Citrus Sinensis ID: 038692

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440---
MPDLANLALSSSSSSLTLTRCASSLKPLAPPHSATESPGSDSAVVKTLALTGEEENVCANGNGHSVRVMKRCRGAKNISGLEDHVAAWVKKKMELGVPQSNCSLPFLVGAKKMIECRACHRFIYHGEEVFCSVRGCGGVYHFICVKERLGISNPRNFKCPQHACFICRQRLQWRCVRCTIASHDKCAPWPDRVIHLKDQPGRAVCWRHPAKWLLDKQEVFCRLPLPYADEEFKIDLTWKDLMENKVGPPPVQYISCSKACHCSETCNNRPFRKEKKIKIVKTEFCGWGVEAAEPINKGEFIIEYIGEVIDDALCEQRLWDMKYRGVQNFYMCEIRKDFTIDATFKGNFSRFLNHSCDPNCILEKWQVEGETRVGVFAARSIKAGEPLTYDYRFVQFGPEVKCYCGASSCQGYLGTKRKIGKLELCWGSKRKRSSTACLAIITL
cccccccccccccccEEEEccccccccccccccccccccccHHHHHHcccccccccEEccccccccEEEEccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccEEEccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccEEEEcccccEEEEEccccccccEEEEcccEEccHHHHHHHHHHHHHccccEEEEEEEccccEEEcccccccccccccccccccEEEEEEEccEEEEEEEEcccccccccEEEccccccccccccccccccccEEccccccccccHHHccccccccccccccccccc
ccccHHcccccccccEEEEccccccccccccHHHccccccccccccccccccccHHEEEccccEEEEEccccccccccccHHHHHHHHHHHHHHccccccccEccccccccHHHHHHHHcccccccccEEEEEcccccEEEHHHHHHHHcccccccccccccEEEEEcccEEEEEEEEEEEccccccccccEEEEEEcccccEEEEEcccccccccccEEEccccccccccccccHccccccccccccccEEEEEEccccccccccccccccEcccEEEEEEcccccEEEEccccccccEEEEEEEEEccHHHHHHHHHHHHHccccEEEEEEEcccEEEEccccccccHEEEcccccccEEEEEEEcccEEEEEEEEEccccccEEEEEEEEEEcccccccccccccccccccccccccHHHHccccHHccccccEEEEEcc
mpdlanlalssssssltltrcasslkplapphsatespgsdsAVVKTLALtgeeenvcangngHSVRVMKRCrgaknisgLEDHVAAWVKKKMelgvpqsncslpflVGAKKMIECRACHrfiyhgeevfcsvrgcggvyHFICVKerlgisnprnfkcpqhacfICRQRLQWRCvrctiashdkcapwpdrvihlkdqpgravcwrhpakwlldkqevfcrlplpyadeefkiDLTWKdlmenkvgpppvqyiscskachcsetcnnrpfrkekkiKIVKTEFcgwgveaaepinkgEFIIEYIGEVIDDALCEQRLWDMKYRGVQNFYMCEIrkdftidatfkgnfsrflnhscdpncilekwqvegetRVGVFAArsikagepltydyrfvqfgpevkcycgasscqgylgtkrkigklelcwgskrkrssTACLAIITL
MPDLANLALSSSSSSLTLTRCASSLKPLAPphsatespgsdsAVVKTLALTgeeenvcangnghsVRVMKRCRGAKNISGLEDHVAAWVKKKMELGVPQSNCSLPFLVGAKKMIECRACHRFIYHGEEVFCSVRGCGGVYHFICVKERLGISNPRNFKCPQHACFICRQRLQWRCVRCTIAshdkcapwpdRVIHLKDQPGRAVCWRHPAKWLLDKQEVFCRLPLPYADEEFKIDLTWKDLMENKVGPPPVQYISCSKACHCsetcnnrpfrkekkikiVKTEFCGWGVEAAEPINKGEFIIEYIGEVIDDALCEQRLWDMKYRGVQNFYMCEIRKDFTIDATFKGNFSRFLNHSCDPNCILEKWQVEGETRVGVFAarsikagepltYDYRFVQFGPEVKCYCGAsscqgylgtkrKIGKlelcwgskrkrsstaclaiitl
MPDlanlalssssssltltrcasslKPLAPPHSATESPGSDSAVVKTLALTGEEENVCANGNGHSVRVMKRCRGAKNISGLEDHVAAWVKKKMELGVPQSNCSLPFLVGAKKMIECRACHRFIYHGEEVFCSVRGCGGVYHFICVKERLGISNPRNFKCPQHACFICRQRLQWRCVRCTIASHDKCAPWPDRVIHLKDQPGRAVCWRHPAKWLLDKQEVFCRLPLPYADEEFKIDLTWKDLMENKVGPPPVQYISCSKACHCSETCNNRPFRKEKKIKIVKTEFCGWGVEAAEPINKGEFIIEYIGEVIDDALCEQRLWDMKYRGVQNFYMCEIRKDFTIDATFKGNFSRFLNHSCDPNCILEKWQVEGETRVGVFAARSIKAGEPLTYDYRFVQFGPEVKCYCGASSCQGYLGTKRKIGKLELCWGSKRKRSSTACLAIITL
**********************************************TLALTGEEENVCANGNGHSVRVMKRCRGAKNISGLEDHVAAWVKKKMELGVPQSNCSLPFLVGAKKMIECRACHRFIYHGEEVFCSVRGCGGVYHFICVKERLGISNPRNFKCPQHACFICRQRLQWRCVRCTIASHDKCAPWPDRVIHLKDQPGRAVCWRHPAKWLLDKQEVFCRLPLPYADEEFKIDLTWKDLMENKVGPPPVQYISCSKACHCSETCNNRPFRKEKKIKIVKTEFCGWGVEAAEPINKGEFIIEYIGEVIDDALCEQRLWDMKYRGVQNFYMCEIRKDFTIDATFKGNFSRFLNHSCDPNCILEKWQVEGETRVGVFAARSIKAGEPLTYDYRFVQFGPEVKCYCGASSCQGYLGTKRKIGKLELCWGSKRKRSSTACLAII**
************************************************************************************VAAWVKKKMELGVPQSNCSLPFLVGAKKMIECRACHRFIYHGEEVFCSVRGCGGVYHFICVKERLGISNPRNFKCPQHACFICRQRLQWRCVRCTIASHDKCAPWPDRVIHLKDQPGRAVCWRHPAKWLLDKQEVFCRLPLPYADEEFKIDLTWKDLMENKVGPPPVQYISCSKACHCSETCNNRPFRKEKKIKIVKTEFCGWGVEAAEPINKGEFIIEYIGEVIDDALCEQRLWDMKYRGVQNFYMCEIRKDFTIDATFKGNFSRFLNHSCDPNCILEKWQVEGETRVGVFAARSIKAGEPLTYDYRFVQFGPEVKCYCGASSCQGYLG**********************CLAIITL
******************TRCASSLKP****************VVKTLALTGEEENVCANGNGHSVRVMKRCRGAKNISGLEDHVAAWVKKKMELGVPQSNCSLPFLVGAKKMIECRACHRFIYHGEEVFCSVRGCGGVYHFICVKERLGISNPRNFKCPQHACFICRQRLQWRCVRCTIASHDKCAPWPDRVIHLKDQPGRAVCWRHPAKWLLDKQEVFCRLPLPYADEEFKIDLTWKDLMENKVGPPPVQYISCSKACHCSETCNNRPFRKEKKIKIVKTEFCGWGVEAAEPINKGEFIIEYIGEVIDDALCEQRLWDMKYRGVQNFYMCEIRKDFTIDATFKGNFSRFLNHSCDPNCILEKWQVEGETRVGVFAARSIKAGEPLTYDYRFVQFGPEVKCYCGASSCQGYLGTKRKIGKLELCWGSKRKRSSTACLAIITL
*********SSSSSSLTLTRCASSLKPLAPPHSAT****SD***VKTLALTGEEENVCANGNGHSVRVMKRCRGAKNISGLEDHVAAWVKKKMELGVPQSNCSLPFLVGAKKMIECRACHRFIYHGEEVFCSVRGCGGVYHFICVKERLGISNPRNFKCPQHACFICRQRLQWRCVRCTIASHDKCAPWPDRVIHLKDQPGRAVCWRHPAKWLLDKQEVFCRLPLPYADEEFKIDLTWKDLMENKVGPPPVQYISCSKACHCSETCNNRPFRKEKKIKIVKTEFCGWGVEAAEPINKGEFIIEYIGEVIDDALCEQRLWDMKYRGVQNFYMCEIRKDFTIDATFKGNFSRFLNHSCDPNCILEKWQVEGETRVGVFAARSIKAGEPLTYDYRFVQFGPEVKCYCGASSCQGYLGT****************RSSTACLAIITL
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPDLANLALSSSSSSLTLTRCASSLKPLAPPHSATESPGSDSAVVKTLALTGEEENVCANGNGHSVRVMKRCRGAKNISGLEDHVAAWVKKKMELGVPQSNCSLPFLVGAKKMIECRACHRFIYHGEEVFCSVRGCGGVYHFICVKERLGISNPRNFKCPQHACFICRQRLQWRCVRCTIASHDKCAPWPDRVIHLKDQPGRAVCWRHPAKWLLDKQEVFCRLPLPYADEEFKIDLTWKDLMENKVGPPPVQYISCSKACHCSETCNNRPFRKEKKIKIVKTEFCGWGVEAAEPINKGEFIIEYIGEVIDDALCEQRLWDMKYRGVQNFYMCEIRKDFTIDATFKGNFSRFLNHSCDPNCILEKWQVEGETRVGVFAARSIKAGEPLTYDYRFVQFGPEVKCYCGASSCQGYLGTKRKIGKLELCWGSKRKRSSTACLAIITL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query443 2.2.26 [Sep-21-2011]
Q949T8497 Histone-lysine N-methyltr yes no 0.966 0.861 0.565 1e-148
Q945S8363 Histone-lysine N-methyltr no no 0.363 0.443 0.551 3e-51
Q9M1X9352 Putative histone-lysine N no no 0.336 0.423 0.569 5e-48
O96028 1365 Histone-lysine N-methyltr yes no 0.365 0.118 0.466 1e-34
Q9BYW2 2564 Histone-lysine N-methyltr no no 0.406 0.070 0.382 2e-34
Q9BZ95 1437 Histone-lysine N-methyltr no no 0.379 0.116 0.438 2e-34
Q8BVE8 1365 Histone-lysine N-methyltr no no 0.365 0.118 0.466 2e-34
Q6P2L6 1439 Histone-lysine N-methyltr no no 0.376 0.116 0.435 7e-34
Q59XV0 844 Histone-lysine N-methyltr N/A no 0.363 0.190 0.402 2e-33
Q2LAE1 1759 Histone-lysine N-methyltr no no 0.352 0.088 0.418 5e-33
>sp|Q949T8|ASHR3_ARATH Histone-lysine N-methyltransferase ASHR3 OS=Arabidopsis thaliana GN=ASHR3 PE=1 SV=1 Back     alignment and function desciption
 Score =  524 bits (1350), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 276/488 (56%), Positives = 326/488 (66%), Gaps = 60/488 (12%)

Query: 1   MPDLANLALSSSSSSLTLTRCASSLKPLAPPHSA--TESPGSDSAVV--KTLALTGEEEN 56
           M DL N+++S+S   + LT C S L   + P  A    SP + +     K L +   EE 
Sbjct: 1   MLDLGNMSMSAS---VALTCCPSFLPAASGPELAKSINSPENLAGECNGKHLPMIPPEEE 57

Query: 57  V----CANGNGHSVRVMKRCRGAKNISGLEDHVAAWVKKKMELGVPQSNCSLPFLVGAKK 112
           V     ANG     R        K    L+DHV  WVK+++  GV +S C LPFLVGAKK
Sbjct: 58  VKDIKIANGVTAFTRKQNPSDRVKKGFVLDDHVKDWVKRRVASGVSESTCFLPFLVGAKK 117

Query: 113 MIECRACHRFIYHGEEVFCSVRGCGGVYHFICVKERLGISNPRNFKCPQHACFICRQRLQ 172
           M++C  CH+ +Y GE++ CSVRGC G YH +C KE LG S    FKCPQH CF+C+QR Q
Sbjct: 118 MVDCLVCHKPVYPGEDLSCSVRGCQGAYHSLCAKESLGFSKSSKFKCPQHECFVCKQRTQ 177

Query: 173 WRCVRCTIASHDKCAPWPDRVIHLKDQPGRAVCWRHPAKWLLDK---------QEVFCRL 223
           WRCV+C +A+HDK +PW   ++HLKDQPGRAVCWRHP  W LD          +EVFC+L
Sbjct: 178 WRCVKCPMAAHDKHSPWSKEILHLKDQPGRAVCWRHPTDWRLDTKHAVAQSEIEEVFCQL 237

Query: 224 PLPYADEEFKIDLTWKDLMENKVGPPP--------------------------------- 250
           PLPY +EEFKIDL WKD +  K  PP                                  
Sbjct: 238 PLPYVEEEFKIDLAWKDSVV-KEDPPSYVHIRRNIYLVKKKRDNANDGVGCTNCGPNCDR 296

Query: 251 -----VQYISCSKACHCSETCNNRPFRKEKKIKIVKTEFCGWGVEAAEPINKGEFIIEYI 305
                VQ ISCSK C C E+C NRPFRKEKKIKIVKTE CGWGVEAAE INK +FI+EYI
Sbjct: 297 SCVCRVQCISCSKGCSCPESCGNRPFRKEKKIKIVKTEHCGWGVEAAESINKEDFIVEYI 356

Query: 306 GEVIDDALCEQRLWDMKYRGVQNFYMCEIRKDFTIDATFKGNFSRFLNHSCDPNCILEKW 365
           GEVI DA CEQRLWDMK++G+++FYMCEI+KDFTIDATFKGN SRFLNHSC+PNC+LEKW
Sbjct: 357 GEVISDAQCEQRLWDMKHKGMKDFYMCEIQKDFTIDATFKGNASRFLNHSCNPNCVLEKW 416

Query: 366 QVEGETRVGVFAARSIKAGEPLTYDYRFVQFGPEVKCYCGASSCQGYLGTKRKIGK-LEL 424
           QVEGETRVGVFAAR I+AGEPLTYDYRFVQFGPEVKC CG+ +CQGYLGTKRK    L +
Sbjct: 417 QVEGETRVGVFAARQIEAGEPLTYDYRFVQFGPEVKCNCGSENCQGYLGTKRKEPNCLVV 476

Query: 425 CWGSKRKR 432
            WG+KR+R
Sbjct: 477 SWGAKRRR 484
Histone methyltransferase (By similarity). Involved in stamen development.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3
>sp|Q945S8|ASHH3_ARATH Histone-lysine N-methyltransferase ASHH3 OS=Arabidopsis thaliana GN=ASHH3 PE=2 SV=2 Back     alignment and function description
>sp|Q9M1X9|ASHH4_ARATH Putative histone-lysine N-methyltransferase ASHH4 OS=Arabidopsis thaliana GN=ASHH4 PE=3 SV=1 Back     alignment and function description
>sp|O96028|NSD2_HUMAN Histone-lysine N-methyltransferase NSD2 OS=Homo sapiens GN=WHSC1 PE=1 SV=1 Back     alignment and function description
>sp|Q9BYW2|SETD2_HUMAN Histone-lysine N-methyltransferase SETD2 OS=Homo sapiens GN=SETD2 PE=1 SV=3 Back     alignment and function description
>sp|Q9BZ95|NSD3_HUMAN Histone-lysine N-methyltransferase NSD3 OS=Homo sapiens GN=WHSC1L1 PE=1 SV=1 Back     alignment and function description
>sp|Q8BVE8|NSD2_MOUSE Histone-lysine N-methyltransferase NSD2 OS=Mus musculus GN=Whsc1 PE=1 SV=2 Back     alignment and function description
>sp|Q6P2L6|NSD3_MOUSE Histone-lysine N-methyltransferase NSD3 OS=Mus musculus GN=Whsc1l1 PE=1 SV=2 Back     alignment and function description
>sp|Q59XV0|SET2_CANAL Histone-lysine N-methyltransferase, H3 lysine-36 specific OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SET2 PE=3 SV=1 Back     alignment and function description
>sp|Q2LAE1|ASHH2_ARATH Histone-lysine N-methyltransferase ASHH2 OS=Arabidopsis thaliana GN=ASHH2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query443
255574954500 set domain protein, putative [Ricinus co 0.981 0.87 0.619 1e-172
224143888516 SET domain protein [Populus trichocarpa] 0.862 0.740 0.668 1e-167
449457959502 PREDICTED: histone-lysine N-methyltransf 0.988 0.872 0.587 1e-163
225445763494 PREDICTED: histone-lysine N-methyltransf 0.986 0.884 0.594 1e-157
356514491459 PREDICTED: histone-lysine N-methyltransf 0.925 0.893 0.584 1e-150
297802948497 SET domain-containing protein [Arabidops 0.932 0.830 0.552 1e-147
18417683497 histone-lysine N-methyltransferase ASHR3 0.966 0.861 0.565 1e-146
2980780477 putative protein [Arabidopsis thaliana] 0.968 0.899 0.555 1e-133
449530608285 PREDICTED: histone-lysine N-methyltransf 0.514 0.8 0.675 2e-98
357142828466 PREDICTED: LOW QUALITY PROTEIN: histone- 0.706 0.671 0.493 3e-96
>gi|255574954|ref|XP_002528383.1| set domain protein, putative [Ricinus communis] gi|223532171|gb|EEF33976.1| set domain protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  609 bits (1571), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 312/504 (61%), Positives = 355/504 (70%), Gaps = 69/504 (13%)

Query: 1   MPDLANLALSSSSSSLTLTRCASSLKPLAPPHSATESPGSDSAV-------VKTLALT-G 52
           MPDL N+       S+TLTRC+S      PP    ++    + +       VKTL     
Sbjct: 1   MPDLGNI-------SITLTRCSSLKPLSPPPPLNLDAQSDSTTIHSLCSDSVKTLVKDCN 53

Query: 53  EEENVCANG------------NGHSVRVMKRCRGAKNISG----LEDHVAAWVKKKMELG 96
            ++N+                N  S+RV+++ R           L+D+V  W +KKM+ G
Sbjct: 54  WDQNLLLPIPIPTPIPIEERCNDRSIRVLRKKRKKGGGGANGKCLDDYVRVWAQKKMDSG 113

Query: 97  VPQSNCSLPFLVGAKKMIECRACHRFIYHGEEVFCSVRGCGGVYHFICVKERLGISNPRN 156
           V  S C LPFLV +KK+ EC  CHR IY GEEV CSVR CGGV+HFICVKE   +SNP+ 
Sbjct: 114 VSNSRCFLPFLVSSKKIAECLVCHRLIYPGEEVLCSVRNCGGVFHFICVKETFHVSNPKK 173

Query: 157 FKCPQHACFICRQRLQWRCVRCTIASHDKCAPWPDRVIHLKDQPGRAVCWRHPAKWLLDK 216
           FKCPQHACF+C+Q+  WRCVRC +ASHD+C PWPD+VIHL D P RAVCWRHP  WLLDK
Sbjct: 174 FKCPQHACFVCKQKFDWRCVRCLMASHDRCGPWPDKVIHLIDPPRRAVCWRHPTNWLLDK 233

Query: 217 QEVFCRLPLPYADEEFKIDLTWKDLMENKVGPPP-------------------------- 250
           +EVF RLPLPY +EEFKID TWK LMENK+ PPP                          
Sbjct: 234 KEVFSRLPLPYVEEEFKIDATWKGLMENKLEPPPYVHIRRNVYLVKKKRDDVDNDVGCTS 293

Query: 251 ------------VQYISCSKACHCSETCNNRPFRKEKKIKIVKTEFCGWGVEAAEPINKG 298
                       VQ ISCS+ACHCSE C NRPFRKEKKIKIVKTEFCGWGVE  EPINKG
Sbjct: 294 CSSSCCEDCVCRVQCISCSRACHCSENCTNRPFRKEKKIKIVKTEFCGWGVETVEPINKG 353

Query: 299 EFIIEYIGEVIDDALCEQRLWDMKYRGVQNFYMCEIRKDFTIDATFKGNFSRFLNHSCDP 358
           +FIIEYIGEVIDDA+CEQRLWDMKY+GVQNFYMCEIRKDFTIDATFKGN SRFLNHSCDP
Sbjct: 354 DFIIEYIGEVIDDAVCEQRLWDMKYKGVQNFYMCEIRKDFTIDATFKGNSSRFLNHSCDP 413

Query: 359 NCILEKWQVEGETRVGVFAARSIKAGEPLTYDYRFVQFGPEVKCYCGASSCQGYLGTKRK 418
           NCILEKWQVEGETRVGVFAARSIK GEPLTYDYRFVQFGPEV+C+CGA +C GYLGTKRK
Sbjct: 414 NCILEKWQVEGETRVGVFAARSIKVGEPLTYDYRFVQFGPEVRCHCGAPNCHGYLGTKRK 473

Query: 419 IGKLELCWGSKRKRSSTACLAIIT 442
           I KL +CWG+KR+RSSTACLAI+T
Sbjct: 474 ICKLNICWGAKRRRSSTACLAIVT 497

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224143888|ref|XP_002325110.1| SET domain protein [Populus trichocarpa] gi|222866544|gb|EEF03675.1| SET domain protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449457959|ref|XP_004146715.1| PREDICTED: histone-lysine N-methyltransferase ASHR3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225445763|ref|XP_002272781.1| PREDICTED: histone-lysine N-methyltransferase ASHR3 [Vitis vinifera] gi|297743704|emb|CBI36587.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356514491|ref|XP_003525939.1| PREDICTED: histone-lysine N-methyltransferase ASHR3-like [Glycine max] Back     alignment and taxonomy information
>gi|297802948|ref|XP_002869358.1| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297315194|gb|EFH45617.1| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18417683|ref|NP_567859.1| histone-lysine N-methyltransferase ASHR3 [Arabidopsis thaliana] gi|75164864|sp|Q949T8.1|ASHR3_ARATH RecName: Full=Histone-lysine N-methyltransferase ASHR3; AltName: Full=ASH1-related protein 3; AltName: Full=Protein SET DOMAIN GROUP 4; AltName: Full=Protein stamen loss gi|15292921|gb|AAK92831.1| unknown protein [Arabidopsis thaliana] gi|20465681|gb|AAM20309.1| unknown protein [Arabidopsis thaliana] gi|56201422|dbj|BAD72877.1| stamen loss [Arabidopsis thaliana] gi|332660421|gb|AEE85821.1| histone-lysine N-methyltransferase ASHR3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|2980780|emb|CAA18207.1| putative protein [Arabidopsis thaliana] gi|7269987|emb|CAB79804.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449530608|ref|XP_004172286.1| PREDICTED: histone-lysine N-methyltransferase ASHR3-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|357142828|ref|XP_003572707.1| PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ASHR3-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query443
TAIR|locus:2126714497 SDG4 "SET domain group 4" [Ara 0.410 0.366 0.797 1.4e-144
TAIR|locus:2051769363 ASHH3 "histone-lysine N-methyl 0.370 0.451 0.584 1.3e-54
TAIR|locus:2080462352 ASHH4 "histone-lysine N-methyl 0.365 0.460 0.567 3.5e-52
ZFIN|ZDB-GENE-030131-2581 1461 whsc1 "Wolf-Hirschhorn syndrom 0.367 0.111 0.451 3.8e-48
UNIPROTKB|J9P6F3 850 WHSC1L1 "Uncharacterized prote 0.379 0.197 0.444 1.7e-46
UNIPROTKB|F1RZJ3 1437 WHSC1L1 "Uncharacterized prote 0.379 0.116 0.444 2.3e-45
UNIPROTKB|E1C765 1372 WHSC1 "Uncharacterized protein 0.363 0.117 0.457 3.1e-45
ZFIN|ZDB-GENE-050324-2 1521 whsc1l1 "Wolf-Hirschhorn syndr 0.379 0.110 0.403 4e-45
UNIPROTKB|Q9BZ95 1437 WHSC1L1 "Histone-lysine N-meth 0.379 0.116 0.438 4.7e-45
UNIPROTKB|J9NUG7 1359 WHSC1 "Uncharacterized protein 0.363 0.118 0.469 6e-45
TAIR|locus:2126714 SDG4 "SET domain group 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 813 (291.2 bits), Expect = 1.4e-144, Sum P(2) = 1.4e-144
 Identities = 146/183 (79%), Positives = 163/183 (89%)

Query:   251 VQYISCSKACHCSETCNNRPFRKEKKIKIVKTEFCGWGVEAAEPINKGEFIIEYIGEVID 310
             VQ ISCSK C C E+C NRPFRKEKKIKIVKTE CGWGVEAAE INK +FI+EYIGEVI 
Sbjct:   302 VQCISCSKGCSCPESCGNRPFRKEKKIKIVKTEHCGWGVEAAESINKEDFIVEYIGEVIS 361

Query:   311 DALCEQRLWDMKYRGVQNFYMCEIRKDFTIDATFKGNFSRFLNHSCDPNCILEKWQVEGE 370
             DA CEQRLWDMK++G+++FYMCEI+KDFTIDATFKGN SRFLNHSC+PNC+LEKWQVEGE
Sbjct:   362 DAQCEQRLWDMKHKGMKDFYMCEIQKDFTIDATFKGNASRFLNHSCNPNCVLEKWQVEGE 421

Query:   371 TRVGVFAARSIKAGEPLTYDYRFVQFGPEVKCYCGASSCQGYLGTKRKIGK-LELCWGSK 429
             TRVGVFAAR I+AGEPLTYDYRFVQFGPEVKC CG+ +CQGYLGTKRK    L + WG+K
Sbjct:   422 TRVGVFAARQIEAGEPLTYDYRFVQFGPEVKCNCGSENCQGYLGTKRKEPNCLVVSWGAK 481

Query:   430 RKR 432
             R+R
Sbjct:   482 RRR 484
GO:0005634 "nucleus" evidence=ISM;IEA;IDA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA
GO:0042054 "histone methyltransferase activity" evidence=IDA
GO:0000785 "chromatin" evidence=IDA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0016458 "gene silencing" evidence=RCA
GO:0034968 "histone lysine methylation" evidence=RCA
TAIR|locus:2051769 ASHH3 "histone-lysine N-methyltransferase ASHH3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080462 ASHH4 "histone-lysine N-methyltransferase ASHH4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-2581 whsc1 "Wolf-Hirschhorn syndrome candidate 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|J9P6F3 WHSC1L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RZJ3 WHSC1L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1C765 WHSC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050324-2 whsc1l1 "Wolf-Hirschhorn syndrome candidate 1-like 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BZ95 WHSC1L1 "Histone-lysine N-methyltransferase NSD3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9NUG7 WHSC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q949T8ASHR3_ARATH2, ., 1, ., 1, ., 4, 30.56550.96610.8611yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.1.430.946
3rd Layer2.1.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
smart00317124 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest 5e-47
pfam00856113 pfam00856, SET, SET domain 8e-34
COG2940480 COG2940, COG2940, Proteins containing SET domain [ 8e-19
>gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information 
 Score =  157 bits (399), Expect = 5e-47
 Identities = 56/124 (45%), Positives = 73/124 (58%)

Query: 275 KKIKIVKTEFCGWGVEAAEPINKGEFIIEYIGEVIDDALCEQRLWDMKYRGVQNFYMCEI 334
            K+++ K+   GWGV A E I KGEFI EY+GE+I     E+R       G + FY+ +I
Sbjct: 1   NKLEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERPKAYDTDGAKAFYLFDI 60

Query: 335 RKDFTIDATFKGNFSRFLNHSCDPNCILEKWQVEGETRVGVFAARSIKAGEPLTYDYRFV 394
             D  IDA  KGN +RF+NHSC+PNC L   +V G+ R+ +FA R IK GE LT DY   
Sbjct: 61  DSDLCIDARRKGNLARFINHSCEPNCELLFVEVNGDDRIVIFALRDIKPGEELTIDYGSD 120

Query: 395 QFGP 398
               
Sbjct: 121 YANE 124

Putative methyl transferase, based on outlier plant homologues. Length = 124
>gnl|CDD|216155 pfam00856, SET, SET domain Back     alignment and domain information
>gnl|CDD|225491 COG2940, COG2940, Proteins containing SET domain [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 443
KOG4442 729 consensus Clathrin coat binding protein/Huntingtin 100.0
KOG10801005 consensus Histone H3 (Lys4) methyltransferase comp 99.97
KOG1082364 consensus Histone H3 (Lys9) methyltransferase SUV3 99.97
smart00317116 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) 99.92
KOG1079739 consensus Transcriptional repressor EZH1 [Transcri 99.89
KOG10831306 consensus Putative transcription factor ASH1/LIN-5 99.86
KOG1085392 consensus Predicted methyltransferase (contains a 99.78
KOG11411262 consensus Predicted histone methyl transferase [Ch 99.78
KOG1081463 consensus Transcription factor NSD1 and related SE 99.66
COG2940480 Proteins containing SET domain [General function p 99.64
PF00856162 SET: SET domain; InterPro: IPR001214 The SET domai 99.61
KOG2589 453 consensus Histone tail methylase [Chromatin struct 99.21
KOG2461 396 consensus Transcription factor BLIMP-1/PRDI-BF1, c 98.28
KOG1141 1262 consensus Predicted histone methyl transferase [Ch 97.89
smart0057051 AWS associated with SET domains. subdomain of PRES 96.5
smart0050826 PostSET Cysteine-rich motif following a subset of 95.85
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 95.17
KOG1081 463 consensus Transcription factor NSD1 and related SE 94.62
PF1377190 zf-HC5HC2H: PHD-like zinc-binding domain 94.59
KOG4443 694 consensus Putative transcription factor HALR/MLL3, 93.9
PF13832110 zf-HC5HC2H_2: PHD-zinc-finger like domain 91.5
KOG2084 482 consensus Predicted histone tail methylase contain 89.96
PF05033103 Pre-SET: Pre-SET motif; InterPro: IPR007728 This r 89.28
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 87.14
KOG1337 472 consensus N-methyltransferase [General function pr 81.9
COG5141669 PHD zinc finger-containing protein [General functi 81.76
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-46  Score=396.83  Aligned_cols=170  Identities=44%  Similarity=0.884  Sum_probs=163.5

Q ss_pred             eeEEecCC-CCC-CCCCCCCCccccCc--eEEEEEcCCCccEEEeccccCCCcEEEEEcceecCHHHHHHHHHHhhhcCc
Q 038692          251 VQYISCSK-ACH-CSETCNNRPFRKEK--KIKIVKTEFCGWGVEAAEPINKGEFIIEYIGEVIDDALCEQRLWDMKYRGV  326 (443)
Q Consensus       251 ~~~~EC~~-~C~-C~~~C~Nr~~q~~~--kl~V~~s~~kG~GLfA~e~I~kGt~I~eY~GeVi~~~e~~~r~~~~~~~~~  326 (443)
                      +.++||++ .|+ |+.+|.|+.||+.+  +++||.|+++||||+|.++|++|+||+||.||||+..+++.|+..|...+.
T Consensus        92 ~t~iECs~~~C~~cg~~C~NQRFQkkqyA~vevF~Te~KG~GLRA~~dI~~g~FI~EY~GEVI~~~Ef~kR~~~Y~~d~~  171 (729)
T KOG4442|consen   92 MTSIECSDRECPRCGVYCKNQRFQKKQYAKVEVFLTEKKGCGLRAEEDIPKGQFILEYIGEVIEEKEFEKRVKRYAKDGI  171 (729)
T ss_pred             hhhcccCCccCCCccccccchhhhhhccCceeEEEecCcccceeeccccCCCcEEeeeccccccHHHHHHHHHHHHhcCC
Confidence            45689998 999 99999999999975  799999999999999999999999999999999999999999999999999


Q ss_pred             cceeeeeeceeEEEecccccCccccccCCCCCceeEEEEEECCeeEEEEEEccCCCCCCcEeEecCCCCCCC-CeeeecC
Q 038692          327 QNFYMCEIRKDFTIDATFKGNFSRFLNHSCDPNCILEKWQVEGETRVGVFAARSIKAGEPLTYDYRFVQFGP-EVKCYCG  405 (443)
Q Consensus       327 ~~~y~~~~~~~~~IDa~~~GN~aRFINHSC~PNc~~~~~~v~g~~ri~l~A~RdI~aGEELT~DYg~~~~~~-~~~C~CG  405 (443)
                      .+||+|.+..+++|||+.+||++|||||||+|||++++|.|.+..||+|||.|+|.+||||||||+++++|. .++|+||
T Consensus       172 kh~Yfm~L~~~e~IDAT~KGnlaRFiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf~rYGr~AQ~CyCg  251 (729)
T KOG4442|consen  172 KHYYFMALQGGEYIDATKKGNLARFINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQFDRYGRDAQPCYCG  251 (729)
T ss_pred             ceEEEEEecCCceecccccCcHHHhhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEecccccccccccccccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999986 4899999


Q ss_pred             CCCCccccCCccccc
Q 038692          406 ASSCQGYLGTKRKIG  420 (443)
Q Consensus       406 S~~Crg~L~~~~~~~  420 (443)
                      +++|+||||++++.+
T Consensus       252 eanC~G~IGgk~q~d  266 (729)
T KOG4442|consen  252 EANCRGWIGGKPQTD  266 (729)
T ss_pred             CcccccccCCCCccc
Confidence            999999999997764

>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription] Back     alignment and domain information
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription] Back     alignment and domain information
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription] Back     alignment and domain information
>COG2940 Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco Back     alignment and domain information
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription] Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>smart00570 AWS associated with SET domains Back     alignment and domain information
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription] Back     alignment and domain information
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain Back     alignment and domain information
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics] Back     alignment and domain information
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1337 consensus N-methyltransferase [General function prediction only] Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
4fmu_A278 Crystal Structure Of Methyltransferase Domain Of Hu 1e-34
3ooi_A232 Crystal Structure Of Human Histone-Lysine N-Methylt 2e-32
3ope_A222 Structural Basis Of Auto-Inhibitory Mechanism Of Hi 8e-28
2r3a_A300 Methyltransferase Domain Of Human Suppressor Of Var 5e-21
2o8j_A281 Human Euchromatic Histone Methyltransferase 2 Lengt 1e-20
3k5k_A283 Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazolin 1e-20
2w5y_A192 Binary Complex Of The Mixed Lineage Leukaemia (Mll1 3e-19
2igq_A285 Human Euchromatic Histone Methyltransferase 1 Lengt 3e-19
3hna_A287 Crystal Structure Of Catalytic Domain Of Human Euch 4e-19
3fpd_A261 G9a-Like Protein Lysine Methyltransferase Inhibitio 4e-19
3bo5_A290 Crystal Structure Of Methyltransferase Domain Of Hu 5e-19
4i51_A286 Methyltransferase Domain Of Human Euchromatic Histo 4e-18
1ml9_A302 Structure Of The Neurospora Set Domain Protein Dim- 2e-15
1mvh_A299 Structure Of The Set Domain Histone Lysine Methyltr 7e-15
4ij8_A165 Crystal Structure Of The Complex Of Setd8 With Sam 1e-10
1zkk_A167 Crystal Structure Of Hset8 In Ternary Complex With 4e-10
2bqz_A161 Crystal Structure Of A Ternary Complex Of The Human 6e-10
3f9z_A166 Structural Insights Into Lysine Multiple Methylatio 1e-09
3f9w_A166 Structural Insights Into Lysine Multiple Methylatio 1e-09
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set Domain- Containing Protein 2 Compound: Pr-Snf Length = 278 Back     alignment and structure 
Iteration: 1

 Score =  144 bits (362), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/183 (38%), Positives = 114/183 (62%), Gaps = 3/183 (1%)
Query: 254 ISCSKACHCSETCNNRPFRKEK--KIKIVKTEFCGWGVEAAEPINKGEFIIEYIGEVIDD 311
           I CS  C   + C+NR F++++   ++++ TE  GWG+ AA+ +    F++EY GEV+D 
Sbjct: 94  IECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDH 153
Query: 312 ALCEQRLWDMKYRGVQNFYMCEIRKDFTIDATFKGNFSRFLNHSCDPNCILEKWQVEGET 371
              + R+ +       ++Y   ++ D  IDAT KGN SRF+NHSC+PNC  +KW V G+ 
Sbjct: 154 KEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWTVNGQL 213
Query: 372 RVGVFAARSIKAGEPLTYDYRFVQFGPEV-KCYCGASSCQGYLGTKRKIGKLELCWGSKR 430
           RVG F  + + +G  LT+DY+F ++G E  KC+CG+++C+GYLG + ++         K+
Sbjct: 214 RVGFFTTKLVPSGSELTFDYQFQRYGKEAQKCFCGSANCRGYLGGENRVSIRAAGGKMKK 273
Query: 431 KRS 433
           +RS
Sbjct: 274 ERS 276
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine N-Methyltransferase Nsd1 Set Domain In Complex With S-Adenosyl-L-Methionine Length = 232 Back     alignment and structure
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone Methyltransferase Length = 222 Back     alignment and structure
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of Variegation 3-9 Homolog 2 Length = 300 Back     alignment and structure
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2 Length = 281 Back     alignment and structure
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A Potent Inhibitor Of Histone Lysine Methyltransferase, G9a Length = 283 Back     alignment and structure
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set Domain With The Cofactor Product S-Adenosylhomocysteine. Length = 192 Back     alignment and structure
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1 Length = 285 Back     alignment and structure
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic Histone Methyltransferase 1 In Complex With Sah And Mono- Methylated H3k9 Peptide Length = 287 Back     alignment and structure
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix- 01294 Length = 261 Back     alignment and structure
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Histone-Lysine N-Methyltransferase Setmar Length = 290 Back     alignment and structure
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone Methyltransferase 1, Mutant Y1211a Length = 286 Back     alignment and structure
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A Histone Lysine Methyltransferase Length = 302 Back     alignment and structure
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase Clr4 Length = 299 Back     alignment and structure
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam Length = 165 Back     alignment and structure
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4 Peptide (16-24) And Adohcy Length = 167 Back     alignment and structure
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human Histone Methyltransferase Pr-Set7 (Also Known As Set8) Length = 161 Back     alignment and structure
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set Domain Methyltransferases, Set8-Y245f H4-Lys20 ADOHCY Length = 166 Back     alignment and structure
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set Domain Methyltransferases, Set8-Y334f H4-Lys20 ADOHCY Length = 166 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 2e-77
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 1e-73
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 2e-71
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 3e-70
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 6e-62
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 5e-61
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 1e-58
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 2e-56
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 4e-56
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 1e-53
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 7e-36
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 9e-35
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 1e-31
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 3e-29
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 4e-17
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 2e-14
3db5_A151 PR domain zinc finger protein 4; methyltransferase 6e-12
3dal_A196 PR domain zinc finger protein 1; methyltransferase 1e-11
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 3e-11
3ray_A237 PR domain-containing protein 11; structural genomi 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
3qwp_A 429 SET and MYND domain-containing protein 3; SMYD3,SE 8e-04
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Length = 232 Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Length = 222 Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Length = 192 Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* Length = 166 Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Length = 299 Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Length = 290 Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Length = 300 Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Length = 302 Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Length = 287 Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119 Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Length = 273 Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261 Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Length = 247 Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Length = 149 Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Length = 170 Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Length = 151 Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Length = 196 Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Length = 152 Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Length = 237 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query443
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 100.0
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 100.0
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 100.0
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 100.0
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 100.0
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 100.0
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 100.0
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 100.0
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 100.0
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 99.97
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 99.94
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 99.93
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 99.92
1h3i_A293 Histone H3 lysine 4 specific methyltransferase; 2. 99.92
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 99.91
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 99.88
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 99.77
3db5_A151 PR domain zinc finger protein 4; methyltransferase 99.76
3dal_A196 PR domain zinc finger protein 1; methyltransferase 99.71
3ray_A237 PR domain-containing protein 11; structural genomi 99.62
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 99.49
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 98.76
3qwp_A 429 SET and MYND domain-containing protein 3; SMYD3,SE 98.76
3qww_A 433 SET and MYND domain-containing protein 2; methyltr 98.63
4gne_A107 Histone-lysine N-methyltransferase NSD3; zinc fing 98.48
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 97.95
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 97.27
3qxy_A 449 N-lysine methyltransferase SETD6; epigenetics, pro 96.88
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 96.72
2h21_A 440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 96.64
3smt_A 497 Histone-lysine N-methyltransferase SETD3; histone 96.04
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 93.0
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 91.8
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 90.42
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 90.03
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 89.35
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 89.14
2lq6_A87 Bromodomain-containing protein 1; PHD finger, meta 89.07
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 88.15
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 87.95
2lri_C66 Autoimmune regulator; Zn binding protein domain, a 87.68
2k16_A75 Transcription initiation factor TFIID subunit 3; p 87.1
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 86.91
2lv9_A98 Histone-lysine N-methyltransferase MLL5; zinc fing 86.48
3qww_A 433 SET and MYND domain-containing protein 2; methyltr 86.11
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 85.18
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 84.56
3qwp_A 429 SET and MYND domain-containing protein 3; SMYD3,SE 84.38
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 84.09
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 81.83
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 81.57
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 81.45
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Back     alignment and structure
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Back     alignment and structure
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Back     alignment and structure
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Back     alignment and structure
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 443
d2f69a2171 b.85.7.1 (A:194-364) Histone H3 K4-specific methyl 3e-36
d1ml9a_284 b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T 2e-31
d1mvha_269 b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S 5e-31
d2g46a1119 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth 4e-20
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171 Back     information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Histone H3 K4-specific methyltransferase SET7/9 catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (324), Expect = 3e-36
 Identities = 24/168 (14%), Positives = 54/168 (32%), Gaps = 8/168 (4%)

Query: 255 SCSKACHCSETCNNRPFRKEK-KIKIVKTEFCGWGVEAAEPINKGEFIIEYIGEVIDDAL 313
             + +C  +      P+  E+  +        G G+ +   +     +  Y G  I    
Sbjct: 2   KSTSSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQE 61

Query: 314 CEQRLWDM--KYRGVQNFYMCEIRKDFTIDATFKGNFSRFLNHSCDPNCILEKWQVEGET 371
            + R W +      +    + ++ + +   + +  +     NHS  PNCI + +      
Sbjct: 62  VDSRDWALNGNTLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFG 121

Query: 372 -RVGVFAARSIKAGEPLTYDYRFVQFGPEVKCYCGASSCQGYLGTKRK 418
               +   R+++A E LT  Y +                  +   + K
Sbjct: 122 PIKCIRTLRAVEADEELTVAYGYDHSP----PGKSGPEAPEWYQVELK 165
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284 Back     information, alignment and structure
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269 Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query443
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 100.0
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 100.0
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 99.92
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 99.9
d2h2ja2261 RuBisCo LSMT catalytic domain {Garden pea (Pisum s 98.82
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 94.43
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 94.12
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 89.28
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 84.93
d2d8ya135 Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]} 83.78
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 81.13
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Dim-5
species: Fungus (Neurospora crassa) [TaxId: 5141]

Probab=100.00  E-value=3.4e-38  Score=309.37  Aligned_cols=145  Identities=28%  Similarity=0.602  Sum_probs=124.8

Q ss_pred             EEecCCCCCCCCCCCCCccccCc--eEEEEEcCCCccEEEeccccCCCcEEEEEcceecCHHHHHHHHHHhhhcCcccee
Q 038692          253 YISCSKACHCSETCNNRPFRKEK--KIKIVKTEFCGWGVEAAEPINKGEFIIEYIGEVIDDALCEQRLWDMKYRGVQNFY  330 (443)
Q Consensus       253 ~~EC~~~C~C~~~C~Nr~~q~~~--kl~V~~s~~kG~GLfA~e~I~kGt~I~eY~GeVi~~~e~~~r~~~~~~~~~~~~y  330 (443)
                      +|||++.|+|+..|.||++|++.  +|+|++++.+||||||+++|++|+||+||.|++++..+++++...+......+.|
T Consensus       101 i~EC~~~C~C~~~C~Nr~~q~g~~~~lev~kt~~kG~Gv~a~~~I~kGt~I~eY~Gevi~~~ea~~~~~~~~~~~~~~~y  180 (284)
T d1ml9a_         101 IYECHQGCACSKDCPNRVVERGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIARRKDVY  180 (284)
T ss_dssp             EECCCTTCSSCTTCTTCHHHHCCCSCEEEEECSSSCEEEECSSCBCTTCEEEECCCEEECHHHHHHHHHHSCGGGCHHHH
T ss_pred             eeCCCCCCCcCCCCCCeeccCCCccCEEEEEcCCCceEEeeCCCcCCCCEEEEecCcccCHHHHHHHHHHHHhhccCCcc
Confidence            58999999999999999999874  6999999999999999999999999999999999999998887666555555556


Q ss_pred             eeeec--------------eeEEEecccccCccccccCCCCCceeEEEEEECC----eeEEEEEEccCCCCCCcEeEecC
Q 038692          331 MCEIR--------------KDFTIDATFKGNFSRFLNHSCDPNCILEKWQVEG----ETRVGVFAARSIKAGEPLTYDYR  392 (443)
Q Consensus       331 ~~~~~--------------~~~~IDa~~~GN~aRFINHSC~PNc~~~~~~v~g----~~ri~l~A~RdI~aGEELT~DYg  392 (443)
                      ++.++              ..++||++..||++|||||||+||+.+..+.+++    .++|+|||+|||++||||||||+
T Consensus       181 ~~~l~~~~~~~~~~~~~~~~~~~iDa~~~GN~aRfiNHSC~PN~~~~~v~~~~~~~~~~~i~~~A~rdI~~GEELt~dYg  260 (284)
T d1ml9a_         181 LFALDKFSDPDSLDPLLAGQPLEVDGEYMSGPTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYV  260 (284)
T ss_dssp             EEECCSSCCSSSSCHHHHSCCCEEECSSEECGGGGCEECSSCSEEEEEEESSGGGGGGCEEEEEESSCBCTTCEEEECTT
T ss_pred             ceecccccccccccccccCCceeEeeeeccchhheeeccccCCcceEEEEeccCCCCceEEEEEECCccCCCCEEEEecC
Confidence            55543              3468999999999999999999999998777653    37999999999999999999999


Q ss_pred             CCCCC
Q 038692          393 FVQFG  397 (443)
Q Consensus       393 ~~~~~  397 (443)
                      ..+++
T Consensus       261 ~~~~~  265 (284)
T d1ml9a_         261 NGLTG  265 (284)
T ss_dssp             C----
T ss_pred             CCCCC
Confidence            87653
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2d8ya1 g.39.1.3 (A:9-43) Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure