: 105 GKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLA 164
           G Y A G                             N ++     +       +      
Sbjct: 70  GYYCASGD-------------------------VHGNVRIWDTTQTTHILKTTIPVFSGP 104

Query: 165 VRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFS 224
           V+      + K I              +     S    T +   + ++           S
Sbjct: 105 VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIIS 164

Query: 225 GNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFS 284
           G+D       E        T     K    +R +      +           + V     
Sbjct: 165 GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD---- 220

Query: 285 NGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILK 344
               G                   +    ++  G  +    A    + +W   +      
Sbjct: 221 ----GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD-KTIKIWNVATLKVEKT 275

Query: 345 QQGHY-FDVNCLAYSPDSQLLATGADDNKVKVW 376
                  +   L      Q L + + +  +   
Sbjct: 276 IPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.0 bits (211), Expect = 1e-18
 Identities = 43/325 (13%), Positives = 90/325 (27%), Gaps = 19/325 (5%)

Query: 58  IAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQ 117
           +   PD      +  + R           ++ +     V A+  S   +++  G    V+
Sbjct: 26  VPFPPDALIGPGIPRHARQ----------INTLNHGEVVCAVTISNPTRHVYTGGKGCVK 75

Query: 118 IWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGI 177
           +W       +  +        + ++ + +    PD   L+VG +   + ++ +      I
Sbjct: 76  VWDISHPGNK--SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI 133

Query: 178 HTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDS 237
                          +     V         I             F G+          +
Sbjct: 134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193

Query: 238 EPPSPGTPER----RVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQM 293
           +     T       R       R+       S++ +  Y    + + VG  +        
Sbjct: 194 DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVE-VLH 252

Query: 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVN 353
            +    + L +    + +  F   G W V        L  W     +  + Q      V 
Sbjct: 253 VNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD-NLLNAWRTPYGA-SIFQSKESSSVL 310

Query: 354 CLAYSPDSQLLATGADDNKVKVWTV 378
               S D + + TG+ D K  V+ V
Sbjct: 311 SCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.6 bits (197), Expect = 7e-17
 Identities = 46/338 (13%), Positives = 90/338 (26%), Gaps = 28/338 (8%)

Query: 277 DMVVVGFS-NGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFG---CAKLGQLL 332
            M  V F  + + G         I+ L+   E +     +     +  G   C K+  + 
Sbjct: 22  QMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTISNPTRHVYTGGKGCVKVWDIS 80

Query: 333 VWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTN 392
               +S    L        +      PD   L  G  +         +        E T+
Sbjct: 81  HPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG-GEASTLSIWDLAAPTPRIKAELTS 139

Query: 393 AVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAG 452
           +  A + +A +          +     ++   N             +   D S +     
Sbjct: 140 SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW 199

Query: 453 TLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGS 512
           T                          +  L + PT   LA       V + +V +    
Sbjct: 200 TGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-K 258

Query: 513 VESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDR 572
            +   H   VL++ +   G+    +  D  ++ W    G  ++  +    +         
Sbjct: 259 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSV--------- 309

Query: 573 RSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV 610
                        +   S D  YI+ G   K   +Y+V
Sbjct: 310 ------------LSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.9 bits (195), Expect = 1e-16
 Identities = 49/289 (16%), Positives = 88/289 (30%), Gaps = 12/289 (4%)

Query: 265 SKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREK-----ITTAVFNELGN 319
             V A         V  G   G   ++ +        +S          I +      G 
Sbjct: 52  EVVCAVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC 110

Query: 320 WLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTV 378
            L+ G       +      +     +          LA SPDS++  +   D  + VW +
Sbjct: 111 TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL 170

Query: 379 SSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFV 438
            +      F  HT+  + +    +   L +  LD TVR+WDL   R  +     S    +
Sbjct: 171 HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSL 230

Query: 439 SLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWD 498
                     +   + +   + V           L  HE  V  L F+       S+  D
Sbjct: 231 GYCPTGEWLAVGMESSNVEVLHVNKPDK----YQLHLHESCVLSLKFAYCGKWFVSTGKD 286

Query: 499 KTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWD 547
             +  W    G  S+     +  VL+     D + +   + D +   ++
Sbjct: 287 NLLNAWRTPYGA-SIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (184), Expect = 3e-15
 Identities = 54/412 (13%), Positives = 93/412 (22%), Gaps = 87/412 (21%)

Query: 95  PVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSN 154
           P  +   + +G+   V           PG  +       I TL +  + V A+  S  + 
Sbjct: 11  PAYSFHVTADGQMQPVPFPP--DALIGPGIPRHA---RQINTL-NHGEVVCAVTISNPTR 64

Query: 155 YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR 214
           ++  G K   V+++ +               L   + +  C    D  T           
Sbjct: 65  HVYTGGKG-CVKVWDISHP-GNKSPVSQLDCLNRDNYIRSCKLLPDGCTL---------- 112

Query: 215 DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHR 274
                             T       +   P           K  FS       A     
Sbjct: 113 -IVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH 171

Query: 275 GLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVW 334
              +V     +               L +   +                           
Sbjct: 172 NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVR----------------------S 209

Query: 335 EWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAV 394
               E   L+Q      +  L Y P  + LA G + + V+V  V+          H + V
Sbjct: 210 WDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK-PDKYQLHLHESCV 268

Query: 395 TALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTL 454
            +L F       +S   D  + AW                                    
Sbjct: 269 LSLKFAYCGKWFVSTGKDNLLNAWRT---------------------------------- 294

Query: 455 DSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNV 506
                       G  +   S     V     S  +  + + S DK   ++ V
Sbjct: 295 ----------PYGASI-FQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 8e-09
 Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 9/117 (7%)

Query: 53  SNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGT 112
           S I  +   P G +L    E+     ++++          +  V ++ F+  GK+     
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTG 284

Query: 113 G-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLF 168
              L+  WR+P           I    + +  V + + S D  Y++ GS D    ++
Sbjct: 285 KDNLLNAWRTPYGA-------SIFQSKE-SSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.5 bits (207), Expect = 4e-18
 Identities = 28/295 (9%), Positives = 78/295 (26%), Gaps = 18/295 (6%)

Query: 345 QQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFC---FVTFTEHTNAVTALHFMA 401
           +Q     ++ +   P   LL   + D  + V+           +    + + +   +F+ 
Sbjct: 7   EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66

Query: 402 NNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFV 461
           N    +                       T +          + G+           I V
Sbjct: 67  NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126

Query: 462 WSMKTGRLLDILSGHEGPV------HGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVES 515
              +      I   +                  ++ L     +  V+ + +   +    +
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT 186

Query: 516 F----PHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTD 571
                         +   +    ACS++DG++      +    Y                
Sbjct: 187 IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS-----KRFAFRCH 241

Query: 572 RRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLS 626
           R +  +++      ++ +S    ++   GS   I  +++  +  ++ F   +  S
Sbjct: 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDS 296

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.4 bits (204), Expect = 1e-17
 Identities = 33/323 (10%), Positives = 88/323 (27%), Gaps = 39/323 (12%)

Query: 132 ELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDS 191
           ++++      D ++ +   P  + LL+ S D ++ ++                 L ++  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFD---IQAKNVDLLQSLRYKHP 58

Query: 192 VVGCFFSVDKKT-------DKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGT 244
           ++ C F  +                  +       +   +  +  I    +  +      
Sbjct: 59  LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA 118

Query: 245 PERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSI 304
               + +    R         K    +  +  + +    +N    +  M +         
Sbjct: 119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLP 178

Query: 305 SREKITTAVFNELGNWLVFGCAKL-------------GQLLVWEWRSESYILKQ------ 345
             E     +      + +   A L             G++ V  +  +            
Sbjct: 179 LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238

Query: 346 ---------QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTA 396
                        + VN + +SP  + L T   D  +  W + +      F +  N  + 
Sbjct: 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSV 297

Query: 397 LHFMANNHSLLSASLDGTVRAWD 419
           +    +++ L  A+ D T +   
Sbjct: 298 VKIACSDNILCLATSDDTFKTNA 320

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.8 bits (161), Expect = 3e-12
 Identities = 10/82 (12%), Positives = 29/82 (35%), Gaps = 3/82 (3%)

Query: 468 RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVE---SFPHTHDVLT 524
           +++ I    +  +  +   P+ + L  +SWD ++ ++       +V+   S  + H +L 
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 525 VVYRPDGRQLACSTLDGQIHFW 546
             +  +                
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILK 83

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.0 bits (146), Expect = 2e-10
 Identities = 29/346 (8%), Positives = 88/346 (25%), Gaps = 50/346 (14%)

Query: 298 CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESY---ILKQQGHYFDVNC 354
            + +    ++ I+        + L+      G L V+++  ++    +L+   +   + C
Sbjct: 3   IVQIEQAPKDYISDIKIIPSKSLLLITSWD-GSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 355 LAYSPDS-QLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDG 413
             +  ++   +  G    ++    +     F   T +   +            L A+   
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121

Query: 414 TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFE-----IFVWSMKTGR 468
            +      R          +     +   ++   +    +          +  + +    
Sbjct: 122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCE 181

Query: 469 LLDILSGHEGP----VHGLVFSPTNATLASSSWDKTVRLWNVFEG--------------- 509
             +      G         +        A SS D  V +    +                
Sbjct: 182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241

Query: 510 KGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLM 569
           + +++     + V ++ + P  + L  +  DG I  W+    + +               
Sbjct: 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK---------- 291

Query: 570 TDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVL 615
                          + +  +   + +    S          DQ +
Sbjct: 292 -----------FNEDSVVKIACSDNILCLATSDDTFKTNAAIDQTI 326

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 4e-08
 Identities = 31/366 (8%), Positives = 80/366 (21%), Gaps = 32/366 (8%)

Query: 43  KTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLH----CHVVLHRVRFKYPVNA 98
           + V +       I  I + P  + LL    +                +L  +R+K+P+  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 99  ILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLV 158
             F  N            +I +        F             ++              
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA--- 118

Query: 159 GSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYM 218
                                    ++                  +   +      D   
Sbjct: 119 ------------------SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS 160

Query: 219 FSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDM 278
                  N+ ++            GT E    K+ +       +             + +
Sbjct: 161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAV 220

Query: 279 VVVGFSNGVFGLYQMPDFVCIHLLSISREKI--TTAVFNELGNWLVFGCAKLGQLLVWEW 336
                    +   +   F C  L            ++     +  ++     G +  W  
Sbjct: 221 EFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL 280

Query: 337 RSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTA 396
           ++    +K    + + + +  +    +L     D+  K           T   + +++  
Sbjct: 281 QTRK-KIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTN----AAIDQTIELNASSIYI 335

Query: 397 LHFMAN 402
           +    N
Sbjct: 336 IFDYEN 341

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.4 bits (191), Expect = 3e-16
 Identities = 48/333 (14%), Positives = 85/333 (25%), Gaps = 35/333 (10%)

Query: 96  VNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLA-DCNDKVTALNWSP--D 152
              + + P    IA   GK   +               +       +  VT + +SP   
Sbjct: 20  TTHLSYDPTTNAIAYPCGKSAFVRC---LDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKG 76

Query: 153 SNYLLVGSKDLAVRLFYVKEKLKG--IHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIY 210
           S YL  G +   V ++      +   +  N           +    +  +       R+ 
Sbjct: 77  SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG-----RRLC 131

Query: 211 TIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTAC 270
            +      F    S + G     +            ++ +    +   D           
Sbjct: 132 VVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP 191

Query: 271 DYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQ 330
                 D       + V  +   PD                          V    K+  
Sbjct: 192 FKFSASDRTHHKQGSFVRDVEFSPDSGEFV-------------------ITVGSDRKISC 232

Query: 331 LLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEH 390
                     YI   Q             DSQ  AT   D  ++VW V++  C   +T  
Sbjct: 233 FDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD 292

Query: 391 TNAVTALHFM---ANNHSLLSASLDGTVRAWDL 420
              +           N  ++S SLDGT+  ++L
Sbjct: 293 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.3 bits (175), Expect = 3e-14
 Identities = 38/329 (11%), Positives = 75/329 (22%), Gaps = 38/329 (11%)

Query: 303 SISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQ--GHYFD-VNCLAYSP 359
           S  R   T   ++   N + + C K   +   +          Q  GH    V  + +SP
Sbjct: 14  STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 73

Query: 360 --DSQLLATGADDNKVKVWTVSSGFCFVTF--------TEHTNAVTALHFMANNHSLLSA 409
              SQ L +G +  KV VW  +      +               ++ + +      L   
Sbjct: 74  IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 133

Query: 410 SL--DGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGE--VICAGTLDSFEIFVWSMK 465
               D            +    +  S R              +                K
Sbjct: 134 GEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK 193

Query: 466 TGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLW----NVFEGKGSVESFPHTHD 521
                         V  + FSP +     +             +    K   +       
Sbjct: 194 FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG 253

Query: 522 VLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSG 581
            +  +   D ++ A    D  I  WD    + +                      +    
Sbjct: 254 GIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTL-----------------DKQQL 296

Query: 582 KCFTTLCYSADGSYILAGGSSKYICMYDV 610
                   +     I++      +  Y++
Sbjct: 297 GNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.1 bits (133), Expect = 7e-09
 Identities = 51/341 (14%), Positives = 107/341 (31%), Gaps = 46/341 (13%)

Query: 233 TMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVF-GLY 291
           ++++  PP P T                    +  T   Y    + +        F    
Sbjct: 4   SLKEIIPPQPSTQ------------------RNFTTHLSYDPTTNAIAYPCGKSAFVRCL 45

Query: 292 QMPDFVCIHLLSIS---REKITTAVFNEL--GNWLVFGCAKLGQLLVWEWRSESYILK-- 344
              D     ++  +      +TT  F+ +    +L  G    G+++VW W  +       
Sbjct: 46  DDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDES-GKVIVWGWTFDKESNSVE 104

Query: 345 ------QQGHYFDVNCLAYSPDSQLLATGAD--DNKVKVWTVSSGFCFVTFTEHTNAVTA 396
                  Q     ++ +++  + + L    +  DN     +  SG      + H+  + A
Sbjct: 105 VNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINA 164

Query: 397 LHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTP---SSRQFVSLASDQSGEVICAGT 453
            H   +         D     +       F                +             
Sbjct: 165 CHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITV 224

Query: 454 LDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPT---NATLASSSWDKTVRLWNVFEGK 510
               +I  +  K+G  L  +   + PV G +F+ +   +   A+   D T+R+W+V   K
Sbjct: 225 GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK 284

Query: 511 GSVESFPHTHDV----LTVVYRPDGRQLACSTLDGQIHFWD 547
              +       +    + VV   +GR +   +LDG ++F++
Sbjct: 285 CVQKWTLDKQQLGNQQVGVVATGNGR-IISLSLDGTLNFYE 324

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.5 bits (186), Expect = 8e-16
 Identities = 41/299 (13%), Positives = 91/299 (30%), Gaps = 28/299 (9%)

Query: 132 ELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDS 191
           E+++T++  N  +TAL  +P    L+ GS D  +  +      +            H + 
Sbjct: 4   EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----------DHSNL 48

Query: 192 VVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKK 251
           +V    S  ++   ++      +   +    F           +          +  + +
Sbjct: 49  IVSLDNSKAQEYSSIS-WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQ 107

Query: 252 WGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITT 311
                     +  S  +A    +    V +   N +         V   L +  R K + 
Sbjct: 108 SFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSY 167

Query: 312 AVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNC----------LAYSPDS 361
              +    ++  G      LL      E    +       +N                + 
Sbjct: 168 ISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE 227

Query: 362 QLLATGADDNKVKVWTVSSGF-CFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWD 419
            L+ATG+ D  + +++V            H + V  L +     +L+S+  D  ++ W+
Sbjct: 228 DLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW-ETPSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.4 bits (144), Expect = 2e-10
 Identities = 29/236 (12%), Positives = 71/236 (30%), Gaps = 11/236 (4%)

Query: 281 VGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES 340
           +  S          D           E  +        N            L+       
Sbjct: 52  LDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTG 111

Query: 341 YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFM 400
            I+K        + ++ S +   +     +             F   T      + +   
Sbjct: 112 DIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS 171

Query: 401 ANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFE-- 458
            +   + +  + G +  +DL       +     + +  +++   + +      ++     
Sbjct: 172 PSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA 231

Query: 459 -------IFVWSMKT-GRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNV 506
                  IF++S+K   +++  L+ H+  V+ L++   + TL SS  D  ++ WNV
Sbjct: 232 TGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.7 bits (132), Expect = 6e-09
 Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 9/81 (11%)

Query: 466 TGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTV 525
              +L  +SGH   +  L  +P    L S S+D  +  W+            H++ ++++
Sbjct: 2   HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQD-----HSNLIVSL 52

Query: 526 VYRPDGRQLACSTLDGQIHFW 546
                    + S  D      
Sbjct: 53  DNSKAQEYSSISWDDTLKVNG 73

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (118), Expect = 4e-07
 Identities = 28/287 (9%), Positives = 69/287 (24%), Gaps = 32/287 (11%)

Query: 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHS 405
            GH   +  L  +P    L +G+ D ++  W+ SS        +H+N + +L        
Sbjct: 10  SGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDNSKAQEY 60

Query: 406 LLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK 465
              +  D              +     ++    +       +++   +     I    + 
Sbjct: 61  SSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLN 120

Query: 466 TGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTV 525
           +      LS +   V     +       S           +      +   P    +   
Sbjct: 121 SPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAG 180

Query: 526 VYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSS------ 579
                       + + +   W     ++        +        +    A  S      
Sbjct: 181 DVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIF 240

Query: 580 ------SGKCFTTL----------CYSADGSYILAGGSSKYICMYDV 610
                   K    L           +      +++ G+   I  ++V
Sbjct: 241 IYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.5 bits (95), Expect = 3e-04
 Identities = 36/267 (13%), Positives = 77/267 (28%), Gaps = 32/267 (11%)

Query: 386 TFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQS 445
           T + H   +TAL      + L+S S DG +  W         +     S   VSL + ++
Sbjct: 8   TISGHNKGITALTV----NPLISGSYDGRIMEWSS------SSMHQDHSNLIVSLDNSKA 57

Query: 446 GEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN 505
            E       D+ ++   +         ++         V +  +  L   S+   +    
Sbjct: 58  QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV 117

Query: 506 VFEGKGSVESFPHTHDVLTVVYRPDGRQ----------------------LACSTLDGQI 543
                GS  S    +  + +      +                       ++ S  +  I
Sbjct: 118 RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYI 177

Query: 544 HFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSK 603
              D +   L+Y ++ R   +        +  A S             +   +  G    
Sbjct: 178 AAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT 237

Query: 604 YICMYDVADQVLLRRFQITHNLSLDGV 630
            I +Y V   + + +    H   ++ +
Sbjct: 238 NIFIYSVKRPMKIIKALNAHKDGVNNL 264

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 77.2 bits (188), Expect = 1e-15
 Identities = 30/237 (12%), Positives = 62/237 (26%), Gaps = 17/237 (7%)

Query: 334 WEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNA 393
            E   E+ I                P       G     + V+ +         T   + 
Sbjct: 122 IERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-FAATTENSH 180

Query: 394 VTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFT-----------TPSSRQFVSLAS 442
             A  F A++ +L   S      + D                      +P+  + V  + 
Sbjct: 181 DYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSM 240

Query: 443 D-QSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTV 501
             ++GE                    R++  L          V     A    +     +
Sbjct: 241 TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVL 300

Query: 502 RLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIE 558
             ++V   K +       +++  +    D + +     DG+I+ +     E   T+E
Sbjct: 301 LKYDVKTRKVTE----VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE 353

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 73.7 bits (179), Expect = 1e-14
 Identities = 31/378 (8%), Positives = 82/378 (21%), Gaps = 50/378 (13%)

Query: 146 ALNWSP-DSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTD 204
           A ++SP D + +   S+     +  V             L +     +       D K  
Sbjct: 7   AEDFSPLDGDLIAFVSRG-QAFIQDVS--------GTYVLKVPEPLRIRYVRRGGDTK-- 55

Query: 205 KVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAP 264
                +        F   +    GK ++  E+                       F+   
Sbjct: 56  ---VAFIHGTREGDFLGIYDYRTGKAEKFEENLGN-------------------VFAMGV 93

Query: 265 SKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFG 324
            +             ++           +       +   +    +  +           
Sbjct: 94  DRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGET 153

Query: 325 CAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCF 384
              + Q +         I             A+  DS+ L   +  +             
Sbjct: 154 DGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS 213

Query: 385 V-------TFTEHTNAVTALHFMANNHSLLSASLDGTVRA-----WDLFRYRNFRTFTTP 432
                          +      +  + +  +   D           ++            
Sbjct: 214 FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE 273

Query: 433 SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATL 492
           SS    S+           G  +   +  + +KT ++    +  +  +  L  S    T+
Sbjct: 274 SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV----TEVKNNLTDLRLSADRKTV 329

Query: 493 ASSSWDKTVRLWNVFEGK 510
                D  +  + + + +
Sbjct: 330 MVRKDDGKIYTFPLEKPE 347

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 59.5 bits (142), Expect = 6e-10
 Identities = 29/328 (8%), Positives = 74/328 (22%), Gaps = 49/328 (14%)

Query: 307 EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLAT 366
            +I                 + G  L           K + +  +V  +    + +    
Sbjct: 43  LRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVV 102

Query: 367 GADDNKVKVWTVSSGFCFVTFTEHTNAVTAL----------HFMANNHSLLSASLDGTVR 416
             D  ++    + +G   V        +T            +     H      +   + 
Sbjct: 103 ANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH 162

Query: 417 AWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSF------EIFVWSMKTGRLL 470
            +D+          T  +    + A D   + +   +  S        +  +S +     
Sbjct: 163 VYDM--EGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKP 220

Query: 471 DILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVF-------EGKGSVESFPHTHDVL 523
            ++    G  +     P + T  +  +D                + +  +          
Sbjct: 221 FVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYS 280

Query: 524 TVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKC 583
             V+         +   G +  +D    ++                              
Sbjct: 281 VPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNN------------------------ 316

Query: 584 FTTLCYSADGSYILAGGSSKYICMYDVA 611
            T L  SAD   ++       I  + + 
Sbjct: 317 LTDLRLSADRKTVMVRKDDGKIYTFPLE 344

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 58.0 bits (138), Expect = 2e-09
 Identities = 32/330 (9%), Positives = 75/330 (22%), Gaps = 44/330 (13%)

Query: 87  LHRVRFKYPVNAILFSPNGKYIAVG---TGKLVQIWRSPGFKKEVFAFELIRTLADCNDK 143
           + +V     +  +    + K   +     G  + I+                   +    
Sbjct: 36  VLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT--------GKAEKFEENLGN 87

Query: 144 VTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKT 203
           V A+    +  + +V +    +    ++     +       ++          F      
Sbjct: 88  VFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFP 147

Query: 204 DKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERR----------VKKWG 253
            K            +  +   G       T    +       + +               
Sbjct: 148 LKHGE-TDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD 206

Query: 254 LLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGL-----------------YQMPDF 296
            +  +   +  SK        G           +                        D+
Sbjct: 207 RVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY 266

Query: 297 VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLA 356
             I  L  S    +  V  E   +      K G LL ++ ++     K      ++  L 
Sbjct: 267 RMIIPLESSILIYSVPVHGEFAAYYQGAPEK-GVLLKYDVKTR----KVTEVKNNLTDLR 321

Query: 357 YSPDSQLLATGADDNKVKVWTVSSGFCFVT 386
            S D + +    DD K+  + +       T
Sbjct: 322 LSADRKTVMVRKDDGKIYTFPLEKPEDERT 351

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.5 bits (103), Expect = 4e-05
 Identities = 12/89 (13%), Positives = 25/89 (28%), Gaps = 4/89 (4%)

Query: 485 FSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDG--Q 542
           FSP +  L +        + +V      V   P    +  V    D +            
Sbjct: 10  FSPLDGDLIAFVSRGQAFIQDVSGTY--VLKVPEPLRIRYVRRGGDTKVAFIHGTREGDF 67

Query: 543 IHFWDPLNGELMYTIEGRRDISGGRLMTD 571
           +  +D   G+     E   ++    +  +
Sbjct: 68  LGIYDYRTGKAEKFEENLGNVFAMGVDRN 96

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 73.9 bits (179), Expect = 8e-15
 Identities = 41/300 (13%), Positives = 82/300 (27%), Gaps = 16/300 (5%)

Query: 132 ELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDS 191
            + +     N  +TAL+ S D   L     +  +  + +         +       H   
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG-----ISNRVFPDVHATM 57

Query: 192 VVGCFFSVDKKTDKVNRIYTI--------ARDCYMFSWGFSGNDGKIDETMEDSEPPSPG 243
           + G   +       V+    +          D          +         D +     
Sbjct: 58  ITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA 117

Query: 244 TPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLS 303
             +           +      S   A    +    V    S              +  + 
Sbjct: 118 CYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV 177

Query: 304 ISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES-YILKQQGHYFDVNCLAYSPDSQ 362
              E  + A  N     +    ++           E  +      H   V C+++SPD+ 
Sbjct: 178 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 237

Query: 363 LLATGADDNKVKVWTVSSGFC--FVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDL 420
            LATG+ DN V VW ++       +    H  +        N  +++SA  D  ++ W++
Sbjct: 238 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 67.7 bits (163), Expect = 9e-13
 Identities = 40/308 (12%), Positives = 77/308 (25%), Gaps = 62/308 (20%)

Query: 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTE-HTNAVTALHFMANNH 404
            GH   +  L+ S D + L +   +  +  W +S+G     F + H   +T +    +  
Sbjct: 9   YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT-SKG 67

Query: 405 SLLSASLDGTVRAWDL--------------------------------------FRYRNF 426
            L + S D  ++                                              + 
Sbjct: 68  DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH 127

Query: 427 RTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGR----LLDILSGHEGPVHG 482
              T        S  +  + +   A      ++ V+ +           +       V  
Sbjct: 128 GKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAF 187

Query: 483 LVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQ 542
                       S       + N FE   +     HT  V  V + PD  +LA  +LD  
Sbjct: 188 SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS 247

Query: 543 IHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSS 602
           +  W+         I                                  + + I++ G  
Sbjct: 248 VIVWNMNKPSDHPIIIKGAHAMSS------------------VNSVIWLNETTIVSAGQD 289

Query: 603 KYICMYDV 610
             I  ++V
Sbjct: 290 SNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 61.5 bits (147), Expect = 9e-11
 Identities = 13/89 (14%), Positives = 28/89 (31%)

Query: 467 GRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVV 526
           G +  +  GH   +  L  S    TL S+  +  +  W++  G  +         ++T +
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 527 YRPDGRQLACSTLDGQIHFWDPLNGELMY 555
                  L   + D  +         +  
Sbjct: 62  KTTSKGDLFTVSWDDHLKVVPAGGSGVDS 90

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 58.5 bits (139), Expect = 9e-10
 Identities = 26/292 (8%), Positives = 64/292 (21%), Gaps = 14/292 (4%)

Query: 95  PVNAILFSPNGKYIAVGTG-KLVQIWRSPGFKKEVFAFELIRTLADC-NDKVTALNWSPD 152
            + A+  S +GK +        +  W       ++      R   D     +T +  +  
Sbjct: 14  AITALSSSADGKTLFSADAEGHINSW-------DISTGISNRVFPDVHATMITGIKTTSK 66

Query: 153 SNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTI 212
            +   V   D    +      +         L        V     +       +     
Sbjct: 67  GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 126

Query: 213 ARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDY 272
                     ++ +   +    +        +     K  G    +  +           
Sbjct: 127 HGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVA 186

Query: 273 HRGLDMVVVGFSNGVFGL---YQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLG 329
                  +V        +         +               V     N  +   +   
Sbjct: 187 FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN 246

Query: 330 QLLVWEWR--SESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVS 379
            ++VW     S+  I+ +  H           +   + +   D+ +K W V 
Sbjct: 247 SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.5 bits (134), Expect = 4e-09
 Identities = 37/287 (12%), Positives = 78/287 (27%), Gaps = 7/287 (2%)

Query: 265 SKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVF- 323
             +TA         +    + G    + +   +   +       + T +       L   
Sbjct: 13  KAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTV 72

Query: 324 -GCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGF 382
                L  +       +S              LA S D  +       +           
Sbjct: 73  SWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG---K 129

Query: 383 CFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLAS 442
                  + ++  AL       ++        V           +T   P+    V+ ++
Sbjct: 130 LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN 189

Query: 443 DQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVR 502
           + +  V    +       V +       +  + H   V  + +SP N  LA+ S D +V 
Sbjct: 190 NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 249

Query: 503 LWNVFEGKGSVESFPHTH--DVLTVVYRPDGRQLACSTLDGQIHFWD 547
           +WN+ +           H    +  V   +   +  +  D  I FW+
Sbjct: 250 VWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.5 bits (108), Expect = 8e-06
 Identities = 15/67 (22%), Positives = 28/67 (41%)

Query: 386 TFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQS 445
               H  A+TAL   A+  +L SA  +G + +WD+    + R F    +     + +   
Sbjct: 7   VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 66

Query: 446 GEVICAG 452
           G++    
Sbjct: 67  GDLFTVS 73

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.4 bits (178), Expect = 2e-14
 Identities = 59/318 (18%), Positives = 108/318 (33%), Gaps = 41/318 (12%)

Query: 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHS 405
           +GH   V       +   + TGADD  ++V+   +    +  + H   V AL + A+   
Sbjct: 9   RGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGI 66

Query: 406 LLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK 465
           L+S S D TVR WD+ +      F   +S        +               + VW + 
Sbjct: 67  LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 126

Query: 466 TGRLLDILSGHEGPVHGLVFSPTNATL---------------------ASSSWDKTVRLW 504
               +                  N                         S S+D T+ +W
Sbjct: 127 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVW 186

Query: 505 NVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDIS 564
           +V + K       HT  + + +Y  + ++   +++D  I  WD  NGELMYT++G   + 
Sbjct: 187 DVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV 246

Query: 565 GGRLMTDRRSAANSSSGKCF------------------TTLCYSADGSYILAGGSSKYIC 606
           G   ++D+   + ++ G                     + +        IL  GS     
Sbjct: 247 GLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFN 306

Query: 607 MYDVADQVLLRRFQITHN 624
           +Y++    L+    +   
Sbjct: 307 IYNLRSGKLVHANILKDA 324

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.2 bits (162), Expect = 2e-12
 Identities = 34/344 (9%), Positives = 91/344 (26%), Gaps = 34/344 (9%)

Query: 101 FSPNGKYIAVGTG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVG 159
                 Y+  G   K+++++       +    + +  L+  +  V AL ++     L+ G
Sbjct: 19  LQFEDNYVITGADDKMIRVY-------DSINKKFLLQLSGHDGGVWALKYAHG-GILVSG 70

Query: 160 SKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCF--FSVDKKTDKVNRIYTIARD-- 215
           S D  VR++ +K+             +   D V      + V    D    ++ + ++  
Sbjct: 71  STDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 130

Query: 216 ------CYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTA 269
                  + +   F   +             +            +    D +     V  
Sbjct: 131 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQ 190

Query: 270 CDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLG 329
                 L        + ++   +          +I    +                  L 
Sbjct: 191 MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLR 250

Query: 330 QLLVWEWRSESYILKQQGHYFD------------VNCLAYSPDSQLLATGADDNKVKVWT 377
               +   + +    +     D                 +     +L +G  +N+  ++ 
Sbjct: 251 LSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYN 309

Query: 378 VSSGFCF-VTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDL 420
           + SG        +  + + +++F      + +   DG      L
Sbjct: 310 LRSGKLVHANILKDADQIWSVNF-KGKTLVAAVEKDGQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.7 bits (145), Expect = 3e-10
 Identities = 60/400 (15%), Positives = 120/400 (30%), Gaps = 68/400 (17%)

Query: 149 WSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNR 208
              + NY++ G+ D  +R++    K K +       L GH   V    ++          
Sbjct: 19  LQFEDNYVITGADDKMIRVYDSINK-KFLLQ-----LSGHDGGVWALKYAHG------GI 66

Query: 209 IYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVT 268
           + + + D  +  W              +S        E +  K+ +    D +       
Sbjct: 67  LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT------- 119

Query: 269 ACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKL 328
                                         +H+  + +E        E    LVF     
Sbjct: 120 ------------------------------LHVWKLPKESSVPDHGEEHDYPLVF----- 144

Query: 329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFT 388
                    +  ++   +GH   V     S    ++ +G+ DN + VW V+   C    +
Sbjct: 145 ----HTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS 198

Query: 389 EHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEV 448
            HT+ + +  +       +SAS+D T+R WDL       T    ++   +   SD+    
Sbjct: 199 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVS 258

Query: 449 ICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFE 508
             A      +  +            S H   +  +     +  +  S  +    ++N+  
Sbjct: 259 AAA------DGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRS 312

Query: 509 GKGSVESFP-HTHDVLTVVYRPDGRQLACSTLDGQIHFWD 547
           GK    +       + +V ++      A    DGQ     
Sbjct: 313 GKLVHANILKDADQIWSVNFKGKTLVAAVEK-DGQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.1 bits (128), Expect = 3e-08
 Identities = 20/174 (11%), Positives = 47/174 (27%), Gaps = 1/174 (0%)

Query: 473 LSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGR 532
           L GH   V        +  + + + DK +R+++    K  ++   H   V  + Y   G 
Sbjct: 8   LRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI 66

Query: 533 QLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSAD 592
            ++ ST      +                 +    ++  +      +  +  T   +   
Sbjct: 67  LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 126

Query: 593 GSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMD 646
               +     ++              F       +  V       N+  +G  D
Sbjct: 127 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD 180

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 72.9 bits (177), Expect = 3e-14
 Identities = 38/336 (11%), Positives = 81/336 (24%), Gaps = 26/336 (7%)

Query: 58  IAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRF--KYPVNAILFSPNGKYIAVGT--G 113
            A+     +++  +     H +++    V        K+     + +P+ +   V     
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 114 KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEK 173
             +        K   F   L     +    + +   SPD   +            +   K
Sbjct: 62  GDIYGIDLDTCK-NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 120

Query: 174 LKGI--------HTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSG 225
              +           KP         V     + D        +Y    D Y        
Sbjct: 121 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD------GSLYVAGPDIYKMDV---- 170

Query: 226 NDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSN 285
             GK    +        G     V  +   +      +     A       D        
Sbjct: 171 KTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY 230

Query: 286 GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ 345
           G   +            +   E   T + +      ++G     +L  ++ +    ++K 
Sbjct: 231 GYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL--NRLAKYDLKQRK-LIKA 287

Query: 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSG 381
                   C+A+      L  G   N + V+   + 
Sbjct: 288 ANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 323

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 72.9 bits (177), Expect = 3e-14
 Identities = 36/343 (10%), Positives = 86/343 (25%), Gaps = 43/343 (12%)

Query: 284 SNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYIL 343
           S+ V+    MPD        ++ +  T  V N     +        +       S     
Sbjct: 27  SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG- 85

Query: 344 KQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTF----TEHTNAVTALHF 399
                   +   A SPD + +    +  +            +                  
Sbjct: 86  ---EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP 142

Query: 400 MANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEI 459
           M     L+ A+ DG++         +       + +  V+L           G      +
Sbjct: 143 MPRQVYLMRAADDGSL----YVAGPDIYKMDVKTGKYTVAL---PLRNWNRKGYSAPDVL 195

Query: 460 FVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF-PH 518
           + W  ++ R                F       A++         ++  GK   + F   
Sbjct: 196 YFWPHQSPR-----HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADL 250

Query: 519 THDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANS 578
           T    T +  P         +  ++  +D    +L+                        
Sbjct: 251 TELYFTGLRSPKDPNQI-YGVLNRLAKYDLKQRKLIKAAN-------------------- 289

Query: 579 SSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQI 621
                +  + +   G  +  GG+   + +++      ++  ++
Sbjct: 290 -LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 331

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 69.0 bits (167), Expect = 6e-13
 Identities = 35/384 (9%), Positives = 91/384 (23%), Gaps = 55/384 (14%)

Query: 101 FSPNGKYIAVGT-GKLVQIWRSPGFKKEVFAFELIRTLA-DCNDKVTALNWSPDSNYLLV 158
                +Y+ V      + +        +V +  + ++              +PD+    V
Sbjct: 4   LKAGHEYMIVTNYPNNLHVV-------DVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYV 56

Query: 159 -GSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCY 217
             +    +    +       H N   +      S+     S D        +Y       
Sbjct: 57  LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDG-----KEVYATVNPTQ 111

Query: 218 MFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLD 277
             +  +     +++                                   V      R + 
Sbjct: 112 RLNDHYVVKPPRLEVFSTADG-----------------------LEAKPVRTFPMPRQVY 148

Query: 278 MVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR 337
           ++       ++        + +     +             NW   G +    L  W  +
Sbjct: 149 LMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL-------RNWNRKGYSAPDVLYFWPHQ 201

Query: 338 SESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCF-VTFTEHTNAVTA 396
           S                  +  D Q  AT           + +G      F + T     
Sbjct: 202 SPR-----HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFT 256

Query: 397 LHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS 456
                 + + +       +  +DL + +  +      +   V+      G+ +  G   +
Sbjct: 257 GLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKK--GDKLYLGGTFN 313

Query: 457 FEIFVWSMKTGRLLDILSGHEGPV 480
            ++ V++  T   +  +    G +
Sbjct: 314 -DLAVFNPDTLEKVKNIKLPGGDM 336

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 65.9 bits (159), Expect = 5e-12
 Identities = 26/364 (7%), Positives = 83/364 (22%), Gaps = 45/364 (12%)

Query: 149 WSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNR 208
                 Y++V +    + +  V        +     ++  +        + D +      
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDV-ASDTVYKS----CVMPDKFGPGTAMMAPDNR------ 52

Query: 209 IYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVT 268
                     +       D    +                 +    +     S    +V 
Sbjct: 53  --------TAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY 104

Query: 269 ACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSI--SREKITTAVFNELGNWLVFGCA 326
           A                    ++   D +    +       ++      + G+  V G  
Sbjct: 105 ATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG-- 162

Query: 327 KLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVT 386
               +   + ++  Y +      ++    +           +  ++              
Sbjct: 163 --PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHE-------------- 206

Query: 387 FTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSG 446
               +   T   F  +     +A L     + DL   +         +  + +       
Sbjct: 207 ---FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKD 263

Query: 447 EVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNV 506
                G L+   +  + +K  +L+   +  +   + + F      L        + ++N 
Sbjct: 264 PNQIYGVLN--RLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNP 320

Query: 507 FEGK 510
              +
Sbjct: 321 DTLE 324

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 56.3 bits (134), Expect = 6e-09
 Identities = 22/247 (8%), Positives = 54/247 (21%), Gaps = 22/247 (8%)

Query: 399 FMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFE 458
             A +  ++  +    +   D+     +++   P      +                  +
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 459 IFVWSMKTGRLLDIL------SGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGS 512
           I+   + T +                 ++    SP    + ++         +       
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123

Query: 513 VESF----PHTHDVLTVVYRPDGRQLACSTLDGQI-------HFWDPLNGELMYTIEGRR 561
           +E F          +     P    L  +  DG +       +  D   G+    +  R 
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183

Query: 562 DISGGRLMTDRRSAANSSSGKC-----FTTLCYSADGSYILAGGSSKYICMYDVADQVLL 616
               G    D        S +      +T   +  D                D+      
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH 243

Query: 617 RRFQITH 623
            +     
Sbjct: 244 TQEFADL 250

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 52.8 bits (125), Expect = 9e-08
 Identities = 17/154 (11%), Positives = 38/154 (24%), Gaps = 4/154 (2%)

Query: 482 GLVFSPTNATLASSSWDKTVRLWNVFEGK-GSVESFPHTHDVLTVVYRPDGRQL-ACSTL 539
           G      +  +  +++   + + +V           P      T +  PD R     +  
Sbjct: 1   GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60

Query: 540 DGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAG 599
            G I+  D    +  +                  S A S  GK                 
Sbjct: 61  YGDIYGIDLDTCKNTFHANLSSVPGEVG--RSMYSFAISPDGKEVYATVNPTQRLNDHYV 118

Query: 600 GSSKYICMYDVADQVLLRRFQITHNLSLDGVIDF 633
                + ++  AD +  +  +         ++  
Sbjct: 119 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRA 152

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 72.3 bits (176), Expect = 5e-14
 Identities = 22/332 (6%), Positives = 65/332 (19%), Gaps = 37/332 (11%)

Query: 318 GNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLA----------TG 367
            + +       G    W   +   +         ++           A           G
Sbjct: 33  RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKG 92

Query: 368 ADDNKVKVWTVSSGFCFVTFTEHTNAVTA-------LHFMANNHSLLSAS-LDGTVRAWD 419
              + V+V+   +               +       +   A++  LL             
Sbjct: 93  KRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLS 152

Query: 420 LFRYRNFRTFTTP--------SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
           +    + +   +         ++      +   S        L +               
Sbjct: 153 VPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAAS---DLAAAPAAAGI----VGAQ 205

Query: 472 ILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDG 531
                         +     + + +                     +        +R  G
Sbjct: 206 CTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG 265

Query: 532 RQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSA 591
            Q+     +        +              S       +  +   S+G     +  + 
Sbjct: 266 FQMVAKLKNTDGIMILTVEHSRSCLAAAEN-TSSVTASVGQT-SGPISNGHDSDAIIAAQ 323

Query: 592 DGSYIL--AGGSSKYICMYDVADQVLLRRFQI 621
           DG+         ++ + +YD A        ++
Sbjct: 324 DGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.9 bits (136), Expect = 5e-09
 Identities = 17/225 (7%), Positives = 47/225 (20%), Gaps = 31/225 (13%)

Query: 312 AVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYF-------DVNCLAYSPDSQLL 364
                    L+F                S     +                  S  + L 
Sbjct: 129 IGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLA 188

Query: 365 ATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYR 424
           A+           V +            +  A         + + +              
Sbjct: 189 ASDLAAAPAAAGIVGAQ----CTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGAT 244

Query: 425 NFRTFT-----------TPSSRQFVSLASDQSGEVICAGT------LDSFEIFVWSMKTG 467
                              +  Q V+   +  G +I            +      +   G
Sbjct: 245 MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG 304

Query: 468 RLLDILSGHEGPVHGLVFSPTNATL--ASSSWDKTVRLWNVFEGK 510
           +    +S +      ++ +   A+   A+S+  + + +++    +
Sbjct: 305 QTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.1 bits (134), Expect = 7e-09
 Identities = 23/292 (7%), Positives = 53/292 (18%), Gaps = 35/292 (11%)

Query: 356 AYSPDSQ-----LLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALH------FMANNH 404
                S+     L A  A   +  V     G           ++           +A+  
Sbjct: 26  GPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTS 85

Query: 405 S--LLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFV------SLASDQSGEVICAGTLDS 456
                       V  +D   +        P + +F        + +  S   +      S
Sbjct: 86  FARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS 145

Query: 457 FEIFVWSMKTGRLLDILSG-------HEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEG 509
                 S+       +                  + S   +  AS           V   
Sbjct: 146 SAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIV--- 202

Query: 510 KGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRD--ISGGR 567
            G+  +               G  +                  +   I+G      +   
Sbjct: 203 -GAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNF 261

Query: 568 LMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRF 619
                +  A   +      +             +++       +        
Sbjct: 262 RSAGFQMVAKLKNT---DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI 310

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.0 bits (100), Expect = 1e-04
 Identities = 13/235 (5%), Positives = 47/235 (20%), Gaps = 31/235 (13%)

Query: 278 MVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR 337
           ++   F +       +P      L        +    +       +  +    L   +  
Sbjct: 138 LLFFLFGSSAAAGLSVPGASDDQLTKS----ASCFHIHPGAAATHYLGSCPASLAASDLA 193

Query: 338 SESYILKQ------QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHT 391
           +                         +    L+   A          +          + 
Sbjct: 194 AAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNE 253

Query: 392 NAVTALHFMANNHSLLSASLDG-------------------TVRAWDLFRYRNFRTFTTP 432
           +   A +F +    +++   +                       +      +     +  
Sbjct: 254 SGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG 313

Query: 433 SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSP 487
                +  A D + +           + ++   + +    +   +GP   L    
Sbjct: 314 HDSDAIIAAQDGASDNYANSAGTE-VLDIYDAASDQDQSSVELDKGP-ESLSVQN 366

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.6 bits (91), Expect = 0.001
 Identities = 17/161 (10%), Positives = 34/161 (21%), Gaps = 27/161 (16%)

Query: 475 GHEGPVHGLVFSP---TNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDG 531
             +G             +     + +  T   W    G G          +   V    G
Sbjct: 17  ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSG 76

Query: 532 RQLACST----------LDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSG 581
              A ++              +  +DP+    +  IE              R +      
Sbjct: 77  SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPD---------APRFSVGPRVH 127

Query: 582 KCFTTLCYSADGSYIL-AGGSSKYICMYDVADQVLLRRFQI 621
                +   A  + +L     S       V      +  + 
Sbjct: 128 ----IIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKS 164

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.0 bits (87), Expect = 0.004
 Identities = 24/346 (6%), Positives = 60/346 (17%), Gaps = 41/346 (11%)

Query: 56  CRIAVSPDGTFLLTVDENQ-----RCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAV 110
           C                               C V L      + ++  +   +G   A+
Sbjct: 23  CDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF-LSLAVAGHSGSDFAL 81

Query: 111 GTG-----------KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVG 159
            +              V+++    F                  +V  +     S  LL  
Sbjct: 82  ASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFF 141

Query: 160 S-KDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYM 218
                A     V              L                        Y  +    +
Sbjct: 142 LFGSSAAAGLSV-------PGASDDQLTKSASCFH---IHPGAAA----THYLGSCPASL 187

Query: 219 FSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDM 278
            +   +                   + +     +  +         S +   D       
Sbjct: 188 AASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML---VWAVASSILQGDIPAAGAT 244

Query: 279 VVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRS 338
           +         G            +    +     +   + +                  +
Sbjct: 245 MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRS---CLAAAENTSSVTA 301

Query: 339 ESY-ILKQQGHYFDVNCLAYSPDSQ--LLATGADDNKVKVWTVSSG 381
                     +  D + +  + D      A  A    + ++  +S 
Sbjct: 302 SVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD 347

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 66.4 bits (160), Expect = 3e-12
 Identities = 25/335 (7%), Positives = 69/335 (20%), Gaps = 62/335 (18%)

Query: 329 GQLLVWEWRSESYI--LKQQGHYFDVNCLAYSPD-SQLLATGADDNKVKVWTVSSGFCFV 385
            +L+V +    +    +              +P      AT      +    + +G    
Sbjct: 11  DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG 70

Query: 386 TFTEHTN-----AVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSL 440
                T      ++       +  +L        +                  +      
Sbjct: 71  RIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA 130

Query: 441 ASDQSGEVICAGTLDSFEIFVWSM-------KTGRLLDILSGHEGP-------------- 479
                   + A   D  +++           + G L++                      
Sbjct: 131 FEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWN 190

Query: 480 ---------VHGLVFSPTNATLASSSWDKTVRLWNVFEGKG-SVESFPHTHDVLTVVYRP 529
                                   +++   +   ++  G+    E         +    P
Sbjct: 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP 250

Query: 530 DGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCY 589
              +   +     +  +D      +  +                          + ++  
Sbjct: 251 AKTRAFGA--YNVLESFDLEKNASIKRVP---------------------LPHSYYSVNV 287

Query: 590 SADGSYILAGGSSKYICMYDVADQVLLRRFQITHN 624
           S DGS +  GG+   +  YD        +  +  N
Sbjct: 288 STDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGN 322

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 64.1 bits (154), Expect = 2e-11
 Identities = 17/239 (7%), Positives = 49/239 (20%), Gaps = 25/239 (10%)

Query: 293 MPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDV 352
                 +   ++S +  T A++       +         +           K       +
Sbjct: 78  EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQI 137

Query: 353 NCLAYSPDSQLLATGADDNKVKVW--------------------TVSSGFCFVTFT-EHT 391
             LA++ D   L     D  V                              +        
Sbjct: 138 TMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGV 197

Query: 392 NAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICA 451
            A        +       +    +   DL                + S A + +      
Sbjct: 198 MATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG 257

Query: 452 GTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGK 510
                  +  + ++    +  +       + +  S   +T+        +  ++    +
Sbjct: 258 ---AYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 59.4 bits (142), Expect = 6e-10
 Identities = 35/342 (10%), Positives = 83/342 (24%), Gaps = 27/342 (7%)

Query: 66  FLLTVDENQRCHFINLHCHVVLHRVRFKYP---VNAILFSPNGKYIAV--GTGKLVQIWR 120
           ++L      +   I+     V   +            + +P G+         + +    
Sbjct: 3   YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62

Query: 121 SPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKE-----KLK 175
               +        + T  +    +     SPD   L +    + + L + +       L 
Sbjct: 63  LVTGE--TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120

Query: 176 GIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETME 235
              T            +    ++ D       ++Y + RD ++         G + E   
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWARDGS-----KLYGLGRDLHVMDP----EAGTLVEDKP 171

Query: 236 DSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPD 295
                +    +  V       +     A    TA             +  G+  +     
Sbjct: 172 IQSWEAETYAQPDVLAVWNQHESSGVMATPFYTAR--KDIDPADPTAYRTGLLTMDLETG 229

Query: 296 FVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCL 355
            + +  + I      +   N               L  ++    + I K+         +
Sbjct: 230 EMAMREVRIMDVFYFSTAVNPAKTRAFGAY---NVLESFDLEKNASI-KRVPLPHSYYSV 285

Query: 356 AYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTAL 397
             S D   +  G     +  +   +           NA  +L
Sbjct: 286 NVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSL 327

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 57.9 bits (138), Expect = 2e-09
 Identities = 23/315 (7%), Positives = 71/315 (22%), Gaps = 26/315 (8%)

Query: 132 ELIRTLA--DCNDKVTALNWSPDSNYLLV-GSKDLAVRLFYVKEKLKGIHTNKPFLLLGH 188
            + + +   D          +P         +K  ++    +    + +           
Sbjct: 22  AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL-VTGETLGRIDLSTPEER 80

Query: 189 RDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERR 248
             S+ G   S D KT     +        +    F                    +  + 
Sbjct: 81  VKSLFGAALSPDGKT-----LAIYESPVRLELTHFEVQPT-----RVALYDAETLSRRKA 130

Query: 249 VKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISR-- 306
            +    +    +++  SK+        +     G       +             ++   
Sbjct: 131 FEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWN 190

Query: 307 -------EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSP 359
                           +  +       + G L +     E  + + +         A +P
Sbjct: 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP 250

Query: 360 DSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWD 419
                      N ++ + +             ++  +++   +  ++      G + A+D
Sbjct: 251 AKTRAFG--AYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307

Query: 420 LFRYRNFRTFTTPSS 434
                       P +
Sbjct: 308 AETLEKKGQVDLPGN 322

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 66.4 bits (160), Expect = 4e-12
 Identities = 37/225 (16%), Positives = 59/225 (26%), Gaps = 38/225 (16%)

Query: 313 VFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNK 372
           +    G+         G   +                F +N  AYS  +  L       K
Sbjct: 163 MHCRDGSLAKVAFGTEGTPEITHTEVF-----HPEDEFLINHPAYSQKAGRLVWPTYTGK 217

Query: 373 VKVWTVSSGFCFV--TFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFT 430
           +    +SSG           T A  A  +       ++           + +   +R  T
Sbjct: 218 IHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKT 277

Query: 431 TPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNA 490
                                    S  + V   KTG  L         +  +  S    
Sbjct: 278 ------------------------ASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEK 312

Query: 491 TL--ASSSWDKTVRLWNVFEGK--GSVESFPHTHDVLTVVYRPDG 531
            L  A S+ DKT+ + +   G+   SV    H   V+T      G
Sbjct: 313 PLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTA--DMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 64.4 bits (155), Expect = 2e-11
 Identities = 33/301 (10%), Positives = 75/301 (24%), Gaps = 41/301 (13%)

Query: 356 AYSPDSQLL-----ATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSAS 410
           A +PD++ +     A  A   +  V    +G   V        +       +   +  AS
Sbjct: 8   APAPDARRVYVNDPAHFAAVTQQFVIDGEAGR--VIGMIDGGFLPNPVVADDGSFIAHAS 65

Query: 411 ----------LDGTVRAWDLFRYRNFRTFTTPSSRQFVSLA-------SDQSGEVICAGT 453
                         V  +D            P + +F+          +     ++    
Sbjct: 66  TVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF 125

Query: 454 LDSFEIFVWSMKTGRLLDILSGH-------EGPVHGLVFSPTNATLASSSWDKTVRLWNV 506
             +  + V  ++      +L            P    +     +    +   +       
Sbjct: 126 SPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT- 184

Query: 507 FEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELM----YTIEGRRD 562
                 V        +    Y     +L   T  G+IH  D  +G+             +
Sbjct: 185 ---HTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAE 241

Query: 563 ISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQIT 622
            + G      +  A   +                    +S+++ + D      L +F++ 
Sbjct: 242 RADGWRPGGWQQVAYHRALDRIY--LLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG 299

Query: 623 H 623
           H
Sbjct: 300 H 300

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.9 bits (125), Expect = 8e-08
 Identities = 36/360 (10%), Positives = 86/360 (23%), Gaps = 39/360 (10%)

Query: 59  AVSPDGTFLLTVDENQRC-----HFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTG 113
           A +PD   +   D            I+     V+  +   + +   + + +G +IA  + 
Sbjct: 8   APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF-LPNPVVADDGSFIAHAST 66

Query: 114 -----------KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKD 162
                        V+++                            + +PD   LL     
Sbjct: 67  VFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS 126

Query: 163 LAVRLFYVKE---KLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMF 219
            A  +  V       K +        +             D    KV        +    
Sbjct: 127 PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT 186

Query: 220 SWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMV 279
                 ++  I+       P       R V      +      +            L   
Sbjct: 187 EVFHPEDEFLINH------PAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEA 240

Query: 280 VVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE 339
                                 ++  R      +  +  +      A    ++V + ++ 
Sbjct: 241 ERADGW---------RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTAS-RFVVVLDAKTG 290

Query: 340 SYILKQQGHYFDVNCLAYSPDSQ--LLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTAL 397
             + K +  + +++ +  S D +  L A    D  + +    SG    +  +  +    +
Sbjct: 291 ERLAKFEMGH-EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVI 349

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.7 bits (122), Expect = 2e-07
 Identities = 18/202 (8%), Positives = 47/202 (23%), Gaps = 22/202 (10%)

Query: 458 EIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSW----------DKTVRLWNVF 507
           + FV   + GR++ ++ G   P    V +   + +A +S              V +++  
Sbjct: 29  QQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 86

Query: 508 EGKGSVESFPHTHDVLTVVYRPDGRQL---------ACSTLDGQIHFWDPLNGELMYTIE 558
               + +          V   P    L            +    +   D         ++
Sbjct: 87  TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD 146

Query: 559 GRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRR 618
                             +   G        +     I           + +      ++
Sbjct: 147 VPDC-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK 205

Query: 619 FQITHNLSLDGVIDFLNSKNMT 640
                  +  G I  ++  +  
Sbjct: 206 AGRLVWPTYTGKIHQIDLSSGD 227

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.6 bits (158), Expect = 7e-12
 Identities = 35/325 (10%), Positives = 84/325 (25%), Gaps = 57/325 (17%)

Query: 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFT------------EHTNA 393
           + H  D+  ++         + + D  +KVW                         H + 
Sbjct: 11  KAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68

Query: 394 VTALHFMANNHSLL-SASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVIC-- 450
           + A+   A    L+ + S  G +  + + R    +           S     S   +   
Sbjct: 69  LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128

Query: 451 -----------AGTLDSFEIFVWSM------------------KTGRLLDILSGHEGPVH 481
                        T      ++W                    +    ++          
Sbjct: 129 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFAT 188

Query: 482 GLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF------PHTHDVLTVVYRPDGRQLA 535
            +  S     +A+   + TV++  +   +             +++ + +V + P G  LA
Sbjct: 189 SVDISE-RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA 247

Query: 536 CSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSY 595
            +              E    I      +     +    A +S       +L ++  G  
Sbjct: 248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW----VMSLSFNDSGET 303

Query: 596 ILAGGSSKYICMYDVADQVLLRRFQ 620
           + + G    +  +DV  +  +    
Sbjct: 304 LCSAGWDGKLRFWDVKTKERITTLN 328

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.3 bits (157), Expect = 1e-11
 Identities = 43/417 (10%), Positives = 114/417 (27%), Gaps = 94/417 (22%)

Query: 141 NDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSV--VGCFFS 198
           +  + +++     ++ +  S D  ++++  K        +K +    H+  +  V    +
Sbjct: 14  DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 71

Query: 199 VDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKD 258
           +++   ++  + T +    +  +  +  D      +   +     +  ++   W L    
Sbjct: 72  IERDAFELCLVATTSFSGDLLFYRITREDETK--KVIFEKLDLLDSDMKKHSFWAL---- 125

Query: 259 DFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELG 318
                  K  A +       +V     G            I       ++  +   N   
Sbjct: 126 -------KWGASNDRLLSHRLVATDVKGT---------TYIWKFHPFADESNSLTLNWSP 169

Query: 319 NWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTV 378
              + G                 +            +  S    L+ATG ++  V++  +
Sbjct: 170 TLELQGT----------------VESPMTPSQFATSVDISERG-LIATGFNNGTVQISEL 212

Query: 379 SSGFCFV------TFTEHTNAVTALHFMANNHSLLSASLDGTV---RAWDLFRYRNFRTF 429
           S+           +   ++N++ ++ F      L  A    +      ++        + 
Sbjct: 213 STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSL 272

Query: 430 TTPS-SRQFVSLASDQSGEV----------ICAGTLDSFEIFVWSMKTGRLLDILSGHEG 478
           + P+ S Q        S  V                   ++  W +KT   +  L+ H  
Sbjct: 273 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD 332

Query: 479 PV----HGLVFSP---------------------------TNATLASSSWDKTVRLW 504
            +      L                                N +L     D+++R +
Sbjct: 333 DIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.4 bits (147), Expect = 2e-10
 Identities = 36/376 (9%), Positives = 92/376 (24%), Gaps = 31/376 (8%)

Query: 95  PVNAILFSPNGKYIAVGTG-KLVQIWRSPGFKKEVFAFELIRTLAD------CNDKVTAL 147
            + ++    +  +    +G   +++W +     E    +              +      
Sbjct: 16  DIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIE 73

Query: 148 NWSPDSNYLLVGSKDLAVRLFYVK----EKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKT 203
             + +   +   S    +  + +      K               + S     +      
Sbjct: 74  RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR 133

Query: 204 DKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEP--PSPGTPERRVKKWGLLRKDDFS 261
              +R+         + W F     + +    +  P     GT E  +         D S
Sbjct: 134 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS 193

Query: 262 QAPSKVTACD-----YHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVF-N 315
           +     T  +           +  +        +    + +     S     +  A   N
Sbjct: 194 ERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN 253

Query: 316 ELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFD--VNCLAYSPDSQLLATGADDNKV 373
             G   ++      ++      + S             V  L+++   + L +   D K+
Sbjct: 254 SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL 313

Query: 374 KVWTVSSGFCFVTFTEHTNAV----TALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTF 429
           + W V +     T   H + +      L    +  SL    +         +R       
Sbjct: 314 RFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMG--- 370

Query: 430 TTPSSRQFVSLASDQS 445
               +     +  D+S
Sbjct: 371 -ADLNESLCCVCLDRS 385

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.3 bits (144), Expect = 4e-10
 Identities = 27/252 (10%), Positives = 66/252 (26%), Gaps = 57/252 (22%)

Query: 372 KVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTT 431
           KV + T ++G        H   + ++     N   +S S DG ++ WD       +    
Sbjct: 1   KVFIATANAG------KAHDADIFSVSA--CNSFTVSCSGDGYLKVWDN------KLLDN 46

Query: 432 PSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNAT 491
            + +            +     L + E                           +     
Sbjct: 47  ENPKDKSYSHFVHKSGLHHVDVLQAIE-------------------------RDAFELCL 81

Query: 492 LASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDG---------------RQLAC 536
           +A++S+   +  + +     + +      D+L    +                   +L  
Sbjct: 82  VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVA 141

Query: 537 STLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYI 596
           + + G  + W                     L       +  +  +  T++  S  G  I
Sbjct: 142 TDVKGTTYIWKFHPFADESNSLTLN--WSPTLELQGTVESPMTPSQFATSVDISERG-LI 198

Query: 597 LAGGSSKYICMY 608
             G ++  + + 
Sbjct: 199 ATGFNNGTVQIS 210

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.5 bits (142), Expect = 7e-10
 Identities = 17/166 (10%), Positives = 46/166 (27%), Gaps = 26/166 (15%)

Query: 458 EIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKG------ 511
           ++F+ +   G+       H+  +  +    +     S S D  +++W+            
Sbjct: 1   KVFIATANAGK------AHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDK 52

Query: 512 SVESFPHTHDVLTVVYR-------PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDIS 564
           S   F H   +  V           +   +A ++  G + F+     +    +   +   
Sbjct: 53  SYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDL 112

Query: 565 GGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV 610
                 D     +S     +           ++A        ++  
Sbjct: 113 -----LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 153

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.7 bits (140), Expect = 1e-09
 Identities = 35/303 (11%), Positives = 78/303 (25%), Gaps = 68/303 (22%)

Query: 350 FDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHF---------- 399
                   + +  L+AT +    +  + ++              +               
Sbjct: 68  VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW 127

Query: 400 -----MANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEV------ 448
                   +H L++  + GT   W    + +     T +    + L       +      
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA 187

Query: 449 ----------ICAGTLDSF-----EIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLA 493
                     I  G  +          +  +        +  +   +  + FSP  + LA
Sbjct: 188 TSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA 247

Query: 494 SSSWDKTVRLWNVFE----------------GKGSVESFPHTHDVLTVVYRPDGRQLACS 537
            +    +     ++E                 + S+  F H+  V+++ +   G  L  +
Sbjct: 248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA 307

Query: 538 TLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYIL 597
             DG++ FWD    E + T+    D                        L     G  + 
Sbjct: 308 GWDGKLRFWDVKTKERITTLNMHCD----------------DIEIEEDILAVDEHGDSLA 351

Query: 598 AGG 600
             G
Sbjct: 352 EPG 354

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 63.7 bits (154), Expect = 4e-11
 Identities = 24/183 (13%), Positives = 49/183 (26%), Gaps = 17/183 (9%)

Query: 455 DSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVE 514
           D+ +I +    T  +  +L       H    S +   L     D  V + +++  + +  
Sbjct: 40  DAGQIALIDGSTYEIKTVLDTGYAV-HISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV 98

Query: 515 SF-----PHTHDVLTVVYRPDGRQL-ACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRL 568
           +             + +   + +   A +    Q    D    E       R        
Sbjct: 99  AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG------- 151

Query: 569 MTDRRSAANSSSGKCFTTLCYSADGSY-ILAGGSSKYICMYDVADQVLLRRFQITHNLSL 627
           MT      +            S      I+    +  I + D  D   L+  +I+    L
Sbjct: 152 MTYDEQEYHPEPRVAAIL--ASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFL 209

Query: 628 DGV 630
              
Sbjct: 210 HDG 212

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 63.3 bits (153), Expect = 5e-11
 Identities = 45/470 (9%), Positives = 114/470 (24%), Gaps = 69/470 (14%)

Query: 35  SVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKY 94
            + ++ +S  V +  E            +  F +T+ +  +   I+   + +   +   Y
Sbjct: 3   GMKEMRESWKVHVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY 62

Query: 95  PVNAILFSPNGKYIAV-GTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDS 153
            V+    S +G+Y+ V G    V +      +    A   I+  ++     T+     + 
Sbjct: 63  AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE--IKIGSEARSIETSKMEGWED 120

Query: 154 NYLLVGSKD------LAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVN 207
            Y + G+        +       K+                   V     S  +      
Sbjct: 121 KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE---- 176

Query: 208 RIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKV 267
            I  +     +    ++  +      +        G                        
Sbjct: 177 FIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDG------------------------ 212

Query: 268 TACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK 327
              D      +      N +  +        +  +  +  +              FG   
Sbjct: 213 -GLDGSHRYFITAANARNKLVVIDT--KEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVW 269

Query: 328 ----LGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFC 383
               +G   V    ++        + + +     +     L      N   ++  +    
Sbjct: 270 ATSHMGDDSVALIGTDPEGHP--DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDA---- 323

Query: 384 FVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASD 443
             T         ++    +  ++     D   +   +          T    + V    +
Sbjct: 324 --TLNPEAEISGSVAVF-DIKAMTGDGSDPEFKTLPIAE----WAGITEGQPRVVQGEFN 376

Query: 444 QSGE-----VICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPT 488
           + G      V      +S  + V   KT  L  ++          + +PT
Sbjct: 377 KDGTEVWFSVWNGKDQES-ALVVVDDKTLELKHVIKDER------LVTPT 419

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.3 bits (122), Expect = 3e-07
 Identities = 20/237 (8%), Positives = 51/237 (21%), Gaps = 18/237 (7%)

Query: 329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFT 388
           GQ+ + +  +          Y  V+    S   + L     D KV +  +          
Sbjct: 42  GQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE 100

Query: 389 -----EHTNAVTALHFMANNHSLL-SASLDGTVRAWDL----------FRYRNFRTFTTP 432
                E  +  T+      +   +  A         D            R   +      
Sbjct: 101 IKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH 160

Query: 433 SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPV-HGLVFSPTNAT 491
              +  ++ +            ++ +I +        L           H      ++  
Sbjct: 161 PEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRY 220

Query: 492 LASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDP 548
             +++  +   +    +    V                +        +    H  D 
Sbjct: 221 FITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDD 277

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.5 bits (112), Expect = 5e-06
 Identities = 30/242 (12%), Positives = 59/242 (24%), Gaps = 24/242 (9%)

Query: 335 EW-----RSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTE 389
           E+     R    +              +  ++    T  D  ++ +   S+         
Sbjct: 1   EFGMKEMRESWKVHVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDT 60

Query: 390 HTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTP---SSRQFV-SLASDQS 445
              AV      A+   L     DG V   DL+               +R    S      
Sbjct: 61  G-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWE 119

Query: 446 GEVICAGTLDSFEIFVWSMKTGRLLDILS-----------GHEGPVHGLVFSPTNATLAS 494
            +   AG     +  +   +T     I S             E  V  ++ S        
Sbjct: 120 DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 179

Query: 495 SSWD-KTVRLWNVFEGKGSVESFPHTHDVL-TVVYRPDGRQ-LACSTLDGQIHFWDPLNG 551
           +  +   + L +  +      +       L         R  +  +    ++   D   G
Sbjct: 180 NVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 239

Query: 552 EL 553
           +L
Sbjct: 240 KL 241

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.9 bits (108), Expect = 1e-05
 Identities = 43/393 (10%), Positives = 95/393 (24%), Gaps = 33/393 (8%)

Query: 179 TNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSE 238
           T +   +L    +V     S   +      ++ I RD  +        +      ++   
Sbjct: 51  TYEIKTVLDTGYAVHISRLSASGR-----YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS 105

Query: 239 PPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVC 298
                          +              A  Y     +++ G +     +        
Sbjct: 106 EA-----------RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY 154

Query: 299 IHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFD--VNCLA 356
                    ++   + +      +    + G++L+ +  ++   LK      +  ++   
Sbjct: 155 DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD-YTDLNNLKTTEISAERFLHDGG 213

Query: 357 YSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVR 416
                +   T A+     V   +     V   +           AN        +  T  
Sbjct: 214 LDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSH 273

Query: 417 AWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGH 476
             D     +               A          G   S  I          +D     
Sbjct: 274 MGD-----DSVALIGTDPEGHPDNAWKILDSFPALGG-GSLFIKTHPNSQYLYVDATLNP 327

Query: 477 EGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLAC 536
           E  + G V       +     D   +   + E  G  E       V+   +  DG ++  
Sbjct: 328 EAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITE---GQPRVVQGEFNKDGTEVWF 384

Query: 537 S-----TLDGQIHFWDPLNGELMYTIEGRRDIS 564
           S       +  +   D    EL + I+  R ++
Sbjct: 385 SVWNGKDQESALVVVDDKTLELKHVIKDERLVT 417

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 58.8 bits (141), Expect = 1e-09
 Identities = 36/299 (12%), Positives = 73/299 (24%), Gaps = 27/299 (9%)

Query: 455 DSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSV- 513
           D+ +I +    + +++ ++       H    S +   L     D  + + +++  + +  
Sbjct: 40  DAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV 98

Query: 514 ----ESFPHTHDVLTVVYRPDGRQL-ACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRL 568
                         +     + R   A +    Q    D    E    +  R      + 
Sbjct: 99  AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT 158

Query: 569 MTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSL- 627
                  A   +         +           +  + + +  D   L    I     L 
Sbjct: 159 YHPEPRVAAIIASHEHPEFIVNVKE--------TGKVLLVNYKDIDNLTVTSIGAAPFLA 210

Query: 628 DGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKC 687
           DG  D  +   MT A   + +   +S           GK     PG   N   P      
Sbjct: 211 DGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK--TPHPGRGANFVHPKYGPVW 268

Query: 688 LKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDV-----TPE----AVDAALNED 737
                   +     T+           + +              P+     VD   N D
Sbjct: 269 STSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPD 327

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 50.7 bits (120), Expect = 4e-07
 Identities = 42/238 (17%), Positives = 62/238 (26%), Gaps = 16/238 (6%)

Query: 355 LAYSPDSQ--LLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412
                D       T  D  ++ +    S            AV      A+   LL    D
Sbjct: 24  QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRD 82

Query: 413 GTVRAWDLFRYRNFRTFTTPS---SRQFV-SLASDQSGEVICAGTLDSFEIFVWSMKTGR 468
             +   DL+     +         +R    S           AG     +  +   +T  
Sbjct: 83  ARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 142

Query: 469 LLDILSGHEGPVHGLVFSPTNAT-LASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVY 527
              I+S     V    + P        +S +    + NV E    +       D LTV  
Sbjct: 143 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTS 202

Query: 528 RPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFT 585
                 LA    DG    WD  +     T     +        DRR +A    GK   
Sbjct: 203 IGAAPFLA----DG---GWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPH 252

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 50.0 bits (118), Expect = 7e-07
 Identities = 33/360 (9%), Positives = 94/360 (26%), Gaps = 33/360 (9%)

Query: 35  SVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKY 94
            + ++ +S  V +  E         +     F +T+ +  +   ++     ++  +   Y
Sbjct: 3   GMPEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY 62

Query: 95  PVNAILFSPNGKYIAV-GTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDS 153
            V+    S +G+Y+ V G    + +      +    A   I+   +     ++     + 
Sbjct: 63  AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE--IKIGIEARSVESSKFKGYED 120

Query: 154 NYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIA 213
            Y + G+               G       ++     +V    +  + +   +      +
Sbjct: 121 RYTIAGAYWPPQFAIM-----DGETLEPKQIVSTRGMTVDTQTYHPEPRVAAI----IAS 171

Query: 214 RDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLL-----RKDDFSQAPSKVT 268
            +   F          +    +D +  +  +                R    +   S   
Sbjct: 172 HEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKV 231

Query: 269 ACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKL 328
           A    +   +  +          +  +FV           + +      G+  + G    
Sbjct: 232 AVIDSKDRRLSALVDVGKTPHPGRGANFVHPK-----YGPVWSTSHLGDGSISLIGTDPK 286

Query: 329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSP-------DSQLLATGADDNKVKVWTVSSG 381
                    +   + + QG       +   P       D+           V V+ + + 
Sbjct: 287 N----HPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL 342

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 49.2 bits (116), Expect = 1e-06
 Identities = 42/349 (12%), Positives = 85/349 (24%), Gaps = 29/349 (8%)

Query: 406 LLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK 465
            ++    G +   D    +  +   T  +     +++   G  +     D+  I +  + 
Sbjct: 35  SVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSAS--GRYLLVIGRDA-RIDMIDLW 91

Query: 466 TGRLLDIL-----SGHEGPVHGLVFSPTNATLASSS-WDKTVRLWNVFEGKGSVESFPHT 519
                 +                     +    + + W     + +    +         
Sbjct: 92  AKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG 151

Query: 520 HDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSS 579
             V T  Y P+ R  A         F   +       +   +DI       D  +  +  
Sbjct: 152 MTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDI-------DNLTVTSIG 204

Query: 580 SGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNM 639
           +        + +   Y +   ++        +    L            G          
Sbjct: 205 AAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKY 264

Query: 640 TEAGPMDLIDDDN---SDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRN 696
                   + D +     T+     Q   K   +L G           +  +K  P   +
Sbjct: 265 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG-------QGGGSLFIKTHPKSSH 317

Query: 697 FVAATTEGVLVYSIDESFIFDPTDLDID--VTPEAVDAALNEDQPKRAL 743
               TT            +FD  +LD    V P A  A L E   KR +
Sbjct: 318 LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGE-GAKRVV 365

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 47.3 bits (111), Expect = 6e-06
 Identities = 61/396 (15%), Positives = 104/396 (26%), Gaps = 41/396 (10%)

Query: 31  GNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRV 90
             ++++ D   SK +   +++   +    +S  G +LL +  + R   I+L         
Sbjct: 41  AGQIALVDG-DSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA 99

Query: 91  RFKYPVNA------ILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKV 144
             K  + A             +Y   G     Q     G   E                 
Sbjct: 100 EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP----KQIVSTRGMTVD 155

Query: 145 TALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTD 204
           T           ++ S +    +  VKE  K +  N   +      S+    F  D   D
Sbjct: 156 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWD 215

Query: 205 KVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPER-RVKKWGLLRKDDFSQA 263
             +R +  A +           D ++   ++  + P PG        K+G +        
Sbjct: 216 SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGD 275

Query: 264 PSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWL-- 321
            S        +            + G      F+  H    S        FN        
Sbjct: 276 GSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTH--PKSSHLYVDTTFNPDARISQS 333

Query: 322 --VFGCAKLGQ----LLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLL---------AT 366
             VF    L      L + EW       K       V    Y+     +          +
Sbjct: 334 VAVFDLKNLDAKYQVLPIAEWADLGEGAK------RVVQPEYNKRGDEVWFSVWNGKNDS 387

Query: 367 GA----DDNKVKVWTVSSGFCFVTFTEHTNAVTALH 398
            A    DD  +K+  V      +T T   N     H
Sbjct: 388 SALVVVDDKTLKLKAVVKDPRLITPTGKFNVYNTQH 423

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 45.7 bits (107), Expect = 2e-05
 Identities = 27/235 (11%), Positives = 66/235 (28%), Gaps = 11/235 (4%)

Query: 329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFT 388
           GQ+ + +  S+  +      Y  V+    S   + L     D ++ +  + +        
Sbjct: 42  GQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE 100

Query: 389 -----EHTNAVTALHFMANNHSLLSAS-LDGTVRAWDLFRYRNFRTFTTPSSRQFVSLAS 442
                E  +  ++      +   ++ +         D       +  +T           
Sbjct: 101 IKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH 160

Query: 443 DQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVR 502
            +        + +  E  V   +TG++L + +  +     +        LA   WD + R
Sbjct: 161 PEPRVAAIIASHEHPEFIVNVKETGKVLLV-NYKDIDNLTVTSIGAAPFLADGGWDSSHR 219

Query: 503 LWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTI 557
            +       +  +   + D         G+           +F  P  G +  T 
Sbjct: 220 YFMTAANNSNKVAVIDSKDRRLSALVDVGK---TPHPGRGANFVHPKYGPVWSTS 271

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 36/293 (12%), Positives = 73/293 (24%), Gaps = 20/293 (6%)

Query: 333 VWEWRSESYI--LKQQGHYFDVNCLAYSPDSQLL-ATGADDNKVKVWTVSSGFCFVTFTE 389
           VW    E  +   +       V  +  SPD + L      + +V  + ++     +TF  
Sbjct: 18  VWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA 77

Query: 390 HTNAVTALHFMA----NNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFV-SLASDQ 444
            +    +L  ++         + +   G V    L                   S     
Sbjct: 78  ESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP 137

Query: 445 SGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVH------GLVFSPTNATLASSSWD 498
               +    L    I ++++     L      E           +VF P        +  
Sbjct: 138 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL 197

Query: 499 KTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIE 558
            +       +          T D++   +    R  A   +          +        
Sbjct: 198 NSSVDVWELKDPHGNIECVQTLDMMPENFSDT-RWAADIHITPDGRHLYACDRTASLITV 256

Query: 559 GRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGS-SKYICMYDV 610
                 G  L           +            G Y++A G  S +I +Y++
Sbjct: 257 FSVSEDGSVL----SKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI 305

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 30/283 (10%), Positives = 68/283 (24%), Gaps = 9/283 (3%)

Query: 358 SPDSQLLATGADDNKVKVWTVSS--GFCFVTFTEHTNAVTALHFMANNHSLL-SASLDGT 414
           S    +     +  ++ VW ++           +    V  +    +   L      +  
Sbjct: 1   SLKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFR 60

Query: 415 VRAWDLFRYRNFRTF----TTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLL 470
           V A+ +       TF      P S   +S         + +    +  +          +
Sbjct: 61  VLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV 120

Query: 471 DILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPD 530
             +       H    SP N T              +F               +T V    
Sbjct: 121 VDVVEGLDGCHSANISPDNRT--LWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAG 178

Query: 531 GRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYS 590
            R +     +   +  + LN  +          +   + T      N S  +    +  +
Sbjct: 179 PRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT 238

Query: 591 ADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDF 633
            DG ++ A   +  +       +      +     +      F
Sbjct: 239 PDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGF 281

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (98), Expect = 2e-04
 Identities = 30/299 (10%), Positives = 73/299 (24%), Gaps = 28/299 (9%)

Query: 86  VLHRVRFKYPVNAILFSPNGKYIAVGTG--KLVQIWRSPGFKKEVFAFELIRTLADCNDK 143
           +   V     V  ++ SP+ +Y+ VG      V  +R       +               
Sbjct: 29  LTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL----PGS 84

Query: 144 VTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKT 203
           +T ++      ++ VGS +                           D +      V +  
Sbjct: 85  LTHISTDHQGQFVFVGSYNAGNVSVTR-----------------LEDGLPVGVVDVVEGL 127

Query: 204 DKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQA 263
           D  +       +  ++      +   +    +D    +    E    +    R   F   
Sbjct: 128 DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN 187

Query: 264 PSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVF 323
                  +       V                 +     S +R      +  +  +    
Sbjct: 188 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYAC 247

Query: 324 GCAKLGQLLVWEWRSESYILKQQGHY---FDVNCLAYSPDSQ-LLATGADDNKVKVWTV 378
                  + V+    +  +L ++G                 + L+A G   + + V+ +
Sbjct: 248 DRTA-SLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI 305

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 46.8 bits (109), Expect = 6e-06
 Identities = 31/297 (10%), Positives = 73/297 (24%), Gaps = 28/297 (9%)

Query: 329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSPD-SQLLATGADDNKVKVWTVSSGFCFVTF 387
             + V +  S            +      SPD +++    A  N V +   ++     T 
Sbjct: 12  DNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV 70

Query: 388 TEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGE 447
              ++              ++     T+   D        T  T  S   +  A    G+
Sbjct: 71  PAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGL--ALSPDGK 128

Query: 448 VICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVF 507
            +         + V +  T  +++ +S    P    V         ++    ++ + +  
Sbjct: 129 KLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTV 188

Query: 508 EGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQ--IHFWDPLNGELMYTIEGRRDISG 565
                             V     +    +       +   D    ++   I    D +G
Sbjct: 189 TNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAG 248

Query: 566 GRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGS-SKYICMYDVADQVLLRRFQI 621
                                +  + DG  +    S    + + D A   +     +
Sbjct: 249 ---------------------IAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 43.7 bits (101), Expect = 5e-05
 Identities = 28/283 (9%), Positives = 67/283 (23%), Gaps = 19/283 (6%)

Query: 107 YIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLV-GSKDLAV 165
           YIA      + +        +V + ++  T+            SPD   + V  +    V
Sbjct: 5   YIANSESDNISVI-------DVTSNKVTATI-PVGSNPMGAVISPDGTKVYVANAHSNDV 56

Query: 166 RLF-----YVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFS 220
            +       V   +    + +   +      V     +    +       T+A       
Sbjct: 57  SIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK 116

Query: 221 WGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVV 280
                      + +  +                ++      ++P  +           V 
Sbjct: 117 SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGT---KVY 173

Query: 281 VGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES 340
           V   + +           +          +    N  G              V    + +
Sbjct: 174 VANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT 233

Query: 341 Y-ILKQQGHYFDVNCLAYSPDSQ-LLATGADDNKVKVWTVSSG 381
             I  +     D   +A +PD + +    +  N V V   ++ 
Sbjct: 234 NKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN 276

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 470

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 43.6 bits (101), Expect = 9e-05
 Identities = 37/446 (8%), Positives = 107/446 (23%), Gaps = 36/446 (8%)

Query: 92  FKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSP 151
           ++  + ++ +  + +Y+      ++ ++ +      VF      T  +    +   + SP
Sbjct: 15  YRLKLYSLRWISDHEYLYKQENNIL-VFNAEYGNSSVFLEN--STFDEFGHSINDYSISP 71

Query: 152 DSNYLLVGS--KDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRI 209
           D  ++L+           +     +  ++  +        ++     +S           
Sbjct: 72  DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGH------K 125

Query: 210 YTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTA 269
                +  ++                  +    G  +   ++           +P+    
Sbjct: 126 LAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFL 185

Query: 270 CDYHRGLDMV-VVGFSNGVFGLYQMPDFVCIHLLSISRE--KITTAVFNELGNWLVFGCA 326
                    V ++ +S       Q P  V +           +   V N      V    
Sbjct: 186 AYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT 245

Query: 327 KLGQLLVWEWRSESYILK----QQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGF 382
            +            + L            +  L    +  ++     D     W      
Sbjct: 246 SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVAR 305

Query: 383 CFVTFTE------HTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQ 436
             +  +          +        N+   + ++ +G          +   TF T  + +
Sbjct: 306 QHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWE 365

Query: 437 FVSLASDQSGEVICAGTLDS---FEIFVWSM------KTGRLLDILSGHEGPVHGLVFSP 487
            + + +  S  +               ++ +      K   L   L+      + + FS 
Sbjct: 366 VIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSK 425

Query: 488 TNATLA---SSSWDKTVRLWNVFEGK 510
                    S        L +    K
Sbjct: 426 EAKYYQLRCSGPGLPLYTLHSSVNDK 451

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 40.7 bits (95), Expect = 7e-04
 Identities = 30/190 (15%), Positives = 54/190 (28%), Gaps = 20/190 (10%)

Query: 42  SKTVTLPVESSSNICRIAVSPDGTFLLTVDEN-QRCHFINLHCHVVLHRVRFKYPVNAIL 100
           +  V   V    N+        G +  +   N +R   +          V          
Sbjct: 165 TMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAA 224

Query: 101 FSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLV-G 159
               G +  +G  K+  +      +         R +         LN SPD  Y +  G
Sbjct: 225 AVKAGNFKTIGDSKVPVVDGRGESE-------FTRYIP-VPKNPHGLNTSPDGKYFIANG 276

Query: 160 SKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVG----CFFSVDKKTDKVNRIYTIAR- 214
                V +  + +KL  +  +K    +  RD++V         +    D     YT    
Sbjct: 277 KLSPTVSVIAI-DKLDDLFEDK----IELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFI 331

Query: 215 DCYMFSWGFS 224
           D  +  W  +
Sbjct: 332 DSQVCKWNIA 341

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	860
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.91
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.91
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.9
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.88
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.87
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.87
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.85
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.84
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.84
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.82
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.79
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.72
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.66
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.66
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.64
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.56
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.54
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.37
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.36
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.32
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.31
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.29
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.25
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.21
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.2
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.18
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.15
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.14
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.14
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.11
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.04
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.98
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.91
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.79
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.76
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.73
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.61
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.32
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.29
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.24
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.23
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.21
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.2
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.16
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.16
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.15
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	98.09
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	98.06
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.04
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.98
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.98
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.96
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.96
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.92
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.85
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.77
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.7
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.58
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	97.0
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.88
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.73
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.35
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.71
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.13
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.87
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.06
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	92.31
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	91.64
d1k8kg_	143	Arp2/3 complex 16 kDa subunit ARPC5 {Cow (Bos taur	89.89
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	88.75
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	86.9
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	86.48
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	84.27
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	80.44

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-38  Score=324.59  Aligned_cols=322  Identities=12%  Similarity=0.144  Sum_probs=267.6

Q ss_pred             eEEEEcCCCCEEEEEcCCCcEEEEE-cccCeEEEEeecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEE
Q 038577           56 CRIAVSPDGTFLLTVDENQRCHFIN-LHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELI  134 (860)
Q Consensus        56 ~~va~spdg~~la~~~~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~  134 (860)
                      ..+..+++|+..........+..-. ....+.++.+.|...|.+++|+|+|++||+|+|+.|+|||+.++.... .. ..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~-~~-~~   90 (337)
T d1gxra_          13 YSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKS-PV-SQ   90 (337)
T ss_dssp             CEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCS-CS-EE
T ss_pred             ccccCCCCCCEEeeccCCcceecCCCCCCceEEEECCCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccc-ee-EE
Confidence            3456677776544433222211000 123466777889999999999999999999999999999998764321 11 23


Q ss_pred             EEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcC
Q 038577          135 RTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR  214 (860)
Q Consensus       135 ~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~  214 (860)
                      ....+|.+.|.+++|+||+++|++++.||.|++||+... ..   .....+.+|...+..+.|+|++.     ++++++.
T Consensus        91 ~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~-~~---~~~~~~~~~~~~v~~~~~~~~~~-----~l~s~~~  161 (337)
T d1gxra_          91 LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP-TP---RIKAELTSSAPACYALAISPDSK-----VCFSCCS  161 (337)
T ss_dssp             EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC------EEEEEEECSSSCEEEEEECTTSS-----EEEEEET
T ss_pred             eeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccc-cc---ccccccccccccccccccccccc-----ccccccc
Confidence            455689999999999999999999999999999998765 22   34567789999999999999999     9999999


Q ss_pred             CccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECC
Q 038577          215 DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMP  294 (860)
Q Consensus       215 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~  294 (860)
                      |+.+++|++.++..                            ......+...+.+++|++++..+++++.+|.+++||+.
T Consensus       162 d~~i~~~~~~~~~~----------------------------~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~  213 (337)
T d1gxra_         162 DGNIAVWDLHNQTL----------------------------VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR  213 (337)
T ss_dssp             TSCEEEEETTTTEE----------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             cccccccccccccc----------------------------cccccccccccccccccccccccccccccccccccccc
Confidence            99999999887421                            22334577889999999999999999999999999999


Q ss_pred             CceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 038577          295 DFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVK  374 (860)
Q Consensus       295 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  374 (860)
                      +++.+..+. +...+.+++|+|+++.+++++.+ +.+++||+.++... ....|...|.+++|+|++++|++++.||.|+
T Consensus       214 ~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~  290 (337)
T d1gxra_         214 EGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMES-SNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLN  290 (337)
T ss_dssp             TTEEEEEEE-CSSCEEEEEECTTSSEEEEEETT-SCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             cceeecccc-cccceEEEEEcccccccceeccc-cccccccccccccc-cccccccccceEEECCCCCEEEEEeCCCeEE
Confidence            998887664 56789999999999999988776 99999999988765 4467899999999999999999999999999


Q ss_pred             EEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 038577          375 VWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDL  420 (860)
Q Consensus       375 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~  420 (860)
                      +||+.+++.+..+. |...|.+++|+|++++|++++.||+|++||+
T Consensus       291 iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         291 AWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            99999999887764 8899999999999999999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-38  Score=323.10  Aligned_cols=285  Identities=20%  Similarity=0.318  Sum_probs=252.2

Q ss_pred             eEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce-----EEEEecCcccCeEEEEEcCCCCEEEEEeCCCc
Q 038577          298 CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES-----YILKQQGHYFDVNCLAYSPDSQLLATGADDNK  372 (860)
Q Consensus       298 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  372 (860)
                      .+..+ .|...|.+++|+|+|++|++++ + |.|++||+.++.     ......+|...|.+++|+|++++|++|+.||.
T Consensus        44 ~~~~~-~H~~~V~~v~fs~~g~~latg~-d-g~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~  120 (337)
T d1gxra_          44 QINTL-NHGEVVCAVTISNPTRHVYTGG-K-GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST  120 (337)
T ss_dssp             EEEEE-CCSSCCCEEEECSSSSEEEEEC-B-SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred             EEEEC-CCCCcEEEEEECCCCCEEEEEE-C-CEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccc
Confidence            34444 5788999999999999999875 4 899999987643     22334578899999999999999999999999


Q ss_pred             EEEEECCC--CeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEE
Q 038577          373 VKVWTVSS--GFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVIC  450 (860)
Q Consensus       373 i~iwd~~~--~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  450 (860)
                      |++||+..  +.....+..|...+..++|+|++..+++++.|+.+++|++.+++....... +...+.++++++++..++
T Consensus       121 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~-~~~~v~~l~~s~~~~~~~  199 (337)
T d1gxra_         121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASCIDISNDGTKLW  199 (337)
T ss_dssp             EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccc
Confidence            99999874  456677888999999999999999999999999999999998887665553 455799999999999999


Q ss_pred             EEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeC
Q 038577          451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPD  530 (860)
Q Consensus       451 ~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  530 (860)
                      +++.++ .+++||+++++.+..+. |...|.+++|+|+++++++++.|+.+++||+..++ ......|...|++++|+|+
T Consensus       200 ~~~~d~-~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~i~~v~~s~~  276 (337)
T d1gxra_         200 TGGLDN-TVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-KYQLHLHESCVLSLKFAYC  276 (337)
T ss_dssp             EEETTS-EEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-EEEECCCSSCEEEEEECTT
T ss_pred             cccccc-cccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccc-cccccccccccceEEECCC
Confidence            999998 99999999999888775 88999999999999999999999999999998887 5567789999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEEC
Q 038577          531 GRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV  610 (860)
Q Consensus       531 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~  610 (860)
                      +++|++++.||.|++||+.+++.+..+....                     .|.+++|+|+|++|++|+.||+|+|||+
T Consensus       277 g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---------------------~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         277 GKWFVSTGKDNLLNAWRTPYGASIFQSKESS---------------------SVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEEECSS---------------------CEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCCEEEEccCCC---------------------CEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            9999999999999999999999988776443                     4999999999999999999999999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.8e-37  Score=318.08  Aligned_cols=309  Identities=19%  Similarity=0.363  Sum_probs=275.8

Q ss_pred             cceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccc
Q 038577          181 KPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDF  260 (860)
Q Consensus       181 ~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (860)
                      ....+.||.+.|++++|+|+++     +|++++.||+|++||+.++..                            ...+
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~~-----~l~s~s~Dg~i~iWd~~~~~~----------------------------~~~~   55 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVFS-----VMVSASEDATIKVWDYETGDF----------------------------ERTL   55 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSSS-----EEEEEESSSCEEEEETTTCCC----------------------------CEEE
T ss_pred             ccEEEcCCCCCeEEEEEcCCCC-----EEEEEeCCCeEEEEECCCCCE----------------------------EEEE
Confidence            4578999999999999999999     999999999999999987543                            2334


Q ss_pred             cCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce
Q 038577          261 SQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES  340 (860)
Q Consensus       261 ~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~  340 (860)
                      ..|...|.+++++|++..++.+..++.+..|+....+....+..+...+.++.++++++.+++++.+ +.+.+||++++.
T Consensus        56 ~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~  134 (317)
T d1vyhc1          56 KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD-KTIKMWEVQTGY  134 (317)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETT-SEEEEEETTTCC
T ss_pred             eCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCceEEeeccC-cceeEeecccce
Confidence            5688899999999999999999999999999999999888888899999999999999999988766 999999999999


Q ss_pred             EEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 038577          341 YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDL  420 (860)
Q Consensus       341 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~  420 (860)
                      ....+.+|...+.+++|+|++.+|++++.|+.|++|+..++.....+..|...+.++.++|++.........+.      
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------  208 (317)
T d1vyhc1         135 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS------  208 (317)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSC------
T ss_pred             eeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccc------
Confidence            99999999999999999999999999999999999999999999999999999999999988654332222221      


Q ss_pred             cccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCc
Q 038577          421 FRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKT  500 (860)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~  500 (860)
                                       ........+.++++++.|+ .|++||+++++++..+.+|...|.+++|+|++++|++++.||.
T Consensus       209 -----------------~~~~~~~~~~~~~~~~~d~-~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~  270 (317)
T d1vyhc1         209 -----------------ETKKSGKPGPFLLSGSRDK-TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT  270 (317)
T ss_dssp             -----------------C-------CCEEEEEETTS-EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE
T ss_pred             -----------------eeeeeccCCceeEeccCCC-EEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCe
Confidence                             1222345677888999998 9999999999999999999999999999999999999999999


Q ss_pred             EEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEe
Q 038577          501 VRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWD  547 (860)
Q Consensus       501 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  547 (860)
                      |++||+.+++.+..+..|...|++++|+|++++|++|+.||+|++||
T Consensus       271 i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         271 LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999998888889999999999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.2e-37  Score=312.29  Aligned_cols=282  Identities=15%  Similarity=0.180  Sum_probs=245.6

Q ss_pred             ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCee--E
Q 038577          307 EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFC--F  384 (860)
Q Consensus       307 ~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~  384 (860)
                      +....++++|+|+.++++..  +.+.+|++.+......+.+|...|++++|+|+|++|++|+.||.|++||+.++..  .
T Consensus        18 ~~~~~~a~~~~g~~l~~~~~--~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~   95 (311)
T d1nr0a1          18 GTAVVLGNTPAGDKIQYCNG--TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK   95 (311)
T ss_dssp             TCCCCCEECTTSSEEEEEET--TEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred             CCeEEEEEcCCCCEEEEEeC--CEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccc
Confidence            45667899999999998864  6799999999988888899999999999999999999999999999999987754  3


Q ss_pred             EEeecCCCceEEEEEeeCCCEEEEEeC--CCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCE-EEEEecCCCeEEE
Q 038577          385 VTFTEHTNAVTALHFMANNHSLLSASL--DGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEV-ICAGTLDSFEIFV  461 (860)
Q Consensus       385 ~~~~~~~~~v~~i~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~v  461 (860)
                      ..+..|..+|.+++|+|+++++++++.  +..+++|++.+++....+..+ ...+.+++|+|++++ +++++.|+ .|++
T Consensus        96 ~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h-~~~v~~v~~~~~~~~~l~sgs~d~-~i~i  173 (311)
T d1nr0a1          96 TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQ-ARAMNSVDFKPSRPFRIISGSDDN-TVAI  173 (311)
T ss_dssp             EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCC-SSCEEEEEECSSSSCEEEEEETTS-CEEE
T ss_pred             cccccccCcccccccccccccccccccccccccccccccccccccccccc-ccccccccccccceeeeccccccc-cccc
Confidence            567889999999999999999999886  456999999988877776543 457999999999986 66677777 9999


Q ss_pred             EECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc-------ccCCCeEEEEEeeCCCEE
Q 038577          462 WSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF-------PHTHDVLTVVYRPDGRQL  534 (860)
Q Consensus       462 ~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l  534 (860)
                      ||+++++....+.+|..+|+++.|+|+++++++++.|+.|++||+.++.....+.       +|...|++++|+|++++|
T Consensus       174 ~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l  253 (311)
T d1nr0a1         174 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI  253 (311)
T ss_dssp             EETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEE
T ss_pred             ccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEE
Confidence            9999999999999999999999999999999999999999999998877544332       478899999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECC
Q 038577          535 ACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVA  611 (860)
Q Consensus       535 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~  611 (860)
                      ++|+.||.|+|||+++++++.++..+...                   ....+.+.+++++|++++.||.|++||.+
T Consensus       254 ~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~-------------------~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         254 ASASADKTIKIWNVATLKVEKTIPVGTRI-------------------EDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSSG-------------------GGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEECCCCc-------------------cceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            99999999999999999999999876542                   12334455567789999999999999974

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.4e-36  Score=308.28  Aligned_cols=284  Identities=15%  Similarity=0.204  Sum_probs=245.3

Q ss_pred             cCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeec
Q 038577           92 FKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVK  171 (860)
Q Consensus        92 ~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~  171 (860)
                      +.+....++++|+|+.||++.++.|.+|++.+...       ...+.+|.+.|++++|+|+|++||+|+.||+|++||+.
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~-------~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~   88 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTD-------TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTT   88 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSC-------CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESS
T ss_pred             CCCCeEEEEEcCCCCEEEEEeCCEEEEEECCCCce-------eEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeee
Confidence            34567789999999999999999999999998763       56788999999999999999999999999999999998


Q ss_pred             ccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcC--CccEEEeeecCCCCCCccccCCCCCCCCCCCccee
Q 038577          172 EKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR--DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRV  249 (860)
Q Consensus       172 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~--dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (860)
                      .. ..   .....+.+|.++|.+++|+|+++     ++++++.  +..+++|+++++..                     
T Consensus        89 ~~-~~---~~~~~~~~~~~~v~~v~~s~d~~-----~l~~~~~~~~~~~~v~~~~~~~~---------------------  138 (311)
T d1nr0a1          89 QT-TH---ILKTTIPVFSGPVKDISWDSESK-----RIAAVGEGRERFGHVFLFDTGTS---------------------  138 (311)
T ss_dssp             ST-TC---CEEEEEECSSSCEEEEEECTTSC-----EEEEEECCSSCSEEEEETTTCCB---------------------
T ss_pred             cc-cc---ccccccccccCcccccccccccc-----ccccccccccccccccccccccc---------------------
Confidence            87 22   23356788999999999999998     8998876  45699999887532                     


Q ss_pred             eeEEeeeeccccCCCCceEEEEecCCCCE-EEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccC
Q 038577          250 KKWGLLRKDDFSQAPSKVTACDYHRGLDM-VVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKL  328 (860)
Q Consensus       250 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~  328 (860)
                             ...+..|...|.+++|+|++++ +++|+.||.|++||+++++....+..+...|.++.|+|+++.+++++.+ 
T Consensus       139 -------~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d-  210 (311)
T d1nr0a1         139 -------NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD-  210 (311)
T ss_dssp             -------CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETT-
T ss_pred             -------cccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCcccccccccccc-
Confidence                   2345567889999999999985 7789999999999999999999999999999999999999999988766 


Q ss_pred             CcEEEEEccCceEEEEe-------cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCC-ceEEEEEe
Q 038577          329 GQLLVWEWRSESYILKQ-------QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTN-AVTALHFM  400 (860)
Q Consensus       329 g~i~v~d~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~i~~~  400 (860)
                      +.+++||..++.....+       .+|...|.+++|+|++++|++|+.||.|++||+++++++.++..|.. ....+.+.
T Consensus       211 ~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~  290 (311)
T d1nr0a1         211 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII  290 (311)
T ss_dssp             SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEE
Confidence            99999999998877665       35788999999999999999999999999999999999999876654 23334445


Q ss_pred             eCCCEEEEEeCCCcEEEEEc
Q 038577          401 ANNHSLLSASLDGTVRAWDL  420 (860)
Q Consensus       401 ~~~~~l~s~~~dg~i~~wd~  420 (860)
                      +++..+++++.||.|++||+
T Consensus       291 ~~~~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         291 WTKQALVSISANGFINFVNP  310 (311)
T ss_dssp             ECSSCEEEEETTCCEEEEET
T ss_pred             ecCCEEEEEECCCEEEEEeC
Confidence            55668999999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-36  Score=319.57  Aligned_cols=342  Identities=19%  Similarity=0.278  Sum_probs=265.4

Q ss_pred             EEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeec
Q 038577          108 IAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLG  187 (860)
Q Consensus       108 la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~  187 (860)
                      +....++...+|+....+..  ...+ ....+|.+.|++++|+|||++||+|+ |+.|++||+.++      .....+..
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~--~~~l-~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~------~~~~~~~~  101 (388)
T d1erja_          32 LKKQTNDYYILYNPALPREI--DVEL-HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG------SLVARLSD  101 (388)
T ss_dssp             SEEECSSCEEEECTTSCCCE--EEEE-EEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTC------CEEEEECC
T ss_pred             cccCCCCcEEEeCCCCCcce--eeee-EeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEeccc------ceEeeecc
Confidence            34446778889987655421  1222 33346999999999999999999986 899999999887      44444444


Q ss_pred             CCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCce
Q 038577          188 HRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKV  267 (860)
Q Consensus       188 h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  267 (860)
                      +.........                                                         ........+...|
T Consensus       102 ~~~~~~~~~~---------------------------------------------------------~~~~~~~~~~~~V  124 (388)
T d1erja_         102 DSAANKDPEN---------------------------------------------------------LNTSSSPSSDLYI  124 (388)
T ss_dssp             --------------------------------------------------------------------------CCCCBE
T ss_pred             cccccccccc---------------------------------------------------------cccccccCCCCCE
Confidence            3322111000                                                         0011223466789


Q ss_pred             EEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecC
Q 038577          268 TACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQG  347 (860)
Q Consensus       268 ~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~  347 (860)
                      .+++|+|++++|++|+.||.|++|+...++.......|...|.++.+++++..+++++.+ +.+++||..+.........
T Consensus       125 ~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~  203 (388)
T d1erja_         125 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD-RTVRIWDLRTGQCSLTLSI  203 (388)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT-SEEEEEETTTTEEEEEEEC
T ss_pred             EEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccc-eeeeeeecccccccccccc
Confidence            999999999999999999999999999999999999999999999999999999988776 9999999999988877766


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe-------ecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 038577          348 HYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTF-------TEHTNAVTALHFMANNHSLLSASLDGTVRAWDL  420 (860)
Q Consensus       348 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~  420 (860)
                      +...+....+.+++.+|++++.||.|++|+..++.....+       .+|...|.+++|+|++++|++++.||.|++||+
T Consensus       204 ~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~  283 (388)
T d1erja_         204 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL  283 (388)
T ss_dssp             SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             ccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEec
Confidence            6655555555558899999999999999999988877655       358889999999999999999999999999998


Q ss_pred             cccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCc
Q 038577          421 FRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKT  500 (860)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~  500 (860)
                      .+.........+                                ..+........|...|.+++|+|++++|++|+.||.
T Consensus       284 ~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~  331 (388)
T d1erja_         284 QNANNKSDSKTP--------------------------------NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG  331 (388)
T ss_dssp             -----------------------------------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE
T ss_pred             cCCccccccccc--------------------------------cccceeeecccccceEEEEEECCCCCEEEEEeCCCE
Confidence            765443222211                                123344455668999999999999999999999999


Q ss_pred             EEEEEccCCcceeEEcccCCCeEEEEE------eeCCCEEEEEeCCCeEEEEeCC
Q 038577          501 VRLWNVFEGKGSVESFPHTHDVLTVVY------RPDGRQLACSTLDGQIHFWDPL  549 (860)
Q Consensus       501 i~iwd~~~~~~~~~~~~~~~~v~~~~~------s~~~~~l~~~~~dg~i~iwd~~  549 (860)
                      |++||+.+++.+..+.+|...|+++++      +|++++|++|+.||+|+||+++
T Consensus       332 i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         332 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            999999999988888899999999975      5689999999999999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-36  Score=311.21  Aligned_cols=291  Identities=23%  Similarity=0.390  Sum_probs=271.3

Q ss_pred             ceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 038577          296 FVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKV  375 (860)
Q Consensus       296 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  375 (860)
                      ......+++|.+.|++++|+|++++|++++.+ |.|++||+.+++.+..+.+|...|.+++|+|++..++++..++.+.+
T Consensus         7 ~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~D-g~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~   85 (317)
T d1vyhc1           7 PPEKYALSGHRSPVTRVIFHPVFSVMVSASED-ATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL   85 (317)
T ss_dssp             SSCSCEEECCSSCEEEEEECSSSSEEEEEESS-SCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred             CCccEEEcCCCCCeEEEEEcCCCCEEEEEeCC-CeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccc
Confidence            34456788999999999999999999888765 99999999999999999999999999999999999999999999999


Q ss_pred             EECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecC
Q 038577          376 WTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLD  455 (860)
Q Consensus       376 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  455 (860)
                      |+.........+..|...+.++.+++++..+++++.|+.+++||+.+++....+..+ ...+.++++++++.++++++.+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d  164 (317)
T d1vyhc1          86 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH-REWVRMVRPNQDGTLIASCSND  164 (317)
T ss_dssp             EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccC-CCcceeeecccCCCEEEEEeCC
Confidence            999999999999999999999999999999999999999999999999888877654 4578999999999999999999


Q ss_pred             CCeEEEEECCCCceEEEecCcccCeEEEEEcCCC--------------------CEEEEEeCCCcEEEEEccCCcceeEE
Q 038577          456 SFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTN--------------------ATLASSSWDKTVRLWNVFEGKGSVES  515 (860)
Q Consensus       456 ~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~--------------------~~l~s~~~dg~i~iwd~~~~~~~~~~  515 (860)
                      + .+++|+..+++....+.+|...+.+++|+|++                    .++++++.|+.|++||+.+++.+..+
T Consensus       165 ~-~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~  243 (317)
T d1vyhc1         165 Q-TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL  243 (317)
T ss_dssp             S-CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             C-eEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEE
Confidence            8 99999999999999999999999999998764                    47899999999999999999988888


Q ss_pred             cccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCE
Q 038577          516 FPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSY  595 (860)
Q Consensus       516 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~  595 (860)
                      ..|...|.+++|+|++++|++++.||.|++||+.+++++.++.+|..                    +|++++|+|++++
T Consensus       244 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~--------------------~V~~~~~s~~~~~  303 (317)
T d1vyhc1         244 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--------------------FVTSLDFHKTAPY  303 (317)
T ss_dssp             ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--------------------CEEEEEECSSSSC
T ss_pred             eCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCC--------------------CEEEEEEcCCCCE
Confidence            89999999999999999999999999999999999999999998875                    5999999999999


Q ss_pred             EEEecCCCeEEEEE
Q 038577          596 ILAGGSSKYICMYD  609 (860)
Q Consensus       596 l~~~~~dg~v~vwd  609 (860)
                      |++|+.||+|++||
T Consensus       304 l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         304 VVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEEETTSEEEEEC
T ss_pred             EEEEeCCCeEEEeC
Confidence            99999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.4e-36  Score=316.51  Aligned_cols=308  Identities=23%  Similarity=0.411  Sum_probs=259.6

Q ss_pred             EEEEcCCeEEEEECCCcee----EEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEec---------
Q 038577          280 VVGFSNGVFGLYQMPDFVC----IHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQ---------  346 (860)
Q Consensus       280 ~~~~~~g~i~~~~~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~---------  346 (860)
                      +.+..++...+|+....+.    +.....|.+.|++++|+|||++|++++  |+.|++||+.+++.+..+.         
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~--d~~i~iW~~~~~~~~~~~~~~~~~~~~~  109 (388)
T d1erja_          32 LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC--NKTTQVYRVSDGSLVARLSDDSAANKDP  109 (388)
T ss_dssp             SEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC--BSCEEEEETTTCCEEEEECC--------
T ss_pred             cccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe--CCeEEEEEecccceEeeecccccccccc
Confidence            3566777888888654332    223335889999999999999998864  4899999999888766553         


Q ss_pred             ---------CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 038577          347 ---------GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRA  417 (860)
Q Consensus       347 ---------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~  417 (860)
                               .|...|++++|+|++++|++|+.||.|++|+...++.+..+.+|...|.++.+++++..+++++.++.+++
T Consensus       110 ~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~  189 (388)
T d1erja_         110 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI  189 (388)
T ss_dssp             ---------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             cccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeee
Confidence                     45567999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEe-------cCcccCeEEEEEcCCCC
Q 038577          418 WDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDIL-------SGHEGPVHGLVFSPTNA  490 (860)
Q Consensus       418 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~-------~~h~~~v~~l~~s~~~~  490 (860)
                      ||..+........... .......+.+++.++++++.++ .|++||..++.....+       .+|.++|.+++|+|+++
T Consensus       190 ~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~-~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~  267 (388)
T d1erja_         190 WDLRTGQCSLTLSIED-GVTTVAVSPGDGKYIAAGSLDR-AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ  267 (388)
T ss_dssp             EETTTTEEEEEEECSS-CEEEEEECSTTCCEEEEEETTS-CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS
T ss_pred             eecccccccccccccc-ccccccccCCCCCeEEEEcCCC-eEEEeecccCccceeeccccccccCCCCCEEEEEECCCCC
Confidence            9999887776655443 2344444556889999999998 9999999998877655       36889999999999999


Q ss_pred             EEEEEeCCCcEEEEEccCCcc------------eeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEe
Q 038577          491 TLASSSWDKTVRLWNVFEGKG------------SVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIE  558 (860)
Q Consensus       491 ~l~s~~~dg~i~iwd~~~~~~------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  558 (860)
                      +|++++.||.|++||+.+...            ......|...|++++|+|++++|++|+.||.|++||+.+++++.++.
T Consensus       268 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~  347 (388)
T d1erja_         268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ  347 (388)
T ss_dssp             EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEe
Confidence            999999999999999976542            23344688999999999999999999999999999999999999999


Q ss_pred             cccccCCCccccccccccccCCCCcEEEEEE------ecCCCEEEEecCCCeEEEEECC
Q 038577          559 GRRDISGGRLMTDRRSAANSSSGKCFTTLCY------SADGSYILAGGSSKYICMYDVA  611 (860)
Q Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~------s~~g~~l~~~~~dg~v~vwd~~  611 (860)
                      +|..                    .|+++++      +|++++|++|+.||+|++|+++
T Consensus       348 ~H~~--------------------~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         348 GHRN--------------------SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             CCSS--------------------CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCCC--------------------CEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            9875                    4888864      6799999999999999999984

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-34  Score=300.17  Aligned_cols=294  Identities=24%  Similarity=0.362  Sum_probs=247.0

Q ss_pred             EEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEE
Q 038577          132 ELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYT  211 (860)
Q Consensus       132 ~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s  211 (860)
                      +..+++.||.+.|++++|+|++++||+|+.||.|+|||+.++      .....+..|...|.+++|+|++.     ++++
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~------~~~~~~~~~~~~v~~v~~~~~~~-----~l~~  114 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT------NKVHAIPLRSSWVMTCAYAPSGN-----YVAC  114 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT------EEEEEEECSCSCEEEEEECTTSS-----EEEE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccc------eeEEEEecccccEEeeEeeccce-----eeee
Confidence            356889999999999999999999999999999999999988      67788899999999999999999     9999


Q ss_pred             EcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEE
Q 038577          212 IARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLY  291 (860)
Q Consensus       212 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~  291 (860)
                      ++.|+.+++|+.......                      +  ....                                 
T Consensus       115 ~~~d~~i~~~~~~~~~~~----------------------~--~~~~---------------------------------  137 (340)
T d1tbga_         115 GGLDNICSIYNLKTREGN----------------------V--RVSR---------------------------------  137 (340)
T ss_dssp             EETTCCEEEEESSSSCSC----------------------C--CEEE---------------------------------
T ss_pred             ecccceeecccccccccc----------------------c--ccce---------------------------------
Confidence            999999999987764220                      0  0000                                 


Q ss_pred             ECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCC
Q 038577          292 QMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDN  371 (860)
Q Consensus       292 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  371 (860)
                               .+..+........ ...+..+.....+ .....+.............+...+....+.+.+..+++|+.|+
T Consensus       138 ---------~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  206 (340)
T d1tbga_         138 ---------ELAGHTGYLSCCR-FLDDNQIVTSSGD-TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA  206 (340)
T ss_dssp             ---------EECCCSSCEEEEE-EEETTEEEEEETT-TEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTT
T ss_pred             ---------ecccccccccccc-ccccccccccccc-ccccccccccccccccccccceeEeeeccccccceeEEeecCc
Confidence                     1111111111111 1222333333333 6777777777777777777888899999999999999999999


Q ss_pred             cEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeC-CCCCcEEEEEECCCCCEEE
Q 038577          372 KVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTT-PSSRQFVSLASDQSGEVIC  450 (860)
Q Consensus       372 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~  450 (860)
                      .|++||+++++.+..+.+|...|++++|+|++++|++++.||.+++|++........+.. .....+.+++++|++++|+
T Consensus       207 ~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  286 (340)
T d1tbga_         207 SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL  286 (340)
T ss_dssp             EEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEE
T ss_pred             eEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEE
Confidence            999999999999999999999999999999999999999999999999998887776643 3455689999999999999


Q ss_pred             EEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038577          451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN  505 (860)
Q Consensus       451 ~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  505 (860)
                      +|+.++ .|++||+.+++.+..+.+|.++|++++|+|++++|++|+.||.|++||
T Consensus       287 ~g~~dg-~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         287 AGYDDF-NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEETTS-CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEECCC-EEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            999998 999999999999999999999999999999999999999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4e-34  Score=296.48  Aligned_cols=290  Identities=20%  Similarity=0.328  Sum_probs=256.2

Q ss_pred             ceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 038577          296 FVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKV  375 (860)
Q Consensus       296 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  375 (860)
                      .+..+++++|.+.|.+++|+|++++|++++.+ |.|++||+.+++.+..+..|...|.+++|+|++.++++|+.|+.+++
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~D-g~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~  123 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQD-GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI  123 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETT-TEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECC-CceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeec
Confidence            35667899999999999999999999988766 99999999999999999999999999999999999999999999999


Q ss_pred             EECCCC----eeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEE
Q 038577          376 WTVSSG----FCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICA  451 (860)
Q Consensus       376 wd~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  451 (860)
                      |+....    .....+.+|........... +..+.....|.....+............ .....+....+.+.+.++++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  201 (340)
T d1tbga_         124 YNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFT-GHTGDVMSLSLAPDTRLFVS  201 (340)
T ss_dssp             EESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSSEEEE
T ss_pred             ccccccccccccceeccccccccccccccc-cccccccccccccccccccccccccccc-ccceeEeeeccccccceeEE
Confidence            997643    45566777777766665554 4578888889999999887665554444 34457888999999999999


Q ss_pred             EecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc--ccCCCeEEEEEee
Q 038577          452 GTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF--PHTHDVLTVVYRP  529 (860)
Q Consensus       452 ~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~  529 (860)
                      +..++ .+++||+++++.+..+.+|.++|++++|+|++++|++++.||.|++||+..........  .+...+++++|+|
T Consensus       202 ~~~d~-~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  280 (340)
T d1tbga_         202 GACDA-SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK  280 (340)
T ss_dssp             EETTT-EEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECS
T ss_pred             eecCc-eEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECC
Confidence            99999 99999999999999999999999999999999999999999999999998887555443  5777899999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEE
Q 038577          530 DGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYD  609 (860)
Q Consensus       530 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd  609 (860)
                      ++++|++|+.||.|++||+.+++++..+.+|..                    +|++++|+|+|++|++|+.||.|++||
T Consensus       281 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~--------------------~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--------------------RVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTCCEEEEECCCSS--------------------CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCEEEEEECCCEEEEEECCCCcEEEEEcCCCC--------------------CEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            999999999999999999999999999998875                    599999999999999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.6e-35  Score=305.42  Aligned_cols=292  Identities=16%  Similarity=0.232  Sum_probs=240.3

Q ss_pred             cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEee
Q 038577           92 FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYV  170 (860)
Q Consensus        92 ~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~  170 (860)
                      ...||+|++|+|||++||++ .++.|+|||..+++     +.++..+.+|.+.|.+++|+|++++|++++.|+.|++||+
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~-----~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~   80 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-----WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL   80 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-----EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCC-----EEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEee
Confidence            35789999999999999998 67899999998764     2356788999999999999999999999999999999999


Q ss_pred             cccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceee
Q 038577          171 KEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVK  250 (860)
Q Consensus       171 ~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (860)
                      .+. ..   .....+.+|...|.++.|+|+++     .+++++.|+++++|+++....                      
T Consensus        81 ~~~-~~---~~~~~~~~~~~~v~~i~~~p~~~-----~l~~~s~d~~i~i~~~~~~~~----------------------  129 (371)
T d1k8kc_          81 KGR-TW---KPTLVILRINRAARCVRWAPNEK-----KFAVGSGSRVISICYFEQEND----------------------  129 (371)
T ss_dssp             ETT-EE---EEEEECCCCSSCEEEEEECTTSS-----EEEEEETTSSEEEEEEETTTT----------------------
T ss_pred             ccc-cc---ccccccccccccccccccccccc-----cceeecccCcceeeeeecccc----------------------
Confidence            876 22   23456678999999999999999     999999999999999987532                      


Q ss_pred             eEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCC------------------ceeEEEEeecCceeEEE
Q 038577          251 KWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPD------------------FVCIHLLSISREKITTA  312 (860)
Q Consensus       251 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~------------------~~~~~~~~~~~~~i~~~  312 (860)
                      .+.  .......+...|.+++|+|++++|++|+.||.+++|+...                  ++.......+...+.++
T Consensus       130 ~~~--~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  207 (371)
T d1k8kc_         130 WWV--CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV  207 (371)
T ss_dssp             EEE--EEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEE
T ss_pred             ccc--ccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEE
Confidence            111  1233456778999999999999999999999999999753                  23456667788889999


Q ss_pred             EEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--CeeEEE----
Q 038577          313 VFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS--GFCFVT----  386 (860)
Q Consensus       313 ~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~~~----  386 (860)
                      +|+|+|+.+++++.+ +.|++||+.++..+..+..|..+|.+++|+|+++++++|. |+.+++|....  +.....    
T Consensus       208 ~~s~~g~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~  285 (371)
T d1k8kc_         208 CFSANGSRVAWVSHD-STVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLD  285 (371)
T ss_dssp             EECSSSSEEEEEETT-TEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCC
T ss_pred             EeecccccccccccC-CcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeec
Confidence            999999999888765 9999999999999999999999999999999998777655 67766665432  211100    


Q ss_pred             -----------------------------------eecCCCceEEEEEeeCC----CEEEEEeCCCcEEEEEcccc
Q 038577          387 -----------------------------------FTEHTNAVTALHFMANN----HSLLSASLDGTVRAWDLFRY  423 (860)
Q Consensus       387 -----------------------------------~~~~~~~v~~i~~~~~~----~~l~s~~~dg~i~~wd~~~~  423 (860)
                                                         ...|.+.|+++++.+.+    ..++|+|.||.|++||+++.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~  361 (371)
T d1k8kc_         286 VPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  361 (371)
T ss_dssp             CC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             CccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcC
Confidence                                               01288899999998854    35899999999999999653

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-34  Score=303.54  Aligned_cols=306  Identities=17%  Similarity=0.198  Sum_probs=244.0

Q ss_pred             cCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce--EEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 038577          305 SREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES--YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGF  382 (860)
Q Consensus       305 ~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  382 (860)
                      ..++|++++|+|+|+.+++++.+ |.|++||..+++  .+..+.+|..+|.+++|+|++++|++++.|+.|++||+.++.
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~-~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~   84 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNN-HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT   84 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSS-SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCC-CEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc
Confidence            34689999999999999988665 999999998775  556678999999999999999999999999999999998765


Q ss_pred             e--EEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcccccee---eEeeCCCCCcEEEEEECCCCCEEEEEecCCC
Q 038577          383 C--FVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNF---RTFTTPSSRQFVSLASDQSGEVICAGTLDSF  457 (860)
Q Consensus       383 ~--~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  457 (860)
                      .  ...+..|...|.+++|+|+++.+++++.|+.+++|++......   ......+...+.+++++|+++++++++.|+ 
T Consensus        85 ~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~-  163 (371)
T d1k8kc_          85 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF-  163 (371)
T ss_dssp             EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS-
T ss_pred             cccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCc-
Confidence            4  4455678899999999999999999999999999998776543   333445567899999999999999999999 


Q ss_pred             eEEEEECCCC------------------ceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccC
Q 038577          458 EIFVWSMKTG------------------RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHT  519 (860)
Q Consensus       458 ~i~v~d~~~~------------------~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  519 (860)
                      .+++||....                  +.+....+|.+.|.+++|+|++++|++++.|+.|++||+.++.....+..|.
T Consensus       164 ~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  243 (371)
T d1k8kc_         164 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET  243 (371)
T ss_dssp             CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred             EEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeeccc
Confidence            9999997643                  3566677899999999999999999999999999999999998888888899


Q ss_pred             CCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCcc----c-----------------ccccccccc
Q 038577          520 HDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRL----M-----------------TDRRSAANS  578 (860)
Q Consensus       520 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~-----------------~~~~~~~~~  578 (860)
                      .+|.+++|+|++++|++|. |+.+++|..........+..+.+......    .                 .........
T Consensus       244 ~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (371)
T d1k8kc_         244 LPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS  322 (371)
T ss_dssp             CCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSS
T ss_pred             ccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecc
Confidence            9999999999998887765 67666665544333322222111110000    0                 000011123


Q ss_pred             CCCCcEEEEEEecCC----CEEEEecCCCeEEEEECCCc
Q 038577          579 SSGKCFTTLCYSADG----SYILAGGSSKYICMYDVADQ  613 (860)
Q Consensus       579 ~~~~~i~~l~~s~~g----~~l~~~~~dg~v~vwd~~~~  613 (860)
                      .|...|+++++.+.+    ..++|++.||.|++||+++.
T Consensus       323 ~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~  361 (371)
T d1k8kc_         323 LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  361 (371)
T ss_dssp             SSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             cccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcC
Confidence            477789999998865    36899999999999999663

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-34  Score=300.13  Aligned_cols=325  Identities=17%  Similarity=0.282  Sum_probs=258.9

Q ss_pred             EEEeeccCCCe-EEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEE
Q 038577          134 IRTLADCNDKV-TALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTI  212 (860)
Q Consensus       134 ~~~~~~h~~~v-~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~  212 (860)
                      ..++.||.+.| +|++|  ++++|++|+.||+|+|||+.++      .....+.+|.++|.+++|+|++      +|+++
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~------~~~~~l~~H~~~V~~l~~s~~~------~l~s~   70 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINK------KFLLQLSGHDGGVWALKYAHGG------ILVSG   70 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTT------EEEEEEECCSSCEEEEEEETTT------EEEEE
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCC------cEEEEEECCCCCEEEEEEcCCC------EEEEE
Confidence            56789998886 56555  6789999999999999999988      6788999999999999999864      89999


Q ss_pred             cCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEE
Q 038577          213 ARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQ  292 (860)
Q Consensus       213 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~  292 (860)
                      +.|+++++|+......                          .................+.+++..+++++.||.|++|+
T Consensus        71 s~D~~i~iw~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~  124 (355)
T d1nexb2          71 STDRTVRVWDIKKGCC--------------------------THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK  124 (355)
T ss_dssp             ETTCCEEEEETTTTEE--------------------------EEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEE
T ss_pred             eccccccccccccccc--------------------------ccccccccccccccccccccccceeeeecCCCcEEEEE
Confidence            9999999999876432                          11122223334456677889999999999999999999


Q ss_pred             CCCceeEEEEeecC---------------------ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccC
Q 038577          293 MPDFVCIHLLSISR---------------------EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFD  351 (860)
Q Consensus       293 ~~~~~~~~~~~~~~---------------------~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~  351 (860)
                      +.+...........                     .......+.++++.++.+..+ +.+++||+.+++.+....++...
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d-~~i~~~d~~~~~~~~~~~~~~~~  203 (355)
T d1nexb2         125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD-NTLIVWDVAQMKCLYILSGHTDR  203 (355)
T ss_dssp             CCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETT-SCEEEEETTTTEEEEEECCCSSC
T ss_pred             ccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeeccc-ceeeeeecccccceeeeeccccc
Confidence            97655433221110                     111234566778888887766 99999999999999998889999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeC
Q 038577          352 VNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTT  431 (860)
Q Consensus       352 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~  431 (860)
                      +.++.++|++..+++++.|+.|++||..++..+..+.+|...|.++++++  ++|++++.||.|++||+.+.........
T Consensus       204 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~  281 (355)
T d1nexb2         204 IYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSYHH  281 (355)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cccccccccceeeecccccceEEeeecccccccccccccccccccccccc--ceeeeeecccccccccccccceeccccc
Confidence            99999999999999999999999999999999999999999999999864  5899999999999999988765544433


Q ss_pred             CCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEE-EecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 038577          432 PSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLD-ILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNV  506 (860)
Q Consensus       432 ~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~-~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~  506 (860)
                      ..  ......+++++.++++++ |+ .|++||+++++++. .+.+|.++|.+++|+|+ .++++++.||+++||.+
T Consensus       282 ~~--~~~~~~~~~~~~~l~~g~-d~-~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         282 TN--LSAITTFYVSDNILVSGS-EN-QFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             TT--CCCCCEEEECSSEEEEEE-TT-EEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             CC--ceEEEEEcCCCCEEEEEe-CC-EEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            22  223345677888777765 66 99999999999885 56789999999999986 47888999999777654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.3e-34  Score=290.97  Aligned_cols=291  Identities=15%  Similarity=0.196  Sum_probs=230.5

Q ss_pred             CcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee--cCCceeEEEECCCCCEEEEEeCCeEEEE
Q 038577           42 SKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR--FKYPVNAILFSPNGKYIAVGTGKLVQIW  119 (860)
Q Consensus        42 ~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~--~~~~v~~~~fspdg~~la~~~~~~i~iw  119 (860)
                      |+...++.||...|++++|||||++||+|+.||+|++||+.+++.+..+.  |...|++++|+|+|++++++.|+.+++|
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~   81 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVV   81 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEe
Confidence            56778888999999999999999999999999999999999999998875  7889999999999999999999999999


Q ss_pred             eCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEcc
Q 038577          120 RSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSV  199 (860)
Q Consensus       120 d~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~  199 (860)
                      +.........    ......|...+.+++|+|+++++++++ ++.+++|+....        ...  .....+.+++|+|
T Consensus        82 ~~~~~~~~~~----~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~--------~~~--~~~~~~~~~~~s~  146 (299)
T d1nr0a2          82 PAGGSGVDSS----KAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKL--------TEV--PISYNSSCVALSN  146 (299)
T ss_dssp             CSSSSSSCTT----SCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEE--------EEE--ECSSCEEEEEECT
T ss_pred             ccCCcccccc----ccccccccccccccccccccccccccc-cccccccccccc--------ccc--ccccccccccccc
Confidence            9876432111    122345778899999999998777665 568999985433        112  2344678899999


Q ss_pred             CCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEE
Q 038577          200 DKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMV  279 (860)
Q Consensus       200 ~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  279 (860)
                      +++     ++++++.|+.+++||+.++..                           .......|...|.+++|+|+++++
T Consensus       147 ~~~-----~l~~g~~dg~i~~~d~~~~~~---------------------------~~~~~~~~~~~i~~~~~~~~~~~l  194 (299)
T d1nr0a2         147 DKQ-----FVAVGGQDSKVHVYKLSGASV---------------------------SEVKTIVHPAEITSVAFSNNGAFL  194 (299)
T ss_dssp             TSC-----EEEEEETTSEEEEEEEETTEE---------------------------EEEEEEECSSCEEEEEECTTSSEE
T ss_pred             ccc-----ccccccccccccccccccccc---------------------------cccccccccccccccccccccccc
Confidence            999     999999999999999986421                           111223466789999999999999


Q ss_pred             EEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcC
Q 038577          280 VVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSP  359 (860)
Q Consensus       280 ~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~  359 (860)
                      ++++.+|.|++|++.++......                                        ..+.+|...|++++|+|
T Consensus       195 ~~~~~d~~i~~~~~~~~~~~~~~----------------------------------------~~~~~h~~~v~~l~~s~  234 (299)
T d1nr0a2         195 VATDQSRKVIPYSVANNFELAHT----------------------------------------NSWTFHTAKVACVSWSP  234 (299)
T ss_dssp             EEEETTSCEEEEEGGGTTEESCC----------------------------------------CCCCCCSSCEEEEEECT
T ss_pred             ccccccccccccccccccccccc----------------------------------------ccccccccccccccccc
Confidence            99999999999987544322110                                        12346888999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCee--EEEeecCC-CceEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 038577          360 DSQLLATGADDNKVKVWTVSSGFC--FVTFTEHT-NAVTALHFMANNHSLLSASLDGTVRAWDL  420 (860)
Q Consensus       360 ~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~-~~v~~i~~~~~~~~l~s~~~dg~i~~wd~  420 (860)
                      ++++|++|+.||.|++||+.++..  ......|. ..+.++.+ +++.+|++++.|+.|++||+
T Consensus       235 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         235 DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEEC
T ss_pred             cccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEec
Confidence            999999999999999999987643  33333344 45666655 56779999999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-33  Score=289.88  Aligned_cols=324  Identities=21%  Similarity=0.306  Sum_probs=263.3

Q ss_pred             EEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEE
Q 038577          133 LIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTI  212 (860)
Q Consensus       133 ~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~  212 (860)
                      +...+.||.+.|.+ +++++|++||+|+.||+|+|||+.++      .....+.+|.+.|.+++|+++       +|+++
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~------~~~~~~~~h~~~V~~v~~~~~-------~l~s~   73 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTG------KCLRTLVGHTGGVWSSQMRDN-------IIISG   73 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTC------CEEEECCCCSSCEEEEEEETT-------EEEEE
T ss_pred             cCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCC------CEEEEEeCCCCCEEEEEeCCC-------ccccc
Confidence            45788999999865 46678999999999999999999988      677889999999999999874       89999


Q ss_pred             cCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEE
Q 038577          213 ARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQ  292 (860)
Q Consensus       213 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~  292 (860)
                      +.|+.+++|+......                            ..........+.....  ....+..+..++.+.+|+
T Consensus        74 s~D~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~  123 (342)
T d2ovrb2          74 STDRTLKVWNAETGEC----------------------------IHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWD  123 (342)
T ss_dssp             ETTSCEEEEETTTTEE----------------------------EEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE
T ss_pred             eecccccccccccccc----------------------------eecccccceeEeeeec--ccccccccccceeEEEee
Confidence            9999999999876421                            1111222333444433  345788999999999999


Q ss_pred             CCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCc
Q 038577          293 MPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNK  372 (860)
Q Consensus       293 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  372 (860)
                      ..+++....+.......  ....+....++.++.+ +.+++||......+..+.+|...+..+.+  ++..+++++.||.
T Consensus       124 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~  198 (342)
T d2ovrb2         124 IETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYD-FMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS  198 (342)
T ss_dssp             SSSCCEEEEEECCSSCE--EEEEECSSCEEEEETT-SCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSC
T ss_pred             cccccceeeeecccccc--eeeccccceeeeecCC-CeEEEeecccceeeEEEcCcccccccccC--CCCEEEEEeCCCe
Confidence            99888877766554433  3445566677777665 99999999999999999888877665554  6789999999999


Q ss_pred             EEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEE
Q 038577          373 VKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAG  452 (860)
Q Consensus       373 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  452 (860)
                      |++||++.++.+..+..|...+.++.+++  +++++++.|+.|++||+...+....+...........++.+++++++++
T Consensus       199 i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  276 (342)
T d2ovrb2         199 IRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS  276 (342)
T ss_dssp             EEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEE
T ss_pred             EEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEE
Confidence            99999999999999999999999887764  5999999999999999999888887776544333334444556799999


Q ss_pred             ecCCCeEEEEECCCCceEEEec-----CcccCeEEEEEcCCCCEEEEEeCCCc----EEEEEccC
Q 038577          453 TLDSFEIFVWSMKTGRLLDILS-----GHEGPVHGLVFSPTNATLASSSWDKT----VRLWNVFE  508 (860)
Q Consensus       453 ~~~~~~i~v~d~~~~~~~~~~~-----~h~~~v~~l~~s~~~~~l~s~~~dg~----i~iwd~~~  508 (860)
                      +.|+ .|++||+++++.++.+.     +|.+.|++++|+|++.++++|+.||+    |++||+..
T Consensus       277 s~Dg-~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         277 SDDG-TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             ETTS-EEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             cCCC-EEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            9998 99999999999988773     57788999999999999999999986    99999864

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-33  Score=294.57  Aligned_cols=341  Identities=13%  Similarity=0.199  Sum_probs=256.0

Q ss_pred             EeeccCCccCe-eEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee-cCCceeEEEECCCCCEEEEE-eCCeEEEEeC
Q 038577           45 VTLPVESSSNI-CRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-FKYPVNAILFSPNGKYIAVG-TGKLVQIWRS  121 (860)
Q Consensus        45 ~~~~~~h~~~v-~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~fspdg~~la~~-~~~~i~iwd~  121 (860)
                      +..+.||...| +|++  ++|++||+|+.||+|+|||+.+++++..+. |.++|.+++|+|++ +|+++ .|+.|++|+.
T Consensus         5 ~~tL~GH~~~vitc~~--~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~   81 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDI   81 (355)
T ss_dssp             EEEEECCSSSCEEEEE--EETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT-EEEEEETTCCEEEEET
T ss_pred             cEEECCcCCCcEEEEE--ECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC-EEEEEecccccccccc
Confidence            45567998886 6654  568899999999999999999999999998 99999999999976 45555 8999999999


Q ss_pred             CCCCcccceeEEEEEee--ccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEcc
Q 038577          122 PGFKKEVFAFELIRTLA--DCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSV  199 (860)
Q Consensus       122 ~~~~~~~~~~~~~~~~~--~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~  199 (860)
                      ...+.       .....  .+........+++++.++++++.|+.|++|++...      .......... ........+
T Consensus        82 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~------~~~~~~~~~~-~~~~~~~~~  147 (355)
T d1nexb2          82 KKGCC-------THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE------SSVPDHGEEH-DYPLVFHTP  147 (355)
T ss_dssp             TTTEE-------EEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC------------------CCCEEESCT
T ss_pred             ccccc-------ccccccccccccccccccccccceeeeecCCCcEEEEEccCC------ceeccccccc-eeccceecc
Confidence            88753       22222  23344566778899999999999999999999876      1111111111 111111111


Q ss_pred             CCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEE
Q 038577          200 DKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMV  279 (860)
Q Consensus       200 ~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  279 (860)
                      ....    .+..                                               ....+...+  ..+.++++.+
T Consensus       148 ~~~~----~~~~-----------------------------------------------~~~~~~~~v--~~~~~~~~~~  174 (355)
T d1nexb2         148 EENP----YFVG-----------------------------------------------VLRGHMASV--RTVSGHGNIV  174 (355)
T ss_dssp             TTCT----TEEE-----------------------------------------------EEECCSSCE--EEEEEETTEE
T ss_pred             cccc----ceee-----------------------------------------------eeeeccccc--ccccccccee
Confidence            1110    0000                                               001122223  3445678899


Q ss_pred             EEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcC
Q 038577          280 VVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSP  359 (860)
Q Consensus       280 ~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~  359 (860)
                      +++..++.+++||+.+++.+.....+...+.++.+++++..+++++.+ +.+++||.+++..+..+.+|...|.++++++
T Consensus       175 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~  253 (355)
T d1nexb2         175 VSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD-TTIRIWDLENGELMYTLQGHTALVGLLRLSD  253 (355)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT-SCEEEEETTTCCEEEEECCCSSCCCEEEECS
T ss_pred             eeecccceeeeeecccccceeeeeccccccccccccccceeeeccccc-ceEEeeecccccccccccccccccccccccc
Confidence            999999999999999999999999899999999999999999988876 9999999999999999999999999999974


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEE-EeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEE
Q 038577          360 DSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALH-FMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFV  438 (860)
Q Consensus       360 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~-~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  438 (860)
                        ++|++|+.||.|++||++++....  ..|...+.++. +++++.++++ +.|+.|++||+++++.+......+...+.
T Consensus       254 --~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~-g~d~~i~vwd~~tg~~~~~~~~~~~~~V~  328 (355)
T d1nexb2         254 --KFLVSAAADGSIRGWDANDYSRKF--SYHHTNLSAITTFYVSDNILVS-GSENQFNIYNLRSGKLVHANILKDADQIW  328 (355)
T ss_dssp             --SEEEEECTTSEEEEEETTTCCEEE--EEECTTCCCCCEEEECSSEEEE-EETTEEEEEETTTCCBCCSCTTTTCSEEE
T ss_pred             --ceeeeeecccccccccccccceec--ccccCCceEEEEEcCCCCEEEE-EeCCEEEEEECCCCCEEEEEecCCCCCEE
Confidence              689999999999999998876543  44666666654 4566665554 56899999999999988766666777899


Q ss_pred             EEEECCCCCEEEEEecCCCeEEEEE
Q 038577          439 SLASDQSGEVICAGTLDSFEIFVWS  463 (860)
Q Consensus       439 ~~~~~~~~~~l~~~~~~~~~i~v~d  463 (860)
                      +++++|+ .++++++.|+ ++++|.
T Consensus       329 ~v~~~~~-~~~~~~s~dg-~~~l~~  351 (355)
T d1nexb2         329 SVNFKGK-TLVAAVEKDG-QSFLEI  351 (355)
T ss_dssp             EEEEETT-EEEEEEESSS-CEEEEE
T ss_pred             EEEEcCC-eEEEEEECCC-cEEEEE
Confidence            9999986 4677777777 655543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.8e-33  Score=283.03  Aligned_cols=289  Identities=16%  Similarity=0.147  Sum_probs=232.4

Q ss_pred             ceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEec-CcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 038577          296 FVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQ-GHYFDVNCLAYSPDSQLLATGADDNKVK  374 (860)
Q Consensus       296 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~  374 (860)
                      |+..+.+.+|...|++++|+|+|++|++++.+ |.|++||+++++....+. .|...|++++|+|++.+ ++++.|+.++
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~D-g~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~   79 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAE-GHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLK   79 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETT-SCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCC-CeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEE
Confidence            56778899999999999999999999988765 999999999998887774 68999999999999975 5566789999


Q ss_pred             EEECCCCee---EEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEE
Q 038577          375 VWTVSSGFC---FVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICA  451 (860)
Q Consensus       375 iwd~~~~~~---~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  451 (860)
                      +|+......   ......+...+.+++++++++.+++++ ++.+.+|+.....   ..  .......+++++|+++++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~~---~~--~~~~~~~~~~~s~~~~~l~~  153 (299)
T d1nr0a2          80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKLT---EV--PISYNSSCVALSNDKQFVAV  153 (299)
T ss_dssp             EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEEE---EE--ECSSCEEEEEECTTSCEEEE
T ss_pred             EeccCCccccccccccccccccccccccccccccccccc-ccccccccccccc---cc--cccccccccccccccccccc
Confidence            999764321   122345778899999999998766654 5689999854322   12  22345788999999999999


Q ss_pred             EecCCCeEEEEECCCCceEE-EecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCccee---EEcccCCCeEEEEE
Q 038577          452 GTLDSFEIFVWSMKTGRLLD-ILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSV---ESFPHTHDVLTVVY  527 (860)
Q Consensus       452 ~~~~~~~i~v~d~~~~~~~~-~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~  527 (860)
                      ++.++ .+++||+++++... ....|..+|++++|+|++++|++++.|+.|++||+.++....   ....|...|++++|
T Consensus       154 g~~dg-~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  232 (299)
T d1nr0a2         154 GGQDS-KVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW  232 (299)
T ss_dssp             EETTS-EEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEE
T ss_pred             ccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99998 99999999877654 345689999999999999999999999999999998876443   33458899999999


Q ss_pred             eeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEE
Q 038577          528 RPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICM  607 (860)
Q Consensus       528 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~v  607 (860)
                      +|++++|++|+.||.|++||+.++........+..                 +...+.+++ ++++++|++++.||.|++
T Consensus       233 s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~~v~~~~-~~~~~~l~s~s~D~~i~i  294 (299)
T d1nr0a2         233 SPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAH-----------------AMSSVNSVI-WLNETTIVSAGQDSNIKF  294 (299)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSS-----------------TTSCEEEEE-EEETTEEEEEETTSCEEE
T ss_pred             cccccceEEEcCCCEEEEEECCCCCcceEEEecCC-----------------CCCcEEEEE-ECCCCEEEEEeCCCEEEE
Confidence            99999999999999999999988765433322111                 112466665 466789999999999999


Q ss_pred             EECC
Q 038577          608 YDVA  611 (860)
Q Consensus       608 wd~~  611 (860)
                      ||++
T Consensus       295 Wdl~  298 (299)
T d1nr0a2         295 WNVP  298 (299)
T ss_dssp             EECC
T ss_pred             Eecc
Confidence            9984

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-32  Score=280.14  Aligned_cols=335  Identities=21%  Similarity=0.362  Sum_probs=274.1

Q ss_pred             EECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCC
Q 038577          291 YQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADD  370 (860)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  370 (860)
                      |+....+....+++|.+.|.+ +++++|++|++++.+ |.|++||+.+++.+..+.+|...|.+++|+|+  +|++|+.|
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~D-g~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D   76 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDD-NTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTD   76 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETT-SCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETT
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCC-CeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceec
Confidence            344566777889999998865 578889999888765 99999999999999999999999999999875  89999999


Q ss_pred             CcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEE
Q 038577          371 NKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVIC  450 (860)
Q Consensus       371 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  450 (860)
                      +.+++|+............+...+......  ...+..+..|+.+.+|+..+++....+......   .....+....++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  151 (342)
T d2ovrb2          77 RTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA---VRCVQYDGRRVV  151 (342)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSC---EEEEEECSSCEE
T ss_pred             ccccccccccccceecccccceeEeeeecc--cccccccccceeEEEeecccccceeeeeccccc---ceeeccccceee
Confidence            999999999888887777777777666544  457888999999999999998877776655432   233445667788


Q ss_pred             EEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeC
Q 038577          451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPD  530 (860)
Q Consensus       451 ~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  530 (860)
                      .++.++ .+++||....+.+..+.+|...+..+.+  ++.++++++.||.|++||+..++.......|...+.++.++  
T Consensus       152 ~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--  226 (342)
T d2ovrb2         152 SGAYDF-MVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--  226 (342)
T ss_dssp             EEETTS-CEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--
T ss_pred             eecCCC-eEEEeecccceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--
Confidence            888888 9999999999999999999887766555  78899999999999999999998888888899999887765  


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEEC
Q 038577          531 GRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV  610 (860)
Q Consensus       531 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~  610 (860)
                      +++|++++.||.|++||+.+.+....+..+...                 ...+.++.+  +++++++++.||.|++||+
T Consensus       227 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~-----------------~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~  287 (342)
T d2ovrb2         227 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH-----------------QSAVTCLQF--NKNFVITSSDDGTVKLWDL  287 (342)
T ss_dssp             TTEEEEEETTSCEEEEETTTCCEEEEECSTTSC-----------------SSCEEEEEE--CSSEEEEEETTSEEEEEET
T ss_pred             CCEEEEEcCCCEEEEEeccccccccccccccee-----------------eeceeeccc--CCCeeEEEcCCCEEEEEEC
Confidence            569999999999999999999888887765431                 123555544  6789999999999999999


Q ss_pred             CCceEEEEEeecccccccceeeeccCCCCCCCCCCccccCCCCCccccccccccCccccCCCCCCCCCCCCccceeEEEE
Q 038577          611 ADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKI  690 (860)
Q Consensus       611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  690 (860)
                      +++++++++.....                                                      ..+...|.+++|
T Consensus       288 ~tg~~i~~~~~~~~------------------------------------------------------~~~~~~v~~v~~  313 (342)
T d2ovrb2         288 KTGEFIRNLVTLES------------------------------------------------------GGSGGVVWRIRA  313 (342)
T ss_dssp             TTCCEEEEEEECTT------------------------------------------------------GGGTCEEEEEEE
T ss_pred             CCCCEEEEEecccC------------------------------------------------------CCCCCCEEEEEE
Confidence            99999887653210                                                      012347899999


Q ss_pred             CCCCCeEEEecccc-----EEEEecCC
Q 038577          691 APTGRNFVAATTEG-----VLVYSIDE  712 (860)
Q Consensus       691 spdg~~~~~~~~~g-----~~i~~~~~  712 (860)
                      +|+|+.+++++.+|     +.+|+.+.
T Consensus       314 s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         314 SNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             CSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            99999999999988     45787764

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=5.5e-30  Score=261.96  Aligned_cols=291  Identities=17%  Similarity=0.233  Sum_probs=224.3

Q ss_pred             CCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeecc-CCCeEEEEEcC--CCCeEEEeecCCeEEEEe
Q 038577           93 KYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADC-NDKVTALNWSP--DSNYLLVGSKDLAVRLFY  169 (860)
Q Consensus        93 ~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~--d~~~l~s~~~dg~v~vwd  169 (860)
                      ...+++++|+|+|..||++.+..+.++.+.......   .....+.+| ...|++++|+|  ++.+|++|+.||+|++||
T Consensus        17 ~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~---~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd   93 (325)
T d1pgua1          17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV---PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG   93 (325)
T ss_dssp             TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSS---CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCc---cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEee
Confidence            345789999999999999977766555444332211   135667787 46799999998  568999999999999999


Q ss_pred             ecccccCc--ccccceEeecCCCcEEEEEEccCCCCCccceEEEEcC--CccEEEeeecCCCCCCccccCCCCCCCCCCC
Q 038577          170 VKEKLKGI--HTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR--DCYMFSWGFSGNDGKIDETMEDSEPPSPGTP  245 (860)
Q Consensus       170 ~~~~~~~~--~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~--dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  245 (860)
                      +.......  ..........|.++|.+++|+++++     ++++++.  ++.+.+|+.+++..                 
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-----~l~~~~~~~~~~~~~~~~~~~~~-----------------  151 (325)
T d1pgua1          94 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR-----RLCVVGEGRDNFGVFISWDSGNS-----------------  151 (325)
T ss_dssp             EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS-----EEEEEECCSSCSEEEEETTTCCE-----------------
T ss_pred             ecCCcceeeeecccccccccccCcEEEEEECCCCC-----ccceeeccccceEEEEeeccccc-----------------
Confidence            98762110  0011234567899999999999998     8887764  67899998876432                 


Q ss_pred             cceeeeEEeeeeccccCCCCceEEEEecCCCCE-EEEEEcCCeEEEEECCCceeEEEEee---cCceeEEEEEeeCC-CE
Q 038577          246 ERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDM-VVVGFSNGVFGLYQMPDFVCIHLLSI---SREKITTAVFNELG-NW  320 (860)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~g~i~~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~-~~  320 (860)
                                 ...+.+|...|.+++|+|+++. +++++.||.+++|+....+.......   +...|.+++|+|++ ..
T Consensus       152 -----------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~  220 (325)
T d1pgua1         152 -----------LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEF  220 (325)
T ss_dssp             -----------EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCE
T ss_pred             -----------ceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeecccccee
Confidence                       2334578889999999999876 66788999999999988887766544   45679999999985 55


Q ss_pred             EEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEc---CCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCc--eE
Q 038577          321 LVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYS---PDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNA--VT  395 (860)
Q Consensus       321 l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~  395 (860)
                      +++++ .|+.|++||.++++.+..+.+|...+.++.|+   |+|++|++++.|+.|++||+++++++..+..|...  +.
T Consensus       221 l~s~~-~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~  299 (325)
T d1pgua1         221 VITVG-SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQ  299 (325)
T ss_dssp             EEEEE-TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGC
T ss_pred             ccccc-cccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCe
Confidence            55555 45999999999999999998888877666665   78999999999999999999999999888766654  33


Q ss_pred             EEEEeeC-CCEEEEEeCCCcEEEEEc
Q 038577          396 ALHFMAN-NHSLLSASLDGTVRAWDL  420 (860)
Q Consensus       396 ~i~~~~~-~~~l~s~~~dg~i~~wd~  420 (860)
                      .+++.+. +.++++++.||.|++||+
T Consensus       300 ~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         300 QVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             EEEEEECCCCEEEEEECCCEEEEEEC
Confidence            4444332 347899999999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.3e-30  Score=261.50  Aligned_cols=292  Identities=14%  Similarity=0.170  Sum_probs=232.3

Q ss_pred             CCeEEEEEcCCCCeEEEeecCC-eEEEEeecccccCcccccceEeecC-CCcEEEEEEcc--CCCCCccceEEEEcCCcc
Q 038577          142 DKVTALNWSPDSNYLLVGSKDL-AVRLFYVKEKLKGIHTNKPFLLLGH-RDSVVGCFFSV--DKKTDKVNRIYTIARDCY  217 (860)
Q Consensus       142 ~~v~~l~~s~d~~~l~s~~~dg-~v~vwd~~~~~~~~~~~~~~~~~~h-~~~i~~~~~~~--~~~~~~~~~l~s~~~dg~  217 (860)
                      +.+++++|+|+++.|+.++.+. .|+.|+.... ..   .....+.+| ...|++++|+|  ++.     +|++++.||+
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~-~~---~~~~~~~gh~~~~v~~v~fsP~~~g~-----~lasgs~Dg~   88 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDS-KV---PPVVQFTGHGSSVVTTVKFSPIKGSQ-----YLCSGDESGK   88 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCC-SS---CSEEEECTTTTSCEEEEEECSSTTCC-----EEEEEETTSE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCC-Cc---cceEEEeCCCCCCEEEEEEeeCCCCC-----EEEEEeCCCC
Confidence            4568899999999999886553 3555664433 11   345567777 46799999998  455     8999999999


Q ss_pred             EEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEc--CCeEEEEECCC
Q 038577          218 MFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFS--NGVFGLYQMPD  295 (860)
Q Consensus       218 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~g~i~~~~~~~  295 (860)
                      |++||+..+..                    ...........+..+.++|.+++|+++++++++++.  ++.+.+|+..+
T Consensus        89 i~iWd~~~~~~--------------------~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~  148 (325)
T d1pgua1          89 VIVWGWTFDKE--------------------SNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS  148 (325)
T ss_dssp             EEEEEEEEEGG--------------------GTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT
T ss_pred             EEEeeecCCcc--------------------eeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecc
Confidence            99999976432                    112222223345567889999999999999987765  57899999999


Q ss_pred             ceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEe---cCcccCeEEEEEcCC-CCEEEEEeCCC
Q 038577          296 FVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ---QGHYFDVNCLAYSPD-SQLLATGADDN  371 (860)
Q Consensus       296 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~---~~~~~~v~~~~~s~~-~~~l~~~~~dg  371 (860)
                      ++.+..+..|...+.+++|+|++..++++++.|+.+++||....+.....   ..|...|.+++|+|+ +.++++++.||
T Consensus       149 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~  228 (325)
T d1pgua1         149 GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR  228 (325)
T ss_dssp             CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC
T ss_pred             cccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccccc
Confidence            99999999999999999999999887776666799999999988776665   356778999999996 68899999999


Q ss_pred             cEEEEECCCCeeEEEeecCCCceEEEEEe---eCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCC-cEE--EEEECCC
Q 038577          372 KVKVWTVSSGFCFVTFTEHTNAVTALHFM---ANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSR-QFV--SLASDQS  445 (860)
Q Consensus       372 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~---~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~-~~~--~~~~~~~  445 (860)
                      .|++||+++++.+..+.+|..++.++.|+   |++++|++++.|+.|++||+.+++.++.+...... ...  ++.+.+ 
T Consensus       229 ~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  307 (325)
T d1pgua1         229 KISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG-  307 (325)
T ss_dssp             CEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEE-
T ss_pred             ceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECC-
Confidence            99999999999999999998888766665   68899999999999999999999998887754432 223  334433 


Q ss_pred             CCEEEEEecCCCeEEEEEC
Q 038577          446 GEVICAGTLDSFEIFVWSM  464 (860)
Q Consensus       446 ~~~l~~~~~~~~~i~v~d~  464 (860)
                      +.++++++.|+ .|++||+
T Consensus       308 ~~~l~s~s~dg-~i~vwdl  325 (325)
T d1pgua1         308 NGRIISLSLDG-TLNFYEL  325 (325)
T ss_dssp             TTEEEEEETTS-CEEEEET
T ss_pred             CCEEEEEECCC-EEEEEEC
Confidence            34778888887 9999996

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.1e-30  Score=256.89  Aligned_cols=280  Identities=18%  Similarity=0.255  Sum_probs=229.6

Q ss_pred             EEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEE
Q 038577          132 ELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYT  211 (860)
Q Consensus       132 ~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s  211 (860)
                      ++++.+.+|.++|++++|+|    |++|+.||+|++||+.+.           ..+|...|.++.++++.      .+++
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----------~~~h~~~V~~~~~~~~~------~~~s   62 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----------HQDHSNLIVSLDNSKAQ------EYSS   62 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----------ECCCCSCEEEEECCSTT------CCEE
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----------CCCCCCCEEEEEecCCC------eEEE
Confidence            36889999999999999987    999999999999998765           35799999999998765      6899


Q ss_pred             EcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEE
Q 038577          212 IARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLY  291 (860)
Q Consensus       212 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~  291 (860)
                      ++.|+++++|+.....                                   ....+.++.+++++..+++ ..++.+.+|
T Consensus        63 ~s~D~~v~~w~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  106 (287)
T d1pgua2          63 ISWDDTLKVNGITKHE-----------------------------------FGSQPKVASANNDGFTAVL-TNDDDLLIL  106 (287)
T ss_dssp             EETTTEEEETTEEEEE-----------------------------------CSSCEEEEEECSSSEEEEE-ETTSEEEEE
T ss_pred             Eeeccccccccccccc-----------------------------------cccceeeeeeccCCceEEE-eecccceee
Confidence            9999999999886521                                   2235677888888766665 556678899


Q ss_pred             ECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEec-CcccCeEEEEEcCCCCEEEEEeCC
Q 038577          292 QMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQ-GHYFDVNCLAYSPDSQLLATGADD  370 (860)
Q Consensus       292 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d  370 (860)
                      +..+++....+....   ...++++++..+++++.+++.+++|++.......... .|...+++++|+|++.+|++|+.|
T Consensus       107 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d  183 (287)
T d1pgua2         107 QSFTGDIIKSVRLNS---PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVM  183 (287)
T ss_dssp             ETTTCCEEEEEECSS---CEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eccceeeeeeccccc---eeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccccc
Confidence            998988888776543   3457888999999998887789999998776666554 477889999999999999999999


Q ss_pred             CcEEEEECCCCeeEE-EeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEE
Q 038577          371 NKVKVWTVSSGFCFV-TFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVI  449 (860)
Q Consensus       371 g~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  449 (860)
                      |.|++||+.++.... .+..|..+|.+++|+|.+.....                                 ..+++.++
T Consensus       184 g~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~---------------------------------~~~~~~~l  230 (287)
T d1pgua2         184 GKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANE---------------------------------EEIEEDLV  230 (287)
T ss_dssp             SCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC---------------------------------------CCSCCEE
T ss_pred             ccccceeecccccccccccccccccceeeeccccccccc---------------------------------ccCCCCee
Confidence            999999999888765 46789999999999987643222                                 23456778


Q ss_pred             EEEecCCCeEEEEECCC-CceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 038577          450 CAGTLDSFEIFVWSMKT-GRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNV  506 (860)
Q Consensus       450 ~~~~~~~~~i~v~d~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~  506 (860)
                      ++|+.|+ .|++||+++ ++.+..+.+|.+.|++++|+|++ .|++++.||.|++|++
T Consensus       231 ~sgs~D~-~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         231 ATGSLDT-NIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEETTS-CEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             EeecCCC-eEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            8888888 899999876 56777888999999999999986 6889999999999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=1.5e-30  Score=271.79  Aligned_cols=330  Identities=12%  Similarity=0.034  Sum_probs=245.6

Q ss_pred             EEEe--CCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCC--CcEEEEEcccCeEEEEeecC
Q 038577           18 AVLS--QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDEN--QRCHFINLHCHVVLHRVRFK   93 (860)
Q Consensus        18 ~~~s--dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d--~~i~vwd~~~~~~~~~~~~~   93 (860)
                      -.||  ||+++|++..+.|.+||+.+++...+  +|...|++++|||||++|++++.+  ..|.+||..+++......|.
T Consensus         8 ~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~   85 (360)
T d1k32a3           8 EDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENL   85 (360)
T ss_dssp             EEEEECGGGCEEEEETTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCC
T ss_pred             ccccCCCCCEEEEEECCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCC
Confidence            5688  99999999999999999999988765  699999999999999999987655  37999999999888777799


Q ss_pred             CceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEee----------cC
Q 038577           94 YPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGS----------KD  162 (860)
Q Consensus        94 ~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~----------~d  162 (860)
                      ..|.+++|+|||++|+++ .++.+++|+..+++       +...+..|...+.+++|+|||++|+.++          .+
T Consensus        86 ~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~  158 (360)
T d1k32a3          86 GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK-------PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM  158 (360)
T ss_dssp             CSEEEEEECTTSSEEEEEETTSEEEEEETTTCC-------EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCE
T ss_pred             ceEEeeeecccccccceeccccccccccccccc-------eeeeeecccccccchhhccceeeeeeeccccccceeeccc
Confidence            999999999999999998 78899999999887       4677788999999999999999998653          34


Q ss_pred             CeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCC
Q 038577          163 LAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSP  242 (860)
Q Consensus       163 g~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~  242 (860)
                      +.+++|+..++       ....+..|...+..+.|+|+++     +|++++.++.+.+|+..........          
T Consensus       159 ~~~~v~d~~~~-------~~~~~~~~~~~~~~~~~spdg~-----~l~~~s~~~~~~~~d~~~~~~~~~~----------  216 (360)
T d1k32a3         159 QAIHVYDMEGR-------KIFAATTENSHDYAPAFDADSK-----NLYYLSYRSLDPSPDRVVLNFSFEV----------  216 (360)
T ss_dssp             EEEEEEETTTT-------EEEECSCSSSBEEEEEECTTSC-----EEEEEESCCCCCEECSSSSCEECCS----------
T ss_pred             cceeeeccccC-------ceeeecccccccccccccCCCC-----EEEEEeCCCceEcccccccceeecc----------
Confidence            57999999876       3455667788899999999999     9999999999999987543210000          


Q ss_pred             CCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcC-----CeEEEEECCCceeEEEEeecCceeEEEEEeeC
Q 038577          243 GTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSN-----GVFGLYQMPDFVCIHLLSISREKITTAVFNEL  317 (860)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-----g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  317 (860)
                           ..+.+      ....+...+..+.+++++..++.+..+     ..+..++...+. ...+....+.+..+.+.+.
T Consensus       217 -----~~~~~------~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  284 (360)
T d1k32a3         217 -----VSKPF------VIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGD-YRMIIPLESSILIYSVPVH  284 (360)
T ss_dssp             -----CBEEE------EEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBC-EEEEEECSSEEEEEECCCC
T ss_pred             -----ccceE------EEecccCccccceECCCcCcccccceeecccccceeecccCcCc-eeEeeecCCCceEEEEEec
Confidence                 00011      111222333444556666555544332     123333333333 2333444455555555544


Q ss_pred             CCE--EEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCce
Q 038577          318 GNW--LVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAV  394 (860)
Q Consensus       318 ~~~--l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  394 (860)
                      +..  +++....++.+++||+.+++..    .|.+.|.+++|+|||++|++++.||.|++||++++....++..+..++
T Consensus       285 ~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~~  359 (360)
T d1k32a3         285 GEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL  359 (360)
T ss_dssp             CSHHHHHHCCCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSSCE
T ss_pred             CCCeeEEEecCCCCEEEEEECCCCeEE----EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEeccccc
Confidence            432  2223334589999999987653    344568999999999999999999999999999998887776665554

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2e-28  Score=257.98  Aligned_cols=326  Identities=14%  Similarity=0.132  Sum_probs=222.3

Q ss_pred             EEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEc---cCCCCCccceEE
Q 038577          134 IRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFS---VDKKTDKVNRIY  210 (860)
Q Consensus       134 ~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~---~~~~~~~~~~l~  210 (860)
                      .....+|.+.|.++++++  +++++++.|++|++||..................|...+..+...   +... .....++
T Consensus         7 ~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   83 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDA-FELCLVA   83 (393)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTT-EEEEEEE
T ss_pred             eecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCC-CCCcEEE
Confidence            355679999999999875  699999999999999987652222222333444566554443321   1110 1112678


Q ss_pred             EEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCC-----CCEEEEEEcC
Q 038577          211 TIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRG-----LDMVVVGFSN  285 (860)
Q Consensus       211 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~~  285 (860)
                      +++.||.+++|++..........                  ...........+...+..+++.++     +.++++++.|
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  145 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVI------------------FEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK  145 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEE------------------EEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT
T ss_pred             EEeCCCcEEEEEccCCCceeeee------------------ccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCC
Confidence            99999999999987654311100                  000011111223445667777665     4678899999


Q ss_pred             CeEEEEECCCceeEE-EEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEE
Q 038577          286 GVFGLYQMPDFVCIH-LLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLL  364 (860)
Q Consensus       286 g~i~~~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  364 (860)
                      |.+.+|++....... ....+..                     ....+     .........+...+.+++|+|++ +|
T Consensus       146 g~i~vw~~~~~~~~~~~~~~~~~---------------------~~~~~-----~~~~~~~~~~~~~~~~v~~s~dg-~l  198 (393)
T d1sq9a_         146 GTTYIWKFHPFADESNSLTLNWS---------------------PTLEL-----QGTVESPMTPSQFATSVDISERG-LI  198 (393)
T ss_dssp             SCEEEEEEESSSSHHHHTTTCCC---------------------CEEEE-----EEEECCSSSSCCCCCEEEECTTS-EE
T ss_pred             CcEEEEEeecCCcccceeeeeec---------------------cceec-----ccceecccCCCCcEEEEEECCCC-EE
Confidence            999999974321100 0000000                     00000     00111123456668999999998 89


Q ss_pred             EEEeCCCcEEEEECCCCeeEEEe------ecCCCceEEEEEeeCCCEEEEEeCCCc---EEEEEccccceeeEeeCCCCC
Q 038577          365 ATGADDNKVKVWTVSSGFCFVTF------TEHTNAVTALHFMANNHSLLSASLDGT---VRAWDLFRYRNFRTFTTPSSR  435 (860)
Q Consensus       365 ~~~~~dg~i~iwd~~~~~~~~~~------~~~~~~v~~i~~~~~~~~l~s~~~dg~---i~~wd~~~~~~~~~~~~~~~~  435 (860)
                      ++|+.||.|++||+.+++.+..+      .+|..+|.+++|+|++++|++|+.|++   |++||+.+++.+..+..... 
T Consensus       199 asgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~-  277 (393)
T d1sq9a_         199 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH-  277 (393)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC---
T ss_pred             EEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccc-
Confidence            99999999999999999887654      468899999999999999999999875   89999988776655543221 


Q ss_pred             cEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEE
Q 038577          436 QFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVES  515 (860)
Q Consensus       436 ~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  515 (860)
                                                    .......+.+|.+.|++++|+|++++|++++.|++|++||+.+++++..+
T Consensus       278 ------------------------------~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l  327 (393)
T d1sq9a_         278 ------------------------------SSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL  327 (393)
T ss_dssp             ------------------------------------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ------------------------------cccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEE
Confidence                                          12334456689999999999999999999999999999999999988888


Q ss_pred             cccCCCeE----EEEEeeCCCEEEEEe
Q 038577          516 FPHTHDVL----TVVYRPDGRQLACST  538 (860)
Q Consensus       516 ~~~~~~v~----~~~~s~~~~~l~~~~  538 (860)
                      .+|...|.    .++|+|++..+++++
T Consensus       328 ~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         328 NMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             ECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             CCcCCcccCCccEEEECCCCCEEEEcc
Confidence            89988775    488999998876553

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.97  E-value=1.2e-29  Score=268.63  Aligned_cols=379  Identities=11%  Similarity=0.015  Sum_probs=267.5

Q ss_pred             cCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCccccee
Q 038577           53 SNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAF  131 (860)
Q Consensus        53 ~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~  131 (860)
                      ......+.+++.-++++.+.+|+|.|||..+++++..+.....+..++|||||++++++ .|+.+.+||+.+++...  .
T Consensus        21 ~~~~~~~~~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~--~   98 (432)
T d1qksa2          21 PTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT--V   98 (432)
T ss_dssp             CSSCCSCCCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE--E
T ss_pred             CCceeecCCCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceE--E
Confidence            33344444555445688899999999999999999999966789999999999999988 68999999998876321  1


Q ss_pred             EEEEEeeccCCCeEEEEEcCCCCeE-EEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEE
Q 038577          132 ELIRTLADCNDKVTALNWSPDSNYL-LVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIY  210 (860)
Q Consensus       132 ~~~~~~~~h~~~v~~l~~s~d~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~  210 (860)
                      ..+....+|.+.+.+.+|+|||++| ++++.++.|++||..++      .....+..|...+....+.++          
T Consensus        99 ~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~------~~~~~~~~~~~~~~~~~~~~~----------  162 (432)
T d1qksa2          99 AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL------EPKKIQSTRGMTYDEQEYHPE----------  162 (432)
T ss_dssp             EEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC------CEEEEEECCEECTTTCCEESC----------
T ss_pred             EEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccc------cceeeeccCCccccceeccCC----------
Confidence            1123334667777788899999986 67888999999999887      444555444333322222222          


Q ss_pred             EEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEE-EEcCCeEE
Q 038577          211 TIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVV-GFSNGVFG  289 (860)
Q Consensus       211 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~g~i~  289 (860)
                                                                            .....+.++|++..+++ ...++.|.
T Consensus       163 ------------------------------------------------------~~~~~v~~s~dg~~~~vs~~~~~~i~  188 (432)
T d1qksa2         163 ------------------------------------------------------PRVAAILASHYRPEFIVNVKETGKIL  188 (432)
T ss_dssp             ------------------------------------------------------CCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             ------------------------------------------------------CceeEEEECCCCCEEEEEEccCCeEE
Confidence                                                                  23455667777776654 44568889


Q ss_pred             EEECCCceeEEEEee-cCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecC-----cccCeEEEEEcCCCCE
Q 038577          290 LYQMPDFVCIHLLSI-SREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQG-----HYFDVNCLAYSPDSQL  363 (860)
Q Consensus       290 ~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~  363 (860)
                      +|+..+.+....... ....+..++|+|+|+++++++..++.+.++|..+++.......     |........+...+..
T Consensus       189 ~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~  268 (432)
T d1qksa2         189 LVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPV  268 (432)
T ss_dssp             EEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEE
T ss_pred             EEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCce
Confidence            998887766554443 3346789999999999999999889999999999888776532     3334445555555544


Q ss_pred             EEEEe-CCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEE
Q 038577          364 LATGA-DDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLAS  442 (860)
Q Consensus       364 l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  442 (860)
                      .++.. .++.|.+|+.....    ...|...+....++|++..+++++.+...++|+..+                    
T Consensus       269 ~~~~~lg~~~v~~~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~--------------------  324 (432)
T d1qksa2         269 WATSHMGDDSVALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDAT--------------------  324 (432)
T ss_dssp             EEEEBSSSSEEEEEECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECT--------------------
T ss_pred             ecccccCCceEEeccccccc----ccccccEEEEEEEcCCCCeEEEEecCCccceeeccc--------------------
Confidence            44443 26677788765432    234555667777777776677776666666665321                    


Q ss_pred             CCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCe
Q 038577          443 DQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDV  522 (860)
Q Consensus       443 ~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v  522 (860)
                                              ..      .|.....++++ ||++.+++++.|+.+++|++.++..   +..|...+
T Consensus       325 ------------------------~~------~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~---l~~~~~~v  370 (432)
T d1qksa2         325 ------------------------LN------PEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAG---ITEGQPRV  370 (432)
T ss_dssp             ------------------------TC------SSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHT---CCSSCCEE
T ss_pred             ------------------------CC------CCCCeeeEEEE-EechhhcccccCCceEecccccccc---cCCCCCcE
Confidence                                    11      12222334454 7999999999999999999865532   23567789


Q ss_pred             EEEEEeeCCCEEEEEe-----CCCeEEEEeCCCCceeEEEeccc
Q 038577          523 LTVVYRPDGRQLACST-----LDGQIHFWDPLNGELMYTIEGRR  561 (860)
Q Consensus       523 ~~~~~s~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~  561 (860)
                      .+++|||||++++++.     .+|.|.|||..++++...+++..
T Consensus       371 ~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~~  414 (432)
T d1qksa2         371 VQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDER  414 (432)
T ss_dssp             EEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred             EEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCCC
Confidence            9999999999886653     47889999999999988887753

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=9.8e-29  Score=248.45  Aligned_cols=271  Identities=15%  Similarity=0.167  Sum_probs=221.4

Q ss_pred             ceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 038577          296 FVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKV  375 (860)
Q Consensus       296 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  375 (860)
                      .+.++++++|..+|++++|+|    |++++. ||.|++||..++.     ..|...|.++++++++ .+++++.|+++++
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~-Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~   71 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP----LISGSY-DGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQ-EYSSISWDDTLKV   71 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT----TEEEET-TSCEEETTTTEEE-----CCCCSCEEEEECCSTT-CCEEEETTTEEEE
T ss_pred             cceeEEECCCCCceEEEEECc----EEEEeC-CCeEEEEECCCCC-----CCCCCCEEEEEecCCC-eEEEEeecccccc
Confidence            467889999999999999987    666655 5999999987643     5899999999998765 6789999999999


Q ss_pred             EECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecC
Q 038577          376 WTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLD  455 (860)
Q Consensus       376 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  455 (860)
                      |+....       .....+..+.+.+++..+++ +.++.+.+|+..+++....+....    ...++++++..+++++.+
T Consensus        72 w~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~  139 (287)
T d1pgua2          72 NGITKH-------EFGSQPKVASANNDGFTAVL-TNDDDLLILQSFTGDIIKSVRLNS----PGSAVSLSQNYVAVGLEE  139 (287)
T ss_dssp             TTEEEE-------ECSSCEEEEEECSSSEEEEE-ETTSEEEEEETTTCCEEEEEECSS----CEEEEEECSSEEEEEETT
T ss_pred             cccccc-------ccccceeeeeeccCCceEEE-eecccceeeeccceeeeeeccccc----eeeeeeccCcceeeeccc
Confidence            986532       23456778888888866555 456678999999888887776543    234667788899999988


Q ss_pred             CCeEEEEECCCCceEEEec-CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeE-EcccCCCeEEEEEeeC---
Q 038577          456 SFEIFVWSMKTGRLLDILS-GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVE-SFPHTHDVLTVVYRPD---  530 (860)
Q Consensus       456 ~~~i~v~d~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~---  530 (860)
                      ++.+++|++...+....+. .|.+++++++|+|++.+|++++.||.|++||+.+++.... ...|...|.+++|+|+   
T Consensus       140 ~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  219 (287)
T d1pgua2         140 GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG  219 (287)
T ss_dssp             TSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC--
T ss_pred             cceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccc
Confidence            7789999998776655554 4788999999999999999999999999999998875443 4478999999999874   


Q ss_pred             -------CCEEEEEeCCCeEEEEeCCC-CceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCC
Q 038577          531 -------GRQLACSTLDGQIHFWDPLN-GELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSS  602 (860)
Q Consensus       531 -------~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d  602 (860)
                             +.++++|+.|+.|++||+.+ ++.+..+.+|..                    .|++++|+|++ .|++++.|
T Consensus       220 ~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~--------------------~V~~v~~~~~~-~l~s~g~D  278 (287)
T d1pgua2         220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD--------------------GVNNLLWETPS-TLVSSGAD  278 (287)
T ss_dssp             ----CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT--------------------CEEEEEEEETT-EEEEEETT
T ss_pred             cccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCC--------------------CeEEEEECCCC-EEEEEECC
Confidence                   56899999999999999977 455565666654                    59999999987 58899999


Q ss_pred             CeEEEEEC
Q 038577          603 KYICMYDV  610 (860)
Q Consensus       603 g~v~vwd~  610 (860)
                      |.|++|++
T Consensus       279 ~~v~iW~i  286 (287)
T d1pgua2         279 ACIKRWNV  286 (287)
T ss_dssp             SCEEEEEE
T ss_pred             CeEEEEEE
Confidence            99999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=5.7e-29  Score=259.63  Aligned_cols=319  Identities=13%  Similarity=0.072  Sum_probs=248.9

Q ss_pred             EEEecC-CCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCC-cEEEEEccCceEEEEec
Q 038577          269 ACDYHR-GLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLG-QLLVWEWRSESYILKQQ  346 (860)
Q Consensus       269 ~~~~~~-~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g-~i~v~d~~~~~~~~~~~  346 (860)
                      ...|+| ||+++++++ .|.|++|+...+...+.  .|...+.+++|+|||+.|++++.+++ .+++||.++++.. .+.
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~   82 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFE   82 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECC
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-Eee
Confidence            356999 999998875 57999999988776653  57889999999999999998887654 6899999887655 566


Q ss_pred             CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEe----------CCCcEE
Q 038577          347 GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSAS----------LDGTVR  416 (860)
Q Consensus       347 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~----------~dg~i~  416 (860)
                      .|...+.+++|+|+|++|++++.++.+++|+..++.....+..|...+.+++|+|+|++|+.++          .++.++
T Consensus        83 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~  162 (360)
T d1k32a3          83 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH  162 (360)
T ss_dssp             CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEE
T ss_pred             CCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecccccee
Confidence            8999999999999999999999999999999999999999999999999999999999998654          344689


Q ss_pred             EEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCce-------EEEecCcccCeEEEEEcCCC
Q 038577          417 AWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRL-------LDILSGHEGPVHGLVFSPTN  489 (860)
Q Consensus       417 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~-------~~~~~~h~~~v~~l~~s~~~  489 (860)
                      +|++.+++......  .......++++|+|+.|++++.++ .+.+||......       ...+..|...+..+.|++++
T Consensus       163 v~d~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~s~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  239 (360)
T d1k32a3         163 VYDMEGRKIFAATT--ENSHDYAPAFDADSKNLYYLSYRS-LDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRS  239 (360)
T ss_dssp             EEETTTTEEEECSC--SSSBEEEEEECTTSCEEEEEESCC-CCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGG
T ss_pred             eeccccCceeeecc--cccccccccccCCCCEEEEEeCCC-ceEcccccccceeeccccceEEEecccCccccceECCCc
Confidence            99998876554433  344678899999999999999888 899999765432       23344556666667788887


Q ss_pred             CEEEEEeCCCc-----EEEEEccCCcceeEEcccCCCeEEEEEeeCC---CEEEEEeCCCeEEEEeCCCCceeEEEeccc
Q 038577          490 ATLASSSWDKT-----VRLWNVFEGKGSVESFPHTHDVLTVVYRPDG---RQLACSTLDGQIHFWDPLNGELMYTIEGRR  561 (860)
Q Consensus       490 ~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  561 (860)
                      ..++++..+..     +..+++..+. ...+..+...+..+.+.+.+   .++++++.++.|++||+.+++... +.+  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~--  315 (360)
T d1k32a3         240 MTSEAGEYDLNDMYKRSSPINVDPGD-YRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-VKN--  315 (360)
T ss_dssp             GSCCCCCCCCTTGGGGCEECSCCCBC-EEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE-EEE--
T ss_pred             CcccccceeecccccceeecccCcCc-eeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEE-ecC--
Confidence            77766554422     3333333333 33344455556666655544   467888889999999998876532 211  


Q ss_pred             ccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEE
Q 038577          562 DISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRF  619 (860)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~  619 (860)
                                           .|.+++|||||++|++++.||.|++||+++++..+.+
T Consensus       316 ---------------------~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~  352 (360)
T d1k32a3         316 ---------------------NLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV  352 (360)
T ss_dssp             ---------------------EEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEEC
T ss_pred             ---------------------CcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEE
Confidence                                 3899999999999999999999999999998766544

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.3e-27  Score=237.04  Aligned_cols=275  Identities=24%  Similarity=0.365  Sum_probs=222.0

Q ss_pred             EEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 038577          299 IHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTV  378 (860)
Q Consensus       299 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  378 (860)
                      +.....+...|+++  +++|++|++++.+ |.|++||+.+++.+..+.+|...|.+++|  ++++|++|+.|+.|++|++
T Consensus         8 i~~~~~~~~~V~c~--~~d~~~l~sgs~D-g~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~   82 (293)
T d1p22a2           8 IHCRSETSKGVYCL--QYDDQKIVSGLRD-NTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV   82 (293)
T ss_dssp             EECCCSSCCCEEEE--ECCSSEEEEEESS-SCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred             EeccCCCCCCEEEE--EEcCCEEEEEeCC-CeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccc
Confidence            33344556678775  4589998888776 99999999999999999999999999887  6789999999999999999


Q ss_pred             CCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEe--eCCCCCcEEEEEECCCCCEEEEEecCC
Q 038577          379 SSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTF--TTPSSRQFVSLASDQSGEVICAGTLDS  456 (860)
Q Consensus       379 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~  456 (860)
                      ..+........+.....  .+.+....++++..++.+.+|+..........  ...+...+....+  ....+++++.|+
T Consensus        83 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~d~  158 (293)
T d1p22a2          83 NTGEMLNTLIHHCEAVL--HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDR  158 (293)
T ss_dssp             SSCCEEEEECCCCSCEE--EEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTS
T ss_pred             ccccccccccccccccc--cccccccceeecccccceeEeecccccccccccccccccccccccee--cccccccccCCC
Confidence            99988877765554443  34456668999999999999999876543332  2334445555554  456777888888


Q ss_pred             CeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEE
Q 038577          457 FEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLAC  536 (860)
Q Consensus       457 ~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  536 (860)
                       .+++||+++++.+..+.+|...+..+.++  +.++++++.||.|++||+.+.........+...+..  +++++.+|++
T Consensus       159 -~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~s  233 (293)
T d1p22a2         159 -TIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVS  233 (293)
T ss_dssp             -EEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEE
T ss_pred             -ceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEE
Confidence             99999999999999999999999888775  568999999999999999999877777778877764  5678899999


Q ss_pred             EeCCCeEEEEeCCC---------CceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEE
Q 038577          537 STLDGQIHFWDPLN---------GELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICM  607 (860)
Q Consensus       537 ~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~v  607 (860)
                      ++.||.|++||+.+         ...+..+.+|..                    .|++++|  ++++|++++.||+|++
T Consensus       234 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~--------------------~V~~v~~--d~~~l~s~s~Dg~i~i  291 (293)
T d1p22a2         234 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--------------------RVFRLQF--DEFQIVSSSHDDTILI  291 (293)
T ss_dssp             EETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--------------------CCCCEEE--CSSCEEECCSSSEEEE
T ss_pred             EcCCCEEEEEECCCCccccccCCceeeEEecCCCC--------------------CEEEEEE--cCCEEEEEecCCEEEE
Confidence            99999999999643         234556666654                    5888888  5789999999999999


Q ss_pred             EE
Q 038577          608 YD  609 (860)
Q Consensus       608 wd  609 (860)
                      ||
T Consensus       292 WD  293 (293)
T d1p22a2         292 WD  293 (293)
T ss_dssp             EC
T ss_pred             eC
Confidence            97

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.96  E-value=2e-27  Score=252.92  Aligned_cols=361  Identities=9%  Similarity=0.058  Sum_probs=256.5

Q ss_pred             eeEEEEcCCCC--EEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCccccee
Q 038577           55 ICRIAVSPDGT--FLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAF  131 (860)
Q Consensus        55 v~~va~spdg~--~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~  131 (860)
                      ...+.+++|.+  ++++.+.||+|.|||+.+++.+.+++....+..++|||||++|+++ .|+.|++||+.+++...  .
T Consensus        21 p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~--~   98 (426)
T d1hzua2          21 PKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK--V   98 (426)
T ss_dssp             CSSCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE--E
T ss_pred             CCcccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeE--E
Confidence            33445666644  4577888999999999999999999977789999999999999988 68999999999887421  1


Q ss_pred             EEEEEeeccCCCeEEEEEcCCCCeEEEe-ecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEE
Q 038577          132 ELIRTLADCNDKVTALNWSPDSNYLLVG-SKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIY  210 (860)
Q Consensus       132 ~~~~~~~~h~~~v~~l~~s~d~~~l~s~-~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~  210 (860)
                      ..+....+|.+.+.+++|+|||++++++ ..++.+++||..+.      .....+.+|...+....+.+++..    ..+
T Consensus        99 ~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~----~~i  168 (426)
T d1hzua2          99 AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL------EPKQIVSTRGMTVDTQTYHPEPRV----AAI  168 (426)
T ss_dssp             EEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC------CEEEEEECCEECSSSCCEESCCCE----EEE
T ss_pred             EEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcc------ceeEEeeccCCCccceeecCCCce----eEE
Confidence            1123334677778888999999987554 57899999999988      556667777666666666666541    233


Q ss_pred             EEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEE
Q 038577          211 TIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGL  290 (860)
Q Consensus       211 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~  290 (860)
                      ..+.|+...++....                                                           .+.+.+
T Consensus       169 ~~s~d~~~~~~~~~~-----------------------------------------------------------~~~i~~  189 (426)
T d1hzua2         169 IASHEHPEFIVNVKE-----------------------------------------------------------TGKVLL  189 (426)
T ss_dssp             EECSSSSEEEEEETT-----------------------------------------------------------TTEEEE
T ss_pred             EECCCCCEEEEecCC-----------------------------------------------------------CCeEEE
Confidence            444444443333221                                                           233444


Q ss_pred             EECCCceeE-EEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecC--cccCeEEEEEcCCCC--EE-
Q 038577          291 YQMPDFVCI-HLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQG--HYFDVNCLAYSPDSQ--LL-  364 (860)
Q Consensus       291 ~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~--~l-  364 (860)
                      ++..+.... .........+..+.|+|++++++++...+..+.+++..+++.......  +........+...+.  .. 
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (426)
T d1hzua2         190 VNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWS  269 (426)
T ss_dssp             EECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEE
T ss_pred             EEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEE
Confidence            444333322 222345567889999999999999999889999999999988776632  222222333333322  12 


Q ss_pred             EEEeCCCcEEEEECCC-------CeeEEEeecCCCceEEEEEeeCCCEEEE-------EeCCCcEEEEEccccceeeEee
Q 038577          365 ATGADDNKVKVWTVSS-------GFCFVTFTEHTNAVTALHFMANNHSLLS-------ASLDGTVRAWDLFRYRNFRTFT  430 (860)
Q Consensus       365 ~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~s-------~~~dg~i~~wd~~~~~~~~~~~  430 (860)
                      +..+.|+.+.+|+...       ++....+.+|...+..++|+|++++|++       ++.|++|++||+.+++...++.
T Consensus       270 ~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~  349 (426)
T d1hzua2         270 TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVL  349 (426)
T ss_dssp             EECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEE
T ss_pred             eccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEe
Confidence            2234577787877653       4778889999999999999999999994       4567899999999988765543


Q ss_pred             --------CCCCCcEEEEEECCCCCEEEEEe----cCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEE
Q 038577          431 --------TPSSRQFVSLASDQSGEVICAGT----LDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATL  492 (860)
Q Consensus       431 --------~~~~~~~~~~~~~~~~~~l~~~~----~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l  492 (860)
                              ......+.+++|||||++++++.    .+.+.|.+||.++++....+.++.      .++|+|++-
T Consensus       350 ~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~  417 (426)
T d1hzua2         350 PIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFN  417 (426)
T ss_dssp             CHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEE
T ss_pred             ccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEe
Confidence                    13345688999999999886543    223489999999999999988765      345676653

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.5e-27  Score=249.55  Aligned_cols=328  Identities=13%  Similarity=0.075  Sum_probs=231.0

Q ss_pred             eeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCe-------EEEEeecCCceeEEE------ECC-CCCEEEEE
Q 038577           46 TLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHV-------VLHRVRFKYPVNAIL------FSP-NGKYIAVG  111 (860)
Q Consensus        46 ~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~-------~~~~~~~~~~v~~~~------fsp-dg~~la~~  111 (860)
                      ....+|.+.|.++++++  +++++++.|++|+|||..+..       ......+...+..+.      .++ ++.+++++
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            44569999999999875  689999999999999976542       333333444433222      222 33456666


Q ss_pred             -eCCeEEEEeCCCCCcccceeE-EEEE--eeccCCCeEEEEEcCC-----CCeEEEeecCCeEEEEeecccccCcc----
Q 038577          112 -TGKLVQIWRSPGFKKEVFAFE-LIRT--LADCNDKVTALNWSPD-----SNYLLVGSKDLAVRLFYVKEKLKGIH----  178 (860)
Q Consensus       112 -~~~~i~iwd~~~~~~~~~~~~-~~~~--~~~h~~~v~~l~~s~d-----~~~l~s~~~dg~v~vwd~~~~~~~~~----  178 (860)
                       .|+.|++|++........... ....  ...+...+..++|.++     +.++++++.||.+++|++........    
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence             689999999765443211110 0011  1234566788888775     46889999999999999864311000    


Q ss_pred             --------cccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceee
Q 038577          179 --------TNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVK  250 (860)
Q Consensus       179 --------~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (860)
                              .........+...+.+++|+|++      +|++++.|++|++||+.++..                      
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg------~lasgs~Dg~i~iwd~~~~~~----------------------  217 (393)
T d1sq9a_         166 NWSPTLELQGTVESPMTPSQFATSVDISERG------LIATGFNNGTVQISELSTLRP----------------------  217 (393)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTTS------EEEEECTTSEEEEEETTTTEE----------------------
T ss_pred             eeccceecccceecccCCCCcEEEEEECCCC------EEEEEeCCCcEEEEeeccccc----------------------
Confidence                    00111223456678899999987      799999999999999987532                      


Q ss_pred             eEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCC---eEEEEECCCceeEEEEe-------------ecCceeEEEEE
Q 038577          251 KWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNG---VFGLYQMPDFVCIHLLS-------------ISREKITTAVF  314 (860)
Q Consensus       251 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g---~i~~~~~~~~~~~~~~~-------------~~~~~i~~~~~  314 (860)
                      .........+.+|...|.+++|+|++++|++|+.|+   .|++||+.+++.+..+.             +|...|.+++|
T Consensus       218 ~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~f  297 (393)
T d1sq9a_         218 LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF  297 (393)
T ss_dssp             EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEE
T ss_pred             ccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeecc
Confidence            233334556678899999999999999999999886   59999999998887764             57889999999


Q ss_pred             eeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeE----EEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecC
Q 038577          315 NELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVN----CLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEH  390 (860)
Q Consensus       315 s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~----~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  390 (860)
                      +|++++|++++.+ ++|++||+++++.+..+.+|...|.    .++|+|++..+++++.   ..++....+...      
T Consensus       298 spd~~~l~S~s~D-~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~------  367 (393)
T d1sq9a_         298 NDSGETLCSAGWD-GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV---FDVKFLKKGWRS------  367 (393)
T ss_dssp             CSSSSEEEEEETT-SEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCE---EEEEEECTTTSB------
T ss_pred             CCCCCeeEEECCC-CEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEccc---ceEEECccCcee------
Confidence            9999999988776 9999999999999999999998876    4789999988765432   222222221100      


Q ss_pred             CCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 038577          391 TNAVTALHFMANNHSLLSASLDGTVRAWD  419 (860)
Q Consensus       391 ~~~v~~i~~~~~~~~l~s~~~dg~i~~wd  419 (860)
                        ..    .......+++++.|+.|++|.
T Consensus       368 --~~----~~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         368 --GM----GADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             --ST----TCTTSCEEEEEETTTEEEEEE
T ss_pred             --cc----ccCCCCEEEEEEcCCeEEEEe
Confidence              00    011234688999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.7e-28  Score=251.06  Aligned_cols=310  Identities=14%  Similarity=0.125  Sum_probs=219.6

Q ss_pred             cEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCe----EEEEeecCCceeEEEECCCC-CEEEEE-eCCeE
Q 038577           43 KTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHV----VLHRVRFKYPVNAILFSPNG-KYIAVG-TGKLV  116 (860)
Q Consensus        43 ~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~----~~~~~~~~~~v~~~~fspdg-~~la~~-~~~~i  116 (860)
                      +.+.+..+|+..|++|+|||+|++||+++.||+|+|||+.++.    ......|..+|.+++|+|++ .+|++| .|+.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            3456777999999999999999999999999999999997653    34444599999999999875 577777 78999


Q ss_pred             EEEeCCCCCcccceeEEEEEee-ccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecC--CCcEE
Q 038577          117 QIWRSPGFKKEVFAFELIRTLA-DCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGH--RDSVV  193 (860)
Q Consensus       117 ~iwd~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h--~~~i~  193 (860)
                      ++|+......       ..... .+........+.+++..+++++.++.+++||+.......  ........+  .....
T Consensus        82 ~~w~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~--~~~~~~~~~~~~~~~~  152 (342)
T d1yfqa_          82 LKVDLIGSPS-------FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGV--IAVKNLNSNNTKVKNK  152 (342)
T ss_dssp             EEECSSSSSS-------EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBC--EEEEESCSSSSSSCCC
T ss_pred             eeeecccccc-------cccccccccccccccccccccccccccccccccceeeccccccce--eeecccccccccceee
Confidence            9999988764       23333 334445566677788999999999999999997761110  111122222  23344


Q ss_pred             EEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEE-e
Q 038577          194 GCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACD-Y  272 (860)
Q Consensus       194 ~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~  272 (860)
                      ...+.+++.     .+++++.|+.+++|++.......                    .     ..........+.+.. +
T Consensus       153 ~~~~~~~~~-----~~~~~~~d~~i~~~~~~~~~~~~--------------------~-----~~~~~~~~~~~~~~~~~  202 (342)
T d1yfqa_         153 IFTMDTNSS-----RLIVGMNNSQVQWFRLPLCEDDN--------------------G-----TIEESGLKYQIRDVALL  202 (342)
T ss_dssp             EEEEEECSS-----EEEEEESTTEEEEEESSCCTTCC--------------------C-----EEEECSCSSCEEEEEEC
T ss_pred             eeeeeccCC-----ceeeecCCCcEEEEecccCcccc--------------------e-----eeeecccccceeeeEee
Confidence            566777777     99999999999999987654310                    0     011112223344444 4


Q ss_pred             cCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCe
Q 038577          273 HRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDV  352 (860)
Q Consensus       273 ~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v  352 (860)
                      ..++..+++++.+|.+.+|+...........                          ....+..  .........|...+
T Consensus       203 ~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~--------------------------~~~~~~~--~~~~~~~~~~~~~v  254 (342)
T d1yfqa_         203 PKEQEGYACSSIDGRVAVEFFDDQGDDYNSS--------------------------KRFAFRC--HRLNLKDTNLAYPV  254 (342)
T ss_dssp             SGGGCEEEEEETTSEEEEEECCTTCCSTTCT--------------------------TCEEEEC--CCCCTTCCSSCCCE
T ss_pred             cCCCCEEEeecCCCeEEEEEecCCcceeecc--------------------------ccceeee--eeeccCCCcccccc
Confidence            4567788999999999999875432211000                          0000000  00001124577789


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 038577          353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDL  420 (860)
Q Consensus       353 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~  420 (860)
                      ++++|+|++++|++|+.||.|++||+.+++.+..+..+ ..+..++|+|+++.+++++.|+.+++|..
T Consensus       255 ~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         255 NSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred             eeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence            99999999999999999999999999999999888643 34566788899999999999988877764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.96  E-value=1.2e-27  Score=253.09  Aligned_cols=383  Identities=8%  Similarity=-0.063  Sum_probs=276.1

Q ss_pred             cCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCC
Q 038577          150 SPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGK  229 (860)
Q Consensus       150 s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~  229 (860)
                      +++.-++++.+.||.|.|||..++      .....+..+ ..+..++|+|||+     ++++++.|+++++||+.++...
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~------~v~~~~~~g-~~~~~v~fSpDG~-----~l~~~s~dg~v~~~d~~t~~~~   96 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTY------EIKTVLDTG-YAVHISRLSASGR-----YLFVIGRDGKVNMIDLWMKEPT   96 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTC------CEEEEEECS-SCEEEEEECTTSC-----EEEEEETTSEEEEEETTSSSCC
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCC------cEEEEEeCC-CCeeEEEECCCCC-----EEEEEcCCCCEEEEEeeCCCce
Confidence            334344688899999999999998      667777766 4689999999999     9999999999999999875431


Q ss_pred             CccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEE-EEEEcCCeEEEEECCCceeEEEEeecCce
Q 038577          230 IDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMV-VVGFSNGVFGLYQMPDFVCIHLLSISREK  308 (860)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~g~i~~~~~~~~~~~~~~~~~~~~  308 (860)
                      ..                       ........+.+.+.+..|+|||+++ +++..++.+.+||..+++.+..+..+...
T Consensus        97 ~~-----------------------~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~  153 (432)
T d1qksa2          97 TV-----------------------AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT  153 (432)
T ss_dssp             EE-----------------------EEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC
T ss_pred             EE-----------------------EEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCcc
Confidence            00                       0011112333455666788999986 57888999999999999888877665433


Q ss_pred             eEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeeEEEe
Q 038577          309 ITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLA-TGADDNKVKVWTVSSGFCFVTF  387 (860)
Q Consensus       309 i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~  387 (860)
                      +....+.+                                ......+.++|+|..++ +...++.|.+|+..+++.....
T Consensus       154 ~~~~~~~~--------------------------------~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~  201 (432)
T d1qksa2         154 YDEQEYHP--------------------------------EPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTT  201 (432)
T ss_dssp             TTTCCEES--------------------------------CCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEE
T ss_pred             ccceeccC--------------------------------CCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEE
Confidence            33333332                                23345677888888764 5566789999999887655433


Q ss_pred             e-cCCCceEEEEEeeCCCEEEEEeC-CCcEEEEEccccceeeEeeCCC----CCcEEEEEECCCCCEEEEEecCCCeEEE
Q 038577          388 T-EHTNAVTALHFMANNHSLLSASL-DGTVRAWDLFRYRNFRTFTTPS----SRQFVSLASDQSGEVICAGTLDSFEIFV  461 (860)
Q Consensus       388 ~-~~~~~v~~i~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~i~v  461 (860)
                      . .+...+.+++|+|+|+++++++. ++.+.++|..+.+....+....    ............+...+......+.+.+
T Consensus       202 ~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~  281 (432)
T d1qksa2         202 EISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVAL  281 (432)
T ss_dssp             EEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEE
T ss_pred             EEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEe
Confidence            3 45667899999999998777765 4578899998888777765432    2234455556666666555543348999


Q ss_pred             EECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCC
Q 038577          462 WSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDG  541 (860)
Q Consensus       462 ~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  541 (860)
                      |+.....    ...|...+....++|++..+++++.+...++|+......      |.....++++ ||++.+++++.|+
T Consensus       282 ~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~------~~~~~~sv~v-pDg~~la~~s~d~  350 (432)
T d1qksa2         282 IGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNP------EAEISGSVAV-FDIKAMTGDGSDP  350 (432)
T ss_dssp             EECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCS------SHHHHTCEEE-EEGGGCCCSSSCC
T ss_pred             ccccccc----ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCC------CCCeeeEEEE-EechhhcccccCC
Confidence            9876543    345777899999999999999999999999998765432      2222334454 8999999999999


Q ss_pred             eEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEec-----CCCeEEEEECCCceEE
Q 038577          542 QIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGG-----SSKYICMYDVADQVLL  616 (860)
Q Consensus       542 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~-----~dg~v~vwd~~~~~~~  616 (860)
                      .+++|++.++..+.   .+                    ...+.+++|||||++++.+.     .+|.|.|||..++++.
T Consensus       351 ~~k~w~~~~~~~l~---~~--------------------~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~  407 (432)
T d1qksa2         351 EFKTLPIAEWAGIT---EG--------------------QPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELK  407 (432)
T ss_dssp             CEEEECHHHHHTCC---SS--------------------CCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred             ceEecccccccccC---CC--------------------CCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEE
Confidence            99999976553322   12                    12588999999999886553     4689999999999998


Q ss_pred             EEEeecccccccceeee
Q 038577          617 RRFQITHNLSLDGVIDF  633 (860)
Q Consensus       617 ~~~~~~~~~~~~~~~~~  633 (860)
                      +.+....-..+.|..-+
T Consensus       408 ~~i~~~~~~tp~G~~~~  424 (432)
T d1qksa2         408 HVIKDERLVTPTGKFNV  424 (432)
T ss_dssp             EEECCTTCCSEEEEEEH
T ss_pred             eEecCCCccCCCeeEEE
Confidence            88776554445554433

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.6e-27  Score=244.55  Aligned_cols=273  Identities=12%  Similarity=0.124  Sum_probs=204.9

Q ss_pred             EEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE---EEeecCCCceEEEEEeeCC-CEEEEEeCCCcEE
Q 038577          341 YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCF---VTFTEHTNAVTALHFMANN-HSLLSASLDGTVR  416 (860)
Q Consensus       341 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~  416 (860)
                      .+...++|...|++++|+|++++||+|+.||+|++||+.++...   ....+|..+|.+++|+|++ ..|++|+.||.++
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            34455789999999999999999999999999999999765432   3334699999999999875 5789999999999


Q ss_pred             EEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEE----EecCc--ccCeEEEEEcCCCC
Q 038577          417 AWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLD----ILSGH--EGPVHGLVFSPTNA  490 (860)
Q Consensus       417 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~----~~~~h--~~~v~~l~~s~~~~  490 (860)
                      +|++.......................++...+++++.++ .+++||++++....    ....+  ........+.+++.
T Consensus        83 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
T d1yfqa_          83 KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDG-LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             EECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTS-EEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             eeeccccccccccccccccccccccccccccccccccccc-ccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence            9999988887777766666667777788889999999998 99999987544322    22222  23445667788899


Q ss_pred             EEEEEeCCCcEEEEEccCCcceeE---EcccCCCeEEEEEe-eCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCC
Q 038577          491 TLASSSWDKTVRLWNVFEGKGSVE---SFPHTHDVLTVVYR-PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGG  566 (860)
Q Consensus       491 ~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  566 (860)
                      .+++++.|+.|++||+........   .......+.+..+. +++..+++++.||.+.+|+...............    
T Consensus       162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~----  237 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA----  237 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE----
T ss_pred             ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccce----
Confidence            999999999999999987664332   23445556665555 4778999999999999999865533221110000    


Q ss_pred             ccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEE
Q 038577          567 RLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRF  619 (860)
Q Consensus       567 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~  619 (860)
                       ............+...+++++|+|++++|++|+.||.|++||+.+++.++.+
T Consensus       238 -~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~  289 (342)
T d1yfqa_         238 -FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF  289 (342)
T ss_dssp             -EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             -eeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEe
Confidence             0000111122334557999999999999999999999999999999887644

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.7e-26  Score=231.13  Aligned_cols=273  Identities=20%  Similarity=0.355  Sum_probs=224.3

Q ss_pred             ccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc
Q 038577          258 DDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR  337 (860)
Q Consensus       258 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~  337 (860)
                      .....+...|+|++  +++++|++|+.||.|++||+.+++.+..+..|...|.+++|  +++++++++.+ +.+++|++.
T Consensus         9 ~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D-~~i~~~~~~   83 (293)
T d1p22a2           9 HCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSD-STVRVWDVN   83 (293)
T ss_dssp             ECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETT-SCEEEEESS
T ss_pred             eccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccc-ccccccccc
Confidence            44556778899875  57899999999999999999999999999999999998876  67788877665 999999999


Q ss_pred             CceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---eEEEeecCCCceEEEEEeeCCCEEEEEeCCCc
Q 038577          338 SESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGF---CFVTFTEHTNAVTALHFMANNHSLLSASLDGT  414 (860)
Q Consensus       338 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~  414 (860)
                      .+........+....  ..+.+....++++..++.+.+|+.....   ....+..|...+..+.+.+  ..+++++.|+.
T Consensus        84 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~  159 (293)
T d1p22a2          84 TGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRT  159 (293)
T ss_dssp             SCCEEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSE
T ss_pred             ccccccccccccccc--ccccccccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCc
Confidence            998877766554433  3455566789999999999999987654   3455667888888777654  47889999999


Q ss_pred             EEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEE
Q 038577          415 VRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLAS  494 (860)
Q Consensus       415 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  494 (860)
                      +++||+.+++....+..... .+..+.+  ++.++++++.|+ .|++||+++.+.+..+.+|...+..  +++++.+|++
T Consensus       160 i~~~d~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~s  233 (293)
T d1p22a2         160 IKVWNTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDN-TIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVS  233 (293)
T ss_dssp             EEEEETTTCCEEEEEECCSS-CEEEEEE--ETTEEEEEETTS-CEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEE
T ss_pred             eeeecCCCCcEEEEEccccc-ccccccC--CCCeEEEecCCC-EEEEEecccceeeeeecccceeeee--ccccceEEEE
Confidence            99999999998888775543 4555554  467899999998 9999999999999999999988875  5568899999


Q ss_pred             EeCCCcEEEEEccCC---------cceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEe
Q 038577          495 SSWDKTVRLWNVFEG---------KGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWD  547 (860)
Q Consensus       495 ~~~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  547 (860)
                      ++.||.|++||+...         .....+.+|...|++++|  ++++|++++.||+|++||
T Consensus       234 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         234 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             EcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence            999999999997542         234556689999999998  567899999999999997

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=3.5e-26  Score=243.17  Aligned_cols=339  Identities=12%  Similarity=0.048  Sum_probs=244.5

Q ss_pred             EEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEE--Ee---cCcccCe
Q 038577          278 MVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYIL--KQ---QGHYFDV  352 (860)
Q Consensus       278 ~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~--~~---~~~~~~v  352 (860)
                      ++++...+|.|++||+.+++.+..+..+. .+..++|+|||+++++++.+ +.+++||+.+++...  .+   .+|...+
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d-~~v~vwd~~t~~~~~~~~i~~~~~~~~~~  111 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRD-ARIDMIDLWAKEPTKVAEIKIGIEARSVE  111 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETT-SEEEEEETTSSSCEEEEEEECCSEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCC-CCEEEEEccCCceeEEEEEeCCCCCcceE
Confidence            45677789999999999999999998875 58999999999999888765 999999999886433  22   3456667


Q ss_pred             EEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEEeecCCCc-----------eEEEEEeeCCCEEEEEeC-CCcEEEEE
Q 038577          353 NCLAYSPDSQLLATG-ADDNKVKVWTVSSGFCFVTFTEHTNA-----------VTALHFMANNHSLLSASL-DGTVRAWD  419 (860)
Q Consensus       353 ~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~-----------v~~i~~~~~~~~l~s~~~-dg~i~~wd  419 (860)
                      .+++|+|||++++++ ..++.+++||..++.....+..|...           ...+..++++..++.... .+.+.+++
T Consensus       112 ~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~  191 (426)
T d1hzua2         112 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN  191 (426)
T ss_dssp             ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred             EeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence            778889999987554 57899999999999888877655443           344555566655544333 34555555


Q ss_pred             ccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCc--ccCeEEEEEcCCCC-EE--EE
Q 038577          420 LFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGH--EGPVHGLVFSPTNA-TL--AS  494 (860)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h--~~~v~~l~~s~~~~-~l--~s  494 (860)
                      ............+....+..+.++|++++++++..+...+.+++..+++.+......  ..+.....+.+.+. .+  ++
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (426)
T d1hzua2         192 YKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTS  271 (426)
T ss_dssp             CSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEE
T ss_pred             eccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEec
Confidence            555444443344455678899999999999999888879999999999988766432  22223333333332 22  23


Q ss_pred             EeCCCcEEEEEccCC-------cceeEEcccCCCeEEEEEeeCCCEEEE-------EeCCCeEEEEeCCCCceeEEEecc
Q 038577          495 SSWDKTVRLWNVFEG-------KGSVESFPHTHDVLTVVYRPDGRQLAC-------STLDGQIHFWDPLNGELMYTIEGR  560 (860)
Q Consensus       495 ~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~~~  560 (860)
                      .+.|+.+.+|+....       +....+.+|...+..++|+||+++|++       +..+++|+|||+.+++...++..+
T Consensus       272 ~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~  351 (426)
T d1hzua2         272 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPI  351 (426)
T ss_dssp             CTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECH
T ss_pred             cCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEecc
Confidence            345777878776443       455667789999999999999999995       445789999999999887776543


Q ss_pred             cccCCCccccccccccccCCCCcEEEEEEecCCCEEEEe-----cCCCeEEEEECCCceEEEEEeecccccccc
Q 038577          561 RDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAG-----GSSKYICMYDVADQVLLRRFQITHNLSLDG  629 (860)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~-----~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~  629 (860)
                      ...           .....+...+.+++|||||++++.+     +.+|.|+|||..++++.+.+....-..++|
T Consensus       352 ~~~-----------~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~~~tp~G  414 (426)
T d1hzua2         352 AEW-----------ADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTG  414 (426)
T ss_dssp             HHH-----------HCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTTCCSEEE
T ss_pred             chh-----------cccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCCccCCCc
Confidence            221           1112234569999999999977542     467899999999999988776554333333

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.94  E-value=1.5e-23  Score=211.83  Aligned_cols=276  Identities=12%  Similarity=0.139  Sum_probs=225.6

Q ss_pred             EEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeeEEEeecCCCceEEEE
Q 038577          320 WLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLA-TGADDNKVKVWTVSSGFCFVTFTEHTNAVTALH  398 (860)
Q Consensus       320 ~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~  398 (860)
                      ++.++...++.|.+||+++++.+..+... ..+..++|+|||++++ +++.++.|++||+.+++.+..+..+. .+..+.
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~   80 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA   80 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccc
Confidence            45566667799999999999998887644 4578999999999874 66678999999999999999987665 468999


Q ss_pred             EeeCCCEEEE-EeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcc
Q 038577          399 FMANNHSLLS-ASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHE  477 (860)
Q Consensus       399 ~~~~~~~l~s-~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~  477 (860)
                      +++++..+++ +..++.+.+|+..+++....+....  ...++.++|++..++++...+..+.+|+..+++....+..+ 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  157 (301)
T d1l0qa2          81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK--SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-  157 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-
T ss_pred             cccccccccccccccceeeecccccceeeeeccccc--cceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-
Confidence            9999986654 5567789999999988887776554  56889999999999887776669999999999988888744 


Q ss_pred             cCeEEEEEcCCCCEEEEEeCC-CcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeC---CCeEEEEeCCCCce
Q 038577          478 GPVHGLVFSPTNATLASSSWD-KTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTL---DGQIHFWDPLNGEL  553 (860)
Q Consensus       478 ~~v~~l~~s~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~  553 (860)
                      ..+..++++|+++.+++++.+ +.+.+|+..... ..........+..++|++++..+++++.   ++.|++||+.+++.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~  236 (301)
T d1l0qa2         158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS-VIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI  236 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred             CCceEEEeeccccceeeeccccccccccccccee-eeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeE
Confidence            567889999999998888766 556677766554 4455555667889999999998877643   46799999999999


Q ss_pred             eEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEE-EEecCCCeEEEEECCCceEEEEEeec
Q 038577          554 MYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYI-LAGGSSKYICMYDVADQVLLRRFQIT  622 (860)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l-~~~~~dg~v~vwd~~~~~~~~~~~~~  622 (860)
                      +..+..+..                     +.+++|||||++| ++++.++.|++||+++++++++++..
T Consensus       237 ~~~~~~~~~---------------------~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~vg  285 (301)
T d1l0qa2         237 TARIPVGPD---------------------PAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVG  285 (301)
T ss_dssp             EEEEECCSS---------------------EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred             EEEEcCCCC---------------------EEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeCC
Confidence            888876543                     7999999999987 57778999999999999999988753

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=2.5e-22  Score=202.72  Aligned_cols=273  Identities=14%  Similarity=0.155  Sum_probs=225.6

Q ss_pred             EEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcC
Q 038577          280 VVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSP  359 (860)
Q Consensus       280 ~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~  359 (860)
                      +++..++.|.+||+.+++.+..+.... .+..++|+|||+++++++..++.|.+||+.+++.+..+..+. .+..+++++
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g~-~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~   83 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSP   83 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECT
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECCC-CceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccccc
Confidence            356688999999999999999887664 468899999999998888777999999999999998887765 468899999


Q ss_pred             CCCEEEE-EeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEE-EEeCCCcEEEEEccccceeeEeeCCCCCcE
Q 038577          360 DSQLLAT-GADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLL-SASLDGTVRAWDLFRYRNFRTFTTPSSRQF  437 (860)
Q Consensus       360 ~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  437 (860)
                      ++..+++ +..++.+.+|+..+++....+.. ...+.++.++|++..++ ++..++.+.+|+..+.+....+....  .+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  160 (301)
T d1l0qa2          84 DGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR--SP  160 (301)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS--SE
T ss_pred             ccccccccccccceeeecccccceeeeeccc-cccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCC--Cc
Confidence            9986655 55677899999999988888764 45678899999998775 45567889999999998888776554  46


Q ss_pred             EEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeC---CCcEEEEEccCCcceeE
Q 038577          438 VSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSW---DKTVRLWNVFEGKGSVE  514 (860)
Q Consensus       438 ~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~  514 (860)
                      ..++++|++..++++..+...+.+|+....+....+..+ ..+..+++++++..++.++.   ++.|++||+.+++....
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~  239 (301)
T d1l0qa2         161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITAR  239 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEE
T ss_pred             eEEEeeccccceeeecccccccccccccceeeeeccccc-CCcceeeccccccccccccccceeeeeeeeecCCCeEEEE
Confidence            889999999999999888778999998888877777644 55778999999998876543   46799999999875444


Q ss_pred             EcccCCCeEEEEEeeCCCEE-EEEeCCCeEEEEeCCCCceeEEEec
Q 038577          515 SFPHTHDVLTVVYRPDGRQL-ACSTLDGQIHFWDPLNGELMYTIEG  559 (860)
Q Consensus       515 ~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~  559 (860)
                       ..+...+.+++|+|||++| ++++.++.|++||+.+++.+.++..
T Consensus       240 -~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         240 -IPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             -EECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             -EcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence             4445678999999999987 4667789999999999999988864

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.91  E-value=1.9e-23  Score=215.91  Aligned_cols=310  Identities=9%  Similarity=0.041  Sum_probs=235.5

Q ss_pred             EEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeec-CceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCc
Q 038577          270 CDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSIS-REKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGH  348 (860)
Q Consensus       270 ~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~  348 (860)
                      ++++++++++++++.++.|.+||+.+++.+.+++.+ ...+.+++|+|||+++++++..++.|.+||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            467899999999999999999999999999988854 4568899999999999888887899999999999888776432


Q ss_pred             c------cCeEEEEEcCCCCEEEEEe------------CCCcEEEEECCCCeeEEEeec--CCCceEEEEEeeCCCEEEE
Q 038577          349 Y------FDVNCLAYSPDSQLLATGA------------DDNKVKVWTVSSGFCFVTFTE--HTNAVTALHFMANNHSLLS  408 (860)
Q Consensus       349 ~------~~v~~~~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~s  408 (860)
                      .      ..+..++|+|||+++++++            .++.+.+|+..+++....+..  ....+..+.+++++..+++
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA  161 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence            2      2456799999999988765            467789999887765543332  2344556667777765543


Q ss_pred             EeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCC
Q 038577          409 ASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPT  488 (860)
Q Consensus       409 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~  488 (860)
                         ++.+.+|++.+++....+....  ....+.++|++..++.....++.+.+++..                 ..+.+.
T Consensus       162 ---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~  219 (346)
T d1jmxb_         162 ---GPDIYKMDVKTGKYTVALPLRN--WNRKGYSAPDVLYFWPHQSPRHEFSMLYTI-----------------ARFKDD  219 (346)
T ss_dssp             ---SSSEEEECTTTCCEEEEECSTT--CCCTTBCCCBCCCCCCCCCTTCEEEEEEEE-----------------EEC---
T ss_pred             ---CCcceEEEccCCCEEEEEecCC--CccceEEeccccEEEEEecCCCceEeeeee-----------------eeeccC
Confidence               2468999999988887776543  334566778887776666555455554421                 122334


Q ss_pred             CCEEEEEeCCCcEEEEEccCCcceeEE-cccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCc
Q 038577          489 NATLASSSWDKTVRLWNVFEGKGSVES-FPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGR  567 (860)
Q Consensus       489 ~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  567 (860)
                      ...++++..++.+.+||..++...... ..+...+..+.+++++.+++... ++.|.+||..+++.+..+....      
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~------  292 (346)
T d1jmxb_         220 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDH------  292 (346)
T ss_dssp             ----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSS------
T ss_pred             ceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcCCC------
Confidence            455666677788999999988754443 36788899999999998888776 4579999999999988876543      


Q ss_pred             cccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeecc
Q 038577          568 LMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITH  623 (860)
Q Consensus       568 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~  623 (860)
                                     .+.+++|||||++|++++.|+.|++||+++++.++++..+.
T Consensus       293 ---------------~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~  333 (346)
T d1jmxb_         293 ---------------TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG  333 (346)
T ss_dssp             ---------------CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSS
T ss_pred             ---------------CEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCC
Confidence                           37899999999999999999999999999999999887543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=3.5e-23  Score=212.95  Aligned_cols=300  Identities=10%  Similarity=0.035  Sum_probs=227.9

Q ss_pred             CEEEEEEcCCeEEEEECCCceeEEEEeecC--ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcc-----
Q 038577          277 DMVVVGFSNGVFGLYQMPDFVCIHLLSISR--EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHY-----  349 (860)
Q Consensus       277 ~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~-----  349 (860)
                      +++++++.++.|.+||+.+++.+..+..+.  ..+.+++|+|||+++++++..++.|.+||+.+++.+.....+.     
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            478999999999999999999999887643  4578999999999998887777999999999999988876543     


Q ss_pred             cCeEEEEEcCCCCEEEEEe------------CCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 038577          350 FDVNCLAYSPDSQLLATGA------------DDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRA  417 (860)
Q Consensus       350 ~~v~~~~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~  417 (860)
                      ..+..++|+|+++.++++.            .++.+.+||..++.....+. +...+..++|+|+++++++++.  .+.+
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~--~~~~  158 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLAWARDGSKLYGLGR--DLHV  158 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECTTSSCEEEESS--SEEE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-ccCCceEEEEcCCCCEEEEEcC--Ccce
Confidence            3355789999999998876            35788999999999888886 4566889999999999998865  4778


Q ss_pred             EEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeC
Q 038577          418 WDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSW  497 (860)
Q Consensus       418 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  497 (860)
                      ||..+++....+......  ....+++++..+.......+....                   .......+.......+.
T Consensus       159 ~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~  217 (337)
T d1pbyb_         159 MDPEAGTLVEDKPIQSWE--AETYAQPDVLAVWNQHESSGVMAT-------------------PFYTARKDIDPADPTAY  217 (337)
T ss_dssp             EETTTTEEEEEECSTTTT--TTTBCCCBCCCCCCCCTTTTEEEE-------------------EEEEEBTTSCTTSGGGE
T ss_pred             eeeecCcEEEEeecCCcc--ccceecCCcceeeccccccceeee-------------------eeeeeeeccceeeeccc
Confidence            999888877766554321  122233444333222222211111                   11122223333333444


Q ss_pred             CCcEEEEEccCCcceeE-EcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCcccccccccc
Q 038577          498 DKTVRLWNVFEGKGSVE-SFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAA  576 (860)
Q Consensus       498 dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  576 (860)
                      ++.+.+|+..++..... ...+...+..+.++|++.+++++  ++.|++||+.+++.+..+....               
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~---------------  280 (337)
T d1pbyb_         218 RTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---------------  280 (337)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---------------
T ss_pred             CccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCC---------------
Confidence            66799999988875443 34577788999999999998876  5889999999999998886544               


Q ss_pred             ccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeecc
Q 038577          577 NSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITH  623 (860)
Q Consensus       577 ~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~  623 (860)
                            .+.+++|+|||++|++++.++.|++||+++++.+++++.+.
T Consensus       281 ------~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~g  321 (337)
T d1pbyb_         281 ------SYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG  321 (337)
T ss_dssp             ------CCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred             ------CEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEECCC
Confidence                  37899999999999999999999999999999999887644

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.90  E-value=5.2e-22  Score=204.95  Aligned_cols=307  Identities=11%  Similarity=0.038  Sum_probs=222.4

Q ss_pred             EEEe-CCCEEEeee-CCeEEEEECCCCcEEeecc-CCccCeeEEEEcCCCCEEE-EEcCCCcEEEEEcccCeEEEEeecC
Q 038577           18 AVLS-QNTKLISPV-GNRVSVTDLIKSKTVTLPV-ESSSNICRIAVSPDGTFLL-TVDENQRCHFINLHCHVVLHRVRFK   93 (860)
Q Consensus        18 ~~~s-dg~~l~~~~-~~~i~v~d~~~~~~~~~~~-~h~~~v~~va~spdg~~la-~~~~d~~i~vwd~~~~~~~~~~~~~   93 (860)
                      ++|+ ++++|+++. ++.|.+||+.+++....+. +|...+.+++|+|||++++ ++..++.|.+||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            4678 999999976 5799999999999876553 5777889999999999875 5567899999999999999887632


Q ss_pred             -------CceeEEEECCCCCEEEEE-------------eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCC
Q 038577           94 -------YPVNAILFSPNGKYIAVG-------------TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDS  153 (860)
Q Consensus        94 -------~~v~~~~fspdg~~la~~-------------~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~  153 (860)
                             ..+..++|+|||++++++             .+..+.+|+..+++... .   +. .......+..+.+++++
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~---~~-~~~~~~~~~~~~~~~~~  156 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK-P---VR-TFPMPRQVYLMRAADDG  156 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC-C---SE-EEECCSSCCCEEECTTS
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeee-E---EE-eeeccCceEEEEecCCC
Confidence                   246789999999998876             25778899988765311 1   11 11123456677788888


Q ss_pred             CeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEE-cCCccEEEeeecCCCCCCcc
Q 038577          154 NYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTI-ARDCYMFSWGFSGNDGKIDE  232 (860)
Q Consensus       154 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~-~~dg~i~~w~~~~~~~~~~~  232 (860)
                      ..++++   +.+.+|++.++      .....+..+ .....+.++|++.     .++.. ..++.+.+++...       
T Consensus       157 ~~~~~~---~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------  214 (346)
T d1jmxb_         157 SLYVAG---PDIYKMDVKTG------KYTVALPLR-NWNRKGYSAPDVL-----YFWPHQSPRHEFSMLYTIA-------  214 (346)
T ss_dssp             CEEEES---SSEEEECTTTC------CEEEEECST-TCCCTTBCCCBCC-----CCCCCCCTTCEEEEEEEEE-------
T ss_pred             EEEEeC---CcceEEEccCC------CEEEEEecC-CCccceEEecccc-----EEEEEecCCCceEeeeeee-------
Confidence            766543   46889998876      334444433 3345566777776     44333 3334444443221       


Q ss_pred             ccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEE-EeecCceeEE
Q 038577          233 TMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHL-LSISREKITT  311 (860)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~-~~~~~~~i~~  311 (860)
                                                            .+.+....++.+..++.+.+|+..++..... ...+...+..
T Consensus       215 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (346)
T d1jmxb_         215 --------------------------------------RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFT  256 (346)
T ss_dssp             --------------------------------------EC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEE
T ss_pred             --------------------------------------eeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEE
Confidence                                                  1222333455566677899999988776544 4556778889


Q ss_pred             EEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCC
Q 038577          312 AVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHT  391 (860)
Q Consensus       312 ~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  391 (860)
                      +.+++++..+++...  +.+.+||..+++.+..+. +...+.+++|+|||+++++++.|+.|++||..+++.+.++..+.
T Consensus       257 ~~~~~~~~~~~~~~~--~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~  333 (346)
T d1jmxb_         257 GLRSPKDPNQIYGVL--NRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG  333 (346)
T ss_dssp             EEECSSCTTEEEEEE--SEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSS
T ss_pred             EEEeCCCCEEEEecC--CeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCC
Confidence            999999998887664  689999999999887765 34568999999999999999999999999999999999887554


Q ss_pred             C
Q 038577          392 N  392 (860)
Q Consensus       392 ~  392 (860)
                      +
T Consensus       334 g  334 (346)
T d1jmxb_         334 G  334 (346)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=4.9e-21  Score=196.67  Aligned_cols=275  Identities=8%  Similarity=-0.064  Sum_probs=211.8

Q ss_pred             eEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEE-EEEcCC
Q 038577          208 RIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVV-VGFSNG  286 (860)
Q Consensus       208 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~g  286 (860)
                      ++++++.|++|.+||+.+...                          ........+...+.+++++|||++++ +++.++
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~~--------------------------~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~   56 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMAV--------------------------DKVITIADAGPTPMVPMVAPGGRIAYATVNKSE   56 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEE--------------------------EEEEECTTCTTCCCCEEECTTSSEEEEEETTTT
T ss_pred             EEEEEcCCCEEEEEECCCCeE--------------------------EEEEECCCCCCCccEEEECCCCCEEEEEECCCC
Confidence            899999999999999987532                          11222333445678899999999875 567789


Q ss_pred             eEEEEECCCceeEEEEeecCc-----eeEEEEEeeCCCEEEEEEc-----------cCCcEEEEEccCceEEEEecCccc
Q 038577          287 VFGLYQMPDFVCIHLLSISRE-----KITTAVFNELGNWLVFGCA-----------KLGQLLVWEWRSESYILKQQGHYF  350 (860)
Q Consensus       287 ~i~~~~~~~~~~~~~~~~~~~-----~i~~~~~s~~~~~l~~~~~-----------~~g~i~v~d~~~~~~~~~~~~~~~  350 (860)
                      .|.+||+.+++.+..+..+..     .+..++|+|+++.++++..           .++.+.+||..++.....+..+ .
T Consensus        57 ~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~  135 (337)
T d1pbyb_          57 SLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-R  135 (337)
T ss_dssp             EEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-S
T ss_pred             eEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-C
Confidence            999999999999888776543     3557999999999988764           2478899999999988877644 4


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCC------------------------CEE
Q 038577          351 DVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANN------------------------HSL  406 (860)
Q Consensus       351 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~------------------------~~l  406 (860)
                      .+.+++|+|+|+++++++.  .+.+||..+++....+..+... ....+.+++                        ...
T Consensus       136 ~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (337)
T d1pbyb_         136 QITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPA  212 (337)
T ss_dssp             SCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTT
T ss_pred             CceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeecccee
Confidence            5788999999999999865  5788999999888776543221 111111211                        111


Q ss_pred             EEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEc
Q 038577          407 LSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFS  486 (860)
Q Consensus       407 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s  486 (860)
                      ..+..++.+.+|+..++........+.......+.+++++.+++.+.  + .+++||+.+++.+..+. +...+.+++|+
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~i~v~d~~~~~~~~~~~-~~~~~~~~~~s  288 (337)
T d1pbyb_         213 DPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY--N-VLESFDLEKNASIKRVP-LPHSYYSVNVS  288 (337)
T ss_dssp             SGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE--S-EEEEEETTTTEEEEEEE-CSSCCCEEEEC
T ss_pred             eecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEcc--c-cEEEEECCCCcEEEEEc-CCCCEEEEEEC
Confidence            12233456888999888777666666667788899999999988764  4 89999999999998886 66778999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEccCCcceeEEc
Q 038577          487 PTNATLASSSWDKTVRLWNVFEGKGSVESF  516 (860)
Q Consensus       487 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  516 (860)
                      |||++|++++.|+.|++||..+.+.+..+.
T Consensus       289 ~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~  318 (337)
T d1pbyb_         289 TDGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             TTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence            999999999999999999999998766654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.87  E-value=2.2e-19  Score=187.10  Aligned_cols=311  Identities=9%  Similarity=-0.055  Sum_probs=213.6

Q ss_pred             cEEEe-CCCEEEeee------CCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEc----------CCCcEEEE
Q 038577           17 NAVLS-QNTKLISPV------GNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVD----------ENQRCHFI   79 (860)
Q Consensus        17 ~~~~s-dg~~l~~~~------~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~----------~d~~i~vw   79 (860)
                      .++++ ||+.+++..      .+.|.+||..+++.+..+..+..  ..++|||||++|++++          .++.|.+|
T Consensus        25 ~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~  102 (373)
T d2madh_          25 DEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL--PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVF  102 (373)
T ss_pred             ccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCC--ccEEEcCCCCEEEEEeecCCcccccccceEEEEE
Confidence            57899 999997652      25699999999999877655443  4799999999999874          35789999


Q ss_pred             EcccCeEEEEeec-CC-------ceeEEEECCCCCEEEEE---eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEE
Q 038577           80 NLHCHVVLHRVRF-KY-------PVNAILFSPNGKYIAVG---TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALN  148 (860)
Q Consensus        80 d~~~~~~~~~~~~-~~-------~v~~~~fspdg~~la~~---~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~  148 (860)
                      |..+++.+..+.. ..       ....+.|+||++.+++.   .++.+.+|+....+.           ..+.....++.
T Consensus       103 D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~  171 (373)
T d2madh_         103 DPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSD-----------DQLLSSPTCYH  171 (373)
T ss_pred             ECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeE-----------EEEeccceeEE
Confidence            9999999888762 22       23568899999987766   457888998877542           23444567899


Q ss_pred             EcCCCCeE-EEeecCCeEEEEeecccccCcccccceEee------cCCCcEEEEEEccCCCCCccceEEEEcCCccEEEe
Q 038577          149 WSPDSNYL-LVGSKDLAVRLFYVKEKLKGIHTNKPFLLL------GHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSW  221 (860)
Q Consensus       149 ~s~d~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~------~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w  221 (860)
                      |+|+++.+ ++.+.|+.+.+|+....      .......      ++........+.+++      .++..+.++.+.+|
T Consensus       172 ~s~~g~~~~v~~~~dg~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~v~~~  239 (373)
T d2madh_         172 IHPGAPSTFYLLCAQGGLAKTDHAGG------AAGAGLVGAMLTAAQNLLTQPAQANKSG------RIVWPVYSGKILQA  239 (373)
T ss_pred             EecCCCcEEEEEcCCCeEEEEEcCCc------eeeEEEeeeccccCccceeeeEEECCCc------eEEEecCCceEEEE
Confidence            99999755 67889999999998877      2222222      222223444555555      56677788999999


Q ss_pred             eecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEE
Q 038577          222 GFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHL  301 (860)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~  301 (860)
                      +......                          .................+.|.....+..+.++....+          
T Consensus       240 ~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----------  283 (373)
T d2madh_         240 DISAAGA--------------------------TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYL----------  283 (373)
T ss_pred             EcCCCeE--------------------------EEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEE----------
Confidence            8876432                          0001111122233333444444333333333322111          


Q ss_pred             EeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCE--EEEEeCCCcEEEEECC
Q 038577          302 LSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQL--LATGADDNKVKVWTVS  379 (860)
Q Consensus       302 ~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~dg~i~iwd~~  379 (860)
                                  +..++..++... .++.+.+||..+++.+..+. +...+.+++|+|||+.  +++++.|+.|++||+.
T Consensus       284 ------------~~~~~~~~~~~~-~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~  349 (373)
T d2madh_         284 ------------LTSEQSAWKLHA-AAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             ------------ecCCCceEEeec-CCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence                        122233333333 33889999999999888764 5566899999999984  4678899999999999


Q ss_pred             CCeeEEEeecCCCceEEEEEeeC
Q 038577          380 SGFCFVTFTEHTNAVTALHFMAN  402 (860)
Q Consensus       380 ~~~~~~~~~~~~~~v~~i~~~~~  402 (860)
                      +++.+..+..+......+++.++
T Consensus       350 tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         350 AGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CCCEEEEECCCCCCCcEEEEecC
Confidence            99999999988888888887654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.87  E-value=3.3e-18  Score=178.07  Aligned_cols=326  Identities=7%  Similarity=-0.097  Sum_probs=217.7

Q ss_pred             cCCceeEEEECCCCCEEEEE------eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeec----
Q 038577           92 FKYPVNAILFSPNGKYIAVG------TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSK----  161 (860)
Q Consensus        92 ~~~~v~~~~fspdg~~la~~------~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~----  161 (860)
                      +..++.+++++|||+.+++.      ..+.+.+||..+++       .+..+..+...  .++|+|||++|++++.    
T Consensus        19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~-------~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~   89 (373)
T d2madh_          19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGS-------ILGHVNGGFLP--NPVAAHSGSEFALASTSFSR   89 (373)
T ss_pred             CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCC-------EEEEEeCCCCc--cEEEcCCCCEEEEEeecCCc
Confidence            67889999999999998876      33679999999887       45666666543  7999999999998753    


Q ss_pred             ------CCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccC
Q 038577          162 ------DLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETME  235 (860)
Q Consensus       162 ------dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~  235 (860)
                            ++.|.+||..++      ........+......+...|                                    
T Consensus        90 ~~~~~~~~~v~v~D~~t~------~~~~~~~~~~~~~~~~~~~~------------------------------------  127 (373)
T d2madh_          90 IAKGKRTDYVEVFDPVTF------LPIADIELPDAPRFDVGPYS------------------------------------  127 (373)
T ss_pred             ccccccceEEEEEECCCC------cEEEEEecCCcceeEeccCC------------------------------------
Confidence                  567889988877      33444443333322211111                                    


Q ss_pred             CCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEE--cCCeEEEEECCCceeEEEEeecCceeEEEE
Q 038577          236 DSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGF--SNGVFGLYQMPDFVCIHLLSISREKITTAV  313 (860)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~  313 (860)
                                                      ..+.++++++.+++..  .++.+.+|+....+.....    ....++.
T Consensus       128 --------------------------------~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  171 (373)
T d2madh_         128 --------------------------------WMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPTCYH  171 (373)
T ss_pred             --------------------------------CcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe----ccceeEE
Confidence                                            1233444444433332  2345556665554443322    2345677


Q ss_pred             EeeCCCEEEEEEccCCcEEEEEccCceEEEEecC------cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE--E
Q 038577          314 FNELGNWLVFGCAKLGQLLVWEWRSESYILKQQG------HYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCF--V  385 (860)
Q Consensus       314 ~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~  385 (860)
                      ++|+|+.++++...++.+.+|+...+........      .........+.+++. ++..+.++.+.+|+...+...  .
T Consensus       172 ~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~  250 (373)
T d2madh_         172 IHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKA  250 (373)
T ss_pred             EecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEEE
Confidence            7788777766666668888888777665554422      122234455666664 445567889999998876543  3


Q ss_pred             EeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECC
Q 038577          386 TFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK  465 (860)
Q Consensus       386 ~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~  465 (860)
                      ....+........+.|.....+..+.|+....+                       ..+.+..++....++ .+.+||..
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----------------------~~~~~~~~~~~~~~~-~v~~~d~~  306 (373)
T d2madh_         251 PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYL-----------------------LTSEQSAWKLHAAAK-EVTSVTGL  306 (373)
T ss_pred             eeccccCcEEeeeeccCcceeeEEecCCCeEEE-----------------------ecCCCceEEeecCCC-eEEEEECC
Confidence            334455556666667766666666666653322                       223445555555566 89999999


Q ss_pred             CCceEEEecCcccCeEEEEEcCCCCE--EEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeC
Q 038577          466 TGRLLDILSGHEGPVHGLVFSPTNAT--LASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPD  530 (860)
Q Consensus       466 ~~~~~~~~~~h~~~v~~l~~s~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  530 (860)
                      +++.+..+. +...+.+++|+|||+.  +++++.|+.|++||+.+++.+..+..+....+.+++.++
T Consensus       307 t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         307 VGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            999998876 6677899999999984  468889999999999999987777778777788877654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=2.2e-18  Score=176.16  Aligned_cols=285  Identities=14%  Similarity=0.128  Sum_probs=193.4

Q ss_pred             eeeCCeEEEEECCCCcEE--eeccCCccCeeEEEEcCCCCEEEEE-cCCCcEEEEEcccCe----EEEEeecCCceeEEE
Q 038577           28 SPVGNRVSVTDLIKSKTV--TLPVESSSNICRIAVSPDGTFLLTV-DENQRCHFINLHCHV----VLHRVRFKYPVNAIL  100 (860)
Q Consensus        28 ~~~~~~i~v~d~~~~~~~--~~~~~h~~~v~~va~spdg~~la~~-~~d~~i~vwd~~~~~----~~~~~~~~~~v~~~~  100 (860)
                      .+.+++|++|++.+...+  .....|.+.+..++|||||++|+++ ..++.|.+|++....    ......+...+..++
T Consensus        10 ~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~   89 (333)
T d1ri6a_          10 SPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHIS   89 (333)
T ss_dssp             EGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEE
T ss_pred             CCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEE
Confidence            345689999999755332  2223788999999999999999655 458999999997653    233334566788999


Q ss_pred             ECCCCCEEEEE--eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeec-CCeEEEEeecccccCc
Q 038577          101 FSPNGKYIAVG--TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSK-DLAVRLFYVKEKLKGI  177 (860)
Q Consensus       101 fspdg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~-dg~v~vwd~~~~~~~~  177 (860)
                      |+|||++|+++  .++.+.+|+......     ........+...+.++.|+||++++++++. +..+.+|+........
T Consensus        90 ~spDg~~l~v~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~  164 (333)
T d1ri6a_          90 TDHQGQFVFVGSYNAGNVSVTRLEDGLP-----VGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV  164 (333)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEEETTEE-----EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             EcCCCCEEeecccCCCceeeeccccccc-----eecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcce
Confidence            99999999998  577899998876542     123344567778899999999998888764 4579999987652111


Q ss_pred             ccccceEeecCCCcEEEEEEccCCCCCccceEEEE-cCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEee-
Q 038577          178 HTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTI-ARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLL-  255 (860)
Q Consensus       178 ~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~-~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  255 (860)
                      .................++|++++.     .++.. ...+...+|+........                   ...... 
T Consensus       165 ~~~~~~~~~~~g~~p~~i~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~-------------------~~~~~~~  220 (333)
T d1ri6a_         165 AQDPAEVTTVEGAGPRHMVFHPNEQ-----YAYCVNELNSSVDVWELKDPHGNI-------------------ECVQTLD  220 (333)
T ss_dssp             EEEEEEEECSTTCCEEEEEECTTSS-----EEEEEETTTTEEEEEESSCTTSCC-------------------EEEEEEE
T ss_pred             eeeceeeeeecCCCccEEEEeccce-----eEEeeccccCceEEEeecccccce-------------------eeeeeee
Confidence            1111122334556678899999998     65544 456677787765432210                   011000 


Q ss_pred             eeccccCCCCceEEEEecCCCCEEEEE-EcCCeEEEEECCCceeEEE---EeecCceeEEEEEeeCCCEEEEEEccCCcE
Q 038577          256 RKDDFSQAPSKVTACDYHRGLDMVVVG-FSNGVFGLYQMPDFVCIHL---LSISREKITTAVFNELGNWLVFGCAKLGQL  331 (860)
Q Consensus       256 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~g~i~~~~~~~~~~~~~---~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i  331 (860)
                      ..............++++++++++++. ..++.+.+|++........   .......+..++|+|||++|++++.+++.|
T Consensus       221 ~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v  300 (333)
T d1ri6a_         221 MMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHI  300 (333)
T ss_dssp             CSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEE
T ss_pred             eeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeE
Confidence            011112233456778899999977755 4568899998865443322   223345678899999999999998888999


Q ss_pred             EEEEc--cCceE
Q 038577          332 LVWEW--RSESY  341 (860)
Q Consensus       332 ~v~d~--~~~~~  341 (860)
                      .+|++  +++..
T Consensus       301 ~v~~id~~tG~l  312 (333)
T d1ri6a_         301 SVYEIVGEQGLL  312 (333)
T ss_dssp             EEEEEETTTTEE
T ss_pred             EEEEEECCCCcE
Confidence            99954  55544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=2.6e-19  Score=185.08  Aligned_cols=284  Identities=11%  Similarity=0.031  Sum_probs=212.5

Q ss_pred             eEEEEEeeCCCEEEEEEcc----CCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEe----------CCCcEE
Q 038577          309 ITTAVFNELGNWLVFGCAK----LGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGA----------DDNKVK  374 (860)
Q Consensus       309 i~~~~~s~~~~~l~~~~~~----~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~  374 (860)
                      +...+.+|||+.+++....    .+.+.+||..+++.+..+..+..  ..++|+|||++|++.+          .++.|+
T Consensus         4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~   81 (355)
T d2bbkh_           4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVE   81 (355)
T ss_dssp             CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence            3344668999999876532    35799999999999888866544  3799999999887643          478999


Q ss_pred             EEECCCCeeEEEeecCCC-------ceEEEEEeeCCCEEEEEe--CCCcEEEEEccccceeeEeeCCCCCc------EEE
Q 038577          375 VWTVSSGFCFVTFTEHTN-------AVTALHFMANNHSLLSAS--LDGTVRAWDLFRYRNFRTFTTPSSRQ------FVS  439 (860)
Q Consensus       375 iwd~~~~~~~~~~~~~~~-------~v~~i~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~~------~~~  439 (860)
                      +||..+++.+..+..+..       ....++|++++++++.+.  .+..+.+|+..+++....+..+....      ...
T Consensus        82 v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (355)
T d2bbkh_          82 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTF  161 (355)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEE
T ss_pred             EEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcce
Confidence            999999998887764432       235678999999887764  45689999999998888776654321      234


Q ss_pred             EEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc--c
Q 038577          440 LASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF--P  517 (860)
Q Consensus       440 ~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~  517 (860)
                      +.+++++..+++...+...+.+++......     .+...+....+++++..++.++.++.+++|++..+.......  .
T Consensus       162 ~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  236 (355)
T d2bbkh_         162 FMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEA  236 (355)
T ss_dssp             EEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEES
T ss_pred             EEEcCCCCEEEEEecCCCeEEEEecccccc-----eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCC
Confidence            667788887777666655666666554432     244455667788889999999999999999998775322110  0


Q ss_pred             ----------cCCCeEEEEEeeCCCEEEEEeCC----------CeEEEEeCCCCceeEEEecccccCCCccccccccccc
Q 038577          518 ----------HTHDVLTVVYRPDGRQLACSTLD----------GQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAAN  577 (860)
Q Consensus       518 ----------~~~~v~~~~~s~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  577 (860)
                                .......+++++++..++....+          ..|.+||..+++.+..+.....               
T Consensus       237 ~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~---------------  301 (355)
T d2bbkh_         237 LTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE---------------  301 (355)
T ss_dssp             SCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE---------------
T ss_pred             cccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCC---------------
Confidence                      12234558899999988876543          3699999999999988876553               


Q ss_pred             cCCCCcEEEEEEecCCC--EEEEecCCCeEEEEECCCceEEEEEe
Q 038577          578 SSSGKCFTTLCYSADGS--YILAGGSSKYICMYDVADQVLLRRFQ  620 (860)
Q Consensus       578 ~~~~~~i~~l~~s~~g~--~l~~~~~dg~v~vwd~~~~~~~~~~~  620 (860)
                            +.+++|+|||+  ++++++.|+.|++||+++++.++++.
T Consensus       302 ------~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         302 ------IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             ------ECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             ------EEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence                  78999999998  45667789999999999999998775

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=7.7e-18  Score=172.12  Aligned_cols=282  Identities=13%  Similarity=0.139  Sum_probs=197.8

Q ss_pred             EEEEcCCCcEEEEEcccC---eEEEEeecCCceeEEEECCCCCEEEEE--eCCeEEEEeCCCCCcccceeEEEEEeeccC
Q 038577           67 LLTVDENQRCHFINLHCH---VVLHRVRFKYPVNAILFSPNGKYIAVG--TGKLVQIWRSPGFKKEVFAFELIRTLADCN  141 (860)
Q Consensus        67 la~~~~d~~i~vwd~~~~---~~~~~~~~~~~v~~~~fspdg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~  141 (860)
                      +++++.+++|++|++.+.   +.+..+.+.+.+.+++|||||++|+++  .++.|++|++.......    .......+.
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~----~~~~~~~~~   82 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL----TFAAESALP   82 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE----EEEEEEECS
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcE----EEeeecccC
Confidence            466778999999998754   445566789999999999999999766  47999999998665321    111222345


Q ss_pred             CCeEEEEEcCCCCeEEEeec-CCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcC-CccEE
Q 038577          142 DKVTALNWSPDSNYLLVGSK-DLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR-DCYMF  219 (860)
Q Consensus       142 ~~v~~l~~s~d~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~-dg~i~  219 (860)
                      ..+..++|+|||++|++++. ++.+.+|+.... ..   ........+...+.++.++|+++     +++.++. +..+.
T Consensus        83 ~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~-~~---~~~~~~~~~~~~~~~v~~s~d~~-----~~~~~~~~~~~i~  153 (333)
T d1ri6a_          83 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDG-LP---VGVVDVVEGLDGCHSANISPDNR-----TLWVPALKQDRIC  153 (333)
T ss_dssp             SCCSEEEECTTSSEEEEEETTTTEEEEEEEETT-EE---EEEEEEECCCTTBCCCEECTTSS-----EEEEEEGGGTEEE
T ss_pred             CCceEEEEcCCCCEEeecccCCCceeeeccccc-cc---eecccccCCCccceEEEeeecce-----eeeccccccceee
Confidence            56788999999999998875 678999998866 11   23344556777888999999998     7777764 45788


Q ss_pred             EeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEE-cCCeEEEEECCCce-
Q 038577          220 SWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGF-SNGVFGLYQMPDFV-  297 (860)
Q Consensus       220 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~g~i~~~~~~~~~-  297 (860)
                      +|+......                      ...................++|++++..++... ..+...+++..... 
T Consensus       154 ~~~~~~~~~----------------------~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  211 (333)
T d1ri6a_         154 LFTVSDDGH----------------------LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG  211 (333)
T ss_dssp             EEEECTTSC----------------------EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS
T ss_pred             EEEeccCCc----------------------ceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeeccccc
Confidence            998876432                      111111122233445678899999999887655 45677788764322 


Q ss_pred             ---eEEEEee------cCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEe---cCcccCeEEEEEcCCCCEEE
Q 038577          298 ---CIHLLSI------SREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ---QGHYFDVNCLAYSPDSQLLA  365 (860)
Q Consensus       298 ---~~~~~~~------~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~  365 (860)
                         .......      .......++++++++++++.....+.+.+|++.........   ......+..++|+|||++|+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~  291 (333)
T d1ri6a_         212 NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLI  291 (333)
T ss_dssp             CCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEE
T ss_pred             ceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEE
Confidence               1122211      22346678999999999999888899999998765433222   23345678899999999887


Q ss_pred             EEeC-CCcEEEE--ECCCCee
Q 038577          366 TGAD-DNKVKVW--TVSSGFC  383 (860)
Q Consensus       366 ~~~~-dg~i~iw--d~~~~~~  383 (860)
                      +++. ++.|++|  |.++|+.
T Consensus       292 va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         292 AAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             EECTTTCEEEEEEEETTTTEE
T ss_pred             EEECCCCeEEEEEEECCCCcE
Confidence            7654 6889998  4556654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=5.7e-18  Score=174.88  Aligned_cols=304  Identities=12%  Similarity=0.059  Sum_probs=201.1

Q ss_pred             CeeEEEEcCCCCEEEEEc-----CCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEE-----------eCCeEE
Q 038577           54 NICRIAVSPDGTFLLTVD-----ENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG-----------TGKLVQ  117 (860)
Q Consensus        54 ~v~~va~spdg~~la~~~-----~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~-----------~~~~i~  117 (860)
                      ++...+.+|||+.+++..     .++.|.+||..+++.+.++.. +....++|||||++|++.           .++.|.
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~-g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~   81 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG-GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVE   81 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE-CSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEEC-CCCCceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence            344557799999997753     346799999999999998872 334479999999988875           257899


Q ss_pred             EEeCCCCCcccceeEEEEEeeccC-------CCeEEEEEcCCCCeEEEee--cCCeEEEEeecccccCcccccceEeecC
Q 038577          118 IWRSPGFKKEVFAFELIRTLADCN-------DKVTALNWSPDSNYLLVGS--KDLAVRLFYVKEKLKGIHTNKPFLLLGH  188 (860)
Q Consensus       118 iwd~~~~~~~~~~~~~~~~~~~h~-------~~v~~l~~s~d~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~~~~~~~h  188 (860)
                      +||..+++.       ...+..+.       .....++|+||+++++++.  .+..+.+|+..++      .....+..+
T Consensus        82 v~D~~t~~~-------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~~  148 (355)
T d2bbkh_          82 VFDPVTLLP-------TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK------AFKRMLDVP  148 (355)
T ss_dssp             EECTTTCCE-------EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT------EEEEEEECC
T ss_pred             EEECCCCCE-------EEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCC------cEeeEEecC
Confidence            999999873       44443332       2345689999999888764  4678999999887      334444333


Q ss_pred             CCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceE
Q 038577          189 RDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVT  268 (860)
Q Consensus       189 ~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  268 (860)
                      ....   .+.....     ..++.+.|+....+........                    ...  ........+...+.
T Consensus       149 ~~~~---~~~~~~~-----~~~~~~~dg~~~~v~~~~~~~~--------------------~~~--~~~~~~~~~~~~~~  198 (355)
T d2bbkh_         149 DCYH---IFPTAPD-----TFFMHCRDGSLAKVAFGTEGTP--------------------EIT--HTEVFHPEDEFLIN  198 (355)
T ss_dssp             SEEE---EEEEETT-----EEEEEETTSCEEEEECCSSSCC--------------------EEE--ECCCCSCTTSCBCS
T ss_pred             Ccce---EeecCCc-----ceEEEcCCCCEEEEEecCCCeE--------------------EEE--ecccccceecceee
Confidence            2211   1111111     3334444444444433221110                    000  00011112223344


Q ss_pred             EEEecCCCCEEEEEEcCCeEEEEECCCceeEEE--EeecC----------ceeEEEEEeeCCCEEEEEEccC--------
Q 038577          269 ACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHL--LSISR----------EKITTAVFNELGNWLVFGCAKL--------  328 (860)
Q Consensus       269 ~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~--~~~~~----------~~i~~~~~s~~~~~l~~~~~~~--------  328 (860)
                      ...+.+++..++.++.++.+++|+...++....  ...+.          .....+++++++..++......        
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  278 (355)
T d2bbkh_         199 HPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA  278 (355)
T ss_dssp             CCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSC
T ss_pred             eccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCC
Confidence            556778888899999999999999987654321  11111          1234588999999988776542        


Q ss_pred             -CcEEEEEccCceEEEEecCcccCeEEEEEcCCCC--EEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeC
Q 038577          329 -GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQ--LLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMAN  402 (860)
Q Consensus       329 -g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~  402 (860)
                       ..|.+||..+++.+..+.. ...+.+++|+|||+  ++++++.|+.|++||.++++.+.++..+......+.+.++
T Consensus       279 ~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         279 SRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             EEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred             CCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCC
Confidence             3699999999988877753 34588999999997  4566777999999999999999999877766666665443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.79  E-value=2.9e-17  Score=176.37  Aligned_cols=384  Identities=12%  Similarity=0.067  Sum_probs=228.6

Q ss_pred             ceecccccccccCC--cEEEe-CCCEEEeeeCCeEEEEECCCCcEEeecc-----CCccCeeEEEEcCCCCEEEEEcC--
Q 038577            3 YRFQNLLGAPYRGG--NAVLS-QNTKLISPVGNRVSVTDLIKSKTVTLPV-----ESSSNICRIAVSPDGTFLLTVDE--   72 (860)
Q Consensus         3 ~~~~~~~g~~~~~~--~~~~s-dg~~l~~~~~~~i~v~d~~~~~~~~~~~-----~h~~~v~~va~spdg~~la~~~~--   72 (860)
                      |.|...++..|...  ++.|+ |++++ +-.++.|.+||+.+++...++.     .|...|.+++|||||++||+++.  
T Consensus         5 ~t~~~~~~~~~~~~~~~~~W~~d~~~~-~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~   83 (470)
T d2bgra1           5 YTLTDYLKNTYRLKLYSLRWISDHEYL-YKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYV   83 (470)
T ss_dssp             CCHHHHHHTCSCCCCCCCEECSSSEEE-EESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEE
T ss_pred             EEhHHhhCCceeccccCCEeCCCCEEE-EEcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCc
Confidence            44555555555544  56777 77654 5667889999999999866543     34578999999999999998743  


Q ss_pred             -------CCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeec------
Q 038577           73 -------NQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLAD------  139 (860)
Q Consensus        73 -------d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~------  139 (860)
                             ++.+.+||+.+++......+...+..+.|||||++||...++.+++|+..+++.       .+....      
T Consensus        84 ~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~-------~~~t~~~~~~~~  156 (470)
T d2bgra1          84 KQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPS-------YRITWTGKEDII  156 (470)
T ss_dssp             ECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCC-------EECCSCCBTTTE
T ss_pred             ceeeeccCceEEEEECCCCcccccccCCccccccccccCcceeeEeecccceEEECCCCce-------eeeeeccCCCcc
Confidence                   467899999999876555588899999999999999999999999999998863       111111      


Q ss_pred             ------------cCCCeEEEEEcCCCCeEEEeecCCe-EEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCcc
Q 038577          140 ------------CNDKVTALNWSPDSNYLLVGSKDLA-VRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKV  206 (860)
Q Consensus       140 ------------h~~~v~~l~~s~d~~~l~s~~~dg~-v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~  206 (860)
                                  ..+....+.|||||++|++...|.+ +..|.+......         .........+.+...+.    
T Consensus       157 ~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~----  223 (470)
T d2bgra1         157 YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE---------SLQYPKTVRVPYPKAGA----  223 (470)
T ss_dssp             EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST---------TCSSCEEEEEECCBTTS----
T ss_pred             cccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccC---------CCCCCeeeeeccccccc----
Confidence                        2234567889999999999876543 666655432000         00111222223222222    


Q ss_pred             ceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEc-C
Q 038577          207 NRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFS-N  285 (860)
Q Consensus       207 ~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~  285 (860)
                           ...+..+.+|++.++.......                 ................+..+.|.+++..++.... .
T Consensus       224 -----~~~~~~~~v~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~  281 (470)
T d2bgra1         224 -----VNPTVKFFVVNTDSLSSVTNAT-----------------SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRI  281 (470)
T ss_dssp             -----CCCEEEEEEEEGGGCCSSSCCC-----------------EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESS
T ss_pred             -----cCCcceEEEEECCCcceeeecc-----------------ccccCCccccCCCCceEEEEEEcCCCceeEEEeecc
Confidence                 1234467888887754311110                 0000111112233345677888888876665432 2


Q ss_pred             C-----eEEEEECCCceeEEEEe------ecCc-----eeEEEEEeeCCCE-EEEEEccCCcEEEE--EccCceEEEEec
Q 038577          286 G-----VFGLYQMPDFVCIHLLS------ISRE-----KITTAVFNELGNW-LVFGCAKLGQLLVW--EWRSESYILKQQ  346 (860)
Q Consensus       286 g-----~i~~~~~~~~~~~~~~~------~~~~-----~i~~~~~s~~~~~-l~~~~~~~g~i~v~--d~~~~~~~~~~~  346 (860)
                      +     .+..+|..++.......      ....     ......+.+++.. ++..+..+|...+|  +...+.. ..+.
T Consensus       282 ~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~-~~lt  360 (470)
T d2bgra1         282 QNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-TFIT  360 (470)
T ss_dssp             TTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCC-EESC
T ss_pred             CCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCCce-eeec
Confidence            1     23334444444332211      0011     1123345555543 34455555665555  5444443 3333


Q ss_pred             CcccCeEEEEEcCCCCEE-EEEeCCC----c--EEEEECCCCeeEEEe----ecCCCceEEEEEeeCCCEEEE-Ee--CC
Q 038577          347 GHYFDVNCLAYSPDSQLL-ATGADDN----K--VKVWTVSSGFCFVTF----TEHTNAVTALHFMANNHSLLS-AS--LD  412 (860)
Q Consensus       347 ~~~~~v~~~~~s~~~~~l-~~~~~dg----~--i~iwd~~~~~~~~~~----~~~~~~v~~i~~~~~~~~l~s-~~--~d  412 (860)
                      .+...|..+ ++++++.+ +++..++    .  |.-.++..+.....+    ..|...+..++|||||++++. ++  ..
T Consensus       361 ~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~  439 (470)
T d2bgra1         361 KGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGL  439 (470)
T ss_dssp             CSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSS
T ss_pred             cCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCC
Confidence            445556665 33344444 4444332    1  443455544444443    357888999999999998773 22  33


Q ss_pred             CcEEEEEccccceeeEeeC
Q 038577          413 GTVRAWDLFRYRNFRTFTT  431 (860)
Q Consensus       413 g~i~~wd~~~~~~~~~~~~  431 (860)
                      -.+.+|+..+++.++.+..
T Consensus       440 P~~~l~~~~~g~~v~~le~  458 (470)
T d2bgra1         440 PLYTLHSSVNDKGLRVLED  458 (470)
T ss_dssp             CEEEEEETTTTEEEEEEEC
T ss_pred             CeEEEEECCCCCEEEEEec
Confidence            4588999888888777653

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.72  E-value=2.6e-15  Score=160.84  Aligned_cols=365  Identities=10%  Similarity=0.039  Sum_probs=217.1

Q ss_pred             eEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee------cCCceeEEEECCCCCEEEEEe----------CCeEEEE
Q 038577           56 CRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR------FKYPVNAILFSPNGKYIAVGT----------GKLVQIW  119 (860)
Q Consensus        56 ~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~------~~~~v~~~~fspdg~~la~~~----------~~~i~iw  119 (860)
                      ..+.|.+|++++..  .++.+.+||+.+++....+.      +...|.++.|||||++||++.          ++.+.+|
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            46789999987763  46889999999998876665      346799999999999999873          3678999


Q ss_pred             eCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCccc---ccceEeec---------
Q 038577          120 RSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHT---NKPFLLLG---------  187 (860)
Q Consensus       120 d~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~---~~~~~~~~---------  187 (860)
                      |+.+++        ...+..|.+.+..+.|||||+++|.. .++.+.+|+..++......   .......+         
T Consensus        98 d~~~~~--------~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~  168 (470)
T d2bgra1          98 DLNKRQ--------LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE  168 (470)
T ss_dssp             ETTTTE--------ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred             ECCCCc--------ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeee
Confidence            999886        46678899999999999999999996 4678999998877211000   00001111         


Q ss_pred             CCCcEEEEEEccCCCCCccceEEEEcCCcc-EEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCc
Q 038577          188 HRDSVVGCFFSVDKKTDKVNRIYTIARDCY-MFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSK  266 (860)
Q Consensus       188 h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~-i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (860)
                      ..+....+.|+|||+     +|+....|.+ +..|.+.....                               .......
T Consensus       169 ~~~~~~~~~wSPDGk-----~ia~~~~d~~~v~~~~~~~~~~-------------------------------~~~~~~~  212 (470)
T d2bgra1         169 VFSAYSALWWSPNGT-----FLAYAQFNDTEVPLIEYSFYSD-------------------------------ESLQYPK  212 (470)
T ss_dssp             TSSSSBCEEECTTSS-----EEEEEEEECTTCCEEEEEECCS-------------------------------TTCSSCE
T ss_pred             ecCCccccEECCCCC-----ccceeEecCCcCceEEEEeecc-------------------------------CCCCCCe
Confidence            223345678999999     8988876643 55554432110                               0000111


Q ss_pred             eEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEE-----------eecCceeEEEEEeeCCCEEEEEEccCC---cEE
Q 038577          267 VTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLL-----------SISREKITTAVFNELGNWLVFGCAKLG---QLL  332 (860)
Q Consensus       267 v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~-----------~~~~~~i~~~~~s~~~~~l~~~~~~~g---~i~  332 (860)
                      ...+.+...+..    ..+..+.+|++..+......           ......+..+.|.+++..++......+   .+.
T Consensus       213 ~~~~~~~~~g~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~  288 (470)
T d2bgra1         213 TVRVPYPKAGAV----NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMD  288 (470)
T ss_dssp             EEEEECCBTTSC----CCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEE
T ss_pred             eeeecccccccc----CCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEE
Confidence            122222111111    11234566776544322111           112234677889998877666544322   233


Q ss_pred             E--EEccCceEEEEec-------------CcccCeEEEEEcCCC--CEEEEEeCCCcEEEE--ECCCCeeEEEeecCCCc
Q 038577          333 V--WEWRSESYILKQQ-------------GHYFDVNCLAYSPDS--QLLATGADDNKVKVW--TVSSGFCFVTFTEHTNA  393 (860)
Q Consensus       333 v--~d~~~~~~~~~~~-------------~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iw--d~~~~~~~~~~~~~~~~  393 (860)
                      +  +|..++.......             .+...  ...+.+++  ..++....+|..++|  +.. +.....+..+...
T Consensus       289 ~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~-g~~~~~lt~g~~~  365 (470)
T d2bgra1         289 ICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS--EPHFTLDGNSFYKIISNEEGYRHICYFQID-KKDCTFITKGTWE  365 (470)
T ss_dssp             EEEEETTTTEEEECGGGCEEEECSSSCSSSSSCC--CCEECTTSSEEEEEEECTTSCEEEEEEETT-CSCCEESCCSSSC
T ss_pred             EEEecCCCCcEEEEEEEeeeeeeccceeecccCC--CceeeecCCCcEEEEeccCcCceeEEEecc-CCceeeeccCCee
Confidence            3  3444554432211             11111  22344443  345566677766555  544 4444455555666


Q ss_pred             eEEEEEeeCCCEE-EEEeCCC----cEEEE--EccccceeeEee---CCCCCcEEEEEECCCCCEEEEEecCC--CeEEE
Q 038577          394 VTALHFMANNHSL-LSASLDG----TVRAW--DLFRYRNFRTFT---TPSSRQFVSLASDQSGEVICAGTLDS--FEIFV  461 (860)
Q Consensus       394 v~~i~~~~~~~~l-~s~~~dg----~i~~w--d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~--~~i~v  461 (860)
                      |..+ ++++++.+ +++..++    .-.+|  ++..+...+.+.   ..+...+..++|||||++++......  -.+.+
T Consensus       366 v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l  444 (470)
T d2bgra1         366 VIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTL  444 (470)
T ss_dssp             EEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEE
T ss_pred             EEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEE
Confidence            7776 44455444 4444332    22344  444444444433   23455688999999999988544322  26899


Q ss_pred             EECCCCceEEEecC
Q 038577          462 WSMKTGRLLDILSG  475 (860)
Q Consensus       462 ~d~~~~~~~~~~~~  475 (860)
                      |+..+++.+..+..
T Consensus       445 ~~~~~g~~v~~le~  458 (470)
T d2bgra1         445 HSSVNDKGLRVLED  458 (470)
T ss_dssp             EETTTTEEEEEEEC
T ss_pred             EECCCCCEEEEEec
Confidence            99999999888864

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.66  E-value=7.4e-15  Score=151.60  Aligned_cols=302  Identities=9%  Similarity=-0.033  Sum_probs=195.2

Q ss_pred             CCccCeeEEEEcCCCCEEEE---EcCCC--cEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEe-----------C
Q 038577           50 ESSSNICRIAVSPDGTFLLT---VDENQ--RCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGT-----------G  113 (860)
Q Consensus        50 ~h~~~v~~va~spdg~~la~---~~~d~--~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~-----------~  113 (860)
                      .+.+....++.+++++....   ...++  .+.+||..+++.+..+.... ...++|+|||+.|++..           +
T Consensus        17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~-~~~~a~spDg~~i~~~~~~~~~~~~g~~d   95 (368)
T d1mdah_          17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF-LSLAVAGHSGSDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT-TCEEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred             ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCC-CCcceECCCCCEEEEEcccCccccccccC
Confidence            35556667778889886432   23344  47777999999998887333 24699999999999862           4


Q ss_pred             CeEEEEeCCCCCcccceeEEEEEeeccCC-------CeEEEEEcCCCCeEEEee-cCCeEEEEeecccccCcccccceEe
Q 038577          114 KLVQIWRSPGFKKEVFAFELIRTLADCND-------KVTALNWSPDSNYLLVGS-KDLAVRLFYVKEKLKGIHTNKPFLL  185 (860)
Q Consensus       114 ~~i~iwd~~~~~~~~~~~~~~~~~~~h~~-------~v~~l~~s~d~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~  185 (860)
                      +.|.+||..+++.       ...+..+..       ....++|+|||++|+++. .++.+.+||+.+.      .....+
T Consensus        96 ~~v~v~D~~t~~~-------~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~------~~~~~~  162 (368)
T d1mdah_          96 DYVEVFDPVTFLP-------IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA------SDDQLT  162 (368)
T ss_dssp             EEEEEECTTTCCE-------EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTT------EEEEEE
T ss_pred             CeEEEEECCCCcE-------eeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCC------cEeEEe
Confidence            6799999999873       455543322       234689999999998875 5799999999988      444444


Q ss_pred             ecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCC
Q 038577          186 LGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPS  265 (860)
Q Consensus       186 ~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (860)
                      ..+....    +.+++..    .++..+.||.+.+|+........                     +. .....+..+..
T Consensus       163 ~~~~~~~----~~~~~~~----~~v~~~~Dg~~~~~~~~~~~~~~---------------------~~-~~~~~~~~~~~  212 (368)
T d1mdah_         163 KSASCFH----IHPGAAA----THYLGSCPASLAASDLAAAPAAA---------------------GI-VGAQCTGAQNC  212 (368)
T ss_dssp             ECSSCCC----CEEEETT----EEECCCCTTSCEEEECCSSCCCC---------------------EE-CCCCSCTTSCB
T ss_pred             eccCcce----EccCCCc----eEEEEcCCCCEEEEEecCCceee---------------------ee-eeccccccccc
Confidence            4443332    1222221    67777888888888877643311                     11 01111222223


Q ss_pred             ceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeec------------CceeEEEEEeeCCCEEEEEEccC-----
Q 038577          266 KVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSIS------------REKITTAVFNELGNWLVFGCAKL-----  328 (860)
Q Consensus       266 ~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~------------~~~i~~~~~s~~~~~l~~~~~~~-----  328 (860)
                      .+....+.+++..+.  ...+.+.+++.............            ......+++++++..+++....+     
T Consensus       213 ~~~~~~~~~~g~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~  290 (368)
T d1mdah_         213 SSQAAQANYPGMLVW--AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCL  290 (368)
T ss_dssp             CSCCEEETTTTEEEE--CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTT
T ss_pred             ceeecccccCcEEEE--ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceee
Confidence            344455666655443  33455666665544333221110            11234588999998887765442     


Q ss_pred             ---CcEEEEEccCceEEEEecCcccCeEEEEEcCCCC--EEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEE
Q 038577          329 ---GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQ--LLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHF  399 (860)
Q Consensus       329 ---g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~  399 (860)
                         ..+.+||..+++.+..+. +...+.+++|+|||+  .++++..++.|++||..+++.+..+..... ...|++
T Consensus       291 ~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~-P~~l~~  364 (368)
T d1mdah_         291 AAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSV  364 (368)
T ss_dssp             SCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEEC
T ss_pred             cCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCC-CCEEEE
Confidence               358899999998877664 345688999999997  345667789999999999999998864332 444443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.66  E-value=3e-15  Score=154.63  Aligned_cols=284  Identities=8%  Similarity=-0.005  Sum_probs=191.7

Q ss_pred             eEEEEEeeCCCEEEEE--EccCC--cEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEe----------CCCcEE
Q 038577          309 ITTAVFNELGNWLVFG--CAKLG--QLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGA----------DDNKVK  374 (860)
Q Consensus       309 i~~~~~s~~~~~l~~~--~~~~g--~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~  374 (860)
                      ...++..++++...+.  ...++  .+.+||..+++.+.....+...  .++|+|||+.+++.+          .|+.|+
T Consensus        22 ~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~   99 (368)
T d1mdah_          22 SCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVE   99 (368)
T ss_dssp             CBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEE
T ss_pred             ccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEE
Confidence            3444556777764433  22334  4777799999998888766654  589999999988764          367899


Q ss_pred             EEECCCCeeEEEeecCCC-------ceEEEEEeeCCCEEEEEe-CCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCC
Q 038577          375 VWTVSSGFCFVTFTEHTN-------AVTALHFMANNHSLLSAS-LDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSG  446 (860)
Q Consensus       375 iwd~~~~~~~~~~~~~~~-------~v~~i~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (860)
                      +||..+++.+..+..+..       ....++|+|||++++++. .++.+.+||+.+++....+..+....+..    ...
T Consensus       100 v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~----~~~  175 (368)
T d1mdah_         100 VFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHP----GAA  175 (368)
T ss_dssp             EECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEE----EET
T ss_pred             EEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEcc----CCC
Confidence            999999999888765432       234689999999988775 57899999999999888877654322111    112


Q ss_pred             CEEEEEecCCCeEEEEECCCCceEE------EecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcc---
Q 038577          447 EVICAGTLDSFEIFVWSMKTGRLLD------ILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFP---  517 (860)
Q Consensus       447 ~~l~~~~~~~~~i~v~d~~~~~~~~------~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---  517 (860)
                      ..++..+.|+ .+.++++.......      .+..+...+....+.+++..+.+.  .+.++++++...........   
T Consensus       176 ~~~v~~~~Dg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~  252 (368)
T d1mdah_         176 ATHYLGSCPA-SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGN  252 (368)
T ss_dssp             TEEECCCCTT-SCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSS
T ss_pred             ceEEEEcCCC-CEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccc
Confidence            2333334444 45555544332211      123344555667788887666543  45677777665542221110   


Q ss_pred             ---------cCCCeEEEEEeeCCCEEEEEeCC---------CeEEEEeCCCCceeEEEecccccCCCccccccccccccC
Q 038577          518 ---------HTHDVLTVVYRPDGRQLACSTLD---------GQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSS  579 (860)
Q Consensus       518 ---------~~~~v~~~~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  579 (860)
                               .......++++|++..+++...+         ..|.+||..+++.+..+.....                 
T Consensus       253 ~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~-----------------  315 (368)
T d1mdah_         253 ESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHD-----------------  315 (368)
T ss_dssp             CTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEE-----------------
T ss_pred             cceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCc-----------------
Confidence                     11223457899999887766432         3599999999999888876543                 


Q ss_pred             CCCcEEEEEEecCCC-E-EEEecCCCeEEEEECCCceEEEEEeec
Q 038577          580 SGKCFTTLCYSADGS-Y-ILAGGSSKYICMYDVADQVLLRRFQIT  622 (860)
Q Consensus       580 ~~~~i~~l~~s~~g~-~-l~~~~~dg~v~vwd~~~~~~~~~~~~~  622 (860)
                          +.+++|||||+ + ++++..++.|++||..+++.+++++..
T Consensus       316 ----~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g  356 (368)
T d1mdah_         316 ----SDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             ----ECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             ----eeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECC
Confidence                78999999997 3 456678899999999999999877643

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.64  E-value=7.3e-16  Score=155.95  Aligned_cols=301  Identities=10%  Similarity=0.015  Sum_probs=202.6

Q ss_pred             EEEEEcCCeEEEEECCCceeEEEEeecC------------------------------ceeEEEEEeeCCCEEEEEEccC
Q 038577          279 VVVGFSNGVFGLYQMPDFVCIHLLSISR------------------------------EKITTAVFNELGNWLVFGCAKL  328 (860)
Q Consensus       279 l~~~~~~g~i~~~~~~~~~~~~~~~~~~------------------------------~~i~~~~~s~~~~~l~~~~~~~  328 (860)
                      +++|+.+|.|++|++++++.+..+....                              .......++|||+++++....+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            5577789999999999999888764311                              1233444579999999998888


Q ss_pred             CcEEEEEccCceEEEEec-CcccCeEEEEEcCCCC--EEEEEeCCC-----------------cEEEEECCCCeeEEEee
Q 038577          329 GQLLVWEWRSESYILKQQ-GHYFDVNCLAYSPDSQ--LLATGADDN-----------------KVKVWTVSSGFCFVTFT  388 (860)
Q Consensus       329 g~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~--~l~~~~~dg-----------------~i~iwd~~~~~~~~~~~  388 (860)
                      +.|.++|+++++....+. .+...+..++|+|+|+  +++..+.+.                 .+..+|..+.+....+.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            999999999998877654 3566789999999998  444444332                 23557888887777665


Q ss_pred             cCCCceEEEEEeeCCCEEEEEeCCC-cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCC
Q 038577          389 EHTNAVTALHFMANNHSLLSASLDG-TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTG  467 (860)
Q Consensus       389 ~~~~~v~~i~~~~~~~~l~s~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~  467 (860)
                      .. ..+..+.++|+|+++++.+.+. .+..++..+.+....+....  ......++|+|+++.++. ++ .+.+++....
T Consensus       174 v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n--~p~~~~~~~dGk~~~v~~-~~-v~vvd~~~~~  248 (441)
T d1qnia2         174 VD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFN--VERIAAAVKAGNFKTIGD-SK-VPVVDGRGES  248 (441)
T ss_dssp             ES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEE--HHHHHHHHHTTCCBCCTT-CC-CCEEECSSSC
T ss_pred             cC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCC--ccceEEEecCCCEEEeCC-CC-cEEEEcccCC
Confidence            43 4578899999999998887654 33333333333222221110  112234578888876644 33 6777777777


Q ss_pred             ceEEEecCcccCeEEEEEcCCCCEEE-EEeCCCcEEEEEccCCcc-----------eeEEcccCCCeEEEEEeeCCCEEE
Q 038577          468 RLLDILSGHEGPVHGLVFSPTNATLA-SSSWDKTVRLWNVFEGKG-----------SVESFPHTHDVLTVVYRPDGRQLA  535 (860)
Q Consensus       468 ~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~-----------~~~~~~~~~~v~~~~~s~~~~~l~  535 (860)
                      +.+..+..... ...+.++|||++++ ++..+++|.+||+.+...           +.......-.....+|+++|..+.
T Consensus       249 ~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yt  327 (441)
T d1qnia2         249 EFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYT  327 (441)
T ss_dssp             SSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEE
T ss_pred             ceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEE
Confidence            78888876554 57899999999875 556799999999865321           111111223346678999999888


Q ss_pred             EEeCCCeEEEEeCCC----------CceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEec
Q 038577          536 CSTLDGQIHFWDPLN----------GELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGG  600 (860)
Q Consensus       536 ~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~  600 (860)
                      +...|..|..|++..          ...+..+..|-.               ..|...+.+.+++|||+||++++
T Consensus       328 s~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~---------------~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         328 TLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQ---------------PGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             EETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC---------------EEEEEETTTTSTTCCCCEEEEEE
T ss_pred             cccccceEEEeccchhhhhhccCCCceeEeccccccC---------------CCCCccccccccCCCCcEEEecC
Confidence            889999999999742          123334432211               01111245557899999999994

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.56  E-value=7e-16  Score=156.08  Aligned_cols=270  Identities=9%  Similarity=-0.055  Sum_probs=181.6

Q ss_pred             CceEEEEecCCCCEEEEEE-cCCeEEEEECCCceeEEEEeec-CceeEEEEEeeCCCEEEEEEccCCc------------
Q 038577          265 SKVTACDYHRGLDMVVVGF-SNGVFGLYQMPDFVCIHLLSIS-REKITTAVFNELGNWLVFGCAKLGQ------------  330 (860)
Q Consensus       265 ~~v~~~~~~~~~~~l~~~~-~~g~i~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~~~g~------------  330 (860)
                      ........+|||+++++.. .++.|.++|+.+++....+... ...+..++|+|+|+...+.+.....            
T Consensus        72 P~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~  151 (441)
T d1qnia2          72 PHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSL  151 (441)
T ss_dssp             CEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCG
T ss_pred             CCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccccc
Confidence            3455666789999987664 6789999999999998887754 5678999999999865444332233            


Q ss_pred             ------EEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCeeEEEeecCCCceEEEEEeeCC
Q 038577          331 ------LLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDN-KVKVWTVSSGFCFVTFTEHTNAVTALHFMANN  403 (860)
Q Consensus       331 ------i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~  403 (860)
                            +..+|..+.+...+.... .....++++|+|+++++.+.+. .+..++..+......+... .....+.+.|+|
T Consensus       152 ~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~-n~p~~~~~~~dG  229 (441)
T d1qnia2         152 DNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVF-NVERIAAAVKAG  229 (441)
T ss_dssp             GGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEE-EHHHHHHHHHTT
T ss_pred             ccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeC-CccceEEEecCC
Confidence                  345787777776666433 3577899999999998887653 3333333333222222111 111233456888


Q ss_pred             CEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCce-----------EEE
Q 038577          404 HSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRL-----------LDI  472 (860)
Q Consensus       404 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~-----------~~~  472 (860)
                      +++.. +.++.+.+++....+....++.+.  ....+.++|||+++++++....++.+||+.+.+.           +..
T Consensus       230 k~~~v-~~~~v~vvd~~~~~~v~~~IPvgk--sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~  306 (441)
T d1qnia2         230 NFKTI-GDSKVPVVDGRGESEFTRYIPVPK--NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVA  306 (441)
T ss_dssp             CCBCC-TTCCCCEEECSSSCSSEEEECCBS--SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEE
T ss_pred             CEEEe-CCCCcEEEEcccCCceEEEEeCCC--CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEe
Confidence            87654 446778888777767676666543  4578999999999988777666999999875221           111


Q ss_pred             ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCC---------cceeE-E-----cccCCCeEEEEEeeCCCEEEEE
Q 038577          473 LSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEG---------KGSVE-S-----FPHTHDVLTVVYRPDGRQLACS  537 (860)
Q Consensus       473 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~---------~~~~~-~-----~~~~~~v~~~~~s~~~~~l~~~  537 (860)
                      .....-.....+|.++|..+.+...|.+|..|++...         ..+.. +     .+|...+.+.+++|||++|+++
T Consensus       307 ~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~  386 (441)
T d1qnia2         307 EPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVL  386 (441)
T ss_dssp             CCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEE
T ss_pred             ecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEec
Confidence            1111122455689999988889999999999998421         11221 1     3566667777899999999999


Q ss_pred             eC
Q 038577          538 TL  539 (860)
Q Consensus       538 ~~  539 (860)
                      +.
T Consensus       387 ~k  388 (441)
T d1qnia2         387 SK  388 (441)
T ss_dssp             ES
T ss_pred             Cc
Confidence            43

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.3e-12  Score=133.95  Aligned_cols=366  Identities=13%  Similarity=0.107  Sum_probs=212.9

Q ss_pred             cEEEe-CCCEEEeeeCCeEEEEECCCCcEEeeccCC---ccCeeEEEEcCCCCEEEEEc---------CCCcEEEEEccc
Q 038577           17 NAVLS-QNTKLISPVGNRVSVTDLIKSKTVTLPVES---SSNICRIAVSPDGTFLLTVD---------ENQRCHFINLHC   83 (860)
Q Consensus        17 ~~~~s-dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h---~~~v~~va~spdg~~la~~~---------~d~~i~vwd~~~   83 (860)
                      +..|. |+.++....++.|.+||+.+++...++..+   ...+....|||||++++...         ..+.+.++|+.+
T Consensus        21 ~~~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          21 EAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CCEEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            35577 887776667788999999999876554332   24578889999999988763         347889999998


Q ss_pred             CeEEEEee---cCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCC-----------------
Q 038577           84 HVVLHRVR---FKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDK-----------------  143 (860)
Q Consensus        84 ~~~~~~~~---~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~-----------------  143 (860)
                      +.......   ....+....|||||+.||...++.|.+.+..++..      ...+..+..+.                 
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~------~~lt~~g~~~~i~nG~~d~vyeee~~~~  174 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQA------IRVVSTGKEGVIYNGLSDWLYEEEILKT  174 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCC------EEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred             CceeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCce------EEEecccCcceeeccccchhhhhhhccc
Confidence            87654433   24456779999999999999999999999887653      11111222221                 


Q ss_pred             eEEEEEcCCCCeEEEeec-CCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEee
Q 038577          144 VTALNWSPDSNYLLVGSK-DLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWG  222 (860)
Q Consensus       144 v~~l~~s~d~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~  222 (860)
                      -.++.|||||++||.... +..|..+.+... ..          .....+..+.+..-|.     .    .....+.+++
T Consensus       175 ~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~-~~----------~~~p~~~~~~Yp~~G~-----~----np~~~l~v~d  234 (465)
T d1xfda1         175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTY-TG----------SIYPTVKPYHYPKAGS-----E----NPSISLHVIG  234 (465)
T ss_dssp             SEEEEECTTSSEEEEEEEECTTSCEEEECCC-SS----------SSSCCCEEEECCBTTS-----C----CCEEEEEEEE
T ss_pred             cceEEECCCCCeEEEEEecccccceeecccc-cc----------cccceeeeeeccccCC-----C----CCceeEEEEe
Confidence            247789999999998753 445555554332 00          0111222333322222     0    0112466677


Q ss_pred             ecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcC----CeEEEEECCCcee
Q 038577          223 FSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSN----GVFGLYQMPDFVC  298 (860)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~----g~i~~~~~~~~~~  298 (860)
                      ++++...                      +..............+..+.|+|+++.++.....    ..+.++|..+++.
T Consensus       235 ~~~~~~~----------------------~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~  292 (465)
T d1xfda1         235 LNGPTHD----------------------LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC  292 (465)
T ss_dssp             SSSSCCC----------------------EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE
T ss_pred             cCCCcEE----------------------EEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcE
Confidence            7654321                      1111111111223346788999998866654432    3688899998887


Q ss_pred             EEEEeecCc-e----eEEEEEeeCCCEEEEE--EccC--CcEEEEEcc------CceEEEEecCcccCeEEE-EEcCCCC
Q 038577          299 IHLLSISRE-K----ITTAVFNELGNWLVFG--CAKL--GQLLVWEWR------SESYILKQQGHYFDVNCL-AYSPDSQ  362 (860)
Q Consensus       299 ~~~~~~~~~-~----i~~~~~s~~~~~l~~~--~~~~--g~i~v~d~~------~~~~~~~~~~~~~~v~~~-~~s~~~~  362 (860)
                      ...+..... .    -....|+++|+.+++.  ...+  +.+....+.      .+.....+....-.|..+ +|+++++
T Consensus       293 ~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~  372 (465)
T d1xfda1         293 TKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGN  372 (465)
T ss_dssp             EEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTT
T ss_pred             EEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCC
Confidence            665544322 1    2456899999876542  2222  344444332      222223333334445554 6888877


Q ss_pred             EEEE-EeCCC--cEEEEE--CCCCeeEEEee---cCCCceEEEEEeeCCCEEEEEeCC---CcEEEEEccccceeeEee
Q 038577          363 LLAT-GADDN--KVKVWT--VSSGFCFVTFT---EHTNAVTALHFMANNHSLLSASLD---GTVRAWDLFRYRNFRTFT  430 (860)
Q Consensus       363 ~l~~-~~~dg--~i~iwd--~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~  430 (860)
                      .+.. +..++  .-.+|.  +..+.....+.   ........+.|+|++++++.....   -.+.+++..+++.+..+.
T Consensus       373 ~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le  451 (465)
T d1xfda1         373 KIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLE  451 (465)
T ss_dssp             EEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEE
T ss_pred             EEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEc
Confidence            6654 43332  233444  33332222221   234456789999999988854432   245566655555554443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.37  E-value=8.9e-10  Score=111.66  Aligned_cols=296  Identities=11%  Similarity=0.044  Sum_probs=167.3

Q ss_pred             EEEEEc--CCeEEEEE--CCCceeE--EEEee-cCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEe--cCcc
Q 038577          279 VVVGFS--NGVFGLYQ--MPDFVCI--HLLSI-SREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ--QGHY  349 (860)
Q Consensus       279 l~~~~~--~g~i~~~~--~~~~~~~--~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~--~~~~  349 (860)
                      |++|+.  .+.|..+.  .++++..  ..... ....+..++|+++++.+.++..  +.+..|.+.........  ....
T Consensus         5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~--~~~~~~~i~~~~~~~~~~~~~~~   82 (365)
T d1jofa_           5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM--KKWSSFAVKSPTEIVHEASHPIG   82 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB--TEEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC--CcEEEEEEeCCCCeEEEeeecCC
Confidence            555643  44565544  4444332  22222 3445678999999999988764  66777766543222221  1122


Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEe
Q 038577          350 FDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTF  429 (860)
Q Consensus       350 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~  429 (860)
                      .....++++++++.+.....+                  .+...|....+.+++........+...++..     .....
T Consensus        83 ~~p~~v~~~~~~~~~~v~~a~------------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  139 (365)
T d1jofa_          83 GHPRANDADTNTRAIFLLAAK------------------QPPYAVYANPFYKFAGYGNVFSVSETGKLEK-----NVQNY  139 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECS------------------STTCCEEEEEESSSCCEEEEEEECTTCCEEE-----EEEEE
T ss_pred             CCcEEEEECCCCCEEEEEEec------------------CCCCEEEEeEccCCCCcceeEeeeecceecC-----cccCc
Confidence            334567788888754332211                  0122233333333332222221111111111     11112


Q ss_pred             eCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCC-CceE--EEe--cCcccCeEEEEEcCCCCEEEEEe-CCCcEEE
Q 038577          430 TTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT-GRLL--DIL--SGHEGPVHGLVFSPTNATLASSS-WDKTVRL  503 (860)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~-~~~~--~~~--~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~i  503 (860)
                      .......+.++.++|+|++++++......|.+|+... +...  ...  .........++|+|+++++.+.. .+++|.+
T Consensus       140 ~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v  219 (365)
T d1jofa_         140 EYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICE  219 (365)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEE
Confidence            2223345789999999999998877655899998654 3322  111  22345688999999999886655 5789999


Q ss_pred             EEccCCcceeEEc-------------------ccCCCeEEEEEeeCCCEEEEEeC------CCeEEEEeCCCCceeEEEe
Q 038577          504 WNVFEGKGSVESF-------------------PHTHDVLTVVYRPDGRQLACSTL------DGQIHFWDPLNGELMYTIE  558 (860)
Q Consensus       504 wd~~~~~~~~~~~-------------------~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~  558 (860)
                      |++..........                   .+......+.++|||++|+++..      .+.|..|++.....+....
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~  299 (365)
T d1jofa_         220 YVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL  299 (365)
T ss_dssp             EEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE
T ss_pred             EEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEe
Confidence            9987664321110                   11223567899999999988742      2347777765433222211


Q ss_pred             c-ccccCCCccccccccccccCCCCcEEEEEEec-CCCEEEEec-CCCeEEEEECCCce
Q 038577          559 G-RRDISGGRLMTDRRSAANSSSGKCFTTLCYSA-DGSYILAGG-SSKYICMYDVADQV  614 (860)
Q Consensus       559 ~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~~~~-~dg~v~vwd~~~~~  614 (860)
                      . ...               ...+.....++++| +|++|+++. .++.|.+|++....
T Consensus       300 ~~~~~---------------~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         300 FLSPT---------------PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEEEC---------------SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             EeeEE---------------EcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            1 110               11123457799998 899887765 67999999876554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=1.4e-09  Score=105.55  Aligned_cols=236  Identities=17%  Similarity=0.117  Sum_probs=157.0

Q ss_pred             eEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCC---CcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEE
Q 038577           33 RVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDEN---QRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIA  109 (860)
Q Consensus        33 ~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d---~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la  109 (860)
                      .|.|.|........+. .+...+...+|||||+.||.....   ..+.+.+..++.......+........|||||+.++
T Consensus        20 ~l~i~d~dG~~~~~l~-~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~   98 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA   98 (269)
T ss_dssp             EEEEEETTSCSCEEEE-EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             EEEEEcCCCCCcEEEe-cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeee
Confidence            5889898877666665 566778899999999999987543   357777888888777777888899999999999999


Q ss_pred             EE--eC--CeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEe-ecCCeEEEEeecccccCcccccceE
Q 038577          110 VG--TG--KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVG-SKDLAVRLFYVKEKLKGIHTNKPFL  184 (860)
Q Consensus       110 ~~--~~--~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~-~~dg~v~vwd~~~~~~~~~~~~~~~  184 (860)
                      ..  ..  ..+..+......        ...............+++++..++.. ..++...+|..... .    .....
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~-~----~~~~~  165 (269)
T d2hqsa1          99 FALSKTGSLNLYVMDLASGQ--------IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN-G----GAPQR  165 (269)
T ss_dssp             EEECTTSSCEEEEEETTTCC--------EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT-S----SCCEE
T ss_pred             EeeecCCccceeeccccccc--------ceeeeeccccccccccccccccceecccccCCceEeeeecc-c----cccee
Confidence            87  22  233333333332        23334455555667788887655544 44555555544433 1    13445


Q ss_pred             eecCCCcEEEEEEccCCCCCccceEEEEc-CCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCC
Q 038577          185 LLGHRDSVVGCFFSVDKKTDKVNRIYTIA-RDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQA  263 (860)
Q Consensus       185 ~~~h~~~i~~~~~~~~~~~~~~~~l~s~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (860)
                      +..+........|+|+++     .++..+ ..+...+|.......                      .      ......
T Consensus       166 ~~~~~~~~~~~~~spdg~-----~~~~~~~~~~~~~i~~~~~~~~----------------------~------~~~~~~  212 (269)
T d2hqsa1         166 ITWEGSQNQDADVSSDGK-----FMVMVSSNGGQQHIAKQDLATG----------------------G------VQVLSS  212 (269)
T ss_dssp             CCCSSSEEEEEEECTTSS-----EEEEEEECSSCEEEEEEETTTC----------------------C------EEECCC
T ss_pred             eecccccccccccccccc-----eeEEEeecCCceeeeEeecccc----------------------c------ceEeec
Confidence            556677778889999998     666554 445566665554322                      0      111123


Q ss_pred             CCceEEEEecCCCCEEEEEEcC---CeEEEEECCCceeEEEEeecCceeEEEEEee
Q 038577          264 PSKVTACDYHRGLDMVVVGFSN---GVFGLYQMPDFVCIHLLSISREKITTAVFNE  316 (860)
Q Consensus       264 ~~~v~~~~~~~~~~~l~~~~~~---g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~  316 (860)
                      ........|+|||+.|+..+..   ..+.++++..+. ...+......+...+|+|
T Consensus       213 ~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~-~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         213 TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             SSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECCCSSSEEEEEEECC
T ss_pred             CccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEEeCCCCcEEeEEeCC
Confidence            3455678899999998865543   468889996554 455666667788888887

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.32  E-value=6.6e-10  Score=112.64  Aligned_cols=284  Identities=10%  Similarity=0.062  Sum_probs=168.6

Q ss_pred             EEEECCCCcEEe---eccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEccc-CeEEEEe--ecCCceeEEEECCCCCEE
Q 038577           35 SVTDLIKSKTVT---LPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHC-HVVLHRV--RFKYPVNAILFSPNGKYI  108 (860)
Q Consensus        35 ~v~d~~~~~~~~---~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~-~~~~~~~--~~~~~v~~~~fspdg~~l  108 (860)
                      ..+|.++++...   ........+..|+|+|++++|.++.. +.+..|.+.. +..+...  ........++++|+++.+
T Consensus        19 ~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~   97 (365)
T d1jofa_          19 VQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAI   97 (365)
T ss_dssp             EEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEE
T ss_pred             EEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEE
Confidence            455667776522   22345566788999999999987764 5678887764 3333322  244567789999999854


Q ss_pred             --EEE--eCCeEEEEeCCCCCccccee---------EEEEE-eeccCCCeEEEEEcCCCCeEEEeec-CCeEEEEeeccc
Q 038577          109 --AVG--TGKLVQIWRSPGFKKEVFAF---------ELIRT-LADCNDKVTALNWSPDSNYLLVGSK-DLAVRLFYVKEK  173 (860)
Q Consensus       109 --a~~--~~~~i~iwd~~~~~~~~~~~---------~~~~~-~~~h~~~v~~l~~s~d~~~l~s~~~-dg~v~vwd~~~~  173 (860)
                        ++.  ..+.+..+...........+         ..... .......+.+++|+|||+++++++. ...|.+|+....
T Consensus        98 ~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~  177 (365)
T d1jofa_          98 FLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLAS  177 (365)
T ss_dssp             EEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             EEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCC
Confidence              333  34566655443211100000         01111 1112334789999999998888764 357888876644


Q ss_pred             ccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEc-CCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeE
Q 038577          174 LKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIA-RDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKW  252 (860)
Q Consensus       174 ~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (860)
                       ....................++|+|+++     ++++.. .+++|.+|+.+..........               ...
T Consensus       178 -g~~~~~~~~~~~~~g~gPr~i~f~pdg~-----~~yv~~e~~~~V~v~~~~~~~~~~~~~~---------------~~~  236 (365)
T d1jofa_         178 -GEVELVGSVDAPDPGDHPRWVAMHPTGN-----YLYALMEAGNRICEYVIDPATHMPVYTH---------------HSF  236 (365)
T ss_dssp             -SCEEEEEEEECSSTTCCEEEEEECTTSS-----EEEEEETTTTEEEEEEECTTTCCEEEEE---------------EEE
T ss_pred             -CceeeccceeecCCCCceEEEEECCCCc-----eEEEeccCCCEEEEEEecCCCceEEEEe---------------eee
Confidence             1111111112223456789999999998     776555 578999999976543111000               000


Q ss_pred             Eeee------eccccCCCCceEEEEecCCCCEEEEEEcC------CeEEEEECCCceeEEE---E---eecCceeEEEEE
Q 038577          253 GLLR------KDDFSQAPSKVTACDYHRGLDMVVVGFSN------GVFGLYQMPDFVCIHL---L---SISREKITTAVF  314 (860)
Q Consensus       253 ~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~------g~i~~~~~~~~~~~~~---~---~~~~~~i~~~~~  314 (860)
                      .+..      .............+.++|+|++++++...      +.|..|++.....+..   +   .........+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~  316 (365)
T d1jofa_         237 PLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSP  316 (365)
T ss_dssp             ESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEE
T ss_pred             ccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEe
Confidence            0000      00111222345678999999999887542      3477777754322221   1   112335677999


Q ss_pred             ee-CCCEEEEEEccCCcEEEEEccCce
Q 038577          315 NE-LGNWLVFGCAKLGQLLVWEWRSES  340 (860)
Q Consensus       315 s~-~~~~l~~~~~~~g~i~v~d~~~~~  340 (860)
                      +| +|++|+++...++.|.+|++....
T Consensus       317 ~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         317 CPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             CTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             cCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            98 899999998888999999876554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=1.5e-09  Score=105.32  Aligned_cols=235  Identities=13%  Similarity=0.073  Sum_probs=152.7

Q ss_pred             eEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCC--cEEEEEccCceEEEEecCcccCeEEEEEcCCCCEE
Q 038577          287 VFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLG--QLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLL  364 (860)
Q Consensus       287 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g--~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  364 (860)
                      .|.+.|.. +.....+......+...+|||||+.|++.....+  .+.+.+...+... .+..+........|+|+|+.+
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEE
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCee
Confidence            57777874 4445555555677889999999999999877644  4555666555543 334566778889999999998


Q ss_pred             EEEeC-CCc--EEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEE-EEeCCCcE--EEEEccccceeeEeeCCCCCcEE
Q 038577          365 ATGAD-DNK--VKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLL-SASLDGTV--RAWDLFRYRNFRTFTTPSSRQFV  438 (860)
Q Consensus       365 ~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg~i--~~wd~~~~~~~~~~~~~~~~~~~  438 (860)
                      +.... ++.  +..+...... ...............+++++..+. +...+|..  ...++.....  ...........
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~--~~~~~~~~~~~  174 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQ-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP--QRITWEGSQNQ  174 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCC-EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC--EECCCSSSEEE
T ss_pred             eEeeecCCccceeeccccccc-ceeeeeccccccccccccccccceecccccCCceEeeeecccccc--eeeeccccccc
Confidence            87664 222  2333332222 333333444555566777766554 44455554  4444444332  22233445677


Q ss_pred             EEEECCCCCEEEEEecCCCe--EEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCC---CcEEEEEccCCccee
Q 038577          439 SLASDQSGEVICAGTLDSFE--IFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWD---KTVRLWNVFEGKGSV  513 (860)
Q Consensus       439 ~~~~~~~~~~l~~~~~~~~~--i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~  513 (860)
                      ...++|+++.++....+++.  +.+.+...+..  ....+........|||||++|+..+..   ..++++++..+. ..
T Consensus       175 ~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~-~~  251 (269)
T d2hqsa1         175 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KA  251 (269)
T ss_dssp             EEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EE
T ss_pred             ccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC-EE
Confidence            88999999999988776654  44445554443  333456667888999999998866543   468899998765 55


Q ss_pred             EEcccCCCeEEEEEee
Q 038577          514 ESFPHTHDVLTVVYRP  529 (860)
Q Consensus       514 ~~~~~~~~v~~~~~s~  529 (860)
                      .+....+.+...+|||
T Consensus       252 ~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         252 RLPATDGQVKFPAWSP  267 (269)
T ss_dssp             ECCCSSSEEEEEEECC
T ss_pred             EEeCCCCcEEeEEeCC
Confidence            5666677788899998

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.9e-09  Score=112.66  Aligned_cols=363  Identities=12%  Similarity=0.044  Sum_probs=205.7

Q ss_pred             EEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee----cCCceeEEEECCCCCEEEEEe----------CCeEEEEeCCC
Q 038577           58 IAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR----FKYPVNAILFSPNGKYIAVGT----------GKLVQIWRSPG  123 (860)
Q Consensus        58 va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~----~~~~v~~~~fspdg~~la~~~----------~~~i~iwd~~~  123 (860)
                      ..|.+++.++. -..+|.+.+||+.+++....+.    ....+....|||||++|+...          .+.+.++|+.+
T Consensus        22 ~~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            35888888664 3557899999999887654444    234678889999999988873          36789999998


Q ss_pred             CCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCc------------
Q 038577          124 FKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDS------------  191 (860)
Q Consensus       124 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~------------  191 (860)
                      +...     .+.........+....|||||+.+|... ++.+.+.+...+ ..    ...+..+..+.            
T Consensus       101 ~~~~-----~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~-~~----~~lt~~g~~~~i~nG~~d~vyee  169 (465)
T d1xfda1         101 GDPQ-----SLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGK-QA----IRVVSTGKEGVIYNGLSDWLYEE  169 (465)
T ss_dssp             CCCE-----ECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSS-CC----EEEECCCBTTTEEEEECCHHHHH
T ss_pred             Ccee-----eccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCC-ce----EEEecccCcceeeccccchhhhh
Confidence            8631     1111122344566789999999999876 567888877665 11    11111121111            


Q ss_pred             -----EEEEEEccCCCCCccceEEEEcCC-ccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCC
Q 038577          192 -----VVGCFFSVDKKTDKVNRIYTIARD-CYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPS  265 (860)
Q Consensus       192 -----i~~~~~~~~~~~~~~~~l~s~~~d-g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (860)
                           -.++.|||||+     +|+....| ..+..+.+.....                                 ....
T Consensus       170 e~~~~~~a~~WSPDgk-----~iaf~~~D~s~V~~~~~~~~~~---------------------------------~~~p  211 (465)
T d1xfda1         170 EILKTHIAHWWSPDGT-----RLAYAAINDSRVPIMELPTYTG---------------------------------SIYP  211 (465)
T ss_dssp             TTSSSSEEEEECTTSS-----EEEEEEEECTTSCEEEECCCSS---------------------------------SSSC
T ss_pred             hhccccceEEECCCCC-----eEEEEEecccccceeecccccc---------------------------------cccc
Confidence                 24678999999     88876533 3344443322100                                 0001


Q ss_pred             ceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEe------ecCceeEEEEEeeCCCEEEEEEccC---CcEEEEEc
Q 038577          266 KVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLS------ISREKITTAVFNELGNWLVFGCAKL---GQLLVWEW  336 (860)
Q Consensus       266 ~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~------~~~~~i~~~~~s~~~~~l~~~~~~~---g~i~v~d~  336 (860)
                      .+..+.+...|..-    ....+.++++.++.......      ....-+..+.|+++++.++.....+   ..+.++|.
T Consensus       212 ~~~~~~Yp~~G~~n----p~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~  287 (465)
T d1xfda1         212 TVKPYHYPKAGSEN----PSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA  287 (465)
T ss_dssp             CCEEEECCBTTSCC----CEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEET
T ss_pred             eeeeeeccccCCCC----CceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcC
Confidence            11222221111110    01245667765544322211      1122467889999998776665543   25778899


Q ss_pred             cCceEEEEecCc-ccC----eEEEEEcCCCCEEEE---EeCCC--cEEEEECC------CCeeEEEeecCCCceEEE-EE
Q 038577          337 RSESYILKQQGH-YFD----VNCLAYSPDSQLLAT---GADDN--KVKVWTVS------SGFCFVTFTEHTNAVTAL-HF  399 (860)
Q Consensus       337 ~~~~~~~~~~~~-~~~----v~~~~~s~~~~~l~~---~~~dg--~i~iwd~~------~~~~~~~~~~~~~~v~~i-~~  399 (860)
                      .+++.......+ ...    -....|+++|+.++.   ...+|  .+....+.      .+.....+....-.|..+ .|
T Consensus       288 ~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~  367 (465)
T d1xfda1         288 TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAY  367 (465)
T ss_dssp             TTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEE
T ss_pred             CCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEE
Confidence            888766544322 111    234578999985432   22233  33333321      233334444444456665 57


Q ss_pred             eeCCCEEE-EEeCCC--cEEEEEc--cccceeeEee--CCCCCcEEEEEECCCCCEEEEEecCC--CeEEEEECCCCceE
Q 038577          400 MANNHSLL-SASLDG--TVRAWDL--FRYRNFRTFT--TPSSRQFVSLASDQSGEVICAGTLDS--FEIFVWSMKTGRLL  470 (860)
Q Consensus       400 ~~~~~~l~-s~~~dg--~i~~wd~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~--~~i~v~d~~~~~~~  470 (860)
                      +++++.+. ++..++  .-.+|.+  ......+.+.  .........+.|||++++++..+...  -.+.+++..+++.+
T Consensus       368 d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~  447 (465)
T d1xfda1         368 DEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKM  447 (465)
T ss_dssp             ETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEE
T ss_pred             cCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEE
Confidence            88776665 444332  2234444  3333333222  12233457899999999998665542  26777887778877


Q ss_pred             EEec
Q 038577          471 DILS  474 (860)
Q Consensus       471 ~~~~  474 (860)
                      ..+.
T Consensus       448 ~~Le  451 (465)
T d1xfda1         448 FDLE  451 (465)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            7764

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.25  E-value=1.5e-09  Score=104.18  Aligned_cols=238  Identities=9%  Similarity=-0.031  Sum_probs=157.4

Q ss_pred             cCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeE
Q 038577          350 FDVNCLAYSPDSQLLATGA-DDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRT  428 (860)
Q Consensus       350 ~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~  428 (860)
                      .....+++.++|+..++.. ..+.+..++............-......++++++++.+++....+.+++++-.+....  
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~--   91 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTV--   91 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEE--
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceee--
Confidence            3468999999999777654 4567777765543333222222345678999999987777666666666554433332  


Q ss_pred             eeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 038577          429 FTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFE  508 (860)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~  508 (860)
                      ...........++++++++++++-..+. .+..++............-.....+++++|+++.+++...++.|..+|...
T Consensus        92 ~~~~~~~~p~~iavd~~g~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~  170 (260)
T d1rwia_          92 LPFDGLNYPEGLAVDTQGAVYVADRGNN-RVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES  170 (260)
T ss_dssp             CCCCSCCSEEEEEECTTCCEEEEEGGGT-EEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred             eeeeeeeecccccccccceeEeeccccc-cccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccc
Confidence            2233334678999999999877665555 788888765544332222334567899999999888888888899999776


Q ss_pred             CcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEE
Q 038577          509 GKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLC  588 (860)
Q Consensus       509 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~  588 (860)
                      ................+++.++|+++++....+.|..++...... ..+....                   -.....|+
T Consensus       171 ~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~~-------------------~~~P~~i~  230 (260)
T d1rwia_         171 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTG-------------------LNTPLAVA  230 (260)
T ss_dssp             CCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECCCCS-------------------CCCEEEEE
T ss_pred             ceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEccCC-------------------CCCeEEEE
Confidence            543333334556678999999999888887788888888654422 2211110                   12368999


Q ss_pred             EecCCCEEEEecCCCeEEEEEC
Q 038577          589 YSADGSYILAGGSSKYICMYDV  610 (860)
Q Consensus       589 ~s~~g~~l~~~~~dg~v~vwd~  610 (860)
                      ++++|.++++-..+++|+.++.
T Consensus       231 ~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         231 VDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             ECTTCCEEEEEGGGTEEEEECC
T ss_pred             EeCCCCEEEEECCCCEEEEEeC
Confidence            9999998887777777765554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.21  E-value=1.9e-08  Score=97.54  Aligned_cols=239  Identities=9%  Similarity=0.158  Sum_probs=171.2

Q ss_pred             ceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecC------ceeEEEEEeeCC-CEEEEEEccCCcEEEEEccC
Q 038577          266 KVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISR------EKITTAVFNELG-NWLVFGCAKLGQLLVWEWRS  338 (860)
Q Consensus       266 ~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~------~~i~~~~~s~~~-~~l~~~~~~~g~i~v~d~~~  338 (860)
                      ....++++++++.+++-..+..|++||. +++.+..+....      .....+++.++. ..+++....++.|..++.. 
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence            4689999999998888788899999997 566666553221      124456666554 4444444455677777754 


Q ss_pred             ceEEEEe-cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe--ecCCCceEEEEEeeCCCEEEEEeCCCcE
Q 038577          339 ESYILKQ-QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTF--TEHTNAVTALHFMANNHSLLSASLDGTV  415 (860)
Q Consensus       339 ~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~s~~~dg~i  415 (860)
                      +.....+ .........+++.++|..+++....+.+.+++.. ++.+..+  ..+......+++.++++.+++....+.|
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V  180 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV  180 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccce
Confidence            4444444 3345667899999999988888877888888854 5556554  3455678899999999888888888999


Q ss_pred             EEEEccccceeeEeeCC-CCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC--cccCeEEEEEcCCCCEE
Q 038577          416 RAWDLFRYRNFRTFTTP-SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG--HEGPVHGLVFSPTNATL  492 (860)
Q Consensus       416 ~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l  492 (860)
                      .+||. +++....+... .......++++++|+.+++-..++..|.+|+ .+|+.+..+..  .......+++.|+|.++
T Consensus       181 ~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~  258 (279)
T d1q7fa_         181 KVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVV  258 (279)
T ss_dssp             EEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEE
T ss_pred             eeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEE
Confidence            99996 45555555432 3345788999999997776555544799998 45888777643  23467899999999755


Q ss_pred             EEEeCCCcEEEEEccCCc
Q 038577          493 ASSSWDKTVRLWNVFEGK  510 (860)
Q Consensus       493 ~s~~~dg~i~iwd~~~~~  510 (860)
                      + ++.++.|++|......
T Consensus       259 V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         259 L-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             E-EETTTEEEEEECSCCC
T ss_pred             E-EeCCCeEEEEEeeeec
Confidence            5 5678999999987654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.20  E-value=2.7e-09  Score=102.37  Aligned_cols=238  Identities=11%  Similarity=0.056  Sum_probs=159.0

Q ss_pred             eeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 038577          308 KITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTF  387 (860)
Q Consensus       308 ~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  387 (860)
                      ....+++.++|+..++.....+.+..++............-......++++++|..+++....+.+++++..+...+...
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~   94 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF   94 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeee
Confidence            45789999999977766666577777766554333322222334678899999998877777666776665554444333


Q ss_pred             ecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCC
Q 038577          388 TEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTG  467 (860)
Q Consensus       388 ~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~  467 (860)
                      . ....+.++++.++++.+++-..+..+..++...... .............++++++|+++++...++ .|..++....
T Consensus        95 ~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~-~i~~~d~~~~  171 (260)
T d1rwia_          95 D-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-TVLPFTGLNDPDGVAVDNSGNVYVTDTDNN-RVVKLEAESN  171 (260)
T ss_dssp             C-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC-EECCCCSCCSCCEEEECTTCCEEEEEGGGT-EEEEECTTTC
T ss_pred             e-eeeecccccccccceeEeecccccccccccccccee-eeeeecccCCcceeeecCCCCEeeeccccc-cccccccccc
Confidence            2 335678999999998877766666677776544332 222222233457889999999777666666 8999998765


Q ss_pred             ceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEe
Q 038577          468 RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWD  547 (860)
Q Consensus       468 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  547 (860)
                      ...............+++.++|.++++....+.|..++.............-.....++++++|.++++-..++.|+.++
T Consensus       172 ~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         172 NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             CEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             eeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence            54443334556778999999999888887788888887655432222223335678999999998777766677777665


Q ss_pred             C
Q 038577          548 P  548 (860)
Q Consensus       548 ~  548 (860)
                      .
T Consensus       252 ~  252 (260)
T d1rwia_         252 S  252 (260)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.18  E-value=4.3e-08  Score=94.94  Aligned_cols=239  Identities=13%  Similarity=0.213  Sum_probs=170.8

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecC------CCceEEEEEeeCC-CEEEEE-eCCCcEEEEEcc
Q 038577          350 FDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEH------TNAVTALHFMANN-HSLLSA-SLDGTVRAWDLF  421 (860)
Q Consensus       350 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~i~~~~~~-~~l~s~-~~dg~i~~wd~~  421 (860)
                      .....++++++|+.+++-..++.|++||.+ ++.+..+...      ......+++.++. ..+++. +.++.|..++. 
T Consensus        23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-  100 (279)
T d1q7fa_          23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-  100 (279)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred             CCccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-
Confidence            346899999999988887778899999965 6666666321      1234566666554 334333 34456777765 


Q ss_pred             ccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEe--cCcccCeEEEEEcCCCCEEEEEeCCC
Q 038577          422 RYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDIL--SGHEGPVHGLVFSPTNATLASSSWDK  499 (860)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~--~~h~~~v~~l~~s~~~~~l~s~~~dg  499 (860)
                      .+.....+..........++++++|.++++..... .+.+++.. ++.+..+  ..+......+++.+++..+++....+
T Consensus       101 ~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~-~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~  178 (279)
T d1q7fa_         101 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVM-RVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH  178 (279)
T ss_dssp             TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTT-EEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGT
T ss_pred             cccceeecCCCcccccceeccccCCcEEEEeeccc-eeeEeccC-CceeecccccccccccceeeeccceeEEeeecccc
Confidence            56666666666666788999999999888776666 89999864 6666655  34566788999999999888888889


Q ss_pred             cEEEEEccCCcceeEEc--ccCCCeEEEEEeeCCCEEEEEeC-CCeEEEEeCCCCceeEEEecccccCCCcccccccccc
Q 038577          500 TVRLWNVFEGKGSVESF--PHTHDVLTVVYRPDGRQLACSTL-DGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAA  576 (860)
Q Consensus       500 ~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  576 (860)
                      .|++||... +....+.  +.......+++.++|+++++-.. ++.|.+|+. +|+.+.++.....              
T Consensus       179 ~V~~~d~~G-~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~--------------  242 (279)
T d1q7fa_         179 CVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVK--------------  242 (279)
T ss_dssp             EEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSC--------------
T ss_pred             ceeeeecCC-ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCC--------------
Confidence            999999644 4344432  24455789999999997766543 457999985 6888777754322              


Q ss_pred             ccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCc
Q 038577          577 NSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQ  613 (860)
Q Consensus       577 ~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~  613 (860)
                          ......+++.|||++++ ++.++.|++|.....
T Consensus       243 ----~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         243 ----HAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQL  274 (279)
T ss_dssp             ----CSCEEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred             ----CCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeee
Confidence                12478999999997655 457899999998764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.15  E-value=2.9e-08  Score=97.52  Aligned_cols=229  Identities=12%  Similarity=0.079  Sum_probs=158.9

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcccc--ceeeE
Q 038577          351 DVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRY--RNFRT  428 (860)
Q Consensus       351 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~--~~~~~  428 (860)
                      .+..++++|||+++++...+++|..|+... . ...+......+.+++|+++|+.+++...++.+..|+....  .....
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            478899999999999999899998888553 3 3344556788999999999998888888888888887543  23333


Q ss_pred             eeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC----------cccCeEEEEEcCCCCEEEEEeCC
Q 038577          429 FTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG----------HEGPVHGLVFSPTNATLASSSWD  498 (860)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~----------h~~~v~~l~~s~~~~~l~s~~~d  498 (860)
                      ...+.......+++.++|+++++...++ .++.++...+........          .......+.++. +.++++.+..
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~  184 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRG-AIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEK  184 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTT-EEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTT
T ss_pred             cccCCccccceeEEccCCCEEeeccccc-cceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCC
Confidence            3445556678999999998887777666 899999887754433221          112345666653 3345566677


Q ss_pred             CcEEEEEccCCccee--EEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCcccccccccc
Q 038577          499 KTVRLWNVFEGKGSV--ESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAA  576 (860)
Q Consensus       499 g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  576 (860)
                      +.|..++........  ...........++++++|+++++...++.|..++.. ++...........             
T Consensus       185 ~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~-------------  250 (302)
T d2p4oa1         185 MLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGV-------------  250 (302)
T ss_dssp             TEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTC-------------
T ss_pred             CeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCC-------------
Confidence            888888876543221  122233445679999999988888888999999875 4443333322221             


Q ss_pred             ccCCCCcEEEEEE---ecCCCEEEEecCC
Q 038577          577 NSSSGKCFTTLCY---SADGSYILAGGSS  602 (860)
Q Consensus       577 ~~~~~~~i~~l~~---s~~g~~l~~~~~d  602 (860)
                           ...++++|   ++|++.|+.++..
T Consensus       251 -----~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         251 -----IGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             -----TTEEEEEECCSTTTTTEEEEEECT
T ss_pred             -----CCceEEEEcCCCCCCCEEEEECCC
Confidence                 24799999   6788887765443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.14  E-value=2.4e-08  Score=98.08  Aligned_cols=252  Identities=11%  Similarity=0.046  Sum_probs=150.6

Q ss_pred             ccCeEEEEeecCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEee
Q 038577           82 HCHVVLHRVRFKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGS  160 (860)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~  160 (860)
                      ...+.+..+.....+..++++|||+++++. .++.|..|+..+..         ..+......+.+++|++||+++++..
T Consensus        16 ~~~~v~~~~p~~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~---------~~~~~~~~~~~gla~~~dG~l~v~~~   86 (302)
T d2p4oa1          16 APAKIITSFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ---------QIHATVEGKVSGLAFTSNGDLVATGW   86 (302)
T ss_dssp             CCEEEEEEECTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCE---------EEEEECSSEEEEEEECTTSCEEEEEE
T ss_pred             CcccEEEECCCCCCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE---------EEEEcCCCCcceEEEcCCCCeEEEec
Confidence            344556666655568899999999998888 67888888866432         34455667889999999999888888


Q ss_pred             cCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCC
Q 038577          161 KDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPP  240 (860)
Q Consensus       161 ~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~  240 (860)
                      .++.+..|+.... ...  ...............+.+.+++.     .+++.+.++.+..++..++.             
T Consensus        87 ~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~n~i~~~~~g~-----~~v~~~~~~~i~~~~~~~~~-------------  145 (302)
T d2p4oa1          87 NADSIPVVSLVKS-DGT--VETLLTLPDAIFLNGITPLSDTQ-----YLTADSYRGAIWLIDVVQPS-------------  145 (302)
T ss_dssp             CTTSCEEEEEECT-TSC--EEEEEECTTCSCEEEEEESSSSE-----EEEEETTTTEEEEEETTTTE-------------
T ss_pred             CCceEEEEEeccc-ccc--eeeccccCCccccceeEEccCCC-----EEeeccccccceeeeccCCc-------------
Confidence            8888888887654 110  11111122344566677777765     55555555555444433210             


Q ss_pred             CCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCE
Q 038577          241 SPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNW  320 (860)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  320 (860)
                                                .......+...                     .............+  ..++..
T Consensus       146 --------------------------~~~~~~~~~~~---------------------~~~~~~~~~~~ngi--~~~~~~  176 (302)
T d2p4oa1         146 --------------------------GSIWLEHPMLA---------------------RSNSESVFPAANGL--KRFGNF  176 (302)
T ss_dssp             --------------------------EEEEEECGGGS---------------------CSSTTCCSCSEEEE--EEETTE
T ss_pred             --------------------------ceeEecCCccc---------------------eeeccCcccccccc--cccCCc
Confidence                                      00000000000                     00000011122333  445677


Q ss_pred             EEEEEccCCcEEEEEccCceEEEE--ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCee-EEEeecCCCceEEE
Q 038577          321 LVFGCAKLGQLLVWEWRSESYILK--QQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFC-FVTFTEHTNAVTAL  397 (860)
Q Consensus       321 l~~~~~~~g~i~v~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~i  397 (860)
                      +..+....+.|..++.........  ..........+++.++|++.++...++.|..++...... +......-..++++
T Consensus       177 l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~v  256 (302)
T d2p4oa1         177 LYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAV  256 (302)
T ss_dssp             EEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEE
T ss_pred             eeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEE
Confidence            777777778888888765432111  111223456799999999888888889999998754322 22333344568999


Q ss_pred             EE---eeCCCEEEEEeCC
Q 038577          398 HF---MANNHSLLSASLD  412 (860)
Q Consensus       398 ~~---~~~~~~l~s~~~d  412 (860)
                      +|   .+|++.|+.++..
T Consensus       257 afg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         257 AFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EECCSTTTTTEEEEEECT
T ss_pred             EEcCCCCCCCEEEEECCC
Confidence            99   5677777766544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.14  E-value=4.9e-08  Score=95.90  Aligned_cols=240  Identities=8%  Similarity=0.076  Sum_probs=159.0

Q ss_pred             CeEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCeeEEEeecC----CCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 038577          351 DVNCLAYSPDSQLLATGAD-------DNKVKVWTVSSGFCFVTFTEH----TNAVTALHFMANNHSLLSASLDGTVRAWD  419 (860)
Q Consensus       351 ~v~~~~~s~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~----~~~v~~i~~~~~~~~l~s~~~dg~i~~wd  419 (860)
                      ....++|.++|++.++...       +|.|..||..++.........    ......++|.++++.++++...+.+..++
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~   98 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ   98 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence            3567899999997776433       467889998877654433221    23467899999998888888777788888


Q ss_pred             ccccceeeEeeCCCC---CcEEEEEECCCCCEEEEEecC--------------CCeEEEEECCCCceEEEecCcccCeEE
Q 038577          420 LFRYRNFRTFTTPSS---RQFVSLASDQSGEVICAGTLD--------------SFEIFVWSMKTGRLLDILSGHEGPVHG  482 (860)
Q Consensus       420 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~--------------~~~i~v~d~~~~~~~~~~~~h~~~v~~  482 (860)
                      ...............   .....++++++|++.++....              .+.++.++.. ++...... .....+.
T Consensus        99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~-~~~~pNG  176 (314)
T d1pjxa_          99 TDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-AFQFPNG  176 (314)
T ss_dssp             TTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-EESSEEE
T ss_pred             CCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeC-Ccceeee
Confidence            765433221111111   124678999999988764321              1245555543 44333322 3344578


Q ss_pred             EEEcCCCC-----EEEEEeCCCcEEEEEccCCcceeE--E---c--ccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCC
Q 038577          483 LVFSPTNA-----TLASSSWDKTVRLWNVFEGKGSVE--S---F--PHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLN  550 (860)
Q Consensus       483 l~~s~~~~-----~l~s~~~dg~i~iwd~~~~~~~~~--~---~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  550 (860)
                      ++|+|++.     +.++-+..+.|..||+.....+..  .   .  ........+++.++|++.++....+.|.+||...
T Consensus       177 i~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~  256 (314)
T d1pjxa_         177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG  256 (314)
T ss_dssp             EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC
T ss_pred             eEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCC
Confidence            99999764     444556678899998765432221  1   1  1223456899999999888888889999999988


Q ss_pred             CceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCE-EEEecCCCeEEEEECCC
Q 038577          551 GELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSY-ILAGGSSKYICMYDVAD  612 (860)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~-l~~~~~dg~v~vwd~~~  612 (860)
                      ++.+..+.....                    .+++++|.||++. .++.+.+|.|...++..
T Consensus       257 g~~~~~i~~p~~--------------------~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         257 GQPKMRIRCPFE--------------------KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             BSCSEEEECSSS--------------------CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CEEEEEEECCCC--------------------CEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            887776665432                    3799999999974 45666778887777643

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.11  E-value=7.1e-08  Score=94.76  Aligned_cols=239  Identities=11%  Similarity=0.041  Sum_probs=158.7

Q ss_pred             ceEEEEecCCCCEEEEEEc-------CCeEEEEECCCceeEEEEeec----CceeEEEEEeeCCCEEEEEEccCCcEEEE
Q 038577          266 KVTACDYHRGLDMVVVGFS-------NGVFGLYQMPDFVCIHLLSIS----REKITTAVFNELGNWLVFGCAKLGQLLVW  334 (860)
Q Consensus       266 ~v~~~~~~~~~~~l~~~~~-------~g~i~~~~~~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~~~~~~g~i~v~  334 (860)
                      ....++|.|+|++.++...       +|.|..|+..++.........    ......++|.++|+.++++... ..+...
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~-~~i~~~   97 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-LGLLVV   97 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-TEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECC-CeEEEE
Confidence            4567899999997776432       467999998777654432221    1235689999999988887665 668888


Q ss_pred             EccCceEEEEecCcc----cCeEEEEEcCCCCEEEEEeC---------------CCcEEEEECCCCeeEEEeecCCCceE
Q 038577          335 EWRSESYILKQQGHY----FDVNCLAYSPDSQLLATGAD---------------DNKVKVWTVSSGFCFVTFTEHTNAVT  395 (860)
Q Consensus       335 d~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~v~  395 (860)
                      +...+..........    ...+.+++.++|.+.++-..               .|.|..++.. ++... +...-....
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~-~~~~~~~pN  175 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDTAFQFPN  175 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEEEESSEE
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeE-eeCCcceee
Confidence            876654332221111    13577999999988776432               2344444432 33332 223334467


Q ss_pred             EEEEeeCCC-----EEEEEeCCCcEEEEEccccceee------EeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEEC
Q 038577          396 ALHFMANNH-----SLLSASLDGTVRAWDLFRYRNFR------TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSM  464 (860)
Q Consensus       396 ~i~~~~~~~-----~l~s~~~dg~i~~wd~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~  464 (860)
                      .++|++++.     .+++-+..+.|..|++.....+.      .+..........++++.+|++.++....+ .|++||.
T Consensus       176 Gi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g-~I~~~dp  254 (314)
T d1pjxa_         176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS-HIEVFGP  254 (314)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT-EEEEECT
T ss_pred             eeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCC-EEEEEeC
Confidence            899999764     44555677889999876443222      12222233467899999999776665555 9999999


Q ss_pred             CCCceEEEecCcccCeEEEEEcCCCCE-EEEEeCCCcEEEEEccC
Q 038577          465 KTGRLLDILSGHEGPVHGLVFSPTNAT-LASSSWDKTVRLWNVFE  508 (860)
Q Consensus       465 ~~~~~~~~~~~h~~~v~~l~~s~~~~~-l~s~~~dg~i~iwd~~~  508 (860)
                      +.++....+..+...+++++|.|+++. +++.+.+|.|...++..
T Consensus       255 ~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         255 DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            988887777766678899999999875 56666778888877643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.04  E-value=5.9e-07  Score=88.42  Aligned_cols=236  Identities=9%  Similarity=0.024  Sum_probs=157.8

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCC----CcEEEEEccccce
Q 038577          350 FDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD----GTVRAWDLFRYRN  425 (860)
Q Consensus       350 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d----g~i~~wd~~~~~~  425 (860)
                      ..+..++|.++|++.++-...+.|..|+..++.....+.........++++++|+.+++...+    +.+...+......
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence            345789999999987777788999999988777666666667788999999999877765432    3345555444443


Q ss_pred             eeEeeC-CCCCcEEEEEECCCCCEEEEEecC-----CCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEE-eCC
Q 038577          426 FRTFTT-PSSRQFVSLASDQSGEVICAGTLD-----SFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASS-SWD  498 (860)
Q Consensus       426 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~-----~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~d  498 (860)
                      ...... ........++++++|++.++....     .+.++.++...+. +..+...-...+.++|+|+++.|..+ +..
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~lyvad~~~  198 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLWVTETTA  198 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred             eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccceEEEecccC
Confidence            333322 223457789999999976654321     1246666655433 33333234456789999999876544 567


Q ss_pred             CcEEEEEccCCcceeE--------EcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCcccc
Q 038577          499 KTVRLWNVFEGKGSVE--------SFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMT  570 (860)
Q Consensus       499 g~i~iwd~~~~~~~~~--------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  570 (860)
                      +.|..|++........        ..........+++.++|++.++....+.|.+||. +|+.+..+......       
T Consensus       199 ~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~-------  270 (319)
T d2dg1a1         199 NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRD-------  270 (319)
T ss_dssp             TEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGG-------
T ss_pred             CceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcC-------
Confidence            8999999864321111        1112233567999999998888888999999996 78888887653211       


Q ss_pred             ccccccccCCCCcEEEEEEecCCCEEEEecC
Q 038577          571 DRRSAANSSSGKCFTTLCYSADGSYILAGGS  601 (860)
Q Consensus       571 ~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~  601 (860)
                             ..+...+++++|.+++..+++...
T Consensus       271 -------~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         271 -------EGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             -------GTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             -------CCcCceeeeEEEeCCCCEEEEEcC
Confidence                   011123689999998887766543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.98  E-value=4.3e-08  Score=95.46  Aligned_cols=92  Identities=17%  Similarity=0.169  Sum_probs=72.5

Q ss_pred             EEe-C--CCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcC-C-----CcEEEEEcccCeEEEE
Q 038577           19 VLS-Q--NTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDE-N-----QRCHFINLHCHVVLHR   89 (860)
Q Consensus        19 ~~s-d--g~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~-d-----~~i~vwd~~~~~~~~~   89 (860)
                      .+| |  |+.+++..++.|.++|+.+++...+. .+.+.+...+|||||++||.... +     ..|.+++..+++..+.
T Consensus         5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~~Lt-~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCCDDLWEHDLKSGSTRKIV-SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEETTTCCEEEEE-CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             ccCCCCCCCEEEEEeCCcEEEEECCCCCEEEEe-cCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            367 8  99999999999999999999987665 56677899999999999997642 1     2477888888877654


Q ss_pred             eec-------CCceeEEEECCCCCEEEEE
Q 038577           90 VRF-------KYPVNAILFSPNGKYIAVG  111 (860)
Q Consensus        90 ~~~-------~~~v~~~~fspdg~~la~~  111 (860)
                      ...       .......+|+|||+.|+..
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             eecCCCccCccccccccccCCCCCEEEEE
Confidence            332       2345678999999999987

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.91  E-value=1.7e-06  Score=85.02  Aligned_cols=235  Identities=10%  Similarity=0.006  Sum_probs=149.7

Q ss_pred             cCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCC--cc
Q 038577          140 CNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARD--CY  217 (860)
Q Consensus       140 h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~d--g~  217 (860)
                      ....+..++|.++|++.++-...+.|..|+.++.      ...............+++.++|.     .+++...+  ..
T Consensus        38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~------~~~~~~~~~~~~p~gla~~~dG~-----l~va~~~~~~~~  106 (319)
T d2dg1a1          38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK------EIKRPFVSHKANPAAIKIHKDGR-----LFVCYLGDFKST  106 (319)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTC------CEEEEEECSSSSEEEEEECTTSC-----EEEEECTTSSSC
T ss_pred             CCcCcEeCEECCCCCEEEEECCCCEEEEEECCCC------eEEEEEeCCCCCeeEEEECCCCC-----EEEEecCCCccc
Confidence            3445678999999997777667888988887765      33444555666788999999997     55554332  23


Q ss_pred             EEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEc------CCeEEEE
Q 038577          218 MFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFS------NGVFGLY  291 (860)
Q Consensus       218 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------~g~i~~~  291 (860)
                      ..++........                     ...   .............+.+.++|++.++...      .+.+..+
T Consensus       107 ~~i~~~~~~~~~---------------------~~~---~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~  162 (319)
T d2dg1a1         107 GGIFAATENGDN---------------------LQD---IIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYV  162 (319)
T ss_dssp             CEEEEECTTSCS---------------------CEE---EECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEE
T ss_pred             eeEEEEcCCCce---------------------eee---eccCCCcccCCcceeEEeccceeecccccccccCcceeEEE
Confidence            333333322110                     000   0001112335678899999986555332      2345555


Q ss_pred             ECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc-e---EEE----EecCcccCeEEEEEcCCCCE
Q 038577          292 QMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE-S---YIL----KQQGHYFDVNCLAYSPDSQL  363 (860)
Q Consensus       292 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~-~---~~~----~~~~~~~~v~~~~~s~~~~~  363 (860)
                      +.. +..+..+...-.....++|+|+++.|.++....+.|..|++... .   ...    ...........+++.++|++
T Consensus       163 ~~d-g~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l  241 (319)
T d2dg1a1         163 SPD-FRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNL  241 (319)
T ss_dssp             CTT-SCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCE
T ss_pred             ecc-cceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCE
Confidence            553 33333333333456789999999999888877799999987532 1   111    11111223567999999998


Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEeec------CCCceEEEEEeeCCCEEEEEeC
Q 038577          364 LATGADDNKVKVWTVSSGFCFVTFTE------HTNAVTALHFMANNHSLLSASL  411 (860)
Q Consensus       364 l~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~v~~i~~~~~~~~l~s~~~  411 (860)
                      .++....+.|.+|+. .|+.+..+..      +...+++++|.+++..+++...
T Consensus       242 ~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         242 YVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             EEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             EEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            888888999999995 6888777642      3346789999888776665543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.79  E-value=4.3e-06  Score=80.81  Aligned_cols=231  Identities=10%  Similarity=0.030  Sum_probs=155.7

Q ss_pred             EEEEcCCCCEEEEEc-CCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEE
Q 038577           57 RIAVSPDGTFLLTVD-ENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIR  135 (860)
Q Consensus        57 ~va~spdg~~la~~~-~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~  135 (860)
                      +..|++....|...+ ..+.|..||..+++. ..+..+..+.++++.++|.++++. ...+.++|..+++..     .+.
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~dg~l~va~-~~gl~~~d~~tg~~~-----~l~   94 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRK-TVHALPFMGSALAKISDSKQLIAS-DDGLFLRDTATGVLT-----LHA   94 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEE-TTEEEEEETTTCCEE-----EEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeE-EEEECCCCcEEEEEecCCCEEEEE-eCccEEeecccceee-----EEe
Confidence            456777555455443 568899999988865 345667889999999999888765 457999999988621     111


Q ss_pred             Eeecc--CCCeEEEEEcCCCCeEEEeec----CCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceE
Q 038577          136 TLADC--NDKVTALNWSPDSNYLLVGSK----DLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRI  209 (860)
Q Consensus       136 ~~~~h--~~~v~~l~~s~d~~~l~s~~~----dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l  209 (860)
                      .....  ...++.+.+.|+|++.++...    .+.-.+|.+..+      . ...+...-.....++|+++++     .+
T Consensus        95 ~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g------~-~~~~~~~~~~~Ng~~~s~d~~-----~l  162 (295)
T d2ghsa1          95 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG------K-VTKLFADISIPNSICFSPDGT-----TG  162 (295)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT------E-EEEEEEEESSEEEEEECTTSC-----EE
T ss_pred             eeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCC------c-EEEEeeccCCcceeeecCCCc-----eE
Confidence            11111  224788999999987666432    234556666655      2 222233344567899999998     55


Q ss_pred             -EEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeE
Q 038577          210 -YTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVF  288 (860)
Q Consensus       210 -~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i  288 (860)
                       ++-+..+.|..++++........               ....     .............+++..+|++.++....|.|
T Consensus       163 ~~~dt~~~~I~~~~~d~~~~~~~~---------------~~~~-----~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V  222 (295)
T d2ghsa1         163 YFVDTKVNRLMRVPLDARTGLPTG---------------KAEV-----FIDSTGIKGGMDGSVCDAEGHIWNARWGEGAV  222 (295)
T ss_dssp             EEEETTTCEEEEEEBCTTTCCBSS---------------CCEE-----EEECTTSSSEEEEEEECTTSCEEEEEETTTEE
T ss_pred             EEeecccceeeEeeeccccccccc---------------ceEE-----EeccCcccccccceEEcCCCCEEeeeeCCCce
Confidence             45566788888887643220000               0000     11223344567889999999988888888999


Q ss_pred             EEEECCCceeEEEEeecCceeEEEEEe-eCCCEEEEEEcc
Q 038577          289 GLYQMPDFVCIHLLSISREKITTAVFN-ELGNWLVFGCAK  327 (860)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~~  327 (860)
                      ..|+. +++.+..+......+++++|- ++.+.|++++..
T Consensus       223 ~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         223 DRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             EEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             EEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence            99995 788999998887889999996 677888777653

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.76  E-value=2.9e-07  Score=89.32  Aligned_cols=102  Identities=13%  Similarity=0.027  Sum_probs=68.4

Q ss_pred             EEECCC--CCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeec-C---C--eEEEEee
Q 038577           99 ILFSPN--GKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSK-D---L--AVRLFYV  170 (860)
Q Consensus        99 ~~fspd--g~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~-d---g--~v~vwd~  170 (860)
                      ...|||  |+.+|...++.|++.|+.+++        .+.+..+.+.+...+|||||+.||.... +   .  .|.+++.
T Consensus         4 ~~~sPdi~G~~v~f~~~~dl~~~d~~~g~--------~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~   75 (281)
T d1k32a2           4 LLLNPDIHGDRIIFVCCDDLWEHDLKSGS--------TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNG   75 (281)
T ss_dssp             CCEEEEEETTEEEEEETTEEEEEETTTCC--------EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEET
T ss_pred             cccCCCCCCCEEEEEeCCcEEEEECCCCC--------EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEe
Confidence            346899  999999999999999999887        3667778888999999999999987542 2   2  3555565


Q ss_pred             cccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEc
Q 038577          171 KEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIA  213 (860)
Q Consensus       171 ~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~  213 (860)
                      .++.......................|+|+++     .|+...
T Consensus        76 ~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~-----~l~~~~  113 (281)
T d1k32a2          76 ENGEIKRITYFSGKSTGRRMFTDVAGFDPDGN-----LIISTD  113 (281)
T ss_dssp             TTTEEEECCCCCEEEETTEECSEEEEECTTCC-----EEEEEC
T ss_pred             cCCceEEeeecCCCccCccccccccccCCCCC-----EEEEEE
Confidence            55511100001111122223456788999998     777653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.73  E-value=1.8e-05  Score=76.28  Aligned_cols=221  Identities=12%  Similarity=0.063  Sum_probs=151.1

Q ss_pred             EEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeec-
Q 038577          311 TAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTE-  389 (860)
Q Consensus       311 ~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-  389 (860)
                      +..|.+....|..+.-..+.|..||..+++.....  ....+.++++.++|.++++ +.+ .+..+|..+++....... 
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~--~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKTVHA--LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE--CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEE--CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence            45677766666666655689999999888654322  2346889999999876654 454 689999998876543321 


Q ss_pred             ---CCCceEEEEEeeCCCEEEEEeC----CCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEE
Q 038577          390 ---HTNAVTALHFMANNHSLLSASL----DGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVW  462 (860)
Q Consensus       390 ---~~~~v~~i~~~~~~~~l~s~~~----dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~  462 (860)
                         ....+..+.+.|+|+..++...    .+.-.+|.+..++.......  ......++++++++.++.+....+.|+.|
T Consensus        98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~--~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~  175 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD--ISIPNSICFSPDGTTGYFVDTKVNRLMRV  175 (295)
T ss_dssp             TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE--ESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred             cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec--cCCcceeeecCCCceEEEeecccceeeEe
Confidence               1235788999999987665542    23456677666654443332  22457899999999888887766699999


Q ss_pred             ECCCC------ce--EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEe-eCCCE
Q 038577          463 SMKTG------RL--LDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-PDGRQ  533 (860)
Q Consensus       463 d~~~~------~~--~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-~~~~~  533 (860)
                      ++...      +.  ...+.+..+....+++..+|.+.++.-..+.|..||. .++.+..+.-....+++++|- ||.+.
T Consensus       176 ~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~  254 (295)
T d2ghsa1         176 PLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASR  254 (295)
T ss_dssp             EBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCE
T ss_pred             eecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCE
Confidence            87521      11  2223344566788999999998877777888999995 566555555445678999996 67776


Q ss_pred             EEEEe
Q 038577          534 LACST  538 (860)
Q Consensus       534 l~~~~  538 (860)
                      |++.+
T Consensus       255 LyvTt  259 (295)
T d2ghsa1         255 LLVTS  259 (295)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66554

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.61  E-value=0.00019  Score=65.33  Aligned_cols=278  Identities=14%  Similarity=0.129  Sum_probs=183.3

Q ss_pred             cEEEeCCCEEEeee----CCeEEEEECCCCcE-EeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee
Q 038577           17 NAVLSQNTKLISPV----GNRVSVTDLIKSKT-VTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR   91 (860)
Q Consensus        17 ~~~~sdg~~l~~~~----~~~i~v~d~~~~~~-~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~   91 (860)
                      ++.+...++++.-.    .+.|.|.|+.++.. .+.+..-    -+.-.+|..+.||.-+ ..++.++|+++.+.+..+.
T Consensus        26 ~~T~ESDkyicVRe~~~~~~~VvIidl~n~~~~~Rrpi~A----dsAIMhP~~~IiALra-g~~LQiFnletK~klks~~  100 (327)
T d1utca2          26 TLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT  100 (327)
T ss_dssp             TEECSSSSEEEEEEEETTEEEEEEEETTSTTSCEEEECCC----SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE
T ss_pred             cEEEecCCEEEEEeccCCCceEEEEECCCCCcceecccch----hhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEE
Confidence            45555556777532    34799999987654 3333222    2445679999888755 4689999999999999999


Q ss_pred             cCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeecc----CCCeEEEEEcCCCCeEEEee-------
Q 038577           92 FKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADC----NDKVTALNWSPDSNYLLVGS-------  160 (860)
Q Consensus        92 ~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~s~d~~~l~s~~-------  160 (860)
                      ...+|.-=.|-. .+.|+...+..|+=|++++...   |   .+.+..|    ...|..-..++++++++..|       
T Consensus       101 ~~e~VvfWkWis-~~~L~lVT~taVYHW~~~g~s~---P---~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~  173 (327)
T d1utca2         101 MTDDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQ---P---VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR  173 (327)
T ss_dssp             CSSCCCEEEESS-SSEEEEECSSEEEEEESSSSCC---C---EEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTE
T ss_pred             cCCCcEEEEecC-CCEEEEEcCCceEEEcccCCCC---c---hhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCc
Confidence            899998888874 4678888899999999976432   2   3444444    34577788899999887643       


Q ss_pred             cCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcC---CccEEEeeecCCCCCCccccCCC
Q 038577          161 KDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR---DCYMFSWGFSGNDGKIDETMEDS  237 (860)
Q Consensus       161 ~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~---dg~i~~w~~~~~~~~~~~~~~~~  237 (860)
                      -.|.+.+|..+..       ....+.||.+....+.+..+.  .....++.+.+   .+.+.+-++......        
T Consensus       174 i~G~mQLYS~er~-------~sQ~ieGhaa~F~~~~~~g~~--~~~~lf~fa~r~~~~~kLhIiEig~~~~g--------  236 (327)
T d1utca2         174 VVGAMQLYSVDRK-------VSQPIEGHAASFAQFKMEGNA--EESTLFCFAVRGQAGGKLHIIEVGTPPTG--------  236 (327)
T ss_dssp             EEEEEEEEETTTT-------EEEEECCSEEEEEEECCTTCS--SCEEEEEEEEEETTEEEEEEEECSCCCTT--------
T ss_pred             eeEEEEEEEeccC-------cCccccceeeeeEEEEcCCCC--CCceEEEEEECCCCCcEEEEEEcCCCccC--------
Confidence            2367888988775       567888887776655543222  12223333322   256777776653210        


Q ss_pred             CCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeC
Q 038577          238 EPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNEL  317 (860)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  317 (860)
                          ..  ....+.-++.  .......+-..++..++.-..+.+-+.-|.+.+||+.++.++..-+...+.|...+-..+
T Consensus       237 ----~~--~f~kk~vdi~--fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~  308 (327)
T d1utca2         237 ----NQ--PFPKKAVDVF--FPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEA  308 (327)
T ss_dssp             ----CC--CCCCEEEECC--CCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETT
T ss_pred             ----CC--CCcceeEEEE--CCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCC
Confidence                00  0000011111  011123456778899999999999999999999999999999988888888776666665


Q ss_pred             CCEEEEEEccCCcEE
Q 038577          318 GNWLVFGCAKLGQLL  332 (860)
Q Consensus       318 ~~~l~~~~~~~g~i~  332 (860)
                      ..-++....+ |.+.
T Consensus       309 ~~Gi~~VNr~-GqVl  322 (327)
T d1utca2         309 TAGIIGVNRK-GQVL  322 (327)
T ss_dssp             TTEEEEEETT-SEEE
T ss_pred             CceEEEECCC-CeEE
Confidence            5555555443 5543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.32  E-value=0.0013  Score=61.27  Aligned_cols=236  Identities=11%  Similarity=0.044  Sum_probs=149.9

Q ss_pred             EEEEEeCCCcEEEEECCCCe-----eEEEeecCCCceEEEEEeeCCCEEEEE-eCCCcEEEEEccccceeeEeeCCCCCc
Q 038577          363 LLATGADDNKVKVWTVSSGF-----CFVTFTEHTNAVTALHFMANNHSLLSA-SLDGTVRAWDLFRYRNFRTFTTPSSRQ  436 (860)
Q Consensus       363 ~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~i~~~~~~~~l~s~-~~dg~i~~wd~~~~~~~~~~~~~~~~~  436 (860)
                      +|+.+.. +.|+-.+++...     ....+..+...+.+++|.+..+.+.-+ ..++.|+..++........ .......
T Consensus         3 fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v-~~~~~~~   80 (263)
T d1npea_           3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI-IRQDLGS   80 (263)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEE-ECTTCCC
T ss_pred             EEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEE-EEecccc
Confidence            4444333 467767765332     122233344567889998877666654 4567788888865544333 3333346


Q ss_pred             EEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCC-Cc--EEEEEccCCccee
Q 038577          437 FVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWD-KT--VRLWNVFEGKGSV  513 (860)
Q Consensus       437 ~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g~--i~iwd~~~~~~~~  513 (860)
                      +..++++.-+..|+.+....+.|.+.++........+......+..+++.|...++...... +.  |.--++.......
T Consensus        81 p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~  160 (263)
T d1npea_          81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI  160 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE
T ss_pred             ccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCcee
Confidence            78999998888888777766699999998665444444445678999999987777655432 23  4444554443333


Q ss_pred             EEcccCCCeEEEEEeeCCCEEEEEe-CCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecC
Q 038577          514 ESFPHTHDVLTVVYRPDGRQLACST-LDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSAD  592 (860)
Q Consensus       514 ~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  592 (860)
                      .....-.....+++.+.++.|+.+. ..+.|...+++.......+.+..                     ...++++.  
T Consensus       161 i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~---------------------~P~~lav~--  217 (263)
T d1npea_         161 LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ---------------------YPFAVTSY--  217 (263)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC---------------------SEEEEEEE--
T ss_pred             eeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC---------------------CcEEEEEE--
Confidence            2333445678999998888887664 56789999987554443333322                     24577775  


Q ss_pred             CCEEE-EecCCCeEEEEECCCceEEEEEeecc
Q 038577          593 GSYIL-AGGSSKYICMYDVADQVLLRRFQITH  623 (860)
Q Consensus       593 g~~l~-~~~~dg~v~vwd~~~~~~~~~~~~~~  623 (860)
                      +.+|. +-...+.|...|..+++.+..+....
T Consensus       218 ~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~  249 (263)
T d1npea_         218 GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK  249 (263)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEEEECCSS
T ss_pred             CCEEEEEECCCCEEEEEECCCCccceEECCCC
Confidence            44554 44467889999999998876664333

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=0.0016  Score=60.74  Aligned_cols=240  Identities=9%  Similarity=-0.023  Sum_probs=152.0

Q ss_pred             CeEEEEECCCce-----eEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCC
Q 038577          286 GVFGLYQMPDFV-----CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPD  360 (860)
Q Consensus       286 g~i~~~~~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~  360 (860)
                      +.|+-.+++...     ....+..+...+..++|.+..+.+..+....+.|+..++...............+.++++..-
T Consensus        10 ~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~   89 (263)
T d1npea_          10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL   89 (263)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT
T ss_pred             CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEecc
Confidence            355555553221     122333444567889999999999888777788999888776555444444456889999876


Q ss_pred             CCEEEEE-eCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCC-Cc--EEEEEccccceeeEeeCCCCCc
Q 038577          361 SQLLATG-ADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD-GT--VRAWDLFRYRNFRTFTTPSSRQ  436 (860)
Q Consensus       361 ~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d-g~--i~~wd~~~~~~~~~~~~~~~~~  436 (860)
                      +..|..+ ...+.|.+.++........+...-..+..+++.|...++.-.... +.  |..-++. +.....+....-..
T Consensus        90 ~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~d-G~~~~~i~~~~~~~  168 (263)
T d1npea_          90 GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTNRRILAQDNLGL  168 (263)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCCCEEEECTTCSC
T ss_pred             CCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCC-CCCceeeeeecccc
Confidence            6666544 456789999987665444444444678999999977666644322 23  4334443 33333444444456


Q ss_pred             EEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEE-EEeCCCcEEEEEccCCcceeEE
Q 038577          437 FVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLA-SSSWDKTVRLWNVFEGKGSVES  515 (860)
Q Consensus       437 ~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~  515 (860)
                      ...+++++.++.|+......+.|...++........+.+-. ...++++.  +.+|. +-...+.|...|..+++.....
T Consensus       169 P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTF  245 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEE
Confidence            78999999998888877655599999998665544444433 34578775  44554 4445678888888877655444


Q ss_pred             cc-cCCCeEEEEEee
Q 038577          516 FP-HTHDVLTVVYRP  529 (860)
Q Consensus       516 ~~-~~~~v~~~~~s~  529 (860)
                      .. .......++..+
T Consensus       246 ~~~~~~~~~gi~v~~  260 (263)
T d1npea_         246 HPHKQTRLYGITIAL  260 (263)
T ss_dssp             CCSSCCCCCCEEEEC
T ss_pred             CCCCCCCcceEEEeC
Confidence            32 223333444443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.24  E-value=0.00019  Score=69.32  Aligned_cols=240  Identities=8%  Similarity=0.055  Sum_probs=153.1

Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEeecC---------------------------------------CCceE--EEEEe--
Q 038577          364 LATGADDNKVKVWTVSSGFCFVTFTEH---------------------------------------TNAVT--ALHFM--  400 (860)
Q Consensus       364 l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------------------------------~~~v~--~i~~~--  400 (860)
                      +.+|+..|.|+++-+.+++.+..+.-.                                       .+...  .+.+.  
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            566778889999988888777655210                                       01111  34443  


Q ss_pred             -eCCCEEEEEe-CCCcEEEEEccccceeeEeeCCCCCcEEEEEEC--CCCCEEEEEecCC-----------------CeE
Q 038577          401 -ANNHSLLSAS-LDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASD--QSGEVICAGTLDS-----------------FEI  459 (860)
Q Consensus       401 -~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~-----------------~~i  459 (860)
                       +||++++... .+..|.+-|+.+.+..+.+..+....+..+...  |.-.+++..+...                 +.+
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence             3788877665 678899999999999887777777777777665  4556777766532                 146


Q ss_pred             EEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCC---------------cEEEE--------------------
Q 038577          460 FVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDK---------------TVRLW--------------------  504 (860)
Q Consensus       460 ~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg---------------~i~iw--------------------  504 (860)
                      ..+|..+.+....+.- .+....+.++|+|+++++.+.+.               .+.++                    
T Consensus       176 t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV  254 (459)
T d1fwxa2         176 TAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  254 (459)
T ss_dssp             EEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCc
Confidence            7789988887766652 34567899999999998877531               13333                    


Q ss_pred             ---EccC--CcceeEEcccCCCeEEEEEeeCCCEEEEEeC-CCeEEEEeCCCCceeEEEecccccCCCcccccccccccc
Q 038577          505 ---NVFE--GKGSVESFPHTHDVLTVVYRPDGRQLACSTL-DGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANS  578 (860)
Q Consensus       505 ---d~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  578 (860)
                         |...  +.......+-......+.++|||+++++++. +.++.|+|++.-..+.  ....+.       ........
T Consensus       255 ~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~--~~~~~~-------~~~~~~e~  325 (459)
T d1fwxa2         255 KVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF--YENADP-------RSAVVAEP  325 (459)
T ss_dssp             EEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH--HSCC-G-------GGGEEECC
T ss_pred             eeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhh--cccCCc-------cccEEeec
Confidence               3322  1112222333344566899999999888764 7889999986432211  000000       00011112


Q ss_pred             CCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCc
Q 038577          579 SSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQ  613 (860)
Q Consensus       579 ~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~  613 (860)
                      ..+.....-+|+..|.-..+---|..|.-|++...
T Consensus       326 elglgPLht~fd~~g~aytslfids~v~kw~~~~~  360 (459)
T d1fwxa2         326 ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDA  360 (459)
T ss_dssp             BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHH
T ss_pred             ccCcCccccccCCCceEEEEeeccceEEEEecchh
Confidence            23445678899998876666678999999998643

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.23  E-value=0.0014  Score=63.22  Aligned_cols=227  Identities=9%  Similarity=0.010  Sum_probs=149.2

Q ss_pred             EEEEEcCCeEEEEECCCceeEEEEeecC---------------------------------------cee--EEEEEe--
Q 038577          279 VVVGFSNGVFGLYQMPDFVCIHLLSISR---------------------------------------EKI--TTAVFN--  315 (860)
Q Consensus       279 l~~~~~~g~i~~~~~~~~~~~~~~~~~~---------------------------------------~~i--~~~~~s--  315 (860)
                      +.+|+..|.++++-+++++.+..+....                                       +..  ..+.+.  
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            5578889999999998887776654221                                       111  234444  


Q ss_pred             -eCCCEEEEEEccCCcEEEEEccCceEEEEecC-cccCeEEEEEc--CCCCEEEEEeCCC------------------cE
Q 038577          316 -ELGNWLVFGCAKLGQLLVWEWRSESYILKQQG-HYFDVNCLAYS--PDSQLLATGADDN------------------KV  373 (860)
Q Consensus       316 -~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~-~~~~v~~~~~s--~~~~~l~~~~~dg------------------~i  373 (860)
                       +||+++++....++.|.+.|+++.+....... ....+..+...  |+..+++.++.+.                  .+
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence             48999999998899999999999887554422 33445666664  4555777766532                  36


Q ss_pred             EEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCC---------------cEEEEEc------------------
Q 038577          374 KVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDG---------------TVRAWDL------------------  420 (860)
Q Consensus       374 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg---------------~i~~wd~------------------  420 (860)
                      .++|..+.+......- ......+.++++|+++++.+.+.               .+.+++.                  
T Consensus       176 t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV  254 (459)
T d1fwxa2         176 TAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  254 (459)
T ss_dssp             EEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCc
Confidence            7789888887776653 34567889999999998876432               1333433                  


Q ss_pred             -----ccc---ceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCc-----------eEEEecCcccCeE
Q 038577          421 -----FRY---RNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGR-----------LLDILSGHEGPVH  481 (860)
Q Consensus       421 -----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~-----------~~~~~~~h~~~v~  481 (860)
                           .+.   ...+.++.+  .....+.++|||+++++++.-..++.++|++.-.           .+..-....-...
T Consensus       255 ~VVD~~~~~~~~v~~yIPVp--KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPL  332 (459)
T d1fwxa2         255 KVVDGRKEASSLFTRYIPIA--NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPL  332 (459)
T ss_dssp             EEEECSGG--CSSEEEEEEE--SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEE
T ss_pred             eeecccccCCcceeEEEecC--CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcc
Confidence                 211   111122222  2345688999999999988877799999986321           1111111233445


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEccC
Q 038577          482 GLVFSPTNATLASSSWDKTVRLWNVFE  508 (860)
Q Consensus       482 ~l~~s~~~~~l~s~~~dg~i~iwd~~~  508 (860)
                      ..+|...|....|.--|.+|.-|++..
T Consensus       333 ht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         333 HTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             ccccCCCceEEEEeeccceEEEEecch
Confidence            678988886555666799999999853

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.21  E-value=0.00029  Score=74.43  Aligned_cols=280  Identities=15%  Similarity=0.078  Sum_probs=170.2

Q ss_pred             EEEEEEccCCcEEEEEcc-CceEEEEecCccc----C-------eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 038577          320 WLVFGCAKLGQLLVWEWR-SESYILKQQGHYF----D-------VNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTF  387 (860)
Q Consensus       320 ~l~~~~~~~g~i~v~d~~-~~~~~~~~~~~~~----~-------v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  387 (860)
                      .+.+++..++.+...|.. +|+.+.++.....    .       -+.+++.  +..++.++.||.+.-.|.++|+.....
T Consensus        64 ~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w~~  141 (571)
T d2ad6a1          64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINWEV  141 (571)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhccc
Confidence            333433333778888864 6888877632100    0       0123443  346778899999999999999987765


Q ss_pred             ecCC----CceEEEEEeeCCCEEEEEe------CCCcEEEEEccccceeeEeeCCCC-----------------------
Q 038577          388 TEHT----NAVTALHFMANNHSLLSAS------LDGTVRAWDLFRYRNFRTFTTPSS-----------------------  434 (860)
Q Consensus       388 ~~~~----~~v~~i~~~~~~~~l~s~~------~dg~i~~wd~~~~~~~~~~~~~~~-----------------------  434 (860)
                      ....    ..++..-.-.++ .++.+.      .+|.|+.+|+.+++.+..+.....                       
T Consensus       142 ~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (571)
T d2ad6a1         142 EVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLG  220 (571)
T ss_dssp             ECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHH
T ss_pred             cccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCccccc
Confidence            4211    111111111233 444444      367899999999998876653211                       


Q ss_pred             --------------CcEEEEEECCCCCEEEEEecC---------------CCeEEEEECCCCceEEEecCcccCe-----
Q 038577          435 --------------RQFVSLASDQSGEVICAGTLD---------------SFEIFVWSMKTGRLLDILSGHEGPV-----  480 (860)
Q Consensus       435 --------------~~~~~~~~~~~~~~l~~~~~~---------------~~~i~v~d~~~~~~~~~~~~h~~~v-----  480 (860)
                                    ......++++....+..+..+               ...+.-.|.++|+.+..++.+...+     
T Consensus       221 ~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~  300 (571)
T d2ad6a1         221 TKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAG  300 (571)
T ss_dssp             HHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCC
T ss_pred             ccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCcccccccc
Confidence                          011335677777777766552               1268889999999987776432211     


Q ss_pred             ----EEEEEcCCCC---EEEEEeCCCcEEEEEccCCcceeEEccc-----------------------------------
Q 038577          481 ----HGLVFSPTNA---TLASSSWDKTVRLWNVFEGKGSVESFPH-----------------------------------  518 (860)
Q Consensus       481 ----~~l~~s~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------------------------------  518 (860)
                          .......+++   .++.++.+|.+++.|..+++.+......                                   
T Consensus       301 ~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p  380 (571)
T d2ad6a1         301 VNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICP  380 (571)
T ss_dssp             CCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESS
T ss_pred             ccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEe
Confidence                1122222443   4677888999999999888754321100                                   


Q ss_pred             --CCC--eEEEEEeeCCCEEEEEeCC-------------------------------------CeEEEEeCCCCceeEEE
Q 038577          519 --THD--VLTVVYRPDGRQLACSTLD-------------------------------------GQIHFWDPLNGELMYTI  557 (860)
Q Consensus       519 --~~~--v~~~~~s~~~~~l~~~~~d-------------------------------------g~i~iwd~~~~~~~~~~  557 (860)
                        .+.  -...+++|+..++++...+                                     |.|.-+|+.+|+.+.+.
T Consensus       381 ~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~  460 (571)
T d2ad6a1         381 SAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTK  460 (571)
T ss_dssp             CTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEE
T ss_pred             ccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeeccccCCcccCCcccEEEeccCCCceeeEc
Confidence              000  0125677777776654433                                     45777777777777665


Q ss_pred             ecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeecc
Q 038577          558 EGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITH  623 (860)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~  623 (860)
                      ......                     .+-..+-.+.++++++.||.++.+|.++|+.+-++....
T Consensus       461 ~~~~~~---------------------~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~  505 (571)
T d2ad6a1         461 WEKFAA---------------------WGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS  505 (571)
T ss_dssp             EESSCC---------------------CSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             CCCCCC---------------------CcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCC
Confidence            543221                     111123346688889999999999999999999887654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.20  E-value=0.00063  Score=71.67  Aligned_cols=282  Identities=13%  Similarity=0.120  Sum_probs=166.5

Q ss_pred             CCEEEEEEcCCeEEEEECCCceeEEEEeecCce----------e-EEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEE
Q 038577          276 LDMVVVGFSNGVFGLYQMPDFVCIHLLSISREK----------I-TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILK  344 (860)
Q Consensus       276 ~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~----------i-~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~  344 (860)
                      +..+++++.++.|.-.|..+++.+-.+......          + ..++.  .+..++++..+ +.+.-.|..+++.+..
T Consensus        66 ~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~-g~l~Alda~tG~~~w~  142 (560)
T d1kv9a2          66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLD-GRLIALDAKTGKAIWS  142 (560)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTT-SEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCC-CEEEEEECCCCcEEec
Confidence            346778889999999999999999876432110          0 11111  23455555544 8999999999998887


Q ss_pred             ecCccc-CeEEEEEcC--CCCEEEEEeC------CCcEEEEECCCCeeEEEeecC-------------------------
Q 038577          345 QQGHYF-DVNCLAYSP--DSQLLATGAD------DNKVKVWTVSSGFCFVTFTEH-------------------------  390 (860)
Q Consensus       345 ~~~~~~-~v~~~~~s~--~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~-------------------------  390 (860)
                      ...... .-..+.-.|  .+..++++..      .|.|.-+|.++|+.+-.+..-                         
T Consensus       143 ~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (560)
T d1kv9a2         143 QQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY  222 (560)
T ss_dssp             EECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred             cCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCcccccccccccccccccc
Confidence            643211 111111111  1223444432      367999999999998877421                         


Q ss_pred             -----CCceE-EEEEeeCCCEEEEEeC-------------------CCcEEEEEccccceeeEeeCCCC--------CcE
Q 038577          391 -----TNAVT-ALHFMANNHSLLSASL-------------------DGTVRAWDLFRYRNFRTFTTPSS--------RQF  437 (860)
Q Consensus       391 -----~~~v~-~i~~~~~~~~l~s~~~-------------------dg~i~~wd~~~~~~~~~~~~~~~--------~~~  437 (860)
                           ...++ .+++.+....++.+..                   ...|...|+.+++....+.....        ...
T Consensus       223 ~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~  302 (560)
T d1kv9a2         223 WKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQI  302 (560)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred             ccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEecccccccccccccee
Confidence                 11111 2445555555543221                   23567778888887766553321        111


Q ss_pred             EEEEECCCCC---EEEEEecCCCeEEEEECCCCceEEEecCcc-c-----------------------------------
Q 038577          438 VSLASDQSGE---VICAGTLDSFEIFVWSMKTGRLLDILSGHE-G-----------------------------------  478 (860)
Q Consensus       438 ~~~~~~~~~~---~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~-~-----------------------------------  478 (860)
                      .-+.+..+++   .++.+..++ .++++|..+|+++...+.-. .                                   
T Consensus       303 ~l~~~~~~g~~~~~v~~~~k~G-~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~  381 (560)
T d1kv9a2         303 TLAELNIDGKPRKVLMQAPKNG-FFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH  381 (560)
T ss_dssp             EEEEEEETTEEEEEEEECCTTS-EEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS
T ss_pred             eeeeeecCCceeeeeeecCccc-eEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeecccccc
Confidence            2222222332   444555555 99999999999875442110 0                                   


Q ss_pred             CeEEEEEcCCCCEEEEEeCC------------------------------------CcEEEEEccCCcceeEEcccCCCe
Q 038577          479 PVHGLVFSPTNATLASSSWD------------------------------------KTVRLWNVFEGKGSVESFPHTHDV  522 (860)
Q Consensus       479 ~v~~l~~s~~~~~l~s~~~d------------------------------------g~i~iwd~~~~~~~~~~~~~~~~v  522 (860)
                      .-...+++|+...++....+                                    |.+.-||+.+++...+.. ...+.
T Consensus       382 ~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~-~~~~~  460 (560)
T d1kv9a2         382 NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP-YPTHW  460 (560)
T ss_dssp             CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE-ESSSC
T ss_pred             ccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeecc-CCCCC
Confidence            00134667776666544321                                    457778888887554433 22222


Q ss_pred             EEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccc
Q 038577          523 LTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRD  562 (860)
Q Consensus       523 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  562 (860)
                      .+-.++-.+.++++++.||.++.+|..+|+.+.+++....
T Consensus       461 ~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~  500 (560)
T d1kv9a2         461 NGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSG  500 (560)
T ss_dssp             CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             CCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCC
Confidence            2223444677888999999999999999999999887654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.16  E-value=0.0021  Score=67.67  Aligned_cols=279  Identities=13%  Similarity=0.096  Sum_probs=154.8

Q ss_pred             CCEEEEEEcCCeEEEEECCCceeEEEEeecCc----eeEEEEEeeCCCEEEEEEc-----cCCcEEEEEccCceEEEEec
Q 038577          276 LDMVVVGFSNGVFGLYQMPDFVCIHLLSISRE----KITTAVFNELGNWLVFGCA-----KLGQLLVWEWRSESYILKQQ  346 (860)
Q Consensus       276 ~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~----~i~~~~~s~~~~~l~~~~~-----~~g~i~v~d~~~~~~~~~~~  346 (860)
                      +..++.++.+|.+.-.|..+++..........    .++..-.-.++ .++++..     ..|.|+-+|..+++.+.+..
T Consensus       115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  193 (571)
T d2ad6a1         115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence            45788899999999999999998876654321    12222222233 3334332     14789999999999998763


Q ss_pred             Ccc-------------------------------------cCe-EEEEEcCCCCEEEEEeC----------------CCc
Q 038577          347 GHY-------------------------------------FDV-NCLAYSPDSQLLATGAD----------------DNK  372 (860)
Q Consensus       347 ~~~-------------------------------------~~v-~~~~~s~~~~~l~~~~~----------------dg~  372 (860)
                      ...                                     ..+ ...++.+....+..+..                ...
T Consensus       194 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~s  273 (571)
T d2ad6a1         194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT  273 (571)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred             ccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccc
Confidence            221                                     011 23456666666665544                246


Q ss_pred             EEEEECCCCeeEEEeecCCCce---------EEEEEeeCCC---EEEEEeCCCcEEEEEccccceeeEeeCCCCCcE---
Q 038577          373 VKVWTVSSGFCFVTFTEHTNAV---------TALHFMANNH---SLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQF---  437 (860)
Q Consensus       373 i~iwd~~~~~~~~~~~~~~~~v---------~~i~~~~~~~---~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~---  437 (860)
                      +.-.|.++|+.+..++.+...+         ....+..+++   .++.++.+|.+.++|..+++.+...........   
T Consensus       274 vvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~  353 (571)
T d2ad6a1         274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKK  353 (571)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred             eeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccccc
Confidence            7788999999988776533222         2222333443   467888999999999999887654332211000   


Q ss_pred             -----------------------------------EEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEE
Q 038577          438 -----------------------------------VSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHG  482 (860)
Q Consensus       438 -----------------------------------~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~  482 (860)
                                                         ...+++|+...+++...+. .. .|.......   ..+.......
T Consensus       354 ~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~-~~-~~~~~~~~~---~~~~~~~~~~  428 (571)
T d2ad6a1         354 VDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHI-CM-DWEPFMLPY---RAGQFFVGAT  428 (571)
T ss_dssp             ECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECE-EE-EEEECCCCC---CTTSCCCCEE
T ss_pred             ccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEecccc-cc-ccccccccc---cCCccccccc
Confidence                                               1134444444444444332 11 111100000   0000000011


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccc
Q 038577          483 LVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRD  562 (860)
Q Consensus       483 l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  562 (860)
                      +...+... .......|.+.-+|+.+++...+... ..+..+-.++-.+.++++++.||.++.+|.++|+.+.+++....
T Consensus       429 ~~~~~~~~-~~~~~~~G~l~AiD~~TG~~~W~~~~-~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~  506 (571)
T d2ad6a1         429 LAMYPGPN-GPTKKEMGQIRAFDLTTGKAKWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSG  506 (571)
T ss_dssp             EEEEECTT-STTSCCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             eeeccccC-CcccCCcccEEEeccCCCceeeEcCC-CCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCC
Confidence            11111100 00011235788888888885544432 11111112333567888999999999999999999999877654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=98.16  E-value=0.0011  Score=70.21  Aligned_cols=281  Identities=11%  Similarity=0.094  Sum_probs=159.6

Q ss_pred             CCEEEEEEcCCeEEEEECCCceeEEEEeecCc----------ee-EEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEE
Q 038577          276 LDMVVVGFSNGVFGLYQMPDFVCIHLLSISRE----------KI-TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILK  344 (860)
Q Consensus       276 ~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~----------~i-~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~  344 (860)
                      +..+++++.++.|.-+|..+++.+-.+.....          .+ ..+.+.  +..++++.. ++.+.-.|..+++.+..
T Consensus        77 ~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~-~g~l~alda~tG~~~W~  153 (573)
T d1kb0a2          77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAW-DGRLIALDAATGKEVWH  153 (573)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECT-TSEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEec-ccceeeeccccccceec
Confidence            34677888899999999999999887643211          01 112222  234444444 48898899999988876


Q ss_pred             ecCc--c-cCeEEEEEcC--CCCEEEEEeC------CCcEEEEECCCCeeEEEeecCC----------------------
Q 038577          345 QQGH--Y-FDVNCLAYSP--DSQLLATGAD------DNKVKVWTVSSGFCFVTFTEHT----------------------  391 (860)
Q Consensus       345 ~~~~--~-~~v~~~~~s~--~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~----------------------  391 (860)
                      ....  . ..+. +.-.|  -+..+++++.      .|.|+-+|..+|+.+-.+....                      
T Consensus       154 ~~~~~~~~~~~~-~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~  232 (573)
T d1kb0a2         154 QNTFEGQKGSLT-ITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS  232 (573)
T ss_dssp             EETTTTCCSSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred             ccCccCCcceEE-eecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCC
Confidence            5421  1 1111 11111  1234555433      4679999999999988763211                      


Q ss_pred             ---------CceE-EEEEeeCCCEEEEEeC-------------------CCcEEEEEccccceeeEeeCCC--------C
Q 038577          392 ---------NAVT-ALHFMANNHSLLSASL-------------------DGTVRAWDLFRYRNFRTFTTPS--------S  434 (860)
Q Consensus       392 ---------~~v~-~i~~~~~~~~l~s~~~-------------------dg~i~~wd~~~~~~~~~~~~~~--------~  434 (860)
                               ..++ ..++.++...++....                   ...+...|..+++....++...        .
T Consensus       233 ~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~  312 (573)
T d1kb0a2         233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST  312 (573)
T ss_dssp             GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred             CceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCccccccccc
Confidence                     1111 2344454444443221                   1235566667776655544321        1


Q ss_pred             CcEEEEEECCCC---CEEEEEecCCCeEEEEECCCCceEEEecCccc---------------------------------
Q 038577          435 RQFVSLASDQSG---EVICAGTLDSFEIFVWSMKTGRLLDILSGHEG---------------------------------  478 (860)
Q Consensus       435 ~~~~~~~~~~~~---~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~---------------------------------  478 (860)
                      ..........++   ..++.+..++ .++++|..+|+.+........                                 
T Consensus       313 ~~~~l~~~~~~g~~~~~v~~~~k~G-~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~G  391 (573)
T d1kb0a2         313 QPMILADIKIAGKPRKVILHAPKNG-FFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYG  391 (573)
T ss_dssp             SCCEEEEEEETTEEEEEEEECCTTS-EEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTC
T ss_pred             ceeeecceecCCCceeeeeeccccc-eeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccC
Confidence            111222222233   2344455555 999999999998765431100                                 


Q ss_pred             --CeEEEEEcCCCCEEEEEeCC-------------------------------------------CcEEEEEccCCccee
Q 038577          479 --PVHGLVFSPTNATLASSSWD-------------------------------------------KTVRLWNVFEGKGSV  513 (860)
Q Consensus       479 --~v~~l~~s~~~~~l~s~~~d-------------------------------------------g~i~iwd~~~~~~~~  513 (860)
                        .-...+++|+...++....+                                           |.+.-||+.+++...
T Consensus       392 g~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W  471 (573)
T d1kb0a2         392 AHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAW  471 (573)
T ss_dssp             SSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEE
T ss_pred             CccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCCceEe
Confidence              01124677776666553332                                           245566666666444


Q ss_pred             EEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccc
Q 038577          514 ESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRD  562 (860)
Q Consensus       514 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  562 (860)
                      .... ..+...-..+-.|.++++|+.||.++.||.++|+.+.+++....
T Consensus       472 ~~~~-~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~  519 (573)
T d1kb0a2         472 SVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG  519 (573)
T ss_dssp             EEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             eecC-CCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCC
Confidence            3322 11211222344788899999999999999999999999987654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.15  E-value=0.00022  Score=75.25  Aligned_cols=279  Identities=14%  Similarity=0.130  Sum_probs=174.1

Q ss_pred             EEEEEEccCCcEEEEEccCceEEEEecCccc----------C-eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEee
Q 038577          320 WLVFGCAKLGQLLVWEWRSESYILKQQGHYF----------D-VNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFT  388 (860)
Q Consensus       320 ~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~----------~-v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  388 (860)
                      .+.+++.. +.|.-.|.++|+.+.++.....          . -..++.  .+..++.+..++.+.-.|..+|+.+....
T Consensus        68 ~vyv~t~~-~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~~  144 (560)
T d1kv9a2          68 VIYTSMSW-SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQ  144 (560)
T ss_dssp             EEEEEEGG-GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEECCC-CeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEeccC
Confidence            44444444 8888899999999887632110          0 011111  14468888999999999999999988775


Q ss_pred             cCCCc----eEEEEEeeCCCEEEEEe------CCCcEEEEEccccceeeEeeCCCC------------------------
Q 038577          389 EHTNA----VTALHFMANNHSLLSAS------LDGTVRAWDLFRYRNFRTFTTPSS------------------------  434 (860)
Q Consensus       389 ~~~~~----v~~i~~~~~~~~l~s~~------~dg~i~~wd~~~~~~~~~~~~~~~------------------------  434 (860)
                      .+...    ++..-.--++ .++.+.      ..|.|..+|..+++.+..+.....                        
T Consensus       145 ~~~~~~~~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (560)
T d1kv9a2         145 TTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW  223 (560)
T ss_dssp             CSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred             ccCcccceeeeeeeeeecC-cccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccc
Confidence            32211    1110011123 334332      236799999999998887764211                        


Q ss_pred             ------CcEEEEEECCCCCEEEEEecC------------------CCeEEEEECCCCceEEEecCcccCeE---------
Q 038577          435 ------RQFVSLASDQSGEVICAGTLD------------------SFEIFVWSMKTGRLLDILSGHEGPVH---------  481 (860)
Q Consensus       435 ------~~~~~~~~~~~~~~l~~~~~~------------------~~~i~v~d~~~~~~~~~~~~h~~~v~---------  481 (860)
                            ..-..+++++...+++.+..+                  ...|.-.|+++++....++.....+.         
T Consensus       224 ~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~  303 (560)
T d1kv9a2         224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT  303 (560)
T ss_dssp             HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred             cccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceee
Confidence                  012235777888877765432                  12688889999998876654322221         


Q ss_pred             EEEEcCCC---CEEEEEeCCCcEEEEEccCCcceeEEcccC------------------------------------CCe
Q 038577          482 GLVFSPTN---ATLASSSWDKTVRLWNVFEGKGSVESFPHT------------------------------------HDV  522 (860)
Q Consensus       482 ~l~~s~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------------------------------~~v  522 (860)
                      -..+..++   +.++.++.+|.+.++|..+++.+.......                                    ..-
T Consensus       304 l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w  383 (560)
T d1kv9a2         304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNW  383 (560)
T ss_dssp             EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCS
T ss_pred             eeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeecccccccc
Confidence            12222244   356778889999999999888553321100                                    000


Q ss_pred             EEEEEeeCCCEEEEEeC------------------------------------CCeEEEEeCCCCceeEEEecccccCCC
Q 038577          523 LTVVYRPDGRQLACSTL------------------------------------DGQIHFWDPLNGELMYTIEGRRDISGG  566 (860)
Q Consensus       523 ~~~~~s~~~~~l~~~~~------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~  566 (860)
                      ...+++|+..++++...                                    .|.+.-||+.+|+.+...+.....   
T Consensus       384 ~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~---  460 (560)
T d1kv9a2         384 HSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHW---  460 (560)
T ss_dssp             SCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSC---
T ss_pred             ccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCCCC---
Confidence            13567777777665442                                    256788888888888876654321   


Q ss_pred             ccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeecc
Q 038577          567 RLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITH  623 (860)
Q Consensus       567 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~  623 (860)
                                        .+-.++-.|.++++|+.||.++.+|.++|+.+-++....
T Consensus       461 ------------------~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~  499 (560)
T d1kv9a2         461 ------------------NGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQS  499 (560)
T ss_dssp             ------------------CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             ------------------CCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCC
Confidence                              111234457788899999999999999999999887643

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.09  E-value=0.0018  Score=68.39  Aligned_cols=282  Identities=10%  Similarity=0.060  Sum_probs=163.0

Q ss_pred             EEEE-EEcCCeEEEEEC-CCceeEEEEeecCc-----------eeEEEEEeeCC----CEEEEEEccCCcEEEEEccCce
Q 038577          278 MVVV-GFSNGVFGLYQM-PDFVCIHLLSISRE-----------KITTAVFNELG----NWLVFGCAKLGQLLVWEWRSES  340 (860)
Q Consensus       278 ~l~~-~~~~g~i~~~~~-~~~~~~~~~~~~~~-----------~i~~~~~s~~~----~~l~~~~~~~g~i~v~d~~~~~  340 (860)
                      .|++ ++..+.+...|. .+++.+-.+.....           .-+.+++.++.    ..++++.. ++.|.-.|.++++
T Consensus        64 ~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~-dg~l~Alda~tG~  142 (596)
T d1w6sa_          64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL-DGNVAALNAETGE  142 (596)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-TSEEEEEETTTCC
T ss_pred             EEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeC-CCCeEeeccccCc
Confidence            3443 334567777776 46887766543221           01334554332    34555544 5999999999999


Q ss_pred             EEEEecCcccCe-EEEEEcC--CCCEEEEEeC------CCcEEEEECCCCeeEEEeecCC--------------------
Q 038577          341 YILKQQGHYFDV-NCLAYSP--DSQLLATGAD------DNKVKVWTVSSGFCFVTFTEHT--------------------  391 (860)
Q Consensus       341 ~~~~~~~~~~~v-~~~~~s~--~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~--------------------  391 (860)
                      .+..+....... ..+.-+|  -+..++++..      .|.|+-+|..+|+.+-.+....                    
T Consensus       143 ~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~  222 (596)
T d1w6sa_         143 TVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQ  222 (596)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred             eeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccccccc
Confidence            988774211100 0111111  1335555543      4889999999999988764211                    


Q ss_pred             -----------------Cce-EEEEEeeCCCEEEEEeC----------------CCcEEEEEccccceeeEeeCCCC---
Q 038577          392 -----------------NAV-TALHFMANNHSLLSASL----------------DGTVRAWDLFRYRNFRTFTTPSS---  434 (860)
Q Consensus       392 -----------------~~v-~~i~~~~~~~~l~s~~~----------------dg~i~~wd~~~~~~~~~~~~~~~---  434 (860)
                                       ..+ ..+++.+....+..+..                ...+...|+.+++....++..+.   
T Consensus       223 ~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~W  302 (596)
T d1w6sa_         223 KGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEW  302 (596)
T ss_dssp             TTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSS
T ss_pred             cccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceecccc
Confidence                             111 23455565555555432                23477889999988877664321   


Q ss_pred             -----CcEEEEE-ECCCCC---EEEEEecCCCeEEEEECCCCceEEEecCcc-------------cC-------------
Q 038577          435 -----RQFVSLA-SDQSGE---VICAGTLDSFEIFVWSMKTGRLLDILSGHE-------------GP-------------  479 (860)
Q Consensus       435 -----~~~~~~~-~~~~~~---~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~-------------~~-------------  479 (860)
                           .....+. ...+|+   .++....++ .++++|..+|+++...+...             .+             
T Consensus       303 d~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G-~~~vlDr~tG~~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~  381 (596)
T d1w6sa_         303 DYAGVNVMMLSEQKDKDGKARKLLTHPDRNG-IVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHL  381 (596)
T ss_dssp             CCCCCCCCEEEEEECTTSCEEEEEEEECTTS-EEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCC
T ss_pred             CCccccceeeeeccccccccccceecccccc-ceeeecCCCCceeeeccccccccccccccccccccccCccccccCCcc
Confidence                 1112222 234443   455566666 99999999998875432100             00             


Q ss_pred             -------------eEEEEEcCCCCEEEEEeC---------------------------------------CCcEEEEEcc
Q 038577          480 -------------VHGLVFSPTNATLASSSW---------------------------------------DKTVRLWNVF  507 (860)
Q Consensus       480 -------------v~~l~~s~~~~~l~s~~~---------------------------------------dg~i~iwd~~  507 (860)
                                   -...+++|+..++.....                                       -|.+.-||+.
T Consensus       382 ~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~  461 (596)
T d1w6sa_         382 AKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAI  461 (596)
T ss_dssp             EEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTT
T ss_pred             ceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccccccccccCcccCcccCCCcceEEEEeCC
Confidence                         012355665555443321                                       1457777777


Q ss_pred             CCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccc
Q 038577          508 EGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRD  562 (860)
Q Consensus       508 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  562 (860)
                      +++...+.. +..+..+-.++..|.+++.|+.||.++.+|.++|+.+.+++....
T Consensus       462 TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~  515 (596)
T d1w6sa_         462 TGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSG  515 (596)
T ss_dssp             TCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             CCceecccC-CCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCC
Confidence            777544332 222222223345678888999999999999999999999987654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.06  E-value=0.0018  Score=68.51  Aligned_cols=273  Identities=15%  Similarity=0.138  Sum_probs=166.7

Q ss_pred             CcEEEEEc-cCceEEEEecCcc----c-------CeEEEEEcCC----CCEEEEEeCCCcEEEEECCCCeeEEEeecCC-
Q 038577          329 GQLLVWEW-RSESYILKQQGHY----F-------DVNCLAYSPD----SQLLATGADDNKVKVWTVSSGFCFVTFTEHT-  391 (860)
Q Consensus       329 g~i~v~d~-~~~~~~~~~~~~~----~-------~v~~~~~s~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-  391 (860)
                      +.+...|. ++|+.+.++....    .       .-+.+++.++    +.+++.++.|+.+.-.|..+|+.+..+.... 
T Consensus        73 ~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~  152 (596)
T d1w6sa_          73 NNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDI  152 (596)
T ss_dssp             TCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCG
T ss_pred             CcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCceecccccccc
Confidence            66666775 4677777653111    0       1133455433    3478889999999999999999988774321 


Q ss_pred             ---CceEEEEEeeCCCEEEEEeC------CCcEEEEEccccceeeEeeCCC-----------------------------
Q 038577          392 ---NAVTALHFMANNHSLLSASL------DGTVRAWDLFRYRNFRTFTTPS-----------------------------  433 (860)
Q Consensus       392 ---~~v~~i~~~~~~~~l~s~~~------dg~i~~wd~~~~~~~~~~~~~~-----------------------------  433 (860)
                         ..++.--.--++ .++.+..      .|.|+-+|+.+++.+..+....                             
T Consensus       153 ~~~~~~t~~P~v~~~-~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~  231 (596)
T d1w6sa_         153 KVGSTLTIAPYVVKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWE  231 (596)
T ss_dssp             GGTCBCCSCCEEETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSS
T ss_pred             ccccccccCCcEECC-eEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCC
Confidence               111111111123 4555432      4889999999999987765321                             


Q ss_pred             --------CCcEEEEEECCCCCEEEEEecCC---------------CeEEEEECCCCceEEEecCccc---------CeE
Q 038577          434 --------SRQFVSLASDQSGEVICAGTLDS---------------FEIFVWSMKTGRLLDILSGHEG---------PVH  481 (860)
Q Consensus       434 --------~~~~~~~~~~~~~~~l~~~~~~~---------------~~i~v~d~~~~~~~~~~~~h~~---------~v~  481 (860)
                              ......+++++....+..+..+.               ..+.-.|+++|+.+..++....         ...
T Consensus       232 g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~  311 (596)
T d1w6sa_         232 GDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMM  311 (596)
T ss_dssp             TTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE
T ss_pred             CCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccccCCcccccee
Confidence                    01123456778788777765432               2588899999999876653211         111


Q ss_pred             EEE-EcCCC---CEEEEEeCCCcEEEEEccCCcceeEEccc--C-----------C------------------------
Q 038577          482 GLV-FSPTN---ATLASSSWDKTVRLWNVFEGKGSVESFPH--T-----------H------------------------  520 (860)
Q Consensus       482 ~l~-~s~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~-----------~------------------------  520 (860)
                      -+. ...+|   +.++....+|.+.++|..+++.+......  .           .                        
T Consensus       312 l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~G  391 (596)
T d1w6sa_         312 LSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMG  391 (596)
T ss_dssp             EEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTC
T ss_pred             eeeccccccccccceeccccccceeeecCCCCceeeeccccccccccccccccccccccCccccccCCccceeEeccccc
Confidence            111 12344   35778888999999999888755322100  0           0                        


Q ss_pred             --CeEEEEEeeCCCEEEEEeCC---------------------------------------CeEEEEeCCCCceeEEEec
Q 038577          521 --DVLTVVYRPDGRQLACSTLD---------------------------------------GQIHFWDPLNGELMYTIEG  559 (860)
Q Consensus       521 --~v~~~~~s~~~~~l~~~~~d---------------------------------------g~i~iwd~~~~~~~~~~~~  559 (860)
                        .-...+++|+..+++....+                                       |.|.-||+.+|+.+.....
T Consensus       392 g~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~  471 (596)
T d1w6sa_         392 YHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME  471 (596)
T ss_dssp             SSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE
T ss_pred             ccccCccccCCCCceEEecccccccccccccccccccccccccccccccCcccCcccCCCcceEEEEeCCCCceecccCC
Confidence              00124566666665554321                                       4566777777777665543


Q ss_pred             ccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeecc
Q 038577          560 RRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITH  623 (860)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~  623 (860)
                      ...                     ..+-.++-.|.+++.|+.||.++.+|.++|+.+-++....
T Consensus       472 ~~~---------------------~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~  514 (596)
T d1w6sa_         472 RFA---------------------VWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS  514 (596)
T ss_dssp             SSC---------------------CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             CCC---------------------CccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCC
Confidence            322                     1111233467788889999999999999999999888654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=98.04  E-value=0.0005  Score=72.80  Aligned_cols=279  Identities=13%  Similarity=0.103  Sum_probs=168.4

Q ss_pred             EEEEEEccCCcEEEEEccCceEEEEecCccc----------Ce-EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEee
Q 038577          320 WLVFGCAKLGQLLVWEWRSESYILKQQGHYF----------DV-NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFT  388 (860)
Q Consensus       320 ~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~----------~v-~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  388 (860)
                      .+++++.+ +.|.-+|.++|+.+.++.....          .+ ..+.+.  +..++.++.|+.+.-.|..+|+.+....
T Consensus        79 ~vyv~t~~-~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~  155 (573)
T d1kb0a2          79 IMYVSASW-SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQN  155 (573)
T ss_dssp             EEEEECGG-GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEECCC-CeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceeccc
Confidence            34444444 8899999999999887642110          01 122232  3367778889999999999999886654


Q ss_pred             cCCC---ce--EEEEEeeCCCEEEEEeC------CCcEEEEEccccceeeEeeCCCCC----------------------
Q 038577          389 EHTN---AV--TALHFMANNHSLLSASL------DGTVRAWDLFRYRNFRTFTTPSSR----------------------  435 (860)
Q Consensus       389 ~~~~---~v--~~i~~~~~~~~l~s~~~------dg~i~~wd~~~~~~~~~~~~~~~~----------------------  435 (860)
                      ....   .+  +..-...++ .+++++.      .|.|+.+|..+++.+..+......                      
T Consensus       156 ~~~~~~~~~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~  234 (573)
T d1kb0a2         156 TFEGQKGSLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK  234 (573)
T ss_dssp             TTTTCCSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred             CccCCcceEEeecceEEEec-cEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCc
Confidence            3211   11  110011123 4444432      467999999999988776532100                      


Q ss_pred             ---------cEEEEEECCCCCEEEEEecC------------------CCeEEEEECCCCceEEEecCccc---------C
Q 038577          436 ---------QFVSLASDQSGEVICAGTLD------------------SFEIFVWSMKTGRLLDILSGHEG---------P  479 (860)
Q Consensus       436 ---------~~~~~~~~~~~~~l~~~~~~------------------~~~i~v~d~~~~~~~~~~~~h~~---------~  479 (860)
                               .-...++++....+..+...                  ...|.-.|.++++....++....         +
T Consensus       235 ~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~  314 (573)
T d1kb0a2         235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP  314 (573)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred             eeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccce
Confidence                     01235677777777654322                  12577888899988766653221         1


Q ss_pred             eEEEEEcCCC---CEEEEEeCCCcEEEEEccCCcceeEEcccC-----------------------------------CC
Q 038577          480 VHGLVFSPTN---ATLASSSWDKTVRLWNVFEGKGSVESFPHT-----------------------------------HD  521 (860)
Q Consensus       480 v~~l~~s~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----------------------------------~~  521 (860)
                      ........++   ..++.++.+|.+.++|..+++.+.......                                   ..
T Consensus       315 ~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~  394 (573)
T d1kb0a2         315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHN  394 (573)
T ss_dssp             CEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSC
T ss_pred             eeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCcc
Confidence            1222222233   357778889999999999888554322100                                   00


Q ss_pred             eEEEEEeeCCCEEEEEeCC-------------------------------------------CeEEEEeCCCCceeEEEe
Q 038577          522 VLTVVYRPDGRQLACSTLD-------------------------------------------GQIHFWDPLNGELMYTIE  558 (860)
Q Consensus       522 v~~~~~s~~~~~l~~~~~d-------------------------------------------g~i~iwd~~~~~~~~~~~  558 (860)
                      -..++++|+..++++...+                                           |.+.-||+.+|+.+...+
T Consensus       395 w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~  474 (573)
T d1kb0a2         395 WHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE  474 (573)
T ss_dssp             SSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE
T ss_pred             ccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCCceEeeec
Confidence            1124677877777664333                                           346666677776666655


Q ss_pred             cccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeecc
Q 038577          559 GRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITH  623 (860)
Q Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~  623 (860)
                      .....                     ..-..+-.|.++++|+.||.++.+|.++|+.+-++....
T Consensus       475 ~~~p~---------------------~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~  518 (573)
T d1kb0a2         475 HVSPW---------------------NGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT  518 (573)
T ss_dssp             ESSSC---------------------CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             CCCCC---------------------CCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCC
Confidence            43321                     111234468889999999999999999999999887643

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=0.0068  Score=56.40  Aligned_cols=234  Identities=9%  Similarity=-0.065  Sum_probs=146.2

Q ss_pred             EEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce----EEEEecCcccCeEE
Q 038577          279 VVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES----YILKQQGHYFDVNC  354 (860)
Q Consensus       279 l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~----~~~~~~~~~~~v~~  354 (860)
                      |+.+.. ..|+.+++.+.+....+ .....+..+.|.+..+.+..+....+.|...++....    ...........+..
T Consensus         4 Ll~s~~-~~I~~~~l~~~~~~~~~-~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~g   81 (266)
T d1ijqa1           4 LFFTNR-HEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG   81 (266)
T ss_dssp             EEEECB-SSEEEEETTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             EEEECC-CeEEEEECCCCcceeee-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcce
Confidence            333333 34777888655443333 3445677899999999888887666777776664321    11222233345778


Q ss_pred             EEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEe--CCCcEEEEEccccceeeEeeC
Q 038577          355 LAYSPDSQLLATG-ADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSAS--LDGTVRAWDLFRYRNFRTFTT  431 (860)
Q Consensus       355 ~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~  431 (860)
                      +++.+.+..|..+ ...+.|.+.++...............+.++++.|...++.-..  ..+.|...++... ....+..
T Consensus        82 lAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs-~~~~l~~  160 (266)
T d1ijqa1          82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVT  160 (266)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEEC
T ss_pred             EEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCC-ceecccc
Confidence            8998766656555 4567899999887666555666667789999998665655443  3345666665433 3334433


Q ss_pred             CCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC--cccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 038577          432 PSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG--HEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEG  509 (860)
Q Consensus       432 ~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~  509 (860)
                      ..-.....+++++.++.|+.+....+.|...++...........  ......++++. ++....+-..++.|...+..++
T Consensus       161 ~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g  239 (266)
T d1ijqa1         161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  239 (266)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred             cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCC
Confidence            44456789999999988888877666999999976544333322  22345677776 3333444445677877777776


Q ss_pred             cceeEEc
Q 038577          510 KGSVESF  516 (860)
Q Consensus       510 ~~~~~~~  516 (860)
                      .......
T Consensus       240 ~~~~~~~  246 (266)
T d1ijqa1         240 SDVNLLA  246 (266)
T ss_dssp             CCCEEEE
T ss_pred             cceEEEE
Confidence            5443333

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.98  E-value=0.0051  Score=64.92  Aligned_cols=326  Identities=13%  Similarity=0.110  Sum_probs=168.9

Q ss_pred             eEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCC--Cce-EEEEecCCCCEEEEEEc
Q 038577          208 RIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAP--SKV-TACDYHRGLDMVVVGFS  284 (860)
Q Consensus       208 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v-~~~~~~~~~~~l~~~~~  284 (860)
                      .|++++.++.|.-.|..++..                      .|............  ..+ ..+++  .+..++.++.
T Consensus        70 ~vy~~t~~~~v~AlDa~TG~~----------------------lW~~~~~~~~~~~~~~~~~~rg~a~--~~~~i~~~t~  125 (582)
T d1flga_          70 VIYVTASYSRLFALDAKTGKR----------------------LWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTL  125 (582)
T ss_dssp             EEEEEETTTEEEEEESSSCCE----------------------EEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEET
T ss_pred             EEEEeCCCCeEEEEeCCCCCe----------------------EEEEcCCCCCccccccccccCCceE--eCCceEEecC
Confidence            677888888888888887754                      67654321111100  000 11222  2457888999


Q ss_pred             CCeEEEEECCCceeEEEEeecCce----eE-E-EEEee--CCCEEEEEEc------cCCcEEEEEccCceEEEEecCccc
Q 038577          285 NGVFGLYQMPDFVCIHLLSISREK----IT-T-AVFNE--LGNWLVFGCA------KLGQLLVWEWRSESYILKQQGHYF  350 (860)
Q Consensus       285 ~g~i~~~~~~~~~~~~~~~~~~~~----i~-~-~~~s~--~~~~l~~~~~------~~g~i~v~d~~~~~~~~~~~~~~~  350 (860)
                      ++.+.-.|..+++.+.........    .. . ..+.+  .+..+++...      ..+.+.-+|.++++.+.++.....
T Consensus       126 ~~~l~alda~tG~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~  205 (582)
T d1flga_         126 DASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEG  205 (582)
T ss_dssp             TTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTT
T ss_pred             CCeEEEecccccceeeeecccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCC
Confidence            999999999999887654432110    00 0 11111  1233333321      126788899999988876532211


Q ss_pred             ----------------------------------------Ce-EEEEEcCCCCEEEEEeC--------------------
Q 038577          351 ----------------------------------------DV-NCLAYSPDSQLLATGAD--------------------  369 (860)
Q Consensus       351 ----------------------------------------~v-~~~~~s~~~~~l~~~~~--------------------  369 (860)
                                                              .+ ..+++.+...++..+..                    
T Consensus       206 ~~~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~  285 (582)
T d1flga_         206 HMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDY  285 (582)
T ss_dssp             CEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTC
T ss_pred             ccccccccccccccccccccCCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcc
Confidence                                                    11 23566666666665431                    


Q ss_pred             ----CCcEEEEECCCCeeEEEeecCCCceE---------EEEEe-eCC---CEEEEEeCCCcEEEEEccccceeeEeeCC
Q 038577          370 ----DNKVKVWTVSSGFCFVTFTEHTNAVT---------ALHFM-ANN---HSLLSASLDGTVRAWDLFRYRNFRTFTTP  432 (860)
Q Consensus       370 ----dg~i~iwd~~~~~~~~~~~~~~~~v~---------~i~~~-~~~---~~l~s~~~dg~i~~wd~~~~~~~~~~~~~  432 (860)
                          ...+.-.|..+++..-.++.....+.         -+.+. .++   ..++..+.++.+.++|..+++.+......
T Consensus       286 dn~ys~SvvAld~~tG~~~W~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~~i~~~~~~  365 (582)
T d1flga_         286 DSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFV  365 (582)
T ss_dssp             CCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred             cccccceeEEecccchhhhhcccccccccccccccccccccccccccccccceeEeecccccEEeecccCCccccccccc
Confidence                12466778888888777654222111         11221 122   25667788999999999998877655443


Q ss_pred             CCCcEEEEEECCC-CCEEEEEecCCCeEEEEE--CCCCceEEEecCcc--cCeEEEEEcCCCCEEEEE------------
Q 038577          433 SSRQFVSLASDQS-GEVICAGTLDSFEIFVWS--MKTGRLLDILSGHE--GPVHGLVFSPTNATLASS------------  495 (860)
Q Consensus       433 ~~~~~~~~~~~~~-~~~l~~~~~~~~~i~v~d--~~~~~~~~~~~~h~--~~v~~l~~s~~~~~l~s~------------  495 (860)
                      ..... ....... ++.+ ..  ++....+..  ....+......+..  ..-...+++|+...+...            
T Consensus       366 ~~~~~-~~~~d~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~~  441 (582)
T d1flga_         366 DNITW-ASHIDLKTGRPV-ER--EGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEE  441 (582)
T ss_dssp             SCCCS-EEEECTTTCCEE-EC--TTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECC
T ss_pred             Ccccc-ccccccccccce-ec--cccccccccccccccceEEECCCccCCcccccceecCCCCceeeecccccccccccc
Confidence            22111 1111110 0000 00  000000000  00000000000000  000112222222211111            


Q ss_pred             ---------------------eCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcee
Q 038577          496 ---------------------SWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELM  554 (860)
Q Consensus       496 ---------------------~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  554 (860)
                                           ...|.+.-+|+.+++...+...+ .++..-.++..|.++++|+.||.++.+|..+|+.+
T Consensus       442 ~~~~~g~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~L  520 (582)
T d1flga_         442 VSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             CCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccccccccccccCccccccccCCCCeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEe
Confidence                                 12367888888888765554422 23333234567888999999999999999999999


Q ss_pred             EEEecccc
Q 038577          555 YTIEGRRD  562 (860)
Q Consensus       555 ~~~~~~~~  562 (860)
                      .+++....
T Consensus       521 W~~~~~~~  528 (582)
T d1flga_         521 WKFQTGSG  528 (582)
T ss_dssp             EEEECSSC
T ss_pred             EEEECCCC
Confidence            99887654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.96  E-value=0.007  Score=63.82  Aligned_cols=320  Identities=11%  Similarity=0.082  Sum_probs=168.8

Q ss_pred             CCEEEEEEcCCeEEEEECCCceeEEEEeecCc--------ee-EEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEec
Q 038577          276 LDMVVVGFSNGVFGLYQMPDFVCIHLLSISRE--------KI-TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQ  346 (860)
Q Consensus       276 ~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~--------~i-~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~  346 (860)
                      +..+++++.++.|.-.|..+++.+-.+.....        .+ ..++.  .+..++++..+ +.+.-.|.++++.+....
T Consensus        68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~--~~~~i~~~t~~-~~l~alda~tG~~~W~~~  144 (582)
T d1flga_          68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLD-ASVVALNKNTGKVVWKKK  144 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETT-TEEEEEESSSCCEEEEEE
T ss_pred             CCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceE--eCCceEEecCC-CeEEEecccccceeeeec
Confidence            45678888999999999999999877643210        00 11222  23456666554 889999999998876542


Q ss_pred             C--cccC--e--EEEEEcC--CCCEEEEEe-------CCCcEEEEECCCCeeEEEeecCCC-------------------
Q 038577          347 G--HYFD--V--NCLAYSP--DSQLLATGA-------DDNKVKVWTVSSGFCFVTFTEHTN-------------------  392 (860)
Q Consensus       347 ~--~~~~--v--~~~~~s~--~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~-------------------  392 (860)
                      .  +...  .  .-..+.+  .+..++..+       ..+.|.-+|..+|+.+-.+.....                   
T Consensus       145 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~  224 (582)
T d1flga_         145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAP  224 (582)
T ss_dssp             CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCT
T ss_pred             ccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCccccccccccccccccccc
Confidence            1  1100  0  0011111  133333332       246788899999988776543211                   


Q ss_pred             ---------------------ce-EEEEEeeCCCEEEEEeC------------------------CCcEEEEEcccccee
Q 038577          393 ---------------------AV-TALHFMANNHSLLSASL------------------------DGTVRAWDLFRYRNF  426 (860)
Q Consensus       393 ---------------------~v-~~i~~~~~~~~l~s~~~------------------------dg~i~~wd~~~~~~~  426 (860)
                                           .+ ..+++.+....++.+..                        ...+...|..+++..
T Consensus       225 ~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~  304 (582)
T d1flga_         225 SWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVK  304 (582)
T ss_dssp             TSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEE
T ss_pred             cCCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhh
Confidence                                 11 12456666555554321                        124666777888777


Q ss_pred             eEeeCCCC----------CcEEEEEECCCCC---EEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEE
Q 038577          427 RTFTTPSS----------RQFVSLASDQSGE---VICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLA  493 (860)
Q Consensus       427 ~~~~~~~~----------~~~~~~~~~~~~~---~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~  493 (860)
                      ..++..+.          ..+..+.. .++.   .++....++ .++++|..+|+++.......................
T Consensus       305 W~~q~~~~D~wd~d~~~~p~l~d~~~-~~g~~~~~v~~~~k~g-~~~vldr~tG~~i~~~~~~~~~~~~~~~d~~~~~~~  382 (582)
T d1flga_         305 WFYQHTPNDAWDFSGNNELVLFDYKA-KDGKIVKATAHADRNG-FFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPV  382 (582)
T ss_dssp             EEEESSTTCCSCCCCCCCCEEEEEEC-SSSCEEEEEEEECTTS-EEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEE
T ss_pred             hccccccccccccccccccccccccc-ccccccceeEeecccc-cEEeecccCCcccccccccCccccccccccccccce
Confidence            66654321          11122222 2333   344455555 899999999998876554333332222221110000


Q ss_pred             EEeCCCcEEEEEccCCc--ceeEEcc---cCCCeEEEEEeeCCCEEEEE-------------------------------
Q 038577          494 SSSWDKTVRLWNVFEGK--GSVESFP---HTHDVLTVVYRPDGRQLACS-------------------------------  537 (860)
Q Consensus       494 s~~~dg~i~iwd~~~~~--~~~~~~~---~~~~v~~~~~s~~~~~l~~~-------------------------------  537 (860)
                        ..++..........+  .......   ....-...+++|+..++++.                               
T Consensus       383 --~~~~~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  460 (582)
T d1flga_         383 --EREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRM  460 (582)
T ss_dssp             --ECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEES
T ss_pred             --eccccccccccccccccceEEECCCccCCcccccceecCCCCceeeeccccccccccccccccccccccccCcccccc
Confidence              000000000000000  0000000   00001112222222222111                               


Q ss_pred             --eCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceE
Q 038577          538 --TLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVL  615 (860)
Q Consensus       538 --~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~  615 (860)
                        ...|.|.-+|+.+|+.+...+.+...                     .+-..+..|..+++|+.||.++.+|.++|+.
T Consensus       461 ~~~~~G~l~AiD~~TG~i~W~~~~~~p~---------------------~~g~lstagglVF~Gt~dg~l~A~Da~TGe~  519 (582)
T d1flga_         461 YDDHVGSLRAMDPVSGKVVWEHKEHLPL---------------------WAGVLATAGNLVFTGTGDGYFKAFDAKSGKE  519 (582)
T ss_dssp             CSSCSEEEEEECTTTCCEEEEEEESSCC---------------------CSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccCCCCeEEEEcCCCCcEEeecCCCCCC---------------------ccceeEEcCCeEEEeCCCCeEEEEECCCCcE
Confidence              12367889999999999887765432                     1112345678888999999999999999999


Q ss_pred             EEEEeecc
Q 038577          616 LRRFQITH  623 (860)
Q Consensus       616 ~~~~~~~~  623 (860)
                      +-+++...
T Consensus       520 LW~~~~~~  527 (582)
T d1flga_         520 LWKFQTGS  527 (582)
T ss_dssp             EEEEECSS
T ss_pred             eEEEECCC
Confidence            99887543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=0.0074  Score=56.14  Aligned_cols=213  Identities=12%  Similarity=-0.019  Sum_probs=138.1

Q ss_pred             CCceEEEEecCCCCEEEEEE-cCCeEEEEECCCce----eEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccC
Q 038577          264 PSKVTACDYHRGLDMVVVGF-SNGVFGLYQMPDFV----CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRS  338 (860)
Q Consensus       264 ~~~v~~~~~~~~~~~l~~~~-~~g~i~~~~~~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~  338 (860)
                      ...+..+.|++..+.++... ..+.|...++....    ....+......+..+++.+.+..+..+....+.|.+.++..
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g  108 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCC
Confidence            34678899999888877665 45667766664321    12223333456778999998999998887778999999987


Q ss_pred             ceEEEEecCcccCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEE-eCCCcE
Q 038577          339 ESYILKQQGHYFDVNCLAYSPDSQLLATGA--DDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSA-SLDGTV  415 (860)
Q Consensus       339 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~-~~dg~i  415 (860)
                      ................+++.|...++....  ..+.|...++............-..+.++++.+.++.|.-+ ...+.|
T Consensus       109 ~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I  188 (266)
T d1ijqa1         109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  188 (266)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             ceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEE
Confidence            765555555556688999998766665543  33467777765444433333344667899999877766655 556788


Q ss_pred             EEEEccccceeeEeeCCC-CCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCccc
Q 038577          416 RAWDLFRYRNFRTFTTPS-SRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEG  478 (860)
Q Consensus       416 ~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~  478 (860)
                      ...++............. .....++++.  +..|..+....+.|+..+..+++....+.....
T Consensus       189 ~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~~~~~  250 (266)
T d1ijqa1         189 SSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAENLL  250 (266)
T ss_dssp             EEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEECSCS
T ss_pred             EEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEEEEcCCC
Confidence            888886544333333222 2345566665  456666665555888888887776665554433

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.92  E-value=0.0072  Score=61.14  Aligned_cols=257  Identities=13%  Similarity=0.151  Sum_probs=137.4

Q ss_pred             CCccCeeEEEEcCCCCEEEEE-----cCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEe------------
Q 038577           50 ESSSNICRIAVSPDGTFLLTV-----DENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGT------------  112 (860)
Q Consensus        50 ~h~~~v~~va~spdg~~la~~-----~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~------------  112 (860)
                      ++.-.+..+++||||+++|.+     ++.-.+++.|+.+|+.+...-.......++|++|++.|....            
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccc
Confidence            344445678899999999964     223578999999999875332222346789999999887651            


Q ss_pred             -----CCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeec---CCeEEEEeeccc--ccCccc-cc
Q 038577          113 -----GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSK---DLAVRLFYVKEK--LKGIHT-NK  181 (860)
Q Consensus       113 -----~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~---dg~v~vwd~~~~--~~~~~~-~~  181 (860)
                           ...|..|.+.+....-   .++.........+..+..++|+++++....   +....+|-+...  ...... ..
T Consensus       202 ~~~~~~~~v~~h~lgt~~~~d---~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  278 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQSED---ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK  278 (430)
T ss_dssp             CCCCCCCEEEEEETTSCGGGC---EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred             cccCCcceEEEEECCCCcccc---ccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccc
Confidence                 1267778777654321   122222223345677888999998875432   344555544432  111000 01


Q ss_pred             ce-EeecCCCcEEEEEEccCCCCCccceEEEEcC---CccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeee
Q 038577          182 PF-LLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR---DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRK  257 (860)
Q Consensus       182 ~~-~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (860)
                      .. ...........+. ..++.     +++....   ++.+...++.....                     ..|..   
T Consensus       279 ~~~~~~~~~~~~~~~~-~~~~~-----~~~~Tn~~a~~~~L~~~~~~~~~~---------------------~~w~~---  328 (430)
T d1qfma1         279 WVKLIDNFEGEYDYVT-NEGTV-----FTFKTNRHSPNYRLINIDFTDPEE---------------------SKWKV---  328 (430)
T ss_dssp             CEEEECSSSSCEEEEE-EETTE-----EEEEECTTCTTCEEEEEETTBCCG---------------------GGCEE---
T ss_pred             eeEeecccccceEEEe-cCCce-----eecccCcccccceeEEecCCCCcc---------------------ccceE---
Confidence            11 1222222222222 12221     2222222   23444444433211                     12322   


Q ss_pred             ccccCCCCceEEEEecCCCCEEEEEE-cC--CeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEcc---CCcE
Q 038577          258 DDFSQAPSKVTACDYHRGLDMVVVGF-SN--GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK---LGQL  331 (860)
Q Consensus       258 ~~~~~~~~~v~~~~~~~~~~~l~~~~-~~--g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~---~g~i  331 (860)
                       .+..+...+..-.+...+++|++.. .+  +.|++++..++............+..+...++...+.+..+.   -.++
T Consensus       329 -vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~  407 (430)
T d1qfma1         329 -LVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGII  407 (430)
T ss_dssp             -EECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEE
T ss_pred             -EecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeE
Confidence             2223334454444455555666554 55  458889998877766555555566666555666555544322   3678


Q ss_pred             EEEEccCce
Q 038577          332 LVWEWRSES  340 (860)
Q Consensus       332 ~v~d~~~~~  340 (860)
                      ..+|+.+++
T Consensus       408 y~~Dl~t~~  416 (430)
T d1qfma1         408 YHCDLTKEE  416 (430)
T ss_dssp             EEEETTSSS
T ss_pred             EEEECCCCC
Confidence            888888764

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.85  E-value=0.0043  Score=62.09  Aligned_cols=110  Identities=9%  Similarity=0.061  Sum_probs=76.8

Q ss_pred             CcEEEe-CCCEEEeeeC------C------eEEEEECCCCcEEee---ccCCccCeeEEEEcCCCCEEEEEcCC-CcEEE
Q 038577           16 GNAVLS-QNTKLISPVG------N------RVSVTDLIKSKTVTL---PVESSSNICRIAVSPDGTFLLTVDEN-QRCHF   78 (860)
Q Consensus        16 ~~~~~s-dg~~l~~~~~------~------~i~v~d~~~~~~~~~---~~~h~~~v~~va~spdg~~la~~~~d-~~i~v   78 (860)
                      +..+.. ||+.++++.-      +      .+.+||+.+++....   ...|.......++.+||++++.++.+ ..+.+
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~  102 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  102 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeE
Confidence            345555 9998888651      1      377999999876432   22344444567899999999988654 68999


Q ss_pred             EEcccCeEEEEee--cCCceeEEEECCCCCEEEEEeC-------CeEEEEeCCCCC
Q 038577           79 INLHCHVVLHRVR--FKYPVNAILFSPNGKYIAVGTG-------KLVQIWRSPGFK  125 (860)
Q Consensus        79 wd~~~~~~~~~~~--~~~~v~~~~fspdg~~la~~~~-------~~i~iwd~~~~~  125 (860)
                      ||..+..-...-.  ....-...+..+||+++++++.       +.+.+||..+.+
T Consensus       103 yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         103 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             ecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            9999876544322  2333457888899999999821       478999988764

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.77  E-value=0.0074  Score=60.25  Aligned_cols=160  Identities=13%  Similarity=0.073  Sum_probs=99.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCCC-----------cEEEEECCCCeeEE--E-eecCCCceEEEEEeeCCCEEEEEeCC-CcE
Q 038577          351 DVNCLAYSPDSQLLATGADDN-----------KVKVWTVSSGFCFV--T-FTEHTNAVTALHFMANNHSLLSASLD-GTV  415 (860)
Q Consensus       351 ~v~~~~~s~~~~~l~~~~~dg-----------~i~iwd~~~~~~~~--~-~~~~~~~v~~i~~~~~~~~l~s~~~d-g~i  415 (860)
                      .+.......+|+.++.|+.+.           .+.+||..++.-..  . ...+.....+.++.++++.++.|+.+ ..+
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            344455566888888887421           36789998764321  1 22233334466788999988888765 579


Q ss_pred             EEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC-----CeEEEEECCCCceEEEecC---------cc----
Q 038577          416 RAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS-----FEIFVWSMKTGRLLDILSG---------HE----  477 (860)
Q Consensus       416 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~i~v~d~~~~~~~~~~~~---------h~----  477 (860)
                      .+||..+..-...-..+........+..++|++++.++...     ..+.+||..+.+-...-..         +.    
T Consensus       101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~  180 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR  180 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred             eEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceee
Confidence            99999876654433334444456778888999999987532     2689999987754322110         00    


Q ss_pred             -cCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 038577          478 -GPVHGLVFSPTNATLASSSWDKTVRLWNVFEGK  510 (860)
Q Consensus       478 -~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~  510 (860)
                       ..-..+...++|+.++.++.++.+.+++..+..
T Consensus       181 ~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~  214 (387)
T d1k3ia3         181 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD  214 (387)
T ss_dssp             TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE
T ss_pred             ccceeEEEEeCCCCEEEecCcCCcEEecCcccCc
Confidence             001112334567777777666767777765554

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.70  E-value=0.0093  Score=60.31  Aligned_cols=244  Identities=8%  Similarity=0.047  Sum_probs=130.3

Q ss_pred             CcEEEe-CCCEEEeeeC--C----eEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCC---------------
Q 038577           16 GNAVLS-QNTKLISPVG--N----RVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDEN---------------   73 (860)
Q Consensus        16 ~~~~~s-dg~~l~~~~~--~----~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d---------------   73 (860)
                      +..++| ||+++|++.+  |    .|+++|+.+++.+..... ......++|++|++.|.....+               
T Consensus       128 ~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~  206 (430)
T d1qfma1         128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL  206 (430)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred             cceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCcccccccccCC
Confidence            346789 9999998742  3    499999999998654322 2223678999999988765322               


Q ss_pred             -CcEEEEEcccCe----EEEEee-cCCceeEEEECCCCCEEEEE----eCC--eEEEEeCCCCCcccceeE-EEEEeecc
Q 038577           74 -QRCHFINLHCHV----VLHRVR-FKYPVNAILFSPNGKYIAVG----TGK--LVQIWRSPGFKKEVFAFE-LIRTLADC  140 (860)
Q Consensus        74 -~~i~vwd~~~~~----~~~~~~-~~~~v~~~~fspdg~~la~~----~~~--~i~iwd~~~~~~~~~~~~-~~~~~~~h  140 (860)
                       ..|..|.+.+..    .+..-. ....+..+..++|++++...    ...  .+.+.+............ ........
T Consensus       207 ~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  286 (430)
T d1qfma1         207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNF  286 (430)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS
T ss_pred             cceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeeccc
Confidence             257777776542    222221 23346678889999998765    223  345555543322111100 11112222


Q ss_pred             CCCeEEEEEcCCCCeEEEee---cCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEE-cCCc
Q 038577          141 NDKVTALNWSPDSNYLLVGS---KDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTI-ARDC  216 (860)
Q Consensus       141 ~~~v~~l~~s~d~~~l~s~~---~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~-~~dg  216 (860)
                      .....-+. ..++.+++...   .++.+...++......   .....+..+...+..-.+...+.     +|+.. -.++
T Consensus       287 ~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~---~w~~vi~~~~~~~~~~~~~~~~~-----~lvl~~~~~~  357 (430)
T d1qfma1         287 EGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEES---KWKVLVPEHEKDVLEWVACVRSN-----FLVLCYLHDV  357 (430)
T ss_dssp             SSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGG---GCEEEECCCSSCEEEEEEEETTT-----EEEEEEEETT
T ss_pred             ccceEEEe-cCCceeecccCcccccceeEEecCCCCccc---cceEEecccCcceeeeEEEEECC-----EEEEEEEcCC
Confidence            22222222 22233333322   3456666666554111   11223344555555444444443     55544 3454


Q ss_pred             --cEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcC----CeEEE
Q 038577          217 --YMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSN----GVFGL  290 (860)
Q Consensus       217 --~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~----g~i~~  290 (860)
                        .|++++..++..                        ..    .+....+.+..+...++.+.+.....+    .++..
T Consensus       358 ~~~l~v~~~~~~~~------------------------~~----~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~  409 (430)
T d1qfma1         358 KNTLQLHDLATGAL------------------------LK----IFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYH  409 (430)
T ss_dssp             EEEEEEEETTTCCE------------------------EE----EECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEE
T ss_pred             EeEEEEEECCCCcE------------------------EE----ecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEE
Confidence              577777766421                        11    112223455556666666666655544    78888


Q ss_pred             EECCCce
Q 038577          291 YQMPDFV  297 (860)
Q Consensus       291 ~~~~~~~  297 (860)
                      +|+.+++
T Consensus       410 ~Dl~t~~  416 (430)
T d1qfma1         410 CDLTKEE  416 (430)
T ss_dssp             EETTSSS
T ss_pred             EECCCCC
Confidence            8887765

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.58  E-value=0.026  Score=51.25  Aligned_cols=226  Identities=13%  Similarity=0.203  Sum_probs=148.9

Q ss_pred             CcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEE
Q 038577          329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLS  408 (860)
Q Consensus       329 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s  408 (860)
                      .++.+.|+.......+.+-   .-.+.-.+|..+.||.-+ ..++.+||+++.+.+..+.- ..+|.-=.|-.+. .|+.
T Consensus        45 ~~VvIidl~n~~~~~Rrpi---~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~l  118 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVAL  118 (327)
T ss_dssp             EEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSSS-EEEE
T ss_pred             ceEEEEECCCCCcceeccc---chhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCCC-EEEE
Confidence            5678888876543222211   122445688888888876 46899999999999888764 4456555565443 5555


Q ss_pred             EeCCCcEEEEEcccc-ceeeEeeCC---CCCcEEEEEECCCCCEEEEEec---CC---CeEEEEECCCCceEEEecCccc
Q 038577          409 ASLDGTVRAWDLFRY-RNFRTFTTP---SSRQFVSLASDQSGEVICAGTL---DS---FEIFVWSMKTGRLLDILSGHEG  478 (860)
Q Consensus       409 ~~~dg~i~~wd~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~---~~---~~i~v~d~~~~~~~~~~~~h~~  478 (860)
                      .+. ..|+-|++... .+.+.+...   ...++.....++++++++..+-   ++   |.+++|..+ .+.-+.+.||.+
T Consensus       119 VT~-taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~e-r~~sQ~ieGhaa  196 (327)
T d1utca2         119 VTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGHAA  196 (327)
T ss_dssp             ECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT-TTEEEEECCSEE
T ss_pred             EcC-CceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEec-cCcCccccceee
Confidence            543 47999999543 344444433   2467888899999998876432   22   378899977 455677888877


Q ss_pred             CeEEEEEcCCC---CEEEEEe---CCCcEEEEEccCCcc---e-----eEEc-c---cCCCeEEEEEeeCCCEEEEEeCC
Q 038577          479 PVHGLVFSPTN---ATLASSS---WDKTVRLWNVFEGKG---S-----VESF-P---HTHDVLTVVYRPDGRQLACSTLD  540 (860)
Q Consensus       479 ~v~~l~~s~~~---~~l~s~~---~dg~i~iwd~~~~~~---~-----~~~~-~---~~~~v~~~~~s~~~~~l~~~~~d  540 (860)
                      ....+.+..+.   +.++.+.   ..+.+.+.++.....   .     .... +   ..+-..++..|+.-..++..+.-
T Consensus       197 ~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~  276 (327)
T d1utca2         197 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY  276 (327)
T ss_dssp             EEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETT
T ss_pred             eeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecC
Confidence            66666554221   2333332   236788888865321   1     1111 1   23446788889888899999999


Q ss_pred             CeEEEEeCCCCceeEEEecccc
Q 038577          541 GQIHFWDPLNGELMYTIEGRRD  562 (860)
Q Consensus       541 g~i~iwd~~~~~~~~~~~~~~~  562 (860)
                      |.|++||+.++.++..-+-..+
T Consensus       277 G~i~lyDleTgt~i~~nRIs~~  298 (327)
T d1utca2         277 GYIHLYDLETGTCIYMNRISGE  298 (327)
T ss_dssp             SEEEEEETTTCCEEEEEECCSS
T ss_pred             cEEEEEEcccccEEEEeecCCC
Confidence            9999999999999988776554

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=97.00  E-value=0.15  Score=48.29  Aligned_cols=211  Identities=16%  Similarity=0.210  Sum_probs=121.9

Q ss_pred             eCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEE---EEEECCCCCEEEEEecC---CCeEEEEECCC-CceEEEe
Q 038577          401 ANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFV---SLASDQSGEVICAGTLD---SFEIFVWSMKT-GRLLDIL  473 (860)
Q Consensus       401 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~i~v~d~~~-~~~~~~~  473 (860)
                      |+...++.....+-|.+||+ .++.++.+.......|-   .+.+......+++++..   ...|.+|.+.. ...+..+
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL-~G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~  116 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSL-EGKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI  116 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEET-TCCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred             cCccEEEEEcCcCCEEEEcC-CCcEEEecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence            34556777777777999998 47777766543322221   12233333345555532   12677777652 3333333


Q ss_pred             cCc-------ccCeEEEEE--cCC-CC-EEEEEeCCCcEEEEEccC---Ccc---eeEEcccCCCeEEEEEeeCCCEEEE
Q 038577          474 SGH-------EGPVHGLVF--SPT-NA-TLASSSWDKTVRLWNVFE---GKG---SVESFPHTHDVLTVVYRPDGRQLAC  536 (860)
Q Consensus       474 ~~h-------~~~v~~l~~--s~~-~~-~l~s~~~dg~i~iwd~~~---~~~---~~~~~~~~~~v~~~~~s~~~~~l~~  536 (860)
                      ...       ...+..+|+  ++. +. +++....+|.+..|.+..   +..   ....+.....+..+++.++...|+.
T Consensus       117 ~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~Lyi  196 (353)
T d1h6la_         117 TDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYI  196 (353)
T ss_dssp             SCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred             cccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEE
Confidence            221       124667776  654 54 455666789999887743   221   2223356678999999999999999


Q ss_pred             EeCCCeEEEEeCC--CCc---eeEEEecccccCCCccccccccccccCCCCcEEEEEEec--CCC-EEEEec-CCCeEEE
Q 038577          537 STLDGQIHFWDPL--NGE---LMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSA--DGS-YILAGG-SSKYICM  607 (860)
Q Consensus       537 ~~~dg~i~iwd~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~--~g~-~l~~~~-~dg~v~v  607 (860)
                      +-++.-|..++..  .+.   .+....+..                  -...+..|+.-.  +++ ||++++ .+.+..+
T Consensus       197 sEE~~Giw~~~a~~~~~~~~~~i~~~~g~~------------------l~~D~EGlaiy~~~~~~GylivSsQG~n~f~v  258 (353)
T d1h6la_         197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRH------------------LTPDIEGLTIYYAADGKGYLLASSQGNSSYAI  258 (353)
T ss_dssp             EETTTEEEEEESSTTSCSCCEEEEECSSSS------------------CCSCEEEEEEEECGGGCEEEEEEEGGGTEEEE
T ss_pred             ecCccceEEEEeccCCCccceeeecccCcc------------------ccCCccccEEEEcCCCCeEEEEEcCCCCeEEE
Confidence            9888767666653  121   121111110                  012367776543  333 555444 6789999


Q ss_pred             EECCC-ceEEEEEeecccccccce
Q 038577          608 YDVAD-QVLLRRFQITHNLSLDGV  630 (860)
Q Consensus       608 wd~~~-~~~~~~~~~~~~~~~~~~  630 (860)
                      ||..+ .+.+..|....+..++|+
T Consensus       259 ydr~~~~~~~g~F~i~~~~~iDgv  282 (353)
T d1h6la_         259 YERQGQNKYVADFQITDGPETDGT  282 (353)
T ss_dssp             EESSTTCCEEEEEEECCCSSSCCC
T ss_pred             EecCCCccccceEEEecCCCcCcc
Confidence            99987 477778876554444443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.88  E-value=0.76  Score=43.37  Aligned_cols=207  Identities=14%  Similarity=0.190  Sum_probs=114.4

Q ss_pred             CCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEE------CCCCCEEEEEe-----CCeEEEEeCCCCCcccce
Q 038577           62 PDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILF------SPNGKYIAVGT-----GKLVQIWRSPGFKKEVFA  130 (860)
Q Consensus        62 pdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~f------spdg~~la~~~-----~~~i~iwd~~~~~~~~~~  130 (860)
                      |+..+++....++-|.+||+. |+.+..+. .+.++.|..      ...+.-++++.     ...|.+|.+.....    
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~-~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~----  111 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG----  111 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC-SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTT----
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc-cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccc----
Confidence            455677766777779999985 88887765 345555543      22333455552     24688888764332    


Q ss_pred             eEEEEEeecc-------CCCeEEEEE--cCC-CC-eEEEeecCCeEEEEeecccccC-cccccceEeecCCCcEEEEEEc
Q 038577          131 FELIRTLADC-------NDKVTALNW--SPD-SN-YLLVGSKDLAVRLFYVKEKLKG-IHTNKPFLLLGHRDSVVGCFFS  198 (860)
Q Consensus       131 ~~~~~~~~~h-------~~~v~~l~~--s~d-~~-~l~s~~~dg~v~vwd~~~~~~~-~~~~~~~~~~~h~~~i~~~~~~  198 (860)
                        .+..+...       ...+..+|+  ++. |. ++++...+|.+..|.+...... +.......+ .-...+.+|.+.
T Consensus       112 --~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f-~~~~q~EGCVvD  188 (353)
T d1h6la_         112 --TLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF-KMNSQTEGMAAD  188 (353)
T ss_dssp             --EEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE-ECSSCEEEEEEE
T ss_pred             --ccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc-CCCCccceEEEe
Confidence              12222211       124667776  664 44 5666778899999988654122 111222233 345578899999


Q ss_pred             cCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecC--CC
Q 038577          199 VDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHR--GL  276 (860)
Q Consensus       199 ~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~  276 (860)
                      ....     .|+.+-++.-++.++.+......                   ...  .....-......+..++.-.  ++
T Consensus       189 de~~-----~LyisEE~~Giw~~~a~~~~~~~-------------------~~~--i~~~~g~~l~~D~EGlaiy~~~~~  242 (353)
T d1h6la_         189 DEYG-----SLYIAEEDEAIWKFSAEPDGGSN-------------------GTV--IDRADGRHLTPDIEGLTIYYAADG  242 (353)
T ss_dssp             TTTT-----EEEEEETTTEEEEEESSTTSCSC-------------------CEE--EEECSSSSCCSCEEEEEEEECGGG
T ss_pred             CCCC-----cEEEecCccceEEEEeccCCCcc-------------------cee--eecccCccccCCccccEEEEcCCC
Confidence            8888     89999887655444443211100                   000  00010111234566666432  33


Q ss_pred             C-EE-EEEEcCCeEEEEECCCc-eeEEEEe
Q 038577          277 D-MV-VVGFSNGVFGLYQMPDF-VCIHLLS  303 (860)
Q Consensus       277 ~-~l-~~~~~~g~i~~~~~~~~-~~~~~~~  303 (860)
                      + +| ++...++++.+|+.... +.+..++
T Consensus       243 ~GylivSsQG~n~f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         243 KGYLLASSQGNSSYAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             CEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             CeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence            3 44 44456789999998653 4444443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.73  E-value=0.88  Score=43.06  Aligned_cols=185  Identities=10%  Similarity=0.053  Sum_probs=107.7

Q ss_pred             eEEEEEcCCCCEEEEEeC------------CCcEEEEECCCCeeEE-Ee--ecC-----CCceEEEEE--eeCCC-EEEE
Q 038577          352 VNCLAYSPDSQLLATGAD------------DNKVKVWTVSSGFCFV-TF--TEH-----TNAVTALHF--MANNH-SLLS  408 (860)
Q Consensus       352 v~~~~~s~~~~~l~~~~~------------dg~i~iwd~~~~~~~~-~~--~~~-----~~~v~~i~~--~~~~~-~l~s  408 (860)
                      ...++..|+|..+++++.            .|.|.++|+.+..... .+  .+.     .-....+.+  .+++. +|++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            446777888876665532            4889999987653221 22  111     113455554  33554 3444


Q ss_pred             Ee---CCCcEEEEEccccc----eeeEeeCCCCCcEEEEEECCCCCEEEEEecCC--------------CeEEEEECCCC
Q 038577          409 AS---LDGTVRAWDLFRYR----NFRTFTTPSSRQFVSLASDQSGEVICAGTLDS--------------FEIFVWSMKTG  467 (860)
Q Consensus       409 ~~---~dg~i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~i~v~d~~~~  467 (860)
                      ..   ...+|.+|++....    ...++..+.......+++..++.++++-....              ....+|....+
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence            43   34578888875432    23445556666788999999998888732110              12334444444


Q ss_pred             ceEEEecCcccCeEEEEEcCCCCEEEEEe-CCCcEEEEEccCCcceeE--EcccCCCeEEEEEee-CCCEEEEE
Q 038577          468 RLLDILSGHEGPVHGLVFSPTNATLASSS-WDKTVRLWNVFEGKGSVE--SFPHTHDVLTVVYRP-DGRQLACS  537 (860)
Q Consensus       468 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~-~~~~l~~~  537 (860)
                      +...... .-...+.|+++||+++|+.+. ..+.|++|++........  ...-....-.+.+.+ +|.+.+.+
T Consensus       197 ~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         197 DVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             CEEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             ceEEEcC-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            3332222 345678999999998776554 578899999875542222  223445567788876 45554444

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.28  Score=45.62  Aligned_cols=217  Identities=13%  Similarity=0.095  Sum_probs=98.6

Q ss_pred             CcEEEEEccCceEEEEe--cCcccCeEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCeeEEEeec--CCCceE
Q 038577          329 GQLLVWEWRSESYILKQ--QGHYFDVNCLAYSPDSQLLATGAD---------DNKVKVWTVSSGFCFVTFTE--HTNAVT  395 (860)
Q Consensus       329 g~i~v~d~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~--~~~~v~  395 (860)
                      ..+.+||..+++....-  +.....-..+.+  ++..++.|+.         -..+.+||..+......-..  ....-.
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~   96 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG   96 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred             ceEEEEECCCCeEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceeccee
Confidence            46789999987654432  111111222222  4556666552         13577888776544331111  111111


Q ss_pred             EEEEeeCCCEEEEEeCCCc-----EEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC----CeEEEEECCC
Q 038577          396 ALHFMANNHSLLSASLDGT-----VRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS----FEIFVWSMKT  466 (860)
Q Consensus       396 ~i~~~~~~~~l~s~~~dg~-----i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~i~v~d~~~  466 (860)
                      ++  ..+++.++.++.++.     ...++..+..-......+....-.++... ++..++.|+.+.    ..+..||..+
T Consensus        97 ~~--~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~  173 (288)
T d1zgka1          97 VG--VIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPER  173 (288)
T ss_dssp             EE--EETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred             cc--ccceeeEEecceecccccceeeeeccccCccccccccccccccceeeee-eecceEecCcccccccceEEEeeccc
Confidence            22  225555565554443     34455555433222212211111222222 344555554432    2578888876


Q ss_pred             CceEEEecCccc-CeEEEEEcCCCCEEEEEeCC-----CcEEEEEccCCcceeEEcccCCCe-EEEEEeeCCCEEEEEeC
Q 038577          467 GRLLDILSGHEG-PVHGLVFSPTNATLASSSWD-----KTVRLWNVFEGKGSVESFPHTHDV-LTVVYRPDGRQLACSTL  539 (860)
Q Consensus       467 ~~~~~~~~~h~~-~v~~l~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~  539 (860)
                      .+....-..... .-.+... .++..++.++.+     .....+|..+.+............ .+++ ..++++++.|+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~-~~~~~l~v~GG~  251 (288)
T d1zgka1         174 NEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGIT-VHQGRIYVLGGY  251 (288)
T ss_dssp             TEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCB
T ss_pred             cccccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEE-EECCEEEEEecC
Confidence            654322111111 1112222 245566665544     346677776654221111111111 1222 337788888765


Q ss_pred             CC-----eEEEEeCCCCc
Q 038577          540 DG-----QIHFWDPLNGE  552 (860)
Q Consensus       540 dg-----~i~iwd~~~~~  552 (860)
                      ++     .+.+||+.+.+
T Consensus       252 ~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         252 DGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             CSSCBCCEEEEEETTTTE
T ss_pred             CCCeecceEEEEECCCCE
Confidence            44     37889988764

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.51  Score=43.63  Aligned_cols=220  Identities=10%  Similarity=0.010  Sum_probs=99.4

Q ss_pred             CeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEcc--------CCcEEEEEccCceEEEEecCc--ccCeEEE
Q 038577          286 GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK--------LGQLLVWEWRSESYILKQQGH--YFDVNCL  355 (860)
Q Consensus       286 g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~--------~g~i~v~d~~~~~~~~~~~~~--~~~v~~~  355 (860)
                      ..+.+||+.+.+-...-......-...+..-++..+++++..        ...+.+||..+......-...  ...-.++
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~   98 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVG   98 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEE
T ss_pred             ceEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceecc
Confidence            457889988765443222222222222233355555554421        246778888776554322111  1111222


Q ss_pred             EEcCCCCEEEEEeCCCc-----EEEEECCCCeeEEEeecC--CCceEEEEEeeCCCEEEEEeCC-----CcEEEEEcccc
Q 038577          356 AYSPDSQLLATGADDNK-----VKVWTVSSGFCFVTFTEH--TNAVTALHFMANNHSLLSASLD-----GTVRAWDLFRY  423 (860)
Q Consensus       356 ~~s~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~s~~~d-----g~i~~wd~~~~  423 (860)
                      .+  +++.++.++.++.     ...++..+..-.......  .... ++.. .++..++.++.+     ..+..||..+.
T Consensus        99 ~~--~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~-~~~~~~~~GG~~~~~~~~~~~~~d~~~~  174 (288)
T d1zgka1          99 VI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV-GVAV-LNRLLYAVGGFDGTNRLNSAECYYPERN  174 (288)
T ss_dssp             EE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred             cc--ceeeEEecceecccccceeeeeccccCccccccccccccccc-eeee-eeecceEecCcccccccceEEEeecccc
Confidence            22  5566665554333     444666554332211111  1111 1222 234455555543     34677887665


Q ss_pred             ceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC----CeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCC
Q 038577          424 RNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS----FEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDK  499 (860)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg  499 (860)
                      +-...-..+......+.+. ..+..++.++.++    .....+|..+.+....-.........-+...++++++.|+.++
T Consensus       175 ~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~  253 (288)
T d1zgka1         175 EWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDG  253 (288)
T ss_dssp             EEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred             ccccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEECCEEEEEecCCC
Confidence            4332222221111122222 2344555554432    1567888776654432221111121112223677888776554


Q ss_pred             -----cEEEEEccCCc
Q 038577          500 -----TVRLWNVFEGK  510 (860)
Q Consensus       500 -----~i~iwd~~~~~  510 (860)
                           .+.+||+.+.+
T Consensus       254 ~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         254 HTFLDSVECYDPDTDT  269 (288)
T ss_dssp             SCBCCEEEEEETTTTE
T ss_pred             CeecceEEEEECCCCE
Confidence                 37788887654

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.13  E-value=2.5  Score=40.11  Aligned_cols=176  Identities=11%  Similarity=0.012  Sum_probs=100.6

Q ss_pred             cCCcEEEe-CCCEEEeeeCCeEEEEECCCC---------cEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEccc
Q 038577           14 RGGNAVLS-QNTKLISPVGNRVSVTDLIKS---------KTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHC   83 (860)
Q Consensus        14 ~~~~~~~s-dg~~l~~~~~~~i~v~d~~~~---------~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~   83 (860)
                      +...++++ ...+++.+....++|..++.-         .........-..|..++|+-|  .|+.. .++.+..++..+
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~~~  114 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDLEE  114 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEESSS
T ss_pred             ccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEeec
Confidence            44568888 677888888888888774211         000000011235889999755  45544 346677787766


Q ss_pred             CeEEEEee-cCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecC
Q 038577           84 HVVLHRVR-FKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKD  162 (860)
Q Consensus        84 ~~~~~~~~-~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d  162 (860)
                      -....... ...++..+.++|.. .++...++.+.++++..+...... .-...+ .-.+.+.+++|++.|..++++..+
T Consensus       115 l~~~~~~~~~~~~~~~~~~~p~~-~~l~~~~~~~~~~~l~~~~~~~~~-~~v~~~-~~~~~~~~v~ws~kgkq~v~~~g~  191 (381)
T d1xipa_         115 LSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQLA-QNVTSF-DVTNSQLAVLLKDRSFQSFAWRNG  191 (381)
T ss_dssp             TTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEEEE-ESEEEE-EECSSEEEEEETTSCEEEEEEETT
T ss_pred             cccccccccccccccceecCCce-eEEEecCCCEEEEEeccCcccccc-CCcceE-EecCCceEEEEeCCcEEEEEeCCC
Confidence            44333333 56788999998853 444558899999999887521000 000111 124668889999888888876433


Q ss_pred             CeEEEE-eecccccCcccccceEeecCCCcEEEEEEccCCC
Q 038577          163 LAVRLF-YVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKK  202 (860)
Q Consensus       163 g~v~vw-d~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~  202 (860)
                      + ..+- ++...      ............+.++.|..+..
T Consensus       192 ~-~q~k~~i~~~------~~~~~p~~~~~~v~sI~WL~~~~  225 (381)
T d1xipa_         192 E-MEKQFEFSLP------SELEELPVEEYSPLSVTILSPQD  225 (381)
T ss_dssp             E-EEEEEEECCC------HHHHTSCTTTSEEEEEEESSSSE
T ss_pred             c-eeeccCCCCc------cccCCCcCCCcceeEEEEecCce
Confidence            2 2211 11111      00111112345688899987765

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.87  E-value=2.7  Score=39.52  Aligned_cols=151  Identities=18%  Similarity=0.221  Sum_probs=90.0

Q ss_pred             CCcEEEe-CCCEEEeee-------------CCeEEEEECCCCcEEeec---cCC-----ccCeeEEEE--cCCCC-EEEE
Q 038577           15 GGNAVLS-QNTKLISPV-------------GNRVSVTDLIKSKTVTLP---VES-----SSNICRIAV--SPDGT-FLLT   69 (860)
Q Consensus        15 ~~~~~~s-dg~~l~~~~-------------~~~i~v~d~~~~~~~~~~---~~h-----~~~v~~va~--spdg~-~la~   69 (860)
                      .-.+++. ||..++++.             .|.|.++|+.+.......   .+.     ......+.+  .+||+ +|++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            3468888 887776542             278999999876542111   111     112334443  46676 3455


Q ss_pred             E---cCCCcEEEEEcccC--eEEEE--eec--CCceeEEEECCCCCEEEEE----------------eCCeEEEEeCCCC
Q 038577           70 V---DENQRCHFINLHCH--VVLHR--VRF--KYPVNAILFSPNGKYIAVG----------------TGKLVQIWRSPGF  124 (860)
Q Consensus        70 ~---~~d~~i~vwd~~~~--~~~~~--~~~--~~~v~~~~fspdg~~la~~----------------~~~~i~iwd~~~~  124 (860)
                      .   ....+|.++++...  +..+.  +.+  ....+++++..+|.++++-                .-+...+|..+.+
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence            4   34567888887533  22222  222  2447899999999888883                0123445555544


Q ss_pred             CcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEe-ecCCeEEEEeeccc
Q 038577          125 KKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVG-SKDLAVRLFYVKEK  173 (860)
Q Consensus       125 ~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~-~~dg~v~vwd~~~~  173 (860)
                      +.        ......-...+.++++||+++|+.+ +..+.|++|++...
T Consensus       197 ~~--------~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         197 DV--------RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             CE--------EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             ce--------EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            31        2222233457899999999877665 45678999998755

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.06  E-value=2.5  Score=40.13  Aligned_cols=187  Identities=7%  Similarity=-0.013  Sum_probs=102.4

Q ss_pred             CceeEEEECCCCCEEEEEeCCeEEEEeCCCCC------cccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEE
Q 038577           94 YPVNAILFSPNGKYIAVGTGKLVQIWRSPGFK------KEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRL  167 (860)
Q Consensus        94 ~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~------~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~v  167 (860)
                      ....-++.++...++++++...+.|.....-+      ....++.....+    ..|..++|+.|  .|+.. .++.+..
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~i----p~v~~vafs~d--~l~v~-~~~~l~~  109 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEI----PDVIFVCFHGD--QVLVS-TRNALYS  109 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEEC----TTEEEEEEETT--EEEEE-ESSEEEE
T ss_pred             cccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccCC----CCeEEEEeeCC--EEEEE-eCCCEEE
Confidence            45778899988888888877788887743110      000112222222    26899999865  45544 4456777


Q ss_pred             EeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcc
Q 038577          168 FYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPER  247 (860)
Q Consensus       168 wd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (860)
                      ++...-      ........-..++.++.+.|.       .++....++.+.++++.....                   
T Consensus       110 ~~~~~l------~~~~~~~~~~~~~~~~~~~p~-------~~~l~~~~~~~~~~~l~~~~~-------------------  157 (381)
T d1xipa_         110 LDLEEL------SEFRTVTSFEKPVFQLKNVNN-------TLVILNSVNDLSALDLRTKST-------------------  157 (381)
T ss_dssp             EESSST------TCEEEEEECSSCEEEEEECSS-------EEEEEETTSEEEEEETTTCCE-------------------
T ss_pred             EEeecc------ccccccccccccccceecCCc-------eeEEEecCCCEEEEEeccCcc-------------------
Confidence            777654      223333334566777887765       677777788888888876421                   


Q ss_pred             eeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEE-EECCCceeEEEEeecCceeEEEEEeeCCCEEEEE
Q 038577          248 RVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGL-YQMPDFVCIHLLSISREKITTAVFNELGNWLVFG  324 (860)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~-~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  324 (860)
                          -.+.....-....+.+.+++|++.|..++++..++ ..+ -++.....+.........+.++.|-.+..++++-
T Consensus       158 ----~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         158 ----KQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             ----EEEEESEEEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             ----ccccCCcceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence                01100000001124588888888888887764332 111 1111111000001123467788887665555544

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=92.31  E-value=2.5  Score=34.79  Aligned_cols=144  Identities=15%  Similarity=0.081  Sum_probs=80.5

Q ss_pred             ccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCe------EEEEeec--CCceeEEEECCCCCEEEEEeCCeEEEEeCCC
Q 038577           52 SSNICRIAVSPDGTFLLTVDENQRCHFINLHCHV------VLHRVRF--KYPVNAILFSPNGKYIAVGTGKLVQIWRSPG  123 (860)
Q Consensus        52 ~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~------~~~~~~~--~~~v~~~~fspdg~~la~~~~~~i~iwd~~~  123 (860)
                      -..+.-++|||+|++.|+-.  +.++.=...+..      +-.++..  =..-..+.|.|.|-+-|+. ++.++-=..++
T Consensus        39 ~~n~~~i~fsP~G~LyaVr~--~~lY~Gp~~s~~nq~wf~~atrIG~ggWn~FkflffdP~G~LyaVt-~~~LYr~~pPt  115 (235)
T d1tl2a_          39 WSNFKFLFLSPGGELYGVLN--DKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVS-KDKLYKASPPQ  115 (235)
T ss_dssp             CTTCSEEEECTTSCEEEEET--TEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEE-TTEEEEESCCC
T ss_pred             ccceeEEEECCCCcEEEEEC--CeEEECCCCCcchHHHHHhhhhcccCcccceEEEEECCCceEEEec-CcceecCCcCc
Confidence            45678899999999888764  344433322211      1112221  1235678999999888887 56544433443


Q ss_pred             CCcccceeEEEEEeec--cCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEe-ecCCCcEEEEEEccC
Q 038577          124 FKKEVFAFELIRTLAD--CNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLL-LGHRDSVVGCFFSVD  200 (860)
Q Consensus       124 ~~~~~~~~~~~~~~~~--h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~-~~h~~~i~~~~~~~~  200 (860)
                      .+.+  .+.-.....+  --+.+..+-|.|+|.+-++ ..| .+.-+.........+......+ .++-.....+.|+|+
T Consensus       116 n~~q--~W~g~a~~vG~~gw~df~~lFFdP~G~LYaV-~~~-~l~k~~pP~~~~d~WL~~st~igr~~w~~~~fi~Fs~d  191 (235)
T d1tl2a_         116 SDTD--NWIARATEVGSGGWSGFKFLFFHPNGYLYAV-HGQ-QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSV  191 (235)
T ss_dssp             STTC--CHHHHSEEEECSSGGGEEEEEECTTSCEEEE-ETT-EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTT
T ss_pred             ccch--hhhhhhhhhccCCcCceeEEEECCCceEEEE-ECC-cEEEcCCCCCCCchhhhhhhhhccCcccCceEEEECCC
Confidence            3321  1100011122  2234778999999976665 344 4666654443222111222333 367777889999999


Q ss_pred             CC
Q 038577          201 KK  202 (860)
Q Consensus       201 ~~  202 (860)
                      +.
T Consensus       192 G~  193 (235)
T d1tl2a_         192 GT  193 (235)
T ss_dssp             SC
T ss_pred             Cc
Confidence            96

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.64  E-value=6.8  Score=38.41  Aligned_cols=110  Identities=15%  Similarity=0.137  Sum_probs=64.1

Q ss_pred             ccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee---------cCCceeEEEECCC---CCEEEEE-e------
Q 038577           52 SSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR---------FKYPVNAILFSPN---GKYIAVG-T------  112 (860)
Q Consensus        52 ~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~---------~~~~v~~~~fspd---g~~la~~-~------  112 (860)
                      -...++|+|.|||+++++--..|.|++++..+++......         .+.....|+|+|+   ..+|... .      
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~  105 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence            3567899999999988876557999999988776543332         1345678999985   3444332 1      


Q ss_pred             -C----Ce--EEEEeCCCCCcccceeE-EEEEee-ccCCCeEEEEEcCCCCeEEEeec
Q 038577          113 -G----KL--VQIWRSPGFKKEVFAFE-LIRTLA-DCNDKVTALNWSPDSNYLLVGSK  161 (860)
Q Consensus       113 -~----~~--i~iwd~~~~~~~~~~~~-~~~~~~-~h~~~v~~l~~s~d~~~l~s~~~  161 (860)
                       +    +.  +..+............. ++..+. ........|.|.|||.+.++.+.
T Consensus       106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence             0    12  33333333322211111 112221 11233578999999987776553

>d1k8kg_ a.118.13.1 (G:) Arp2/3 complex 16 kDa subunit ARPC5 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Arp2/3 complex 16 kDa subunit ARPC5
family: Arp2/3 complex 16 kDa subunit ARPC5
domain: Arp2/3 complex 16 kDa subunit ARPC5
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.89  E-value=0.67  Score=36.20  Aligned_cols=68  Identities=19%  Similarity=0.241  Sum_probs=55.7

Q ss_pred             HHHHHhhcCcCCcHHHHHHHHhc-----CCh-------HHHHHHhHhcCCCccchhcccCCHHHHHHHHHHHHhhhccCC
Q 038577          727 PEAVDAALNEDQPKRALILSLRL-----NED-------NLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLLESCP  794 (860)
Q Consensus       727 ~~~~~~~~~~~~~~~~l~~~~~~-----~~~-------~~~~~~l~~~~~~~i~~~~~~l~~~~~~~ll~~l~~~l~~~~  794 (860)
                      ..+++..+..+.+..+|..+|..     ++.       ..++++|.++..++|+..+..|..+....|++||=+-++...
T Consensus        31 e~eVrslL~~G~~~~AL~~~L~~pP~~~~~~~~Kd~~~~~vl~VL~siK~~dI~~~v~~L~~~~~D~LMKYiYkG~~~p~  110 (143)
T d1k8kg_          31 EGEVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPS  110 (143)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTSSCCSSCSCHHHHHHHHHHHHHHHHHSCGGGHHHHHHTSCHHHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHhcCCHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChHhHHHHHHHHHHhccCCC
Confidence            35567777778888888877753     222       368899999999999999999999999999999999998643

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=88.75  E-value=5.4  Score=32.76  Aligned_cols=153  Identities=10%  Similarity=0.057  Sum_probs=79.6

Q ss_pred             CCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeecc--CCCeEEEEEcCCCCeEEEeecCCeEEEEee
Q 038577           93 KYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADC--NDKVTALNWSPDSNYLLVGSKDLAVRLFYV  170 (860)
Q Consensus        93 ~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~  170 (860)
                      -..+.-|+|||+|++.|+-.+ .++.=.+.+...+.- +.. .+..+.  =+....+-|.|.|-+-++.  ++  .++.-
T Consensus        39 ~~n~~~i~fsP~G~LyaVr~~-~lY~Gp~~s~~nq~w-f~~-atrIG~ggWn~FkflffdP~G~LyaVt--~~--~LYr~  111 (235)
T d1tl2a_          39 WSNFKFLFLSPGGELYGVLND-KIYKGTPPTHDNDNW-MGR-AKKIGNGGWNQFQFLFFDPNGYLYAVS--KD--KLYKA  111 (235)
T ss_dssp             CTTCSEEEECTTSCEEEEETT-EEEEESCCCSTTCCH-HHH-CEEEECSCGGGCSEEEECTTSCEEEEE--TT--EEEEE
T ss_pred             ccceeEEEECCCCcEEEEECC-eEEECCCCCcchHHH-HHh-hhhcccCcccceEEEEECCCceEEEec--Cc--ceecC
Confidence            345778999999999998755 555544443322110 101 111122  2235678899998655544  35  45544


Q ss_pred             cccc--cCcccccceEeec--CCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCc
Q 038577          171 KEKL--KGIHTNKPFLLLG--HRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPE  246 (860)
Q Consensus       171 ~~~~--~~~~~~~~~~~~~--h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~  246 (860)
                      ....  ..-+... ....+  .=..+..+.|.|+|.      |+....|+ +.-+....+..                  
T Consensus       112 ~pPtn~~q~W~g~-a~~vG~~gw~df~~lFFdP~G~------LYaV~~~~-l~k~~pP~~~~------------------  165 (235)
T d1tl2a_         112 SPPQSDTDNWIAR-ATEVGSGGWSGFKFLFFHPNGY------LYAVHGQQ-FYKALPPVSNQ------------------  165 (235)
T ss_dssp             SCCCSTTCCHHHH-SEEEECSSGGGEEEEEECTTSC------EEEEETTE-EEEECCCSSTT------------------
T ss_pred             CcCcccchhhhhh-hhhhccCCcCceeEEEECCCce------EEEEECCc-EEEcCCCCCCC------------------
Confidence            3321  0000001 11222  234577899999994      66665554 55554333211                  


Q ss_pred             ceeeeEEeeeeccccCCCCceEEEEecCCCCEEEE
Q 038577          247 RRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVV  281 (860)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  281 (860)
                         ..|--.....-..+-.....+.|+|+|++..+
T Consensus       166 ---d~WL~~st~igr~~w~~~~fi~Fs~dG~L~~v  197 (235)
T d1tl2a_         166 ---DNWLARATKIGQGGWDTFKFLFFSSVGTLFGV  197 (235)
T ss_dssp             ---CCHHHHCEEEESSSGGGEEEEEECTTSCEEEE
T ss_pred             ---chhhhhhhhhccCcccCceEEEECCCCcEEEE
Confidence               12211111111233345678999999998776

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=86.90  E-value=7.7  Score=32.46  Aligned_cols=231  Identities=13%  Similarity=0.097  Sum_probs=124.1

Q ss_pred             CCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEE-cCCCCEEEEE------eCCCcEEEEECCCCeeEEEeec
Q 038577          317 LGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAY-SPDSQLLATG------ADDNKVKVWTVSSGFCFVTFTE  389 (860)
Q Consensus       317 ~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~------~~dg~i~iwd~~~~~~~~~~~~  389 (860)
                      +++.+++.+...|.+.++-+..++.+..-   ..+|..... .+.-.++..+      -.-..|.+-++...-....+..
T Consensus        24 ~~d~ll~~~~seG~vni~~l~g~~~vkLt---kePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~s  100 (313)
T d2hu7a1          24 DGDKLLVVGFSEGSVNAYLYDGGETVKLN---REPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEA  100 (313)
T ss_dssp             TTTEEEEEEEETTEEEEEEESSSSCEECC---SSCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTT
T ss_pred             cCCcEEEEEeccceEEEEEEeCCEEEEEe---cccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecC
Confidence            44544444433499999888777655422   223322211 1111122221      1122355555543233333332


Q ss_pred             CC-CceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEe-cCCC--eEEEEECC
Q 038577          390 HT-NAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGT-LDSF--EIFVWSMK  465 (860)
Q Consensus       390 ~~-~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~--~i~v~d~~  465 (860)
                      .. -.|.+++.. +.+...+|+......+|-+..++..+....+.-..++.+    .+++++-.+ -.++  ...+-|+.
T Consensus       101 pk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI----~~d~I~G~g~~~g~~~sfF~adl~  175 (313)
T d2hu7a1         101 VKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDI----RGDLIAGLGFFGGGRVSLFTSNLS  175 (313)
T ss_dssp             SCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEE----ETTEEEEEEEEETTEEEEEEEETT
T ss_pred             CceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEec----cCCeEEEEeeecCCcceEEEEecc
Confidence            22 345555543 345677888888899999988877666655554334333    244443211 1111  34444554


Q ss_pred             CCceEEEecCcccCeEEEEEcCCCCEEEEEeC-CCc--EEEEEccCCcceeEEcc-------cCCCeEEEEEeeCCCEEE
Q 038577          466 TGRLLDILSGHEGPVHGLVFSPTNATLASSSW-DKT--VRLWNVFEGKGSVESFP-------HTHDVLTVVYRPDGRQLA  535 (860)
Q Consensus       466 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~  535 (860)
                      +|. ++.+....+.++....++..+. ++.-. -|.  ..-+|+++++....-.+       ....|+.+-+.|++++++
T Consensus       176 SG~-lri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~i  253 (313)
T d2hu7a1         176 SGG-LRVFDSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAV  253 (313)
T ss_dssp             TEE-EEEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEE
T ss_pred             cCC-EEEecCCCCcccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEE
Confidence            443 3445556677777778877765 33221 122  22447766652221111       345677788999999999


Q ss_pred             EEeCCCeEEEEeCCCCceeEEEec
Q 038577          536 CSTLDGQIHFWDPLNGELMYTIEG  559 (860)
Q Consensus       536 ~~~~dg~i~iwd~~~~~~~~~~~~  559 (860)
                      .+-.||.-.+|.  +|+.+...++
T Consensus       254 iakrdG~s~lF~--nGk~in~p~G  275 (313)
T d2hu7a1         254 VARREGRSAVFI--DGERVEAPQG  275 (313)
T ss_dssp             EEEETTEEEEEE--TTEEECCCSS
T ss_pred             EEecCCchheee--cceEecCCCC
Confidence            999999999997  5766655544

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=86.48  E-value=5.1  Score=36.12  Aligned_cols=205  Identities=15%  Similarity=0.103  Sum_probs=94.3

Q ss_pred             CCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEE
Q 038577          328 LGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLL  407 (860)
Q Consensus       328 ~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  407 (860)
                      +|.|..|-....-.+.........+..++.-.. ..++.  .||.+..|.....-...........+..++....  ..+
T Consensus        43 dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~-~~~al--~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~~--~~~  117 (273)
T d1jtdb_          43 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY-HSLAL--KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASY  117 (273)
T ss_dssp             TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSS-EEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEEETT--EEE
T ss_pred             CCEEEEEeCCCCCceeeeecccccceEEecCCC-ceeee--eeeeeeccCCCcceeeccccccccceeEEeeecc--ccc
Confidence            367766654432221111222334555554222 22332  4789999976432211111112233444443222  222


Q ss_pred             EEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcC
Q 038577          408 SASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSP  487 (860)
Q Consensus       408 s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~  487 (860)
                      . -.|+.+..|.-....... ........+..++-.  ....+ ...++ .++.|-................|..++...
T Consensus       118 ~-~~dg~v~~~g~~~~~~~~-~~~~~~~~v~~~~~~--~~~~~-~~~~g-~~~~~G~~~~g~~~~~~~~~~~v~~Is~G~  191 (273)
T d1jtdb_         118 A-LKDGKVIAWGDDSDGQTT-VPAEAQSGVTALDGG--VYTAL-AVKNG-GVIAWGDNYFGQTTVPAEAQSGVDDVAGGI  191 (273)
T ss_dssp             E-EETTEEEEEECCTTSTTS-CCGGGGSSEEEEEEC--SSEEE-EEETT-EEEEEECCTTSTTSCCGGGSSSEEEEEECS
T ss_pred             c-cccccceecccCCCCcee-eeccCCceEEEEecc--ceeee-eeccc-ceeEeecccCCcccccccccCCccceeccc
Confidence            2 247888888744322111 111112233333321  22222 33345 788886554322222222455687777643


Q ss_pred             CCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCC
Q 038577          488 TNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPL  549 (860)
Q Consensus       488 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  549 (860)
                      .  ..+.-. ||.|+-|=......+.........|..|+-... ..++.  .||.|..|--.
T Consensus       192 ~--h~~~l~-dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~~-~~~~l--~~g~v~~WG~~  247 (273)
T d1jtdb_         192 F--HSLALK-DGKVIAWGDNRYKQTTVPTEALSGVSAIASGEW-YSLAL--KNGKVIAWGSS  247 (273)
T ss_dssp             S--EEEEEE-TTEEEEEECCTTSTTCCCGGGGSSCCEEEECSS-CEEEE--ETTEEEEESTT
T ss_pred             e--eeEEEe-cCcEEEcCCCCCCccCCCccCCCCcEEEEeCcc-eEEEE--ECCEEEEECCC
Confidence            3  222223 799999965433223222333455777765433 33443  38999999543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=84.27  E-value=20  Score=34.84  Aligned_cols=57  Identities=19%  Similarity=0.251  Sum_probs=38.3

Q ss_pred             CCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEe------ecCCCcEEEEEEccCC
Q 038577          141 NDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLL------LGHRDSVVGCFFSVDK  201 (860)
Q Consensus       141 ~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~------~~h~~~i~~~~~~~~~  201 (860)
                      -..-++|+|.|||+++++--..|.|++++..++ ..   .....+      ..-.+....++|+|+-
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g-~~---~~i~~~~~~~~~~~ge~GLLgia~~Pdf   88 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESG-SV---KTVFQVPEIVNDADGQNGLLGFAFHPDF   88 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTC-CE---EEEEECTTCCCCTTSSCSEEEEEECTTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCC-cE---eecccCCccccccCCCCceeeEEeCCCC
Confidence            456789999999998777645789999887665 11   111111      1234567889999863

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=80.44  E-value=15  Score=30.72  Aligned_cols=257  Identities=17%  Similarity=0.215  Sum_probs=135.1

Q ss_pred             CCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCC-CEEEEEEc-----cCCcEEEEEccCceEEEEecCc
Q 038577          275 GLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELG-NWLVFGCA-----KLGQLLVWEWRSESYILKQQGH  348 (860)
Q Consensus       275 ~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~-----~~g~i~v~d~~~~~~~~~~~~~  348 (860)
                      +.+.+++++..|.+.++-+..++.....+   .+|....--..+ ..+.++-.     ....+.+-++.......++...
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~sp  101 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV  101 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTS
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEec---ccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCC
Confidence            44578889999999999887766554322   222222111111 22222211     1123444455422222333332


Q ss_pred             c-cCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE--eec-------CCCceEEEEEee-CCCEEEEEeC-CCcEE
Q 038577          349 Y-FDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVT--FTE-------HTNAVTALHFMA-NNHSLLSASL-DGTVR  416 (860)
Q Consensus       349 ~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~-------~~~~v~~i~~~~-~~~~l~s~~~-dg~i~  416 (860)
                      . -.|.++++. +.+..++|+......+|-++.|+....  +.+       ...-|..+.+.. +.+-+.++.- .|.++
T Consensus       102 k~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lr  180 (313)
T d2hu7a1         102 KPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR  180 (313)
T ss_dssp             CSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEE
T ss_pred             ceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEE
Confidence            2 446666654 445677888888888998887765432  211       223344444432 2233555554 66777


Q ss_pred             EEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCC--eEEEEECCCCceEEE-ecC------cccCeEEEEEcC
Q 038577          417 AWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSF--EIFVWSMKTGRLLDI-LSG------HEGPVHGLVFSP  487 (860)
Q Consensus       417 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~i~v~d~~~~~~~~~-~~~------h~~~v~~l~~s~  487 (860)
                      +++...+            .+......+..+. +++...-+  ...-+|+++++.... +..      ..-.|+-+-+.|
T Consensus       181 i~tpkeG------------S~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~P  247 (313)
T d2hu7a1         181 VFDSGEG------------SFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLP  247 (313)
T ss_dssp             EECCSSE------------EEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECT
T ss_pred             EecCCCC------------cccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCC
Confidence            7665433            4555556666555 33332211  333568887765443 221      123466677999


Q ss_pred             CCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEE-EeCCCeEEEEeCCCCcee
Q 038577          488 TNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLAC-STLDGQIHFWDPLNGELM  554 (860)
Q Consensus       488 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~  554 (860)
                      ++++++.+-.||.-++|.  +++.+   ....+.+..+..- ++....+ .+-..--+|..+.+|+++
T Consensus       248 dd~L~iiakrdG~s~lF~--nGk~i---n~p~G~~~gat~i-~~~iyfshsSL~tP~kI~~~~~~~~~  309 (313)
T d2hu7a1         248 DGRLAVVARREGRSAVFI--DGERV---EAPQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGEPL  309 (313)
T ss_dssp             TSCEEEEEEETTEEEEEE--TTEEE---CCCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEE
T ss_pred             CCcEEEEEecCCchheee--cceEe---cCCCCcccceEEE-CCEEEEeecccCCCceeEEcCCCCcc
Confidence            999999999999999987  33322   2233334433333 3333332 233334566666666654