Citrus Sinensis ID: 038715

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330--
Protein Sequence
MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCDCGIIFSSQNLAASGGMAQSQAQELFSSSMPSTDSDSNTNIRMNPSISRDNIENSLRPLSMSSVGVMVSSNLDPILTSRVSKPYLSSVCGSNACAMAIGSSFTSSTALLQKAAEMGTMMRFTVFSSSSITSSGFLRQGSSNGLYVDKNLEPGDQRESCSLLQSKNGNAASALVQVHMGGSEKMTADFLWAEVEQPVGSGHSNYGKKRSLGGTVVDLGYSNE
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccEEEcccccccccccccccccccccccccccccccccccEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEccccccHHHHHHHHHccccccccccccccccccEEEEEccccccccccccHcHccHHHHHHHccccccccccEccccccEEEEEccHHHHHcccccEEEEcccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccEcccccccccccccccHcccccccccHHHHHHHcccccccccEEEEEcccccccccccccccEEEccccEEEEccccc
Coil and Loop (DISEMBL)
MATNRYICEvchkgfqrdqnlqlhrkghnlpwklmqrpttqvkkgvyvcpkpncvhhhpsralgdltgvkkhfcrkhgekkwkcdkcskcyavqsDWKAHTkicgtrehrcdcgiifssqnlaasggmAQSQAQELfsssmpstdsdsntnirmnpsisrdnienslrplsmsSVGVMvssnldpiltsrvskpylssvcgsnacamaigssfTSSTALLQKAAEMGTMMRFTVfssssitssgflrqgssnglyvdknlepgdqrescsLLQSKNGNAASALVQVHMGGSEKMTADFLWaeveqpvgsghsnygkkrslggtvvdlgysne
Flexible Loop (DISEMBL)
MATNRYICEVchkgfqrdqnlqlhrkghnlpwklmqrptTQVKKGVYVCPKPNCVHhhpsralgdltgVKKHFCRKhgekkwkcdkcskCYAVQSDWKAHTKICGTREHRCDCGIIFSSQNLAASGGMAQSQAQELFSSSMPSTDSDSNTNIRMNPSISRDNIENSLRPLSMSSVGVMVSSNLDPILTSRVSKPYLSSVCGSNACAMAIGSSFTSSTALLQKAAEMGTMMRFTVFSSSSITSSGFLRQGSSNGLYVDKNLEPGDQRESCSLLQSKNGNAASALVQVHMGGSEKMTADFLWAEVEQPvgsghsnygkkrslggtvvdlgysne
Low Complexity Region (SEG)
MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCDCGIIFSSQNLaasggmaqsqaqELFsssmpstdsdsntnIRMNPSISRDNIENSLRPLsmssvgvmvssNLDPILTSRVSKPYLSSVCGSNACAMAIGSSFTSSTALLQKAAEMGTMMRFTVFssssitssGFLRQGSSNGLYVDKNLEPGDQRESCSLLQSKNGNAASALVQVHMGGSEKMTADFLWAEVEQPVGSGHSNYGKKRSLGGTVVDLGYSNE
Disordered region (IsUnstruct)
****RYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCDCGIIFSS**************************************************************NLDPILTSRVSKPYLSSVCGSNACAMAIGSSFTSSTALLQKAAEMGTMMRFTVFS*************************************************V*******MTADFLWAEV*****************************
Disordered Region (DISOPRED)
MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQ****QVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCDCGIIFSSQNLAASGGMAQSQAQELFSSSMPSTDSDSNTNI****************************************************************TALLQKAAEMGTMMRFTVFS**********************************************************TADFLW********************************
Disordered Region (DISEMBL)
MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCDCGIIFSSQNL***************************TNIRMNPSISRDNIENSLRPLSMSSVGVMVSSNLDPILTSRVSKPYLSSVCGSNACAMAIGSSFTSSTALLQKAAEMGTMMRFTVFSSSSITSSGFLRQGSSNGLYVDKNLEPGDQRESCSLLQSKNGNAASALVQVHMGGSEKMTADFLWAEVEQPVGSGHSNYGKKRSLGGTVVDLGYSNE
Disordered Region (DISPRO)
**TNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCDCGIIFSSQNLAASGGMAQSQAQE******************************************************************************TSSTALLQKAAEMGTMMR**********SS**LRQGSSNGLYVDKNLE*****************AASALVQVHMGGSEKMTADFLWAEVEQPVGSGHSNYGKKRSLGGTVVDLGYSN*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCDCGIIFSSQNLAASGGMAQSQAQELFSSSMPSTDSDSNTNIRMNPSISRDNIENSLRPLSMSSVGVMVSSNLDPILTSRVSKPYLSSVCGSNACAMAIGSSFTSSTALLQKAAEMGTMMRFTVFSSSSITSSGFLRQGSSNGLYVDKNLEPGDQRESCSLLQSKNGNAASALVQVHMGGSEKMTADFLWAEVEQPVGSGHSNYGKKRSLGGTVVDLGYSNE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	332	2.2.26 [Sep-21-2011]
Q9ZWA6	506	Zinc finger protein MAGPI	no	no	0.364	0.239	0.776	3e-59
Q9FFH3	466	Zinc finger protein NUTCR	no	no	0.364	0.259	0.776	2e-57
Q700D2	503	Zinc finger protein JACKD	no	no	0.364	0.240	0.737	3e-54
Q9C8N5	499	Protein SENSITIVE TO PROT	no	no	0.364	0.242	0.318	4e-13
Q943I6	522	Zinc finger protein STOP1	no	no	0.349	0.222	0.318	8e-13
Q2QX40	465	Zinc finger protein STAR3	no	no	0.409	0.292	0.309	1e-11
Q8VWG3	303	Protein TRANSPARENT TESTA	no	no	0.355	0.389	0.341	1e-10
O43313	823	ATM interactor OS=Homo sa	yes	no	0.334	0.134	0.355	2e-09
Q6P9S1	818	ATM interactor OS=Mus mus	yes	no	0.219	0.089	0.386	2e-08
Q8R0T2	568	Zinc finger protein 768 O	no	no	0.328	0.191	0.278	2e-05

>sp|Q9ZWA6|MGP_ARATH Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1

 Score =  229 bits (583), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 94/121 (77%), Positives = 111/121 (91%)

Query: 1   MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPS 60
           MATNR++CE+C KGFQRDQNLQLHR+GHNLPWKL QR + +V+K VYVCP+ +CVHHHP+
Sbjct: 65  MATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKSCVHHHPT 124

Query: 61  RALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCDCGIIFSSQ 120
           RALGDLTG+KKHFCRKHGEKKWKC+KC+K YAVQSDWKAH+K CGTRE+RCDCG IFS +
Sbjct: 125 RALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRR 184

Query: 121 N 121
           +
Sbjct: 185 D 185

Probable transcription factor that regulates tissue boundaries and asymmetric cell division. Might be involved in the sequestration of 'SHORT-ROOT' to the nucleus.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFH3|NUC_ARATH Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1

 Score =  223 bits (568), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 94/121 (77%), Positives = 108/121 (89%)

Query: 1   MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPS 60
           MATNR++CEVC KGFQRDQNLQLHR+GHNLPWKL QR + +V+K VYVCP+  CVHHH S
Sbjct: 61  MATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHSS 120

Query: 61  RALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCDCGIIFSSQ 120
           RALGDLTG+KKHFCRKHGEKKW C+KC+K YAVQSDWKAH+K CGTRE+RCDCG IFS +
Sbjct: 121 RALGDLTGIKKHFCRKHGEKKWTCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRR 180

Query: 121 N 121
           +
Sbjct: 181 D 181

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D2|JKD_ARATH Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1

 Score =  212 bits (540), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 90/122 (73%), Positives = 105/122 (86%), Gaps = 1/122 (0%)

Query: 1   MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQV-KKGVYVCPKPNCVHHHP 59
           MATNR++CE+C+KGFQRDQNLQLHR+GHNLPWKL QR   +V KK VY+CP   CVHH  
Sbjct: 77  MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKQEVIKKKVYICPIKTCVHHDA 136

Query: 60  SRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCDCGIIFSS 119
           SRALGDLTG+KKH+ RKHGEKKWKC+KCSK YAVQSDWKAH K CGTRE++CDCG +FS 
Sbjct: 137 SRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTREYKCDCGTLFSR 196

Query: 120 QN 121
           ++
Sbjct: 197 KD 198

Probable transcription factor that regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action. Required for radial patterning and stem cell maintenance. Counteracted by 'MAGPIE' (MGP).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8N5|STOP1_ARATH Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 14/135 (10%)

Query: 1   MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKL---MQRPTTQVKKGV-------YVCP 50
           +A + + C +C KGF+RD NL++H +GH   +K    + +P  +   G        Y CP
Sbjct: 239 LAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESVPGSEPMLIKRYSCP 298

Query: 51  KPNC---VHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC-SKCYAVQSDWKAHTKICGT 106
              C     H   + L  +  VK H+ R H +K + C +C +K ++V +D K H K CG 
Sbjct: 299 FLGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKKFSVIADLKTHEKHCGK 358

Query: 107 REHRCDCGIIFSSQN 121
            +  C CG  FS ++
Sbjct: 359 NKWLCSCGTTFSRKD 373

Probable transcription factor. Plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q943I6|STOP1_ORYSJ Zinc finger protein STOP1 homolog OS=Oryza sativa subsp. japonica GN=Os01g0871200 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 22/138 (15%)

Query: 1   MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWK-------------LMQRPTTQVKKGVY 47
           +A + + C +C KGF+RD NL++H +GH   +K             L   P T+     Y
Sbjct: 277 LAPHTHFCLICGKGFKRDANLRMHMRGHGDEYKTAAALAKPSKDSSLESAPVTR-----Y 331

Query: 48  VCPKPNC---VHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC-SKCYAVQSDWKAHTKI 103
            CP   C     H   + L  +  VK H+ R H +K + C +C +K ++V +D K H K 
Sbjct: 332 SCPYVGCKRNKEHKKFQPLKTILCVKNHYKRSHCDKSYTCSRCNTKKFSVIADLKTHEKH 391

Query: 104 CGTREHRCDCGIIFSSQN 121
           CG  +  C CG  FS ++
Sbjct: 392 CGRDKWLCSCGTTFSRKD 409

Probable transcription factor that may be involved in aluminum tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QX40|ART1_ORYSJ Zinc finger protein STAR3 OS=Oryza sativa subsp. japonica GN=STAR3 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 68/152 (44%), Gaps = 16/152 (10%)

Query: 1   MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGV-----------YVC 49
           +A + + C +C KGF+RD NL++H +GH   +K                        Y C
Sbjct: 224 LAPHTHFCGICGKGFKRDANLRMHMRGHGDEYKSAAALAKPPPPPEGEEQPPQPERRYSC 283

Query: 50  PKPNCVH---HHPSRALGDLTGVKKHFCRKHGEKKWKCDKC-SKCYAVQSDWKAHTKICG 105
           P   C     H   + L  +  VK H+ R H EK+  C +C +K ++V +D K H K CG
Sbjct: 284 PHAGCKRNRMHASFQPLKTILCVKNHYKRSHCEKRHVCGRCGAKRFSVMADLKTHEKHCG 343

Query: 106 TREHRCDCGIIFSSQN-LAASGGMAQSQAQEL 136
                C CG  FS ++ L A   + Q  A  L
Sbjct: 344 RDRWLCSCGTSFSRKDKLFAHVALFQGHAPAL 375

Transcriptional activator that regulates the expression of genes involved in aluminum (Al) tolerance. Binds to the promoter of STAR1 and regulates transcript expression of STAR1 STAR2 and ART1 required for Al tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VWG3|TT1_ARATH Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana GN=TT1 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 61/129 (47%), Gaps = 11/129 (8%)

Query: 1   MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQ------RPTTQVKKGVYVCPKPNC 54
           +    + C VC K F R  NLQ+H  GH   ++         +P   +    Y C +  C
Sbjct: 140 IGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAMLGIPCYCCVE-GC 198

Query: 55  VHH--HP-SRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRC 111
            +H  HP S+ L D   ++ H+ RKHG K + C  C K  AV+ DW+ H K CG R   C
Sbjct: 199 RNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSCRLCGKLLAVKGDWRTHEKNCGKRW-VC 257

Query: 112 DCGIIFSSQ 120
            CG  F  +
Sbjct: 258 VCGSDFKHK 266

May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat.

Arabidopsis thaliana (taxid: 3702)

>sp|O43313|ATMIN_HUMAN ATM interactor OS=Homo sapiens GN=ATMIN PE=1 SV=2

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 58/121 (47%), Gaps = 10/121 (8%)

Query: 7   ICEV--CHKGFQRDQNLQLHR-KGHNLPWKLMQRPTTQ--VKKG--VYVCPKPNCVHHHP 59
           +C V  C K       L +H  K H L   ++  PT +  +K G   Y CP   C    P
Sbjct: 85  LCTVRGCGKILPNSPALNMHLVKSHRLQDGIV-NPTIRKDLKTGPKFYCCPIEGC-PRGP 142

Query: 60  SRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCDCGIIFSS 119
            R     + VK+HF + H EKK KC KCS  Y  + D K H + CG +  RC CG  ++S
Sbjct: 143 ERPFSQFSLVKQHFMKMHAEKKHKCSKCSNSYGTEWDLKRHAEDCG-KTFRCTCGCPYAS 201

Query: 120 Q 120
           +
Sbjct: 202 R 202

Plays a crucial role in cell survival and RAD51 foci formation in response to methylating DNA damage. Involved in regulating the activity of ATM in the absence of DNA damage. May play a role in stabilizing ATM.

Homo sapiens (taxid: 9606)

>sp|Q6P9S1|ATMIN_MOUSE ATM interactor OS=Mus musculus GN=Atmin PE=2 SV=2

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 47  YVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGT 106
           Y CP   C    P R     + VK+HF + H EKK KC KCS  Y  + D K H + CG 
Sbjct: 127 YCCPIKGC-PRGPDRPFSQFSLVKQHFMKMHAEKKHKCSKCSNSYGTEWDLKRHEEDCG- 184

Query: 107 REHRCDCGIIFSSQN 121
           +  +C CG  ++S+ 
Sbjct: 185 KTFQCTCGCPYASRT 199

Plays a crucial role in cell survival and RAD51 foci formation in response to methylating DNA damage. Involved in regulating the activity of ATM in the absence of DNA damage. May play a role in stabilizing ATM.

Mus musculus (taxid: 10090)

>sp|Q8R0T2|ZN768_MOUSE Zinc finger protein 768 OS=Mus musculus GN=Znf768 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 24/133 (18%)

Query: 6   YICEVCHKGFQRDQNLQLHRKGH--NLPWK-------------LMQRPTTQVKKGVYVCP 50
           Y CEVC K F +  +L  H++ H    P+K             L++   T   +  Y CP
Sbjct: 317 YKCEVCSKAFSQSSDLIKHQRTHTGERPYKCPRCGKAFADSSYLLRHQRTHSGQKPYKCP 376

Query: 51  KPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREH 109
                  H  +A GD + + +H      E+ + C +C KCY+  S  ++H ++  G R  
Sbjct: 377 -------HCGKAFGDSSYLLRHQRTHSHERPYSCPECGKCYSQNSSLRSHQRVHTGQRPF 429

Query: 110 RCD-CGIIFSSQN 121
            C  CG  FS ++
Sbjct: 430 SCGICGKSFSQRS 442

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
255543258	453	nucleic acid binding protein, putative [	0.981	0.719	0.532	1e-102
359483213	443	PREDICTED: uncharacterized protein LOC10	0.981	0.735	0.515	4e-96
297735664	394	unnamed protein product [Vitis vinifera]	0.981	0.827	0.515	1e-95
356576787	529	PREDICTED: zinc finger protein NUTCRACKE	0.888	0.557	0.446	8e-65
296089673	513	unnamed protein product [Vitis vinifera]	0.656	0.424	0.486	7e-64
49387768	492	putative zinc finger protein [Oryza sati	0.647	0.436	0.513	8e-64
125539660	492	hypothetical protein OsI_07423 [Oryza sa	0.647	0.436	0.513	1e-63
413937049	508	hypothetical protein ZEAMMB73_994420 [Ze	0.683	0.446	0.502	6e-63
356522186	498	PREDICTED: zinc finger protein NUTCRACKE	0.692	0.461	0.5	2e-62
319428678	515	zinc finger protein [Phaseolus vulgaris]	0.671	0.433	0.501	3e-62

>gi|255543258|ref|XP_002512692.1| nucleic acid binding protein, putative [Ricinus communis] gi|223548653|gb|EEF50144.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/394 (53%), Positives = 253/394 (64%), Gaps = 68/394 (17%)

Query: 1   MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPS 60
           MATNRYICEVCHKGFQRDQNLQLHR+GHNLPWKL QRPTTQ+KK VYVCP+P C+HH PS
Sbjct: 48  MATNRYICEVCHKGFQRDQNLQLHRRGHNLPWKLKQRPTTQIKKRVYVCPEPTCMHHDPS 107

Query: 61  RALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCDCGIIFS-- 118
           RALGDLTG+KKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTRE+RCDCG IFS  
Sbjct: 108 RALGDLTGIKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREYRCDCGTIFSRK 167

Query: 119 --------------------SQNLAASGGMAQSQAQELFSSSMPSTDSDSNTNIRMNPSI 158
                               +QNLAA+GG+ QSQ  EL +S+MPS+ S S  N  MN + 
Sbjct: 168 DSFITHRAFCDALAEENYKANQNLAATGGILQSQVPELVTSTMPSSISCSKKNSIMNLTN 227

Query: 159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRVSKPYLSSVCGSNACAMAIGSSFTSSTA 218
             +NI+ SLRPLS++S  +++ S L P+L  R S   L+S   SN   MAIG+ +TS+TA
Sbjct: 228 PYENIDISLRPLSLNSDRLLMPSKLSPMLNPRASLACLNSPDESNVSPMAIGAPYTSATA 287

Query: 219 LLQKAAEMGT----------MMR-FTVFSSSSITSSGFLRQGSS-------------NGL 254
           LLQKAAEMGT          ++R FT +S+S + SSG   +GS              N L
Sbjct: 288 LLQKAAEMGTKISDNSISPILLRGFTGYSTSRMNSSGSAHEGSVIVSSNMGPTAASMNNL 347

Query: 255 YV-----DKNLEPGDQRESCSLLQSK------------NGNAASALVQVHMGGSEKMTAD 297
           +V     D+N  PG  R   S+ Q++              N      +V+  G +KMT D
Sbjct: 348 FVGETEFDENFNPGYPRNGYSISQTQFCESPLNMHPESRNNVNILRGEVYTEGGKKMTLD 407

Query: 298 FLWAEVEQPVGSGHSNYGKKRSLGGTVVDLGYSN 331
           FL  EVE P+   HS  GKKR   G +++LGYSN
Sbjct: 408 FL--EVE-PI--EHSTIGKKRHYEGNIMELGYSN 436

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483213|ref|XP_002270688.2| PREDICTED: uncharacterized protein LOC100258126 [Vitis vinifera]

 Score =  357 bits (916), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 203/394 (51%), Positives = 246/394 (62%), Gaps = 68/394 (17%)

Query: 1   MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPS 60
           MATNRYICEVCHKGFQRDQNLQLHR+GHNLPWKL QR  T+VKK VYVCP+PNCVHH PS
Sbjct: 50  MATNRYICEVCHKGFQRDQNLQLHRRGHNLPWKLKQRSNTEVKKRVYVCPEPNCVHHDPS 109

Query: 61  RALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCDCGIIFS-- 118
           RALGDLTG+KKHFCRKHGEK+WKCDKCSK YAVQSDWKAHTKICGTRE+RCDCG IFS  
Sbjct: 110 RALGDLTGIKKHFCRKHGEKRWKCDKCSKRYAVQSDWKAHTKICGTREYRCDCGTIFSRK 169

Query: 119 --------------------SQNLAASGGMAQSQAQELFSSSMPSTDSDSNTNIRMNPSI 158
                               +Q +AA+GG   +Q Q LFSSSMP+++S S  N+ MN S+
Sbjct: 170 DSFVTHRAFCDASAAENYKANQQIAAAGGTPHNQPQVLFSSSMPTSESSSGANMSMNLSV 229

Query: 159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRVSKPYLSSVCGSNACAMAIGSSFTSSTA 218
             +NI+N  RP S++S G+ +S+NL+ I     S+    S  GSN   M IGS++TS+TA
Sbjct: 230 FNENIDNITRPASLNSPGLTISNNLNQIFNPTTSQECFGSGIGSNNSPMGIGSTYTSATA 289

Query: 219 LLQKAAEMGTMMR-----------FTVFSSSSITSSGFLRQGSS-------------NGL 254
           LLQKAAEMG  +            FT +S  S  S G +++ SS             NGL
Sbjct: 290 LLQKAAEMGAKISDNSIAPVLFRGFTGYSVGSTNSCGSVQETSSVISCSMGPVSATANGL 349

Query: 255 YV------DKNLEPGDQR-----------ESCSLLQSKNGNAASALVQVHMGGSEKMTAD 297
           YV      +K+L+  D R           +S   +Q KN N A  L ++ MG  EKMT D
Sbjct: 350 YVGNQETFNKDLDAVDVRPSYAVSHSGLFDSSLFMQMKNQNPADRLEELFMGDGEKMTVD 409

Query: 298 FLWAEVEQPVGSGHSNYGKKRSLGGTVVDLGYSN 331
           FL  E      + + + GKKRS  G  + L YSN
Sbjct: 410 FLGVEP-----TAYPSNGKKRSYDGNFMGLEYSN 438

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735664|emb|CBI18351.3| unnamed protein product [Vitis vinifera]

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 203/394 (51%), Positives = 246/394 (62%), Gaps = 68/394 (17%)

Query: 1   MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPS 60
           MATNRYICEVCHKGFQRDQNLQLHR+GHNLPWKL QR  T+VKK VYVCP+PNCVHH PS
Sbjct: 1   MATNRYICEVCHKGFQRDQNLQLHRRGHNLPWKLKQRSNTEVKKRVYVCPEPNCVHHDPS 60

Query: 61  RALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCDCGIIFS-- 118
           RALGDLTG+KKHFCRKHGEK+WKCDKCSK YAVQSDWKAHTKICGTRE+RCDCG IFS  
Sbjct: 61  RALGDLTGIKKHFCRKHGEKRWKCDKCSKRYAVQSDWKAHTKICGTREYRCDCGTIFSRK 120

Query: 119 --------------------SQNLAASGGMAQSQAQELFSSSMPSTDSDSNTNIRMNPSI 158
                               +Q +AA+GG   +Q Q LFSSSMP+++S S  N+ MN S+
Sbjct: 121 DSFVTHRAFCDASAAENYKANQQIAAAGGTPHNQPQVLFSSSMPTSESSSGANMSMNLSV 180

Query: 159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRVSKPYLSSVCGSNACAMAIGSSFTSSTA 218
             +NI+N  RP S++S G+ +S+NL+ I     S+    S  GSN   M IGS++TS+TA
Sbjct: 181 FNENIDNITRPASLNSPGLTISNNLNQIFNPTTSQECFGSGIGSNNSPMGIGSTYTSATA 240

Query: 219 LLQKAAEMGTMMR-----------FTVFSSSSITSSGFLRQGSS-------------NGL 254
           LLQKAAEMG  +            FT +S  S  S G +++ SS             NGL
Sbjct: 241 LLQKAAEMGAKISDNSIAPVLFRGFTGYSVGSTNSCGSVQETSSVISCSMGPVSATANGL 300

Query: 255 YV------DKNLEPGDQR-----------ESCSLLQSKNGNAASALVQVHMGGSEKMTAD 297
           YV      +K+L+  D R           +S   +Q KN N A  L ++ MG  EKMT D
Sbjct: 301 YVGNQETFNKDLDAVDVRPSYAVSHSGLFDSSLFMQMKNQNPADRLEELFMGDGEKMTVD 360

Query: 298 FLWAEVEQPVGSGHSNYGKKRSLGGTVVDLGYSN 331
           FL  E      + + + GKKRS  G  + L YSN
Sbjct: 361 FLGVEP-----TAYPSNGKKRSYDGNFMGLEYSN 389

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576787|ref|XP_003556511.1| PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max]

 Score =  253 bits (646), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 157/352 (44%), Positives = 205/352 (58%), Gaps = 57/352 (16%)

Query: 1   MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPS 60
           MATNR+ICE+C+KGFQRDQNLQLHR+GHNLPWKL QR +T+++K VYVCP+P+CVHH+P+
Sbjct: 87  MATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTEIRKRVYVCPEPSCVHHNPA 146

Query: 61  RALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCDCGIIFSSQ 120
           RALGDLTG+KKHFCRKHGEKKWKCDKCSK YAVQSDWKAH+KICGTRE++CDCG IFS +
Sbjct: 147 RALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRR 206

Query: 121 -----------------NLAASGGMAQ-------SQAQELFSSSMPSTDSDSNTNIRMNP 156
                            N A  G + +        Q   L SSS+P      NTNI  NP
Sbjct: 207 DSFITHRAFCDALAEENNKANEGQLPKIGPNLQCQQIPNLVSSSLP-----INTNIVPNP 261

Query: 157 SI---SRDNIENSLRPLSMS---------------SVGVMVSSNLDPILTSRVSKPYLSS 198
            +   S  N  +   PLS+                + G  V +      TS  S    S+
Sbjct: 262 QMGGTSEFNHADHKHPLSLPHELMPMPAQKSFNNMAAGTTVFTRSL-SSTSSPSLQLSSN 320

Query: 199 VCGSNACAMAIGSSFTSSTALLQKAAEMG-TMMRFTVFSSSSITSSGFLRQ--GSSNGL- 254
           +   N   +A GS   S+TALLQKAA+MG T+   T  ++ +  S G L+Q     NG  
Sbjct: 321 MFEENGLHLAAGSPHMSATALLQKAAQMGATVTEKTFVTNMAPPSFGVLQQHHQQPNGQP 380

Query: 255 YVDKNLEPGDQRESCSLLQSKNGNAASALVQVHMGGSEKMTA-DFLWAEVEQ 305
           ++++ +  G Q++  ++    N   A+ +     GGS  M   D   A ++Q
Sbjct: 381 FMNQYMHSGQQQQDVNISAQYNSFGANGM----GGGSVGMNGVDMFNAILDQ 428

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089673|emb|CBI39492.3| unnamed protein product [Vitis vinifera]

 Score =  250 bits (638), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 129/265 (48%), Positives = 168/265 (63%), Gaps = 47/265 (17%)

Query: 1   MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPS 60
           MATNR++CE+C+KGFQRDQNLQLHR+GHNLPWKL QR +T+++K VYVCP+P+CVHH+P+
Sbjct: 82  MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSTEIRKRVYVCPEPSCVHHNPA 141

Query: 61  RALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCDCGIIFS-- 118
           RALGDLTG+KKHFCRKHGEKKWKCDKCSK YAVQSDWKAH+K CGTRE++CDCG IFS  
Sbjct: 142 RALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTIFSRR 201

Query: 119 --------------SQNLAASGGMA---------QSQAQELFSSSMP------------- 142
                          +N   + G+A         Q Q  EL  SSMP             
Sbjct: 202 DSFITHRAFCDALAEENTKVNQGLANTMRRNLQIQGQVSELL-SSMPLNNNPNSTMGLSE 260

Query: 143 STDSDSNTNIRMNPSISRDNIENSLRPLSMSSVGVMVSSNLDPILTSRVSKPYLSSVCGS 202
            T SDS  +++   ++  + +    +PL+M++ G+  +++      S    P  +S    
Sbjct: 261 FTHSDSKNHLK---TLPHEPMPVPPKPLNMAAAGMFSTTS-----GSLFGCPITASFENG 312

Query: 203 NACAMAIGSSFTSSTALLQKAAEMG 227
                   S+  S+TALLQKAA+MG
Sbjct: 313 QQLPPPPASTLMSATALLQKAAQMG 337

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|49387768|dbj|BAD26326.1| putative zinc finger protein [Oryza sativa Japonica Group] gi|125582301|gb|EAZ23232.1| hypothetical protein OsJ_06922 [Oryza sativa Japonica Group]

 Score =  250 bits (638), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 133/259 (51%), Positives = 165/259 (63%), Gaps = 44/259 (16%)

Query: 1   MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPS 60
           +ATNRYICEVCHKGFQRDQNLQLHR+GHNLPWKL QR +T+ KK VYVCP+  C HH  +
Sbjct: 61  LATNRYICEVCHKGFQRDQNLQLHRRGHNLPWKLKQRSSTEAKKKVYVCPEITCPHHDAT 120

Query: 61  RALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCDCGIIFSSQ 120
           RALGDLTG+KKH+ RKHGEKKWKCD+CSK YAVQSDWKAHTKICGT+E+RCDCG IFS +
Sbjct: 121 RALGDLTGIKKHYSRKHGEKKWKCDRCSKKYAVQSDWKAHTKICGTKEYRCDCGTIFSRK 180

Query: 121 N----------------------LAASGGMAQSQAQELFSSSMPSTDSDSNTNIRMNPSI 158
           +                      LA   G    Q Q++FS  +PS  S S T++  N + 
Sbjct: 181 DSFITHRAFCDALAEDTSRVNHSLATMVGSLHGQQQDMFSHGVPSF-SSSPTDMIANLAS 239

Query: 159 SRDNIENSLRPLSMSSV----GVMVSSNLD------PILTSRVSKPYLSSVCGSNACAMA 208
           +  N ++ LR LS  ++      + S+ +       P+  S  S PY           M+
Sbjct: 240 NDHNSDSHLRSLSPYALVTRNTTLFSNQISPKESGFPLDGSVTSYPY-----------MS 288

Query: 209 IGSSFTSSTALLQKAAEMG 227
           + S + S+TALLQKAAEMG
Sbjct: 289 MNSPYMSATALLQKAAEMG 307

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125539660|gb|EAY86055.1| hypothetical protein OsI_07423 [Oryza sativa Indica Group]

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 133/259 (51%), Positives = 165/259 (63%), Gaps = 44/259 (16%)

Query: 1   MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPS 60
           +ATNRYICEVCHKGFQRDQNLQLHR+GHNLPWKL QR +T+ KK VYVCP+  C HH  +
Sbjct: 61  LATNRYICEVCHKGFQRDQNLQLHRRGHNLPWKLKQRSSTEAKKKVYVCPEITCPHHDAT 120

Query: 61  RALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCDCGIIFSSQ 120
           RALGDLTG+KKH+ RKHGEKKWKCD+CSK YAVQSDWKAHTKICGT+E+RCDCG IFS +
Sbjct: 121 RALGDLTGIKKHYSRKHGEKKWKCDRCSKKYAVQSDWKAHTKICGTKEYRCDCGTIFSRK 180

Query: 121 N----------------------LAASGGMAQSQAQELFSSSMPSTDSDSNTNIRMNPSI 158
           +                      LA   G    Q Q++FS  +PS  S S T++  N + 
Sbjct: 181 DSFITHRAFCDALAEDTSRVNHSLATMVGSLHGQQQDMFSHGVPSF-SSSPTDMIANLAS 239

Query: 159 SRDNIENSLRPLSMSSV----GVMVSSNLD------PILTSRVSKPYLSSVCGSNACAMA 208
           +  N ++ LR LS  ++      + S+ +       P+  S  S PY+S+          
Sbjct: 240 NDHNSDSHLRSLSPYALVTRNTALFSNQISPKESGFPLDGSVTSYPYMST---------- 289

Query: 209 IGSSFTSSTALLQKAAEMG 227
             S + S+TALLQKAAEMG
Sbjct: 290 -NSPYMSATALLQKAAEMG 307

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413937049|gb|AFW71600.1| hypothetical protein ZEAMMB73_994420 [Zea mays]

 Score =  247 bits (630), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 125/249 (50%), Positives = 159/249 (63%), Gaps = 22/249 (8%)

Query: 1   MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPS 60
           +ATNRYICEVCHKGFQRDQNLQLHR+GHNLPWKL QR +T+ KK VYVCP+  C HH  S
Sbjct: 67  LATNRYICEVCHKGFQRDQNLQLHRRGHNLPWKLKQRSSTEAKKKVYVCPEATCPHHDAS 126

Query: 61  RALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCDCGIIFSSQ 120
           RALGDLTG+KKH+ RKHGEKKWKCD+CSK YAVQSDWKAHTKICGT+E+RCDCG IFS +
Sbjct: 127 RALGDLTGIKKHYSRKHGEKKWKCDRCSKKYAVQSDWKAHTKICGTKEYRCDCGTIFSRK 186

Query: 121 N----------------------LAASGGMAQSQAQELFSSSMPSTDSDSNTNIRMNPSI 158
           +                      LA   G      Q++FS  +P+  +     +    SI
Sbjct: 187 DSFITHRAFCDALAEDTSRVNHSLATMVGSLHGHQQDIFSHGVPTFPTSPPDVMANLSSI 246

Query: 159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRVSKPYLSSVCGSNACAMAIGSSFTSSTA 218
           +  N ++ LR LS  ++    ++     ++ +    +      S+   M++ S + S+TA
Sbjct: 247 NDHNSDSHLRSLSPYALITRNTALFSNQISPKDPGGFPLDGSASSYPYMSMTSPYMSATA 306

Query: 219 LLQKAAEMG 227
           LLQKAAEMG
Sbjct: 307 LLQKAAEMG 315

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522186|ref|XP_003529728.1| PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max]

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 123/246 (50%), Positives = 161/246 (65%), Gaps = 16/246 (6%)

Query: 1   MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPS 60
           +ATNR+ICE+C+KGFQRDQNLQLHR+GHNLPWKL QR + +V+K VYVCP+P+CVHH PS
Sbjct: 82  LATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEPSCVHHDPS 141

Query: 61  RALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCDCGIIFSSQ 120
           RALGDLTG+KKHFCRKHGEKKWKCDKCSK YAVQSDWKAH+K CGTRE+RCDCG +FS +
Sbjct: 142 RALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRR 201

Query: 121 N-----LAASGGMAQSQAQELFSSSMPSTDSD------SNTNIRMNP-SISRDNIENSLR 168
           +      A    +A+  A+ + +  +P           S    + NP ++    ++  + 
Sbjct: 202 DSFITHRAFCDALAEESARAIANPLLPPQQQQSSSSHMSTLQTQFNPQNLHAFPLKKEMP 261

Query: 169 PLSMSSVGVMVSSNLDPILTSRVSKPYLS----SVCGSNACAMAIGSSFTSSTALLQKAA 224
           P       V+V  +L    +   S P+      S+  + A    + +   S+TALLQKAA
Sbjct: 262 PWLGPPATVVVDHHLSSSSSIMFSPPHQENPNPSLGPTLAAYQTVPNPHMSATALLQKAA 321

Query: 225 EMGTMM 230
           +MG  M
Sbjct: 322 QMGATM 327

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|319428678|gb|ADV56701.1| zinc finger protein [Phaseolus vulgaris]

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 134/267 (50%), Positives = 168/267 (62%), Gaps = 44/267 (16%)

Query: 1   MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPS 60
           MATNR++CE+C+KGFQRDQNLQLHR+GHNLPWKL QR +T+VKK VYVCP+P+CVHH+P+
Sbjct: 86  MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSTEVKKRVYVCPEPSCVHHNPA 145

Query: 61  RALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCDCGIIFSSQ 120
           RALGDLTG+KKH+ RKHGEKKWKCDKCSK YAVQSDWKAH K CGTRE++CDCG IFS +
Sbjct: 146 RALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRR 205

Query: 121 --------------------NLAASGGMA---QSQAQELFSSSMPSTDSDSNTNIRMNPS 157
                               N   + GM    QSQ  +L  S+MP    +++ N   +P 
Sbjct: 206 DSFITHRAFCDALTEENNRVNQGLTSGMPPNLQSQIPDLM-STMP---LNTSPNTAYDPK 261

Query: 158 ISRDNIENSLRPL---SMSSVGVMVSSNLDPILTSRVSKPYLSS--VCGSN--------- 203
               ++   L P+   SMS  G M S+N   +     + P  SS    GSN         
Sbjct: 262 NPLKSLPQELVPIPFKSMSMGGGMFSTNAGALFGGPKTMPPSSSNLQLGSNTSSSFNYLQ 321

Query: 204 ---ACAMAIGSSFTSSTALLQKAAEMG 227
              +  +   S+  S+TALLQKAA+MG
Sbjct: 322 DNKSAGLIAASAQMSATALLQKAAQMG 348

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
TAIR|locus:2173624	500	IDD1 "AT5G66730" [Arabidopsis	0.364	0.242	0.776	1.1e-60
TAIR|locus:2101739	452	IDD2 "AT3G50700" [Arabidopsis	0.364	0.267	0.768	1.1e-60
TAIR|locus:2024193	506	MGP "AT1G03840" [Arabidopsis t	0.364	0.239	0.776	1.4e-60
TAIR|locus:2051688	516	IDD4 "indeterminate(ID)-domain	0.364	0.234	0.760	4.8e-60
TAIR|locus:2132397	402	IDD12 "AT4G02670" [Arabidopsis	0.364	0.300	0.786	1.1e-58
TAIR|locus:2051698	602	IDD5 "AT2G02070" [Arabidopsis	0.364	0.200	0.768	1.1e-58
TAIR|locus:2167608	466	NUC "AT5G44160" [Arabidopsis t	0.364	0.259	0.776	1.1e-58
TAIR|locus:2205672	455	IDD7 "AT1G55110" [Arabidopsis	0.364	0.265	0.770	2.9e-58
TAIR|locus:2078262	446	AT3G45260 "AT3G45260" [Arabido	0.364	0.271	0.762	4.2e-57
TAIR|locus:2204503	467	AT1G14580 "AT1G14580" [Arabido	0.364	0.259	0.743	8.8e-57

TAIR|locus:2173624 IDD1 "AT5G66730" [Arabidopsis thaliana (taxid:3702)]

 Score = 574 (207.1 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 94/121 (77%), Positives = 110/121 (90%)

Query:     1 MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPS 60
             MATNR++CE+C+KGFQRDQNLQLHR+GHNLPWKL QR T +V+K VYVCP   CVHH PS
Sbjct:    56 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTKEVRKKVYVCPVSGCVHHDPS 115

Query:    61 RALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCDCGIIFSSQ 120
             RALGDLTG+KKHFCRKHGEKKWKC+KCSK YAVQSDWKAH+KICGT+E++CDCG +FS +
Sbjct:   116 RALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRR 175

Query:   121 N 121
             +
Sbjct:   176 D 176

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009937 "regulation of gibberellic acid mediated signaling pathway" evidence=IMP

GO:0010029 "regulation of seed germination" evidence=IMP

GO:0010431 "seed maturation" evidence=IMP

TAIR|locus:2101739 IDD2 "AT3G50700" [Arabidopsis thaliana (taxid:3702)]

 Score = 573 (206.8 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 93/121 (76%), Positives = 111/121 (91%)

Query:     1 MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPS 60
             +ATNR++CE+C+KGFQRDQNLQLHR+GHNLPWKL Q+   +VKK VYVCP+ +CVHH PS
Sbjct:    58 LATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQKSNKEVKKKVYVCPEVSCVHHDPS 117

Query:    61 RALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCDCGIIFSSQ 120
             RALGDLTG+KKHFCRKHGEKKWKCDKCSK YAVQSDWKAH+KICGT+E++CDCG +FS +
Sbjct:   118 RALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRR 177

Query:   121 N 121
             +
Sbjct:   178 D 178

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2024193 MGP "AT1G03840" [Arabidopsis thaliana (taxid:3702)]

 Score = 576 (207.8 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
 Identities = 94/121 (77%), Positives = 111/121 (91%)

Query:     1 MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPS 60
             MATNR++CE+C KGFQRDQNLQLHR+GHNLPWKL QR + +V+K VYVCP+ +CVHHHP+
Sbjct:    65 MATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKSCVHHHPT 124

Query:    61 RALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCDCGIIFSSQ 120
             RALGDLTG+KKHFCRKHGEKKWKC+KC+K YAVQSDWKAH+K CGTRE+RCDCG IFS +
Sbjct:   125 RALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRR 184

Query:   121 N 121
             +
Sbjct:   185 D 185

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2051688 IDD4 "indeterminate(ID)-domain 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 4.8e-60, Sum P(2) = 4.8e-60
 Identities = 92/121 (76%), Positives = 110/121 (90%)

Query:     1 MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPS 60
             MATNR+IC+VC+KGFQR+QNLQLHR+GHNLPWKL Q+ T +VK+ VY+CP+P CVHH PS
Sbjct:    78 MATNRFICDVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEVKRKVYLCPEPTCVHHDPS 137

Query:    61 RALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCDCGIIFSSQ 120
             RALGDLTG+KKH+ RKHGEKKWKC+KCSK YAVQSDWKAH+K CGT+E+RCDCG IFS +
Sbjct:   138 RALGDLTGIKKHYYRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTKEYRCDCGTIFSRR 197

Query:   121 N 121
             +
Sbjct:   198 D 198

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2132397 IDD12 "AT4G02670" [Arabidopsis thaliana (taxid:3702)]

 Score = 580 (209.2 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
 Identities = 96/122 (78%), Positives = 111/122 (90%)

Query:     1 MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTT-QVKKGVYVCPKPNCVHHHP 59
             +ATNR++CE+C+KGFQRDQNLQLHR+GHNLPWKL Q+ T  Q KK VYVCP+ NC HHHP
Sbjct:    77 LATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQKNTKEQQKKKVYVCPETNCAHHHP 136

Query:    60 SRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCDCGIIFSS 119
             SRALGDLTG+KKHFCRKHGEKKWKC+KCSK YAVQSDWKAHTKICGTR++RCDCG +FS 
Sbjct:   137 SRALGDLTGIKKHFCRKHGEKKWKCEKCSKFYAVQSDWKAHTKICGTRDYRCDCGTLFSR 196

Query:   120 QN 121
             ++
Sbjct:   197 KD 198

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2051698 IDD5 "AT2G02070" [Arabidopsis thaliana (taxid:3702)]

 Score = 566 (204.3 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
 Identities = 93/121 (76%), Positives = 111/121 (91%)

Query:     1 MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPS 60
             MATNR+ICEVC+KGFQR+QNLQLHR+GHNLPWKL Q+ T +VK+ VY+CP+P+CVHH PS
Sbjct:    76 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEVKRKVYLCPEPSCVHHDPS 135

Query:    61 RALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCDCGIIFSSQ 120
             RALGDLTG+KKH+ RKHGEKKWKCDKCSK YAVQSDWKAH+K CGT+E+RCDCG +FS +
Sbjct:   136 RALGDLTGIKKHYYRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTKEYRCDCGTLFSRR 195

Query:   121 N 121
             +
Sbjct:   196 D 196

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006417 "regulation of translation" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2167608 NUC "AT5G44160" [Arabidopsis thaliana (taxid:3702)]

 Score = 565 (203.9 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
 Identities = 94/121 (77%), Positives = 108/121 (89%)

Query:     1 MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPS 60
             MATNR++CEVC KGFQRDQNLQLHR+GHNLPWKL QR + +V+K VYVCP+  CVHHH S
Sbjct:    61 MATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHSS 120

Query:    61 RALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCDCGIIFSSQ 120
             RALGDLTG+KKHFCRKHGEKKW C+KC+K YAVQSDWKAH+K CGTRE+RCDCG IFS +
Sbjct:   121 RALGDLTGIKKHFCRKHGEKKWTCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRR 180

Query:   121 N 121
             +
Sbjct:   181 D 181

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0010260 "organ senescence" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0048573 "photoperiodism, flowering" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2205672 IDD7 "AT1G55110" [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 2.9e-58, Sum P(2) = 2.9e-58
 Identities = 94/122 (77%), Positives = 108/122 (88%)

Query:     1 MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQV-KKGVYVCPKPNCVHHHP 59
             MATNR+ICEVC+KGFQRDQNLQLH++GHNLPWKL QR    V +K VYVCP+P CVHHHP
Sbjct:    87 MATNRFICEVCNKGFQRDQNLQLHKRGHNLPWKLKQRSNKDVVRKKVYVCPEPGCVHHHP 146

Query:    60 SRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCDCGIIFSS 119
             SRALGDLTG+KKHF RKHGEKKWKC+KCSK YAVQSDWKAH K CGT+E++CDCG +FS 
Sbjct:   147 SRALGDLTGIKKHFFRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTKEYKCDCGTLFSR 206

Query:   120 QN 121
             ++
Sbjct:   207 RD 208

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2078262 AT3G45260 "AT3G45260" [Arabidopsis thaliana (taxid:3702)]

 Score = 551 (199.0 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
 Identities = 93/122 (76%), Positives = 107/122 (87%)

Query:     1 MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTT-QVKKGVYVCPKPNCVHHHP 59
             M TNR+ICEVC+KGF+RDQNLQLHR+GHNLPWKL QR    QVKK VY+CP+  CVHH P
Sbjct:    63 MTTNRFICEVCNKGFKRDQNLQLHRRGHNLPWKLKQRTNKEQVKKKVYICPEKTCVHHDP 122

Query:    60 SRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCDCGIIFSS 119
             +RALGDLTG+KKHF RKHGEKKWKCDKCSK YAV SDWKAH+KICGT+E+RCDCG +FS 
Sbjct:   123 ARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVMSDWKAHSKICGTKEYRCDCGTLFSR 182

Query:   120 QN 121
             ++
Sbjct:   183 KD 184

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2204503 AT1G14580 "AT1G14580" [Arabidopsis thaliana (taxid:3702)]

 Score = 555 (200.4 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
 Identities = 90/121 (74%), Positives = 110/121 (90%)

Query:     1 MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPS 60
             MATNR++CEVC+KGFQR+QNLQLHR+GHNLPWKL Q+   +V++ VY+CP+P+CVHH P+
Sbjct:    77 MATNRFLCEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEVRRKVYLCPEPSCVHHDPA 136

Query:    61 RALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCDCGIIFSSQ 120
             RALGDLTG+KKH+ RKHGEKKWKCDKCSK YAVQSDWKAH+K CGT+E+RCDCG IFS +
Sbjct:   137 RALGDLTGIKKHYYRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTKEYRCDCGTIFSRR 196

Query:   121 N 121
             +
Sbjct:   197 D 197

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029729001 SubName- Full=Chromosome chr9 scaffold_49, whole genome shotgun sequence; (394 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	332
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.92
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.92
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.82
KOG3608	467	consensus Zn finger proteins [General function pre	99.8
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.76
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.76
KOG3608	467	consensus Zn finger proteins [General function pre	99.67
KOG3576	267	consensus Ovo and related transcription factors [T	99.59
KOG3576	267	consensus Ovo and related transcription factors [T	99.53
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.4
PLN03086	567	PRLI-interacting factor K; Provisional	99.15
PLN03086	567	PRLI-interacting factor K; Provisional	98.91
PHA00733	128	hypothetical protein	98.89
PHA00733	128	hypothetical protein	98.73
KOG3993	500	consensus Transcription factor (contains Zn finger	98.53
PHA02768	55	hypothetical protein; Provisional	98.44
PHA02768	55	hypothetical protein; Provisional	98.4
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.29
PHA00616	44	hypothetical protein	97.92
PHA00616	44	hypothetical protein	97.85
KOG3993	500	consensus Transcription factor (contains Zn finger	97.82
PHA00732	79	hypothetical protein	97.8
PHA00732	79	hypothetical protein	97.74
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	97.71
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.67
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.47
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.33
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.22
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.14
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.13
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.05
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	96.98
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.73
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.42
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.33
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.17
smart00355	26	ZnF_C2H2 zinc finger.	96.17
COG5048	467	FOG: Zn-finger [General function prediction only]	95.71
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	95.62
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	95.57
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	95.24
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	94.76
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	94.59
PRK04860	160	hypothetical protein; Provisional	94.55
KOG1146	1406	consensus Homeobox protein [General function predi	94.49
PRK04860	160	hypothetical protein; Provisional	93.93
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	93.88
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	93.71
smart00355	26	ZnF_C2H2 zinc finger.	93.54
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	92.69
COG5236	493	Uncharacterized conserved protein, contains RING Z	92.14
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	90.66
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	90.31
COG5048	467	FOG: Zn-finger [General function prediction only]	90.08
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	89.7
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	88.22
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	87.13
KOG2893	341	consensus Zn finger protein [General function pred	86.27
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	85.1
KOG4173	253	consensus Alpha-SNAP protein [Intracellular traffi	84.92
COG4049	65	Uncharacterized protein containing archaeal-type C	84.86
KOG1146	1406	consensus Homeobox protein [General function predi	84.19
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	81.02
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	80.81
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	80.05

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.92  E-value=1.5e-26  Score=198.78  Aligned_cols=132  Identities=20%  Similarity=0.370  Sum_probs=105.1

Q ss_pred             CCcceecCCCCCCCCCCCCccCChhhHhhhhccccC---CCccccccChhhhcCchhhHHHHHHhCCCCeeee-cCCccc
Q 038715           43 KKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHG---EKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCD-CGIIFS  118 (332)
Q Consensus        43 ~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~---ek~~~C~~C~~~f~~~~~L~~H~~~h~~k~~~C~-C~k~f~  118 (332)
                      ....|+|+.|       ++.+.+.++|.+|+++|..   .+.+.|.+|++.|.+...|+.|+++|. -+.+|. |||.|+
T Consensus       127 ~~~r~~c~eC-------gk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~-l~c~C~iCGKaFS  198 (279)
T KOG2462|consen  127 KHPRYKCPEC-------GKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT-LPCECGICGKAFS  198 (279)
T ss_pred             cCCceecccc-------ccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC-CCccccccccccc
Confidence            4456778887       8888888888888877753   456888888888888888888888853 678887 888888


Q ss_pred             cchhHhhcCCccchhhhhccCCCCccCCCCcccccCCCCcccccccCCCCceecccccccccCcccccccccC---CCCc
Q 038715          119 SQNLAASGGMAQSQAQELFSSSMPSTDSDSNTNIRMNPSISRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPY  195 (332)
Q Consensus       119 ~~~~l~~h~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~  195 (332)
                      +..+|+.                                  |.|+|+|||||.|+.|+|+|..+++|+.||++   .|+|
T Consensus       199 RPWLLQG----------------------------------HiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~  244 (279)
T KOG2462|consen  199 RPWLLQG----------------------------------HIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKH  244 (279)
T ss_pred             chHHhhc----------------------------------ccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccc
Confidence            8888873                                  88888888888888888888888888888888   7788


Q ss_pred             cCCCCCCCcccccccccccChhHHHHHHHH
Q 038715          196 LSSVCGSNACAMAIGSSFTSSTALLQKAAE  225 (332)
Q Consensus       196 ~C~~C~~~~~~~~~~~~f~~~~~L~~H~~~  225 (332)
                      +|..|+         ++|...+-|.+|...
T Consensus       245 qC~~C~---------KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  245 QCPRCG---------KSFALKSYLNKHSES  265 (279)
T ss_pred             cCcchh---------hHHHHHHHHHHhhhh
Confidence            888888         888888888888653

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.92  E-value=3.4e-26  Score=196.65  Aligned_cols=115  Identities=15%  Similarity=0.269  Sum_probs=101.4

Q ss_pred             cccCcccc---CCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCe
Q 038715           34 LMQRPTTQ---VKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREH  109 (332)
Q Consensus        34 l~~~~~~~---~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~  109 (332)
                      |..|+..|   ...+.+.|+.|       ++.|.....|+.|+++|+  -+++|.+|||.|.+...|+-|+|+ +|||||
T Consensus       146 LsrHkQ~H~~~~s~ka~~C~~C-------~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF  216 (279)
T KOG2462|consen  146 LSRHKQTHRSLDSKKAFSCKYC-------GKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHIRTHTGEKPF  216 (279)
T ss_pred             cchhhcccccccccccccCCCC-------CceeeehHHHhhHhhccC--CCcccccccccccchHHhhcccccccCCCCc
Confidence            44555554   23677899999       999999999999999998  579999999999999999999999 699999


Q ss_pred             eee-cCCccccchhHhhcCCccchhhhhccCCCCccCCCCcccccCCCCcccccccCCCCceecccccccccCccccccc
Q 038715          110 RCD-CGIIFSSQNLAASGGMAQSQAQELFSSSMPSTDSDSNTNIRMNPSISRDNIENSLRPLSMSSVGVMVSSNLDPILT  188 (332)
Q Consensus       110 ~C~-C~k~f~~~~~l~~h~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H  188 (332)
                      .|. |++.|+.+++|+.                                  |+.+|.+.|+|+|..|+|+|..++.|.+|
T Consensus       217 ~C~hC~kAFADRSNLRA----------------------------------HmQTHS~~K~~qC~~C~KsFsl~SyLnKH  262 (279)
T KOG2462|consen  217 SCPHCGKAFADRSNLRA----------------------------------HMQTHSDVKKHQCPRCGKSFALKSYLNKH  262 (279)
T ss_pred             cCCcccchhcchHHHHH----------------------------------HHHhhcCCccccCcchhhHHHHHHHHHHh
Confidence            998 9999999999985                                  88899999999999999999999999999


Q ss_pred             ccC
Q 038715          189 SRV  191 (332)
Q Consensus       189 ~~~  191 (332)
                      ...
T Consensus       263 ~ES  265 (279)
T KOG2462|consen  263 SES  265 (279)
T ss_pred             hhh
Confidence            876

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.82  E-value=9.9e-22  Score=186.89  Aligned_cols=75  Identities=12%  Similarity=0.119  Sum_probs=68.0

Q ss_pred             CCCccCCCCccccc-CCCCcccccccCCCCceecccccccccCcccccccccC---CCCccCCCCCCCcccccccccccC
Q 038715          140 SMPSTDSDSNTNIR-MNPSISRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVCGSNACAMAIGSSFTS  215 (332)
Q Consensus       140 ~~~~~c~~c~~~f~-~~~~~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C~~~~~~~~~~~~f~~  215 (332)
                      +-+|.|+.|+|.|. .+++.+|.--|+|.|||+|.+|.|+|..+..|..|+|.   +|||+|+.|+         +.|..
T Consensus       892 ~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKCl---------KRFSH  962 (1007)
T KOG3623|consen  892 DGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCL---------KRFSH  962 (1007)
T ss_pred             cccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhh---------hhccc
Confidence            34699999999997 66668899999999999999999999999999999999   9999999999         77777


Q ss_pred             hhHHHHHH
Q 038715          216 STALLQKA  223 (332)
Q Consensus       216 ~~~L~~H~  223 (332)
                      ..+.-+|+
T Consensus       963 SGSYSQHM  970 (1007)
T KOG3623|consen  963 SGSYSQHM  970 (1007)
T ss_pred             ccchHhhh
Confidence            77777885

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.80  E-value=6.1e-21  Score=168.28  Aligned_cols=208  Identities=17%  Similarity=0.243  Sum_probs=142.8

Q ss_pred             eec--ccccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccc
Q 038715            6 YIC--EVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWK   83 (332)
Q Consensus         6 ~~C--~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~   83 (332)
                      |.|  +.|++.|.+...|..|+..|..-.............-.+.|.|-+|     .+.+.++..|.+|.+.|++||...
T Consensus       135 f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~C-----t~~~~~k~~LreH~r~Hs~eKvvA  209 (467)
T KOG3608|consen  135 FRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMC-----TKHMGNKYRLREHIRTHSNEKVVA  209 (467)
T ss_pred             hccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhh-----hhhhccHHHHHHHHHhcCCCeEEe
Confidence            556  5899999999999999988862111111111111223456776555     677777777777777777777777


Q ss_pred             cccChhhhcCchhhHHHHHH-h--CCCCeeee-cCCccccchhHhhcCCcc--------------------chhhhhccC
Q 038715           84 CDKCSKCYAVQSDWKAHTKI-C--GTREHRCD-CGIIFSSQNLAASGGMAQ--------------------SQAQELFSS  139 (332)
Q Consensus        84 C~~C~~~f~~~~~L~~H~~~-h--~~k~~~C~-C~k~f~~~~~l~~h~~~~--------------------~~~~~~~~~  139 (332)
                      |+.|+..|+++..|..|.++ +  ...+|.|. |.|.|.+..+|..|.+.|                    ....-.|+.
T Consensus       210 Cp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCdmtc~~~ssL~~H~r~rHs~  289 (467)
T KOG3608|consen  210 CPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCDMTCSSASSLTTHIRYRHSK  289 (467)
T ss_pred             cchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhcccccccccCCCChHHHHHHHHhhhcc
Confidence            77777777777777777776 3  45677776 777777766666554322                    112234667


Q ss_pred             CCCccCCCCcccccCC-CCcccccccCCCCceeccc--ccccccCcccccccccC------CCCccCCCCCCCccccccc
Q 038715          140 SMPSTDSDSNTNIRMN-PSISRDNIENSLRPLSMSS--VGVMVSSNLDPILTSRV------SKPYLSSVCGSNACAMAIG  210 (332)
Q Consensus       140 ~~~~~c~~c~~~f~~~-~~~~h~~~h~~~k~~~C~~--C~k~F~~~~~L~~H~~~------~~p~~C~~C~~~~~~~~~~  210 (332)
                      ++||+|+.|++.+... .+.+|..+|+ +-.|+|..  |..+|++..+|++|++-      +.+|.|..|+         
T Consensus       290 dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cd---------  359 (467)
T KOG3608|consen  290 DKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCD---------  359 (467)
T ss_pred             CCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecch---------
Confidence            7888888888877633 3356777777 55788866  88888888888888665      6778888888         


Q ss_pred             ccccChhHHHHHHHHhcc
Q 038715          211 SSFTSSTALLQKAAEMGT  228 (332)
Q Consensus       211 ~~f~~~~~L~~H~~~~~~  228 (332)
                      +.|++-.+|..|+.+-+.
T Consensus       360 r~ft~G~~L~~HL~kkH~  377 (467)
T KOG3608|consen  360 RFFTSGKSLSAHLMKKHG  377 (467)
T ss_pred             hhhccchhHHHHHHHhhc
Confidence            888888888888765544

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.76  E-value=1.9e-19  Score=174.25  Aligned_cols=48  Identities=21%  Similarity=0.277  Sum_probs=45.1

Q ss_pred             cccccccccCcccccccccC---CCCccCCCCCCCcccccccccccChhHHHHHHHHhcc
Q 038715          172 MSSVGVMVSSNLDPILTSRV---SKPYLSSVCGSNACAMAIGSSFTSSTALLQKAAEMGT  228 (332)
Q Consensus       172 C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C~~~~~~~~~~~~f~~~~~L~~H~~~~~~  228 (332)
                      |.+|++.|...+.|..|+|+   +|||.|.+|+         +.|+.+.+|..|+..+.-
T Consensus       882 C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~---------~aFttrgnLKvHMgtH~w  932 (958)
T KOG1074|consen  882 CNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCE---------EAFTTRGNLKVHMGTHMW  932 (958)
T ss_pred             hccchhcccchHHHHHhhhcCCCCCCccchhhh---------hhhhhhhhhhhhhccccc
Confidence            99999999999999999999   9999999999         999999999999875543

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.76  E-value=6.4e-20  Score=177.43  Aligned_cols=78  Identities=13%  Similarity=0.084  Sum_probs=69.9

Q ss_pred             CCccCCCCccccc-CCCCcccccccCCCCceecccccccccCcccccccccC-------CCCccCC---CCCCCcccccc
Q 038715          141 MPSTDSDSNTNIR-MNPSISRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV-------SKPYLSS---VCGSNACAMAI  209 (332)
Q Consensus       141 ~~~~c~~c~~~f~-~~~~~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~-------~~p~~C~---~C~~~~~~~~~  209 (332)
                      -|-.|-+|.+... .+.+..|.|+|+|||||+|.+||++|.++.+|+.||-+       .-+|.|+   +|.        
T Consensus       604 dPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~--------  675 (958)
T KOG1074|consen  604 DPNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQ--------  675 (958)
T ss_pred             CccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhc--------
Confidence            3578999999998 66677799999999999999999999999999999888       5679999   999        


Q ss_pred             cccccChhHHHHHHHHhc
Q 038715          210 GSSFTSSTALLQKAAEMG  227 (332)
Q Consensus       210 ~~~f~~~~~L~~H~~~~~  227 (332)
                       +.|.....|.+|+..+.
T Consensus       676 -~kftn~V~lpQhIriH~  692 (958)
T KOG1074|consen  676 -KKFTNAVTLPQHIRIHL  692 (958)
T ss_pred             -ccccccccccceEEeec
Confidence             99999999999987643

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.67  E-value=4.6e-18  Score=150.23  Aligned_cols=165  Identities=14%  Similarity=0.176  Sum_probs=119.5

Q ss_pred             cccccccChhHHHHHHHhcCCCccc-----------------ccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhh
Q 038715           10 VCHKGFQRDQNLQLHRKGHNLPWKL-----------------MQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKH   72 (332)
Q Consensus        10 ~C~k~f~~~~~L~~H~~~h~~~~~l-----------------~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H   72 (332)
                      .|-+.|.++..|++|++.|++...+                 ..+.++.....+|.|..|       .+.|.+...|..|
T Consensus       184 ~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C-------~KrFaTeklL~~H  256 (467)
T KOG3608|consen  184 MCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQC-------FKRFATEKLLKSH  256 (467)
T ss_pred             hhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHH-------HHHHhHHHHHHHH
Confidence            4666666677777777666622110                 001111123446667666       6777777777777


Q ss_pred             hccccCCCccccccChhhhcCchhhHHHHHH-h-CCCCeeee-cCCccccchhHhhcCCccchhhhhccCCCCccCCC--
Q 038715           73 FCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-C-GTREHRCD-CGIIFSSQNLAASGGMAQSQAQELFSSSMPSTDSD--  147 (332)
Q Consensus        73 ~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h-~~k~~~C~-C~k~f~~~~~l~~h~~~~~~~~~~~~~~~~~~c~~--  147 (332)
                      +..|..  -|+|+.|+......++|..|++. | .+|||+|+ |++.|.+.+.|..       |..+|+ +..|.|..  
T Consensus       257 v~rHvn--~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~k-------H~~~HS-~~~y~C~h~~  326 (467)
T KOG3608|consen  257 VVRHVN--CYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAK-------HVQVHS-KTVYQCEHPD  326 (467)
T ss_pred             HHHhhh--cccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHH-------HHHhcc-ccceecCCCC
Confidence            766653  48899999988999999999998 7 78999999 9999999999984       666777 77899987  


Q ss_pred             Cccccc-CCCCcccccccC-C--CCceecccccccccCcccccccccC
Q 038715          148 SNTNIR-MNPSISRDNIEN-S--LRPLSMSSVGVMVSSNLDPILTSRV  191 (332)
Q Consensus       148 c~~~f~-~~~~~~h~~~h~-~--~k~~~C~~C~k~F~~~~~L~~H~~~  191 (332)
                      |...++ .....+|.+.+. +  +-+|.|..|++.|++..+|.+|++.
T Consensus       327 C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~k  374 (467)
T KOG3608|consen  327 CHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMK  374 (467)
T ss_pred             CcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHHHHHHH
Confidence            777776 444456765433 3  4589999999999999999999776

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.59  E-value=4.4e-16  Score=128.00  Aligned_cols=102  Identities=24%  Similarity=0.493  Sum_probs=93.1

Q ss_pred             CCceecccccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcc
Q 038715            3 TNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKW   82 (332)
Q Consensus         3 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~   82 (332)
                      ...|.|.+|+|.|..+.-|.+|++.|.             ..+.|.|..|       |+.|.....|++|+++|+|.+||
T Consensus       115 ~d~ftCrvCgK~F~lQRmlnrh~kch~-------------~vkr~lct~c-------gkgfndtfdlkrh~rthtgvrpy  174 (267)
T KOG3576|consen  115 QDSFTCRVCGKKFGLQRMLNRHLKCHS-------------DVKRHLCTFC-------GKGFNDTFDLKRHTRTHTGVRPY  174 (267)
T ss_pred             CCeeeeehhhhhhhHHHHHHHHhhhcc-------------HHHHHHHhhc-------cCcccchhhhhhhhccccCcccc
Confidence            457999999999999999999999998             7889999999       99999999999999999999999


Q ss_pred             ccccChhhhcCchhhHHHHHH-hC-----------CCCeeee-cCCccccchhHh
Q 038715           83 KCDKCSKCYAVQSDWKAHTKI-CG-----------TREHRCD-CGIIFSSQNLAA  124 (332)
Q Consensus        83 ~C~~C~~~f~~~~~L~~H~~~-h~-----------~k~~~C~-C~k~f~~~~~l~  124 (332)
                      +|..|+++|...-+|..|.+. |+           +|.|.|+ ||..-.....+.
T Consensus       175 kc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~  229 (267)
T KOG3576|consen  175 KCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYY  229 (267)
T ss_pred             chhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHH
Confidence            999999999999999999998 85           4678998 998887765555

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.53  E-value=1.2e-15  Score=125.50  Aligned_cols=109  Identities=17%  Similarity=0.276  Sum_probs=86.6

Q ss_pred             CCccccccChhhhcCchhhHHHHHHh-CCCCeeee-cCCccccchhHhhcCCccchhhhhccCCCCccCCCCcccccCCC
Q 038715           79 EKKWKCDKCSKCYAVQSDWKAHTKIC-GTREHRCD-CGIIFSSQNLAASGGMAQSQAQELFSSSMPSTDSDSNTNIRMNP  156 (332)
Q Consensus        79 ek~~~C~~C~~~f~~~~~L~~H~~~h-~~k~~~C~-C~k~f~~~~~l~~h~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~  156 (332)
                      ...|.|.+|++.|.-..-|.+|++-| ..|.|-|. |||.|...-.|+                                
T Consensus       115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlk--------------------------------  162 (267)
T KOG3576|consen  115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLK--------------------------------  162 (267)
T ss_pred             CCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhh--------------------------------
Confidence            34577777777777777777777764 44566676 777777666665                                


Q ss_pred             CcccccccCCCCceecccccccccCcccccccccC--------------CCCccCCCCCCCcccccccccccChhHHHHH
Q 038715          157 SISRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV--------------SKPYLSSVCGSNACAMAIGSSFTSSTALLQK  222 (332)
Q Consensus       157 ~~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~--------------~~p~~C~~C~~~~~~~~~~~~f~~~~~L~~H  222 (332)
                        +|.|+|+|.|||+|..|+|+|+++-+|..|.+.              .+.|.|+.||         ..-.....+..|
T Consensus       163 --rh~rthtgvrpykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg---------~t~~~~e~~~~h  231 (267)
T KOG3576|consen  163 --RHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCG---------YTSERPEVYYLH  231 (267)
T ss_pred             --hhhccccCccccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccC---------CCCCChhHHHHH
Confidence              499999999999999999999999999999664              7889999999         777778888889


Q ss_pred             HHHhcccc
Q 038715          223 AAEMGTMM  230 (332)
Q Consensus       223 ~~~~~~~~  230 (332)
                      ++.+++..
T Consensus       232 ~~~~hp~S  239 (267)
T KOG3576|consen  232 LKLHHPFS  239 (267)
T ss_pred             HHhcCCCC
Confidence            88877654

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.40  E-value=6.5e-14  Score=134.18  Aligned_cols=80  Identities=28%  Similarity=0.576  Sum_probs=58.3

Q ss_pred             CCceecccccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcc
Q 038715            3 TNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKW   82 (332)
Q Consensus         3 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~   82 (332)
                      +-.|.|+.|+|.|...+.|.+|.-.|+             +++||.|.+|       .+.|+.+..|..|+|.|.|||||
T Consensus       892 ~gmyaCDqCDK~FqKqSSLaRHKYEHs-------------GqRPyqC~iC-------kKAFKHKHHLtEHkRLHSGEKPf  951 (1007)
T KOG3623|consen  892 DGMYACDQCDKAFQKQSSLARHKYEHS-------------GQRPYQCIIC-------KKAFKHKHHLTEHKRLHSGEKPF  951 (1007)
T ss_pred             cccchHHHHHHHHHhhHHHHHhhhhhc-------------CCCCcccchh-------hHhhhhhhhhhhhhhhccCCCcc
Confidence            345777777777777777777777776             7777777777       77777777777777777777777


Q ss_pred             ccccChhhhcCchhhHHHHH
Q 038715           83 KCDKCSKCYAVQSDWKAHTK  102 (332)
Q Consensus        83 ~C~~C~~~f~~~~~L~~H~~  102 (332)
                      +|+.|+|+|....+..+||-
T Consensus       952 QCdKClKRFSHSGSYSQHMN  971 (1007)
T KOG3623|consen  952 QCDKCLKRFSHSGSYSQHMN  971 (1007)
T ss_pred             hhhhhhhhcccccchHhhhc
Confidence            77777777777777777665

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.15  E-value=4.9e-11  Score=115.16  Aligned_cols=60  Identities=15%  Similarity=0.128  Sum_probs=45.7

Q ss_pred             ccccccCCCCceecccccccccC----------cccccccccC--CCCccCCCCCCCcccccccccccChhHHHHHHHHh
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSS----------NLDPILTSRV--SKPYLSSVCGSNACAMAIGSSFTSSTALLQKAAEM  226 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~----------~~~L~~H~~~--~~p~~C~~C~~~~~~~~~~~~f~~~~~L~~H~~~~  226 (332)
                      .|.++|.+++|+.|..|++.|..          .+.|..|..+  .+++.|..|+         +.++. ..|..|.-..
T Consensus       494 ~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cg---------k~Vrl-rdm~~H~~~~  563 (567)
T PLN03086        494 QHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCG---------RSVML-KEMDIHQIAV  563 (567)
T ss_pred             hhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhcCCcceEccccC---------Ceeee-hhHHHHHHHh
Confidence            48888899999999999999852          3478899888  8999999999         55554 3456666555


Q ss_pred             cc
Q 038715          227 GT  228 (332)
Q Consensus       227 ~~  228 (332)
                      +.
T Consensus       564 h~  565 (567)
T PLN03086        564 HQ  565 (567)
T ss_pred             hc
Confidence            44

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.91  E-value=1.8e-09  Score=104.44  Aligned_cols=53  Identities=23%  Similarity=0.463  Sum_probs=27.1

Q ss_pred             CCccCChhhHhhhhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCeeee-cCCcc
Q 038715           60 SRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRCD-CGIIF  117 (332)
Q Consensus        60 ~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C~-C~k~f  117 (332)
                      ++.|. ...|..|+..|+  +++.|+ |++.+ .+..|..|+.. +..+++.|. |++.|
T Consensus       460 gk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v  514 (567)
T PLN03086        460 GQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMV  514 (567)
T ss_pred             CCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCcc
Confidence            55553 344555555543  455555 55433 34555555554 355555555 55555

>PHA00733 hypothetical protein

Probab=98.89  E-value=4.3e-10  Score=89.23  Aligned_cols=56  Identities=16%  Similarity=0.271  Sum_probs=51.0

Q ss_pred             CCCCceecccccccccCcccccccccC-CCCccCCCCCCCcccccccccccChhHHHHHHHHhccc
Q 038715          165 NSLRPLSMSSVGVMVSSNLDPILTSRV-SKPYLSSVCGSNACAMAIGSSFTSSTALLQKAAEMGTM  229 (332)
Q Consensus       165 ~~~k~~~C~~C~k~F~~~~~L~~H~~~-~~p~~C~~C~~~~~~~~~~~~f~~~~~L~~H~~~~~~~  229 (332)
                      .+++||.|+.|++.|.+...|..|++. +.+|.|++|+         +.|....+|..|+++.+..
T Consensus        69 ~~~kPy~C~~Cgk~Fss~s~L~~H~r~h~~~~~C~~Cg---------K~F~~~~sL~~H~~~~h~~  125 (128)
T PHA00733         69 KAVSPYVCPLCLMPFSSSVSLKQHIRYTEHSKVCPVCG---------KEFRNTDSTLDHVCKKHNI  125 (128)
T ss_pred             CCCCCccCCCCCCcCCCHHHHHHHHhcCCcCccCCCCC---------CccCCHHHHHHHHHHhcCc
Confidence            347899999999999999999999997 7889999999         9999999999999988753

>PHA00733 hypothetical protein

Probab=98.73  E-value=8e-09  Score=81.96  Aligned_cols=51  Identities=22%  Similarity=0.316  Sum_probs=27.2

Q ss_pred             CcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccChhhhcCchhhHHHHHH
Q 038715           44 KGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI  103 (332)
Q Consensus        44 ~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~  103 (332)
                      .++|.|+.|       ++.|.....|..|++.|  +.+|.|+.|++.|.....|..|+..
T Consensus        71 ~kPy~C~~C-------gk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL~~H~~~  121 (128)
T PHA00733         71 VSPYVCPLC-------LMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDSTLDHVCK  121 (128)
T ss_pred             CCCccCCCC-------CCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHHHHHHHH
Confidence            445555555       55555555555555544  2345555555555555555555554

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.53  E-value=6.3e-08  Score=88.48  Aligned_cols=195  Identities=14%  Similarity=0.168  Sum_probs=102.3

Q ss_pred             eecccccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccc--
Q 038715            6 YICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWK--   83 (332)
Q Consensus         6 ~~C~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~--   83 (332)
                      |.|..|-..|.+...|.+|.=.-.             ....|+|++|       ++.|....+|..|.|+|.-...-.  
T Consensus       268 yiCqLCK~kYeD~F~LAQHrC~RI-------------V~vEYrCPEC-------~KVFsCPANLASHRRWHKPR~eaa~a  327 (500)
T KOG3993|consen  268 YICQLCKEKYEDAFALAQHRCPRI-------------VHVEYRCPEC-------DKVFSCPANLASHRRWHKPRPEAAKA  327 (500)
T ss_pred             HHHHHHHHhhhhHHHHhhccCCee-------------EEeeecCCcc-------cccccCchhhhhhhcccCCchhhhhc
Confidence            778888888888888888852221             3346888888       888888888888888875211000  


Q ss_pred             -cccChhhhcCchhhHHHHHH---hCCCCeeee-cCCccccchhHhhcCCccchhhhhccCC----------CCccCCCC
Q 038715           84 -CDKCSKCYAVQSDWKAHTKI---CGTREHRCD-CGIIFSSQNLAASGGMAQSQAQELFSSS----------MPSTDSDS  148 (332)
Q Consensus        84 -C~~C~~~f~~~~~L~~H~~~---h~~k~~~C~-C~k~f~~~~~l~~h~~~~~~~~~~~~~~----------~~~~c~~c  148 (332)
                       -+.=.+.-.+....+.-.+.   ..+..|.|. |+|.|.++..|+.|+..|.+....-...          ..+-+..+
T Consensus       328 ~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~  407 (500)
T KOG3993|consen  328 GSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAV  407 (500)
T ss_pred             CCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhccccccccccc
Confidence             00000000000000000000   011235555 6666665555555433322211111000          11222333


Q ss_pred             cccccCCCC-cccccccCC-CCceecccccccccCcccccccccC---CCCccCCCCCCCcccccccccccChhHHHHHH
Q 038715          149 NTNIRMNPS-ISRDNIENS-LRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVCGSNACAMAIGSSFTSSTALLQKA  223 (332)
Q Consensus       149 ~~~f~~~~~-~~h~~~h~~-~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C~~~~~~~~~~~~f~~~~~L~~H~  223 (332)
                      ...+..... -.+.-.+.+ .....|+.|+--+.++..--.|.+.   +.-|.|.+|.         ..|.+...|.+|+
T Consensus       408 a~h~~a~~~~g~~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~---------atfyss~~ltrhi  478 (500)
T KOG3993|consen  408 ATHSSASDSHGDEVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCP---------ATFYSSPGLTRHI  478 (500)
T ss_pred             ccccccccccccceeeeeccccccCCCCCCCCcccCCCCCccccccchhhccccccch---------HhhhcCcchHhHh
Confidence            332221111 111111111 2234578888888888877777766   8888899999         8888888888887


Q ss_pred             HHhccc
Q 038715          224 AEMGTM  229 (332)
Q Consensus       224 ~~~~~~  229 (332)
                      ...|..
T Consensus       479 n~~Hps  484 (500)
T KOG3993|consen  479 NKCHPS  484 (500)
T ss_pred             hhcChH
Confidence            766643

>PHA02768 hypothetical protein; Provisional

Probab=98.44  E-value=6.9e-08  Score=63.60  Aligned_cols=35  Identities=9%  Similarity=0.179  Sum_probs=18.4

Q ss_pred             CCccCChhhHhhhhccccCCCccccccChhhhcCchh
Q 038715           60 SRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSD   96 (332)
Q Consensus        60 ~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~   96 (332)
                      ++.|...+.|..|+++|+  ++|+|..|++.|...+.
T Consensus        12 GK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~   46 (55)
T PHA02768         12 GEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGE   46 (55)
T ss_pred             CCeeccHHHHHHHHHhcC--CcccCCcccceecccce
Confidence            555555555555555554  34555555555554443

>PHA02768 hypothetical protein; Provisional

Probab=98.40  E-value=1.7e-07  Score=61.78  Aligned_cols=47  Identities=17%  Similarity=0.202  Sum_probs=41.1

Q ss_pred             CCCceecccccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHh
Q 038715            2 ATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVK   70 (332)
Q Consensus         2 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~   70 (332)
                      +---|+|+.||+.|.+..+|..|++.|.               ++|+|..|       ++.|...+.|.
T Consensus         2 ~~~~y~C~~CGK~Fs~~~~L~~H~r~H~---------------k~~kc~~C-------~k~f~~~s~l~   48 (55)
T PHA02768          2 ALLGYECPICGEIYIKRKSMITHLRKHN---------------TNLKLSNC-------KRISLRTGEYI   48 (55)
T ss_pred             cccccCcchhCCeeccHHHHHHHHHhcC---------------CcccCCcc-------cceecccceeE
Confidence            4456999999999999999999999994               58899999       99998877664

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.29  E-value=2e-07  Score=52.35  Aligned_cols=25  Identities=32%  Similarity=0.844  Sum_probs=19.7

Q ss_pred             hHhhhhccccCCCccccccChhhhc
Q 038715           68 GVKKHFCRKHGEKKWKCDKCSKCYA   92 (332)
Q Consensus        68 ~L~~H~~~h~~ek~~~C~~C~~~f~   92 (332)
                      +|..|+++|++++||.|+.|++.|.
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence            4677888888888888888888775

...

>PHA00616 hypothetical protein

Probab=97.92  E-value=3.9e-06  Score=52.64  Aligned_cols=34  Identities=18%  Similarity=0.268  Sum_probs=30.6

Q ss_pred             ceecccccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCC
Q 038715            5 RYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPK   51 (332)
Q Consensus         5 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~   51 (332)
                      ||+|+.||+.|..+++|..|++.|+             +++++.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~h-------------g~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVH-------------KQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhc-------------CCCccceeE
Confidence            7999999999999999999999998             778877754

>PHA00616 hypothetical protein

Probab=97.85  E-value=9.1e-06  Score=50.98  Aligned_cols=32  Identities=9%  Similarity=0.267  Sum_probs=18.2

Q ss_pred             ccccccChhhhcCchhhHHHHHH-hCCCCeeee
Q 038715           81 KWKCDKCSKCYAVQSDWKAHTKI-CGTREHRCD  112 (332)
Q Consensus        81 ~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C~  112 (332)
                      ||+|..||+.|..+++|..|++. |+++++.|+
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~   33 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE   33 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence            35555556666555556555555 555555543

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=97.82  E-value=2.5e-06  Score=78.30  Aligned_cols=110  Identities=14%  Similarity=0.184  Sum_probs=72.0

Q ss_pred             CcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccChhhhcCchhhHHHHHHhCCCCeee--e--cCC-ccc
Q 038715           44 KGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRC--D--CGI-IFS  118 (332)
Q Consensus        44 ~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~h~~k~~~C--~--C~k-~f~  118 (332)
                      ...|.|..|       ...|.+...|.+|.....-.--|+|++|+|.|.-..+|..|.|.|..++-.-  .  =.+ ...
T Consensus       265 iGdyiCqLC-------K~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~  337 (500)
T KOG3993|consen  265 IGDYICQLC-------KEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVE  337 (500)
T ss_pred             HHHHHHHHH-------HHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhh
Confidence            346999999       9999999999999865554455999999999999999999999885443211  0  000 011


Q ss_pred             cchhHhhcCCccchhhhhccCCCCccCCCCccccc-CCCCcccccccC
Q 038715          119 SQNLAASGGMAQSQAQELFSSSMPSTDSDSNTNIR-MNPSISRDNIEN  165 (332)
Q Consensus       119 ~~~~l~~h~~~~~~~~~~~~~~~~~~c~~c~~~f~-~~~~~~h~~~h~  165 (332)
                      .+...+...+     .-..+.+-.|.|.+|++.|+ ...+.+|+.+|.
T Consensus       338 ~rae~~ea~r-----sg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq  380 (500)
T KOG3993|consen  338 TRAEVQEAER-----SGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQ  380 (500)
T ss_pred             hhhhhhhccc-----cCCcccCceeecHHhhhhhHHHHHHHHhHHhhh
Confidence            1111110000     00113445799999999997 444466766554

>PHA00732 hypothetical protein

Probab=97.80  E-value=6.2e-06  Score=59.50  Aligned_cols=43  Identities=16%  Similarity=0.143  Sum_probs=33.7

Q ss_pred             ceecccccccccCcccccccccC-CCCccCCCCCCCcccccccccccChhHHHHHH
Q 038715          169 PLSMSSVGVMVSSNLDPILTSRV-SKPYLSSVCGSNACAMAIGSSFTSSTALLQKA  223 (332)
Q Consensus       169 ~~~C~~C~k~F~~~~~L~~H~~~-~~p~~C~~C~~~~~~~~~~~~f~~~~~L~~H~  223 (332)
                      ||.|..|++.|.+..+|..|++. ..++.|+.|+         +.|.   .|..|.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~~~C~~Cg---------KsF~---~l~~H~   44 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTLTKCPVCN---------KSYR---RLNQHF   44 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCCCccCCCC---------CEeC---Chhhhh
Confidence            57888888888888888888874 6677888888         7775   466665

>PHA00732 hypothetical protein

Probab=97.74  E-value=2.3e-05  Score=56.52  Aligned_cols=47  Identities=19%  Similarity=0.417  Sum_probs=33.8

Q ss_pred             ceecccccccccChhHHHHHHHh-cCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhcccc
Q 038715            5 RYICEVCHKGFQRDQNLQLHRKG-HNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKH   77 (332)
Q Consensus         5 ~~~C~~C~k~f~~~~~L~~H~~~-h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~   77 (332)
                      ||+|+.|++.|.+...|+.|++. |.                ++.|+.|       ++.|.   .|..|..++.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~----------------~~~C~~C-------gKsF~---~l~~H~~~~~   48 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT----------------LTKCPVC-------NKSYR---RLNQHFYSQY   48 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC----------------CCccCCC-------CCEeC---ChhhhhcccC
Confidence            57788888888888888888774 42                2468888       78776   4777775554

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=97.71  E-value=2.1e-05  Score=44.09  Aligned_cols=25  Identities=28%  Similarity=0.578  Sum_probs=22.8

Q ss_pred             HHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCCCCCCccC
Q 038715           20 NLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALG   64 (332)
Q Consensus        20 ~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~   64 (332)
                      +|.+|+++|+             ++++|.|+.|       ++.|.
T Consensus         1 ~l~~H~~~H~-------------~~k~~~C~~C-------~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHT-------------GEKPYKCPYC-------GKSFS   25 (26)
T ss_dssp             HHHHHHHHHS-------------SSSSEEESSS-------SEEES
T ss_pred             CHHHHhhhcC-------------CCCCCCCCCC-------cCeeC
Confidence            5889999998             9999999999       99886

...

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.67  E-value=2.8e-05  Score=42.09  Aligned_cols=23  Identities=39%  Similarity=0.873  Sum_probs=21.6

Q ss_pred             eecccccccccChhHHHHHHHhc
Q 038715            6 YICEVCHKGFQRDQNLQLHRKGH   28 (332)
Q Consensus         6 ~~C~~C~k~f~~~~~L~~H~~~h   28 (332)
                      |+|+.|++.|.++..|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            79999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.47  E-value=6.6e-05  Score=66.64  Aligned_cols=71  Identities=13%  Similarity=0.132  Sum_probs=45.6

Q ss_pred             CCCCeeee---cCCccccchhHhhcCCccchhhhhccCCCCccCCCCcccccCCCCcccccccCCCCceecccccccccC
Q 038715          105 GTREHRCD---CGIIFSSQNLAASGGMAQSQAQELFSSSMPSTDSDSNTNIRMNPSISRDNIENSLRPLSMSSVGVMVSS  181 (332)
Q Consensus       105 ~~k~~~C~---C~k~f~~~~~l~~h~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~~~h~~~h~~~k~~~C~~C~k~F~~  181 (332)
                      ++|||+|+   |.|.+.++.-|+-|...-++.+..|....|               ..+...-...|||.|++|+|.|..
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p---------------~~~~~F~~~~KPYrCevC~KRYKN  410 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSP---------------EKMNIFSAKDKPYRCEVCDKRYKN  410 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCc---------------cccccccccCCceeccccchhhcc
Confidence            34778883   888888877777655433333333322211               124444556789999999999998


Q ss_pred             ccccccccc
Q 038715          182 NLDPILTSR  190 (332)
Q Consensus       182 ~~~L~~H~~  190 (332)
                      ..-|+-|+.
T Consensus       411 lNGLKYHr~  419 (423)
T COG5189         411 LNGLKYHRK  419 (423)
T ss_pred             Cccceeccc
Confidence            888888864

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.33  E-value=7.7e-05  Score=66.25  Aligned_cols=26  Identities=27%  Similarity=0.638  Sum_probs=16.4

Q ss_pred             CcceecCCCCCCCCCCCCccCChhhHhhhhc
Q 038715           44 KGVYVCPKPNCVHHHPSRALGDLTGVKKHFC   74 (332)
Q Consensus        44 ~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~   74 (332)
                      ++||+|++-||     .+.++....|+-|+.
T Consensus       347 ~KpykCpV~gC-----~K~YknqnGLKYH~l  372 (423)
T COG5189         347 GKPYKCPVEGC-----NKKYKNQNGLKYHML  372 (423)
T ss_pred             CceecCCCCCc-----hhhhccccchhhhhh
Confidence            46666666655     666666666666653

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.22  E-value=0.00034  Score=46.65  Aligned_cols=22  Identities=23%  Similarity=0.427  Sum_probs=12.7

Q ss_pred             ceecccccccccChhHHHHHHHh
Q 038715            5 RYICEVCHKGFQRDQNLQLHRKG   27 (332)
Q Consensus         5 ~~~C~~C~k~f~~~~~L~~H~~~   27 (332)
                      .|.|+.|++ ..+...|..|...
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~   23 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCED   23 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHh
Confidence            366666666 3445566666443

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.14  E-value=0.00026  Score=39.87  Aligned_cols=25  Identities=28%  Similarity=0.635  Sum_probs=23.5

Q ss_pred             ceecccccccccChhHHHHHHHhcC
Q 038715            5 RYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         5 ~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      ||+|..|++.|.+...|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            6999999999999999999998884

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.13  E-value=0.00036  Score=37.78  Aligned_cols=23  Identities=30%  Similarity=0.821  Sum_probs=19.8

Q ss_pred             eecccccccccChhHHHHHHHhc
Q 038715            6 YICEVCHKGFQRDQNLQLHRKGH   28 (332)
Q Consensus         6 ~~C~~C~k~f~~~~~L~~H~~~h   28 (332)
                      |.|+.|++.|.+...|..|++.|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            78999999999999999999876

...

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.05  E-value=0.00024  Score=38.31  Aligned_cols=21  Identities=33%  Similarity=0.830  Sum_probs=11.2

Q ss_pred             cccccChhhhcCchhhHHHHH
Q 038715           82 WKCDKCSKCYAVQSDWKAHTK  102 (332)
Q Consensus        82 ~~C~~C~~~f~~~~~L~~H~~  102 (332)
                      |+|+.|++.|.++..|..|++
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~   21 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMR   21 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHh
Confidence            345555555555555555554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=96.98  E-value=0.00092  Score=44.55  Aligned_cols=49  Identities=18%  Similarity=0.278  Sum_probs=37.2

Q ss_pred             ceecCCCCCCCCCCCCccCChhhHhhhhcc-ccCC-CccccccChhhhcCchhhHHHHHH-h
Q 038715           46 VYVCPKPNCVHHHPSRALGDLTGVKKHFCR-KHGE-KKWKCDKCSKCYAVQSDWKAHTKI-C  104 (332)
Q Consensus        46 ~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~-h~~e-k~~~C~~C~~~f~~~~~L~~H~~~-h  104 (332)
                      .|.||+|       ++ ..+...|..|... |..+ +.+.|++|...+.  .+|..|+.. |
T Consensus         2 ~f~CP~C-------~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYC-------GK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCC-------CC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            4789999       88 4556789999654 4443 4699999998655  489999987 5

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.73  E-value=0.00093  Score=50.21  Aligned_cols=72  Identities=8%  Similarity=0.089  Sum_probs=23.1

Q ss_pred             cCCCCccccc-CCCCcccccccCCCCceecccccccccCcccccccccC--CCCccCCCCCCCcccccccccccChhHHH
Q 038715          144 TDSDSNTNIR-MNPSISRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV--SKPYLSSVCGSNACAMAIGSSFTSSTALL  220 (332)
Q Consensus       144 ~c~~c~~~f~-~~~~~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~--~~p~~C~~C~~~~~~~~~~~~f~~~~~L~  220 (332)
                      .|..|+..|. ...++.|+....+..   .+ ....+.....|..+.+.  ...+.|..|+         +.|.+..+|.
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~---~~-~~~~l~~~~~~~~~~~~~~~~~~~C~~C~---------~~f~s~~~l~   67 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFD---IP-DQKYLVDPNRLLNYLRKKVKESFRCPYCN---------KTFRSREALQ   67 (100)
T ss_dssp             ----------------------------------------------------SSEEBSSSS----------EESSHHHHH
T ss_pred             Cccccccccccccccccccccccccc---cc-cccccccccccccccccccCCCCCCCccC---------CCCcCHHHHH
Confidence            3667777765 333355654322211   00 12222234444444444  4579999999         9999999999


Q ss_pred             HHHHHhcc
Q 038715          221 QKAAEMGT  228 (332)
Q Consensus       221 ~H~~~~~~  228 (332)
                      .|++..+-
T Consensus        68 ~Hm~~~~H   75 (100)
T PF12756_consen   68 EHMRSKHH   75 (100)
T ss_dssp             HHHHHTTT
T ss_pred             HHHcCccC
Confidence            99997643

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.42  E-value=0.0014  Score=49.24  Aligned_cols=72  Identities=19%  Similarity=0.414  Sum_probs=19.1

Q ss_pred             ecccccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcccccc
Q 038715            7 ICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDK   86 (332)
Q Consensus         7 ~C~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~   86 (332)
                      +|..|+..|.....|..|+...+             +..   .+.        ...+.....+..+.+... ...+.|..
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H-------------~~~---~~~--------~~~l~~~~~~~~~~~~~~-~~~~~C~~   55 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKH-------------GFD---IPD--------QKYLVDPNRLLNYLRKKV-KESFRCPY   55 (100)
T ss_dssp             -------------------------------------------------------------------------SSEEBSS
T ss_pred             Ccccccccccccccccccccccc-------------ccc---ccc--------cccccccccccccccccc-CCCCCCCc
Confidence            59999999999999999986553             111   000        112222333333333222 22588888


Q ss_pred             ChhhhcCchhhHHHHHH
Q 038715           87 CSKCYAVQSDWKAHTKI  103 (332)
Q Consensus        87 C~~~f~~~~~L~~H~~~  103 (332)
                      |++.|.+...|..|++.
T Consensus        56 C~~~f~s~~~l~~Hm~~   72 (100)
T PF12756_consen   56 CNKTFRSREALQEHMRS   72 (100)
T ss_dssp             SS-EESSHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHcC
Confidence            88888888888888887

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.33  E-value=0.0033  Score=33.79  Aligned_cols=23  Identities=30%  Similarity=0.587  Sum_probs=15.9

Q ss_pred             ccCCCCCCCcccccccccccChhHHHHHHHHh
Q 038715          195 YLSSVCGSNACAMAIGSSFTSSTALLQKAAEM  226 (332)
Q Consensus       195 ~~C~~C~~~~~~~~~~~~f~~~~~L~~H~~~~  226 (332)
                      |+|++|+         +.|.+...|.+|+..+
T Consensus         1 ~~C~~C~---------~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICG---------KSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS----------EESSHHHHHHHHHHH
T ss_pred             CCCcCCC---------CcCCcHHHHHHHHHhh
Confidence            5677888         7788888888887655

...

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.17  E-value=0.0033  Score=40.43  Aligned_cols=33  Identities=15%  Similarity=0.298  Sum_probs=22.1

Q ss_pred             ccCCCccccccChhhhcCchhhHHHHHH-hCCCC
Q 038715           76 KHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTRE  108 (332)
Q Consensus        76 h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~  108 (332)
                      +..+.|..|++|+..+....+|++|+.+ |+.||
T Consensus        19 ~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   19 SQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             CTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             hccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            3456788999999999999999999988 87665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=96.17  E-value=0.0033  Score=34.36  Aligned_cols=24  Identities=33%  Similarity=0.660  Sum_probs=22.0

Q ss_pred             eecccccccccChhHHHHHHHhcC
Q 038715            6 YICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         6 ~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      |+|..|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            689999999999999999998774

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=95.71  E-value=0.0077  Score=57.30  Aligned_cols=148  Identities=14%  Similarity=0.120  Sum_probs=88.3

Q ss_pred             cceecCCCCCCCCCCCCccCChhhHhhhhc--cccCC--Cccccc--cChhhhcCchhhHHHHHH-hCCCCeee--e-cC
Q 038715           45 GVYVCPKPNCVHHHPSRALGDLTGVKKHFC--RKHGE--KKWKCD--KCSKCYAVQSDWKAHTKI-CGTREHRC--D-CG  114 (332)
Q Consensus        45 ~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~--~h~~e--k~~~C~--~C~~~f~~~~~L~~H~~~-h~~k~~~C--~-C~  114 (332)
                      .++.|..|       ...|.....|..|.+  .|.++  +++.|+  .|++.|.....+..|... .+.+++.+  . |.
T Consensus       288 ~~~~~~~~-------~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (467)
T COG5048         288 LPIKSKQC-------NISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSS  360 (467)
T ss_pred             cCCCCccc-------cCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCc
Confidence            46777777       788888888888888  78888  888888  688888888888888887 45555665  2 55


Q ss_pred             CccccchhHhhcCCccchhhhhccCCCCccCCC--CcccccCC-CCcccccccCCCC--ceecccccccccCcccccccc
Q 038715          115 IIFSSQNLAASGGMAQSQAQELFSSSMPSTDSD--SNTNIRMN-PSISRDNIENSLR--PLSMSSVGVMVSSNLDPILTS  189 (332)
Q Consensus       115 k~f~~~~~l~~h~~~~~~~~~~~~~~~~~~c~~--c~~~f~~~-~~~~h~~~h~~~k--~~~C~~C~k~F~~~~~L~~H~  189 (332)
                      +.+.....-..+..  ............+.+..  |...+... ....|...|...+  .+.+..|.+.|.....|..|+
T Consensus       361 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (467)
T COG5048         361 SKFSPLLNNEPPQS--LQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHK  438 (467)
T ss_pred             cccccccCCCCccc--hhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCcccccccc
Confidence            55554322110000  00111111222233322  33333322 2233445555544  566788999999999999998


Q ss_pred             cC---CCCccCCCCC
Q 038715          190 RV---SKPYLSSVCG  201 (332)
Q Consensus       190 ~~---~~p~~C~~C~  201 (332)
                      +.   ..++.|..+.
T Consensus       439 ~~~~~~~~~~~~~~~  453 (467)
T COG5048         439 KIHTNHAPLLCSILK  453 (467)
T ss_pred             cccccCCceeecccc
Confidence            88   4455554444

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=95.62  E-value=0.0072  Score=33.80  Aligned_cols=24  Identities=13%  Similarity=0.418  Sum_probs=14.0

Q ss_pred             eecCCCCCCCCCCCCccCChhhHhhhhcccc
Q 038715           47 YVCPKPNCVHHHPSRALGDLTGVKKHFCRKH   77 (332)
Q Consensus        47 ~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~   77 (332)
                      |.|..|       ++.|.....|..|++.|.
T Consensus         2 ~~C~~C-------~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    2 FECDEC-------GKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             EEETTT-------TEEESSHHHHHHHHCTTT
T ss_pred             CCCCcc-------CCccCChhHHHHHhHHhc
Confidence            556665       666666666666655543

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=95.57  E-value=0.0079  Score=32.94  Aligned_cols=23  Identities=26%  Similarity=0.879  Sum_probs=21.2

Q ss_pred             eecccccccccChhHHHHHHHhc
Q 038715            6 YICEVCHKGFQRDQNLQLHRKGH   28 (332)
Q Consensus         6 ~~C~~C~k~f~~~~~L~~H~~~h   28 (332)
                      |.|+.|++.|.+...|+.|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            78999999999999999998764

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.24  E-value=0.018  Score=37.11  Aligned_cols=27  Identities=19%  Similarity=0.406  Sum_probs=19.9

Q ss_pred             CCceecccccccccChhHHHHHHHhcC
Q 038715            3 TNRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         3 ~k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      +.|..|++|+..+.+..+|++|+..++
T Consensus        22 ~~PatCP~C~a~~~~srnLrRHle~~H   48 (54)
T PF09237_consen   22 EQPATCPICGAVIRQSRNLRRHLEIRH   48 (54)
T ss_dssp             S--EE-TTT--EESSHHHHHHHHHHHT
T ss_pred             CCCCCCCcchhhccchhhHHHHHHHHh
Confidence            578999999999999999999997665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=94.76  E-value=0.0095  Score=33.42  Aligned_cols=22  Identities=9%  Similarity=-0.053  Sum_probs=18.6

Q ss_pred             eecccccccccCcccccccccC
Q 038715          170 LSMSSVGVMVSSNLDPILTSRV  191 (332)
Q Consensus       170 ~~C~~C~k~F~~~~~L~~H~~~  191 (332)
                      |-|..|++.|.+...|..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6788888888888888888875

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=94.59  E-value=0.0058  Score=33.49  Aligned_cols=19  Identities=11%  Similarity=-0.218  Sum_probs=8.8

Q ss_pred             ecccccccccCcccccccc
Q 038715          171 SMSSVGVMVSSNLDPILTS  189 (332)
Q Consensus       171 ~C~~C~k~F~~~~~L~~H~  189 (332)
                      .|.+|++.|.+...|..|+
T Consensus         2 ~C~~C~~~f~s~~~~~~H~   20 (25)
T PF12874_consen    2 YCDICNKSFSSENSLRQHL   20 (25)
T ss_dssp             EETTTTEEESSHHHHHHHH
T ss_pred             CCCCCCCCcCCHHHHHHHH
Confidence            3444444444444444443

>PRK04860 hypothetical protein; Provisional

Probab=94.55  E-value=0.016  Score=47.74  Aligned_cols=35  Identities=26%  Similarity=0.667  Sum_probs=20.0

Q ss_pred             ccccccChhhhcCchhhHHHHHH-hCCCCeeee-cCCcccc
Q 038715           81 KWKCDKCSKCYAVQSDWKAHTKI-CGTREHRCD-CGIIFSS  119 (332)
Q Consensus        81 ~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C~-C~k~f~~  119 (332)
                      +|.|. |+.   ....+.+|.++ .++++|.|. |+..|..
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~  155 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVF  155 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEE
Confidence            46665 654   45555666666 355666665 6665543

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=94.49  E-value=0.026  Score=59.61  Aligned_cols=33  Identities=9%  Similarity=-0.049  Sum_probs=25.6

Q ss_pred             ceecccccccccCcccccccccC----CCCccCCCCC
Q 038715          169 PLSMSSVGVMVSSNLDPILTSRV----SKPYLSSVCG  201 (332)
Q Consensus       169 ~~~C~~C~k~F~~~~~L~~H~~~----~~p~~C~~C~  201 (332)
                      ++.|.+|+..-.-..+|+.||..    ..|--|-.|.
T Consensus       589 ~~~C~vc~yetniarnlrihmtss~~s~~p~~~Lq~~  625 (1406)
T KOG1146|consen  589 SWRCEVCSYETNIARNLRIHMTASPSSSPPSLVLQQN  625 (1406)
T ss_pred             CcchhhhcchhhhhhccccccccCCCCCChHHHhhhc
Confidence            58899999999999999999988    2224455555

>PRK04860 hypothetical protein; Provisional

Probab=93.93  E-value=0.017  Score=47.62  Aligned_cols=29  Identities=24%  Similarity=0.347  Sum_probs=14.5

Q ss_pred             ceecccccccccCcccccccccC---CCCccCCCCC
Q 038715          169 PLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVCG  201 (332)
Q Consensus       169 ~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C~  201 (332)
                      +|.|. |++   ....+++|.++   +++|.|..|+
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~  150 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCG  150 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCC
Confidence            45554 554   44444555444   4455555555

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=93.88  E-value=0.021  Score=31.95  Aligned_cols=23  Identities=30%  Similarity=0.785  Sum_probs=20.3

Q ss_pred             ceecccccccccChhHHHHHHHh
Q 038715            5 RYICEVCHKGFQRDQNLQLHRKG   27 (332)
Q Consensus         5 ~~~C~~C~k~f~~~~~L~~H~~~   27 (332)
                      .|-|..|++.|.+...|..|++.
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCCcccCCCCcCCHHHHHHHHcc
Confidence            37899999999999999999865

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=93.71  E-value=0.054  Score=29.26  Aligned_cols=22  Identities=36%  Similarity=0.638  Sum_probs=18.1

Q ss_pred             eecccccccccChhHHHHHHHhc
Q 038715            6 YICEVCHKGFQRDQNLQLHRKGH   28 (332)
Q Consensus         6 ~~C~~C~k~f~~~~~L~~H~~~h   28 (332)
                      |+|+.|+.... +..|.+|++.|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~   22 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRH   22 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhh
Confidence            79999999988 99999999875

>smart00355 ZnF_C2H2 zinc finger

Probab=93.54  E-value=0.086  Score=28.40  Aligned_cols=22  Identities=32%  Similarity=0.569  Sum_probs=16.9

Q ss_pred             ccCCCCCCCcccccccccccChhHHHHHHHH
Q 038715          195 YLSSVCGSNACAMAIGSSFTSSTALLQKAAE  225 (332)
Q Consensus       195 ~~C~~C~~~~~~~~~~~~f~~~~~L~~H~~~  225 (332)
                      |+|+.|+         +.|.....|..|...
T Consensus         1 ~~C~~C~---------~~f~~~~~l~~H~~~   22 (26)
T smart00355        1 YRCPECG---------KVFKSKSALKEHMRT   22 (26)
T ss_pred             CCCCCCc---------chhCCHHHHHHHHHH
Confidence            5788888         888888888888763

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=92.69  E-value=0.063  Score=28.99  Aligned_cols=21  Identities=38%  Similarity=0.681  Sum_probs=10.4

Q ss_pred             cccccChhhhcCchhhHHHHHH
Q 038715           82 WKCDKCSKCYAVQSDWKAHTKI  103 (332)
Q Consensus        82 ~~C~~C~~~f~~~~~L~~H~~~  103 (332)
                      |+|+.|+.... +..|..|++.
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~   21 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKR   21 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHh
Confidence            45555555554 5555555555

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=92.14  E-value=0.087  Score=47.82  Aligned_cols=30  Identities=33%  Similarity=0.690  Sum_probs=21.4

Q ss_pred             ccccc--ChhhhcCchhhHHHHHH-hCCCCeeee-c
Q 038715           82 WKCDK--CSKCYAVQSDWKAHTKI-CGTREHRCD-C  113 (332)
Q Consensus        82 ~~C~~--C~~~f~~~~~L~~H~~~-h~~k~~~C~-C  113 (332)
                      |.|+.  |.......-.|+.|.+. |+  .+.|. |
T Consensus       152 F~CP~skc~~~C~~~k~lk~H~K~~H~--~~~C~~C  185 (493)
T COG5236         152 FKCPKSKCHRRCGSLKELKKHYKAQHG--FVLCSEC  185 (493)
T ss_pred             hcCCchhhhhhhhhHHHHHHHHHhhcC--cEEhHhh
Confidence            67753  66666667788999998 73  36676 6

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=90.66  E-value=0.21  Score=27.43  Aligned_cols=21  Identities=29%  Similarity=0.613  Sum_probs=17.9

Q ss_pred             eecccccccccChhHHHHHHHh
Q 038715            6 YICEVCHKGFQRDQNLQLHRKG   27 (332)
Q Consensus         6 ~~C~~C~k~f~~~~~L~~H~~~   27 (332)
                      .+|+.||+.| ....|..|+..
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            5799999999 67889999764

>smart00451 ZnF_U1 U1-like zinc finger

Probab=90.31  E-value=0.22  Score=29.46  Aligned_cols=25  Identities=24%  Similarity=0.708  Sum_probs=21.6

Q ss_pred             CceecccccccccChhHHHHHHHhc
Q 038715            4 NRYICEVCHKGFQRDQNLQLHRKGH   28 (332)
Q Consensus         4 k~~~C~~C~k~f~~~~~L~~H~~~h   28 (332)
                      .+|.|+.|++.|.....+..|++..
T Consensus         2 ~~~~C~~C~~~~~~~~~~~~H~~gk   26 (35)
T smart00451        2 GGFYCKLCNVTFTDEISVEAHLKGK   26 (35)
T ss_pred             cCeEccccCCccCCHHHHHHHHChH
Confidence            3689999999999999999997643

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=90.08  E-value=0.14  Score=48.62  Aligned_cols=133  Identities=15%  Similarity=0.191  Sum_probs=93.1

Q ss_pred             CccccccChhhhcCchhhHHHHH--H-hCC--CCeeee---cCCccccchhHhhcCCccchhhhhccCCCCccCCC--Cc
Q 038715           80 KKWKCDKCSKCYAVQSDWKAHTK--I-CGT--REHRCD---CGIIFSSQNLAASGGMAQSQAQELFSSSMPSTDSD--SN  149 (332)
Q Consensus        80 k~~~C~~C~~~f~~~~~L~~H~~--~-h~~--k~~~C~---C~k~f~~~~~l~~h~~~~~~~~~~~~~~~~~~c~~--c~  149 (332)
                      .++.|..|...|.....|..|.+  . .++  +++.|.   |++.|.....+.       .+..+|....++.+..  +.
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~  360 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALK-------RHILLHTSISPAKEKLLNSS  360 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCcccccccccc-------CCcccccCCCccccccccCc
Confidence            47899999999999999999999  6 477  899996   999999999888       4566666666665544  33


Q ss_pred             ccccCCCC------cccccccCCCCceec--ccccccccCcccccccccC-----CCCccCCCCCCCcccccccccccCh
Q 038715          150 TNIRMNPS------ISRDNIENSLRPLSM--SSVGVMVSSNLDPILTSRV-----SKPYLSSVCGSNACAMAIGSSFTSS  216 (332)
Q Consensus       150 ~~f~~~~~------~~h~~~h~~~k~~~C--~~C~k~F~~~~~L~~H~~~-----~~p~~C~~C~~~~~~~~~~~~f~~~  216 (332)
                      ..+.....      ......-...+.+.|  ..|-..+.+...+..|...     ...+.+..|.         +.+...
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~  431 (467)
T COG5048         361 SKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCS---------KSFNRH  431 (467)
T ss_pred             cccccccCCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcch---------hhccCc
Confidence            33321111      111112223445555  3478888888888888665     4467788899         888888


Q ss_pred             hHHHHHHHHhcc
Q 038715          217 TALLQKAAEMGT  228 (332)
Q Consensus       217 ~~L~~H~~~~~~  228 (332)
                      ..|..|...+..
T Consensus       432 ~~~~~~~~~~~~  443 (467)
T COG5048         432 YNLIPHKKIHTN  443 (467)
T ss_pred             cccccccccccc
Confidence            888777665543

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.70  E-value=0.29  Score=48.95  Aligned_cols=107  Identities=12%  Similarity=0.139  Sum_probs=57.6

Q ss_pred             cccChhhhcCchhhHHHHHH-hCCCCeeee-c----------CCccccchhHhhcCCccchhhhhccCCCCccCCCCccc
Q 038715           84 CDKCSKCYAVQSDWKAHTKI-CGTREHRCD-C----------GIIFSSQNLAASGGMAQSQAQELFSSSMPSTDSDSNTN  151 (332)
Q Consensus        84 C~~C~~~f~~~~~L~~H~~~-h~~k~~~C~-C----------~k~f~~~~~l~~h~~~~~~~~~~~~~~~~~~c~~c~~~  151 (332)
                      |..| -.|.....|+.|+.. |  +.+.|. |          .+.|....++.++..-.. -.+.+.+  .-.|..|...
T Consensus       118 ~~~c-~~~~s~~~Lk~H~~~~H--~~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~-d~~s~rG--hp~C~~C~~~  191 (669)
T KOG2231|consen  118 CLHC-TEFKSVENLKNHMRDQH--KLHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDP-DDESCRG--HPLCKFCHER  191 (669)
T ss_pred             Cccc-cchhHHHHHHHHHHHhh--hhhccccccccceeeeeeeehehHHHHHHHHhcCCC-ccccccC--Cccchhhhhh
Confidence            3344 344478899999987 7  334443 3          344444444432111111 1111111  3467778877


Q ss_pred             ccCCC-CcccccccCCCCceecccc------cccccCcccccccccCCCCccCC--CCC
Q 038715          152 IRMNP-SISRDNIENSLRPLSMSSV------GVMVSSNLDPILTSRVSKPYLSS--VCG  201 (332)
Q Consensus       152 f~~~~-~~~h~~~h~~~k~~~C~~C------~k~F~~~~~L~~H~~~~~p~~C~--~C~  201 (332)
                      |-... +..|++.+    -|.|..|      +..|.....|..|-|. .=|.|.  .|-
T Consensus       192 fld~~el~rH~~~~----h~~chfC~~~~~~neyy~~~~dLe~HfR~-~HflCE~~~C~  245 (669)
T KOG2231|consen  192 FLDDDELYRHLRFD----HEFCHFCDYKTGQNEYYNDYDDLEEHFRK-GHFLCEEEFCR  245 (669)
T ss_pred             hccHHHHHHhhccc----eeheeecCcccccchhcccchHHHHHhhh-cCccccccccc
Confidence            76333 34455544    4667666      4557777788888776 445565  455

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=88.22  E-value=0.39  Score=28.24  Aligned_cols=23  Identities=22%  Similarity=0.559  Sum_probs=15.8

Q ss_pred             eecccccccccCcccccccccCCCCccCCCCC
Q 038715          170 LSMSSVGVMVSSNLDPILTSRVSKPYLSSVCG  201 (332)
Q Consensus       170 ~~C~~C~k~F~~~~~L~~H~~~~~p~~C~~C~  201 (332)
                      |.|.+||..+....         .|..|++|+
T Consensus         2 ~~C~~CGy~y~~~~---------~~~~CP~Cg   24 (33)
T cd00350           2 YVCPVCGYIYDGEE---------APWVCPVCG   24 (33)
T ss_pred             EECCCCCCEECCCc---------CCCcCcCCC
Confidence            67777876655432         677788887

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.13  E-value=0.61  Score=46.77  Aligned_cols=83  Identities=16%  Similarity=0.295  Sum_probs=45.8

Q ss_pred             eecccccccc---------------cChhHHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCC--CCCCccCChhh
Q 038715            6 YICEVCHKGF---------------QRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHH--HPSRALGDLTG   68 (332)
Q Consensus         6 ~~C~~C~k~f---------------~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~--~~~~~f~~~~~   68 (332)
                      +.|.+|++.|               .....|+.|+..-+               +.+.|.+|-+-..  ......-....
T Consensus       100 ~~C~~C~~~~~~~~~~~~~~~c~~~~s~~~Lk~H~~~~H---------------~~~~c~lC~~~~kif~~e~k~Yt~~e  164 (669)
T KOG2231|consen  100 HSCHICDRRFRALYNKKECLHCTEFKSVENLKNHMRDQH---------------KLHLCSLCLQNLKIFINERKLYTRAE  164 (669)
T ss_pred             hhcCccccchhhhcccCCCccccchhHHHHHHHHHHHhh---------------hhhccccccccceeeeeeeehehHHH
Confidence            4566776666               36788999984332               2334444422000  00122234455


Q ss_pred             HhhhhccccC-CC----ccccccChhhhcCchhhHHHHHH
Q 038715           69 VKKHFCRKHG-EK----KWKCDKCSKCYAVQSDWKAHTKI  103 (332)
Q Consensus        69 L~~H~~~h~~-ek----~~~C~~C~~~f~~~~~L~~H~~~  103 (332)
                      |..|+..-.. ++    --.|..|...|.....|.+|++.
T Consensus       165 l~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH~~~  204 (669)
T KOG2231|consen  165 LNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYRHLRF  204 (669)
T ss_pred             HHHHHhcCCCccccccCCccchhhhhhhccHHHHHHhhcc
Confidence            6666543211 21    14677888888888888888887

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=86.27  E-value=0.13  Score=44.37  Aligned_cols=29  Identities=10%  Similarity=0.087  Sum_probs=22.7

Q ss_pred             cccccccccCcccccccccCCCCccCCCCC
Q 038715          172 MSSVGVMVSSNLDPILTSRVSKPYLSSVCG  201 (332)
Q Consensus       172 C~~C~k~F~~~~~L~~H~~~~~p~~C~~C~  201 (332)
                      |..|++.|.....|..|++. +-|+|.+|.
T Consensus        13 cwycnrefddekiliqhqka-khfkchich   41 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQKA-KHFKCHICH   41 (341)
T ss_pred             eeecccccchhhhhhhhhhh-ccceeeeeh
Confidence            77788888887788877776 677788887

>smart00451 ZnF_U1 U1-like zinc finger

Probab=85.10  E-value=0.75  Score=27.05  Aligned_cols=23  Identities=13%  Similarity=0.368  Sum_probs=18.1

Q ss_pred             CCccCCCCCCCcccccccccccChhHHHHHHH
Q 038715          193 KPYLSSVCGSNACAMAIGSSFTSSTALLQKAA  224 (332)
Q Consensus       193 ~p~~C~~C~~~~~~~~~~~~f~~~~~L~~H~~  224 (332)
                      .+|.|++|+         +.|.+..++..|..
T Consensus         2 ~~~~C~~C~---------~~~~~~~~~~~H~~   24 (35)
T smart00451        2 GGFYCKLCN---------VTFTDEISVEAHLK   24 (35)
T ss_pred             cCeEccccC---------CccCCHHHHHHHHC
Confidence            367888888         88888888888754

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.92  E-value=0.23  Score=41.93  Aligned_cols=74  Identities=19%  Similarity=0.460  Sum_probs=57.9

Q ss_pred             CcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccChhhhcCchhhHHHHHH-h----------CCCCeee-
Q 038715           44 KGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-C----------GTREHRC-  111 (332)
Q Consensus        44 ~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h----------~~k~~~C-  111 (332)
                      ...+.|+.-||     .+.|........|..+-++   -.|..|.+.|.+...|..|+.- |          |..-|.| 
T Consensus        77 ~~~~~cqvagc-----~~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~Cl  148 (253)
T KOG4173|consen   77 VPAFACQVAGC-----CQVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCL  148 (253)
T ss_pred             cccccccccch-----HHHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHH
Confidence            45688998877     7888887777777655444   3899999999999999999887 6          4445889 


Q ss_pred             -e-cCCccccchhHhh
Q 038715          112 -D-CGIIFSSQNLAAS  125 (332)
Q Consensus       112 -~-C~k~f~~~~~l~~  125 (332)
                       + |+..|.+......
T Consensus       149 vEgCt~KFkT~r~Rkd  164 (253)
T KOG4173|consen  149 VEGCTEKFKTSRDRKD  164 (253)
T ss_pred             HHhhhhhhhhhhhhhh
Confidence             6 9999998666554

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=84.86  E-value=0.5  Score=31.06  Aligned_cols=27  Identities=19%  Similarity=0.316  Sum_probs=23.6

Q ss_pred             CCCceecccccccccChhHHHHHHHhc
Q 038715            2 ATNRYICEVCHKGFQRDQNLQLHRKGH   28 (332)
Q Consensus         2 ~~k~~~C~~C~k~f~~~~~L~~H~~~h   28 (332)
                      ||.-++|+.||..|....++.+|....
T Consensus        14 GE~~lrCPRC~~~FR~~K~Y~RHVNKa   40 (65)
T COG4049          14 GEEFLRCPRCGMVFRRRKDYIRHVNKA   40 (65)
T ss_pred             CceeeeCCchhHHHHHhHHHHHHhhHH
Confidence            567799999999999999999997643

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=84.19  E-value=0.54  Score=50.16  Aligned_cols=54  Identities=17%  Similarity=0.174  Sum_probs=46.9

Q ss_pred             ccCCCCceecccccccccCcccccccccC----------------------------CCCccCCCCCCCccccccccccc
Q 038715          163 IENSLRPLSMSSVGVMVSSNLDPILTSRV----------------------------SKPYLSSVCGSNACAMAIGSSFT  214 (332)
Q Consensus       163 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~----------------------------~~p~~C~~C~~~~~~~~~~~~f~  214 (332)
                      +++-.|.|.|+.|+..|+....|..|||+                            .+||.|..|.         .+++
T Consensus       459 L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~---------~stt  529 (1406)
T KOG1146|consen  459 LHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACN---------YSTT  529 (1406)
T ss_pred             eecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeee---------eeee
Confidence            45556889999999999999999999986                            4689999999         9999


Q ss_pred             ChhHHHHHHHH
Q 038715          215 SSTALLQKAAE  225 (332)
Q Consensus       215 ~~~~L~~H~~~  225 (332)
                      .+.+|..|+..
T Consensus       530 tng~LsihlqS  540 (1406)
T KOG1146|consen  530 TNGNLSIHLQS  540 (1406)
T ss_pred             cchHHHHHHHH
Confidence            99999998653

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=81.02  E-value=0.79  Score=39.80  Aligned_cols=37  Identities=16%  Similarity=0.257  Sum_probs=23.8

Q ss_pred             CCceecccccccccCcccccccccC-------------CCC-----ccCCCCCCC
Q 038715          167 LRPLSMSSVGVMVSSNLDPILTSRV-------------SKP-----YLSSVCGSN  203 (332)
Q Consensus       167 ~k~~~C~~C~k~F~~~~~L~~H~~~-------------~~p-----~~C~~C~~~  203 (332)
                      ++.+.|++|++.|.++.-+....++             ..|     ..||.||.+
T Consensus         3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA   57 (214)
T PF09986_consen    3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYA   57 (214)
T ss_pred             CCceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCc
Confidence            3567788888888777555545443             222     479999933

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=80.81  E-value=1.3  Score=26.18  Aligned_cols=24  Identities=17%  Similarity=0.332  Sum_probs=16.4

Q ss_pred             ceecccccccccCcccccccccCCCCccCCCCC
Q 038715          169 PLSMSSVGVMVSSNLDPILTSRVSKPYLSSVCG  201 (332)
Q Consensus       169 ~~~C~~C~k~F~~~~~L~~H~~~~~p~~C~~C~  201 (332)
                      .|.|.+||..+....         .|..|++|+
T Consensus         2 ~~~C~~CG~i~~g~~---------~p~~CP~Cg   25 (34)
T cd00729           2 VWVCPVCGYIHEGEE---------APEKCPICG   25 (34)
T ss_pred             eEECCCCCCEeECCc---------CCCcCcCCC
Confidence            477888887655432         466788888

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>TIGR00622 ssl1 transcription factor ssl1

Probab=80.05  E-value=3.1  Score=31.93  Aligned_cols=21  Identities=14%  Similarity=0.302  Sum_probs=15.3

Q ss_pred             CCccccccChhhhcCchhhHH
Q 038715           79 EKKWKCDKCSKCYAVQSDWKA   99 (332)
Q Consensus        79 ek~~~C~~C~~~f~~~~~L~~   99 (332)
                      +-|..|+.|+........|.+
T Consensus        13 ~LP~~CpiCgLtLVss~HLAR   33 (112)
T TIGR00622        13 ELPVECPICGLTLILSTHLAR   33 (112)
T ss_pred             CCCCcCCcCCCEEeccchHHH
Confidence            356788888888777776664

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	332
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	6e-05
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	1e-04
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-04
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	5e-04

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 40.3 bits (95), Expect = 6e-05
 Identities = 23/100 (23%), Positives = 36/100 (36%), Gaps = 22/100 (22%)

Query: 6   YICEV--CHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRAL 63
           Y+C    C K F++   L++H+  H           TQ     Y CP   C      +  
Sbjct: 2   YVCHFENCGKAFKKHNQLKVHQFSH-----------TQQLP--YECPHEGC-----DKRF 43

Query: 64  GDLTGVKKHFCRKH-GEKKWKCDKCSKCYAVQSDWKAHTK 102
              + +K+H  + H G    K D CS      + +  H  
Sbjct: 44  SLPSRLKRHE-KVHAGYPCKKDDSCSFVGKTWTLYLKHVA 82

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 22/101 (21%)

Query: 6   YICEV--CHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRAL 63
           + C+   C K + +  +L+ H + H       ++P        Y C    C         
Sbjct: 16  HYCDYPGCTKVYTKSSHLKAHLRTHT-----GEKP--------YKCTWEGC-----DWRF 57

Query: 64  GDLTGVKKHFCRKH-GEKKWKCDKCSKCYAVQSDWKAHTKI 103
                + +H+ RKH G K ++C  C++ ++       H K 
Sbjct: 58  ARSDELTRHY-RKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 23/103 (22%)

Query: 6   YIC--EVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRAL 63
           + C  E C K + R +NL+ H + H       ++P        Y+C    C     S+A 
Sbjct: 68  HKCTFEGCRKSYSRLENLKTHLRSHTG-----EKP--------YMCEHEGC-----SKAF 109

Query: 64  GDLTGVKKHFCRKH-GEKKWKCDK--CSKCYAVQSDWKAHTKI 103
            + +   KH  R H  EK + C    C+K Y   S  + H K 
Sbjct: 110 SNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 38.3 bits (90), Expect = 5e-04
 Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 26/120 (21%)

Query: 6   YICE--VCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRAL 63
           ++C    C+K + +  +LQ+H + H       ++P        Y C   +C      R  
Sbjct: 7   FMCAYPGCNKRYFKLSHLQMHSRKHT-----GEKP--------YQCDFKDC-----ERRF 48

Query: 64  GDLTGVKKHFCRKH-GEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRC---DCGIIFS 118
                +K+H  R+H G K ++C  C + ++     K HT+   G +   C    C   F+
Sbjct: 49  SRSDQLKRHQ-RRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFA 107

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	332
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.97
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.95
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.94
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.91
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.88
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.87
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.85
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.84
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.83
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.83
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.83
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.82
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.82
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.81
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.8
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.78
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.72
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.7
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.69
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.69
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.68
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.67
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.66
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.65
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.65
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.64
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.6
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.6
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.6
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.59
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.59
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.58
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.58
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.58
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.55
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.54
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.52
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.51
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.48
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.47
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.46
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.46
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.43
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.43
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.42
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.42
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.41
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.41
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.36
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.34
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.34
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.34
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.33
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.3
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.3
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.29
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.29
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.29
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.28
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.28
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.28
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.26
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.26
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.25
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.24
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.22
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.22
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.22
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.22
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.21
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.18
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.18
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.18
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.17
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.15
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.14
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.13
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.11
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.07
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.07
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.06
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.05
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.05
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.04
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.04
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.04
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.04
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.04
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.04
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.04
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.03
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.03
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.03
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.03
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.03
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.03
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.03
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.02
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.02
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.02
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.02
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.02
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.02
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.02
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.01
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.01
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.01
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.01
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.01
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.01
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.01
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.01
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.0
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.0
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.0
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.99
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.99
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.99
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.98
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.98
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.97
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	98.96
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.92
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.91
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.9
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.89
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.89
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.88
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.88
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.88
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.87
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.87
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.87
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.87
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.87
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.87
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.86
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.86
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.86
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.85
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.85
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.85
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.85
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.85
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.85
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.85
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.85
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.85
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.85
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.85
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.85
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.85
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.85
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.85
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.85
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.84
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.84
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.84
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.84
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.84
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.84
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.84
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.84
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.84
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.84
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.83
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.83
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.83
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.83
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.83
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.83
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.83
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.83
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.83
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.83
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.83
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.83
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.83
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.83
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.82
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.82
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.82
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.82
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.82
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.82
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.82
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.82
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.82
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.82
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.81
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.81
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.81
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.81
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.81
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.81
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.81
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.81
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.81
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.8
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.8
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.8
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.79
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.79
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.79
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.79
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.78
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.78
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.77
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.77
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.77
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.76
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.76
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.76
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.76
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.76
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.75
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.75
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.75
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.74
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.74
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.74
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.74
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.73
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.73
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.72
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.72
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.71
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.71
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.71
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.68
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.68
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.67
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.67
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.67
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.67
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.67
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.66
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.66
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.66
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.66
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.66
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.66
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.65
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.65
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.65
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.65
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.65
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.65
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.65
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.65
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.65
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.64
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.63
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.63
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.63
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.63
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.63
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.62
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.62
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.62
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.61
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.61
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.61
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.6
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.6
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.6
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.6
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.59
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.59
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.59
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.58
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.57
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.57
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.57
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.56
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.55
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.55
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.53
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.53
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.53
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.52
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.51
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.5
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.49
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.48
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.44
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.43
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.43
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.38
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.32
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.26
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.26
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.23
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.23
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.21
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.21
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.21
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.1
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.1
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.09
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.07
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.06
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.06
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.04
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.03
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.02
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.02
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.01
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.01
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.0
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.99
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.99
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.98
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.97
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.96
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.95
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.95
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.94
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.93
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.87
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.84
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.04
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.83
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.83
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.82
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.82
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.81
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.79
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.78
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.78
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.78
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.77
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.77
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.75
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.74
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.74
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.92
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.73
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.91
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.71
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.88
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.69
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.69
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.68
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.68
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.58
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.57
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.53
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.51
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.5
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.48
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.46
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.46
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.43
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.39
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.37
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.37
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.32
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.43
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.31
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.3
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.39
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.27
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.24
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	96.74
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.7
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.42
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.29
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.17
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.16
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	94.28
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	93.72
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	91.8
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	90.72
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	87.47
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	86.61
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	85.77
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	84.74

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.97  E-value=6.6e-33  Score=235.84  Aligned_cols=152  Identities=20%  Similarity=0.372  Sum_probs=92.0

Q ss_pred             CCccCChhhHhhhhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCeeee-cCCccccchhHhhcCCccchhhhhc
Q 038715           60 SRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRCD-CGIIFSSQNLAASGGMAQSQAQELF  137 (332)
Q Consensus        60 ~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C~-C~k~f~~~~~l~~h~~~~~~~~~~~  137 (332)
                      ++.|.....|..|++.|.++++|.|+.|++.|.+...|..|++. +++++|.|+ |++.|.+...|.       .|+++|
T Consensus        28 ~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~-------~H~~~h  100 (190)
T 2i13_A           28 GKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLR-------AHQRTH  100 (190)
T ss_dssp             ---CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHH-------HHHHHH
T ss_pred             ccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHH-------HHHHhc
Confidence            44444444444444444444444444444444444444444444 344444444 444444444444       234444


Q ss_pred             cCCCCccCCCCcccccCCC-CcccccccCCCCceecccccccccCcccccccccC---CCCccCCCCCCCcccccccccc
Q 038715          138 SSSMPSTDSDSNTNIRMNP-SISRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVCGSNACAMAIGSSF  213 (332)
Q Consensus       138 ~~~~~~~c~~c~~~f~~~~-~~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C~~~~~~~~~~~~f  213 (332)
                      .++++|.|+.|++.|.... +..|+++|++++||.|++|++.|.+...|..|+++   ++||+|++|+         +.|
T Consensus       101 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~---------~~f  171 (190)
T 2i13_A          101 TGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECG---------KSF  171 (190)
T ss_dssp             HTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTC---------CEE
T ss_pred             CCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCC---------Ccc
Confidence            4444444444444444222 23588888889999999999999999999999888   8899999999         999


Q ss_pred             cChhHHHHHHHHhc
Q 038715          214 TSSTALLQKAAEMG  227 (332)
Q Consensus       214 ~~~~~L~~H~~~~~  227 (332)
                      .+...|..|++.+.
T Consensus       172 ~~~~~L~~H~~~H~  185 (190)
T 2i13_A          172 SRRDALNVHQRTHT  185 (190)
T ss_dssp             SSHHHHHHHHTTC-
T ss_pred             CCHHHHHHHHHhcC
Confidence            99999999987653

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.95  E-value=9.6e-29  Score=210.06  Aligned_cols=163  Identities=21%  Similarity=0.339  Sum_probs=149.2

Q ss_pred             CCCceec--ccccccccChhHHHHHHHhcCCCcccccCccccCCCcceec--CCCCCCCCCCCCccCChhhHhhhhcccc
Q 038715            2 ATNRYIC--EVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVC--PKPNCVHHHPSRALGDLTGVKKHFCRKH   77 (332)
Q Consensus         2 ~~k~~~C--~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C--~~C~C~~~~~~~~f~~~~~L~~H~~~h~   77 (332)
                      ++++|.|  +.|++.|.+...|..|++.|.             ++++|.|  +.|       ++.|.....|..|+++|.
T Consensus         9 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~   68 (190)
T 1tf6_A            9 VYKRYICSFADCGAAYNKNWKLQAHLCKHT-------------GEKPFPCKEEGC-------EKGFTSLHHLTRHSLTHT   68 (190)
T ss_dssp             -CCCCBCSSTTTCCBCSSHHHHHHHHHHHH-------------CCCSSCCSSTTC-------CCCCSSHHHHHHHHTTTT
T ss_pred             CCcceeCCCCCCcchhCCHHHHHHHHHhcC-------------CCCCccCCCCCC-------ChhhCCHHHHHHHHHHcc
Confidence            4689999  789999999999999999997             8899999  789       999999999999999999


Q ss_pred             CCCccccc--cChhhhcCchhhHHHHHH-h--CCCCeee--e-cCCccccchhHhhcCCccchhhhhccCCCCccCCCCc
Q 038715           78 GEKKWKCD--KCSKCYAVQSDWKAHTKI-C--GTREHRC--D-CGIIFSSQNLAASGGMAQSQAQELFSSSMPSTDSDSN  149 (332)
Q Consensus        78 ~ek~~~C~--~C~~~f~~~~~L~~H~~~-h--~~k~~~C--~-C~k~f~~~~~l~~h~~~~~~~~~~~~~~~~~~c~~c~  149 (332)
                      ++++|.|+  .|++.|.+...|..|++. |  ++++|.|  + |++.|.+...|..                        
T Consensus        69 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~------------------------  124 (190)
T 1tf6_A           69 GEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKV------------------------  124 (190)
T ss_dssp             TCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHH------------------------
T ss_pred             CCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHH------------------------
Confidence            99999999  899999999999999966 7  5789999  8 9999999998884                        


Q ss_pred             ccccCCCCcccccccCCCCceeccc--ccccccCcccccccccCCCCccCCC---CCCCcccccccccccChhHHHHHHH
Q 038715          150 TNIRMNPSISRDNIENSLRPLSMSS--VGVMVSSNLDPILTSRVSKPYLSSV---CGSNACAMAIGSSFTSSTALLQKAA  224 (332)
Q Consensus       150 ~~f~~~~~~~h~~~h~~~k~~~C~~--C~k~F~~~~~L~~H~~~~~p~~C~~---C~~~~~~~~~~~~f~~~~~L~~H~~  224 (332)
                                |+++|++++||.|++  |++.|.+...|..|+++-..|+|+.   |+         +.|.+...|..|++
T Consensus       125 ----------H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~~~C~~~~~C~---------~~f~~~~~l~~H~~  185 (190)
T 1tf6_A          125 ----------HQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS---------FVGKTWTLYLKHVA  185 (190)
T ss_dssp             ----------HHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCSCCCCSTTTCC---------CCCSCHHHHHHHHT
T ss_pred             ----------HHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCCCcCCCCCcCC---------CccccHHHHHHHHH
Confidence                      888999999999988  9999999999999999933399999   99         99999999999987


Q ss_pred             Hhc
Q 038715          225 EMG  227 (332)
Q Consensus       225 ~~~  227 (332)
                      .++
T Consensus       186 ~h~  188 (190)
T 1tf6_A          186 ECH  188 (190)
T ss_dssp             TCC
T ss_pred             hhc
Confidence            654

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.94  E-value=3.2e-28  Score=206.79  Aligned_cols=167  Identities=22%  Similarity=0.439  Sum_probs=140.4

Q ss_pred             CCCceecccccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCc
Q 038715            2 ATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKK   81 (332)
Q Consensus         2 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~   81 (332)
                      ++++|.|+.|++.|.....|..|++.|.             ++++|.|+.|       ++.|.....|..|++.|.++++
T Consensus        18 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~   77 (190)
T 2i13_A           18 GEKPYACPECGKSFSRSDHLAEHQRTHT-------------GEKPYKCPEC-------GKSFSDKKDLTRHQRTHTGEKP   77 (190)
T ss_dssp             -------------CCSSHHHHHGGGCC----------------CCEECTTT-------CCEESSHHHHHHHHHHHHCCCC
T ss_pred             CCCCCcCCCCccccCCHHHHHHHHHHcC-------------CCCCccCCCc-------CchhCCHHHHHHHHHhcCCCCC
Confidence            5789999999999999999999999997             7899999999       9999999999999999999999


Q ss_pred             cccccChhhhcCchhhHHHHHH-hCCCCeeee-cCCccccchhHhhcCCccchhhhhccCCCCccCCCCcccccCC-CCc
Q 038715           82 WKCDKCSKCYAVQSDWKAHTKI-CGTREHRCD-CGIIFSSQNLAASGGMAQSQAQELFSSSMPSTDSDSNTNIRMN-PSI  158 (332)
Q Consensus        82 ~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C~-C~k~f~~~~~l~~h~~~~~~~~~~~~~~~~~~c~~c~~~f~~~-~~~  158 (332)
                      |.|+.|++.|.+...|..|++. +++++|.|+ |++.|.+...|.       .|+++|.++++|.|+.|++.|... .+.
T Consensus        78 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~-------~H~~~h~~~~~~~C~~C~~~f~~~~~L~  150 (190)
T 2i13_A           78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLR-------AHQRTHTGEKPYKCPECGKSFSREDNLH  150 (190)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHH-------HHHHHHHCCCCEECTTTCCEESCHHHHH
T ss_pred             ccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHH-------HHHHHhCCCCCeECCCCCcccCCHHHHH
Confidence            9999999999999999999999 799999999 999999999998       578899999999999999999854 447


Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCc
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPY  195 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~  195 (332)
                      .|+++|++++||.|++|++.|.+...|..|+++   ++||
T Consensus       151 ~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~k~~  190 (190)
T 2i13_A          151 THQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKTS  190 (190)
T ss_dssp             HHHHHHHCCCCEECTTTCCEESSHHHHHHHHTTC------
T ss_pred             HHHHhcCCCCCeECCCCCCccCCHHHHHHHHHhcCCCCCC
Confidence            799999999999999999999999999999998   6665

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.91  E-value=3.4e-25  Score=181.62  Aligned_cols=107  Identities=25%  Similarity=0.461  Sum_probs=78.8

Q ss_pred             CCceecccccccccChhHHHHHHH---hcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCC
Q 038715            3 TNRYICEVCHKGFQRDQNLQLHRK---GHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGE   79 (332)
Q Consensus         3 ~k~~~C~~C~k~f~~~~~L~~H~~---~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~e   79 (332)
                      |.+|+|+.|++.|.+...|..|++   .|.             ++++|.|++|+|  ..+++.|.....|..|++.|.++
T Consensus         1 E~~~~C~~C~~~f~~~~~L~~H~~~~h~h~-------------~~~~~~C~~c~C--~~c~~~f~~~~~l~~H~~~h~~~   65 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHG-------------ERKEFVCHWGGC--SRELRPFKAQYMLVVHMRRHTGE   65 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHHHHHHHHTSSS-------------CSSCCCCCBTTC--TTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcCCcCCCccccCCHHHHHHHHHhhccCC-------------CCcceeCCCCCc--cchhhhhhhHHHHHHHHHhcCCC
Confidence            467899999999999999999988   454             778899887644  11147788888888888888888


Q ss_pred             Ccccccc--ChhhhcCchhhHHHHHH-hCCCCeeee---cCCccccchhHh
Q 038715           80 KKWKCDK--CSKCYAVQSDWKAHTKI-CGTREHRCD---CGIIFSSQNLAA  124 (332)
Q Consensus        80 k~~~C~~--C~~~f~~~~~L~~H~~~-h~~k~~~C~---C~k~f~~~~~l~  124 (332)
                      ++|.|++  |++.|.+...|..|++. +++++|.|+   |++.|.+...|.
T Consensus        66 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~  116 (155)
T 2gli_A           66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRA  116 (155)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTH
T ss_pred             CCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHH
Confidence            8888874  88888777777777776 455556663   555555555554

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=4.4e-23  Score=168.98  Aligned_cols=134  Identities=16%  Similarity=0.257  Sum_probs=119.3

Q ss_pred             CcceecCCCCCCCCCCCCccCChhhHhhhhc---cccCCCccccccC-----hhhhcCchhhHHHHHH-hCCCCeeee--
Q 038715           44 KGVYVCPKPNCVHHHPSRALGDLTGVKKHFC---RKHGEKKWKCDKC-----SKCYAVQSDWKAHTKI-CGTREHRCD--  112 (332)
Q Consensus        44 ~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~---~h~~ek~~~C~~C-----~~~f~~~~~L~~H~~~-h~~k~~~C~--  112 (332)
                      +.+|.|+.|       ++.|.+...|..|++   +|.++++|.|++|     ++.|.+...|..|++. +++++|.|.  
T Consensus         1 E~~~~C~~C-------~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~   73 (155)
T 2gli_A            1 ETDCRWDGC-------SQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFE   73 (155)
T ss_dssp             CCBCCBTTC-------CCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCST
T ss_pred             CCcCCcCCC-------ccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCC
Confidence            357899999       999999999999998   7889999998753     4899999999999999 688999994  


Q ss_pred             -cCCccccchhHhhcCCccchhhhhccCCCCccCCCCcccccCCCCcccccccCCCCceeccc--ccccccCcccccccc
Q 038715          113 -CGIIFSSQNLAASGGMAQSQAQELFSSSMPSTDSDSNTNIRMNPSISRDNIENSLRPLSMSS--VGVMVSSNLDPILTS  189 (332)
Q Consensus       113 -C~k~f~~~~~l~~h~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~~~h~~~h~~~k~~~C~~--C~k~F~~~~~L~~H~  189 (332)
                       |++.|.+...|..                                  |+++|++++||.|++  |++.|.+...|..|+
T Consensus        74 ~C~~~f~~~~~l~~----------------------------------H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~  119 (155)
T 2gli_A           74 GCRKSYSRLENLKT----------------------------------HLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQ  119 (155)
T ss_dssp             TCCCCCSSHHHHHH----------------------------------HHHHTTTCCCEECCSTTCCCEESSSSTTHHHH
T ss_pred             CCCCcccCHHHHHH----------------------------------HHHHcCCCCCeeCCCCCCCCccCCHHHHHHHH
Confidence             9999999888884                                  888889999999998  999999999999998


Q ss_pred             -cC---CCCccCCC--CCCCcccccccccccChhHHHHHHHHhc
Q 038715          190 -RV---SKPYLSSV--CGSNACAMAIGSSFTSSTALLQKAAEMG  227 (332)
Q Consensus       190 -~~---~~p~~C~~--C~~~~~~~~~~~~f~~~~~L~~H~~~~~  227 (332)
                       ++   ++||+|++  |+         +.|.+...|..|++.++
T Consensus       120 ~~~H~~~~~~~C~~~~C~---------~~f~~~~~L~~H~~~hh  154 (155)
T 2gli_A          120 NRTHSNEKPYVCKLPGCT---------KRYTDPSSLRKHVKTVH  154 (155)
T ss_dssp             HHTTCSCCCEECCSTTTC---------CEESSHHHHHHHHHHSC
T ss_pred             HHhcCCCCCeeCCCCCCc---------cccCCHHHHHHHHHhhc
Confidence             55   88999988  99         99999999999988764

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.87  E-value=6.7e-23  Score=173.84  Aligned_cols=133  Identities=17%  Similarity=0.298  Sum_probs=122.3

Q ss_pred             CCCceec--ccccccccChhHHHHHHHhcCCCcccccCccccCCCcceecC--CCCCCCCCCCCccCChhhHhhhh-ccc
Q 038715            2 ATNRYIC--EVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCP--KPNCVHHHPSRALGDLTGVKKHF-CRK   76 (332)
Q Consensus         2 ~~k~~~C--~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~--~C~C~~~~~~~~f~~~~~L~~H~-~~h   76 (332)
                      ++++|.|  +.|++.|.+...|..|+++|.             ++++|.|+  .|       ++.|.....|..|+ +.|
T Consensus        39 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~~h   98 (190)
T 1tf6_A           39 GEKPFPCKEEGCEKGFTSLHHLTRHSLTHT-------------GEKNFTCDSDGC-------DLRFTTKANMKKHFNRFH   98 (190)
T ss_dssp             CCCSSCCSSTTCCCCCSSHHHHHHHHTTTT-------------TCCCEECCSSSC-------CCEESCHHHHHHHHHTTS
T ss_pred             CCCCccCCCCCCChhhCCHHHHHHHHHHcc-------------CCCceeCCCCCC-------CCccCCHHHHHHHHHHhc
Confidence            5789999  899999999999999999998             88999999  78       99999999999999 777


Q ss_pred             -cCCCcccc--ccChhhhcCchhhHHHHHH-hCCCCeee--e-cCCccccchhHhhcCCccchhhhhccCCCCccCCCCc
Q 038715           77 -HGEKKWKC--DKCSKCYAVQSDWKAHTKI-CGTREHRC--D-CGIIFSSQNLAASGGMAQSQAQELFSSSMPSTDSDSN  149 (332)
Q Consensus        77 -~~ek~~~C--~~C~~~f~~~~~L~~H~~~-h~~k~~~C--~-C~k~f~~~~~l~~h~~~~~~~~~~~~~~~~~~c~~c~  149 (332)
                       .++++|.|  +.|++.|.+...|..|+++ +++++|.|  + |++.|.+...|..                        
T Consensus        99 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~------------------------  154 (190)
T 1tf6_A           99 NIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKR------------------------  154 (190)
T ss_dssp             STTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHH------------------------
T ss_pred             CCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHH------------------------
Confidence             47889999  9999999999999999999 58999999  5 9999999999984                        


Q ss_pred             ccccCCCCcccccccCCCCceeccc---ccccccCcccccccccC
Q 038715          150 TNIRMNPSISRDNIENSLRPLSMSS---VGVMVSSNLDPILTSRV  191 (332)
Q Consensus       150 ~~f~~~~~~~h~~~h~~~k~~~C~~---C~k~F~~~~~L~~H~~~  191 (332)
                                |+++|++   |.|..   |++.|.+...|..|+++
T Consensus       155 ----------H~~~H~~---~~C~~~~~C~~~f~~~~~l~~H~~~  186 (190)
T 1tf6_A          155 ----------HEKVHAG---YPCKKDDSCSFVGKTWTLYLKHVAE  186 (190)
T ss_dssp             ----------HHTSSCS---CCCCSTTTCCCCCSCHHHHHHHHTT
T ss_pred             ----------HHHHhCC---CcCCCCCcCCCccccHHHHHHHHHh
Confidence                      7788887   88988   99999999999999876

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.85  E-value=3.7e-22  Score=159.72  Aligned_cols=100  Identities=22%  Similarity=0.341  Sum_probs=87.4

Q ss_pred             CCCceecccccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCc
Q 038715            2 ATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKK   81 (332)
Q Consensus         2 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~   81 (332)
                      |+++|.|++|++.|.+...|..|+++|.             ++++|.|+.|       ++.|.....|..|+++|++++|
T Consensus        19 Gek~y~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~   78 (133)
T 2lt7_A           19 GRVYYICIVCKRSYVCLTSLRRHFNIHS-------------WEKKYPCRYC-------EKVFPLAEYRTKHEIHHTGERR   78 (133)
T ss_dssp             TEEEEEETTTCCEESCHHHHHHHHHHHH-------------CCSCEECSSS-------SCEESSHHHHHHHHHHHHTCCC
T ss_pred             CCcCeECCCCCCCcCCHHHHHHHHHHcC-------------CCCCeeCCcc-------CeecccccchhhhccccCCCcc
Confidence            7889999999999999999999999987             7889999999       9999999999999999999999


Q ss_pred             cccccChhhhcCchhhHHHHHH-hCC------CCeeee-cCCccccch
Q 038715           82 WKCDKCSKCYAVQSDWKAHTKI-CGT------REHRCD-CGIIFSSQN  121 (332)
Q Consensus        82 ~~C~~C~~~f~~~~~L~~H~~~-h~~------k~~~C~-C~k~f~~~~  121 (332)
                      |.|++|++.|.+...|..|+++ |++      ++|+|. |++.|....
T Consensus        79 ~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~~  126 (133)
T 2lt7_A           79 YQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQY  126 (133)
T ss_dssp             EEESSSCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCCC
T ss_pred             ccCCCCCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhcc
Confidence            9999999999999999999998 655      458887 888877643

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.84  E-value=2.5e-21  Score=152.55  Aligned_cols=104  Identities=27%  Similarity=0.538  Sum_probs=94.7

Q ss_pred             CCCCceecc--cccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccC
Q 038715            1 MATNRYICE--VCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHG   78 (332)
Q Consensus         1 ~~~k~~~C~--~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~   78 (332)
                      |++++|.|+  .|++.|.+...|..|++.|              +.++|.|+.|       ++.|.....|..|++.|.+
T Consensus         1 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h--------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~   59 (124)
T 1ubd_C            1 MEPRTIACPHKGCTKMFRDNSAMRKHLHTH--------------GPRVHVCAEC-------GKAFVESSKLKRHQLVHTG   59 (124)
T ss_dssp             ----CEECCSTTCCCEESSHHHHHHHHGGG--------------SCCCEECTTT-------CCEESSHHHHHHHGGGTSC
T ss_pred             CCCCcccCCCCCCcCccCCHHHHHHHHHHc--------------CCCCeECCCC-------CchhCCHHHHHHHHHHcCC
Confidence            568999999  8999999999999999988              5789999999       9999999999999999999


Q ss_pred             CCcccccc--ChhhhcCchhhHHHHHH-hCCCCeee--e-cCCccccchhHhh
Q 038715           79 EKKWKCDK--CSKCYAVQSDWKAHTKI-CGTREHRC--D-CGIIFSSQNLAAS  125 (332)
Q Consensus        79 ek~~~C~~--C~~~f~~~~~L~~H~~~-h~~k~~~C--~-C~k~f~~~~~l~~  125 (332)
                      +++|.|+.  |++.|.+...|..|+++ +++++|.|  + |++.|.+...|..
T Consensus        60 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~  112 (124)
T 1ubd_C           60 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKS  112 (124)
T ss_dssp             CCCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHH
T ss_pred             CCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHH
Confidence            99999986  99999999999999999 69999999  5 9999999988883

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.83  E-value=3e-21  Score=158.11  Aligned_cols=112  Identities=20%  Similarity=0.319  Sum_probs=92.7

Q ss_pred             CCCceecccccccccChhHHHHHHHh-cCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCC
Q 038715            2 ATNRYICEVCHKGFQRDQNLQLHRKG-HNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEK   80 (332)
Q Consensus         2 ~~k~~~C~~C~k~f~~~~~L~~H~~~-h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek   80 (332)
                      ++.+|.|..|++.|.+...|..|++. |.+....     .......|.|+.|       ++.|.....|..|+++|++++
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~-----~~~~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~   89 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQ-----NNHVCYWEECPRE-------GKSFKAKYKLVNHIRVHTGEK   89 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTC-----SSCCCCBTTCTTS-------SCCCSSHHHHHHHTHHHHCCC
T ss_pred             hhcccccccCCcccCCHHHHHHHHHhhcCCCccc-----CCccccccCCCCc-------ccccCCHHHHHHHHHhcCCCC
Confidence            35679999999999999999999987 6411000     0001123789999       999999999999999999999


Q ss_pred             cccccc--ChhhhcCchhhHHHHHH-hCCCCeeee---cCCccccchhHhh
Q 038715           81 KWKCDK--CSKCYAVQSDWKAHTKI-CGTREHRCD---CGIIFSSQNLAAS  125 (332)
Q Consensus        81 ~~~C~~--C~~~f~~~~~L~~H~~~-h~~k~~~C~---C~k~f~~~~~l~~  125 (332)
                      +|.|+.  |++.|.+...|..|+++ +++++|.|.   |++.|.....|..
T Consensus        90 ~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~  140 (155)
T 2rpc_A           90 PFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKK  140 (155)
T ss_dssp             SEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHH
T ss_pred             cccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHH
Confidence            999988  99999999999999999 688999996   9999999988884

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.83  E-value=7.2e-21  Score=149.58  Aligned_cols=105  Identities=21%  Similarity=0.460  Sum_probs=99.0

Q ss_pred             CCCCceecccccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhcc---cc
Q 038715            1 MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCR---KH   77 (332)
Q Consensus         1 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~---h~   77 (332)
                      +|+++|+|+.|++.|.....|..|++.|.             ++++|.|+.|       ++.|.....|..|++.   +.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~~~~~~   62 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHT-------------GEKPFECPKC-------GKCYFRKENLLEHEARNCMNR   62 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHS-------------SCCSCBCTTT-------CCBCSSHHHHHHHHHHCCCCS
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCC-------------CCCCeECCCC-------CchhcCHHHHHHHHhhhhcCC
Confidence            47899999999999999999999999998             7899999999       9999999999999985   67


Q ss_pred             CCCccccccChhhhcCchhhHHHHHH-hCCCCeeee-cCCccccchhHhh
Q 038715           78 GEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRCD-CGIIFSSQNLAAS  125 (332)
Q Consensus        78 ~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C~-C~k~f~~~~~l~~  125 (332)
                      ++++|.|++|++.|.+...|..|+++ +++++|.|+ |++.|.+...|..
T Consensus        63 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~  112 (124)
T 2dlq_A           63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQS  112 (124)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHH
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHH
Confidence            88999999999999999999999999 689999999 9999999999984

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.83  E-value=5.9e-21  Score=149.09  Aligned_cols=105  Identities=23%  Similarity=0.547  Sum_probs=99.8

Q ss_pred             CCCCceeccc--ccccccChhHHHHHHHhcCCCcccccCccccCCCcceecC--CCCCCCCCCCCccCChhhHhhhhccc
Q 038715            1 MATNRYICEV--CHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCP--KPNCVHHHPSRALGDLTGVKKHFCRK   76 (332)
Q Consensus         1 ~~~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~--~C~C~~~~~~~~f~~~~~L~~H~~~h   76 (332)
                      +++++|.|..  |++.|.+...|..|++.|.             ++++|.|+  .|       ++.|.....|..|++.|
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h   61 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHT-------------GEKPYQCDFKDC-------ERRFSRSDQLKRHQRRH   61 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHH-------------TTCCEECCSTTC-------CCEESSHHHHHHHHHHH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhC-------------CCCCccCCCCCC-------cCccCCHHHHHHHHHHc
Confidence            4789999997  9999999999999999997             78999999  68       99999999999999999


Q ss_pred             cCCCccccccChhhhcCchhhHHHHHH-hCCCCeee--e-cCCccccchhHhh
Q 038715           77 HGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRC--D-CGIIFSSQNLAAS  125 (332)
Q Consensus        77 ~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C--~-C~k~f~~~~~l~~  125 (332)
                      .++++|.|++|++.|.+...|..|+++ +++++|.|  + |++.|.+...|..
T Consensus        62 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~  114 (119)
T 2jp9_A           62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVR  114 (119)
T ss_dssp             HCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHH
T ss_pred             CCCCCccCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHH
Confidence            999999999999999999999999999 69999999  7 9999999999985

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.82  E-value=3.6e-21  Score=153.94  Aligned_cols=110  Identities=22%  Similarity=0.347  Sum_probs=85.3

Q ss_pred             cccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCeeee-cCCc
Q 038715           39 TTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRCD-CGII  116 (332)
Q Consensus        39 ~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C~-C~k~  116 (332)
                      .++.++++|.|++|       ++.|.....|..|+++|++++||.|++|++.|.+...|..|+++ .+++||.|+ |++.
T Consensus        15 ~~h~Gek~y~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~   87 (133)
T 2lt7_A           15 LIVDGRVYYICIVC-------KRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKS   87 (133)
T ss_dssp             EEETTEEEEEETTT-------CCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCE
T ss_pred             eecCCCcCeECCCC-------CCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCC
Confidence            34458889999998       89999999999999999999999999999999999999999888 488999998 9999


Q ss_pred             cccchhHhhcCCccchhhhhccCCCCccCCCCcccccCCCCcccccccCCCCceecccccccccCcc
Q 038715          117 FSSQNLAASGGMAQSQAQELFSSSMPSTDSDSNTNIRMNPSISRDNIENSLRPLSMSSVGVMVSSNL  183 (332)
Q Consensus       117 f~~~~~l~~h~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~~~h~~~h~~~k~~~C~~C~k~F~~~~  183 (332)
                      |.+...|.       .|++++.+++|+.+                     .++|+|.+|++.|....
T Consensus        88 F~~~~~L~-------~H~~~hh~~~p~~~---------------------~k~~~C~~C~k~~~~~~  126 (133)
T 2lt7_A           88 FINYQFMS-------SHIKSVHSQDPSGD---------------------SKLYRLHPCRSLQIRQY  126 (133)
T ss_dssp             ESSHHHHH-------HHHHHHTCCCTTSS---------------------SCCEEECCCCSSCCCCC
T ss_pred             cCCHHHHH-------HHhHHhcCCCCCCC---------------------CCCeecCCCCchhhhcc
Confidence            99988888       34444444333221                     23577777777665443

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.82  E-value=3.5e-21  Score=151.41  Aligned_cols=54  Identities=26%  Similarity=0.460  Sum_probs=39.4

Q ss_pred             CCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccChhhhcCchhhHHHHHH
Q 038715           43 KKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI  103 (332)
Q Consensus        43 ~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~  103 (332)
                      ++++|.|+.|       ++.|.....|..|++.|.++++|.|++|++.|.+...|..|++.
T Consensus         4 ~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   57 (124)
T 2dlq_A            4 GSSGVECPTC-------HKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEAR   57 (124)
T ss_dssp             CCSSCCCTTT-------CCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCCCCCCCCC-------CCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhh
Confidence            5667777777       77777777777777777777777777777777777777777664

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.81  E-value=3.2e-21  Score=150.60  Aligned_cols=108  Identities=19%  Similarity=0.412  Sum_probs=96.9

Q ss_pred             CCcceecCC--CCCCCCCCCCccCChhhHhhhhccccCCCccccc--cChhhhcCchhhHHHHHH-hCCCCeeee-cCCc
Q 038715           43 KKGVYVCPK--PNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCD--KCSKCYAVQSDWKAHTKI-CGTREHRCD-CGII  116 (332)
Q Consensus        43 ~~~~~~C~~--C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~--~C~~~f~~~~~L~~H~~~-h~~k~~~C~-C~k~  116 (332)
                      ++++|.|++  |       ++.|.....|..|++.|.++++|.|+  .|++.|.+...|..|++. +++++|.|+ |++.
T Consensus         3 ~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   75 (119)
T 2jp9_A            3 EKRPFMCAYPGC-------NKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRK   75 (119)
T ss_dssp             SSCCBCCCSTTS-------CCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCE
T ss_pred             CCeeeeCCCCCC-------cchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCch
Confidence            678899987  7       99999999999999999999999998  799999999999999999 688999998 9999


Q ss_pred             cccchhHhhcCCccchhhhhccCCCCccCCCCcccccCCCCcccccccCCCCceec--ccccccccCcccccccccC
Q 038715          117 FSSQNLAASGGMAQSQAQELFSSSMPSTDSDSNTNIRMNPSISRDNIENSLRPLSM--SSVGVMVSSNLDPILTSRV  191 (332)
Q Consensus       117 f~~~~~l~~h~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~~~h~~~h~~~k~~~C--~~C~k~F~~~~~L~~H~~~  191 (332)
                      |.+...|..                                  |+++|++++||.|  +.|++.|.+...|..|+++
T Consensus        76 f~~~~~l~~----------------------------------H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~  118 (119)
T 2jp9_A           76 FSRSDHLKT----------------------------------HTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM  118 (119)
T ss_dssp             ESCHHHHHH----------------------------------HHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHT
T ss_pred             hCCHHHHHH----------------------------------HHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhc
Confidence            999888874                                  7788888889999  7899999999999988764

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.80  E-value=3.5e-20  Score=151.73  Aligned_cols=116  Identities=16%  Similarity=0.224  Sum_probs=101.5

Q ss_pred             CCCcceecCCCCCCCCCCCCccCChhhHhhhhcc-ccCCCc--------cccccChhhhcCchhhHHHHHH-hCCCCeee
Q 038715           42 VKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCR-KHGEKK--------WKCDKCSKCYAVQSDWKAHTKI-CGTREHRC  111 (332)
Q Consensus        42 ~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~-h~~ek~--------~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C  111 (332)
                      ..+..|.|+.|       ++.|.....|..|++. |.++.+        |.|++|++.|.+...|..|+++ +++++|.|
T Consensus        21 ~~~~~~~C~~C-------~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   93 (155)
T 2rpc_A           21 EAQLSRPKKSC-------DRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPC   93 (155)
T ss_dssp             TTCCSSSCCCC-------CCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEEC
T ss_pred             hhhcccccccC-------CcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccC
Confidence            36778999999       9999999999999987 776654        8999999999999999999999 68999999


Q ss_pred             e---cCCccccchhHhhcCCccchhhhhccCCCCccCCCCcccccCCCCcccccccCCCCceeccc--ccccccCccccc
Q 038715          112 D---CGIIFSSQNLAASGGMAQSQAQELFSSSMPSTDSDSNTNIRMNPSISRDNIENSLRPLSMSS--VGVMVSSNLDPI  186 (332)
Q Consensus       112 ~---C~k~f~~~~~l~~h~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~~~h~~~h~~~k~~~C~~--C~k~F~~~~~L~  186 (332)
                      .   |++.|.....|..                                  |+++|++++||.|.+  |++.|.+...|.
T Consensus        94 ~~~~C~~~f~~~~~L~~----------------------------------H~~~h~~~~~~~C~~~~C~k~f~~~~~L~  139 (155)
T 2rpc_A           94 PFPGCGKIFARSENLKI----------------------------------HKRTHTGEKPFKCEFEGCDRRFANSSDRK  139 (155)
T ss_dssp             SCTTTCCEESCHHHHHH----------------------------------HHTTTCSSCSBCCSSTTCCCCBSSHHHHH
T ss_pred             CcCCCCCccCCHHHHHH----------------------------------HHHhhCCCCCccCCCCCCCCccCCHHHHH
Confidence            4   9999999888884                                  778888888899986  999999988999


Q ss_pred             ccccC---CCCccCC
Q 038715          187 LTSRV---SKPYLSS  198 (332)
Q Consensus       187 ~H~~~---~~p~~C~  198 (332)
                      +|+++   ++||+|+
T Consensus       140 ~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A          140 KHMHVHTSDKSGPSS  154 (155)
T ss_dssp             HSSTTTTSCCCSCSC
T ss_pred             HHHHHhcCCCCCCCC
Confidence            99888   8888885

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.78  E-value=3.7e-20  Score=145.77  Aligned_cols=107  Identities=20%  Similarity=0.378  Sum_probs=77.7

Q ss_pred             CCcceecC--CCCCCCCCCCCccCChhhHhhhhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCeeee---cCCc
Q 038715           43 KKGVYVCP--KPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRCD---CGII  116 (332)
Q Consensus        43 ~~~~~~C~--~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C~---C~k~  116 (332)
                      ..++|.|+  .|       ++.|.....|..|+++| ++++|.|++|++.|.+...|..|++. +++++|.|.   |++.
T Consensus         2 ~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~   73 (124)
T 1ubd_C            2 EPRTIACPHKGC-------TKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKR   73 (124)
T ss_dssp             ---CEECCSTTC-------CCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCE
T ss_pred             CCCcccCCCCCC-------cCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCc
Confidence            35678888  67       88888888888888888 77888888888888888888888887 577888883   8888


Q ss_pred             cccchhHhhcCCccchhhhhccCCCCccCCCCcccccCCCCcccccccCCCCceecc--cccccccCcccccccccC
Q 038715          117 FSSQNLAASGGMAQSQAQELFSSSMPSTDSDSNTNIRMNPSISRDNIENSLRPLSMS--SVGVMVSSNLDPILTSRV  191 (332)
Q Consensus       117 f~~~~~l~~h~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~~~h~~~h~~~k~~~C~--~C~k~F~~~~~L~~H~~~  191 (332)
                      |.....|..                                  |+++|.++++|.|+  .|++.|.+...|..|+++
T Consensus        74 f~~~~~l~~----------------------------------H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~  116 (124)
T 1ubd_C           74 FSLDFNLRT----------------------------------HVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT  116 (124)
T ss_dssp             ESCHHHHHH----------------------------------HHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHH
T ss_pred             cCCHHHHHH----------------------------------HHHHhCCCCceECCCCCCCCccCCHHHHHHHHHH
Confidence            888777773                                  55555666666664  366666666666666555

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.72  E-value=8.3e-18  Score=128.48  Aligned_cols=90  Identities=22%  Similarity=0.511  Sum_probs=81.2

Q ss_pred             CCCceecccccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCc
Q 038715            2 ATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKK   81 (332)
Q Consensus         2 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~   81 (332)
                      ++++|.|..|++.|.....|..|++.|.             ++++|.|+.|       ++.|.....|..|++.|.++++
T Consensus        14 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~   73 (106)
T 2ee8_A           14 TKKEFICKFCGRHFTKSYNLLIHERTHT-------------DERPYTCDIC-------HKAFRRQDHLRDHRYIHSKEKP   73 (106)
T ss_dssp             CCCCCBCSSSCCBCSSHHHHHHHHHHHC-------------CSCCCBCSSS-------CCBCSCHHHHHHHGGGSCCCCT
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHHHcC-------------CCCCcCCCCc-------cchhCCHHHHHHHHHHhCCCCC
Confidence            4678999999999999999999999997             7889999999       9999999999999999999999


Q ss_pred             cccccChhhhcCchhhHHHHHH-hCCCCeee
Q 038715           82 WKCDKCSKCYAVQSDWKAHTKI-CGTREHRC  111 (332)
Q Consensus        82 ~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C  111 (332)
                      |.|.+|++.|.+...|..|+++ +++++|.+
T Consensus        74 ~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           74 FKCQECGKGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             TSCSSSCCCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             eECCCcCCcccCHHHHHHHHHHhCCCCCCcC
Confidence            9999999999999999999998 57887753

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.70  E-value=1.2e-17  Score=125.21  Aligned_cols=87  Identities=26%  Similarity=0.469  Sum_probs=76.0

Q ss_pred             CCCceecccccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCc
Q 038715            2 ATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKK   81 (332)
Q Consensus         2 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~   81 (332)
                      ++++|.|+.|++.|.+...|..|++.|.             ++++|.|+.|       ++.|.....|..|++.|.++++
T Consensus         5 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~   64 (96)
T 2dmd_A            5 SSGPHKCEVCGKCFSRKDKLKTHMRCHT-------------GVKPYKCKTC-------DYAAADSSSLNKHLRIHSDERP   64 (96)
T ss_dssp             CCCCCCBTTTTBCCCCHHHHHHHGGGCC-------------CCCSEECSSS-------CCEESSHHHHHHHHHHSCCCCC
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHHhcC-------------CCCCEeCCCC-------CCccCCHHHHHHHHHHhCCCCC
Confidence            5788999999999999999999998887             7788999998       8999999999999999998999


Q ss_pred             cccccChhhhcCchhhHHHHHH-hCCCC
Q 038715           82 WKCDKCSKCYAVQSDWKAHTKI-CGTRE  108 (332)
Q Consensus        82 ~~C~~C~~~f~~~~~L~~H~~~-h~~k~  108 (332)
                      |.|++|++.|.....|..|+++ +++++
T Consensus        65 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~   92 (96)
T 2dmd_A           65 FKCQICPYASRNSSQLTVHLRSHTGDSG   92 (96)
T ss_dssp             EECSSSSCEESSHHHHHHHHTTCCSCCC
T ss_pred             ccCCCCCCccCCHHHHHHHHHHhcCCCC
Confidence            9999999999999999999888 55553

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.69  E-value=3.5e-17  Score=122.37  Aligned_cols=85  Identities=22%  Similarity=0.443  Sum_probs=79.7

Q ss_pred             CCCCceecccccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCC-
Q 038715            1 MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGE-   79 (332)
Q Consensus         1 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~e-   79 (332)
                      +++++|.|..|++.|.....|..|++.|.             ++++|.|+.|       ++.|.....|..|++.|+++ 
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~   62 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHS-------------GEKPYSCPVC-------GLRFKRKDRMSYHVRSHDGSV   62 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSC-------------SSCSEECSSS-------CCEESCHHHHHHHHHHHCCCC
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcC-------------CCCCCcCCCC-------CCccCCHHHHHHHHHHhcCCC
Confidence            47899999999999999999999999998             7899999999       99999999999999999987 


Q ss_pred             -CccccccChhhhcCchhhHHHHHH-hC
Q 038715           80 -KKWKCDKCSKCYAVQSDWKAHTKI-CG  105 (332)
Q Consensus        80 -k~~~C~~C~~~f~~~~~L~~H~~~-h~  105 (332)
                       ++|.|++|++.|.+...|..|++. |.
T Consensus        63 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~   90 (95)
T 2yt9_A           63 GKPYICQSCGKGFSRPDHLNGHIKQVHS   90 (95)
T ss_dssp             CSSBCCSSSCCCBSSHHHHHHHHHHTSC
T ss_pred             CCceECCCccchhCCHHHHHHHHHHhcC
Confidence             899999999999999999999986 74

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.69  E-value=1.4e-17  Score=123.23  Aligned_cols=86  Identities=26%  Similarity=0.509  Sum_probs=77.3

Q ss_pred             CCCceecc--cccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCC
Q 038715            2 ATNRYICE--VCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGE   79 (332)
Q Consensus         2 ~~k~~~C~--~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~e   79 (332)
                      |++||.|+  .|++.|.....|..|++.|.             ++++|.|+.|       ++.|.....|..|+++|+++
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~   60 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHT-------------GQKPFQCRIC-------MRNFSRSDHLTTHIRTHTGE   60 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHH-------------CCCCEECTTT-------CCEESCHHHHHHHHHHHHCC
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhC-------------CCCCccCCCC-------CcccCCHHHHHHHHHHcCCC
Confidence            57899998  69999999999999999997             7889999999       99999999999999999999


Q ss_pred             CccccccChhhhcCchhhHHHHHH-hCCC
Q 038715           80 KKWKCDKCSKCYAVQSDWKAHTKI-CGTR  107 (332)
Q Consensus        80 k~~~C~~C~~~f~~~~~L~~H~~~-h~~k  107 (332)
                      ++|.|+.|++.|.+...|..|+++ ++++
T Consensus        61 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           61 KPFACDICGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGGGGC--
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcccC
Confidence            999999999999999999999999 4654

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=3.9e-18  Score=132.39  Aligned_cols=37  Identities=22%  Similarity=0.357  Sum_probs=32.2

Q ss_pred             hhHhhhhccccCCCccccccChhhhcCchhhHHHHHH
Q 038715           67 TGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI  103 (332)
Q Consensus        67 ~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~  103 (332)
                      ..|..|+++|+++++|.|++|++.|.....|..|++.
T Consensus         5 ~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~   41 (115)
T 2dmi_A            5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNE   41 (115)
T ss_dssp             CCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHH
T ss_pred             hhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHH
Confidence            4588899999999999999999999999999888886

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.67  E-value=3.6e-17  Score=125.29  Aligned_cols=87  Identities=17%  Similarity=0.198  Sum_probs=65.5

Q ss_pred             CCCceecccccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCc
Q 038715            2 ATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKK   81 (332)
Q Consensus         2 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~   81 (332)
                      ++++|+|+.|++.|.....|..|++.|.               ++|.|+.|       ++.|.....|..|++ |+++++
T Consensus        13 ~~~~~~C~~C~~~f~~~~~l~~H~~~H~---------------~~~~C~~C-------~~~f~~~~~l~~H~~-H~~~~~   69 (107)
T 1wjp_A           13 NKEVYQCRLCNAKLSSLLEQGSHERLCR---------------NAAVCPYC-------SLRFFSPELKQEHES-KCEYKK   69 (107)
T ss_dssp             CCCCCBCTTTCCBCSSHHHHHHHHHHHH---------------HSBCCTTT-------CCCBSSHHHHHHHHH-HCSTGG
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHHHCC---------------CCccCCCC-------CCccCCHHHHHHHHH-cCCCCC
Confidence            5677788888888888778888877763               46777777       777877777777775 777777


Q ss_pred             cccccChhhhcCchhhHHHHHH-h-CCCCeee
Q 038715           82 WKCDKCSKCYAVQSDWKAHTKI-C-GTREHRC  111 (332)
Q Consensus        82 ~~C~~C~~~f~~~~~L~~H~~~-h-~~k~~~C  111 (332)
                      |.|++|++.|.....|..|++. | ++++|.|
T Consensus        70 ~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~  101 (107)
T 1wjp_A           70 LTCLECMRTFKSSFSIWRHQVEVHNQNNMAPT  101 (107)
T ss_dssp             GEEGGGTEECSSHHHHHHHHHHTSCCCCCCCC
T ss_pred             ccCccccchhCCHHHHHHHHHHHcCCCCCCCC
Confidence            8888888888888888888774 4 6666665

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.66  E-value=8.5e-18  Score=128.84  Aligned_cols=51  Identities=18%  Similarity=0.464  Sum_probs=26.5

Q ss_pred             hccccCCCccccccChhhhcCchhhHHHHHHhCCCCeeee-cCCccccchhHh
Q 038715           73 FCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCD-CGIIFSSQNLAA  124 (332)
Q Consensus        73 ~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~h~~k~~~C~-C~k~f~~~~~l~  124 (332)
                      ++.|.++++|.|++|++.|.....|..|+++| +++|.|. |++.|.....|.
T Consensus         8 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H-~~~~~C~~C~~~f~~~~~l~   59 (107)
T 1wjp_A            8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLC-RNAAVCPYCSLRFFSPELKQ   59 (107)
T ss_dssp             CCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHH-HHSBCCTTTCCCBSSHHHHH
T ss_pred             CcccCCCcCeECCCCCCccCCHHHHHHHHHHC-CCCccCCCCCCccCCHHHHH
Confidence            44455555555555555555555555555553 3455555 555555554444

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=9.4e-17  Score=123.47  Aligned_cols=83  Identities=20%  Similarity=0.398  Sum_probs=77.2

Q ss_pred             CCCCceecccccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCC
Q 038715            1 MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEK   80 (332)
Q Consensus         1 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek   80 (332)
                      +++++|.| .|++.|.....|..|++.|.             ++++|.|+.|       ++.|.....|..|+++|.+++
T Consensus         6 ~~~k~~~C-~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~   64 (110)
T 2csh_A            6 SGDKLYPC-QCGKSFTHKSQRDRHMSMHL-------------GLRPYGCGVC-------GKKFKMKHHLVGHMKIHTGIK   64 (110)
T ss_dssp             CCCCCEEC-TTSCEESSHHHHHHHHHHHS-------------CCCSEECTTT-------SCEESSSHHHHHHHTTTCCCC
T ss_pred             CCCCCEec-cCCCccCCHHHHHHHHHHcC-------------CCcCccCCCC-------CcccCCHHHHHHHHHHcCCCC
Confidence            47899999 89999999999999999997             7889999999       999999999999999999999


Q ss_pred             ccccccChhhhcCchhhHHHHHHh
Q 038715           81 KWKCDKCSKCYAVQSDWKAHTKIC  104 (332)
Q Consensus        81 ~~~C~~C~~~f~~~~~L~~H~~~h  104 (332)
                      +|.|++|++.|.....|..|++.|
T Consensus        65 ~~~C~~C~~~f~~~~~l~~H~~~~   88 (110)
T 2csh_A           65 PYECNICAKRFMWRDSFHRHVTSC   88 (110)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHH
T ss_pred             CeeCCCCcchhcCHHHHHHHHHHc
Confidence            999999999999999999999983

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.65  E-value=5.4e-17  Score=117.70  Aligned_cols=80  Identities=28%  Similarity=0.541  Sum_probs=75.8

Q ss_pred             ceecccccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcccc
Q 038715            5 RYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKC   84 (332)
Q Consensus         5 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C   84 (332)
                      ||.|+.|++.|.....|..|++.|.             ++++|.|+.|       ++.|.....|..|++.|+++++|.|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C   60 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHS-------------DTRPYPCQYC-------GKRFHQKSDMKKHTFIHTGEKPHKC   60 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHH-------------TCCCEECSSS-------CCEESSHHHHHHHHHHHHTCCCEEC
T ss_pred             CccCCCCcccccCchhHHHHHHHcC-------------CCCCeeCCcC-------ChhhCCHHHHHHHHHHhcCCCCCcC
Confidence            6999999999999999999999997             7889999999       9999999999999999999999999


Q ss_pred             ccChhhhcCchhhHHHHHHh
Q 038715           85 DKCSKCYAVQSDWKAHTKIC  104 (332)
Q Consensus        85 ~~C~~~f~~~~~L~~H~~~h  104 (332)
                      +.|++.|.+...|..|+++|
T Consensus        61 ~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A           61 QVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             TTTSCEESSHHHHHHHHHHH
T ss_pred             CCcchhhCChHHHHHHHHhh
Confidence            99999999999999999884

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=1.4e-16  Score=123.55  Aligned_cols=89  Identities=12%  Similarity=0.236  Sum_probs=75.1

Q ss_pred             CCCCceecccccccccChhHHHHHHHh--cCCCcccccCccccCCCcce-ecCCCCCCCCCCCCcc--CChhhHhhhhcc
Q 038715            1 MATNRYICEVCHKGFQRDQNLQLHRKG--HNLPWKLMQRPTTQVKKGVY-VCPKPNCVHHHPSRAL--GDLTGVKKHFCR   75 (332)
Q Consensus         1 ~~~k~~~C~~C~k~f~~~~~L~~H~~~--h~~~~~l~~~~~~~~~~~~~-~C~~C~C~~~~~~~~f--~~~~~L~~H~~~   75 (332)
                      ++++||.|+.|++.|.+...|..|++.  |.             ..+++ .|+.|       ++.|  .....|..|+++
T Consensus        15 ~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~-------------~~~~~~~C~~C-------~~~f~f~~~~~l~~H~~~   74 (115)
T 2dmi_A           15 TGASKFRCKDCSAAYDTLVELTVHMNETGHY-------------RDDNHETDNNN-------PKRWSKPRKRSLLEMEGK   74 (115)
T ss_dssp             CCCCSEEBSSSSCEESSHHHHHHHHHHTCCC-------------BCSCCCCCCCC-------CSCCSSCCCCCCCCCCCS
T ss_pred             CCCCCEECCccCchhcCHHHHHHHHHHhCcc-------------ccCCCccCCCC-------CcccccccHHHHHHHhhc
Confidence            367899999999999999999999988  54             45544 59999       8777  888999999999


Q ss_pred             ccCCCccccccChhhhcCchhhHHHHHH-hCCCCe
Q 038715           76 KHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREH  109 (332)
Q Consensus        76 h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~  109 (332)
                      |++++||.|++|++.|.....|..|+++ |.....
T Consensus        75 H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~~~  109 (115)
T 2dmi_A           75 EDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKV  109 (115)
T ss_dssp             CCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTTTCS
T ss_pred             cCCCcceECCCCCCccCCHHHHHHHHHHhCCcccC
Confidence            9999999999999999999999999998 554443

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.60  E-value=1.1e-15  Score=114.35  Aligned_cols=77  Identities=21%  Similarity=0.378  Sum_probs=73.3

Q ss_pred             CCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCeeee-cCCcccc
Q 038715           42 VKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRCD-CGIIFSS  119 (332)
Q Consensus        42 ~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C~-C~k~f~~  119 (332)
                      .++++|.|+.|       ++.|.....|..|++.|.++++|.|++|++.|.....|..|++. +++++|.|. |++.|..
T Consensus         4 ~~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   76 (96)
T 2dmd_A            4 GSSGPHKCEVC-------GKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRN   76 (96)
T ss_dssp             CCCCCCCBTTT-------TBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESS
T ss_pred             CCCcCeECCCC-------CCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCC
Confidence            37889999999       99999999999999999999999999999999999999999999 689999999 9999999


Q ss_pred             chhHhh
Q 038715          120 QNLAAS  125 (332)
Q Consensus       120 ~~~l~~  125 (332)
                      ...|..
T Consensus        77 ~~~l~~   82 (96)
T 2dmd_A           77 SSQLTV   82 (96)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999984

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.60  E-value=7e-16  Score=117.66  Aligned_cols=77  Identities=22%  Similarity=0.433  Sum_probs=72.0

Q ss_pred             CCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCeeee-cCCcccc
Q 038715           42 VKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRCD-CGIIFSS  119 (332)
Q Consensus        42 ~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C~-C~k~f~~  119 (332)
                      ..+++|.|+.|       ++.|.....|..|++.|.++++|.|++|++.|.....|..|++. +++++|.|. |++.|..
T Consensus        13 ~~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   85 (106)
T 2ee8_A           13 KTKKEFICKFC-------GRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQ   85 (106)
T ss_dssp             CCCCCCBCSSS-------CCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSS
T ss_pred             CCCcCeECCCC-------CCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccC
Confidence            36788999999       99999999999999999999999999999999999999999999 688999999 9999999


Q ss_pred             chhHhh
Q 038715          120 QNLAAS  125 (332)
Q Consensus       120 ~~~l~~  125 (332)
                      ...|..
T Consensus        86 ~~~L~~   91 (106)
T 2ee8_A           86 SRTLAV   91 (106)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999983

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.60  E-value=2.1e-16  Score=116.67  Aligned_cols=81  Identities=17%  Similarity=0.280  Sum_probs=77.4

Q ss_pred             CCceecccccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcc
Q 038715            3 TNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKW   82 (332)
Q Consensus         3 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~   82 (332)
                      ++||.|+.|++.|.....|..|+++|.             ++++|.|+.|       ++.|.....|..|++.|++ .+|
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C-------~k~f~~~~~L~~H~~~h~~-~~~   59 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHT-------------GEKPFACDIC-------GRKFARSDERKRHRDIQHI-LPI   59 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH-------------CCCCEECTTT-------CCEESSHHHHHHHHHHHTH-HHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcC-------------CCCCccCCCC-------CCccCCHHHHHHHHHHhCC-Ccc
Confidence            689999999999999999999999997             8899999999       9999999999999999985 789


Q ss_pred             ccccChhhhcCchhhHHHHHH-h
Q 038715           83 KCDKCSKCYAVQSDWKAHTKI-C  104 (332)
Q Consensus        83 ~C~~C~~~f~~~~~L~~H~~~-h  104 (332)
                      .|+.|++.|.....|..|++. |
T Consensus        60 ~c~~C~~~f~~~~~L~~H~~~~h   82 (88)
T 1llm_C           60 LEDKVEELLSKNYHLENEVARLK   82 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHH
Confidence            999999999999999999998 6

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.59  E-value=6.6e-16  Score=105.36  Aligned_cols=58  Identities=21%  Similarity=0.491  Sum_probs=52.7

Q ss_pred             CCceecccccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCC
Q 038715            3 TNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEK   80 (332)
Q Consensus         3 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek   80 (332)
                      ||||+|++||+.|.....|..|+++|+             ++++|.|++|       ++.|...+.|..|+++|++++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht-------------~ekp~~C~~C-------~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHL-------------GYRPRSCPEC-------GKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHH-------------TCCCEECTTT-------CCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhC-------------CCcCeECCCC-------CCCcCCHHHHHHHhCccCCCC
Confidence            789999999999999999999999998             8899999999       999999999999999998874

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.59  E-value=7.5e-16  Score=113.49  Aligned_cols=82  Identities=20%  Similarity=0.517  Sum_probs=72.1

Q ss_pred             CCceeccc--ccccccChhHHHHHHHhcCCCcccccCccccCCCcceecC--CCCCCCCCCCCccCChhhHhhhhccccC
Q 038715            3 TNRYICEV--CHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCP--KPNCVHHHPSRALGDLTGVKKHFCRKHG   78 (332)
Q Consensus         3 ~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~--~C~C~~~~~~~~f~~~~~L~~H~~~h~~   78 (332)
                      +++|.|+.  |++.|.....|..|++.|.             ++++|.|+  .|       ++.|.....|..|++.|++
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~   62 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHT-------------GEKPYHCDWDGC-------GWKFARSDELTRHYRKHTG   62 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSC-------------SSCCEECCSTTT-------CCEESSHHHHHHHHHHHHC
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcC-------------CCCCcCCCCCCC-------CCccCCHHHHHHHHHHcCC
Confidence            57889988  9999999999999998887             77889997  48       8999999999999999999


Q ss_pred             CCccccccChhhhcCchhhHHHHHHh
Q 038715           79 EKKWKCDKCSKCYAVQSDWKAHTKIC  104 (332)
Q Consensus        79 ek~~~C~~C~~~f~~~~~L~~H~~~h  104 (332)
                      +++|.|++|++.|.....|..|+++|
T Consensus        63 ~~~~~C~~C~~~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           63 HRPFQCQKCDRAFSRSDHLALHMKRH   88 (89)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHGGGG
T ss_pred             CCCccCCCCCcccCCHHHHHHHHHhh
Confidence            99999999999999999999998764

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.58  E-value=2.8e-16  Score=120.84  Aligned_cols=82  Identities=18%  Similarity=0.349  Sum_probs=49.2

Q ss_pred             cccCCCccccccChhhhcCchhhHHHHHH-hCCCCeeee-cCCccccchhHhhcCCccchhhhhccCCCCccCCCCcccc
Q 038715           75 RKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRCD-CGIIFSSQNLAASGGMAQSQAQELFSSSMPSTDSDSNTNI  152 (332)
Q Consensus        75 ~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C~-C~k~f~~~~~l~~h~~~~~~~~~~~~~~~~~~c~~c~~~f  152 (332)
                      .|+++++|.| .|++.|.+...|..|++. +++++|.|. |++.|.....|..                           
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~---------------------------   55 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVG---------------------------   55 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHH---------------------------
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHH---------------------------
Confidence            4566677777 677777777777777666 355556665 6666665555552                           


Q ss_pred             cCCCCcccccccCCCCceecccccccccCcccccccccC
Q 038715          153 RMNPSISRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV  191 (332)
Q Consensus       153 ~~~~~~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~  191 (332)
                             |+++|.++++|.|++|++.|.+...|..|+++
T Consensus        56 -------H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   87 (110)
T 2csh_A           56 -------HMKIHTGIKPYECNICAKRFMWRDSFHRHVTS   87 (110)
T ss_dssp             -------HHTTTCCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             -------HHHHcCCCCCeeCCCCcchhcCHHHHHHHHHH
Confidence                   55555555555555555555555555555443

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.58  E-value=1.1e-15  Score=112.80  Aligned_cols=75  Identities=21%  Similarity=0.566  Sum_probs=70.5

Q ss_pred             CcceecC--CCCCCCCCCCCccCChhhHhhhhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCeeee-cCCcccc
Q 038715           44 KGVYVCP--KPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRCD-CGIIFSS  119 (332)
Q Consensus        44 ~~~~~C~--~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C~-C~k~f~~  119 (332)
                      +++|.|+  .|       ++.|.....|..|++.|.++++|.|+.|++.|.+...|..|+++ +++++|.|. |++.|..
T Consensus         2 ~k~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   74 (90)
T 1a1h_A            2 ERPYACPVESC-------DRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR   74 (90)
T ss_dssp             -CCEECCSSSC-------CCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESS
T ss_pred             CCceECCCCCC-------CCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCC
Confidence            5789998  58       99999999999999999999999999999999999999999999 699999999 9999999


Q ss_pred             chhHhh
Q 038715          120 QNLAAS  125 (332)
Q Consensus       120 ~~~l~~  125 (332)
                      ...|..
T Consensus        75 ~~~l~~   80 (90)
T 1a1h_A           75 SDERKR   80 (90)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999984

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.58  E-value=1.9e-15  Score=113.87  Aligned_cols=82  Identities=18%  Similarity=0.476  Sum_probs=72.5

Q ss_pred             CCceeccc--ccccccChhHHHHHHHhcCCCcccccCccccCCCcceecC--CCCCCCCCCCCccCChhhHhhhhccccC
Q 038715            3 TNRYICEV--CHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCP--KPNCVHHHPSRALGDLTGVKKHFCRKHG   78 (332)
Q Consensus         3 ~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~--~C~C~~~~~~~~f~~~~~L~~H~~~h~~   78 (332)
                      +++|.|..  |++.|.....|..|++.|.             ++++|.|+  .|       ++.|.....|..|++.|++
T Consensus        13 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~   72 (100)
T 2ebt_A           13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHT-------------GEKPYKCTWEGC-------DWRFARSDELTRHYRKHTG   72 (100)
T ss_dssp             CCCEECCSSSCCCEESCHHHHHHHHHHHS-------------CCCCEECCSSSC-------CCEESSHHHHHHHHHHHTS
T ss_pred             CcceEcCCCCCCCcccCHHHHHHHHHHhC-------------CCCCeeCCCCCC-------CCccCCHHHHHHHHHHhCC
Confidence            56899986  9999999999999999887             77889996  47       8999999999999999999


Q ss_pred             CCccccccChhhhcCchhhHHHHHHh
Q 038715           79 EKKWKCDKCSKCYAVQSDWKAHTKIC  104 (332)
Q Consensus        79 ek~~~C~~C~~~f~~~~~L~~H~~~h  104 (332)
                      +++|.|++|++.|.....|..|+++|
T Consensus        73 ~~~~~C~~C~~~f~~~~~l~~H~~~H   98 (100)
T 2ebt_A           73 AKPFQCGVCNRSFSRSDHLALHMKRH   98 (100)
T ss_dssp             CCSCBCSSSCCBCSSHHHHHHHHHHH
T ss_pred             CCCeECCCCcCccCCHHHHHHHHHHh
Confidence            99999999999999999999998875

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.55  E-value=2.2e-15  Score=109.10  Aligned_cols=73  Identities=25%  Similarity=0.544  Sum_probs=70.0

Q ss_pred             ceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCeeee-cCCccccchhH
Q 038715           46 VYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRCD-CGIIFSSQNLA  123 (332)
Q Consensus        46 ~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C~-C~k~f~~~~~l  123 (332)
                      +|.|+.|       ++.|.....|..|++.|.++++|.|+.|++.|.+...|..|++. +++++|.|. |++.|.+...|
T Consensus         1 ~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   73 (82)
T 2kmk_A            1 SFDCKIC-------GKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNL   73 (82)
T ss_dssp             CEECSSS-------CCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHH
T ss_pred             CccCCCC-------cccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHH
Confidence            5899999       99999999999999999999999999999999999999999999 799999999 99999999999


Q ss_pred             hh
Q 038715          124 AS  125 (332)
Q Consensus       124 ~~  125 (332)
                      ..
T Consensus        74 ~~   75 (82)
T 2kmk_A           74 IT   75 (82)
T ss_dssp             HH
T ss_pred             HH
Confidence            84

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.54  E-value=4.4e-15  Score=106.90  Aligned_cols=71  Identities=18%  Similarity=0.419  Sum_probs=56.5

Q ss_pred             CCCCceeccc--ccccccChhHHHHHHH-hcCCCcccccCccccCCCcceecCC--CCCCCCCCCCccCChhhHhhhhcc
Q 038715            1 MATNRYICEV--CHKGFQRDQNLQLHRK-GHNLPWKLMQRPTTQVKKGVYVCPK--PNCVHHHPSRALGDLTGVKKHFCR   75 (332)
Q Consensus         1 ~~~k~~~C~~--C~k~f~~~~~L~~H~~-~h~~~~~l~~~~~~~~~~~~~~C~~--C~C~~~~~~~~f~~~~~L~~H~~~   75 (332)
                      +++++|.|..  |++.|.+...|..|++ .|.             ++++|.|++  |       ++.|.....|..|+++
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~-------------~~~~~~C~~~~C-------~k~f~~~~~L~~H~~~   62 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHI-------------HQKSFSCPEPAC-------GKSFNFKKHLKEHMKL   62 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGG-------------SCCCEECSCTTT-------CCEESSHHHHHHHHHH
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhC-------------CCCCeECCCCCC-------cCccCCHHHHHHHHHH
Confidence            3677888876  8888888888888887 576             677888887  7       8888888888888888


Q ss_pred             ccCCCccccccChhhh
Q 038715           76 KHGEKKWKCDKCSKCY   91 (332)
Q Consensus        76 h~~ek~~~C~~C~~~f   91 (332)
                      |+++++|.|++|++.|
T Consensus        63 H~~~~~~~C~~C~k~F   78 (79)
T 2dlk_A           63 HSDTRDYICEFSGPSS   78 (79)
T ss_dssp             HHTSCCCSCCSSSCCC
T ss_pred             hCCCCCeeCCCCCCCC
Confidence            8888888888888776

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.52  E-value=7.6e-15  Score=109.47  Aligned_cols=76  Identities=20%  Similarity=0.398  Sum_probs=72.1

Q ss_pred             CCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccChhhhcCchhhHHHHHH-hCC--CCeeee-cCCccc
Q 038715           43 KKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGT--REHRCD-CGIIFS  118 (332)
Q Consensus        43 ~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~--k~~~C~-C~k~f~  118 (332)
                      ++++|.|+.|       ++.|.....|..|++.|.++++|.|++|++.|.+...|..|++. +++  ++|.|. |++.|.
T Consensus         4 ~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~   76 (95)
T 2yt9_A            4 GSSGVACEIC-------GKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFS   76 (95)
T ss_dssp             CCSCEECSSS-------CCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBS
T ss_pred             CCCCeECCCC-------CCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhC
Confidence            7889999999       99999999999999999999999999999999999999999999 565  899999 999999


Q ss_pred             cchhHhh
Q 038715          119 SQNLAAS  125 (332)
Q Consensus       119 ~~~~l~~  125 (332)
                      ....|..
T Consensus        77 ~~~~L~~   83 (95)
T 2yt9_A           77 RPDHLNG   83 (95)
T ss_dssp             SHHHHHH
T ss_pred             CHHHHHH
Confidence            9999984

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.51  E-value=3.6e-15  Score=101.68  Aligned_cols=56  Identities=23%  Similarity=0.504  Sum_probs=49.8

Q ss_pred             CcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccChhhhcCchhhHHHHHHhCC
Q 038715           44 KGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGT  106 (332)
Q Consensus        44 ~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~h~~  106 (332)
                      |+||.|++|       ++.|.....|..|+++|++++||.|++|++.|...+.|..|+++|..
T Consensus         2 EKpy~C~~C-------~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htg   57 (60)
T 4gzn_C            2 ERPFFCNFC-------GKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN   57 (60)
T ss_dssp             CCCEECTTT-------CCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSC
T ss_pred             CCCccCCCC-------CCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCC
Confidence            688999999       99999999999999999999999999999999999999999888633

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=1.2e-14  Score=106.24  Aligned_cols=56  Identities=25%  Similarity=0.455  Sum_probs=43.1

Q ss_pred             HhhhhccccCCCccccccChhhhcCchhhHHHHHH-hCC----CCeeee-cCCccccchhHh
Q 038715           69 VKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGT----REHRCD-CGIIFSSQNLAA  124 (332)
Q Consensus        69 L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~----k~~~C~-C~k~f~~~~~l~  124 (332)
                      |..|+++|+++++|.|++|++.|.....|..|++. |.+    ++|.|. |++.|.....|.
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~   64 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMA   64 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHH
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHH
Confidence            56677888888888888888888888888888777 543    678887 888888777777

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.47  E-value=2.1e-14  Score=104.52  Aligned_cols=76  Identities=26%  Similarity=0.532  Sum_probs=72.5

Q ss_pred             ceec--ccccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCC--CCCCCCCCCCccCChhhHhhhhccccCCC
Q 038715            5 RYIC--EVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPK--PNCVHHHPSRALGDLTGVKKHFCRKHGEK   80 (332)
Q Consensus         5 ~~~C--~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~--C~C~~~~~~~~f~~~~~L~~H~~~h~~ek   80 (332)
                      ||.|  +.|++.|.....|..|++.|.             ++++|.|+.  |       ++.|.....|..|+++|++  
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~--   58 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHT-------------QQLPYECPHEGC-------DKRFSLPSRLKRHEKVHAG--   58 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHH-------------TTCCEECCSTTC-------CCEESSHHHHHHHHHHHHS--
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhC-------------CCCCeeCCCCCC-------cCccCCHHHHHHHHHHhCC--
Confidence            6999  999999999999999999997             889999998  9       9999999999999999998  


Q ss_pred             cccccc---ChhhhcCchhhHHHHHH
Q 038715           81 KWKCDK---CSKCYAVQSDWKAHTKI  103 (332)
Q Consensus        81 ~~~C~~---C~~~f~~~~~L~~H~~~  103 (332)
                       |.|..   |++.|.....|..|+++
T Consensus        59 -~~C~~~~~C~~~f~~~~~l~~H~~~   83 (85)
T 2j7j_A           59 -YPCKKDDSCSFVGKTWTLYLKHVAE   83 (85)
T ss_dssp             -EECCSCSSCCCEESSHHHHHHHHHH
T ss_pred             -CCCCCCCCCCCccCCHHHHHHHHHh
Confidence             99999   99999999999999987

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=5e-14  Score=100.96  Aligned_cols=52  Identities=25%  Similarity=0.547  Sum_probs=25.2

Q ss_pred             CCccCChhhHhhhhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCeee
Q 038715           60 SRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRC  111 (332)
Q Consensus        60 ~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C  111 (332)
                      ++.|.....|..|+++|+++++|.|++|++.|.....|..|+++ ++++||.|
T Consensus        25 ~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           25 GKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            44444444444444444444444444444444444444444444 34444443

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=4e-14  Score=107.26  Aligned_cols=68  Identities=19%  Similarity=0.294  Sum_probs=34.3

Q ss_pred             CCCceecccccccccChhHHHHHHH-hcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhh-hccccCC
Q 038715            2 ATNRYICEVCHKGFQRDQNLQLHRK-GHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKH-FCRKHGE   79 (332)
Q Consensus         2 ~~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H-~~~h~~e   79 (332)
                      |++||.|+.|++.|.....|..|++ .|.+.          .++++|.|+.|       ++.|.....|..| +++|+++
T Consensus        15 gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~----------~~ekpf~C~~C-------gk~F~~~~~L~~H~~r~Htge   77 (102)
T 2ghf_A           15 VEGGYECKYCTFQTPDLNMFTFHVDSEHPNV----------VLNSSYVCVEC-------NFLTKRYDALSEHNLKYHPGE   77 (102)
T ss_dssp             CCSSEECSSCSCEESCHHHHHHHHHHHCSSC----------CCSCCEEETTT-------TEEESSTHHHHTHHHHTSTTC
T ss_pred             CCcCcCCCCCCCccCCHHHHHHHHHhhCCCC----------CCCCCcCCCCC-------CcccCCHHHHHHHHHHhcCCC
Confidence            4555555555555555555555554 24100          03445555555       5555555555555 4555555


Q ss_pred             Ccccccc
Q 038715           80 KKWKCDK   86 (332)
Q Consensus        80 k~~~C~~   86 (332)
                      +||.|.+
T Consensus        78 kpy~C~~   84 (102)
T 2ghf_A           78 ENFKLTM   84 (102)
T ss_dssp             CCEEEEE
T ss_pred             CCeeCCc
Confidence            5555544

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.43  E-value=8.1e-14  Score=102.43  Aligned_cols=77  Identities=23%  Similarity=0.470  Sum_probs=71.2

Q ss_pred             CCcceecCC--CCCCCCCCCCccCChhhHhhhhccccCCCccccc--cChhhhcCchhhHHHHHH-hCCCCeeee-cCCc
Q 038715           43 KKGVYVCPK--PNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCD--KCSKCYAVQSDWKAHTKI-CGTREHRCD-CGII  116 (332)
Q Consensus        43 ~~~~~~C~~--C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~--~C~~~f~~~~~L~~H~~~-h~~k~~~C~-C~k~  116 (332)
                      ...+|.|++  |       ++.|.....|..|++.|.++++|.|+  .|++.|.....|..|++. +++++|.|. |++.
T Consensus         2 ~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   74 (89)
T 2wbs_A            2 RTATHTCDYAGC-------GKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRA   74 (89)
T ss_dssp             -CCCEECCSTTT-------CCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCE
T ss_pred             CCCCeeCCCCCC-------CCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcc
Confidence            356799999  8       99999999999999999999999997  699999999999999999 699999999 9999


Q ss_pred             cccchhHhhc
Q 038715          117 FSSQNLAASG  126 (332)
Q Consensus       117 f~~~~~l~~h  126 (332)
                      |.....|..|
T Consensus        75 f~~~~~l~~H   84 (89)
T 2wbs_A           75 FSRSDHLALH   84 (89)
T ss_dssp             ESSHHHHHHH
T ss_pred             cCCHHHHHHH
Confidence            9999999853

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=3.3e-14  Score=103.87  Aligned_cols=71  Identities=20%  Similarity=0.380  Sum_probs=64.7

Q ss_pred             ccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCC----CccccccChhhhcCchhhHHHHHH-hCCCCeeee-c
Q 038715           40 TQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGE----KKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRCD-C  113 (332)
Q Consensus        40 ~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~e----k~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C~-C  113 (332)
                      +|.++++|.|+.|       ++.|.....|..|++.|+.+    ++|.|++|++.|.....|..|+++ ++++++.|+ |
T Consensus         9 ~H~~~k~~~C~~C-------~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~   81 (86)
T 1x6h_A            9 THTGEKPYACSHC-------DKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS   81 (86)
T ss_dssp             TCCCCCCEECSSS-------SCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCC
T ss_pred             eecCCCCCcCCCC-------CCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCC
Confidence            3338999999999       99999999999999877765    789999999999999999999999 799999998 9


Q ss_pred             CCcc
Q 038715          114 GIIF  117 (332)
Q Consensus       114 ~k~f  117 (332)
                      +..|
T Consensus        82 ~~~~   85 (86)
T 1x6h_A           82 GPSS   85 (86)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8765

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.42  E-value=1e-13  Score=99.68  Aligned_cols=69  Identities=20%  Similarity=0.383  Sum_probs=64.4

Q ss_pred             CCcceecCC--CCCCCCCCCCccCChhhHhhhhc-cccCCCcccccc--ChhhhcCchhhHHHHHH-hCCCCeeee-cCC
Q 038715           43 KKGVYVCPK--PNCVHHHPSRALGDLTGVKKHFC-RKHGEKKWKCDK--CSKCYAVQSDWKAHTKI-CGTREHRCD-CGI  115 (332)
Q Consensus        43 ~~~~~~C~~--C~C~~~~~~~~f~~~~~L~~H~~-~h~~ek~~~C~~--C~~~f~~~~~L~~H~~~-h~~k~~~C~-C~k  115 (332)
                      ++++|.|+.  |       ++.|.....|..|++ .|.++++|.|++  |++.|.....|..|+++ +++++|.|+ |++
T Consensus         4 ~~~~~~C~~~~C-------~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k   76 (79)
T 2dlk_A            4 GSSGMPCDFPGC-------GRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGP   76 (79)
T ss_dssp             CCSSEECSSTTT-------CCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSC
T ss_pred             CCCCccCCCCCC-------cCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCC
Confidence            678899987  8       999999999999999 799999999999  99999999999999999 699999999 999


Q ss_pred             ccc
Q 038715          116 IFS  118 (332)
Q Consensus       116 ~f~  118 (332)
                      .|.
T Consensus        77 ~F~   79 (79)
T 2dlk_A           77 SSG   79 (79)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            884

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.42  E-value=1.4e-13  Score=103.38  Aligned_cols=76  Identities=24%  Similarity=0.483  Sum_probs=71.3

Q ss_pred             CCcceecCC--CCCCCCCCCCccCChhhHhhhhccccCCCccccc--cChhhhcCchhhHHHHHH-hCCCCeeee-cCCc
Q 038715           43 KKGVYVCPK--PNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCD--KCSKCYAVQSDWKAHTKI-CGTREHRCD-CGII  116 (332)
Q Consensus        43 ~~~~~~C~~--C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~--~C~~~f~~~~~L~~H~~~-h~~k~~~C~-C~k~  116 (332)
                      ..++|.|++  |       ++.|.....|..|++.|.++++|.|.  .|++.|.....|..|++. +++++|.|. |++.
T Consensus        12 ~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   84 (100)
T 2ebt_A           12 KRRIHYCDYPGC-------TKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRS   84 (100)
T ss_dssp             SCCCEECCSSSC-------CCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCB
T ss_pred             cCcceEcCCCCC-------CCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCc
Confidence            567899997  8       99999999999999999999999996  699999999999999999 689999999 9999


Q ss_pred             cccchhHhh
Q 038715          117 FSSQNLAAS  125 (332)
Q Consensus       117 f~~~~~l~~  125 (332)
                      |.....|..
T Consensus        85 f~~~~~l~~   93 (100)
T 2ebt_A           85 FSRSDHLAL   93 (100)
T ss_dssp             CSSHHHHHH
T ss_pred             cCCHHHHHH
Confidence            999999984

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.41  E-value=8.2e-15  Score=107.96  Aligned_cols=76  Identities=20%  Similarity=0.288  Sum_probs=71.4

Q ss_pred             CcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccChhhhcCchhhHHHHHHhCCCCeeee-cCCccccchh
Q 038715           44 KGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCD-CGIIFSSQNL  122 (332)
Q Consensus        44 ~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~h~~k~~~C~-C~k~f~~~~~  122 (332)
                      +++|.|+.|       ++.|.....|..|+++|.++++|.|+.|++.|.....|..|++.|...+|.|+ |++.|.....
T Consensus         1 ek~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~c~~C~~~f~~~~~   73 (88)
T 1llm_C            1 MKPFQCRIC-------MRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYH   73 (88)
T ss_dssp             CCCEECTTT-------CCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCC-------CCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhh
Confidence            478999999       99999999999999999999999999999999999999999999556899999 9999999999


Q ss_pred             Hhhc
Q 038715          123 AASG  126 (332)
Q Consensus       123 l~~h  126 (332)
                      |..|
T Consensus        74 L~~H   77 (88)
T 1llm_C           74 LENE   77 (88)
T ss_dssp             HHHH
T ss_pred             hHHH
Confidence            9864

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.41  E-value=1.7e-13  Score=97.38  Aligned_cols=59  Identities=22%  Similarity=0.485  Sum_probs=30.2

Q ss_pred             CCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccChhhhcCchhhHHHHHH-hCCCC
Q 038715           43 KKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTRE  108 (332)
Q Consensus        43 ~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~  108 (332)
                      ++++|.|+.|       ++.|.....|..|+++|+++++|+|.+|++.|.....|..|+++ ++++|
T Consensus        14 ~~~~~~C~~C-------~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   73 (74)
T 2lce_A           14 SDKPYKCDRC-------QASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP   73 (74)
T ss_dssp             CCCSBCCTTS-------SCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCC
T ss_pred             CCCCeECCCC-------CceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCC
Confidence            4445555555       55555555555555555555555555555555555555555554 24444

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.36  E-value=3.5e-13  Score=96.52  Aligned_cols=67  Identities=25%  Similarity=0.593  Sum_probs=61.0

Q ss_pred             hhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCeeee-cCCccccchhHhhcCCccchhhhhccCCCCccC
Q 038715           72 HFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRCD-CGIIFSSQNLAASGGMAQSQAQELFSSSMPSTD  145 (332)
Q Consensus        72 H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C~-C~k~f~~~~~l~~h~~~~~~~~~~~~~~~~~~c  145 (332)
                      +...+.++++|.|++|++.|.....|..|+++ +++++|.|+ |++.|.....|.       .|+++|.+++||.|
T Consensus         9 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~-------~H~~~H~~~~p~~C   77 (77)
T 2cot_A            9 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLI-------GHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHH-------HHGGGSCCCCCCCC
T ss_pred             CcCcCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHH-------HHHHHhCCCCCCCC
Confidence            34567788999999999999999999999999 589999999 999999999999       57889999999987

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.34  E-value=4.3e-13  Score=100.60  Aligned_cols=76  Identities=17%  Similarity=0.218  Sum_probs=60.3

Q ss_pred             ccccChhHHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCCCCCCcc-CChhhHhhhhccccCCCccccccChhhh
Q 038715           13 KGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRAL-GDLTGVKKHFCRKHGEKKWKCDKCSKCY   91 (332)
Q Consensus        13 k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f-~~~~~L~~H~~~h~~ek~~~C~~C~~~f   91 (332)
                      ..|.....|..|++.|.             ++++|.|+.|       ++.| .....|..|+++| ++++|.|.+|++.|
T Consensus        14 ~~~~~~~~~~~~~~~~~-------------~~~~~~C~~C-------~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F   72 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIV-------------DKGSVSCPTC-------QAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQL   72 (96)
T ss_dssp             CSSCTTCHHHHHHHHHH-------------HTSCEECTTT-------CSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCC
T ss_pred             CCCCCchHHHHHHHHhc-------------CCCCcCCCCC-------CCCcccCHHHHHHHHHHH-CCCCeECCCCCCee
Confidence            45666777788877776             7788888888       8888 8888888888888 88888888888888


Q ss_pred             cCchhhHHH-HHHhCCCCe
Q 038715           92 AVQSDWKAH-TKICGTREH  109 (332)
Q Consensus        92 ~~~~~L~~H-~~~h~~k~~  109 (332)
                      .....|..| +++|.++||
T Consensus        73 ~~~~~L~~H~~~~H~~~p~   91 (96)
T 2ctd_A           73 RSLAGMKYHVMANHNSLPS   91 (96)
T ss_dssp             SSHHHHHHHHHHHTCCCSS
T ss_pred             CCHHHHHHHhHHhcCCCCC
Confidence            888888888 655765654

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=3.3e-14  Score=100.38  Aligned_cols=70  Identities=17%  Similarity=0.232  Sum_probs=56.6

Q ss_pred             hhhHhhhhccccCCCccccccChhhhcCchhhHHHHHHhCCCCeeee-cCCccccchhHhhcCCccchhhhhccCCCCcc
Q 038715           66 LTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCD-CGIIFSSQNLAASGGMAQSQAQELFSSSMPST  144 (332)
Q Consensus        66 ~~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~h~~k~~~C~-C~k~f~~~~~l~~h~~~~~~~~~~~~~~~~~~  144 (332)
                      ...|..|+++|.++++|.|++|++.|.....|..      +++|.|+ |++.|.....|.                    
T Consensus         3 ~~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~------~~~~~C~~C~~~f~~~~~l~--------------------   56 (73)
T 2ctu_A            3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR------RKTPMCEKCRKDSCQEAALN--------------------   56 (73)
T ss_dssp             CCSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC------SSSCCCHHHHHTCSCCCSSC--------------------
T ss_pred             chhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc------CCCCCCCCCChhhcCHHHHH--------------------
Confidence            3567888889998899999999998888888775      6788887 888888877776                    


Q ss_pred             CCCCcccccCCCCcccccccCCCCceecccc
Q 038715          145 DSDSNTNIRMNPSISRDNIENSLRPLSMSSV  175 (332)
Q Consensus       145 c~~c~~~f~~~~~~~h~~~h~~~k~~~C~~C  175 (332)
                                    .|+++|++++||.|++|
T Consensus        57 --------------~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           57 --------------KDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             --------------CCSSCCCCCCCSSCCCC
T ss_pred             --------------HHHHhhcCCCCCCCCCC
Confidence                          37778888888888777

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.34  E-value=8.9e-13  Score=92.51  Aligned_cols=59  Identities=19%  Similarity=0.225  Sum_probs=32.0

Q ss_pred             CCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccChhhhcCchhhHHHHHH-hCCCC
Q 038715           43 KKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTRE  108 (332)
Q Consensus        43 ~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~  108 (332)
                      ++++|.|+.|       ++.|.....|..|+++|+++++|.|++|++.|.....|..|+++ |+++|
T Consensus         6 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A            6 SGHPEKCSEC-------SYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             CCCSEECSSS-------SCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSC
T ss_pred             CCCCeECCCC-------CcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCC
Confidence            4455555555       55555555555555555555555555555555555555555555 44443

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=1.5e-13  Score=103.36  Aligned_cols=76  Identities=20%  Similarity=0.337  Sum_probs=54.8

Q ss_pred             ccChhHHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCCCCCCccC-ChhhHhhhhccccC-CCccccccChhhhc
Q 038715           15 FQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALG-DLTGVKKHFCRKHG-EKKWKCDKCSKCYA   92 (332)
Q Consensus        15 f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~-~~~~L~~H~~~h~~-ek~~~C~~C~~~f~   92 (332)
                      +.....+..|++.|.             ++++|.|+.|       ++.|. ....|..|+++|++ +++|.|++|++.|.
T Consensus         6 ~~~~~~~~~h~~~h~-------------~~~~~~C~~C-------~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~   65 (98)
T 2gqj_A            6 SGPGGPEEQWQRAIH-------------ERGEAVCPTC-------NVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFK   65 (98)
T ss_dssp             CCCCCSCSHHHHTTT-------------TTSCCCCTTT-------CCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCS
T ss_pred             CCCCCcHHHHHHHhc-------------cCCCcCCCCC-------CCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccC
Confidence            344455566666665             6777777777       77777 77777777777777 77777777777777


Q ss_pred             CchhhHHHHHH-hCCCCee
Q 038715           93 VQSDWKAHTKI-CGTREHR  110 (332)
Q Consensus        93 ~~~~L~~H~~~-h~~k~~~  110 (332)
                      ....|..|+++ |+++|+.
T Consensus        66 ~~~~L~~H~~~h~~~kp~~   84 (98)
T 2gqj_A           66 SKAGLNYHTMAEHSAKPSD   84 (98)
T ss_dssp             CHHHHHHHHHHHSCSCSSC
T ss_pred             CHHHHHHHHHHHcCCCCCC
Confidence            77777777777 5666643

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.30  E-value=6.8e-13  Score=94.96  Aligned_cols=64  Identities=6%  Similarity=0.002  Sum_probs=58.2

Q ss_pred             cccccccCCCCceecccccccccCcccccccccC-----CCCccCCCCCCCcccccccccccChhHHHHHHHHhcccc
Q 038715          158 ISRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV-----SKPYLSSVCGSNACAMAIGSSFTSSTALLQKAAEMGTMM  230 (332)
Q Consensus       158 ~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~-----~~p~~C~~C~~~~~~~~~~~~f~~~~~L~~H~~~~~~~~  230 (332)
                      ..|+++|++++||.|++|++.|.+...|..|++.     ++||+|++|+         +.|.+...|..|++.++...
T Consensus         4 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~---------~~f~~~~~L~~H~~~~H~~~   72 (77)
T 2ct1_A            4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCD---------TVIARKSDLGVHLRKQHSYS   72 (77)
T ss_dssp             CCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSS---------CEESSHHHHHHHHHHTSCCS
T ss_pred             CccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCC---------CccCCHHHHHHHHHHhCCCC
Confidence            3599999999999999999999999999999873     3899999999         99999999999999887653

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=7.7e-13  Score=99.49  Aligned_cols=78  Identities=18%  Similarity=0.184  Sum_probs=66.7

Q ss_pred             CCccCChhhHhhhhccccCCCccccccChhhhc-CchhhHHHHHH-hC-CCCeeee-cCCccccchhHhhcCCccchhhh
Q 038715           60 SRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYA-VQSDWKAHTKI-CG-TREHRCD-CGIIFSSQNLAASGGMAQSQAQE  135 (332)
Q Consensus        60 ~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f~-~~~~L~~H~~~-h~-~k~~~C~-C~k~f~~~~~l~~h~~~~~~~~~  135 (332)
                      +..+.....+..|+++|.++++|.|++|++.|. ....|..|+++ ++ +++|.|+ |++.|.....|.       .|++
T Consensus         3 s~s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~-------~H~~   75 (98)
T 2gqj_A            3 SGSSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLN-------YHTM   75 (98)
T ss_dssp             CCCCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHH-------HHHH
T ss_pred             CCCCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHH-------HHHH
Confidence            345666677889999999999999999999999 99999999999 66 8999999 999999999998       4566


Q ss_pred             hccCCCCcc
Q 038715          136 LFSSSMPST  144 (332)
Q Consensus       136 ~~~~~~~~~  144 (332)
                      +|.+++|..
T Consensus        76 ~h~~~kp~~   84 (98)
T 2gqj_A           76 AEHSAKPSD   84 (98)
T ss_dssp             HHSCSCSSC
T ss_pred             HHcCCCCCC
Confidence            666665544

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.29  E-value=7.8e-14  Score=110.20  Aligned_cols=103  Identities=12%  Similarity=0.216  Sum_probs=68.2

Q ss_pred             CCCceecccccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCCCCCCcc------CChhhHhhhhcc
Q 038715            2 ATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRAL------GDLTGVKKHFCR   75 (332)
Q Consensus         2 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f------~~~~~L~~H~~~   75 (332)
                      |+++|.|...+...  ...+..+.+.+.          ....++.+.|+.|       .+.|      .....|..|+ .
T Consensus         9 ~~k~~~~~~k~~~~--~~s~ee~~~~~~----------l~~~~~~~~c~~~-------~~~~~~~~~~~~~~~l~~h~-~   68 (129)
T 2wbt_A            9 GSKKYLSNHKGIFI--HVTLEELKRYHQ----------LTPEQKRLIRAIV-------KTLIHNPQLLDESSYLYRLL-A   68 (129)
T ss_dssp             TCCGGGGCSSCEEE--ECCHHHHHHHTT----------SCHHHHHHHHHHH-------HHHHHCGGGTTTHHHHHHHH-H
T ss_pred             cccccccccCCeee--eecHHhhhcccc----------CChhhCcccchhh-------hcccCCCcccCCHHHHHHHH-H
Confidence            56788776544322  223344433332          0013456667766       4443      4556666666 5


Q ss_pred             ccCCCccccccChhhhcCchhhHHHHHHhCCCCeeee-cCCccccchhHhh
Q 038715           76 KHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCD-CGIIFSSQNLAAS  125 (332)
Q Consensus        76 h~~ek~~~C~~C~~~f~~~~~L~~H~~~h~~k~~~C~-C~k~f~~~~~l~~  125 (332)
                      |++++||.|++|++.|.....|..|+++| ++||.|+ |++.|.....|..
T Consensus        69 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H-~~~~~C~~C~k~f~~~~~l~~  118 (129)
T 2wbt_A           69 SKAISQFVCPLCLMPFSSSVSLKQHIRYT-EHTKVCPVCKKEFTSTDSALD  118 (129)
T ss_dssp             HHHHCSEECTTTCCEESSHHHHHHHHHHT-CCCCBCTTTCCBCSSHHHHHH
T ss_pred             hCCCCCeECCCCCcccCCHhHHHHHHHHC-CCCCCCCCCCcccCCHHHHHH
Confidence            77888888888888888888888888887 8888888 8888888888873

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.29  E-value=1.7e-12  Score=98.21  Aligned_cols=66  Identities=17%  Similarity=0.176  Sum_probs=57.6

Q ss_pred             CCCcceecCCCCCCCCCCCCccCChhhHhhhhc-cc---cCCCccccccChhhhcCchhhHHH-HHH-hCCCCeeee-cC
Q 038715           42 VKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFC-RK---HGEKKWKCDKCSKCYAVQSDWKAH-TKI-CGTREHRCD-CG  114 (332)
Q Consensus        42 ~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~-~h---~~ek~~~C~~C~~~f~~~~~L~~H-~~~-h~~k~~~C~-C~  114 (332)
                      .++++|.|+.|       ++.|.....|..|++ .|   .+++||.|++|++.|.....|..| +++ .+++||.|. +.
T Consensus        14 ~gekpy~C~~C-------gk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           14 KVEGGYECKYC-------TFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCCSSEECSSC-------SCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             CCCcCcCCCCC-------CCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            37889999999       999999999999997 58   568899999999999999999999 677 589999997 44

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.29  E-value=1.6e-12  Score=97.42  Aligned_cols=66  Identities=14%  Similarity=0.211  Sum_probs=60.7

Q ss_pred             CCccCChhhHhhhhccccCCCccccccChhhh-cCchhhHHHHHHhCCCCeeee-cCCccccchhHhh
Q 038715           60 SRALGDLTGVKKHFCRKHGEKKWKCDKCSKCY-AVQSDWKAHTKICGTREHRCD-CGIIFSSQNLAAS  125 (332)
Q Consensus        60 ~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f-~~~~~L~~H~~~h~~k~~~C~-C~k~f~~~~~l~~  125 (332)
                      ...|.....|..|++.|.++++|.|++|++.| .+...|..|+++|++++|.|+ |++.|.....|..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~~C~~Cgk~F~~~~~L~~   80 (96)
T 2ctd_A           13 PPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKY   80 (96)
T ss_dssp             CCSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCSSHHHHHH
T ss_pred             CCCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHHCCCCeECCCCCCeeCCHHHHHH
Confidence            35677778899999999999999999999999 999999999999988999999 9999999999984

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.28  E-value=2.3e-12  Score=90.89  Aligned_cols=58  Identities=24%  Similarity=0.421  Sum_probs=45.8

Q ss_pred             ccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccChhhhcCchhhHHHHHHh
Q 038715           40 TQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKIC  104 (332)
Q Consensus        40 ~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~h  104 (332)
                      +|.++++|.|+.|       ++.|.....|..|+++|.++++|+|++|++.|.....|..|+++|
T Consensus         8 ~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H   65 (72)
T 1x6e_A            8 IHSGEKPYGCVEC-------GKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH   65 (72)
T ss_dssp             TTTTCCCEECSSS-------CCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             ccCCCCCccCCCC-------CCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhc
Confidence            3447778888888       888888888888888888888888888888888888888888773

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.28  E-value=2.4e-12  Score=90.23  Aligned_cols=63  Identities=19%  Similarity=0.451  Sum_probs=57.0

Q ss_pred             cccCCCccccccChhhhcCchhhHHHHHH-hCCCCeeee-cCCccccchhHhhcCCccchhhhhccCCCCcc
Q 038715           75 RKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRCD-CGIIFSSQNLAASGGMAQSQAQELFSSSMPST  144 (332)
Q Consensus        75 ~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C~-C~k~f~~~~~l~~h~~~~~~~~~~~~~~~~~~  144 (332)
                      .|.++++|.|++|++.|.....|..|+++ +++++|.|+ |++.|.....|.       .|+++|.+++|..
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~-------~H~~~h~~~~p~p   67 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLS-------KHMKKFHGDMSGP   67 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHH-------HHHHHHHSSSCCS
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHH-------HHHHHHhCCCCCC
Confidence            47789999999999999999999999999 589999999 999999999999       5788888887754

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.28  E-value=1.9e-12  Score=91.79  Aligned_cols=63  Identities=24%  Similarity=0.609  Sum_probs=57.1

Q ss_pred             ccccCCCccccccChhhhcCchhhHHHHHH-hCCCCeeee-cCCccccchhHhhcCCccchhhhhccCCCCc
Q 038715           74 CRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRCD-CGIIFSSQNLAASGGMAQSQAQELFSSSMPS  143 (332)
Q Consensus        74 ~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C~-C~k~f~~~~~l~~h~~~~~~~~~~~~~~~~~  143 (332)
                      ..+.++++|+|+.|++.|.....|..|+++ +++++|.|. |++.|.....|.       .|+++|++++||
T Consensus        10 ~~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~-------~H~~~H~~~kp~   74 (74)
T 2lce_A           10 HMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK-------THTRIHSGEKPY   74 (74)
T ss_dssp             -CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHH-------HHHHHHCCSCCC
T ss_pred             cccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHH-------HHHHhcCCCCCC
Confidence            356788999999999999999999999999 589999999 999999999998       588899999886

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.26  E-value=7.7e-13  Score=96.06  Aligned_cols=75  Identities=19%  Similarity=0.193  Sum_probs=65.5

Q ss_pred             Ceee--e-cCCccccchhHhhcCCccchhhhhccCCCCccCCCCcccccCCCCcccccccCCCCceeccc--ccccccCc
Q 038715          108 EHRC--D-CGIIFSSQNLAASGGMAQSQAQELFSSSMPSTDSDSNTNIRMNPSISRDNIENSLRPLSMSS--VGVMVSSN  182 (332)
Q Consensus       108 ~~~C--~-C~k~f~~~~~l~~h~~~~~~~~~~~~~~~~~~c~~c~~~f~~~~~~~h~~~h~~~k~~~C~~--C~k~F~~~  182 (332)
                      ||.|  + |++.|.....|.                                  .|+++|.+++||+|++  |++.|.+.
T Consensus         1 p~~C~~~~C~~~f~~~~~l~----------------------------------~H~~~h~~~~~~~C~~~~C~~~f~~~   46 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLK----------------------------------VHQFSHTQQLPYECPHEGCDKRFSLP   46 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHH----------------------------------HHHHHHHTTCCEECCSTTCCCEESSH
T ss_pred             CccCCCCCCCcccCCHHHHH----------------------------------HHHHHhCCCCCeeCCCCCCcCccCCH
Confidence            5777  7 888888877776                                  3888899999999988  99999999


Q ss_pred             ccccccccC-CCCccCCC---CCCCcccccccccccChhHHHHHHHHh
Q 038715          183 LDPILTSRV-SKPYLSSV---CGSNACAMAIGSSFTSSTALLQKAAEM  226 (332)
Q Consensus       183 ~~L~~H~~~-~~p~~C~~---C~~~~~~~~~~~~f~~~~~L~~H~~~~  226 (332)
                      ..|..|+++ .. |.|+.   |+         +.|.+...|..|++.+
T Consensus        47 ~~l~~H~~~h~~-~~C~~~~~C~---------~~f~~~~~l~~H~~~h   84 (85)
T 2j7j_A           47 SRLKRHEKVHAG-YPCKKDDSCS---------FVGKTWTLYLKHVAEC   84 (85)
T ss_dssp             HHHHHHHHHHHS-EECCSCSSCC---------CEESSHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCC-CCCCCCCCCC---------CccCCHHHHHHHHHhc
Confidence            999999998 33 99999   99         9999999999998765

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.26  E-value=2.2e-12  Score=86.49  Aligned_cols=56  Identities=25%  Similarity=0.430  Sum_probs=32.0

Q ss_pred             CCCceecccccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhcccc
Q 038715            2 ATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKH   77 (332)
Q Consensus         2 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~   77 (332)
                      |++||.|+.|++.|.....|..|+++|.             ++++|.|+.|       ++.|.....|..|++.|+
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHT-------------GEKPYKCEFC-------EYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHH-------------CCCCEECSSS-------SCEESSHHHHHHHHHHHC
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcC-------------CCCCcCCCCC-------cchhCCHHHHHHHHHHhc
Confidence            3556666666666666666666666665             5556666666       666666666666665554

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.25  E-value=6.5e-12  Score=91.71  Aligned_cols=56  Identities=13%  Similarity=0.319  Sum_probs=49.4

Q ss_pred             CCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccChhhhcCchhhHHHHHH-h
Q 038715           42 VKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-C  104 (332)
Q Consensus        42 ~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h  104 (332)
                      ...++|.|++|       ++.|.....|..|+++|++++||.|++|++.|.....|..|++. |
T Consensus        24 ~~~~~h~C~~C-------gk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H   80 (85)
T 2lv2_A           24 ASAECHLCPVC-------GESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH   80 (85)
T ss_dssp             CCCTTEECTTS-------CCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTC
T ss_pred             CCCCCEECCCC-------CCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccC
Confidence            36778999999       99999999999999999999999999999999999999999876 6

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=2.1e-12  Score=92.54  Aligned_cols=59  Identities=10%  Similarity=0.160  Sum_probs=54.4

Q ss_pred             ccCCCCceecccccccccCcccccccccC------CCCccCCCCCCCcccccccccccChhHHHHHHHHhcccc
Q 038715          163 IENSLRPLSMSSVGVMVSSNLDPILTSRV------SKPYLSSVCGSNACAMAIGSSFTSSTALLQKAAEMGTMM  230 (332)
Q Consensus       163 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~------~~p~~C~~C~~~~~~~~~~~~f~~~~~L~~H~~~~~~~~  230 (332)
                      +|++++||+|.+|++.|.+...|..|+++      ++||+|++|+         +.|.....|..|++..+...
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~---------k~f~~~~~L~~H~~~~H~~~   65 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCG---------KRFEKPDSVAAHRSKSHPAL   65 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTC---------CEESSHHHHHHHHHHTSTTT
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCC---------chhCCHHHHHHHHHHhCCCC
Confidence            47899999999999999999999999887      4899999999         99999999999998877654

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.22  E-value=7.7e-13  Score=104.40  Aligned_cols=80  Identities=16%  Similarity=0.215  Sum_probs=69.7

Q ss_pred             Cceeccccccccc------ChhHHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhcccc
Q 038715            4 NRYICEVCHKGFQ------RDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKH   77 (332)
Q Consensus         4 k~~~C~~C~k~f~------~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~   77 (332)
                      +++.|+.|++.|.      ....|..|+ .|+             ++++|.|+.|       ++.|.....|..|+++| 
T Consensus        40 ~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~-------------~~~~~~C~~C-------~k~f~~~~~l~~H~~~H-   97 (129)
T 2wbt_A           40 KRLIRAIVKTLIHNPQLLDESSYLYRLL-ASK-------------AISQFVCPLC-------LMPFSSSVSLKQHIRYT-   97 (129)
T ss_dssp             HHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHH-------------HHCSEECTTT-------CCEESSHHHHHHHHHHT-
T ss_pred             CcccchhhhcccCCCcccCCHHHHHHHH-HhC-------------CCCCeECCCC-------CcccCCHhHHHHHHHHC-
Confidence            5677888887776      556677776 465             7899999999       99999999999999999 


Q ss_pred             CCCccccccChhhhcCchhhHHHHHH-hCC
Q 038715           78 GEKKWKCDKCSKCYAVQSDWKAHTKI-CGT  106 (332)
Q Consensus        78 ~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~  106 (332)
                       ++||.|++|++.|.....|..|+++ |+.
T Consensus        98 -~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           98 -EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             -CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             -CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence             8999999999999999999999999 554

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.22  E-value=9e-12  Score=83.40  Aligned_cols=56  Identities=25%  Similarity=0.422  Sum_probs=44.0

Q ss_pred             ceecccccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCC
Q 038715            5 RYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEK   80 (332)
Q Consensus         5 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek   80 (332)
                      ||.|+.|++.|.....|..|+++|.             ++++|.|+.|       ++.|.....|..|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHT-------------DVRPYHCTYC-------NFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTS-------------SCCCEECSSS-------SCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcC-------------CCCCccCCCC-------CchhcCHHHHHHHHHHhcccC
Confidence            5778888888888888888887776             6777888887       788888888888887777664

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.22  E-value=8.1e-12  Score=88.06  Aligned_cols=63  Identities=25%  Similarity=0.475  Sum_probs=56.3

Q ss_pred             hhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCeeee-cCCccccchhHhhcCCccchhhhhccCCC
Q 038715           72 HFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRCD-CGIIFSSQNLAASGGMAQSQAQELFSSSM  141 (332)
Q Consensus        72 H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C~-C~k~f~~~~~l~~h~~~~~~~~~~~~~~~  141 (332)
                      +.++|+++++|.|++|++.|.....|..|+++ +++++|.|. |++.|.....|.       .|+++|.++.
T Consensus         5 ~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~-------~H~~~H~~~~   69 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLI-------NHQRIHTSGP   69 (72)
T ss_dssp             CCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHH-------HHHHHHHSSS
T ss_pred             CCcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHH-------HHHHhcCCCC
Confidence            46789999999999999999999999999999 689999999 999999999999       4667776553

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.22  E-value=7.9e-12  Score=91.26  Aligned_cols=62  Identities=15%  Similarity=0.265  Sum_probs=53.5

Q ss_pred             hccccCCCccccccChhhhcCchhhHHHHHH-hCCCCeeee-cCCccccchhHhhcCCccchhhhhccCC
Q 038715           73 FCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRCD-CGIIFSSQNLAASGGMAQSQAQELFSSS  140 (332)
Q Consensus        73 ~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C~-C~k~f~~~~~l~~h~~~~~~~~~~~~~~  140 (332)
                      +..+..+++|.|++|++.|.+...|..|+++ ++++||.|+ |++.|.....|..|.      .++|+++
T Consensus        20 ~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~------~~~H~~E   83 (85)
T 2lv2_A           20 LGLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI------NKCHPSE   83 (85)
T ss_dssp             CSSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHH------HTTCTTC
T ss_pred             CCCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhC------cccCcCC
Confidence            4567788899999999999999999999999 699999999 999999999999531      3556654

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=3e-12  Score=90.10  Aligned_cols=63  Identities=10%  Similarity=-0.069  Sum_probs=51.6

Q ss_pred             hhhhhccCCCCccCCCCcccccCCCCcccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          132 QAQELFSSSMPSTDSDSNTNIRMNPSISRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       132 ~~~~~~~~~~~~~c~~c~~~f~~~~~~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|.++++|.|++|++.|.....+..      +++|.|++|++.|.+...|..|+++   ++||+|++|
T Consensus         8 ~H~~~h~~~~~~~C~~C~k~f~~~~~l~~------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A            8 KRQKIHLGDRSQKCSKCGIIFIRRSTLSR------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCCCCCCCCSEEECSSSCCEEECCCCCCC------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             HHHHHhCCCCCeeCCcccchhCCHHHhCc------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            45566777777888888887765544322      7899999999999999999999998   899999998

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.18  E-value=1.5e-11  Score=87.81  Aligned_cols=61  Identities=20%  Similarity=0.307  Sum_probs=45.6

Q ss_pred             CccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhc-cccCC-CccccccChhhhcCchhhHHHHHH-h
Q 038715           37 RPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFC-RKHGE-KKWKCDKCSKCYAVQSDWKAHTKI-C  104 (332)
Q Consensus        37 ~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~-~h~~e-k~~~C~~C~~~f~~~~~L~~H~~~-h  104 (332)
                      |+++|.++++|.|+.|       ++.|.....|..|++ .|.++ ++|.|++|++.|.....|..|++. |
T Consensus         6 H~~~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H   69 (77)
T 2ct1_A            6 SGRTHSGEKPYECYIC-------HARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH   69 (77)
T ss_dssp             CCCCCSCCCSEECTTT-------CCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             cccccCCCCCeECCCc-------CchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhC
Confidence            3344447788888888       888888888888876 56654 678888888888888888888877 5

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.18  E-value=1.5e-11  Score=84.94  Aligned_cols=55  Identities=24%  Similarity=0.451  Sum_probs=36.9

Q ss_pred             CCCcceecCCCCCCCCCCCCccCChhhHhhhhcc-c-cCCCccccccChhhhcCchhhHHHHHH
Q 038715           42 VKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCR-K-HGEKKWKCDKCSKCYAVQSDWKAHTKI  103 (332)
Q Consensus        42 ~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~-h-~~ek~~~C~~C~~~f~~~~~L~~H~~~  103 (332)
                      .++++|.|+.|       ++.|.....|..|++. | .++++|.|+.|++.|.+...|..|++.
T Consensus         6 ~~~k~~~C~~C-------~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~   62 (66)
T 2drp_A            6 EGEHTYRCKVC-------SRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI   62 (66)
T ss_dssp             EETTEEECTTT-------CCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHH
T ss_pred             CCCcceECCCC-------cchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHH
Confidence            35666666666       6666666666666665 5 466667777777777776777776666

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=1.4e-11  Score=88.20  Aligned_cols=63  Identities=16%  Similarity=0.241  Sum_probs=32.4

Q ss_pred             CCCceecccccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhh-ccccCCC
Q 038715            2 ATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHF-CRKHGEK   80 (332)
Q Consensus         2 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~-~~h~~ek   80 (332)
                      +++||+|+.|++.|.....|..|++.|.+.          ..+++|.|+.|       ++.|.....|..|+ ..|.+++
T Consensus         4 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~----------~~~~~~~C~~C-------~k~f~~~~~L~~H~~~~H~~~~   66 (78)
T 2d9h_A            4 GSSGLQCEICGFTCRQKASLNWHQRKHAET----------VAALRFPCEFC-------GKRFEKPDSVAAHRSKSHPALL   66 (78)
T ss_dssp             SCCCEECSSSCCEESSHHHHHHHHHHHHHH----------TTTCCEECTTT-------CCEESSHHHHHHHHHHTSTTTS
T ss_pred             CCcCeECCCCCCeeCCHHHHHHHHHHhhcc----------CCCcccCCCCC-------CchhCCHHHHHHHHHHhCCCCC
Confidence            455555555555555555555555555300          01455555555       55555555555555 3444444


Q ss_pred             c
Q 038715           81 K   81 (332)
Q Consensus        81 ~   81 (332)
                      +
T Consensus        67 ~   67 (78)
T 2d9h_A           67 L   67 (78)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.17  E-value=8.6e-12  Score=83.48  Aligned_cols=53  Identities=19%  Similarity=0.309  Sum_probs=47.8

Q ss_pred             CcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccChhhhcCchhhHHHHHH
Q 038715           44 KGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI  103 (332)
Q Consensus        44 ~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~  103 (332)
                      +++|.|+.|       ++.|.....|..|+++|++++||.|++|++.|.....|..|+++
T Consensus         2 ~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   54 (57)
T 3uk3_C            2 SSSRECSYC-------GKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLER   54 (57)
T ss_dssp             ---CBCTTT-------CCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCccCCCC-------cchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHH
Confidence            578999999       99999999999999999999999999999999999999999988

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.15  E-value=3.1e-11  Score=81.66  Aligned_cols=56  Identities=27%  Similarity=0.561  Sum_probs=42.1

Q ss_pred             CceecccccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhh-ccccCC
Q 038715            4 NRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHF-CRKHGE   79 (332)
Q Consensus         4 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~-~~h~~e   79 (332)
                      +||.|+.|++.|.....|..|++.|.             ++++|.|+.|       ++.|.....|..|+ +.|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHT-------------NEKPYPCGLC-------NRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTT-------------SSCSEECTTT-------CCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhC-------------CCCCccCCCC-------CCccCCHHHHHHHHHHHcCCc
Confidence            46778888888887788888877776             6777778777       77777777777775 566654

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.14  E-value=1.6e-11  Score=84.88  Aligned_cols=54  Identities=22%  Similarity=0.444  Sum_probs=49.4

Q ss_pred             hccccCCCccccccChhhhcCchhhHHHHHH-h--CCCCeeee-cCCccccchhHhhc
Q 038715           73 FCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-C--GTREHRCD-CGIIFSSQNLAASG  126 (332)
Q Consensus        73 ~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h--~~k~~~C~-C~k~f~~~~~l~~h  126 (332)
                      +++|++++||.|+.|++.|.....|..|++. |  ++++|.|+ |++.|.....|..|
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H   59 (66)
T 2drp_A            2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAH   59 (66)
T ss_dssp             -CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHH
T ss_pred             ccccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHH
Confidence            4678999999999999999999999999998 7  68999999 99999999999853

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=3.1e-11  Score=89.62  Aligned_cols=60  Identities=18%  Similarity=0.237  Sum_probs=33.1

Q ss_pred             eecccccccccChhHHHHHHHh-cCCCcccccCccccCCCcc--------eecCCCCCCCCCCCCccCChhhHhhhhccc
Q 038715            6 YICEVCHKGFQRDQNLQLHRKG-HNLPWKLMQRPTTQVKKGV--------YVCPKPNCVHHHPSRALGDLTGVKKHFCRK   76 (332)
Q Consensus         6 ~~C~~C~k~f~~~~~L~~H~~~-h~~~~~l~~~~~~~~~~~~--------~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h   76 (332)
                      |+|+.|++.|.....|..|++. |.             ++++        |.|+.|       ++.|.....|..|+++|
T Consensus        26 ~~C~~C~k~f~~~~~L~~H~~~~H~-------------~~~~~~~~~c~~~~C~~C-------~k~f~~~~~L~~H~~~H   85 (95)
T 2ej4_A           26 RPKKSCDRTFSTMHELVTHVTMEHV-------------GGPEQNNHVCYWEECPRE-------GKSFKAKYKLVNHIRVH   85 (95)
T ss_dssp             SSCCCCCCCCSSHHHHHHHHHHTTT-------------CCTTCSCCCCCCTTCSST-------TCCCSSHHHHHHHHHHH
T ss_pred             CcccccccccCCHHHHHHHHHHhcc-------------CCCCCCccceeccCCCCC-------CcccCCHHHHHHHHHhc
Confidence            4455566666666666666555 43             3333        555555       55555555555555555


Q ss_pred             cCCCccccc
Q 038715           77 HGEKKWKCD   85 (332)
Q Consensus        77 ~~ek~~~C~   85 (332)
                      ++++||.|+
T Consensus        86 ~~~k~~~C~   94 (95)
T 2ej4_A           86 TGEKSGPSS   94 (95)
T ss_dssp             HTCCCCSSC
T ss_pred             CCCCCCCCC
Confidence            555555553

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.11  E-value=2.8e-11  Score=80.91  Aligned_cols=55  Identities=16%  Similarity=0.395  Sum_probs=50.3

Q ss_pred             ceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccChhhhcCchhhHHHHHH-hCCC
Q 038715           46 VYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTR  107 (332)
Q Consensus        46 ~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k  107 (332)
                      ||.|+.|       ++.|.....|..|+++|+++++|.|+.|++.|.....|..|+++ ++++
T Consensus         1 p~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEEC-------GIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTT-------CCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCC-------cCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            5889999       99999999999999999999999999999999999999999998 4544

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.07  E-value=6.4e-11  Score=80.09  Aligned_cols=54  Identities=20%  Similarity=0.468  Sum_probs=49.0

Q ss_pred             cceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccChhhhcCchhhHHHHHH-hC
Q 038715           45 GVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CG  105 (332)
Q Consensus        45 ~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~  105 (332)
                      ++|.|+.|       ++.|.....|..|+++|+++++|.|+.|++.|.+...|..|++. |.
T Consensus         1 k~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~   55 (60)
T 2adr_A            1 RSFVCEVC-------TRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS   55 (60)
T ss_dssp             CCBCCTTT-------CCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcCcCCCC-------ccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcC
Confidence            47899999       99999999999999999999999999999999999999999865 63

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=9.8e-11  Score=80.99  Aligned_cols=42  Identities=14%  Similarity=0.265  Sum_probs=20.6

Q ss_pred             CCccCChhhHhhhhccccCCCccccc-cChhhhcCchhhHHHHHH
Q 038715           60 SRALGDLTGVKKHFCRKHGEKKWKCD-KCSKCYAVQSDWKAHTKI  103 (332)
Q Consensus        60 ~~~f~~~~~L~~H~~~h~~ek~~~C~-~C~~~f~~~~~L~~H~~~  103 (332)
                      ++.|. ...|..|+++ ++++||.|+ .|++.|...+.|..|+++
T Consensus        17 ~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~   59 (66)
T 2eod_A           17 TKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKD   59 (66)
T ss_dssp             CCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHT
T ss_pred             CCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHh
Confidence            44444 4444444444 444445554 455444444445544444

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=4.4e-11  Score=76.35  Aligned_cols=42  Identities=19%  Similarity=0.196  Sum_probs=39.6

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||.|++|++.|.+...|..|+++   ++||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            388999999999999999999999999999988   899999988

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.05  E-value=3.9e-11  Score=76.56  Aligned_cols=42  Identities=21%  Similarity=0.188  Sum_probs=39.6

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||.|++|++.|.+...|..|+++   ++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            488999999999999999999999999999998   899999988

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=3.8e-11  Score=76.66  Aligned_cols=42  Identities=17%  Similarity=0.167  Sum_probs=39.3

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||+|++|++.|.+...|.+|+++   ++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            388899999999999999999999999999988   899999988

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.04  E-value=3.5e-11  Score=76.81  Aligned_cols=42  Identities=17%  Similarity=0.048  Sum_probs=39.2

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||+|++|++.|.+...|..|+++   ++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            388999999999999999999999999999988   899999988

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=4e-11  Score=76.55  Aligned_cols=42  Identities=19%  Similarity=0.160  Sum_probs=39.6

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||+|++|++.|.+...|.+|+++   ++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            388999999999999999999999999999998   899999988

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=3.9e-11  Score=76.62  Aligned_cols=41  Identities=10%  Similarity=0.102  Sum_probs=39.1

Q ss_pred             cccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          160 RDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       160 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      |+++|++++||+|++|++.|.+...|.+|+++   ++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            88999999999999999999999999999998   899999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=3.8e-11  Score=76.64  Aligned_cols=42  Identities=21%  Similarity=0.211  Sum_probs=39.8

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||+|++|++.|.+...|..|+++   ++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            388999999999999999999999999999998   899999988

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.04  E-value=1.5e-10  Score=81.51  Aligned_cols=56  Identities=20%  Similarity=0.476  Sum_probs=44.1

Q ss_pred             CCCcceecC--CCCCCCCCCCCccCChhhHhhhhccccCCCccccccChhhhcCchhhHHHHHHh
Q 038715           42 VKKGVYVCP--KPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKIC  104 (332)
Q Consensus        42 ~~~~~~~C~--~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~h  104 (332)
                      .++++|.|+  .|       ++.|.....|..|+++|.++++|.|++|++.|.....|..|+++|
T Consensus        15 ~~~~~~~C~~~~C-------~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           15 PKMRPYACPVESC-------DRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             CCCCCEECSSTTB-------CCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             CCCCccCCcCCCC-------CCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            367778886  47       888888888888888888888888888888888888888887653

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=4.4e-11  Score=76.37  Aligned_cols=42  Identities=17%  Similarity=0.063  Sum_probs=39.7

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||.|++|++.|.+...|.+|+++   ++||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            488999999999999999999999999999988   899999988

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=4.3e-11  Score=76.38  Aligned_cols=42  Identities=17%  Similarity=0.130  Sum_probs=39.4

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||.|++|++.|.+...|..|+++   ++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            388899999999999999999999999999988   899999988

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=4e-11  Score=76.57  Aligned_cols=42  Identities=21%  Similarity=0.196  Sum_probs=39.5

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||+|++|++.|.+...|..|+++   ++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            388999999999999999999999999999998   899999988

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=4.6e-11  Score=76.23  Aligned_cols=42  Identities=21%  Similarity=0.200  Sum_probs=39.4

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||+|++|++.|.+...|..|+++   ++||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            388999999999999999999999999999988   899999988

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.03  E-value=4.2e-11  Score=76.46  Aligned_cols=42  Identities=17%  Similarity=0.130  Sum_probs=39.5

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||.|++|++.|.+...|..|+++   ++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            388999999999999999999999999999988   899999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=4.8e-11  Score=76.20  Aligned_cols=41  Identities=17%  Similarity=0.120  Sum_probs=39.0

Q ss_pred             cccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          160 RDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       160 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      |+++|++++||+|++|++.|.+...|..|+++   ++||+|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            88899999999999999999999999999998   899999988

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.03  E-value=5.1e-11  Score=76.01  Aligned_cols=42  Identities=19%  Similarity=0.116  Sum_probs=39.5

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||.|++|++.|.+...|..|+++   ++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            388999999999999999999999999999988   899999988

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.03  E-value=4e-11  Score=76.58  Aligned_cols=41  Identities=15%  Similarity=0.111  Sum_probs=38.7

Q ss_pred             cccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          160 RDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       160 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      |+++|++++||+|++|++.|.+...|.+|+++   ++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            88899999999999999999999999999988   899999988

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=5.2e-11  Score=76.00  Aligned_cols=41  Identities=17%  Similarity=0.084  Sum_probs=39.2

Q ss_pred             cccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          160 RDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       160 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      |+++|++++||+|++|++.|.+...|..|+++   ++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            88899999999999999999999999999998   899999988

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=4.8e-11  Score=76.15  Aligned_cols=41  Identities=17%  Similarity=0.188  Sum_probs=39.0

Q ss_pred             cccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          160 RDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       160 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      |+++|++++||+|++|++.|.+...|.+|+++   ++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            88899999999999999999999999999998   899999988

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=4.1e-11  Score=76.45  Aligned_cols=42  Identities=19%  Similarity=0.194  Sum_probs=39.4

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||+|++|++.|.+...|.+|+++   ++||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            388899999999999999999999999999988   899999988

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=5.5e-11  Score=75.84  Aligned_cols=42  Identities=14%  Similarity=-0.022  Sum_probs=39.5

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||+|++|++.|.+...|..|+++   ++||+|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            388999999999999999999999999999988   899999988

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=5.6e-11  Score=75.86  Aligned_cols=42  Identities=21%  Similarity=0.193  Sum_probs=39.5

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||.|++|++.|.+...|.+|+++   ++||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            488999999999999999999999999999988   899999988

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=5.3e-11  Score=76.02  Aligned_cols=41  Identities=24%  Similarity=0.198  Sum_probs=38.9

Q ss_pred             cccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          160 RDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       160 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      |+++|++++||.|++|++.|.+...|.+|+++   ++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            88899999999999999999999999999988   899999988

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=4.4e-11  Score=76.30  Aligned_cols=42  Identities=19%  Similarity=0.172  Sum_probs=39.1

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||.|++|++.|.+...|..|+++   ++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            388899999999999999999999999999988   899999988

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=3.8e-11  Score=76.60  Aligned_cols=42  Identities=21%  Similarity=0.188  Sum_probs=39.6

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||.|++|++.|.++..|.+|+++   ++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            388999999999999999999999999999988   899999988

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=3.9e-11  Score=76.62  Aligned_cols=42  Identities=21%  Similarity=0.178  Sum_probs=39.6

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||+|++|++.|.+...|..|+++   ++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            488999999999999999999999999999988   899999988

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=3.9e-11  Score=76.63  Aligned_cols=42  Identities=17%  Similarity=0.071  Sum_probs=39.8

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||.|++|++.|.+.+.|..|+++   ++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            488999999999999999999999999999988   899999988

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=5.7e-11  Score=75.78  Aligned_cols=42  Identities=17%  Similarity=0.173  Sum_probs=39.5

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||.|++|++.|.+...|..|+++   ++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            488999999999999999999999999999988   899999988

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=4e-11  Score=75.77  Aligned_cols=41  Identities=17%  Similarity=0.115  Sum_probs=38.4

Q ss_pred             cccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          160 RDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       160 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      |+++|++++||+|++|++.|.+..+|..|+++   ++||+|++|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            57889999999999999999999999999988   899999988

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=4.1e-11  Score=76.52  Aligned_cols=42  Identities=19%  Similarity=0.199  Sum_probs=39.7

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||.|++|++.|.+...|..|+++   ++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            388999999999999999999999999999988   899999987

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=3.7e-11  Score=76.64  Aligned_cols=42  Identities=17%  Similarity=0.067  Sum_probs=39.1

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||+|++|++.|.+..+|.+|+++   ++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            388999999999999999999999999999887   899999988

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=4.3e-11  Score=76.42  Aligned_cols=42  Identities=17%  Similarity=0.128  Sum_probs=39.7

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||.|++|++.|.+...|.+|+++   ++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            388999999999999999999999999999988   899999988

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=5.4e-11  Score=75.87  Aligned_cols=42  Identities=17%  Similarity=0.112  Sum_probs=39.3

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||.|++|++.|.+...|..|+++   ++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            388999999999999999999999999999988   899999988

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=5.4e-11  Score=75.93  Aligned_cols=42  Identities=17%  Similarity=0.156  Sum_probs=39.4

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||.|++|++.|.+...|..|+++   ++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            388999999999999999999999999999988   899999987

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=5.5e-11  Score=75.87  Aligned_cols=42  Identities=17%  Similarity=0.186  Sum_probs=39.5

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||+|++|++.|.+...|.+|+++   ++||+|++|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            388999999999999999999999999999998   899999988

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.01  E-value=4.1e-11  Score=76.53  Aligned_cols=42  Identities=24%  Similarity=0.217  Sum_probs=39.3

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||.|++|++.|.+...|.+|+++   ++||+|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            388899999999999999999999999999988   899999987

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.00  E-value=7e-11  Score=75.42  Aligned_cols=41  Identities=20%  Similarity=0.211  Sum_probs=38.9

Q ss_pred             cccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          160 RDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       160 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      |+++|++++||+|++|++.|.+...|..|+++   ++||+|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            78899999999999999999999999999988   899999988

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=4.8e-11  Score=76.16  Aligned_cols=42  Identities=19%  Similarity=0.180  Sum_probs=39.5

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||.|++|++.|.+...|..|+++   ++||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            388999999999999999999999999999988   899999988

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=7.4e-11  Score=75.56  Aligned_cols=41  Identities=20%  Similarity=0.120  Sum_probs=38.9

Q ss_pred             cccccCCCCceecccccccccCccccccccc-C---CCCccCCCC
Q 038715          160 RDNIENSLRPLSMSSVGVMVSSNLDPILTSR-V---SKPYLSSVC  200 (332)
Q Consensus       160 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~-~---~~p~~C~~C  200 (332)
                      |+++|++++||.|++|++.|.+...|..|++ +   ++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            8899999999999999999999999999999 6   899999988

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=4.9e-11  Score=76.10  Aligned_cols=42  Identities=17%  Similarity=0.172  Sum_probs=39.3

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||.|++|++.|.+...|..|+++   ++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            488999999999999999999999999999988   899999987

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=7.8e-11  Score=75.16  Aligned_cols=42  Identities=14%  Similarity=0.185  Sum_probs=39.2

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||.|++|++.|.+...|.+|+++   ++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            388999999999999999999999999999988   899999876

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=4.7e-11  Score=76.16  Aligned_cols=42  Identities=12%  Similarity=0.056  Sum_probs=39.2

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||+|++|++.|.+...|.+|+++   ++||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            488999999999999999999999999999988   899999988

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=5.3e-11  Score=75.96  Aligned_cols=42  Identities=17%  Similarity=0.130  Sum_probs=39.4

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||+|++|++.|.+...|..|+++   ++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            388999999999999999999999999999988   899999988

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=5e-11  Score=76.07  Aligned_cols=42  Identities=19%  Similarity=0.122  Sum_probs=39.6

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||+|++|++.|.+...|..|+++   ++||+|++|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            388999999999999999999999999999988   899999988

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=5.2e-11  Score=76.02  Aligned_cols=42  Identities=19%  Similarity=0.092  Sum_probs=39.0

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .|+++|++++||+|++|++.|.+...|..|+++   ++||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            388899999999999999999999999999888   899999988

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.98  E-value=1.3e-10  Score=81.87  Aligned_cols=59  Identities=15%  Similarity=0.372  Sum_probs=50.3

Q ss_pred             Hhhh-hccccCCCccccc--cChhhhcCchhhHHHHHH-hCCCCeeee-cCCccccchhHhhcC
Q 038715           69 VKKH-FCRKHGEKKWKCD--KCSKCYAVQSDWKAHTKI-CGTREHRCD-CGIIFSSQNLAASGG  127 (332)
Q Consensus        69 L~~H-~~~h~~ek~~~C~--~C~~~f~~~~~L~~H~~~-h~~k~~~C~-C~k~f~~~~~l~~h~  127 (332)
                      |..| ..+|.++++|.|+  .|++.|.....|..|+++ +++++|.|+ |++.|.....|..|.
T Consensus         6 ~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   69 (73)
T 1f2i_G            6 MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI   69 (73)
T ss_dssp             --CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHH
T ss_pred             ccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHH
Confidence            3444 4567889999997  699999999999999999 699999999 999999999998543

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=7e-11  Score=75.38  Aligned_cols=41  Identities=17%  Similarity=0.118  Sum_probs=38.8

Q ss_pred             cccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          160 RDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       160 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      |+++|++++||+|++|++.|.+...|..|+++   ++||+|++|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            78899999999999999999999999999888   899999988

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=7.9e-11  Score=75.13  Aligned_cols=41  Identities=10%  Similarity=-0.025  Sum_probs=38.9

Q ss_pred             cccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          160 RDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       160 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      |+++|++++||.|++|++.|.+...|..|+++   ++||+|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            88899999999999999999999999999988   899999988

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=8.1e-11  Score=75.13  Aligned_cols=41  Identities=20%  Similarity=0.107  Sum_probs=39.2

Q ss_pred             cccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          160 RDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       160 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      |+++|++++||+|++|++.|.+...|..|+++   ++||+|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            78899999999999999999999999999998   899999988

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.96  E-value=3.9e-10  Score=83.58  Aligned_cols=62  Identities=11%  Similarity=0.200  Sum_probs=52.2

Q ss_pred             CcceecCCCCCCCCCCCCccCChhhHhhhhcc-ccCCCc--------cccccChhhhcCchhhHHHHHH-hCCCCeeee
Q 038715           44 KGVYVCPKPNCVHHHPSRALGDLTGVKKHFCR-KHGEKK--------WKCDKCSKCYAVQSDWKAHTKI-CGTREHRCD  112 (332)
Q Consensus        44 ~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~-h~~ek~--------~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C~  112 (332)
                      ...|.|+.|       ++.|.....|..|++. |.++++        |.|++|++.|.....|..|+++ ++++||.|+
T Consensus        23 ~~~~~C~~C-------~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           23 QLSRPKKSC-------DRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             CSSSSCCCC-------CCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             cCCCccccc-------ccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            344678888       8999999999999887 888877        8899999999999999999888 588888873

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=1.4e-10  Score=73.99  Aligned_cols=41  Identities=17%  Similarity=0.199  Sum_probs=38.6

Q ss_pred             cccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          160 RDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       160 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      |+++|++++||.|++|++.|.+...|..|+++   ++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            88899999999999999999999999999988   899999876

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.91  E-value=1.1e-09  Score=76.77  Aligned_cols=54  Identities=19%  Similarity=0.402  Sum_probs=33.0

Q ss_pred             CCcceecCC--CCCCCCCCCCccCChhhHhhhhccccCCCcccccc--ChhhhcCchhhHHHHHH
Q 038715           43 KKGVYVCPK--PNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDK--CSKCYAVQSDWKAHTKI  103 (332)
Q Consensus        43 ~~~~~~C~~--C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~--C~~~f~~~~~L~~H~~~  103 (332)
                      ..++|.|+.  |       ++.|.....|..|+++|+++++|.|.+  |++.|.....|..|+++
T Consensus        14 ~~~~~~C~~~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~   71 (72)
T 2epa_A           14 RIRSHICSHPGC-------GKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT   71 (72)
T ss_dssp             CCCCEECSSTTT-------CCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTT
T ss_pred             ccCceeCCCCCC-------ccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhc
Confidence            445566655  5       666666666666666666666666643  66666666666666543

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=3e-10  Score=72.38  Aligned_cols=41  Identities=12%  Similarity=0.071  Sum_probs=38.2

Q ss_pred             cccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          160 RDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       160 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      ++++|++++||.|++|++.|.+...|..|+++   ++||+|++|
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            56789999999999999999999999999988   899999988

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=5.6e-10  Score=71.15  Aligned_cols=41  Identities=27%  Similarity=0.501  Sum_probs=20.8

Q ss_pred             hhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCeeee
Q 038715           72 HFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRCD  112 (332)
Q Consensus        72 H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C~  112 (332)
                      |+++|++++||.|++|++.|.....|..|+++ ++++||.|+
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS   44 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            44445555555555555555555555555554 344555544

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=3.5e-10  Score=72.09  Aligned_cols=41  Identities=22%  Similarity=0.215  Sum_probs=38.0

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSV  199 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~  199 (332)
                      .|+++|++++||+|++|++.|.+...|..|+++   ++||+|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            388999999999999999999999999999998   89999974

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=6e-10  Score=76.93  Aligned_cols=59  Identities=15%  Similarity=0.304  Sum_probs=51.1

Q ss_pred             ccCCCccccccChhhhcCchhhHHHHHHhCCCCeeee--cCCccccchhHhhcCCccchhhhhccCCCC
Q 038715           76 KHGEKKWKCDKCSKCYAVQSDWKAHTKICGTREHRCD--CGIIFSSQNLAASGGMAQSQAQELFSSSMP  142 (332)
Q Consensus        76 h~~ek~~~C~~C~~~f~~~~~L~~H~~~h~~k~~~C~--C~k~f~~~~~l~~h~~~~~~~~~~~~~~~~  142 (332)
                      .-+++||.|+.|++.|. ...|..|+++++++||.|+  |++.|..+..|.       .|+++|....+
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~~~~~p~~C~~~C~k~f~~~~~L~-------~H~~~hc~~~~   65 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQCPRLPVACPNQCGVGTVAREDLP-------GHLKDSCNTAL   65 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHHCSSSEEECTTCCSCCEEETTTHH-------HHHHTTSSSCC
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHHcCCcCccCCcccCcccccHHHHH-------HHHHhhcccCc
Confidence            34678999999999999 9999999988889999996  999999999998       56777766554

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=3.5e-10  Score=72.07  Aligned_cols=41  Identities=17%  Similarity=0.213  Sum_probs=37.7

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSV  199 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~  199 (332)
                      .|+++|++++||+|++|++.|.+...|.+|+++   ++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            388999999999999999999999999999988   89999974

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=3.9e-10  Score=71.78  Aligned_cols=41  Identities=17%  Similarity=0.121  Sum_probs=38.0

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSV  199 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~  199 (332)
                      .|+++|++++||.|++|++.|.+...|..|+++   ++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            388999999999999999999999999999988   89999974

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=3.3e-10  Score=72.14  Aligned_cols=41  Identities=22%  Similarity=0.182  Sum_probs=37.6

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSV  199 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~  199 (332)
                      .|+++|++++||.|++|++.|.+...|..|+++   ++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            388899999999999999999999999999988   89999974

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=4.3e-10  Score=71.65  Aligned_cols=41  Identities=22%  Similarity=0.211  Sum_probs=37.7

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSV  199 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~  199 (332)
                      .|+++|++++||.|++|++.|.+...|..|+++   ++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            488899999999999999999999999999988   89999974

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=2.8e-10  Score=72.55  Aligned_cols=41  Identities=17%  Similarity=0.078  Sum_probs=38.1

Q ss_pred             cccccCCCCceecccccccccCcccccccccC---CCCccCCCC
Q 038715          160 RDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       160 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      .+++|++++||.|++|++.|.+...|..|+++   ++||+|++|
T Consensus         3 ~~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             CSSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            46789999999999999999999999999998   899999988

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=1.7e-09  Score=68.76  Aligned_cols=43  Identities=16%  Similarity=0.182  Sum_probs=33.7

Q ss_pred             ccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           38 PTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        38 ~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      +++|.++++|.|+.|       ++.|.....|..|+++|++++||.|++|
T Consensus         4 ~~~H~~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            4 GSSGTGKKPYKCNEC-------GKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCSSCBCTTT-------CCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CcCCCCCcCeECCCC-------CCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            334447888888888       8888888888888888888888888776

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.87  E-value=3.6e-10  Score=70.41  Aligned_cols=39  Identities=15%  Similarity=0.064  Sum_probs=35.8

Q ss_pred             cccccCCCCceecccccccccCcccccccccC---CCCccCC
Q 038715          160 RDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSS  198 (332)
Q Consensus       160 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~  198 (332)
                      |+++|++++||+|++|++.|.+...|..|+++   ++||+|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            57789999999999999999999999999988   8999985

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.87  E-value=3e-10  Score=72.39  Aligned_cols=41  Identities=20%  Similarity=0.203  Sum_probs=38.0

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSV  199 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~  199 (332)
                      .|+++|++++||.|++|++.|.+...|.+|+++   ++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            388999999999999999999999999999988   89999974

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=4.8e-10  Score=71.34  Aligned_cols=41  Identities=17%  Similarity=0.207  Sum_probs=37.9

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSV  199 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~  199 (332)
                      .|+++|++++||.|++|++.|.+...|..|+++   ++||+|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            388999999999999999999999999999988   89999974

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=4.9e-10  Score=71.42  Aligned_cols=40  Identities=13%  Similarity=0.127  Sum_probs=37.2

Q ss_pred             cccccCCCCceecccccccccCcccccccccC---CCCccCCC
Q 038715          160 RDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSV  199 (332)
Q Consensus       160 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~  199 (332)
                      |+++|++++||+|++|++.|.+...|.+|+++   ++||+|+.
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            78899999999999999999999999999988   89999974

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.86  E-value=2e-09  Score=68.42  Aligned_cols=43  Identities=12%  Similarity=0.156  Sum_probs=34.2

Q ss_pred             ccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           38 PTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        38 ~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      +++|.++++|.|+.|       ++.|.....|..|+++|++++||+|++|
T Consensus         4 ~~~H~~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            4 GSSGMGEKTWKCREC-------DMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCCCCSSS-------CCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             cCccCCCcCeECCCC-------CcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            334447888888888       8888888888888888888888888776

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=4.7e-10  Score=71.45  Aligned_cols=41  Identities=20%  Similarity=0.148  Sum_probs=37.9

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSV  199 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~  199 (332)
                      .|+++|++++||.|++|++.|.+...|.+|+++   ++||+|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            388999999999999999999999999999988   89999974

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=4.3e-10  Score=71.57  Aligned_cols=41  Identities=20%  Similarity=0.220  Sum_probs=37.9

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSV  199 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~  199 (332)
                      .|+++|++++||.|++|++.|.+...|..|+++   ++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            388999999999999999999999999999988   89999974

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=4.7e-10  Score=71.41  Aligned_cols=41  Identities=17%  Similarity=0.276  Sum_probs=37.6

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSV  199 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~  199 (332)
                      .|+++|++++||.|++|++.|.+...|..|+++   ++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            388899999999999999999999999999988   89999974

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=4.1e-10  Score=71.69  Aligned_cols=41  Identities=17%  Similarity=0.182  Sum_probs=37.5

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSV  199 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~  199 (332)
                      .|+++|++++||.|++|++.|.+...|..|+++   ++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            388899999999999999999999999999988   89999974

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=5e-10  Score=71.35  Aligned_cols=41  Identities=20%  Similarity=0.063  Sum_probs=37.5

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSV  199 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~  199 (332)
                      .|+++|++++||+|++|++.|.+...|..|+++   ++||+|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            388899999999999999999999999999988   89999974

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.85  E-value=1.7e-09  Score=68.66  Aligned_cols=43  Identities=12%  Similarity=0.067  Sum_probs=34.1

Q ss_pred             ccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           38 PTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        38 ~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      ++.|.++++|.|+.|       ++.|.....|..|+++|++++||+|++|
T Consensus         4 ~~~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            4 GSSGTGVKPYGCSQC-------AKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCSEECSSS-------SCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccCCCCCCceECCCC-------CchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            334447888888888       8888888888888888888888888776

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.8e-09  Score=68.67  Aligned_cols=43  Identities=14%  Similarity=0.121  Sum_probs=33.6

Q ss_pred             ccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           38 PTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        38 ~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      ++.|.++++|.|+.|       ++.|.....|..|+++|++++||+|++|
T Consensus         4 ~~~H~~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            4 GSSGTGGKHFECTEC-------GKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSSSSCCEECSSS-------CCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccccCCCCCeECCCC-------CchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            344447788888888       8888888888888888888888888776

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=4e-10  Score=71.73  Aligned_cols=41  Identities=17%  Similarity=0.174  Sum_probs=37.6

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSV  199 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~  199 (332)
                      .|+++|++++||.|++|++.|.+...|..|+++   ++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            388899999999999999999999999999988   89999974

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.85  E-value=2.3e-09  Score=70.85  Aligned_cols=45  Identities=29%  Similarity=0.461  Sum_probs=41.4

Q ss_pred             CCCCceecccccccccChhHHHHHHH-hcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCC
Q 038715            1 MATNRYICEVCHKGFQRDQNLQLHRK-GHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGD   65 (332)
Q Consensus         1 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~   65 (332)
                      ++++||.|+.|++.|.....|..|++ +|.             ++++|.|++|       ++.|.+
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~-------------~~k~~~C~~C-------~k~F~~   53 (54)
T 2eps_A            8 SVGKPYICQSCGKGFSRPDHLNGHIKQVHT-------------SERPHKCQVW-------VSGPSS   53 (54)
T ss_dssp             CSSCCEECSSSCCEESSHHHHHHHHHHTSC-------------CCCCCCSSSS-------CCSSCC
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHHHhcC-------------CCCCccCCCC-------CCCCCC
Confidence            36899999999999999999999997 898             8899999999       999875

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=3.6e-10  Score=72.01  Aligned_cols=41  Identities=22%  Similarity=0.201  Sum_probs=37.9

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSV  199 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~  199 (332)
                      .|+++|++++||+|++|++.|.+...|..|+++   ++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            388999999999999999999999999999988   89999974

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.8e-09  Score=68.61  Aligned_cols=42  Identities=14%  Similarity=0.158  Sum_probs=31.7

Q ss_pred             cccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           39 TTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        39 ~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      +.|.++++|.|+.|       ++.|.....|..|+++|++++||.|++|
T Consensus         5 ~~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            5 SSGTGEKPYECSVC-------GKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCSEECSSS-------CCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CCcCCCCCeeCCCc-------CCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            34447777888877       7788888888888888887778877766

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=6.2e-10  Score=69.28  Aligned_cols=38  Identities=21%  Similarity=0.223  Sum_probs=35.6

Q ss_pred             cccccCCCCceecccccccccCcccccccccC---CCCccC
Q 038715          160 RDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLS  197 (332)
Q Consensus       160 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C  197 (332)
                      |+++|++++||.|++|++.|.+...|..|+++   ++||+|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            78899999999999999999999999999988   889987

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.9e-09  Score=68.49  Aligned_cols=44  Identities=11%  Similarity=0.135  Sum_probs=36.4

Q ss_pred             CccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           37 RPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        37 ~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      |+..|.++++|.|+.|       ++.|.....|..|+++|++++||+|++|
T Consensus         3 H~~~H~~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            3 SGSSGTGEKPFKCGEC-------GKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECTTT-------CCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCeECCCC-------CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3344458888999998       8899999999999999998889988877

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=4.9e-10  Score=71.34  Aligned_cols=41  Identities=15%  Similarity=0.154  Sum_probs=37.6

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSV  199 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~  199 (332)
                      .|+++|++++||.|++|++.|.+...|..|+++   ++||+|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            388999999999999999999999999999988   89999974

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.7e-09  Score=68.80  Aligned_cols=42  Identities=14%  Similarity=0.155  Sum_probs=30.7

Q ss_pred             cccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           39 TTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        39 ~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      ++|.++++|.|+.|       ++.|.....|..|+++|++++||.|++|
T Consensus         5 ~~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            5 SSGTGEKPYECSIC-------GKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCCCSEECSSS-------CCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCcCcCCCCC-------CcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            33447777777777       7777777777777777777777777765

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.6e-09  Score=68.83  Aligned_cols=43  Identities=14%  Similarity=0.150  Sum_probs=32.3

Q ss_pred             ccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           38 PTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        38 ~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      +++|.++++|.|+.|       ++.|.....|..|+++|++++||.|++|
T Consensus         4 ~~~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            4 GSSGTGEKPYKCNEC-------GKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSSEECSSS-------CCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             ccCCCCCCCeECCCC-------CchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            334447777888887       7888888888888888888888888776

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=3.8e-10  Score=71.81  Aligned_cols=41  Identities=15%  Similarity=0.151  Sum_probs=37.9

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSV  199 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~  199 (332)
                      .|+++|++++||.|++|++.|.+...|..|+++   ++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            388999999999999999999999999999988   89999974

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=2.3e-09  Score=68.18  Aligned_cols=43  Identities=14%  Similarity=0.119  Sum_probs=33.4

Q ss_pred             ccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           38 PTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        38 ~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      ++.|.++++|.|+.|       ++.|.....|..|+++|++++||.|++|
T Consensus         4 ~~~h~~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            4 GSSGSVEKPYKCEDC-------GKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CSCCCCCSSCBCSSS-------CCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCeeCccc-------CchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            344447788888888       8888888888888888888888888776

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.84  E-value=1.3e-09  Score=72.11  Aligned_cols=46  Identities=13%  Similarity=0.218  Sum_probs=35.8

Q ss_pred             cCCCcceecCCCCCCCCCCCCccCChhhHhhhhc-cccCCCccccccChhhhcC
Q 038715           41 QVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFC-RKHGEKKWKCDKCSKCYAV   93 (332)
Q Consensus        41 ~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~-~h~~ek~~~C~~C~~~f~~   93 (332)
                      +.++++|.|+.|       ++.|.....|..|++ +|.+++||.|++|++.|.+
T Consensus         7 ~~~~k~~~C~~C-------~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQSC-------GKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSSS-------CCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCeECCCC-------CcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            446778888888       888888888888876 7888888888888887765

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.84  E-value=1.8e-09  Score=68.63  Aligned_cols=42  Identities=14%  Similarity=0.180  Sum_probs=31.1

Q ss_pred             cccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           39 TTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        39 ~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      +.|.++++|.|+.|       ++.|.....|..|+++|++++||.|++|
T Consensus         5 ~~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            5 SSGTGEKRYKCNEC-------GKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCTTSCCEECSSS-------CCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             cCCCCCcCcCCCCC-------cchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            33447777777777       7777777777777777777777777766

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.9e-09  Score=68.46  Aligned_cols=41  Identities=17%  Similarity=0.197  Sum_probs=27.4

Q ss_pred             ccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           40 TQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        40 ~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      +|.++++|.|+.|       ++.|.....|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            6 SGTGEKLYNCKEC-------GKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCBTTT-------TBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             cCCCCCCeECCCC-------CCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            3336666777766       6677777777777766766667766665

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.8e-09  Score=68.62  Aligned_cols=42  Identities=14%  Similarity=0.181  Sum_probs=32.7

Q ss_pred             cccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           39 TTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        39 ~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      ++|.++++|.|+.|       ++.|.....|..|+++|++++||.|++|
T Consensus         5 ~~H~~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            5 SSGTGEKPYKCHEC-------GKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCTTCCCCEECTTT-------CCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             cCCCCCCCeECCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34447788888888       8888888888888888888888888776

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.84  E-value=1.8e-09  Score=68.70  Aligned_cols=40  Identities=20%  Similarity=0.204  Sum_probs=26.6

Q ss_pred             cCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           41 QVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        41 ~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      |.++++|.|+.|       ++.|.....|..|+++|++++||+|++|
T Consensus         7 H~~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            7 GTGEKPYECKEC-------GKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSCBCSSS-------CCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             cCCCCceECCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            336666666666       6666666666666666666666666655

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=1.8e-09  Score=68.65  Aligned_cols=42  Identities=14%  Similarity=0.093  Sum_probs=32.3

Q ss_pred             cccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           39 TTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        39 ~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      ..|.++++|.|+.|       ++.|.....|..|+++|++++||.|++|
T Consensus         5 ~~H~~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            5 SSGSSTKSHQCHEC-------GRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCSEECSSS-------CCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCCCCCCCeECCcC-------CCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34447778888888       8888888888888888888888888776

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=2.2e-09  Score=68.19  Aligned_cols=42  Identities=21%  Similarity=0.229  Sum_probs=31.5

Q ss_pred             cccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           39 TTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        39 ~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      .+|.++++|.|++|       ++.|.....|..|+++|++++||.|++|
T Consensus         5 ~~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            5 SSGSGEKPYVCDYC-------GKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CTTCCCCSEECSSS-------CCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCeECCCC-------ChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            33447777888877       7788888888888878877777877766

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.84  E-value=2.2e-09  Score=68.16  Aligned_cols=43  Identities=16%  Similarity=0.133  Sum_probs=34.6

Q ss_pred             ccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           38 PTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        38 ~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      +++|.++++|.|+.|       ++.|.....|..|+++|++++||+|++|
T Consensus         4 ~~~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            4 GSSGTGEKPYNCKEC-------GKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSEECSSS-------CCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCcCeECCcc-------ccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            344447888888888       8888888888888888888888888876

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.8e-09  Score=68.63  Aligned_cols=41  Identities=15%  Similarity=0.136  Sum_probs=28.3

Q ss_pred             ccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           40 TQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        40 ~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      +|.++++|.|+.|       ++.|.....|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            6 SGTGEKPYICAEC-------GKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             TTSSCCSEECSSS-------CCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CCCCCcCeECCCC-------ChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3336677777777       7777777777777777777777777665

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=2.3e-09  Score=68.17  Aligned_cols=43  Identities=19%  Similarity=0.229  Sum_probs=32.7

Q ss_pred             ccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           38 PTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        38 ~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      +++|.++++|.|+.|       ++.|.....|..|+++|++++||+|++|
T Consensus         4 ~~~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            4 GSSGTGEKPFDCIDC-------GKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCSBCCTTT-------CCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCcCCCCCeECCCC-------CceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            334447778888888       8888888888888888888888888776

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=2e-09  Score=68.48  Aligned_cols=40  Identities=10%  Similarity=0.098  Sum_probs=26.6

Q ss_pred             cCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           41 QVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        41 ~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      |.++++|.|+.|       ++.|.....|..|+++|++++||.|++|
T Consensus         7 H~~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            7 GTGEKPFKCDIC-------GKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             SSSSCSCCCSSS-------CCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCcCCCcC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            336666666666       6666666666666666666666666655

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=2.3e-09  Score=68.08  Aligned_cols=42  Identities=10%  Similarity=0.018  Sum_probs=32.0

Q ss_pred             cccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           39 TTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        39 ~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      +.|.++++|.|+.|       ++.|.....|..|+++|++++||.|++|
T Consensus         5 ~~H~~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            5 SSGTGEKPHECREC-------GKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CSCCCCCSCBCTTT-------CCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             cccCCCCCeeCCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            33447778888887       7888888888888888888888888776

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=5.3e-10  Score=70.42  Aligned_cols=40  Identities=13%  Similarity=0.083  Sum_probs=37.1

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSS  198 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~  198 (332)
                      .|+++|++++||+|++|++.|.+...|..|+++   ++||+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            388999999999999999999999999999988   8999985

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=2e-09  Score=68.42  Aligned_cols=41  Identities=12%  Similarity=0.118  Sum_probs=30.3

Q ss_pred             ccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           40 TQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        40 ~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      +|.++++|.|+.|       ++.|.....|..|+++|++++||.|++|
T Consensus         6 ~H~~~~~~~C~~C-------~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            6 SGTGEKPYKCNEC-------GKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSEETTT-------TEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCeECCCc-------ChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3347777777777       7777777777777777777777777766

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=2.4e-09  Score=68.12  Aligned_cols=43  Identities=16%  Similarity=0.181  Sum_probs=32.9

Q ss_pred             ccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           38 PTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        38 ~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      .++|.++++|.|+.|       ++.|.....|..|+++|++++||.|++|
T Consensus         4 ~~~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            4 GSSGAGEKPYGCSEC-------GKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             SSCSSCCCSCBCSSS-------CCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CcCcCCCCCcCCCcc-------ChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            344447788888888       8888888888888888888888888776

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=2.3e-09  Score=68.14  Aligned_cols=43  Identities=14%  Similarity=0.121  Sum_probs=35.2

Q ss_pred             ccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           38 PTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        38 ~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      ++.|.++++|.|+.|       ++.|.....|..|+++|++++||.|++|
T Consensus         4 ~~~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            4 GSSGTGEKPYKCEEC-------GKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSCCCSEECSSS-------CCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCcCccCCCc-------cchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            344447888888888       8888888888888888888888888876

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=2.3e-09  Score=68.11  Aligned_cols=42  Identities=17%  Similarity=0.232  Sum_probs=31.1

Q ss_pred             cccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           39 TTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        39 ~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      ++|.++++|.|+.|       ++.|.....|..|+++|++++||.|++|
T Consensus         5 ~~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            5 SSGTGEKPYKCNEC-------GKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCTTCCTTT-------CCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             cCCCCCcCcCCCCC-------CCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            33447777777777       7777777777777777777777777766

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=5.2e-10  Score=70.48  Aligned_cols=40  Identities=13%  Similarity=0.043  Sum_probs=36.8

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSS  198 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~  198 (332)
                      .|+++|++++||+|++|++.|.+...|..|+++   ++||+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            488899999999999999999999999999888   8999985

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.8e-09  Score=68.64  Aligned_cols=41  Identities=12%  Similarity=0.055  Sum_probs=28.4

Q ss_pred             ccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           40 TQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        40 ~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      .|.++++|.|+.|       ++.|.....|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            6 SGTGERPHKCNEC-------GKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSEECSSS-------CCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CcCCCCCeeCCCC-------ChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3346677777777       7777777777777777777777777665

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=4.6e-10  Score=71.42  Aligned_cols=41  Identities=17%  Similarity=0.161  Sum_probs=38.1

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSV  199 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~  199 (332)
                      .|+++|++++||.|++|++.|.+...|..|+++   ++||+|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            388999999999999999999999999999998   89999974

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.6e-09  Score=68.94  Aligned_cols=38  Identities=18%  Similarity=0.248  Sum_probs=22.7

Q ss_pred             CCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           43 KKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        43 ~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      ++++|.|+.|       ++.|.....|..|+++|++++||+|+.|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            9 GERPYGCNEC-------GKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCEECSSS-------CCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCEEcccc-------CcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            5556666665       5666666666666666666666666554

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=8.8e-10  Score=70.16  Aligned_cols=40  Identities=18%  Similarity=0.122  Sum_probs=36.8

Q ss_pred             cccccCCCCceecccccccccCcccccccccC---CCCccCCC
Q 038715          160 RDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSV  199 (332)
Q Consensus       160 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~  199 (332)
                      |+++|++++||.|++|++.|.+...|..|+++   ++||+|+.
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            78899999999999999999999999999988   89999973

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=2.3e-09  Score=68.08  Aligned_cols=42  Identities=12%  Similarity=0.106  Sum_probs=32.0

Q ss_pred             cccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           39 TTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        39 ~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      +.|.++++|.|+.|       ++.|.....|..|+++|++++||+|+.|
T Consensus         5 ~~H~~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            5 SSGSGEKSHTCDEC-------GKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCSSEECTTT-------CCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             ccCCCCCCeECCCc-------CcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            33447778888887       7888888888888888888888888766

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=2e-09  Score=68.42  Aligned_cols=41  Identities=15%  Similarity=0.209  Sum_probs=27.9

Q ss_pred             ccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           40 TQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        40 ~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      .|.++++|.|+.|       ++.|.....|..|+++|++++||.|++|
T Consensus         6 ~H~~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            6 SGSGEKPYKCNEC-------GKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSSCSEECSSS-------CCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             cCCCCCCEeCCcC-------CCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            3336667777776       7777777777777777777777777665

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.9e-09  Score=68.55  Aligned_cols=40  Identities=18%  Similarity=0.162  Sum_probs=26.3

Q ss_pred             cCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           41 QVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        41 ~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      |.++++|.|+.|       ++.|.....|..|+++|++++||.|++|
T Consensus         7 H~~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            7 GTGENPYECHEC-------GKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCEECSSS-------CCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCcCcCCCCC-------CcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            336666666666       6666666666666666666666666655

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.8e-09  Score=68.64  Aligned_cols=40  Identities=23%  Similarity=0.252  Sum_probs=25.8

Q ss_pred             cCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           41 QVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        41 ~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      |.++++|.|+.|       ++.|.....|..|+++|++++||.|++|
T Consensus         7 H~~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            7 GTGERPYICTVC-------GKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCSEECTTT-------CCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCcCCCCC-------CchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            336666666666       6666666666666666666666666655

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=6e-10  Score=70.12  Aligned_cols=40  Identities=18%  Similarity=0.188  Sum_probs=36.8

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSS  198 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~  198 (332)
                      .|+++|++++||.|++|++.|.+...|..|+++   ++||+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            388899999999999999999999999999988   8999985

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=2.3e-09  Score=68.10  Aligned_cols=40  Identities=13%  Similarity=0.132  Sum_probs=25.2

Q ss_pred             cCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           41 QVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        41 ~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      |.++++|.|+.|       ++.|.....|..|+++|++++||+|++|
T Consensus         7 H~~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            7 GTGEKPYKCSDC-------GKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CSSCCSCBCSSS-------CCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCccCCcc-------ChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            335666666666       6666666666666666666666666655

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=8.5e-10  Score=69.48  Aligned_cols=40  Identities=10%  Similarity=-0.006  Sum_probs=37.3

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSS  198 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~  198 (332)
                      .|+++|++++||.|++|++.|.+...|..|+++   ++||+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            488999999999999999999999999999998   8999985

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.8e-09  Score=68.62  Aligned_cols=38  Identities=18%  Similarity=0.234  Sum_probs=23.1

Q ss_pred             CCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           43 KKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        43 ~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      ++++|.|+.|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            9 GVKPYMCNEC-------GKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------CCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CCcCeECCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5556666666       6666666666666666666666666554

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=2.5e-09  Score=67.97  Aligned_cols=41  Identities=12%  Similarity=0.139  Sum_probs=31.4

Q ss_pred             ccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           40 TQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        40 ~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      .|.++++|.|+.|       ++.|.....|..|+++|++++||.|++|
T Consensus         6 ~H~~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            6 SGSGEKPFKCEEC-------GKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSEEETTT-------TEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CCCCCCCeeCCCC-------CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3347777888887       7888888888888888888888888766

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=2e-09  Score=67.72  Aligned_cols=39  Identities=13%  Similarity=0.026  Sum_probs=26.3

Q ss_pred             CCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           42 VKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        42 ~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      .++++|.|+.|       ++.|.....|..|+++|++++||.|++|
T Consensus         6 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            6 SGEKPFGCSCC-------EKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             SSCCCEECSSS-------SCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCcCccCCCC-------CcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            36666667666       6666666666667666666666666655

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.81  E-value=1.2e-09  Score=76.54  Aligned_cols=56  Identities=23%  Similarity=0.420  Sum_probs=49.3

Q ss_pred             hccccCCCcccccc--ChhhhcCchhhHHHHHH-hCCCCeee--e-cCCccccchhHhhcCC
Q 038715           73 FCRKHGEKKWKCDK--CSKCYAVQSDWKAHTKI-CGTREHRC--D-CGIIFSSQNLAASGGM  128 (332)
Q Consensus        73 ~~~h~~ek~~~C~~--C~~~f~~~~~L~~H~~~-h~~k~~~C--~-C~k~f~~~~~l~~h~~  128 (332)
                      ...+...++|.|..  |++.|.....|..|+++ +++++|.|  + |++.|.....|..|.+
T Consensus         9 ~~~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~   70 (72)
T 2epa_A            9 QIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR   70 (72)
T ss_dssp             CCCCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTT
T ss_pred             CCCccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhh
Confidence            44566788999988  99999999999999999 58999999  5 9999999999996544

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.81  E-value=2.1e-09  Score=68.33  Aligned_cols=38  Identities=13%  Similarity=0.176  Sum_probs=22.0

Q ss_pred             CCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           43 KKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        43 ~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      ++++|.|+.|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            9 GEKPFKCVEC-------GKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSBCCSSS-------CCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCcccCcc-------CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5555555555       5555555555555555555555555554

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=2.2e-09  Score=68.27  Aligned_cols=40  Identities=15%  Similarity=0.133  Sum_probs=26.2

Q ss_pred             cCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           41 QVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        41 ~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      |.++++|.|+.|       ++.|.....|..|+++|++++||+|++|
T Consensus         7 H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            7 GSGEKPYKCSEC-------GKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             SCCCCSEECSSS-------CCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             cCCCcCeECCCC-------CCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            336666666666       6666666666666666666666666655

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=6.8e-10  Score=70.65  Aligned_cols=40  Identities=18%  Similarity=0.161  Sum_probs=37.7

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSS  198 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~  198 (332)
                      .|+++|++++||.|++|++.|.+...|..|+++   ++||+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            388999999999999999999999999999988   8999996

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.81  E-value=4.1e-10  Score=76.92  Aligned_cols=41  Identities=2%  Similarity=0.000  Sum_probs=18.3

Q ss_pred             cccccCCCCceecccccccccCcccccccccC-CCCccCCCCC
Q 038715          160 RDNIENSLRPLSMSSVGVMVSSNLDPILTSRV-SKPYLSSVCG  201 (332)
Q Consensus       160 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~-~~p~~C~~C~  201 (332)
                      |+++|++++||.|+.|++.|.+...|. -... ++||+|++|+
T Consensus         5 h~~~H~~~k~~~C~~C~k~F~~~~~l~-~~H~~~k~~~C~~C~   46 (62)
T 1vd4_A            5 DERDSTNRASFKCPVCSSTFTDLEANQ-LFDPMTGTFRCTFCH   46 (62)
T ss_dssp             CSSSCCSSSEEECSSSCCEEEHHHHHH-HEETTTTEEBCSSSC
T ss_pred             HHHHcCCCCCccCCCCCchhccHHHhH-hhcCCCCCEECCCCC
Confidence            444444445555555555554444443 0001 4445555555

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=2.2e-09  Score=68.16  Aligned_cols=39  Identities=10%  Similarity=-0.006  Sum_probs=24.6

Q ss_pred             CCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           42 VKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        42 ~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      .++++|.|+.|       ++.|.....|..|+++|++++||.|++|
T Consensus         8 ~~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            8 TGEKPCKCTEC-------GKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSS-------CCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CCCCCeeCCCC-------CCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            35666666666       6666666666666666666666666655

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.81  E-value=3e-09  Score=67.61  Aligned_cols=42  Identities=12%  Similarity=0.086  Sum_probs=32.3

Q ss_pred             cccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           39 TTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        39 ~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      ++|.++++|.|+.|       ++.|.....|..|+++|++++||.|++|
T Consensus         5 ~~h~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            5 SSGAGVNPYKCSQC-------EKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCSEECSSS-------SCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCeECCCC-------CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34447778888888       8888888888888888888888888776

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=7.6e-10  Score=70.38  Aligned_cols=41  Identities=17%  Similarity=0.147  Sum_probs=37.7

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSV  199 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~  199 (332)
                      .|+++|++++||.|++|++.|.+...|..|+++   ++||+|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            388999999999999999999999999999988   89999973

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=2.4e-09  Score=68.05  Aligned_cols=43  Identities=14%  Similarity=0.146  Sum_probs=32.8

Q ss_pred             ccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           38 PTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        38 ~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      +++|.++++|.|+.|       ++.|.....|..|+++|++++||.|++|
T Consensus         4 ~~~h~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            4 GSSGTGEKPYKCEKC-------GKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSEEETTT-------TEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CcCCCCCCCeECCCC-------CCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            344447778888888       8888888888888888888888888776

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=8.2e-10  Score=68.80  Aligned_cols=38  Identities=13%  Similarity=0.084  Sum_probs=35.5

Q ss_pred             cccccCCCCceecccccccccCcccccccccC---CCCccC
Q 038715          160 RDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLS  197 (332)
Q Consensus       160 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C  197 (332)
                      |+++|++++||+|++|++.|.+.+.|..|+++   ++||+|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            77899999999999999999999999999998   889987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=2e-09  Score=68.44  Aligned_cols=39  Identities=13%  Similarity=0.144  Sum_probs=24.3

Q ss_pred             CCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           42 VKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        42 ~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      .++++|.|+.|       ++.|.....|..|+++|++++||.|++|
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            8 TGEKPYKCNEC-------GKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCSSEECSSS-------CCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CCCCCeECCcC-------CchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            35666666666       6666666666666666666666666555

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=2.4e-09  Score=68.13  Aligned_cols=44  Identities=16%  Similarity=0.235  Sum_probs=40.1

Q ss_pred             CccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           37 RPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        37 ~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      |+++|.++++|.|+.|       ++.|.....|..|+++|++++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMEC-------GKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTT-------TBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3445559999999999       9999999999999999999999999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=2.9e-09  Score=67.68  Aligned_cols=42  Identities=12%  Similarity=0.106  Sum_probs=29.3

Q ss_pred             cccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           39 TTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        39 ~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      +.|.++++|.|+.|       ++.|.....|..|+++|++++||+|++|
T Consensus         5 ~~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            5 SSGSGEKPFKCEEC-------GKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCCCSEECSSS-------CCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCcCCCCC-------CCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            33446677777777       7777777777777777777777777665

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=1.7e-09  Score=67.23  Aligned_cols=40  Identities=18%  Similarity=0.370  Sum_probs=22.8

Q ss_pred             hhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCeee
Q 038715           72 HFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRC  111 (332)
Q Consensus        72 H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C  111 (332)
                      |+++|++++||.|++|++.|...+.|..|+++ +++++|.|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            44555555556666666666555556555555 35555555

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=2.5e-09  Score=67.93  Aligned_cols=40  Identities=15%  Similarity=0.144  Sum_probs=25.8

Q ss_pred             cCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           41 QVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        41 ~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      |.++++|.|+.|       ++.|.....|..|+++|++++||.|++|
T Consensus         7 H~~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            7 GSGEKPYGCNEC-------GKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCEEETTT-------TEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             cCCCcCeECCCC-------CcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            336666666666       6666666666666666666666666655

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=3.5e-09  Score=67.26  Aligned_cols=42  Identities=19%  Similarity=0.214  Sum_probs=31.9

Q ss_pred             cccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           39 TTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        39 ~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      +.|.++++|.|+.|       ++.|.....|..|+++|++++||.|++|
T Consensus         5 ~~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            5 SSGTGEKPYRCAEC-------GKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSSCCCSEECSSS-------CCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCeECCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34447778888888       8888888888888888888888888764

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=3e-09  Score=67.57  Aligned_cols=42  Identities=10%  Similarity=0.087  Sum_probs=29.3

Q ss_pred             cccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           39 TTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        39 ~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      +.|.++++|.|+.|       ++.|.....|..|+++|++++||+|++|
T Consensus         5 ~~H~~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            5 SSGSREKSHQCREC-------GEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCSSCCCCEECTTT-------CCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cccCCCCCEEcccc-------ChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            33446677777777       7777777777777777777777777665

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=1.1e-09  Score=68.90  Aligned_cols=40  Identities=8%  Similarity=0.046  Sum_probs=37.0

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC---CCCccCC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSS  198 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~  198 (332)
                      .|+++|++++||.|++|++.|.+...|..|+++   ++||+|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            388999999999999999999999999999988   8999984

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=1.5e-09  Score=69.05  Aligned_cols=40  Identities=28%  Similarity=0.504  Sum_probs=20.9

Q ss_pred             hhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCeee
Q 038715           72 HFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRC  111 (332)
Q Consensus        72 H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C  111 (332)
                      |+++|++++||.|++|++.|.....|..|+++ +++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP   43 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTT
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCC
Confidence            44555555555555555555555555555555 34455544

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.77  E-value=1.5e-09  Score=71.78  Aligned_cols=51  Identities=14%  Similarity=0.221  Sum_probs=46.9

Q ss_pred             CCccCChhhHhhhhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCee
Q 038715           60 SRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHR  110 (332)
Q Consensus        60 ~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~  110 (332)
                      ++.|.....|..|+++|+++++|.|++|++.|...+.|..|+++ ++++||.
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            67888999999999999999999999999999999999999999 5888873

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=1.6e-09  Score=68.89  Aligned_cols=40  Identities=25%  Similarity=0.478  Sum_probs=21.6

Q ss_pred             hhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCeee
Q 038715           72 HFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRC  111 (332)
Q Consensus        72 H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C  111 (332)
                      |+++|+++++|.|++|++.|.....|..|+++ ++++||.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP   43 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCS
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            45555555555555555555555555555555 34555554

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=5e-09  Score=66.75  Aligned_cols=42  Identities=21%  Similarity=0.241  Sum_probs=31.2

Q ss_pred             cccCCCcceecCCCCCCCCCCCCccCChhhHhhhhc-cccCCCccccccC
Q 038715           39 TTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFC-RKHGEKKWKCDKC   87 (332)
Q Consensus        39 ~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~-~h~~ek~~~C~~C   87 (332)
                      +.|.++++|.|+.|       ++.|.....|..|++ +|++++||+|+.|
T Consensus         5 ~~H~~~k~~~C~~C-------~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            5 SSGTGKKPYECIEC-------GKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCSBCCSSS-------CCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccCCCCCEECCcc-------CchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            34447777777777       777777777777777 7777777777766

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=2.1e-09  Score=67.65  Aligned_cols=41  Identities=17%  Similarity=0.379  Sum_probs=26.8

Q ss_pred             hhhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCeee
Q 038715           71 KHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRC  111 (332)
Q Consensus        71 ~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C  111 (332)
                      .|+++|++++||.|++|++.|.....|..|+++ +++++|.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS   43 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCC
Confidence            356666666666666666666666666666666 45666665

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=3.3e-09  Score=67.46  Aligned_cols=40  Identities=15%  Similarity=0.076  Sum_probs=24.6

Q ss_pred             cCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           41 QVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        41 ~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      |.++++|.|+.|       ++.|.....|..|+++|++++||.|++|
T Consensus         7 h~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            7 GSGEKPYKCVEC-------GKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCSCCSEECSSS-------CCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCeECccc-------CchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            335666666666       6666666666666666666666666555

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.76  E-value=5.5e-09  Score=67.10  Aligned_cols=38  Identities=24%  Similarity=0.451  Sum_probs=36.4

Q ss_pred             CCCceecccccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCCC
Q 038715            2 ATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKP   52 (332)
Q Consensus         2 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C   52 (332)
                      ++++|.|++|++.|.+...|..|+++|+             ++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (48)
T 2epr_A            9 TRKQVACEICGKIFRDVYHLNRHKLSHS-------------GEKPYSSGPS   46 (48)
T ss_dssp             CCCSEEETTTTEEESSHHHHHHHGGGSC-------------SCCCCCSCCC
T ss_pred             CCcCeeCCCCCcccCCHHHHHHHHHhcC-------------CCCCccCCCC
Confidence            5789999999999999999999999998             8999999999

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=2e-09  Score=67.67  Aligned_cols=40  Identities=23%  Similarity=0.518  Sum_probs=22.1

Q ss_pred             hhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCeee
Q 038715           72 HFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRC  111 (332)
Q Consensus        72 H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C  111 (332)
                      |+++|+++++|.|++|++.|.....|..|+++ ++++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS   43 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCC
Confidence            45555555555555555555555555555555 35555554

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=1.8e-09  Score=69.28  Aligned_cols=41  Identities=17%  Similarity=0.122  Sum_probs=38.0

Q ss_pred             cccccCCCCceecc--cccccccCcccccccccC---CCCccCCCC
Q 038715          160 RDNIENSLRPLSMS--SVGVMVSSNLDPILTSRV---SKPYLSSVC  200 (332)
Q Consensus       160 h~~~h~~~k~~~C~--~C~k~F~~~~~L~~H~~~---~~p~~C~~C  200 (332)
                      |.++|++++||+|.  .|++.|.+...|..|+++   ++||+|++|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67889999999998  899999999999999988   899999988

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=1.8e-09  Score=68.64  Aligned_cols=40  Identities=18%  Similarity=0.400  Sum_probs=22.9

Q ss_pred             hhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCeee
Q 038715           72 HFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRC  111 (332)
Q Consensus        72 H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C  111 (332)
                      |+++|+++++|.|++|++.|.....|..|+++ +++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP   43 (46)
T ss_dssp             SCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSC
T ss_pred             ccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            55555555555555555555555555555555 35555555

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.75  E-value=4.7e-09  Score=66.37  Aligned_cols=39  Identities=23%  Similarity=0.470  Sum_probs=37.1

Q ss_pred             CCCCceecccccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCCC
Q 038715            1 MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKP   52 (332)
Q Consensus         1 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C   52 (332)
                      ++++||.|+.|++.|.....|..|+++|+             ++++|.|+.|
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~-------------~~~~~~C~~c   44 (45)
T 2epq_A            6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHD-------------GSVGKSGPSS   44 (45)
T ss_dssp             SSCCSSEETTTTEECSCHHHHHHHHHHHS-------------CCCCCCCCCC
T ss_pred             CCCCCCcCCCCCcccCCHHHHHHHHHHcc-------------CCCCCCCcCC
Confidence            47899999999999999999999999998             8999999998

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=1.7e-09  Score=68.48  Aligned_cols=40  Identities=15%  Similarity=0.163  Sum_probs=36.6

Q ss_pred             cccccCCCCceecccccccccCcccccccccC---CCCccCCC
Q 038715          160 RDNIENSLRPLSMSSVGVMVSSNLDPILTSRV---SKPYLSSV  199 (332)
Q Consensus       160 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---~~p~~C~~  199 (332)
                      +.++|++++||+|++|++.|.+...|..|+++   ++||+|++
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            56789999999999999999999999999988   89999974

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.74  E-value=2.8e-09  Score=66.25  Aligned_cols=40  Identities=15%  Similarity=0.357  Sum_probs=23.9

Q ss_pred             hhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCeee
Q 038715           72 HFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRC  111 (332)
Q Consensus        72 H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C  111 (332)
                      |+++|++++||.|++|++.|...+.|..|+++ ++++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            45556666666666666666666666666665 35555554

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=2.2e-09  Score=66.77  Aligned_cols=40  Identities=25%  Similarity=0.475  Sum_probs=23.0

Q ss_pred             hhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCeee
Q 038715           72 HFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRC  111 (332)
Q Consensus        72 H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C  111 (332)
                      |+++|++++||.|++|++.|.....|..|+++ .+++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            45555555566666666666666666666555 35555554

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.74  E-value=2.4e-09  Score=73.05  Aligned_cols=49  Identities=16%  Similarity=0.292  Sum_probs=23.2

Q ss_pred             hhhhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCeeee-cCCccccch
Q 038715           70 KKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRCD-CGIIFSSQN  121 (332)
Q Consensus        70 ~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C~-C~k~f~~~~  121 (332)
                      ..|+++|++++||.|+.|++.|.....|.   ++ .+++||.|+ |++.|....
T Consensus         3 ~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~   53 (62)
T 1vd4_A            3 ETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDE   53 (62)
T ss_dssp             CCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECT
T ss_pred             hhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCc
Confidence            34444555555555555555554444443   23 244555554 555554443

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=3e-09  Score=67.66  Aligned_cols=40  Identities=25%  Similarity=0.507  Sum_probs=20.3

Q ss_pred             hhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCeee
Q 038715           72 HFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRC  111 (332)
Q Consensus        72 H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C  111 (332)
                      |+++|+++++|.|++|++.|.....|..|+++ ++++||.|
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            44455555555555555555555555555554 34455544

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.73  E-value=4.7e-09  Score=67.43  Aligned_cols=42  Identities=17%  Similarity=0.263  Sum_probs=37.3

Q ss_pred             cCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccChh
Q 038715           41 QVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSK   89 (332)
Q Consensus        41 ~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~   89 (332)
                      +..+++|.|++|       ++.|.....|..|+++|++++||.|++|++
T Consensus         7 ~~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEIC-------GKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTT-------TEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCcCeeCCCC-------CcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            447889999999       999999999999999999999999999975

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=2.6e-09  Score=67.90  Aligned_cols=41  Identities=15%  Similarity=0.193  Sum_probs=20.1

Q ss_pred             CccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcccc
Q 038715           37 RPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKC   84 (332)
Q Consensus        37 ~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C   84 (332)
                      |+++|.++++|.|+.|       ++.|.....|..|+++|++++||+|
T Consensus         3 H~~~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eoh_A            3 SGSSGSGKKPYECKEC-------RKTFIQIGHLNQHKRVHTGERSSGP   43 (46)
T ss_dssp             CCCSCCCSCSCCCSSS-------CCCCSSHHHHHHHHHHCSSCCSCST
T ss_pred             CCCCcCCCCCcCCCCc-------CchhCCHHHHHHHHHHhCCCCCCCC
Confidence            3344444445555554       4555555555555555555555544

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=6.4e-09  Score=66.05  Aligned_cols=40  Identities=15%  Similarity=0.161  Sum_probs=25.5

Q ss_pred             cCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           41 QVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        41 ~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      |.++++|.|+.|       ++.|.....|..|+++|++++||+|++|
T Consensus         7 H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            7 GSGEKPFKCKEC-------GKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSEECSSS-------CCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCEECCcC-------CchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            336666666666       6666666666666666666666666543

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=2.7e-09  Score=67.82  Aligned_cols=41  Identities=20%  Similarity=0.454  Sum_probs=24.1

Q ss_pred             hhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCeeee
Q 038715           72 HFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRCD  112 (332)
Q Consensus        72 H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C~  112 (332)
                      |+++|.++++|.|++|++.|.....|..|+++ +++++|.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            55555666666666666666666666666555 355555553

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=8e-09  Score=65.55  Aligned_cols=42  Identities=14%  Similarity=0.112  Sum_probs=34.5

Q ss_pred             cccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           39 TTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        39 ~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      +.|.++++|.|+.|       ++.|.....|..|+++|++++||+|++|
T Consensus         5 ~~h~~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            5 SSGTGEKPYKCDVC-------HKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSTTCCSEECSSS-------CCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCeeCccc-------CcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            34457888888888       8888888888888888888888888876

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=2.7e-09  Score=67.80  Aligned_cols=42  Identities=17%  Similarity=0.260  Sum_probs=28.9

Q ss_pred             hhhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCeeee
Q 038715           71 KHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRCD  112 (332)
Q Consensus        71 ~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C~  112 (332)
                      .|+++|++++||.|++|++.|.....|..|+++ ++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            466667777777777777777777777777766 466666664

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=5.3e-09  Score=65.75  Aligned_cols=40  Identities=15%  Similarity=0.262  Sum_probs=21.1

Q ss_pred             hhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCeee
Q 038715           72 HFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRC  111 (332)
Q Consensus        72 H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C  111 (332)
                      |+++|+++++|.|++|++.|.....|..|+++ ++++||.|
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSS   43 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCC
Confidence            44455555555555555555555555555555 34555554

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=3.5e-09  Score=67.30  Aligned_cols=42  Identities=12%  Similarity=0.085  Sum_probs=24.8

Q ss_pred             CccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccC-CCccccc
Q 038715           37 RPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHG-EKKWKCD   85 (332)
Q Consensus        37 ~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~-ek~~~C~   85 (332)
                      |++.|.++++|.|+.|       ++.|.....|..|+++|++ ++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKC-------EKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCEECSSS-------CCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CccccCCCCCEECcCC-------CCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4455555566666666       6666666666666666665 5666554

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=1.5e-08  Score=64.23  Aligned_cols=41  Identities=17%  Similarity=0.240  Sum_probs=29.6

Q ss_pred             cccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcccccc
Q 038715           39 TTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDK   86 (332)
Q Consensus        39 ~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~   86 (332)
                      +.|.++++|.|+.|       ++.|.....|..|+++|++++||.|++
T Consensus         5 ~~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            5 SSGTGGKPYQCNEC-------GKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSSSCSSSCCSS-------CCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             cccCCCCCeECCCC-------CcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            33447777777777       777777777777777777777777753

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=1.4e-08  Score=64.33  Aligned_cols=39  Identities=15%  Similarity=0.189  Sum_probs=27.5

Q ss_pred             ccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccc
Q 038715           40 TQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCD   85 (332)
Q Consensus        40 ~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~   85 (332)
                      +|.++++|.|+.|       ++.|.....|..|+++|++++||.|+
T Consensus         6 ~H~~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            6 SGTGEKPYKCNEC-------GKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSCBCSSS-------CCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CCCCCcCeECCCC-------CcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            3346777777777       77777777777777777777777775

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.67  E-value=8.5e-09  Score=65.14  Aligned_cols=41  Identities=12%  Similarity=0.127  Sum_probs=32.0

Q ss_pred             cCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccCh
Q 038715           41 QVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCS   88 (332)
Q Consensus        41 ~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C~   88 (332)
                      |.++++|.|+.|       ++.|.....|..|+++|+++++|.|+.|+
T Consensus         5 h~~~k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            5 SSGEKPYSCPVC-------GLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CSSCCSSEETTT-------TEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             cCCCCCCcCCCC-------CcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            447778888887       78888888888888888888888887775

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=1.7e-08  Score=63.94  Aligned_cols=41  Identities=12%  Similarity=0.151  Sum_probs=29.4

Q ss_pred             cccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcccccc
Q 038715           39 TTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDK   86 (332)
Q Consensus        39 ~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~   86 (332)
                      ..|.++++|.|+.|       ++.|.....|..|+++|++++||.|++
T Consensus         5 ~~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            5 SSGTGEKPYECSDC-------GKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCSSCCSSCCSSS-------CCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             cCCCCCCCcCCCCC-------CchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            33447777777777       777777777777777777777777753

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.67  E-value=3.3e-09  Score=70.01  Aligned_cols=52  Identities=13%  Similarity=0.138  Sum_probs=47.8

Q ss_pred             cccccChhHHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccc
Q 038715           12 HKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWK   83 (332)
Q Consensus        12 ~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~   83 (332)
                      ++.|.....|..|++.|.             ++++|.|+.|       ++.|.....|..|+++|++++||.
T Consensus         3 ~k~~~~~~~l~~h~~~H~-------------~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQ-------------SEQPATCPIC-------YAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHT-------------SSCCEECTTT-------CCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhcC-------------CCCCccCCCC-------CcccCCHHHHHHHHHHhccCCCCC
Confidence            467888889999999998             8999999999       999999999999999999999874

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1.8e-08  Score=63.96  Aligned_cols=39  Identities=13%  Similarity=0.161  Sum_probs=27.8

Q ss_pred             ccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccc
Q 038715           40 TQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCD   85 (332)
Q Consensus        40 ~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~   85 (332)
                      .|.++++|.|+.|       ++.|.....|..|+++|++++||.|+
T Consensus         6 ~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            6 SGSGEKPFQCEEC-------GKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSSBCCSSS-------CCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             CCCCCcCCCCCCC-------CcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            3346777777777       77777777777777777777777775

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=7.5e-09  Score=65.73  Aligned_cols=41  Identities=12%  Similarity=0.182  Sum_probs=30.6

Q ss_pred             ccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           40 TQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        40 ~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      +|.++++|.|++|       ++.|.....|..|+++|++++||.|++|
T Consensus         6 ~h~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            6 SGEGEKPYQCSEC-------GKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SCSCCCTTCCSSS-------CCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCeeCCCC-------CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3446777777777       7777777777777777777777777766

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1.6e-08  Score=64.12  Aligned_cols=40  Identities=13%  Similarity=0.215  Sum_probs=29.1

Q ss_pred             cccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccc
Q 038715           39 TTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCD   85 (332)
Q Consensus        39 ~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~   85 (332)
                      ..|.++++|.|+.|       ++.|.....|..|+++|++++||+|+
T Consensus         5 ~~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            5 SSGTGENPFICSEC-------GKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCSCCSCBCTTT-------CCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCEECCcc-------CcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            33446777777777       77777777777777777777777775

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1.4e-08  Score=64.49  Aligned_cols=39  Identities=18%  Similarity=0.196  Sum_probs=27.9

Q ss_pred             ccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccc
Q 038715           40 TQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCD   85 (332)
Q Consensus        40 ~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~   85 (332)
                      .|.++++|.|+.|       ++.|.....|..|+++|++++||.|+
T Consensus         6 ~H~~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            6 SGTGERHYECSEC-------GKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSCCCCCEECSSS-------CCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             CcCCCCCeECCcC-------CcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            3346777777777       77777777777777777777777775

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.66  E-value=1.1e-08  Score=64.87  Aligned_cols=36  Identities=14%  Similarity=0.168  Sum_probs=21.9

Q ss_pred             CCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccc
Q 038715           43 KKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCD   85 (332)
Q Consensus        43 ~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~   85 (332)
                      ++++|.|+.|       ++.|.....|..|+++|++++||.|+
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            9 GEKPFECAEC-------GKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSEECSSS-------SCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCEECCCC-------CcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            5556666666       66666666666666666666666654

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1.2e-08  Score=64.63  Aligned_cols=43  Identities=19%  Similarity=0.196  Sum_probs=38.6

Q ss_pred             CccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcccccc
Q 038715           37 RPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDK   86 (332)
Q Consensus        37 ~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~   86 (332)
                      |++.|.++++|.|+.|       ++.|.....|..|+++|++++||.|++
T Consensus         3 H~~~H~~~~~~~C~~C-------~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            3 SGSSGTGEKPYECKVC-------SKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSEECSSS-------CCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCcCeECCCC-------CcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4445559999999999       999999999999999999999999974

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=1.3e-08  Score=64.65  Aligned_cols=37  Identities=19%  Similarity=0.183  Sum_probs=22.5

Q ss_pred             CCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccc
Q 038715           42 VKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCD   85 (332)
Q Consensus        42 ~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~   85 (332)
                      .++++|.|+.|       ++.|.....|..|+++|++++||+|+
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            8 TGQRPYECIEC-------GKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             CCSSSEECSSS-------CCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CCCcCcCCCCC-------CCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            35566666666       66666666666666666666666654

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.7e-08  Score=63.95  Aligned_cols=41  Identities=15%  Similarity=0.238  Sum_probs=30.0

Q ss_pred             cccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcccccc
Q 038715           39 TTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDK   86 (332)
Q Consensus        39 ~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~   86 (332)
                      ++|.++++|.|+.|       ++.|.....|..|+++|++++||.|++
T Consensus         5 ~~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            5 SSGTGEKPYICNEC-------GKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCCSEECSSS-------CCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCcCEECCCC-------ChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            33447777777777       777777777777777777777777753

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.6e-08  Score=64.06  Aligned_cols=40  Identities=18%  Similarity=0.246  Sum_probs=28.3

Q ss_pred             cccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccc
Q 038715           39 TTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCD   85 (332)
Q Consensus        39 ~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~   85 (332)
                      ++|.++++|.|+.|       ++.|.....|..|+++|++++||.|+
T Consensus         5 ~~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            5 SSGTGEKPYKCNEC-------GKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCCTTT-------TCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             cccCCCCCeECCcC-------ChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            33446777777777       77777777777777777777777775

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.6e-08  Score=64.12  Aligned_cols=41  Identities=15%  Similarity=0.203  Sum_probs=29.9

Q ss_pred             cccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcccccc
Q 038715           39 TTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDK   86 (332)
Q Consensus        39 ~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~   86 (332)
                      +.|.++++|.|+.|       ++.|.....|..|+++|++++||.|++
T Consensus         5 ~~H~~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            5 SSGTGEKPYKCNEC-------GKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCTTCCSSS-------CCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             cCCCCCcCeECCCC-------CcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            33447777777777       777777777777777777777777753

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.7e-08  Score=64.05  Aligned_cols=41  Identities=15%  Similarity=0.203  Sum_probs=32.0

Q ss_pred             cccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcccccc
Q 038715           39 TTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDK   86 (332)
Q Consensus        39 ~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~   86 (332)
                      +.|.++++|.|++|       ++.|.....|..|+++|++++||.|++
T Consensus         5 ~~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            5 SSGTGEKPYKCQVC-------GKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             SSCSSCCSCBCSSS-------CCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCcccCCCCC-------CcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            34447788888888       888888888888888888888888863

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.9e-08  Score=63.81  Aligned_cols=40  Identities=18%  Similarity=0.198  Sum_probs=27.6

Q ss_pred             cccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccc
Q 038715           39 TTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCD   85 (332)
Q Consensus        39 ~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~   85 (332)
                      +.|.++++|.|+.|       ++.|.....|..|+++|++++||+|+
T Consensus         5 ~~H~~~~~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            5 SSGTGERHYECSEC-------GKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CSCSSCCCEECSSS-------CCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             cccCCCCCCCCCCC-------CcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            33446677777777       77777777777777777777777765

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.5e-08  Score=64.20  Aligned_cols=40  Identities=15%  Similarity=0.198  Sum_probs=27.8

Q ss_pred             ccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcccccc
Q 038715           40 TQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDK   86 (332)
Q Consensus        40 ~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~   86 (332)
                      .|.++++|.|+.|       ++.|.....|..|+++|++++||.|++
T Consensus         6 ~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            6 SGTGEKPFECSEC-------QKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCCCSEECSSS-------CCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCcCCCCC-------CcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3346677777777       777777777777777777777777753

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.8e-08  Score=63.93  Aligned_cols=41  Identities=15%  Similarity=0.229  Sum_probs=30.1

Q ss_pred             cccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcccccc
Q 038715           39 TTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDK   86 (332)
Q Consensus        39 ~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~   86 (332)
                      ..|.++++|.|+.|       ++.|.....|..|+++|++++||.|++
T Consensus         5 ~~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            5 SSGMGEKCYKCDVC-------GKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCCCCBCSSS-------CCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             cccCCCCCeECCCC-------CcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            33447777778777       777877777877877777777777753

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.65  E-value=1.7e-08  Score=62.54  Aligned_cols=35  Identities=17%  Similarity=0.231  Sum_probs=23.3

Q ss_pred             CCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcccc
Q 038715           43 KKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKC   84 (332)
Q Consensus        43 ~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C   84 (332)
                      ++++|.|+.|       ++.|.....|..|+++|++++||.|
T Consensus         7 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A            7 GENPYECSEC-------GKAFNRKDQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             SCCSEECSSS-------CCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred             CCCCccCCCc-------ChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            6666666666       6666666666666666666666666

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.5e-08  Score=64.19  Aligned_cols=37  Identities=19%  Similarity=0.246  Sum_probs=23.6

Q ss_pred             CCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccc
Q 038715           42 VKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCD   85 (332)
Q Consensus        42 ~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~   85 (332)
                      .++++|.|+.|       ++.|.....|..|+++|++++||.|+
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            8 TGEKPYKCNEC-------GKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCEECTTS-------CCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             CCCCCeecccc-------CChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            35666666666       66666666666666666666666664

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=2.4e-08  Score=62.62  Aligned_cols=40  Identities=10%  Similarity=0.086  Sum_probs=30.5

Q ss_pred             cccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccc
Q 038715           39 TTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCD   85 (332)
Q Consensus        39 ~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~   85 (332)
                      ..|.++++|.|+.|       ++.|.....|..|+++|++++||.|+
T Consensus         5 ~~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            5 SSGHTRKRYECSKC-------QATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             SCCCCCSSEECTTT-------CCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             cccCCCCCeECCCC-------CCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            34447778888888       88888888888888888888888774

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.9e-08  Score=63.76  Aligned_cols=39  Identities=18%  Similarity=0.238  Sum_probs=27.6

Q ss_pred             ccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccc
Q 038715           40 TQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCD   85 (332)
Q Consensus        40 ~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~   85 (332)
                      +|.++++|.|+.|       ++.|.....|..|+++|++++||.|+
T Consensus         6 ~H~~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            6 SGTGEKPYRCGEC-------GKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCEECSSS-------CCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CCCCCCCeECCCC-------CCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            3346777777777       77777777777777777777777775

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.4e-08  Score=64.30  Aligned_cols=36  Identities=19%  Similarity=0.198  Sum_probs=21.9

Q ss_pred             CCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccc
Q 038715           43 KKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCD   85 (332)
Q Consensus        43 ~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~   85 (332)
                      ++++|.|+.|       ++.|.....|..|+++|++++||.|+
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            9 GEKPYNCEEC-------GKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSEECTTT-------CCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCcCccCCCC-------CCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            5556666666       66666666666666666666666654

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=7e-09  Score=65.24  Aligned_cols=39  Identities=23%  Similarity=0.457  Sum_probs=18.7

Q ss_pred             hhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCee
Q 038715           72 HFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHR  110 (332)
Q Consensus        72 H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~  110 (332)
                      |+++|++++||.|++|++.|...+.|..|+++ ++++||.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPS   42 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCC
Confidence            44444444455555555555554555555444 2444444

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.9e-08  Score=63.75  Aligned_cols=43  Identities=14%  Similarity=0.199  Sum_probs=38.3

Q ss_pred             CccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcccccc
Q 038715           37 RPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDK   86 (332)
Q Consensus        37 ~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~   86 (332)
                      |++.|.++++|.|+.|       ++.|.....|..|+++|++++||.|++
T Consensus         3 h~~~H~~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            3 SGSSGAGKKLFKCNEC-------KKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCSSCCCBCTTT-------CCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCCEECCcc-------CcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            3444558999999999       999999999999999999999999974

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=2.4e-08  Score=62.50  Aligned_cols=37  Identities=19%  Similarity=0.178  Sum_probs=24.6

Q ss_pred             cCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcccc
Q 038715           41 QVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKC   84 (332)
Q Consensus        41 ~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C   84 (332)
                      |.++++|.|+.|       ++.|.....|..|+++|++++||.|
T Consensus         7 H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2en7_A            7 GTGMKPYVCNEC-------GKAFRSKSYLIIHTRTHTGESGPSS   43 (44)
T ss_dssp             SSSSSSSCCTTT-------CCCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred             CCCCcCeECCCC-------CCccCCHHHHHHHhhhcCCCCCCCC
Confidence            336666666666       6666666666666666666666666

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=2.7e-08  Score=61.58  Aligned_cols=38  Identities=13%  Similarity=0.156  Sum_probs=29.2

Q ss_pred             ccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcccc
Q 038715           40 TQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKC   84 (332)
Q Consensus        40 ~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C   84 (332)
                      +|.++++|.|+.|       ++.|.....|..|+++|++++||.|
T Consensus         5 ~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            5 SSGGEKPYRCDQC-------GKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCSCCSBCCTTT-------TCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             ccCCCCCeeCCCc-------cchhCCHHHHHHHHHHhCCCCCCCC
Confidence            3447778888887       7888888888888888888887776

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=2.3e-08  Score=62.65  Aligned_cols=42  Identities=14%  Similarity=0.192  Sum_probs=37.6

Q ss_pred             CccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccc
Q 038715           37 RPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCD   85 (332)
Q Consensus        37 ~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~   85 (332)
                      |+..|.++++|.|+.|       ++.|.....|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            3 SGSSGTGEKPYECNEC-------QKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CSSCCSCCCSEECTTT-------CCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CccCCCCCCCeECCCC-------CcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            3444558999999999       99999999999999999999999985

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=2.6e-08  Score=63.11  Aligned_cols=39  Identities=18%  Similarity=0.217  Sum_probs=26.9

Q ss_pred             ccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccc
Q 038715           40 TQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCD   85 (332)
Q Consensus        40 ~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~   85 (332)
                      +|.++++|.|+.|       ++.|.....|..|+++|++++||.|+
T Consensus         6 ~h~~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            6 SGTGEKPYECDVC-------RKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCSSSCBCTTT-------CCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CcCCCCCcCCCCc-------CchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3446677777777       77777777777777777777777764

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=2.5e-08  Score=61.79  Aligned_cols=40  Identities=10%  Similarity=0.096  Sum_probs=36.4

Q ss_pred             cccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccc
Q 038715           39 TTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCD   85 (332)
Q Consensus        39 ~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~   85 (332)
                      ++|.++++|.|+.|       ++.|.....|..|+++|++++||+|.
T Consensus         3 ~~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            3 SGSSGEKPYSCAEC-------KETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             SSSCSCCSCBCTTT-------CCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             cCcCCCCCeECCCC-------CCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            34448999999999       99999999999999999999999984

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.61  E-value=2.3e-08  Score=62.50  Aligned_cols=38  Identities=13%  Similarity=0.301  Sum_probs=35.0

Q ss_pred             CCCCceecccccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCC
Q 038715            1 MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPK   51 (332)
Q Consensus         1 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~   51 (332)
                      +++++|.|+.|++.|.....|..|+++|+             ++++|.|++
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   43 (43)
T 2yrm_A            6 SGNGAFFCNECDCRFSEEASLKRHTLQTH-------------SDKSGPSSG   43 (43)
T ss_dssp             SSSCCBCCSSSCCCBSSHHHHHHHHHHHT-------------CTTCSSSCC
T ss_pred             CCCCCEECCCCCCeeCChHHHHHHHHhhC-------------CCCCccCCC
Confidence            47899999999999999999999999998             889999864

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=2.2e-08  Score=63.53  Aligned_cols=43  Identities=16%  Similarity=0.257  Sum_probs=38.2

Q ss_pred             CccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcccccc
Q 038715           37 RPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDK   86 (332)
Q Consensus        37 ~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~   86 (332)
                      |+++|.++++|.|+.|       ++.|.....|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDC-------GKAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCEECSSS-------CCEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             cccccCCCCCEECccc-------CCccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            3444558999999999       999999999999999999999999963

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=2.2e-08  Score=63.48  Aligned_cols=42  Identities=21%  Similarity=0.405  Sum_probs=39.0

Q ss_pred             hhhccccCCCccccccChhhhcCchhhHHHHHH-hC-CCCeeee
Q 038715           71 KHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CG-TREHRCD  112 (332)
Q Consensus        71 ~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~-~k~~~C~  112 (332)
                      .|+++|++++||.|++|++.|.....|..|+++ ++ ++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            588999999999999999999999999999999 57 8999984

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=2.4e-08  Score=63.35  Aligned_cols=42  Identities=19%  Similarity=0.452  Sum_probs=39.3

Q ss_pred             hhhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCeeee
Q 038715           71 KHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRCD  112 (332)
Q Consensus        71 ~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C~  112 (332)
                      .|+++|+++++|.|++|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            488999999999999999999999999999999 689999985

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=2.5e-08  Score=62.51  Aligned_cols=37  Identities=11%  Similarity=0.144  Sum_probs=23.2

Q ss_pred             cCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcccc
Q 038715           41 QVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKC   84 (332)
Q Consensus        41 ~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C   84 (332)
                      |.++++|.|+.|       ++.|.....|..|+++|+++++|+|
T Consensus         7 H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eoj_A            7 GTGENPYECCEC-------GKVFSRKDQLVSHQKTHSGQSGPSS   43 (44)
T ss_dssp             SSSCCSCEETTT-------TEECSSHHHHHHHHTTSSSSCSCCC
T ss_pred             cCCCcCeeCCCC-------CCccCCHHHHHHHHHHcCCCCCCCC
Confidence            335666666666       6666666666666666666666665

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=3e-08  Score=63.32  Aligned_cols=42  Identities=10%  Similarity=0.105  Sum_probs=34.6

Q ss_pred             cccCCCcceecC--CCCCCCCCCCCccCChhhHhhhhccccCCCccccccC
Q 038715           39 TTQVKKGVYVCP--KPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKC   87 (332)
Q Consensus        39 ~~~~~~~~~~C~--~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C   87 (332)
                      ++|.++++|.|.  .|       ++.|.....|..|+++|++++||+|.+|
T Consensus         5 ~~H~~~k~~~C~~~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            5 SSGTGEKPFACTWPGC-------GWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CSSCCCCCEECCSSSC-------CCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCcCCCCCeECCCCCC-------CCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            445578888887  78       8888888888888888888888888876

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=2.1e-08  Score=63.62  Aligned_cols=43  Identities=12%  Similarity=0.074  Sum_probs=38.3

Q ss_pred             CccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcccccc
Q 038715           37 RPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDK   86 (332)
Q Consensus        37 ~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~   86 (332)
                      |++.|.++++|.|+.|       ++.|.....|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVC-------GKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             SCCCCSSCCSEEETTT-------TEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             ccccCCCCCCeECccc-------ChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3444559999999999       999999999999999999999999963

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=3.1e-08  Score=61.39  Aligned_cols=38  Identities=16%  Similarity=0.177  Sum_probs=27.7

Q ss_pred             ccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcccc
Q 038715           40 TQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKC   84 (332)
Q Consensus        40 ~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C   84 (332)
                      +|.++++|.|+.|       ++.|.....|..|+++|++++||+|
T Consensus         5 ~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            5 SSGGEKPYPCEIC-------GTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSSSCCBCCSSS-------CCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             ccCCCCCEECCCC-------CCccCCHHHHHHHHHhcCCCCCCCC
Confidence            3446777777777       7777777777777777777777766

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.58  E-value=1.4e-08  Score=64.43  Aligned_cols=40  Identities=13%  Similarity=0.041  Sum_probs=22.3

Q ss_pred             cccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccc
Q 038715           39 TTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCD   85 (332)
Q Consensus        39 ~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~   85 (332)
                      +.|.++++|.|+.|       ++.|.....|..|+++|++++||+|+
T Consensus         5 ~~h~~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            5 SSGHGERGHRCSDC-------GKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCCSSS-------CCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCCcCCCCC-------CCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            34445555555555       55555555555555555555555554

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=2.1e-08  Score=63.60  Aligned_cols=43  Identities=12%  Similarity=0.170  Sum_probs=38.4

Q ss_pred             CccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcccccc
Q 038715           37 RPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDK   86 (332)
Q Consensus        37 ~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~   86 (332)
                      |+++|.++++|.|+.|       ++.|.....|..|+++|+++++|.|+.
T Consensus         3 h~~~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            3 SGSSGSGERPFKCNEC-------GKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCSCSSCCCSCCCSSS-------CCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCcCCCCCCCeECCCC-------CcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3445559999999999       999999999999999999999999963

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=3.5e-08  Score=60.79  Aligned_cols=36  Identities=28%  Similarity=0.518  Sum_probs=33.4

Q ss_pred             CCCCceecccccccccChhHHHHHHHhcCCCcccccCccccCCCcceec
Q 038715            1 MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVC   49 (332)
Q Consensus         1 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C   49 (332)
                      ++++||+|+.|++.|.....|..|+++|+             ++++|.|
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C   41 (41)
T 2ept_A            6 SGQRVYECQECGKSFRQKGSLTLHERIHT-------------GSGPSSG   41 (41)
T ss_dssp             CCCCCEECSSSCCEESSHHHHHHHGGGCC-------------CCSCSCC
T ss_pred             CCCCCeECCCCCCCcCCHHHHHHHHHHhC-------------CCCCcCC
Confidence            47899999999999999999999999998             7888887

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=3e-08  Score=62.73  Aligned_cols=38  Identities=16%  Similarity=0.204  Sum_probs=25.6

Q ss_pred             cCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccc
Q 038715           41 QVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCD   85 (332)
Q Consensus        41 ~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~   85 (332)
                      |.++++|.|+.|       ++.|.....|..|+++|++++||.|+
T Consensus         7 H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            7 GTGEKPYECNQC-------GKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             SCCCCSSEETTT-------TEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             CCCCCCeECCCC-------ChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            336666777776       67777777777777777766666664

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=2.7e-08  Score=61.62  Aligned_cols=40  Identities=10%  Similarity=0.130  Sum_probs=36.4

Q ss_pred             ccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcccc
Q 038715           38 PTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKC   84 (332)
Q Consensus        38 ~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C   84 (332)
                      .++|.++++|.|+.|       ++.|.....|..|+++|++++||.|
T Consensus         3 ~~~H~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            3 SGSSGGEKPYKCETC-------GARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCSSCSEECTTT-------CCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CcccCCCCCEeCCCc-------ChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            344558999999999       9999999999999999999999987

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.55  E-value=3.4e-08  Score=61.11  Aligned_cols=40  Identities=8%  Similarity=0.052  Sum_probs=36.4

Q ss_pred             ccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcccc
Q 038715           38 PTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKC   84 (332)
Q Consensus        38 ~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C   84 (332)
                      .++|.++++|.|+.|       ++.|.....|..|+++|++++||.|
T Consensus         3 ~~~H~~~~~~~C~~C-------~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            3 SGSSGGETPYLCGQC-------GKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CSCCCSSCCEECSSS-------CCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CccCCCCCCeECCCC-------CcccCCHHHHHHHhhhcCCCCCCCC
Confidence            344558999999999       9999999999999999999999988

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=4.1e-08  Score=61.57  Aligned_cols=41  Identities=12%  Similarity=0.111  Sum_probs=37.2

Q ss_pred             ccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccc
Q 038715           38 PTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCD   85 (332)
Q Consensus        38 ~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~   85 (332)
                      ...|.++++|.|+.|       ++.|.....|..|+++|++++||+|+
T Consensus         4 ~~~h~~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            4 GSSGAAKTTSECQEC-------GKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             SCSCSSSCCCCCTTT-------CCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCcCeECCCC-------CcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            344558999999999       99999999999999999999999984

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=3.4e-08  Score=61.90  Aligned_cols=35  Identities=11%  Similarity=0.151  Sum_probs=20.1

Q ss_pred             CCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcccc
Q 038715           43 KKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKC   84 (332)
Q Consensus        43 ~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C   84 (332)
                      ++++|.|+.|       ++.|.....|..|+++|++++||.|
T Consensus         9 ~~~~~~C~~C-------~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            9 DSKSYNCNEC-------GKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCEEETTT-------TEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CCCCeECccc-------CcccCCHHHHHHHHHHhCCCCCCCC
Confidence            5555555555       5555555555555555555555555

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=4.8e-08  Score=61.90  Aligned_cols=41  Identities=24%  Similarity=0.527  Sum_probs=38.0

Q ss_pred             hhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCeeee
Q 038715           72 HFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRCD  112 (332)
Q Consensus        72 H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C~  112 (332)
                      ++++|+++++|.|++|++.|.....|..|+++ ++++||.|+
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            46789999999999999999999999999999 589999995

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.53  E-value=5.1e-08  Score=60.88  Aligned_cols=39  Identities=15%  Similarity=0.338  Sum_probs=29.4

Q ss_pred             cCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcccccc
Q 038715           41 QVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDK   86 (332)
Q Consensus        41 ~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~   86 (332)
                      |.++++|.|+.|       ++.|.....|..|+++|++++||.|++
T Consensus         5 h~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            5 SSGNGAFFCNEC-------DCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             CSSSCCBCCSSS-------CCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             cCCCCCEECCCC-------CCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            446777788777       777888788888877787777777753

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=4.9e-08  Score=61.51  Aligned_cols=39  Identities=13%  Similarity=0.183  Sum_probs=30.9

Q ss_pred             ccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccc
Q 038715           40 TQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCD   85 (332)
Q Consensus        40 ~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~   85 (332)
                      .|.++++|.|+.|       ++.|.....|..|+++|++++||.|+
T Consensus         6 ~h~~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            6 SGTGQKPFECTHC-------GKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCSCCSEEETTT-------TEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCcCccCCCC-------CCccCChHHHHHHHHHhCCCCCCCCC
Confidence            4447788888888       88888888888888888888888875

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.51  E-value=1.2e-08  Score=74.75  Aligned_cols=45  Identities=11%  Similarity=0.212  Sum_probs=37.2

Q ss_pred             hhhhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCeeee-cC
Q 038715           70 KKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRCD-CG  114 (332)
Q Consensus        70 ~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C~-C~  114 (332)
                      ..|.++|++++||.|++|++.|.....|..|+++ ++++||.|. |.
T Consensus        14 ~~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~   60 (88)
T 1x6f_A           14 ILGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE   60 (88)
T ss_dssp             CCCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS
T ss_pred             eccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh
Confidence            3446678899999999999999999999999988 578888886 54

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.50  E-value=2.4e-08  Score=73.12  Aligned_cols=52  Identities=12%  Similarity=0.219  Sum_probs=33.5

Q ss_pred             cCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccChhhhcCchhhHHHHHH
Q 038715           41 QVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI  103 (332)
Q Consensus        41 ~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~  103 (332)
                      |.++++|.|+.|       ++.|.....|..|+++|++++||+|..|.    ....|..|+++
T Consensus        20 H~~~kpy~C~~C-------~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~~   71 (88)
T 1x6f_A           20 RLQNSTYQCKHC-------DSKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQKY   71 (88)
T ss_dssp             CCCCSCEECSSS-------CCEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCCC
T ss_pred             cCCCCCCcCCCC-------CCEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhcc
Confidence            336677777777       77777777777777777777777776543    34444444444

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=8.7e-08  Score=58.97  Aligned_cols=37  Identities=14%  Similarity=0.165  Sum_probs=29.8

Q ss_pred             cCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcccc
Q 038715           41 QVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKC   84 (332)
Q Consensus        41 ~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C   84 (332)
                      |.++++|.|+.|       ++.|.....|..|+++|++++||.|
T Consensus         5 h~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            5 SSGQRVYECQEC-------GKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CCCCCCEECSSS-------CCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             cCCCCCeECCCC-------CCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            447788888888       8888888888888888888888876

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.48  E-value=9.3e-08  Score=59.92  Aligned_cols=41  Identities=12%  Similarity=0.004  Sum_probs=36.9

Q ss_pred             CccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcccc
Q 038715           37 RPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKC   84 (332)
Q Consensus        37 ~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C   84 (332)
                      |+++|.++++|.|++|       ++.|.....|..|+++|++++||.|
T Consensus         3 H~~~H~~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            3 SGSSGSGEKPYECNEC-------GKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCSEECSSS-------CCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCcccCCCcCeECCCC-------CcccCchHHHHHHHhHhcCCCCCCC
Confidence            3445559999999999       9999999999999999999999987

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.44  E-value=3.4e-08  Score=70.04  Aligned_cols=54  Identities=22%  Similarity=0.326  Sum_probs=33.6

Q ss_pred             hHhhhhccccCCCccccccChhhhcCchhhHHHHHH-hCCCCeeee-cCCccccchhHh
Q 038715           68 GVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGTREHRCD-CGIIFSSQNLAA  124 (332)
Q Consensus        68 ~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k~~~C~-C~k~f~~~~~l~  124 (332)
                      .|..|+++|.+++++.|+.|++.| ....|..|+ . .+++|+.|+ |++.|.. ..|.
T Consensus         4 ~L~~H~~~~c~~r~~~C~~C~~~~-~~~~L~~H~-~~c~~~~~~C~~C~~~~~~-~~l~   59 (75)
T 2d9k_A            4 GSSGHEETECPLRLAVCQHCDLEL-SILKLKEHE-DYCGARTELCGNCGRNVLV-KDLK   59 (75)
T ss_dssp             CCSCCCCCCCCCCCEECSSSCCEE-CHHHHHHHH-HHHHHCEEECSSSCCEEET-TGGG
T ss_pred             HHHhhCcccCCCcccCCcccChHh-hHHHHHHHH-hHcCCCceEcccCCCcCcH-HHHH
Confidence            356666666666666666666666 366666666 4 566666666 6666553 3444

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.43  E-value=1.4e-07  Score=57.43  Aligned_cols=36  Identities=22%  Similarity=0.461  Sum_probs=32.6

Q ss_pred             CCCCceecccccccccChhHHHHHHHhcCCCcccccCccccCCCcceec
Q 038715            1 MATNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVC   49 (332)
Q Consensus         1 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C   49 (332)
                      ++++||.|+.|++.|.....|..|+++|.             ++++|.+
T Consensus         2 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~~   37 (39)
T 1njq_A            2 WPPRSYTCSFCKREFRSAQALGGHMNVHR-------------RDRARLR   37 (39)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHHTTC-------------CSCTTTT
T ss_pred             CCCCceECCCCCcccCCHHHHHHHHHHcC-------------CCcccee
Confidence            57899999999999999999999999998             7777765

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.43  E-value=1.8e-08  Score=60.62  Aligned_cols=32  Identities=16%  Similarity=0.014  Sum_probs=28.8

Q ss_pred             cCCCCceecccccccccCcccccccccCCCCccCCC
Q 038715          164 ENSLRPLSMSSVGVMVSSNLDPILTSRVSKPYLSSV  199 (332)
Q Consensus       164 h~~~k~~~C~~C~k~F~~~~~L~~H~~~~~p~~C~~  199 (332)
                      +.+++||+|+.|+++|.++++|.+|+    ||.|+.
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~----py~C~~   34 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ----AYYCSH   34 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH----HHTSTT
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC----CeECcC
Confidence            56899999999999999999999998    888875

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.38  E-value=2.2e-07  Score=63.82  Aligned_cols=38  Identities=26%  Similarity=0.354  Sum_probs=34.0

Q ss_pred             CCCCceeccc--ccccccChhHHHHHH-HhcCCCcccccCccccCCCcceecCC
Q 038715            1 MATNRYICEV--CHKGFQRDQNLQLHR-KGHNLPWKLMQRPTTQVKKGVYVCPK   51 (332)
Q Consensus         1 ~~~k~~~C~~--C~k~f~~~~~L~~H~-~~h~~~~~l~~~~~~~~~~~~~~C~~   51 (332)
                      +|+|||+|.+  |++.|.+..+|.+|+ ++|+             +++||.|..
T Consensus        23 sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHT-------------gEKP~~~~~   63 (73)
T 1x3c_A           23 SPYRPYRCVHQGCFAAFTIQQNLILHYQAVHK-------------SDLPAFSAE   63 (73)
T ss_dssp             CSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSS-------------SCCCCCCCS
T ss_pred             cCCCCeECCCCCcChhHcCHHHHHHHhhhhCC-------------CCCCccccc
Confidence            4799999975  999999999999997 6898             899998865

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.32  E-value=1.8e-07  Score=66.20  Aligned_cols=60  Identities=22%  Similarity=0.400  Sum_probs=52.0

Q ss_pred             ccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccChhhhcCchhhHHHHHHh
Q 038715           35 MQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKIC  104 (332)
Q Consensus        35 ~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~h  104 (332)
                      ..|...+.+++++.|+.|       ++.|. ...|..|+ .|.+++|+.|+.|++.|. ...|..|+++|
T Consensus         6 ~~H~~~~c~~r~~~C~~C-------~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c   65 (75)
T 2d9k_A            6 SGHEETECPLRLAVCQHC-------DLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVC   65 (75)
T ss_dssp             SCCCCCCCCCCCEECSSS-------CCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHB
T ss_pred             HhhCcccCCCcccCCccc-------ChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHc
Confidence            344444559999999999       99994 89999999 899999999999999887 58999999984

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.26  E-value=2.8e-07  Score=55.15  Aligned_cols=30  Identities=20%  Similarity=0.454  Sum_probs=17.4

Q ss_pred             ccccCCCccccccChhhhcCchhhHHHHHH
Q 038715           74 CRKHGEKKWKCDKCSKCYAVQSDWKAHTKI  103 (332)
Q Consensus        74 ~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~  103 (332)
                      ++|++++||.|+.|++.|.....|..|+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKT   31 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHH
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHH
Confidence            345555556665566666555556655555

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.26  E-value=2.9e-07  Score=55.06  Aligned_cols=32  Identities=19%  Similarity=0.433  Sum_probs=21.7

Q ss_pred             hhccccCCCccccccChhhhcCchhhHHHHHH
Q 038715           72 HFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI  103 (332)
Q Consensus        72 H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~  103 (332)
                      |+++|++++||+|+.|++.|.....|..|+++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~   33 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHH
Confidence            56666666667777777777666666666665

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.23  E-value=5.2e-07  Score=52.68  Aligned_cols=26  Identities=31%  Similarity=0.627  Sum_probs=25.1

Q ss_pred             CceecccccccccChhHHHHHHHhcC
Q 038715            4 NRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         4 k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      +||.|+.|++.|.....|..|+++|+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~   26 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHE   26 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHT
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhC
Confidence            68999999999999999999999998

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.23  E-value=8.6e-07  Score=52.08  Aligned_cols=29  Identities=24%  Similarity=0.560  Sum_probs=27.5

Q ss_pred             CCCCceecccccccccChhHHHHHHHhcC
Q 038715            1 MATNRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         1 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      +++++|.|+.|++.|.+...|..|++.|+
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   31 (35)
T 2elx_A            3 SGSSGYVCALCLKKFVSSIRLRSHIREVH   31 (35)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             CCCCCeECCCCcchhCCHHHHHHHHHHHc
Confidence            47899999999999999999999999997

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.21  E-value=7.8e-07  Score=54.03  Aligned_cols=29  Identities=24%  Similarity=0.292  Sum_probs=27.2

Q ss_pred             CCCCceeccc--ccccccChhHHHHHHHhcC
Q 038715            1 MATNRYICEV--CHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         1 ~~~k~~~C~~--C~k~f~~~~~L~~H~~~h~   29 (332)
                      ++++||+|+.  |++.|.++..|.+|+++|+
T Consensus         5 ~gekp~~C~~~~C~k~F~~~~~L~~H~r~Ht   35 (38)
T 2eln_A            5 SSGILLKCPTDGCDYSTPDKYKLQAHLKVHT   35 (38)
T ss_dssp             SCCCCEECSSSSCCCEESCHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            4789999986  9999999999999999997

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.21  E-value=9.5e-07  Score=51.99  Aligned_cols=29  Identities=24%  Similarity=0.566  Sum_probs=27.5

Q ss_pred             CCCCceecccccccccChhHHHHHHHhcC
Q 038715            1 MATNRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         1 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      ++++||.|+.|++.|.....|..|+++|+
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   31 (35)
T 1srk_A            3 SGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             SCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCcCeeCCCCCcccCCHHHHHHHHHHcC
Confidence            47899999999999999999999999997

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.21  E-value=6.9e-07  Score=54.15  Aligned_cols=35  Identities=11%  Similarity=0.177  Sum_probs=29.5

Q ss_pred             CCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcccc
Q 038715           43 KKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKC   84 (332)
Q Consensus        43 ~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C   84 (332)
                      ++++|.|+.|       ++.|.....|..|+++|++++||.+
T Consensus         3 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            3 PPRSYTCSFC-------KREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             CSSSEECTTT-------CCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCceECCCC-------CcccCCHHHHHHHHHHcCCCcccee
Confidence            6778888888       8888888888888888888888765

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.10  E-value=1.9e-06  Score=47.44  Aligned_cols=27  Identities=15%  Similarity=0.418  Sum_probs=25.3

Q ss_pred             CCceecccccccccChhHHHHHHHhcC
Q 038715            3 TNRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         3 ~k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      ++||.|+.|++.|.....|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            589999999999999999999999884

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.10  E-value=1.6e-06  Score=59.50  Aligned_cols=35  Identities=11%  Similarity=0.044  Sum_probs=19.9

Q ss_pred             CCcceecCC--CCCCCCCCCCccCChhhHhhhh-ccccCCCcccc
Q 038715           43 KKGVYVCPK--PNCVHHHPSRALGDLTGVKKHF-CRKHGEKKWKC   84 (332)
Q Consensus        43 ~~~~~~C~~--C~C~~~~~~~~f~~~~~L~~H~-~~h~~ek~~~C   84 (332)
                      +++||+|++  |       ++.|...+.|..|+ ++|++++||.|
T Consensus        24 GEKPYkC~~~~C-------gKaFsr~s~L~~H~rriHTgEKP~~~   61 (73)
T 1x3c_A           24 PYRPYRCVHQGC-------FAAFTIQQNLILHYQAVHKSDLPAFS   61 (73)
T ss_dssp             SSCSCBCCSTTC-------CCBCSSHHHHHHHHHHHSSSCCCCCC
T ss_pred             CCCCeECCCCCc-------ChhHcCHHHHHHHhhhhCCCCCCccc
Confidence            555566543  4       55666656666664 45555555555

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.09  E-value=1.4e-06  Score=48.08  Aligned_cols=27  Identities=30%  Similarity=0.694  Sum_probs=25.1

Q ss_pred             CCceecccccccccChhHHHHHHHhcC
Q 038715            3 TNRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         3 ~k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      ++||+|+.|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            589999999999999999999999873

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.07  E-value=2.7e-06  Score=50.31  Aligned_cols=29  Identities=21%  Similarity=0.509  Sum_probs=27.3

Q ss_pred             CCCCceecccccccccChhHHHHHHHhcC
Q 038715            1 MATNRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         1 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      ++++||+|+.|++.|.....|..|+++|+
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elq_A            5 SSGKPFKCSLCEYATRSKSNLKAHMNRHS   33 (36)
T ss_dssp             CCCCSEECSSSSCEESCHHHHHHHHHHSS
T ss_pred             CCCCCccCCCCCchhCCHHHHHHHHHHhc
Confidence            46899999999999999999999999997

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.06  E-value=2.5e-06  Score=50.49  Aligned_cols=29  Identities=21%  Similarity=0.458  Sum_probs=27.2

Q ss_pred             CCCCceecccccccccChhHHHHHHHhcC
Q 038715            1 MATNRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         1 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      ++++||+|+.|++.|.....|..|+++|+
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elv_A            5 SSGLLYDCHICERKFKNELDRDRHMLVHG   33 (36)
T ss_dssp             CCCCCEECSSSCCEESSHHHHHHHHTTTS
T ss_pred             CCCCCeECCCCCCccCCHHHHHHHHHHhc
Confidence            46899999999999999999999999996

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.06  E-value=2.6e-06  Score=50.30  Aligned_cols=29  Identities=24%  Similarity=0.466  Sum_probs=27.3

Q ss_pred             CCCCceecccccccccChhHHHHHHHhcC
Q 038715            1 MATNRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         1 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      ++++||+|+.|++.|.....|..|+++|+
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elt_A            5 SSGKPYKCPQCSYASAIKANLNVHLRKHT   33 (36)
T ss_dssp             CCCCSEECSSSSCEESSHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCcccCCHHHHHHHHHHcc
Confidence            47899999999999999999999999997

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.04  E-value=2e-06  Score=51.20  Aligned_cols=35  Identities=20%  Similarity=0.341  Sum_probs=31.8

Q ss_pred             ccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCc
Q 038715           40 TQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKK   81 (332)
Q Consensus        40 ~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~   81 (332)
                      +|.++++|.|+.|       ++.|.....|..|+++|++++|
T Consensus         3 ~h~~~k~~~C~~C-------~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            3 SGSSGRSYSCPVC-------EKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCEETTT-------TEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCcCCCCC-------CCccCCHHHHHHHHHHHcCCCC
Confidence            3458999999999       9999999999999999999875

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.03  E-value=2e-06  Score=51.60  Aligned_cols=29  Identities=21%  Similarity=0.662  Sum_probs=27.2

Q ss_pred             CCCCceecc--cccccccChhHHHHHHHhcC
Q 038715            1 MATNRYICE--VCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         1 ~~~k~~~C~--~C~k~f~~~~~L~~H~~~h~   29 (332)
                      ++++||.|.  .|++.|.+...|..|+++|+
T Consensus         2 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~   32 (38)
T 1bhi_A            2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCcceECCCCCCCcccCCHHHHHHHHHHhC
Confidence            578999999  59999999999999999997

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.02  E-value=2.2e-06  Score=49.88  Aligned_cols=32  Identities=13%  Similarity=0.164  Sum_probs=23.0

Q ss_pred             cceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccc
Q 038715           45 GVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWK   83 (332)
Q Consensus        45 ~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~   83 (332)
                      ++|.|+.|       ++.|.....|..|+++|+++++|.
T Consensus         1 kp~~C~~C-------~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPEC-------PKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSS-------CCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCC-------CchhCCHHHHHHHHHHhCCCCCCC
Confidence            35677777       777777777777777777777664

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.02  E-value=3.1e-06  Score=49.96  Aligned_cols=29  Identities=24%  Similarity=0.555  Sum_probs=27.3

Q ss_pred             CCCCceecccccccccChhHHHHHHHhcC
Q 038715            1 MATNRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         1 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      +++++|.|+.|++.|.....|..|+++|+
T Consensus         5 ~~~~~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elr_A            5 SSGKTHLCDMCGKKFKSKGTLKSHKLLHT   33 (36)
T ss_dssp             CCCSSCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCCCCeecCcCCCCcCchHHHHHHHHHhc
Confidence            46899999999999999999999999997

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.01  E-value=3.5e-06  Score=49.42  Aligned_cols=32  Identities=16%  Similarity=0.178  Sum_probs=22.1

Q ss_pred             CCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCc
Q 038715           43 KKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKK   81 (332)
Q Consensus        43 ~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~   81 (332)
                      ++++|.|+.|       ++.|.....|..|+++|++++|
T Consensus         4 ~~k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            4 GKRPFVCRIC-------LSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CCSCEECSSS-------CCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCcCeeCCCC-------CcccCCHHHHHHHHHHcCCCCC
Confidence            5667777777       7777777777777777766653

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.01  E-value=4.3e-06  Score=49.72  Aligned_cols=35  Identities=14%  Similarity=0.144  Sum_probs=30.8

Q ss_pred             ccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCC
Q 038715           38 PTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGE   79 (332)
Q Consensus        38 ~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~e   79 (332)
                      .+.|.++++|.|+.|       ++.|.....|..|+++|+++
T Consensus         3 ~~~h~~~k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            3 TRGSTGIKPFQCPDC-------DRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             SSTTCCSSSBCCTTT-------CCCBSSHHHHHHHHGGGTCC
T ss_pred             CCcCCCCCCccCCCC-------CcccCcHHHHHHHHHHhccC
Confidence            344558999999999       99999999999999999874

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.00  E-value=3.9e-06  Score=49.62  Aligned_cols=29  Identities=31%  Similarity=0.575  Sum_probs=27.1

Q ss_pred             CCCCceecccccccccChhHHHHHHHhcC
Q 038715            1 MATNRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         1 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      ++++||.|+.|++.|.....|..|+++|+
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2els_A            5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHT   33 (36)
T ss_dssp             SCCCCEECTTTCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCEECCCCCceeCCHHHHHHHHHHhC
Confidence            36799999999999999999999999997

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.99  E-value=2.6e-06  Score=50.99  Aligned_cols=28  Identities=21%  Similarity=0.504  Sum_probs=25.1

Q ss_pred             CCCCceecccccccccChhHHHHHHHhc
Q 038715            1 MATNRYICEVCHKGFQRDQNLQLHRKGH   28 (332)
Q Consensus         1 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h   28 (332)
                      ++++||+|+.|++.|.+..+|.+|+..+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~py~   31 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQAYY   31 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHHHHT
T ss_pred             CCccCeECCCCCCccCCHhHccCcCCeE
Confidence            4799999999999999999999998433

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.99  E-value=1.8e-06  Score=51.70  Aligned_cols=31  Identities=13%  Similarity=0.253  Sum_probs=21.3

Q ss_pred             ccccCCCccccccChhhhcCchhhHHH-HHHh
Q 038715           74 CRKHGEKKWKCDKCSKCYAVQSDWKAH-TKIC  104 (332)
Q Consensus        74 ~~h~~ek~~~C~~C~~~f~~~~~L~~H-~~~h  104 (332)
                      ++|++++||+|+.|++.|..+..|..| ++.|
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H   33 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKH   33 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHT
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHc
Confidence            456677777777777777777777777 5554

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.98  E-value=3.3e-06  Score=49.43  Aligned_cols=31  Identities=19%  Similarity=0.323  Sum_probs=18.6

Q ss_pred             CCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCC
Q 038715           43 KKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEK   80 (332)
Q Consensus        43 ~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek   80 (332)
                      ++++|.|+.|       ++.|.....|..|+++|++++
T Consensus         4 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            4 GSSGYVCALC-------LKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCSEECSSS-------CCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCeECCCC-------cchhCCHHHHHHHHHHHcCCC
Confidence            4556666666       666666666666666665554

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.97  E-value=3.8e-06  Score=46.47  Aligned_cols=27  Identities=30%  Similarity=0.653  Sum_probs=25.4

Q ss_pred             CCceecccccccccChhHHHHHHHhcC
Q 038715            3 TNRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         3 ~k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      ++||.|+.|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcC
Confidence            589999999999999999999999885

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.96  E-value=4.6e-06  Score=49.79  Aligned_cols=29  Identities=24%  Similarity=0.454  Sum_probs=27.2

Q ss_pred             CCCCceecccccccccChhHHHHH-HHhcC
Q 038715            1 MATNRYICEVCHKGFQRDQNLQLH-RKGHN   29 (332)
Q Consensus         1 ~~~k~~~C~~C~k~f~~~~~L~~H-~~~h~   29 (332)
                      ++++||+|+.|++.|.....|..| ++.|+
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~   34 (37)
T 2elm_A            5 SSGHLYYCSQCHYSSITKNCLKRHVIQKHS   34 (37)
T ss_dssp             SSSCEEECSSSSCEEECHHHHHHHHHHHTC
T ss_pred             CCCcCeECCCCCcccCCHHHHHHHHHHHcc
Confidence            478999999999999999999999 89986

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.95  E-value=1.4e-06  Score=50.34  Aligned_cols=28  Identities=0%  Similarity=-0.184  Sum_probs=21.2

Q ss_pred             CceecccccccccCcccccccccC---CCCc
Q 038715          168 RPLSMSSVGVMVSSNLDPILTSRV---SKPY  195 (332)
Q Consensus       168 k~~~C~~C~k~F~~~~~L~~H~~~---~~p~  195 (332)
                      +||+|+.|++.|.+.++|..|+++   ++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            477888888888888888888776   5555

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.95  E-value=3.7e-06  Score=50.07  Aligned_cols=29  Identities=21%  Similarity=0.359  Sum_probs=18.6

Q ss_pred             cccCCCccccccChhhhcCc-hhhHHHHHH
Q 038715           75 RKHGEKKWKCDKCSKCYAVQ-SDWKAHTKI  103 (332)
Q Consensus        75 ~h~~ek~~~C~~C~~~f~~~-~~L~~H~~~  103 (332)
                      +|++++||.|+.|++.|... +.|..|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~   32 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWA   32 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHH
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHh
Confidence            45566666666666666666 666666665

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.94  E-value=6.1e-06  Score=46.15  Aligned_cols=27  Identities=22%  Similarity=0.561  Sum_probs=25.7

Q ss_pred             CCceecccccccccChhHHHHHHHhcC
Q 038715            3 TNRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         3 ~k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      ++||.|..|++.|.....|..|++.|.
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~   27 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHD   27 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhc
Confidence            589999999999999999999999996

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.93  E-value=5.5e-06  Score=52.82  Aligned_cols=29  Identities=24%  Similarity=0.588  Sum_probs=27.5

Q ss_pred             CCCCceecccccccccChhHHHHHHH-hcC
Q 038715            1 MATNRYICEVCHKGFQRDQNLQLHRK-GHN   29 (332)
Q Consensus         1 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~h~   29 (332)
                      ++++||.|..|++.|....+|..|++ +|.
T Consensus         3 t~~kp~~C~~C~k~F~~~~~L~~H~~~~H~   32 (48)
T 3iuf_A            3 DRDKPYACDICGKRYKNRPGLSYHYAHSHL   32 (48)
T ss_dssp             TTTSCEECTTTCCEESSHHHHHHHHHHSSC
T ss_pred             CCCcCEECCCcCcccCCHHHHHHHhhhhcC
Confidence            57899999999999999999999999 897

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.87  E-value=6.8e-06  Score=45.71  Aligned_cols=26  Identities=35%  Similarity=0.675  Sum_probs=24.8

Q ss_pred             CceecccccccccChhHHHHHHHhcC
Q 038715            4 NRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         4 k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      +||.|+.|++.|.....|..|+++|.
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHE   26 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGG
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhc
Confidence            68999999999999999999999996

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.84  E-value=9.2e-06  Score=47.92  Aligned_cols=32  Identities=13%  Similarity=0.147  Sum_probs=22.8

Q ss_pred             cCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCC
Q 038715           41 QVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGE   79 (332)
Q Consensus        41 ~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~e   79 (332)
                      |.++++|.|+.|       ++.|.....|..|+++|+++
T Consensus         4 h~~~k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            4 GSSGLLYDCHIC-------ERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             SCCCCCEECSSS-------CCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCeECCCC-------CCccCCHHHHHHHHHHhcCC
Confidence            336677777777       77777777777777777665

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.04  E-value=2.4e-06  Score=46.55  Aligned_cols=25  Identities=36%  Similarity=0.751  Sum_probs=23.8

Q ss_pred             CceecccccccccChhHHHHHHHhc
Q 038715            4 NRYICEVCHKGFQRDQNLQLHRKGH   28 (332)
Q Consensus         4 k~~~C~~C~k~f~~~~~L~~H~~~h   28 (332)
                      +||.|+.|++.|.....|..|+++|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            6899999999999999999999887

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.83  E-value=7.4e-06  Score=49.00  Aligned_cols=33  Identities=9%  Similarity=0.189  Sum_probs=21.4

Q ss_pred             CCcceecC--CCCCCCCCCCCccCChhhHhhhhccccCCCcc
Q 038715           43 KKGVYVCP--KPNCVHHHPSRALGDLTGVKKHFCRKHGEKKW   82 (332)
Q Consensus        43 ~~~~~~C~--~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~   82 (332)
                      ++++|.|+  .|       ++.|.....|..|+++|+++++|
T Consensus         3 ~~k~~~C~~~~C-------~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            3 DDKPFLCTAPGC-------GQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             TCCCEECCCTTT-------CCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCcceECCCCCC-------CcccCCHHHHHHHHHHhCCCCCC
Confidence            55666666  36       66666666666666666666654

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.83  E-value=8.7e-06  Score=49.28  Aligned_cols=30  Identities=13%  Similarity=0.128  Sum_probs=19.3

Q ss_pred             CCcceecCC--CCCCCCCCCCccCChhhHhhhhccccCC
Q 038715           43 KKGVYVCPK--PNCVHHHPSRALGDLTGVKKHFCRKHGE   79 (332)
Q Consensus        43 ~~~~~~C~~--C~C~~~~~~~~f~~~~~L~~H~~~h~~e   79 (332)
                      +++||.|++  |       ++.|...+.|..|+++|+++
T Consensus         6 gekp~~C~~~~C-------~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            6 SGILLKCPTDGC-------DYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CCCCEECSSSSC-------CCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCC-------CCccCCHHHHHHHHHhcCCC
Confidence            566666664  5       66666666666666666654

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.82  E-value=5.7e-06  Score=52.40  Aligned_cols=36  Identities=14%  Similarity=0.450  Sum_probs=28.8

Q ss_pred             HhhhhccccCCCccccc--cChhhhcCchhhHHHHHHh
Q 038715           69 VKKHFCRKHGEKKWKCD--KCSKCYAVQSDWKAHTKIC  104 (332)
Q Consensus        69 L~~H~~~h~~ek~~~C~--~C~~~f~~~~~L~~H~~~h  104 (332)
                      +..|...|++++||.|+  .|++.|...+.|..|+++|
T Consensus         6 ~~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H   43 (47)
T 1ncs_A            6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTH   43 (47)
T ss_dssp             SGGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHH
T ss_pred             HHHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHc
Confidence            44556678888888885  6888888888888888884

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.82  E-value=9.8e-06  Score=44.98  Aligned_cols=26  Identities=35%  Similarity=0.943  Sum_probs=24.7

Q ss_pred             CceecccccccccChhHHHHHHHhcC
Q 038715            4 NRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         4 k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      +||.|+.|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhc
Confidence            58999999999999999999999996

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.81  E-value=2.6e-06  Score=49.13  Aligned_cols=31  Identities=13%  Similarity=0.167  Sum_probs=26.8

Q ss_pred             cceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcc
Q 038715           45 GVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKW   82 (332)
Q Consensus        45 ~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~   82 (332)
                      ++|.|+.|       ++.|...+.|..|+++|++++||
T Consensus         1 kp~~C~~C-------~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPAC-------PKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSS-------CTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCC-------CcccCCHHHHHHHHHHHccCCCC
Confidence            46889888       89999999999999999988876

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.79  E-value=1e-05  Score=48.21  Aligned_cols=29  Identities=24%  Similarity=0.465  Sum_probs=26.8

Q ss_pred             CCCCceecc--cccccccChhHHHHHHHhcC
Q 038715            1 MATNRYICE--VCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         1 ~~~k~~~C~--~C~k~f~~~~~L~~H~~~h~   29 (332)
                      ++++||.|.  .|++.|.....|..|+++|+
T Consensus         4 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~   34 (37)
T 1va1_A            4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHT   34 (37)
T ss_dssp             SSCCCEECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            478999998  49999999999999999996

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.78  E-value=1.2e-05  Score=47.46  Aligned_cols=30  Identities=20%  Similarity=0.257  Sum_probs=18.1

Q ss_pred             CCcceecCCCCCCCCCCCCccCChhhHhhhhccccCC
Q 038715           43 KKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGE   79 (332)
Q Consensus        43 ~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~e   79 (332)
                      ++++|.|+.|       ++.|.....|..|+++|+++
T Consensus         6 ~~k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            6 SGKPFKCSLC-------EYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             CCCSEECSSS-------SCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCccCCCC-------CchhCCHHHHHHHHHHhccC
Confidence            5556666666       66666666666666665554

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.78  E-value=3.6e-06  Score=53.39  Aligned_cols=34  Identities=6%  Similarity=-0.079  Sum_probs=29.0

Q ss_pred             cccccccCCCCceecc--cccccccCcccccccccC
Q 038715          158 ISRDNIENSLRPLSMS--SVGVMVSSNLDPILTSRV  191 (332)
Q Consensus       158 ~~h~~~h~~~k~~~C~--~C~k~F~~~~~L~~H~~~  191 (332)
                      +.|...|++++||+|+  .|++.|.+.++|..|+++
T Consensus         7 ~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~   42 (47)
T 1ncs_A            7 IDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQT   42 (47)
T ss_dssp             GGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHH
T ss_pred             HHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHH
Confidence            3466779999999995  799999999999999875

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.78  E-value=1.4e-05  Score=45.62  Aligned_cols=27  Identities=37%  Similarity=0.822  Sum_probs=25.6

Q ss_pred             CCceecc--cccccccChhHHHHHHHhcC
Q 038715            3 TNRYICE--VCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         3 ~k~~~C~--~C~k~f~~~~~L~~H~~~h~   29 (332)
                      ++||.|.  .|++.|.....|..|+++|+
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~   29 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHcc
Confidence            5899999  89999999999999999997

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.77  E-value=1.4e-05  Score=54.75  Aligned_cols=28  Identities=25%  Similarity=0.491  Sum_probs=27.0

Q ss_pred             CCCceecccccccccChhHHHHHHHhcC
Q 038715            2 ATNRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         2 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      +++||+|..|++.|.+...|..|+++|+
T Consensus        10 ~ekpy~C~~CgK~F~~~s~L~~H~r~Ht   37 (66)
T 2epp_A           10 EAGILPCGLCGKVFTDANRLRQHEAQHG   37 (66)
T ss_dssp             CCCCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             CccCcCCCCCCCccCCHHHHHhhhhhhC
Confidence            5899999999999999999999999997

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.77  E-value=1.1e-05  Score=47.42  Aligned_cols=30  Identities=27%  Similarity=0.400  Sum_probs=16.6

Q ss_pred             CCcceecCCCCCCCCCCCCccCChhhHhhhhccccCC
Q 038715           43 KKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGE   79 (332)
Q Consensus        43 ~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~e   79 (332)
                      ++++|.|+.|       ++.|.....|..|+++|+++
T Consensus         6 ~~k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            6 SGKPYKCPQC-------SYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CCCSEECSSS-------SCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCC-------CcccCCHHHHHHHHHHccCC
Confidence            4555555555       55555555555555555544

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.75  E-value=1.3e-05  Score=44.75  Aligned_cols=26  Identities=27%  Similarity=0.502  Sum_probs=24.7

Q ss_pred             CceecccccccccChhHHHHHHHhcC
Q 038715            4 NRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         4 k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      +||.|+.|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~   26 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHc
Confidence            58999999999999999999999987

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.74  E-value=1.6e-05  Score=46.75  Aligned_cols=30  Identities=10%  Similarity=0.126  Sum_probs=18.9

Q ss_pred             CCcceecCCCCCCCCCCCCccCChhhHhhhhccccCC
Q 038715           43 KKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGE   79 (332)
Q Consensus        43 ~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~e   79 (332)
                      ++++|.|+.|       ++.|.....|..|+++|+++
T Consensus         6 ~~~~~~C~~C-------~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            6 SGKTHLCDMC-------GKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCSSCBCTTT-------CCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCeecCcC-------CCCcCchHHHHHHHHHhcCC
Confidence            5566666666       66666666666666666554

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.74  E-value=1.1e-05  Score=47.95  Aligned_cols=34  Identities=15%  Similarity=0.223  Sum_probs=30.3

Q ss_pred             ccCCCcceecCCCCCCCCCCCCccCCh-hhHhhhhccccCCC
Q 038715           40 TQVKKGVYVCPKPNCVHHHPSRALGDL-TGVKKHFCRKHGEK   80 (332)
Q Consensus        40 ~~~~~~~~~C~~C~C~~~~~~~~f~~~-~~L~~H~~~h~~ek   80 (332)
                      +|.++++|.|+.|       ++.|... ..|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C-------~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            3 SGSSGRAMKCPYC-------DFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             SCCCCCCEECSSS-------SCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCeECCCC-------ChhhccCHHHHHHHHHhcCCCC
Confidence            3458899999999       9999999 99999999998864

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.92  E-value=4.3e-06  Score=45.46  Aligned_cols=24  Identities=13%  Similarity=0.073  Sum_probs=18.2

Q ss_pred             CceecccccccccCcccccccccC
Q 038715          168 RPLSMSSVGVMVSSNLDPILTSRV  191 (332)
Q Consensus       168 k~~~C~~C~k~F~~~~~L~~H~~~  191 (332)
                      +||+|+.|++.|.+...|..|+++
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            477788888888888888877764

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.73  E-value=1.3e-05  Score=44.41  Aligned_cols=26  Identities=31%  Similarity=0.539  Sum_probs=24.7

Q ss_pred             CceecccccccccChhHHHHHHHhcC
Q 038715            4 NRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         4 k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      +||.|+.|++.|.....|..|+++|.
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHS   26 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHH
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhc
Confidence            58999999999999999999999986

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.91  E-value=4.4e-06  Score=46.89  Aligned_cols=27  Identities=30%  Similarity=0.607  Sum_probs=25.5

Q ss_pred             CCceecccccccccChhHHHHHHHhcC
Q 038715            3 TNRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         3 ~k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      ++||.|+.|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHT   27 (30)
Confidence            579999999999999999999999986

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.71  E-value=1.7e-05  Score=54.35  Aligned_cols=29  Identities=14%  Similarity=0.290  Sum_probs=15.4

Q ss_pred             ccCCCccccccChhhhcCchhhHHHHHHh
Q 038715           76 KHGEKKWKCDKCSKCYAVQSDWKAHTKIC  104 (332)
Q Consensus        76 h~~ek~~~C~~C~~~f~~~~~L~~H~~~h  104 (332)
                      +.+++||+|.+|++.|.....|..|+++|
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~H   36 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQH   36 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhh
Confidence            44455555555555555555555555553

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.88  E-value=5.1e-06  Score=46.36  Aligned_cols=26  Identities=27%  Similarity=0.576  Sum_probs=24.7

Q ss_pred             CceecccccccccChhHHHHHHHhcC
Q 038715            4 NRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         4 k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      +||.|+.|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHT   26 (29)
Confidence            58999999999999999999999986

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.69  E-value=2e-05  Score=44.65  Aligned_cols=26  Identities=35%  Similarity=0.832  Sum_probs=24.6

Q ss_pred             Cceecc--cccccccChhHHHHHHHhcC
Q 038715            4 NRYICE--VCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         4 k~~~C~--~C~k~f~~~~~L~~H~~~h~   29 (332)
                      +||.|+  .|++.|.....|..|+++|+
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~   28 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhc
Confidence            689998  99999999999999999997

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.69  E-value=1.2e-05  Score=44.41  Aligned_cols=26  Identities=35%  Similarity=0.501  Sum_probs=24.6

Q ss_pred             CceecccccccccChhHHHHHHHhcC
Q 038715            4 NRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         4 k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      +||.|+.|++.|.....|..|+++|.
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHI   26 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHH
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhc
Confidence            68999999999999999999999986

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.68  E-value=1.9e-05  Score=46.46  Aligned_cols=30  Identities=10%  Similarity=0.231  Sum_probs=19.1

Q ss_pred             CCcceecCCCCCCCCCCCCccCChhhHhhhhccccCC
Q 038715           43 KKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGE   79 (332)
Q Consensus        43 ~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~e   79 (332)
                      .+++|.|+.|       ++.|.....|..|+++|+++
T Consensus         6 ~~k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            6 SGKIFTCEYC-------NKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             CCCCEECTTT-------CCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCEECCCC-------CceeCCHHHHHHHHHHhCCC
Confidence            5566666666       66666666666666666554

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.68  E-value=2e-05  Score=42.91  Aligned_cols=25  Identities=28%  Similarity=0.732  Sum_probs=23.1

Q ss_pred             ceecccccccccChhHHHHHHHhcC
Q 038715            5 RYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         5 ~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      ||+|+.|++.|.....|..|+++|+
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcC
Confidence            6899999999999999999999986

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.58  E-value=3e-05  Score=43.34  Aligned_cols=26  Identities=35%  Similarity=0.742  Sum_probs=24.2

Q ss_pred             CceecccccccccChhHHHHH-HHhcC
Q 038715            4 NRYICEVCHKGFQRDQNLQLH-RKGHN   29 (332)
Q Consensus         4 k~~~C~~C~k~f~~~~~L~~H-~~~h~   29 (332)
                      +||.|+.|++.|.+...|..| +++|.
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~   27 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHS   27 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHcc
Confidence            589999999999999999999 78886

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.57  E-value=3.2e-05  Score=49.15  Aligned_cols=31  Identities=16%  Similarity=0.400  Sum_probs=18.7

Q ss_pred             CCcceecCCCCCCCCCCCCccCChhhHhhhhc-cccCCC
Q 038715           43 KKGVYVCPKPNCVHHHPSRALGDLTGVKKHFC-RKHGEK   80 (332)
Q Consensus        43 ~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~-~h~~ek   80 (332)
                      ++++|.|.+|       ++.|.....|..|++ +|+++.
T Consensus         4 ~~kp~~C~~C-------~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            4 RDKPYACDIC-------GKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             TTSCEECTTT-------CCEESSHHHHHHHHHHSSCC--
T ss_pred             CCcCEECCCc-------CcccCCHHHHHHHhhhhcCCCC
Confidence            5666666666       666666666666666 666543

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.53  E-value=4.5e-05  Score=42.38  Aligned_cols=28  Identities=21%  Similarity=0.357  Sum_probs=19.4

Q ss_pred             cceecCCCCCCCCCCCCccCChhhHhhhhccccCC
Q 038715           45 GVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGE   79 (332)
Q Consensus        45 ~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~e   79 (332)
                      ++|.|+.|       ++.|.....|..|+++|+++
T Consensus         2 k~~~C~~C-------~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            2 KPYQCDYC-------GRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCEECTTT-------CCEESCHHHHHHHHHTTCCC
T ss_pred             cCccCCCC-------CcccCCHHHHHHHHHHhccC
Confidence            46677777       77777777777777776654

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.51  E-value=4.4e-05  Score=42.22  Aligned_cols=27  Identities=11%  Similarity=0.293  Sum_probs=18.6

Q ss_pred             ceecCCCCCCCCCCCCccCChhhHhhhhccccCC
Q 038715           46 VYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGE   79 (332)
Q Consensus        46 ~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~e   79 (332)
                      +|.|+.|       ++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C-------~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            2 KFACPEC-------PKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CEECSSS-------SCEESCSHHHHHHHTGGGSC
T ss_pred             CccCCCC-------CchhCCHHHHHHHHHHhcCC
Confidence            5667776       77777777777777776654

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.50  E-value=4.3e-05  Score=45.39  Aligned_cols=30  Identities=23%  Similarity=0.421  Sum_probs=18.5

Q ss_pred             CCcceecCC--CCCCCCCCCCccCChhhHhhhhccccCC
Q 038715           43 KKGVYVCPK--PNCVHHHPSRALGDLTGVKKHFCRKHGE   79 (332)
Q Consensus        43 ~~~~~~C~~--C~C~~~~~~~~f~~~~~L~~H~~~h~~e   79 (332)
                      ++++|.|++  |       ++.|...+.|..|+++|+++
T Consensus         5 ~~k~~~C~~~~C-------~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            5 KKKQHICHIQGC-------GKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SCCCEECCSTTC-------CCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCC-------CCccCCHHHHHHHHHhcCCC
Confidence            556666653  5       66666666666666666554

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.48  E-value=5.6e-05  Score=41.72  Aligned_cols=26  Identities=31%  Similarity=0.710  Sum_probs=24.5

Q ss_pred             Cceecc--cccccccChhHHHHHHHhcC
Q 038715            4 NRYICE--VCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         4 k~~~C~--~C~k~f~~~~~L~~H~~~h~   29 (332)
                      ++|.|.  .|++.|.....|..|+++|+
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            589999  99999999999999999985

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.46  E-value=7.4e-05  Score=42.47  Aligned_cols=28  Identities=14%  Similarity=0.189  Sum_probs=18.8

Q ss_pred             cceecC--CCCCCCCCCCCccCChhhHhhhhccccCC
Q 038715           45 GVYVCP--KPNCVHHHPSRALGDLTGVKKHFCRKHGE   79 (332)
Q Consensus        45 ~~~~C~--~C~C~~~~~~~~f~~~~~L~~H~~~h~~e   79 (332)
                      ++|.|+  .|       ++.|.....|..|+++|+++
T Consensus         2 k~~~C~~~~C-------~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            2 RPYSCDHPGC-------DKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CSBCCCCTTC-------CCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCcCcCCCC-------CCccCCHHHHHHHHHHccCC
Confidence            456666  56       67777777777777776655

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.46  E-value=5.7e-05  Score=41.66  Aligned_cols=27  Identities=26%  Similarity=0.520  Sum_probs=17.2

Q ss_pred             ceecCCCCCCCCCCCCccCChhhHhhhhccccCC
Q 038715           46 VYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGE   79 (332)
Q Consensus        46 ~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~e   79 (332)
                      +|.|+.|       ++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C-------~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            2 SFVCEVC-------TRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCTTT-------CCBCSSHHHHHHHHHHHSCC
T ss_pred             CeECCCC-------CcccCCHHHHHHHHHHhcCC
Confidence            4666666       66666666666666666554

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.43  E-value=7.9e-05  Score=42.06  Aligned_cols=29  Identities=17%  Similarity=0.352  Sum_probs=21.6

Q ss_pred             cceecC--CCCCCCCCCCCccCChhhHhhhhccccCCC
Q 038715           45 GVYVCP--KPNCVHHHPSRALGDLTGVKKHFCRKHGEK   80 (332)
Q Consensus        45 ~~~~C~--~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek   80 (332)
                      ++|.|+  .|       ++.|.....|..|+++|++++
T Consensus         1 kp~~C~~~~C-------~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYC-------GKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTC-------CCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCC-------CcccCCHhHHHHHHHHhcCCC
Confidence            367776  67       888888888888888877653

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.39  E-value=5.7e-05  Score=41.64  Aligned_cols=27  Identities=19%  Similarity=0.346  Sum_probs=16.7

Q ss_pred             ceecCCCCCCCCCCCCccCChhhHhhhhccccCC
Q 038715           46 VYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGE   79 (332)
Q Consensus        46 ~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~e   79 (332)
                      +|.|+.|       ++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C-------~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            2 PLKCREC-------GKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CEECTTT-------SCEESCHHHHHHHHHHHHTC
T ss_pred             CccCCCC-------CCccCChhHHHHHHHHhcCC
Confidence            4566666       66666666666666666554

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.37  E-value=7.5e-05  Score=41.42  Aligned_cols=20  Identities=25%  Similarity=0.322  Sum_probs=10.8

Q ss_pred             CCccCChhhHhhhhccccCC
Q 038715           60 SRALGDLTGVKKHFCRKHGE   79 (332)
Q Consensus        60 ~~~f~~~~~L~~H~~~h~~e   79 (332)
                      ++.|.....|..|+++|+++
T Consensus         9 ~k~f~~~~~l~~H~~~h~~~   28 (30)
T 1klr_A            9 EFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             SCCCSCSHHHHHHHHHHTSS
T ss_pred             CCccCCHHHHHHHHHHHccC
Confidence            55555555555555555544

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.37  E-value=6.3e-05  Score=41.38  Aligned_cols=27  Identities=15%  Similarity=0.335  Sum_probs=14.5

Q ss_pred             ceecCCCCCCCCCCCCccCChhhHhhhhccccCC
Q 038715           46 VYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGE   79 (332)
Q Consensus        46 ~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~e   79 (332)
                      +|.|+.|       ++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C-------~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            2 EHKCPHC-------DKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCSSC-------CCCCCTTTHHHHHHHHHHSC
T ss_pred             CCcCCCC-------CcccCCHHHHHHHHHHhccC
Confidence            4555555       55555555555555555443

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.32  E-value=0.0001  Score=40.37  Aligned_cols=26  Identities=12%  Similarity=0.241  Sum_probs=16.9

Q ss_pred             cceecCCCCCCCCCCCCccCChhhHhhhhcccc
Q 038715           45 GVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKH   77 (332)
Q Consensus        45 ~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~   77 (332)
                      ++|.|+.|       ++.|.....|..|+++|+
T Consensus         2 k~~~C~~C-------~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            2 RPYSCSVC-------GKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CSEECSSS-------CCEESCHHHHHHHHTTSC
T ss_pred             cCccCCCC-------CcccCCHHHHHHHHHhcC
Confidence            45666666       666666666666666654

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.43  E-value=3.2e-05  Score=42.89  Aligned_cols=27  Identities=19%  Similarity=0.305  Sum_probs=14.9

Q ss_pred             ceecCCCCCCCCCCCCccCChhhHhhhhccccCC
Q 038715           46 VYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGE   79 (332)
Q Consensus        46 ~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~e   79 (332)
                      +|.|+.|       ++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C-------~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            2 PCQCVMC-------GKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            4555555       55555555555555555543

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.31  E-value=0.00012  Score=39.60  Aligned_cols=26  Identities=15%  Similarity=0.306  Sum_probs=19.1

Q ss_pred             ceecCCCCCCCCCCCCccCChhhHhhhhccccC
Q 038715           46 VYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHG   78 (332)
Q Consensus        46 ~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~   78 (332)
                      +|.|+.|       ++.|.....|..|+++|++
T Consensus         1 ~~~C~~C-------~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLC-------ERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSS-------CCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCC-------CCcCCCHHHHHHHHHHcCC
Confidence            4677777       7778777778888777765

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.30  E-value=0.00015  Score=39.40  Aligned_cols=25  Identities=20%  Similarity=0.379  Sum_probs=16.0

Q ss_pred             CCCccCCCCCCCcccccccccccChhHHHHHHHH
Q 038715          192 SKPYLSSVCGSNACAMAIGSSFTSSTALLQKAAE  225 (332)
Q Consensus       192 ~~p~~C~~C~~~~~~~~~~~~f~~~~~L~~H~~~  225 (332)
                      ++||+|+.|+         +.|.....|..|.+.
T Consensus         1 ek~~~C~~C~---------k~f~~~~~l~~H~~~   25 (27)
T 2kvh_A            1 EKPFSCSLCP---------QRSRDFSAMTKHLRT   25 (27)
T ss_dssp             CCCEECSSSS---------CEESSHHHHHHHHHH
T ss_pred             CcCccCCCcC---------hhhCCHHHHHHHHHH
Confidence            3566666666         666666666666543

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.39  E-value=3.7e-05  Score=42.89  Aligned_cols=20  Identities=25%  Similarity=0.451  Sum_probs=10.5

Q ss_pred             CCccCChhhHhhhhccccCC
Q 038715           60 SRALGDLTGVKKHFCRKHGE   79 (332)
Q Consensus        60 ~~~f~~~~~L~~H~~~h~~e   79 (332)
                      ++.|.....|..|+++|+++
T Consensus        10 ~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A           10 QRQFADPGALQRHVRIHTGE   29 (30)
Confidence            55555555555555555443

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.27  E-value=0.0001  Score=40.24  Aligned_cols=25  Identities=20%  Similarity=0.377  Sum_probs=14.4

Q ss_pred             cceecCCCCCCCCCCCCccCChhhHhhhhccc
Q 038715           45 GVYVCPKPNCVHHHPSRALGDLTGVKKHFCRK   76 (332)
Q Consensus        45 ~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h   76 (332)
                      ++|.|+.|       ++.|.....|..|+++|
T Consensus         2 k~~~C~~C-------~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLC-------RAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTT-------TEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCC-------CcccCCHHHHHHHHHhc
Confidence            35556655       55666666666655554

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.24  E-value=0.00016  Score=40.18  Aligned_cols=27  Identities=22%  Similarity=0.288  Sum_probs=19.1

Q ss_pred             ceecCCCCCCCCCCCCccCChhhHhhh-hccccCC
Q 038715           46 VYVCPKPNCVHHHPSRALGDLTGVKKH-FCRKHGE   79 (332)
Q Consensus        46 ~~~C~~C~C~~~~~~~~f~~~~~L~~H-~~~h~~e   79 (332)
                      +|.|+.|       ++.|.....|..| +++|+++
T Consensus         2 ~~~C~~C-------~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            2 AYACGLC-------NRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CSBCTTT-------CCBCSSSHHHHHHHTTTSCCC
T ss_pred             CcCCccc-------CcccCChHHHHHHHHHHccCC
Confidence            5677777       7777777777777 6677665

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=96.74  E-value=0.00063  Score=37.17  Aligned_cols=25  Identities=28%  Similarity=0.476  Sum_probs=16.1

Q ss_pred             ceecC--CCCCCCCCCCCccCChhhHhhhhcccc
Q 038715           46 VYVCP--KPNCVHHHPSRALGDLTGVKKHFCRKH   77 (332)
Q Consensus        46 ~~~C~--~C~C~~~~~~~~f~~~~~L~~H~~~h~   77 (332)
                      +|.|+  .|       ++.|...+.|..|+++|+
T Consensus         2 ~~~C~~~~C-------~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENC-------GRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTT-------CEEESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcC-------cCccCCHHHHHHHHHHhC
Confidence            46666  66       666666666666666664

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.70  E-value=0.0012  Score=44.76  Aligned_cols=52  Identities=13%  Similarity=0.314  Sum_probs=41.8

Q ss_pred             eecCCCCCCCCCCCCccCChhhHhhhh-ccccCCC------ccccc--cChhhhcCchhhHHHHHH
Q 038715           47 YVCPKPNCVHHHPSRALGDLTGVKKHF-CRKHGEK------KWKCD--KCSKCYAVQSDWKAHTKI  103 (332)
Q Consensus        47 ~~C~~C~C~~~~~~~~f~~~~~L~~H~-~~h~~ek------~~~C~--~C~~~f~~~~~L~~H~~~  103 (332)
                      +.|.+-+|     ++.|.+...|..|+ ..|.+.+      +|.|.  .|++.+.....|..|++.
T Consensus         2 l~C~W~~C-----~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~   62 (64)
T 1zw8_A            2 LKCKWKEC-----PESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINA   62 (64)
T ss_dssp             CCCCCTTC-----CCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHH
T ss_pred             CeEeeCCC-----CCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccc
Confidence            46777555     89999999999997 4777655      78885  788888888889998886

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.42  E-value=0.00047  Score=52.89  Aligned_cols=33  Identities=6%  Similarity=-0.241  Sum_probs=30.1

Q ss_pred             ccccccCCCCceecccccccccCcccccccccC
Q 038715          159 SRDNIENSLRPLSMSSVGVMVSSNLDPILTSRV  191 (332)
Q Consensus       159 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~  191 (332)
                      .....|+|++||.|..|++.|.+...|..|+++
T Consensus        40 ~~ded~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           40 EFDPDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSCSSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             cccccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            356678999999999999999999999999998

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.29  E-value=0.0045  Score=41.76  Aligned_cols=56  Identities=18%  Similarity=0.181  Sum_probs=41.7

Q ss_pred             ccccccccChhHHHHHH-HhcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccc
Q 038715            9 EVCHKGFQRDQNLQLHR-KGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRK   76 (332)
Q Consensus         9 ~~C~k~f~~~~~L~~H~-~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h   76 (332)
                      ..|++.|.+...|..|+ +.|.+..       ......+|.|.+=+|     ++.+.....|..|++..
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~-------~~~~~~~~~C~W~~C-----~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQD-------FKHPMEPLACNWEDC-----DFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCC-------CCCSSCCEECCCSSC-----CCEESSHHHHHHHHHHH
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCcc-------cCCCCCCCEeeCCCC-----cCCCCChHHHHhhcccc
Confidence            35999999999999998 5786210       000123899996555     88888889999998764

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.17  E-value=0.005  Score=47.76  Aligned_cols=83  Identities=13%  Similarity=0.185  Sum_probs=45.7

Q ss_pred             CceecccccccccChhHHHHHH--HhcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCc
Q 038715            4 NRYICEVCHKGFQRDQNLQLHR--KGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKK   81 (332)
Q Consensus         4 k~~~C~~C~k~f~~~~~L~~H~--~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~   81 (332)
                      +++.|..|+..|.+...+..|.  +.|..            ..+.+.+. ++.....++..+...    .+...+.+.+.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~------------~v~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~   93 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHAN------------KVRRYMAI-NQGEDSVPAKKFKAA----PAEISDGEDRS   93 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHH------------HHHHHHHH-TTCCCCCSCCCCSCC----SSCCSSCCCTT
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHH------------HHHHHhcc-cCcccCCCCCccCCC----ccccccCCCCC
Confidence            5677888888888888888887  45531            00112211 000000002222211    12234455666


Q ss_pred             cccccChhhhcCchhhHHHHHH
Q 038715           82 WKCDKCSKCYAVQSDWKAHTKI  103 (332)
Q Consensus        82 ~~C~~C~~~f~~~~~L~~H~~~  103 (332)
                      |-|..|+..|.+...+..|...
T Consensus        94 ~~C~~C~~~f~s~~~~~~H~~g  115 (127)
T 1zu1_A           94 KCCPVCNMTFSSPVVAESHYIG  115 (127)
T ss_dssp             TEETTTTEECSSHHHHHHHHTS
T ss_pred             eEcCCCCCEeCCHHHHHHHHCC
Confidence            7788888888888877777664

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.16  E-value=0.0047  Score=47.32  Aligned_cols=28  Identities=21%  Similarity=0.342  Sum_probs=25.3

Q ss_pred             CCCCceecccccccccChhHHHHHHHhc
Q 038715            1 MATNRYICEVCHKGFQRDQNLQLHRKGH   28 (332)
Q Consensus         1 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h   28 (332)
                      +|+++|.|..|++.|.+...|..|+++.
T Consensus        46 tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           46 PGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             GGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             CCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            4789999999999999999999998654

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=94.28  E-value=0.0065  Score=47.09  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=19.1

Q ss_pred             CccccccChhhhcCchhhHHHHH
Q 038715           80 KKWKCDKCSKCYAVQSDWKAHTK  102 (332)
Q Consensus        80 k~~~C~~C~~~f~~~~~L~~H~~  102 (332)
                      +++.|..|+..|.+.+.+..|..
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~   53 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQ   53 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHC
Confidence            56788888888888888888885

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.72  E-value=0.032  Score=34.50  Aligned_cols=26  Identities=27%  Similarity=0.395  Sum_probs=23.5

Q ss_pred             CceecccccccccChhHHHHHHHhcC
Q 038715            4 NRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         4 k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      .+|.|+.|+..|.....|+.||+.-.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycC   36 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCC   36 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHC
T ss_pred             CceeCCcccccccchHHHHhhhhhcC
Confidence            67999999999999999999998654

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.80  E-value=0.069  Score=33.02  Aligned_cols=22  Identities=18%  Similarity=0.451  Sum_probs=10.4

Q ss_pred             cccccChhhhcCchhhHHHHHH
Q 038715           82 WKCDKCSKCYAVQSDWKAHTKI  103 (332)
Q Consensus        82 ~~C~~C~~~f~~~~~L~~H~~~  103 (332)
                      |.|+.|+..|.....|+.|++.
T Consensus        13 ~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           13 KICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             CCCTTTCCCCSSHHHHHHHHHH
T ss_pred             eeCCcccccccchHHHHhhhhh
Confidence            4444444444444444444443

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=90.72  E-value=0.072  Score=43.15  Aligned_cols=24  Identities=21%  Similarity=0.429  Sum_probs=11.2

Q ss_pred             hhhHHHHHHhCCCCeeee-cCCccc
Q 038715           95 SDWKAHTKICGTREHRCD-CGIIFS  118 (332)
Q Consensus        95 ~~L~~H~~~h~~k~~~C~-C~k~f~  118 (332)
                      ..+..|.....-++..|. |+..+.
T Consensus        97 ~~l~~H~~~C~~~~v~C~~C~~~~~  121 (170)
T 3hcs_A           97 RHLEDHQAHCEFALMDCPQCQRPFQ  121 (170)
T ss_dssp             GGHHHHHTTCTTSEEECTTTCCEEE
T ss_pred             hHHHHHHhcCCceeeECCCCChHHH
Confidence            344455433333455555 555553

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=87.47  E-value=0.46  Score=38.24  Aligned_cols=81  Identities=21%  Similarity=0.358  Sum_probs=57.6

Q ss_pred             ceec--ccccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCcc
Q 038715            5 RYIC--EVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKW   82 (332)
Q Consensus         5 ~~~C--~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~   82 (332)
                      ...|  .-|+..+. ...|..|...-              ...+..|+.|       +..+ .+..|..|+...-..++.
T Consensus        82 ~v~C~n~GC~~~~~-~~~l~~H~~~C--------------~~~~v~C~~C-------~~~~-~r~~l~~H~~~~C~~r~~  138 (170)
T 3hcs_A           82 MVKCPNEGCLHKME-LRHLEDHQAHC--------------EFALMDCPQC-------QRPF-QKFHINIHILKDCPRRQV  138 (170)
T ss_dssp             EEECCSTTCCCEEE-GGGHHHHHTTC--------------TTSEEECTTT-------CCEE-EGGGHHHHHHHTCTTCEE
T ss_pred             ccCCCCCCCCceec-HhHHHHHHhcC--------------CceeeECCCC-------ChHH-HHHHHHHHhhhhCCCCCe
Confidence            4567  46777654 56788887543              5677899988       7776 567799998777778888


Q ss_pred             ccccChhhhcCchhhHHHHHH-hCCCCe
Q 038715           83 KCDKCSKCYAVQSDWKAHTKI-CGTREH  109 (332)
Q Consensus        83 ~C~~C~~~f~~~~~L~~H~~~-h~~k~~  109 (332)
                      .|+.|+..+. ...|..|... .|+.++
T Consensus       139 ~C~~C~~~~~-~~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          139 SCDNCAASMA-FEDKEIHDQNCPLALEH  165 (170)
T ss_dssp             ECTTTCCEEE-GGGHHHHHTTCCC----
T ss_pred             ECCCCCCccC-HHHHHhHHHhCcChhhh
Confidence            9999988774 4568899887 565543

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=86.61  E-value=0.56  Score=26.97  Aligned_cols=27  Identities=15%  Similarity=0.313  Sum_probs=22.0

Q ss_pred             CccCCCCCCCcccccccccccChhHHHHHHHHhccc
Q 038715          194 PYLSSVCGSNACAMAIGSSFTSSTALLQKAAEMGTM  229 (332)
Q Consensus       194 p~~C~~C~~~~~~~~~~~~f~~~~~L~~H~~~~~~~  229 (332)
                      .|.|++|-         +.|.+...|..|....+..
T Consensus         5 GFiCP~C~---------~~l~s~~~L~~Hye~~H~~   31 (34)
T 3mjh_B            5 GFICPQCM---------KSLGSADELFKHYEAVHDA   31 (34)
T ss_dssp             EEECTTTC---------CEESSHHHHHHHHHHHTSS
T ss_pred             ccCCcHHH---------HHcCCHHHHHHHHHhcccc
Confidence            37888998         8888999999988777654

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=85.77  E-value=0.45  Score=34.95  Aligned_cols=27  Identities=19%  Similarity=0.434  Sum_probs=20.6

Q ss_pred             CceecccccccccCcccccccccCCCCccCCCCCC
Q 038715          168 RPLSMSSVGVMVSSNLDPILTSRVSKPYLSSVCGS  202 (332)
Q Consensus       168 k~~~C~~C~k~F~~~~~L~~H~~~~~p~~C~~C~~  202 (332)
                      .||+|..||..|.        .+..+|-.|+.|..
T Consensus        66 ~p~~C~~CG~~F~--------~~~~kPsrCP~CkS   92 (105)
T 2gmg_A           66 KPAQCRKCGFVFK--------AEINIPSRCPKCKS   92 (105)
T ss_dssp             CCCBBTTTCCBCC--------CCSSCCSSCSSSCC
T ss_pred             ECcChhhCcCeec--------ccCCCCCCCcCCCC
Confidence            4899999999981        23367889999983

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=84.74  E-value=0.73  Score=31.56  Aligned_cols=32  Identities=13%  Similarity=0.162  Sum_probs=13.7

Q ss_pred             ceec-ccccccccCcccccccccC---CCCccCCCCC
Q 038715          169 PLSM-SSVGVMVSSNLDPILTSRV---SKPYLSSVCG  201 (332)
Q Consensus       169 ~~~C-~~C~k~F~~~~~L~~H~~~---~~p~~C~~C~  201 (332)
                      +..| ..|+..+.+ ..|..|+..   .++..|..|+
T Consensus        16 ~v~C~~~C~~~v~r-~~l~~H~~~~C~~r~v~C~~C~   51 (76)
T 2yuc_A           16 VIPCPNRCPMKLSR-RDLPAHLQHDCPKRRLKCEFCG   51 (76)
T ss_dssp             CCBCTTCCSCBCCS-SSSTTTTTTSCTTSCCCCSSSC
T ss_pred             ccCCCccccHHhhH-hHHHhhCHhhCCCcceECCCCC
Confidence            3344 344444332 344444442   4444455554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	332
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.004

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (74), Expect = 0.004
 Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 1/35 (2%)

Query: 75  RKH-GEKKWKCDKCSKCYAVQSDWKAHTKICGTRE 108
           R H GEK ++C  C   +      K H     T  
Sbjct: 1   RTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	332
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.46
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.41
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.04
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.97
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.89
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.88
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.88
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.86
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.85
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.83
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.83
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.81
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.8
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.77
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.77
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.71
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.67
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.67
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.61
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.61
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.55
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.49
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.48
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.41
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.41
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.38
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.32
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.27
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.27
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.27
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.23
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.17
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.14
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.13
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.11
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.1
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.1
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.09
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.01
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.94
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.88
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.73
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.71
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.56
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.5
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.46
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.44
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.31
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.11
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.07
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.06
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.01
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.0
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.95
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.9
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	96.88
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.82
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.79
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.79
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.78
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.76
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.74
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.73
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.61
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.57
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.54
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.51
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.51
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	96.48
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.47
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.14
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.11
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.1
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.09
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.96
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	95.94
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	95.92
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.91
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	95.79
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.76
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.7
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	95.61
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.51
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	95.39
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.32
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.28
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	94.95
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.84
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.74
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	94.61
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	94.58
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	94.51
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	94.08
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	93.13
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	92.88
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	92.85
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	91.97
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	91.46
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	91.09
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	90.32
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	89.64
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	84.11
d1y0jb1	36	U-shaped transcription factor, different fingers {	83.33
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	83.11
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	81.75
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	81.7
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	80.93
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	80.65

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.8e-14  Score=93.98  Aligned_cols=53  Identities=19%  Similarity=0.269  Sum_probs=41.3

Q ss_pred             CCceecccccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccc
Q 038715            3 TNRYICEVCHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRK   76 (332)
Q Consensus         3 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h   76 (332)
                      ||||+|+ ||+.|.....|..|+++|+             +++||.|++|       ++.|...+.|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht-------------~ekpy~C~~C-------~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHL-------------GLRPYGCGVC-------GKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHS-------------CCCSEECTTT-------SCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccc-------------cccCCcCCCc-------CCEecCHHHHHHHHhcC
Confidence            5778884 8888888888888887777             7777888887       78888888888887765

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3e-14  Score=92.91  Aligned_cols=53  Identities=19%  Similarity=0.475  Sum_probs=48.7

Q ss_pred             CcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccccChhhhcCchhhHHHHHHh
Q 038715           44 KGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKIC  104 (332)
Q Consensus        44 ~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~h  104 (332)
                      +++|.| .|       ++.|.....|..|+++|++++||.|.+|+++|...+.|..|+++|
T Consensus         1 EK~y~C-~C-------gk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QC-------GKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TT-------SCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CC-------CCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            578999 48       999999999999999999999999999999999999999998764

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=7.5e-11  Score=70.27  Aligned_cols=38  Identities=34%  Similarity=0.607  Sum_probs=34.4

Q ss_pred             CCCCceecccccccccChhHHHHHHH-hcCCCcccccCccccCCCcceecCC
Q 038715            1 MATNRYICEVCHKGFQRDQNLQLHRK-GHNLPWKLMQRPTTQVKKGVYVCPK   51 (332)
Q Consensus         1 ~~~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~~~l~~~~~~~~~~~~~~C~~   51 (332)
                      +.+|||+|++||+.|.+..+|.+|++ +|+             +++||.|++
T Consensus         1 s~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht-------------~ekpy~C~i   39 (39)
T d2epsa1           1 SVGKPYICQSCGKGFSRPDHLNGHIKQVHT-------------SERPHKCQV   39 (39)
T ss_dssp             CSSCCEECSSSCCEESSHHHHHHHHHHTSC-------------CCCCCCSSS
T ss_pred             CCCCCccCCCCCCCcCChHHhhccCcCccC-------------CCcCcCCcC
Confidence            35899999999999999999999986 798             999999974

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=2.8e-11  Score=71.71  Aligned_cols=32  Identities=9%  Similarity=0.098  Sum_probs=30.1

Q ss_pred             cccccCCCCceecccccccccCcccccccccC
Q 038715          160 RDNIENSLRPLSMSSVGVMVSSNLDPILTSRV  191 (332)
Q Consensus       160 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~  191 (332)
                      |.|+|++||||+|++|+++|.++++|.+|+++
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~   33 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhc
Confidence            78999999999999999999999999999876

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=4.3e-10  Score=65.16  Aligned_cols=29  Identities=24%  Similarity=0.566  Sum_probs=28.1

Q ss_pred             CCCCceecccccccccChhHHHHHHHhcC
Q 038715            1 MATNRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         1 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      +|||||+|++|++.|.++.+|.+|+++|+
T Consensus         3 TGekPy~C~~C~k~F~~~~~L~~H~r~Ht   31 (35)
T d1srka_           3 SGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             SCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCccccCCCCCCcccChHHHHHHccccC
Confidence            68999999999999999999999999997

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=8e-11  Score=69.20  Aligned_cols=30  Identities=7%  Similarity=-0.019  Sum_probs=27.9

Q ss_pred             cccCCCCceecccccccccCcccccccccC
Q 038715          162 NIENSLRPLSMSSVGVMVSSNLDPILTSRV  191 (332)
Q Consensus       162 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~  191 (332)
                      |+|++||||+|.+|+++|.++++|..|+++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~   30 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKR   30 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcc
Confidence            589999999999999999999999999887

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.88  E-value=2.1e-10  Score=67.83  Aligned_cols=33  Identities=18%  Similarity=0.407  Sum_probs=26.4

Q ss_pred             hhccccCCCccccccChhhhcCchhhHHHHHHh
Q 038715           72 HFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKIC  104 (332)
Q Consensus        72 H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~h  104 (332)
                      |.|+|++|+||+|++|++.|..+++|..|+++|
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H   34 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcC
Confidence            677888888888888888888888888887765

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=3.7e-10  Score=66.30  Aligned_cols=31  Identities=26%  Similarity=0.491  Sum_probs=24.7

Q ss_pred             ccccCCCccccccChhhhcCchhhHHHHHHh
Q 038715           74 CRKHGEKKWKCDKCSKCYAVQSDWKAHTKIC  104 (332)
Q Consensus        74 ~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~h  104 (332)
                      |+|+||+||+|.+|+++|..++.|..|+++|
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H   31 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRY   31 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHT
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCccc
Confidence            4678888888888888888888888888774

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=5.6e-10  Score=66.40  Aligned_cols=37  Identities=16%  Similarity=0.350  Sum_probs=30.3

Q ss_pred             CCcceecCCCCCCCCCCCCccCChhhHhhhhc-cccCCCcccccc
Q 038715           43 KKGVYVCPKPNCVHHHPSRALGDLTGVKKHFC-RKHGEKKWKCDK   86 (332)
Q Consensus        43 ~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~-~h~~ek~~~C~~   86 (332)
                      .++||.|..|       ++.|...+.|..|++ +|++|+||+|++
T Consensus         2 ~~Kpy~C~~C-------gk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSC-------GKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSS-------CCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCC-------CCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            4678888888       888888888888865 688888888864

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=2.9e-10  Score=67.66  Aligned_cols=32  Identities=25%  Similarity=0.642  Sum_probs=16.7

Q ss_pred             hhccccCCCccccccChhhhcCchhhHHHHHH
Q 038715           72 HFCRKHGEKKWKCDKCSKCYAVQSDWKAHTKI  103 (332)
Q Consensus        72 H~~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~  103 (332)
                      |+++|++++||+|++|+++|...++|..|+++
T Consensus         3 H~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~   34 (38)
T d2cota2           3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRT   34 (38)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTT
T ss_pred             cCcccCCCCCEecCCCCceeeCHHHHHHhCcc
Confidence            44555555555555555555555555555554

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=8.7e-10  Score=62.96  Aligned_cols=29  Identities=31%  Similarity=0.550  Sum_probs=28.2

Q ss_pred             CCCCceecccccccccChhHHHHHHHhcC
Q 038715            1 MATNRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         1 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      ||+|||+|.+||+.|.+.++|..|+++|+
T Consensus         3 Tgekpy~C~~Cgk~F~~~~~L~~H~r~Ht   31 (33)
T d1x6ea1           3 SGEKPYGCVECGKAFSRSSILVQHQRVHT   31 (33)
T ss_dssp             TTCCCEECSSSCCEESSHHHHHHHHHGGG
T ss_pred             CCCCCeeCCCCCCEeCchHHhHhhccccC
Confidence            68999999999999999999999999997

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.8e-10  Score=67.50  Aligned_cols=29  Identities=3%  Similarity=-0.069  Sum_probs=25.3

Q ss_pred             cccCCCCceecccccccccCccccccccc
Q 038715          162 NIENSLRPLSMSSVGVMVSSNLDPILTSR  190 (332)
Q Consensus       162 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~  190 (332)
                      |+|+|||||+|++|++.|.++++|.+|++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~   29 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHIL   29 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHH
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcc
Confidence            57899999999999999999999988864

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.80  E-value=7.5e-10  Score=60.66  Aligned_cols=27  Identities=26%  Similarity=0.744  Sum_probs=26.1

Q ss_pred             CCceecccccccccChhHHHHHHHhcC
Q 038715            3 TNRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         3 ~k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      ||||+|++|++.|.+..+|.+|+++|+
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HT   27 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHT   27 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCCcc
Confidence            799999999999999999999999996

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=9.1e-10  Score=64.46  Aligned_cols=33  Identities=21%  Similarity=0.371  Sum_probs=26.9

Q ss_pred             ccccCCCccccccChhhhcCchhhHHHHHH-hCC
Q 038715           74 CRKHGEKKWKCDKCSKCYAVQSDWKAHTKI-CGT  106 (332)
Q Consensus        74 ~~h~~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~  106 (332)
                      ++|+||+||+|++|++.|..+++|+.|++. |++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            578888888888888888888888888876 643

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.77  E-value=3.6e-10  Score=65.50  Aligned_cols=28  Identities=11%  Similarity=0.076  Sum_probs=25.3

Q ss_pred             cCCCCceecccccccccCcccccccccC
Q 038715          164 ENSLRPLSMSSVGVMVSSNLDPILTSRV  191 (332)
Q Consensus       164 h~~~k~~~C~~C~k~F~~~~~L~~H~~~  191 (332)
                      |+|||||+|.+|++.|.++++|.+|+++
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~   29 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKV   29 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccc
Confidence            7899999999999999999999999886

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=3.9e-09  Score=62.65  Aligned_cols=36  Identities=19%  Similarity=0.325  Sum_probs=32.5

Q ss_pred             CccccCCCcceecCCCCCCCCCCCCccCChhhHhhhhccccCC
Q 038715           37 RPTTQVKKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGE   79 (332)
Q Consensus        37 ~~~~~~~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~e   79 (332)
                      |+.+|++++||.|++|       ++.|...+.|..|+++|+||
T Consensus         3 H~~~Ht~ekpy~C~~C-------gK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           3 SEWQQRERRRYKCDEC-------GKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCSCCCCSCSSBCSSS-------CCBCSCHHHHHHHHTTTCCS
T ss_pred             cCcccCCCCCEecCCC-------CceeeCHHHHHHhCccCCCC
Confidence            4455559999999999       99999999999999999986

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.67  E-value=4.9e-09  Score=58.03  Aligned_cols=26  Identities=35%  Similarity=0.943  Sum_probs=25.4

Q ss_pred             CceecccccccccChhHHHHHHHhcC
Q 038715            4 NRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         4 k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      |||+|++|++.|.+..+|.+|+++|+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HT   26 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTT
T ss_pred             CcCCCCCCCCCCCCchHcccccCccc
Confidence            69999999999999999999999998

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=3.1e-09  Score=56.67  Aligned_cols=26  Identities=31%  Similarity=0.629  Sum_probs=24.7

Q ss_pred             CceecccccccccChhHHHHHHHhcC
Q 038715            4 NRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         4 k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      |||+|.+|||.|.+.++|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            79999999999999999999999983

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=8.2e-09  Score=58.80  Aligned_cols=30  Identities=20%  Similarity=0.261  Sum_probs=18.8

Q ss_pred             CCcceecCCCCCCCCCCCCccCChhhHhhhhccccCC
Q 038715           43 KKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGE   79 (332)
Q Consensus        43 ~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~e   79 (332)
                      +++||.|.+|       ++.|...+.|..|+++|+||
T Consensus         4 gekpy~C~~C-------gk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           4 GEKPYGCVEC-------GKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TCCCEECSSS-------CCEESSHHHHHHHHHGGGCS
T ss_pred             CCCCeeCCCC-------CCEeCchHHhHhhccccCCC
Confidence            5666666666       66666666666666666654

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=7.2e-09  Score=57.24  Aligned_cols=26  Identities=35%  Similarity=0.735  Sum_probs=25.3

Q ss_pred             CceecccccccccChhHHHHHHHhcC
Q 038715            4 NRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         4 k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      |||.|++||+.|.+.++|.+|+++|+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Ht   26 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQ   26 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGG
T ss_pred             CCEECCcCCCeecchHHhhhhcCccC
Confidence            79999999999999999999999998

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.2e-08  Score=59.45  Aligned_cols=34  Identities=21%  Similarity=0.691  Sum_probs=30.0

Q ss_pred             eecCCCCCCCCCCCCccCChhhHhhhhccccCCCccccc
Q 038715           47 YVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWKCD   85 (332)
Q Consensus        47 ~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~C~   85 (332)
                      |.|++-+|     ++.|.....|..|+++|++++||+|+
T Consensus         2 f~C~~~~C-----~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPAC-----GKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTT-----CCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCC-----CCeeCChhHhccccCeeCCCCCEeCC
Confidence            78887545     99999999999999999999999996

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.49  E-value=2.8e-08  Score=54.86  Aligned_cols=29  Identities=28%  Similarity=0.510  Sum_probs=23.3

Q ss_pred             cceecCCCCCCCCCCCCccCChhhHhhhhccccCCC
Q 038715           45 GVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEK   80 (332)
Q Consensus        45 ~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek   80 (332)
                      +||.|++|       ++.|...+.|..|+++|+||+
T Consensus         1 kp~~C~~C-------~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVC-------TRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTT-------CCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCC-------CCCCCCchHcccccCcccCCC
Confidence            47888888       888888888888888888875

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=2.4e-08  Score=58.11  Aligned_cols=33  Identities=30%  Similarity=0.625  Sum_probs=30.7

Q ss_pred             eeccc--ccccccChhHHHHHHHhcCCCcccccCccccCCCcceecCC
Q 038715            6 YICEV--CHKGFQRDQNLQLHRKGHNLPWKLMQRPTTQVKKGVYVCPK   51 (332)
Q Consensus         6 ~~C~~--C~k~f~~~~~L~~H~~~h~~~~~l~~~~~~~~~~~~~~C~~   51 (332)
                      |.|+.  |++.|.++.+|++|+++|+             +++||.|++
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Ht-------------gekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHS-------------DTRDYICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHH-------------TSCCCSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCeeC-------------CCCCEeCCC
Confidence            78976  9999999999999999998             999999974

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=5.1e-08  Score=53.72  Aligned_cols=29  Identities=17%  Similarity=0.375  Sum_probs=21.0

Q ss_pred             cceecCCCCCCCCCCCCccCChhhHhhhhccccCCC
Q 038715           45 GVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEK   80 (332)
Q Consensus        45 ~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek   80 (332)
                      +||.|++|       ++.|...+.|..|+++|++|+
T Consensus         1 Kpy~C~~C-------~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPEC-------PKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTT-------TCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcC-------CCeecchHHhhhhcCccCCcC
Confidence            46777777       777777777777777777764

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.41  E-value=3.1e-08  Score=61.38  Aligned_cols=39  Identities=18%  Similarity=0.400  Sum_probs=28.4

Q ss_pred             hHhhhhccccCCCcccccc--ChhhhcCchhhHHHHHHh-CCC
Q 038715           68 GVKKHFCRKHGEKKWKCDK--CSKCYAVQSDWKAHTKIC-GTR  107 (332)
Q Consensus        68 ~L~~H~~~h~~ek~~~C~~--C~~~f~~~~~L~~H~~~h-~~k  107 (332)
                      .|..|+. |++++||+|++  |++.|...++|..|+++| ++|
T Consensus         6 ~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           6 SIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            4556664 78888888866  888888888888888874 553

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.38  E-value=4.8e-08  Score=53.27  Aligned_cols=27  Identities=15%  Similarity=0.263  Sum_probs=14.9

Q ss_pred             cceecCCCCCCCCCCCCccCChhhHhhhhccccC
Q 038715           45 GVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHG   78 (332)
Q Consensus        45 ~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~   78 (332)
                      +||+|++|       ++.|...+.|..|+++|+|
T Consensus         2 KPy~C~~C-------~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           2 KPFQCRIC-------MRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCEECTTT-------CCEESCHHHHHHHHHHHHC
T ss_pred             cCccCCCC-------cCEecccccccccCCCccC
Confidence            45555555       5555555555555555543

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.4e-07  Score=52.22  Aligned_cols=26  Identities=31%  Similarity=0.666  Sum_probs=25.1

Q ss_pred             Cceeccc--ccccccChhHHHHHHHhcC
Q 038715            4 NRYICEV--CHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         4 k~~~C~~--C~k~f~~~~~L~~H~~~h~   29 (332)
                      |||+|+.  |++.|.+..+|++|+++|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~Ht   28 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHT   28 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTT
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCc
Confidence            7999988  9999999999999999998

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.27  E-value=3e-08  Score=61.49  Aligned_cols=33  Identities=6%  Similarity=0.238  Sum_probs=30.5

Q ss_pred             cCCCcceecCC--CCCCCCCCCCccCChhhHhhhhccccCCC
Q 038715           41 QVKKGVYVCPK--PNCVHHHPSRALGDLTGVKKHFCRKHGEK   80 (332)
Q Consensus        41 ~~~~~~~~C~~--C~C~~~~~~~~f~~~~~L~~H~~~h~~ek   80 (332)
                      +.+++||.|++  |       ++.|...+.|..|+++|++|+
T Consensus        13 h~gekpy~C~~~~C-------~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          13 EMPDKTFECLFPGC-------TKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EETTTEEECCCTTC-------CCEECSSSSHHHHHHHHTTTC
T ss_pred             ccCCCCeECCcCCC-------CccccCchHHHhhcccccCCC
Confidence            44999999988  7       999999999999999999985

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=2.3e-07  Score=51.91  Aligned_cols=31  Identities=19%  Similarity=0.460  Sum_probs=26.2

Q ss_pred             cceecCCCCCCCCCCCCccCChhhHhhhhccccCCC
Q 038715           45 GVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEK   80 (332)
Q Consensus        45 ~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek   80 (332)
                      +||.|++-+|     ++.|...+.|..|+++|++|+
T Consensus         1 kpf~C~~~~C-----~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYC-----GKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTC-----CCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCC-----CcCcCChhHhhhhcCcccccC
Confidence            5789976555     999999999999999999885

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.5e-07  Score=52.24  Aligned_cols=26  Identities=35%  Similarity=0.650  Sum_probs=24.8

Q ss_pred             Cceeccc--ccccccChhHHHHHHHhcC
Q 038715            4 NRYICEV--CHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         4 k~~~C~~--C~k~f~~~~~L~~H~~~h~   29 (332)
                      |||.|+.  |++.|.+..+|.+|+++|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HT   28 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHT   28 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred             CCccCCCCCCCceECcHHHcCccccccC
Confidence            7999987  9999999999999999997

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.23  E-value=2.6e-07  Score=51.96  Aligned_cols=27  Identities=37%  Similarity=0.838  Sum_probs=25.8

Q ss_pred             CCceeccc--ccccccChhHHHHHHHhcC
Q 038715            3 TNRYICEV--CHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         3 ~k~~~C~~--C~k~f~~~~~L~~H~~~h~   29 (332)
                      |+||.|+.  |++.|.+..+|.+|+++|+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            79999988  9999999999999999996

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=4.3e-07  Score=50.73  Aligned_cols=26  Identities=35%  Similarity=0.832  Sum_probs=24.5

Q ss_pred             Cceecc--cccccccChhHHHHHHHhcC
Q 038715            4 NRYICE--VCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         4 k~~~C~--~C~k~f~~~~~L~~H~~~h~   29 (332)
                      |||.|+  .|++.|.+..+|.+|+++|+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Ht   28 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCccc
Confidence            699995  69999999999999999998

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=3.6e-07  Score=50.64  Aligned_cols=30  Identities=13%  Similarity=0.348  Sum_probs=23.0

Q ss_pred             cceecCCCCCCCCCCCCccCChhhHhhhhccccCC
Q 038715           45 GVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGE   79 (332)
Q Consensus        45 ~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~e   79 (332)
                      +||.|++-+|     ++.|...+.|..|+++|+||
T Consensus         1 kp~~C~~~gC-----gk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGC-----GKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTC-----CCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCC-----CceECcHHHcCccccccCCC
Confidence            4788877444     88888888888888888775

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=4.7e-07  Score=50.06  Aligned_cols=30  Identities=23%  Similarity=0.469  Sum_probs=23.5

Q ss_pred             cceecCCCCCCCCCCCCccCChhhHhhhhccccCC
Q 038715           45 GVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGE   79 (332)
Q Consensus        45 ~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~e   79 (332)
                      +||.|++-||     ++.|...+.|..|+++|+||
T Consensus         1 kp~~C~~~gC-----gk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGC-----RKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTC-----CCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCC-----CceECChhHhhhhcCcCcCC
Confidence            4788888333     88888888888888888875

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=3.5e-07  Score=48.53  Aligned_cols=23  Identities=30%  Similarity=0.700  Sum_probs=11.0

Q ss_pred             ccccccChhhhcCchhhHHHHHH
Q 038715           81 KWKCDKCSKCYAVQSDWKAHTKI  103 (332)
Q Consensus        81 ~~~C~~C~~~f~~~~~L~~H~~~  103 (332)
                      ||+|.+||++|...+.|.+|+++
T Consensus         2 Py~C~eCgK~F~~~s~L~~Hqri   24 (26)
T d1x6ea2           2 PYKCLECGKAFSQNSGLINHQRI   24 (26)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH
T ss_pred             CccCCCCcCeeccCcccccCccC
Confidence            44444444444444444444444

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.10  E-value=4.2e-07  Score=49.80  Aligned_cols=26  Identities=35%  Similarity=0.755  Sum_probs=24.5

Q ss_pred             Cceeccc--ccccccChhHHHHHHHhcC
Q 038715            4 NRYICEV--CHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         4 k~~~C~~--C~k~f~~~~~L~~H~~~h~   29 (332)
                      |||.|+.  |++.|.+..+|.+|+++|+
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccC
Confidence            7999987  9999999999999999996

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=3.7e-07  Score=49.48  Aligned_cols=26  Identities=35%  Similarity=0.747  Sum_probs=24.4

Q ss_pred             Cceeccc--ccccccChhHHHHHHHhcC
Q 038715            4 NRYICEV--CHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         4 k~~~C~~--C~k~f~~~~~L~~H~~~h~   29 (332)
                      |||.|+.  ||+.|.+..+|++|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6999987  9999999999999999984

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.09  E-value=9.4e-07  Score=46.14  Aligned_cols=27  Identities=26%  Similarity=0.636  Sum_probs=25.5

Q ss_pred             CCceecccccccccChhHHHHHHHhcC
Q 038715            3 TNRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         3 ~k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      ||||.|+.||+.|.+....++|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            699999999999999999999999984

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.3e-06  Score=44.05  Aligned_cols=25  Identities=40%  Similarity=0.725  Sum_probs=23.7

Q ss_pred             ceecccccccccChhHHHHHHHhcC
Q 038715            5 RYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         5 ~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      |++|+.|++.|.++..|+.|++.|+
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccC
Confidence            6799999999999999999999996

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.94  E-value=1.4e-06  Score=47.66  Aligned_cols=29  Identities=24%  Similarity=0.616  Sum_probs=23.0

Q ss_pred             cceecCCCCCCCCCCCCccCChhhHhhhhccccC
Q 038715           45 GVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHG   78 (332)
Q Consensus        45 ~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~   78 (332)
                      +||.|++.||     ++.|...+.|..|+++|+|
T Consensus         1 Kp~~C~~~gC-----~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESC-----DRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTC-----CCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCC-----CcEECchhHhhhhcCccCC
Confidence            5788888555     8888888888888888875

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.88  E-value=4.1e-06  Score=46.88  Aligned_cols=30  Identities=20%  Similarity=0.438  Sum_probs=19.4

Q ss_pred             CcceecCCCCCCCCCCCCccCChhhHhhhhccccC
Q 038715           44 KGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHG   78 (332)
Q Consensus        44 ~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~   78 (332)
                      ++||.|++-||     ++.|...+.|..|+++|+.
T Consensus         1 ErP~~C~~pgC-----~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGC-----DKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTC-----CCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCC-----CCeeCCHHHHHHHhhhccC
Confidence            35667766444     6777777777777776654

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=4.3e-06  Score=45.14  Aligned_cols=28  Identities=29%  Similarity=0.631  Sum_probs=15.9

Q ss_pred             cceecCCCCCCCCCCCCccCChhhHhhhhcccc
Q 038715           45 GVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKH   77 (332)
Q Consensus        45 ~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~   77 (332)
                      +||.|++-||     ++.|...++|+.|+++|+
T Consensus         1 rPf~C~~~gC-----~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGC-----NKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTC-----CCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCc-----CCcCCCHHHHHHHHhhcc
Confidence            3556665444     666666666666665553

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.71  E-value=4.3e-06  Score=43.60  Aligned_cols=26  Identities=42%  Similarity=0.764  Sum_probs=18.2

Q ss_pred             CCccccccChhhhcCchhhHHHHHHh
Q 038715           79 EKKWKCDKCSKCYAVQSDWKAHTKIC  104 (332)
Q Consensus        79 ek~~~C~~C~~~f~~~~~L~~H~~~h  104 (332)
                      |+||.|++||+.|......++|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            46777777777777777777776654

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=1.5e-05  Score=42.14  Aligned_cols=27  Identities=30%  Similarity=0.746  Sum_probs=25.7

Q ss_pred             CCceecccccccccChhHHHHHHHhcC
Q 038715            3 TNRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         3 ~k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      ||||.|++|+..|.++..+.-|.+.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshd   27 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHD   27 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHS
T ss_pred             CCCcccchHHHHhhccccceEeeeccc
Confidence            699999999999999999999999996

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=3e-05  Score=38.98  Aligned_cols=26  Identities=15%  Similarity=0.235  Sum_probs=18.7

Q ss_pred             ceecCCCCCCCCCCCCccCChhhHhhhhccccC
Q 038715           46 VYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHG   78 (332)
Q Consensus        46 ~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~   78 (332)
                      |++|+.|       ++-|..+..|+.|++.|+|
T Consensus         1 phkc~~c-------~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVC-------GKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTT-------TBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchh-------hhHhcchhHHHHHhhccCC
Confidence            3567777       7777777777777777764

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=3.2e-05  Score=41.79  Aligned_cols=33  Identities=18%  Similarity=0.356  Sum_probs=28.6

Q ss_pred             CcceecCCCCCCCCCCCCccCChhhHhhhhccccCCCccc
Q 038715           44 KGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEKKWK   83 (332)
Q Consensus        44 ~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek~~~   83 (332)
                      .+...|..|       |+.|.....|.+|...|++|+||.
T Consensus         3 rk~~~ce~c-------gk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           3 RKQVACEIC-------GKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             CCSEEETTT-------TEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             chhhhHHHH-------HHHHHHHHHHHhhhcccCCCCCCC
Confidence            345689999       999999999999999999999973

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=4.3e-05  Score=41.29  Aligned_cols=26  Identities=31%  Similarity=0.623  Sum_probs=24.3

Q ss_pred             CceecccccccccChhHHHHHHHhcC
Q 038715            4 NRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         4 k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      +...|+.||+.|.....|.+|...|.
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs   29 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHS   29 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccC
Confidence            56789999999999999999999998

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=6.1e-05  Score=38.82  Aligned_cols=29  Identities=14%  Similarity=0.252  Sum_probs=21.4

Q ss_pred             CcceecCCCCCCCCCCCCccCChhhHhhhhccccCC
Q 038715           44 KGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGE   79 (332)
Q Consensus        44 ~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~e   79 (332)
                      ++||+|..|       ...-...+.|..|++.|+|+
T Consensus         1 erpfkcqlc-------sy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQIC-------PYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSS-------SCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeec-------ccccCCchheEEeeecccCc
Confidence            367778777       77777777777787777763

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00015  Score=41.45  Aligned_cols=27  Identities=22%  Similarity=0.545  Sum_probs=24.6

Q ss_pred             CCCCceecccccccccChhHHHHHHHh
Q 038715            1 MATNRYICEVCHKGFQRDQNLQLHRKG   27 (332)
Q Consensus         1 ~~~k~~~C~~C~k~f~~~~~L~~H~~~   27 (332)
                      ||.|||.|..|+|.|.....+.+|...
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhh
Confidence            688999999999999999999999643

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00023  Score=36.64  Aligned_cols=27  Identities=19%  Similarity=0.581  Sum_probs=25.7

Q ss_pred             CCceecccccccccChhHHHHHHHhcC
Q 038715            3 TNRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         3 ~k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      |+||+|..|...-...+.|..|++.|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~ht   27 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHT   27 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCC
T ss_pred             CCcceeeecccccCCchheEEeeeccc
Confidence            689999999999999999999999997

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=4.3e-05  Score=43.71  Aligned_cols=22  Identities=23%  Similarity=0.578  Sum_probs=12.2

Q ss_pred             CCccCCCCCCCcccccccccccChhHHHHHH
Q 038715          193 KPYLSSVCGSNACAMAIGSSFTSSTALLQKA  223 (332)
Q Consensus       193 ~p~~C~~C~~~~~~~~~~~~f~~~~~L~~H~  223 (332)
                      +||.|.+|+         +.|+-+.+..+|.
T Consensus         4 KPYeC~~C~---------KrFMWRDSF~RH~   25 (44)
T d2csha2           4 KPYECNICA---------KRFMWRDSFHRHV   25 (44)
T ss_dssp             CCEECSSSC---------CEESCHHHHHHHH
T ss_pred             Cceeccchh---------hhhhhHHHHHHhh
Confidence            455555555         5555555555554

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00026  Score=36.21  Aligned_cols=25  Identities=28%  Similarity=0.555  Sum_probs=23.3

Q ss_pred             ceecccccccccChhHHHHHHHhcC
Q 038715            5 RYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         5 ~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      .+.|.+||+.|...+.|++|+..|+
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvht   26 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHT   26 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTS
T ss_pred             cchHHHHhHHHHHHHHHHHHhhccc
Confidence            4689999999999999999999997

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00025  Score=36.19  Aligned_cols=26  Identities=23%  Similarity=0.499  Sum_probs=24.8

Q ss_pred             CceecccccccccChhHHHHHHHhcC
Q 038715            4 NRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         4 k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      |||+|..|+..-...+.|..|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            79999999999999999999999985

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00028  Score=36.62  Aligned_cols=28  Identities=11%  Similarity=0.272  Sum_probs=23.6

Q ss_pred             CCccCCCCCCCcccccccccccChhHHHHHHHHhccc
Q 038715          193 KPYLSSVCGSNACAMAIGSSFTSSTALLQKAAEMGTM  229 (332)
Q Consensus       193 ~p~~C~~C~~~~~~~~~~~~f~~~~~L~~H~~~~~~~  229 (332)
                      +||+|+.|.         ..-.+.++|..|+++.+..
T Consensus         1 rPFkC~~Cs---------FDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           1 RPFKCNYCS---------FDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             CSEECSSSS---------CEESSHHHHHHHHHHHHSS
T ss_pred             CCcccceec---------ccccCcchHHHHHHHHccC
Confidence            689999999         7888899999998887654

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.90  E-value=0.00025  Score=35.12  Aligned_cols=24  Identities=29%  Similarity=0.767  Sum_probs=22.5

Q ss_pred             eecccccccccChhHHHHHHHhcC
Q 038715            6 YICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         6 ~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      |+|..|.+.|..++.|.+|++.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999983

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00028  Score=36.50  Aligned_cols=27  Identities=19%  Similarity=0.314  Sum_probs=21.0

Q ss_pred             eecCCCCCCCCCCCCccCChhhHhhhhccccCCC
Q 038715           47 YVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEK   80 (332)
Q Consensus        47 ~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek   80 (332)
                      |.|+.|       +......+.|+.|++.|++++
T Consensus         2 YvC~~C-------g~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEEC-------GIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTT-------CCBCSSHHHHHHHHHHTSSCC
T ss_pred             cccccc-------CcccCCHHHHHHHHHHhcCCC
Confidence            678888       777777888888888887764

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00021  Score=37.57  Aligned_cols=27  Identities=19%  Similarity=0.300  Sum_probs=15.5

Q ss_pred             cceecCCCCCCCCCCCCccCChhhHhhhhccccC
Q 038715           45 GVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHG   78 (332)
Q Consensus        45 ~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~   78 (332)
                      +||.|++|       ...|+.+..+.-|.+.|.|
T Consensus         2 kp~~cpic-------~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           2 KPYSCPVC-------GLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CSSEETTT-------TEECSCHHHHHHHHHHHSC
T ss_pred             CCcccchH-------HHHhhccccceEeeecccC
Confidence            45556665       5556655555555555544

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.79  E-value=0.00027  Score=37.56  Aligned_cols=27  Identities=26%  Similarity=0.587  Sum_probs=24.0

Q ss_pred             CccCCCCCCCcccccccccccChhHHHHHHHHhccc
Q 038715          194 PYLSSVCGSNACAMAIGSSFTSSTALLQKAAEMGTM  229 (332)
Q Consensus       194 p~~C~~C~~~~~~~~~~~~f~~~~~L~~H~~~~~~~  229 (332)
                      ||.|.+|+         +.|.++.-|++|+.+.++.
T Consensus         1 Pf~C~~C~---------R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCN---------RAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTC---------CEESSHHHHHHHHTTTSCC
T ss_pred             Cccccccc---------chhhHHHHHHHHHHHHhcC
Confidence            79999999         9999999999999888764

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00047  Score=36.27  Aligned_cols=26  Identities=23%  Similarity=0.609  Sum_probs=20.6

Q ss_pred             CCccCCC--CCCCcccccccccccChhHHHHHHHHhc
Q 038715          193 KPYLSSV--CGSNACAMAIGSSFTSSTALLQKAAEMG  227 (332)
Q Consensus       193 ~p~~C~~--C~~~~~~~~~~~~f~~~~~L~~H~~~~~  227 (332)
                      +||.|.+  |+         ++|+..++|.+|++.++
T Consensus         1 KPY~Ck~~gC~---------K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGCT---------KRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTTC---------CEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCCC---------cccCCHHHHHHHHHhhC
Confidence            5788876  77         88888888888887654

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.78  E-value=0.00037  Score=35.94  Aligned_cols=25  Identities=36%  Similarity=0.596  Sum_probs=22.9

Q ss_pred             Cceeccc--ccccccChhHHHHHHHhc
Q 038715            4 NRYICEV--CHKGFQRDQNLQLHRKGH   28 (332)
Q Consensus         4 k~~~C~~--C~k~f~~~~~L~~H~~~h   28 (332)
                      .||+|++  |++.|...+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            5899975  999999999999999887

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00035  Score=36.78  Aligned_cols=27  Identities=33%  Similarity=0.736  Sum_probs=15.6

Q ss_pred             ceecCCCCCCCCCCCCccCChhhHhhhhcccc
Q 038715           46 VYVCPKPNCVHHHPSRALGDLTGVKKHFCRKH   77 (332)
Q Consensus        46 ~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~   77 (332)
                      ||.|...||     ++.+...+.|..|++.++
T Consensus         2 PY~Ck~~gC-----~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           2 PYVCKLPGC-----TKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CEECCSTTT-----CCEESSHHHHHHHHHHSC
T ss_pred             CeecccCCC-----CcccCCHHHHHHHHHhhC
Confidence            556666555     566666666666655443

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00019  Score=37.14  Aligned_cols=23  Identities=17%  Similarity=0.541  Sum_probs=16.6

Q ss_pred             ccccccChhhhcCchhhHHHHHH
Q 038715           81 KWKCDKCSKCYAVQSDWKAHTKI  103 (332)
Q Consensus        81 ~~~C~~C~~~f~~~~~L~~H~~~  103 (332)
                      ||.|..|...|.++.+|.+|++.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            56777777777777777777765

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00049  Score=35.15  Aligned_cols=26  Identities=27%  Similarity=0.442  Sum_probs=21.2

Q ss_pred             eecCCCCCCCCCCCCccCChhhHhhhhccccCC
Q 038715           47 YVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGE   79 (332)
Q Consensus        47 ~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~e   79 (332)
                      +.|.+|       ++.|...+.|++|+.+|++|
T Consensus         3 hvc~ec-------gkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAEC-------GKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTT-------CCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHH-------hHHHHHHHHHHHHhhcccCC
Confidence            567888       88888888888888888875

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00044  Score=35.91  Aligned_cols=26  Identities=31%  Similarity=0.485  Sum_probs=20.7

Q ss_pred             CccccccChhhhcCchhhHHHHHH-hC
Q 038715           80 KKWKCDKCSKCYAVQSDWKAHTKI-CG  105 (332)
Q Consensus        80 k~~~C~~C~~~f~~~~~L~~H~~~-h~  105 (332)
                      +||.|..|.......++|+.|+++ |+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCccccccccccccchhhhhhhhcccc
Confidence            578888888888888888888887 64

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00038  Score=35.46  Aligned_cols=25  Identities=32%  Similarity=0.566  Sum_probs=13.3

Q ss_pred             CccccccChhhhcCchhhHHHHHHh
Q 038715           80 KKWKCDKCSKCYAVQSDWKAHTKIC  104 (332)
Q Consensus        80 k~~~C~~C~~~f~~~~~L~~H~~~h  104 (332)
                      +||+|..|+.+-...++|.+|+++|
T Consensus         2 kp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCcccccccchhcchhhHhhhhhcc
Confidence            3555555555555555555555543

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.54  E-value=0.001  Score=33.70  Aligned_cols=24  Identities=25%  Similarity=0.560  Sum_probs=21.6

Q ss_pred             CccCCCCCCCcccccccccccChhHHHHHHHHh
Q 038715          194 PYLSSVCGSNACAMAIGSSFTSSTALLQKAAEM  226 (332)
Q Consensus       194 p~~C~~C~~~~~~~~~~~~f~~~~~L~~H~~~~  226 (332)
                      ||+|..||         +.|-++.+|+.|.++.
T Consensus         1 pf~c~kcg---------kcyfrkenllehearn   24 (28)
T d2dlqa2           1 PFECPKCG---------KCYFRKENLLEHEARN   24 (28)
T ss_dssp             SCBCTTTC---------CBCSSHHHHHHHHHHC
T ss_pred             CCccccch---------hhhhhHhHHHHHHHHh
Confidence            79999999         9999999999998764

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.00047  Score=35.73  Aligned_cols=27  Identities=30%  Similarity=0.481  Sum_probs=21.6

Q ss_pred             CccccccChhhhcCchhhHHHHHH-hCC
Q 038715           80 KKWKCDKCSKCYAVQSDWKAHTKI-CGT  106 (332)
Q Consensus        80 k~~~C~~C~~~f~~~~~L~~H~~~-h~~  106 (332)
                      +||+|..|.....+.++|..|++. |++
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccceecccccCcchHHHHHHHHccC
Confidence            578888888888888888888887 754

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.00079  Score=34.78  Aligned_cols=24  Identities=33%  Similarity=0.650  Sum_probs=22.4

Q ss_pred             ceecccccccccChhHHHHHHHhc
Q 038715            5 RYICEVCHKGFQRDQNLQLHRKGH   28 (332)
Q Consensus         5 ~~~C~~C~k~f~~~~~L~~H~~~h   28 (332)
                      ||.|..|+..|.++.+|..||+.-
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            799999999999999999999754

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.0011  Score=34.28  Aligned_cols=25  Identities=32%  Similarity=0.654  Sum_probs=23.7

Q ss_pred             ceecccccccccChhHHHHHHHhcC
Q 038715            5 RYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         5 ~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      .|.|+.||......+-|+.|++.|+
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsHT   25 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTHT   25 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTS
T ss_pred             CccccccCcccCCHHHHHHHHHHhc
Confidence            4899999999999999999999998

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.47  E-value=0.00074  Score=33.96  Aligned_cols=26  Identities=27%  Similarity=0.345  Sum_probs=21.8

Q ss_pred             ecCCCCCCCCCCCCccCChhhHhhhhccccCCC
Q 038715           48 VCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEK   80 (332)
Q Consensus        48 ~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek   80 (332)
                      .|+.|       .+.|.++..|+.|-+.|+||+
T Consensus         2 qcp~c-------~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTC-------HKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTT-------CCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcch-------HHHHHHhHhhhhccccccCCC
Confidence            57888       888888888888888888874

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.14  E-value=0.0016  Score=36.80  Aligned_cols=27  Identities=30%  Similarity=0.621  Sum_probs=25.2

Q ss_pred             CCceecccccccccChhHHHHHHHhcC
Q 038715            3 TNRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         3 ~k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      .+.|+|..|++.|.+...|--|++.|.
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr   29 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHR   29 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhc
Confidence            467999999999999999999999996

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.11  E-value=0.0023  Score=32.92  Aligned_cols=27  Identities=33%  Similarity=0.775  Sum_probs=25.4

Q ss_pred             CCceecccccccccChhHHHHHHHhcC
Q 038715            3 TNRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         3 ~k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      |..|.|..|...|.+.-.|+.||-.|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvsht   28 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHT   28 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeeccc
Confidence            678999999999999999999999997

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.10  E-value=0.0014  Score=33.75  Aligned_cols=27  Identities=22%  Similarity=0.440  Sum_probs=19.5

Q ss_pred             cceecCCCCCCCCCCCCccCChhhHhhhhccc
Q 038715           45 GVYVCPKPNCVHHHPSRALGDLTGVKKHFCRK   76 (332)
Q Consensus        45 ~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h   76 (332)
                      .||+|+.=||     ++.|...+.|++|.++|
T Consensus         2 ~py~c~hegc-----dk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGC-----DKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTC-----CCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCc-----cccccCHHHHhhhhhcc
Confidence            4677777666     77777777777777665

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.09  E-value=0.0013  Score=33.28  Aligned_cols=24  Identities=29%  Similarity=0.571  Sum_probs=21.4

Q ss_pred             ceecccccccccChhHHHHHHHhc
Q 038715            5 RYICEVCHKGFQRDQNLQLHRKGH   28 (332)
Q Consensus         5 ~~~C~~C~k~f~~~~~L~~H~~~h   28 (332)
                      ||+|..||+.|.++.+|..|....
T Consensus         1 pf~c~kcgkcyfrkenllehearn   24 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEARN   24 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHHC
T ss_pred             CCccccchhhhhhHhHHHHHHHHh
Confidence            799999999999999999996543

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0018  Score=35.50  Aligned_cols=32  Identities=25%  Similarity=0.411  Sum_probs=25.8

Q ss_pred             ceecCCCCCCCCCCCCccCChhhHhhhhccccCC
Q 038715           46 VYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGE   79 (332)
Q Consensus        46 ~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~e   79 (332)
                      .|.|.+=+|.+.  ++.|.....|..|+|+|+||
T Consensus         2 ~y~C~W~~C~R~--~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           2 EFVCHWGGCSRE--LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCCCBTTCTTT--TCCCSSHHHHHHHTHHHHCC
T ss_pred             CeEEECCCCCCC--CCcchhHHHHHHHHhhcCCC
Confidence            467877777443  57899999999999999986

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=95.94  E-value=0.0019  Score=34.15  Aligned_cols=25  Identities=32%  Similarity=0.683  Sum_probs=21.9

Q ss_pred             ceecccccccccChhHHHHHHH-hcC
Q 038715            5 RYICEVCHKGFQRDQNLQLHRK-GHN   29 (332)
Q Consensus         5 ~~~C~~C~k~f~~~~~L~~H~~-~h~   29 (332)
                      ||.|.+|++.|.+..-|.+|++ .|.
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            7999999999999999999964 553

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.0021  Score=33.32  Aligned_cols=26  Identities=27%  Similarity=0.502  Sum_probs=23.7

Q ss_pred             CceecccccccccChhHHHHHHHhcC
Q 038715            4 NRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         4 k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      |||+|..|...-...++|+.|+++-+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccccccccccccchhhhhhhhccc
Confidence            69999999999999999999988754

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.91  E-value=0.0025  Score=31.97  Aligned_cols=23  Identities=35%  Similarity=0.756  Sum_probs=22.0

Q ss_pred             ecccccccccChhHHHHHHHhcC
Q 038715            7 ICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         7 ~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      +|+.|.+.|.++..|+.|-+.|+
T Consensus         2 qcp~c~k~f~skyylkvhnr~ht   24 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHT   24 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHS
T ss_pred             cCcchHHHHHHhHhhhhcccccc
Confidence            69999999999999999999997

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=95.79  E-value=0.0028  Score=31.24  Aligned_cols=24  Identities=17%  Similarity=0.322  Sum_probs=17.9

Q ss_pred             eecCCCCCCCCCCCCccCChhhHhhhhcccc
Q 038715           47 YVCPKPNCVHHHPSRALGDLTGVKKHFCRKH   77 (332)
Q Consensus        47 ~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~   77 (332)
                      |+|..|       .+.|..++.|..|+++|.
T Consensus         1 ykcglc-------ersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLC-------ERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSS-------CCBCSSHHHHHHHGGGTC
T ss_pred             Ccccch-------HHHHHHHHHHHHHHHhhc
Confidence            567777       777888888888877763

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.76  E-value=0.003  Score=31.16  Aligned_cols=22  Identities=32%  Similarity=0.694  Sum_probs=20.7

Q ss_pred             ceecccccccccChhHHHHHHH
Q 038715            5 RYICEVCHKGFQRDQNLQLHRK   26 (332)
Q Consensus         5 ~~~C~~C~k~f~~~~~L~~H~~   26 (332)
                      ||+|..|...|..+.+|+.|+-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999974

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.70  E-value=0.004  Score=30.67  Aligned_cols=24  Identities=25%  Similarity=0.544  Sum_probs=19.0

Q ss_pred             CccCCCCCCCcccccccccccChhHHHHHHHHh
Q 038715          194 PYLSSVCGSNACAMAIGSSFTSSTALLQKAAEM  226 (332)
Q Consensus       194 p~~C~~C~~~~~~~~~~~~f~~~~~L~~H~~~~  226 (332)
                      ||+|+.|.         +.|+.+..|..|+-+.
T Consensus         2 pykcsscs---------qqfmqkkdlqshmikl   25 (26)
T d2dlqa1           2 PYKCSSCS---------QQFMQKKDLQSHMIKL   25 (26)
T ss_dssp             SEECSSSC---------CEESSHHHHHHHHHHT
T ss_pred             CCcccHHH---------HHHHHHHHHHHHHHhc
Confidence            78888888         8888888888886543

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0041  Score=34.85  Aligned_cols=28  Identities=21%  Similarity=0.698  Sum_probs=25.1

Q ss_pred             CCCceec--ccccccccChhHHHHHHHhcC
Q 038715            2 ATNRYIC--EVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         2 ~~k~~~C--~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      .+|||.|  +-|+..|.+...|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            5799999  669999999999999998874

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.51  E-value=0.0035  Score=32.22  Aligned_cols=29  Identities=17%  Similarity=0.397  Sum_probs=22.4

Q ss_pred             CcceecCCCCCCCCCCCCccCChhhHhhhhccccCC
Q 038715           44 KGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGE   79 (332)
Q Consensus        44 ~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~e   79 (332)
                      ++.|.|..|       ...|+..-.|..|+-.|+||
T Consensus         2 eqvftcs~c-------qe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVC-------QETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSS-------CCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHH-------HHHHHHHHhheeeeecccCC
Confidence            456778888       88888888888888888765

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.39  E-value=0.0047  Score=34.81  Aligned_cols=30  Identities=13%  Similarity=0.283  Sum_probs=24.4

Q ss_pred             CcceecCCCCCCCCCCCCccCChhhHhhhhccccCCC
Q 038715           44 KGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGEK   80 (332)
Q Consensus        44 ~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~ek   80 (332)
                      .+.|.|..|       ++.|.+-..|--|++.|..++
T Consensus         3 ~r~~~C~~C-------~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           3 PRSYTCSFC-------KREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSSEECTTT-------CCEESSHHHHHHHHHTTCCSC
T ss_pred             CCccCCCCC-------CCccCCcccccchHhhhcchH
Confidence            456888888       888888888888888887654

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.0032  Score=33.32  Aligned_cols=27  Identities=26%  Similarity=0.557  Sum_probs=13.5

Q ss_pred             ceecCCCCCCCCCCCCccCChhhHhhhh-cccc
Q 038715           46 VYVCPKPNCVHHHPSRALGDLTGVKKHF-CRKH   77 (332)
Q Consensus        46 ~~~C~~C~C~~~~~~~~f~~~~~L~~H~-~~h~   77 (332)
                      ||.|+.-||     .+.|...+.-..|+ |+|.
T Consensus         2 PY~C~~~gC-----~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           2 PYMCEHEGC-----SKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CEECCSTTC-----CCEESSSSTTHHHHHHTTC
T ss_pred             CccccCCCh-----hhhhcchhhhhhhcccccc
Confidence            455555444     55555555555554 4443

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.28  E-value=0.0043  Score=31.99  Aligned_cols=26  Identities=31%  Similarity=0.636  Sum_probs=23.5

Q ss_pred             Cceecc--cccccccChhHHHHHHHhcC
Q 038715            4 NRYICE--VCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         4 k~~~C~--~C~k~f~~~~~L~~H~~~h~   29 (332)
                      +||+|.  -|.|.|.+...|.+|..+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~tht   28 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHT   28 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHH
T ss_pred             CCcCcccccccccchhhhhhhhhhcccc
Confidence            689995  49999999999999998886

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.95  E-value=0.0089  Score=29.53  Aligned_cols=23  Identities=39%  Similarity=0.715  Sum_probs=20.8

Q ss_pred             ceecccccccccChhHHHHHHHh
Q 038715            5 RYICEVCHKGFQRDQNLQLHRKG   27 (332)
Q Consensus         5 ~~~C~~C~k~f~~~~~L~~H~~~   27 (332)
                      .|.|+.|-+.|+++.++..|.++
T Consensus         1 vypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           1 VYPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHH
T ss_pred             CcCCchhhHHhccccCceEEEEE
Confidence            38999999999999999999764

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.84  E-value=0.0058  Score=31.50  Aligned_cols=30  Identities=20%  Similarity=0.530  Sum_probs=22.9

Q ss_pred             cceecCCCCCCCCCCCCccCChhhHhhhhccccCC
Q 038715           45 GVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGE   79 (332)
Q Consensus        45 ~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~e   79 (332)
                      +||.|..-||     .+.|.+...|.+|..+|+||
T Consensus         1 ~pfpc~~egc-----~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGC-----EKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSC-----CCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccc-----cccchhhhhhhhhhccccCC
Confidence            4677777666     88888888888888888764

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.0056  Score=32.33  Aligned_cols=26  Identities=31%  Similarity=0.761  Sum_probs=23.4

Q ss_pred             Cceeccc--ccccccChhHHHHHH-HhcC
Q 038715            4 NRYICEV--CHKGFQRDQNLQLHR-KGHN   29 (332)
Q Consensus         4 k~~~C~~--C~k~f~~~~~L~~H~-~~h~   29 (332)
                      |||.|+.  |.|.|...++-..|+ ++|.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccccc
Confidence            6999987  999999999999997 7875

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.0093  Score=33.35  Aligned_cols=30  Identities=13%  Similarity=0.453  Sum_probs=22.2

Q ss_pred             CCcceecCCCCCCCCCCCCccCChhhHhhhhcccc
Q 038715           43 KKGVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKH   77 (332)
Q Consensus        43 ~~~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~   77 (332)
                      .++||.|...||     +..|.+...|..|...|.
T Consensus         3 ddkPF~C~~pGC-----~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGC-----GQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTT-----CCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCc-----cccccchHHHHHhhhhhe
Confidence            467888877666     788888888887776664

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.58  E-value=0.0073  Score=35.53  Aligned_cols=26  Identities=27%  Similarity=0.521  Sum_probs=23.7

Q ss_pred             CceecccccccccChhHHHHHHHhcC
Q 038715            4 NRYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         4 k~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      -.|.|..|||.|+....|+.|...|-
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            45899999999999999999998884

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.013  Score=29.70  Aligned_cols=24  Identities=21%  Similarity=0.599  Sum_probs=21.7

Q ss_pred             ceecccccccccChhHHHHHHHhc
Q 038715            5 RYICEVCHKGFQRDQNLQLHRKGH   28 (332)
Q Consensus         5 ~~~C~~C~k~f~~~~~L~~H~~~h   28 (332)
                      .|+|++|+..-.++++|..|++.-
T Consensus         2 k~qcphc~tiiarksdlrvhlrnl   25 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQ   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHT
T ss_pred             CccCCcchhheeehhhhhHHhhhc
Confidence            589999999999999999998753

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.08  E-value=0.022  Score=33.41  Aligned_cols=28  Identities=29%  Similarity=0.458  Sum_probs=25.2

Q ss_pred             CCccCCCCCCCcccccccccccChhHHHHHHHHhccc
Q 038715          193 KPYLSSVCGSNACAMAIGSSFTSSTALLQKAAEMGTM  229 (332)
Q Consensus       193 ~p~~C~~C~~~~~~~~~~~~f~~~~~L~~H~~~~~~~  229 (332)
                      -.|.|..|+         +.|+....|.+|.|+++..
T Consensus         5 ~l~pCG~Cg---------K~Ftd~~rLr~HEAQHG~t   32 (53)
T d2eppa1           5 GILPCGLCG---------KVFTDANRLRQHEAQHGVT   32 (53)
T ss_dssp             CCCCCTTTC---------CCCSCHHHHHHHHHHHTTT
T ss_pred             ceeeccccc---------cccCCHHHHhHhHHhcCcc
Confidence            358899999         9999999999999999873

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.13  E-value=0.039  Score=27.12  Aligned_cols=24  Identities=17%  Similarity=0.304  Sum_probs=18.9

Q ss_pred             ccCCCCCCCcccccccccccChhHHHHHHHHhc
Q 038715          195 YLSSVCGSNACAMAIGSSFTSSTALLQKAAEMG  227 (332)
Q Consensus       195 ~~C~~C~~~~~~~~~~~~f~~~~~L~~H~~~~~  227 (332)
                      |.|+.|-         +.|+++.++..|.+..+
T Consensus         2 ypcp~cf---------keftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCF---------KEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTC---------CEESCHHHHHHHHHHHT
T ss_pred             cCCchhh---------HHhccccCceEEEEEec
Confidence            6788888         88888888888877543

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.88  E-value=0.039  Score=29.68  Aligned_cols=27  Identities=22%  Similarity=0.525  Sum_probs=22.4

Q ss_pred             CCccCCCCCCCcccccccccccChhHHHHHHHHhcc
Q 038715          193 KPYLSSVCGSNACAMAIGSSFTSSTALLQKAAEMGT  228 (332)
Q Consensus       193 ~p~~C~~C~~~~~~~~~~~~f~~~~~L~~H~~~~~~  228 (332)
                      ..|.|+.|+         +.|+++..+.+|+.....
T Consensus         3 ~afvcskcg---------ktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           3 AAFVCSKCG---------KTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CCEECSSSC---------CEESCHHHHHHHHHHCCC
T ss_pred             ceeeecccc---------cchhcchHHHHHhhhcCC
Confidence            358899999         999999999999876543

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.85  E-value=0.04  Score=27.79  Aligned_cols=25  Identities=8%  Similarity=0.157  Sum_probs=17.0

Q ss_pred             CccCCCCCCCcccccccccccChhHHHHHHHHhc
Q 038715          194 PYLSSVCGSNACAMAIGSSFTSSTALLQKAAEMG  227 (332)
Q Consensus       194 p~~C~~C~~~~~~~~~~~~f~~~~~L~~H~~~~~  227 (332)
                      .|+|+.|+         ....+++.|..|++..+
T Consensus         2 k~qcphc~---------tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           2 KFHCPHCD---------TVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             SEECSSSS---------CEESSHHHHHHHHHHTS
T ss_pred             CccCCcch---------hheeehhhhhHHhhhcc
Confidence            36777777         66777777777766554

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.97  E-value=0.065  Score=27.08  Aligned_cols=25  Identities=20%  Similarity=0.401  Sum_probs=23.2

Q ss_pred             ceecccccccccChhHHHHHHHhcC
Q 038715            5 RYICEVCHKGFQRDQNLQLHRKGHN   29 (332)
Q Consensus         5 ~~~C~~C~k~f~~~~~L~~H~~~h~   29 (332)
                      |-+|+.|.....++..|+.|.++|.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            5689999999999999999999995

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=91.46  E-value=0.028  Score=29.34  Aligned_cols=30  Identities=23%  Similarity=0.557  Sum_probs=25.1

Q ss_pred             cceecCCCCCCCCCCCCccCChhhHhhhhccccCC
Q 038715           45 GVYVCPKPNCVHHHPSRALGDLTGVKKHFCRKHGE   79 (332)
Q Consensus        45 ~~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~h~~e   79 (332)
                      +.|.|...+|     +..|.....|..|+..|+||
T Consensus         2 k~~iCsf~dC-----~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADC-----GAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGG-----CCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCc-----chhhccchhhhHHhhhhcCC
Confidence            4678877666     89999999999999999875

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.09  E-value=0.11  Score=27.94  Aligned_cols=28  Identities=25%  Similarity=0.600  Sum_probs=24.0

Q ss_pred             CceecccccccccChhHHHHHHHhcCCC
Q 038715            4 NRYICEVCHKGFQRDQNLQLHRKGHNLP   31 (332)
Q Consensus         4 k~~~C~~C~k~f~~~~~L~~H~~~h~~~   31 (332)
                      ..|.|..|+|.|.+...+.+|.....+|
T Consensus         3 ~afvcskcgktftrrntm~rha~nc~g~   30 (37)
T d1x6ha1           3 AAFVCSKCGKTFTRRNTMARHADNCAGP   30 (37)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHHCCCC
T ss_pred             ceeeecccccchhcchHHHHHhhhcCCC
Confidence            3589999999999999999998776643

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.32  E-value=0.1  Score=26.37  Aligned_cols=17  Identities=12%  Similarity=0.010  Sum_probs=9.9

Q ss_pred             CCccCChhhHhhhhccc
Q 038715           60 SRALGDLTGVKKHFCRK   76 (332)
Q Consensus        60 ~~~f~~~~~L~~H~~~h   76 (332)
                      +....++..|+.|.++|
T Consensus         9 syscsskaalrvh~rih   25 (28)
T d1x5wa1           9 SYSCSSKAALRIHERIH   25 (28)
T ss_dssp             SCEESSHHHHHHHHGGG
T ss_pred             ccccCcHHHHHHhhccc
Confidence            55555555666555555

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=89.64  E-value=0.092  Score=28.28  Aligned_cols=27  Identities=22%  Similarity=0.471  Sum_probs=23.5

Q ss_pred             CCCceecccccccccChhHHHHHHHhc
Q 038715            2 ATNRYICEVCHKGFQRDQNLQLHRKGH   28 (332)
Q Consensus         2 ~~k~~~C~~C~k~f~~~~~L~~H~~~h   28 (332)
                      |+..|+|..|.+.|+..+++.+|-.+.
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtS   31 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTS   31 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHH
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhh
Confidence            467899999999999999999996544

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.11  E-value=0.11  Score=32.82  Aligned_cols=36  Identities=6%  Similarity=0.057  Sum_probs=26.3

Q ss_pred             CCCCceecccccccccCcccccccccC-CCCccCCCCC
Q 038715          165 NSLRPLSMSSVGVMVSSNLDPILTSRV-SKPYLSSVCG  201 (332)
Q Consensus       165 ~~~k~~~C~~C~k~F~~~~~L~~H~~~-~~p~~C~~C~  201 (332)
                      +....|.|+.|+++|+.-..+.. +-- ...|.|..|+
T Consensus        10 ~~~~~y~Cp~C~~~ys~Lda~~L-~d~~~~~F~C~~C~   46 (62)
T d1vd4a_          10 TNRASFKCPVCSSTFTDLEANQL-FDPMTGTFRCTFCH   46 (62)
T ss_dssp             CSSSEEECSSSCCEEEHHHHHHH-EETTTTEEBCSSSC
T ss_pred             ccCCceECCCCCCCcchhhHHHh-cCcCCCeEEecCCC
Confidence            34457999999999988766544 222 6779999998

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=83.33  E-value=0.27  Score=26.02  Aligned_cols=25  Identities=24%  Similarity=0.531  Sum_probs=22.0

Q ss_pred             CceecccccccccChhHHHHHHHhc
Q 038715            4 NRYICEVCHKGFQRDQNLQLHRKGH   28 (332)
Q Consensus         4 k~~~C~~C~k~f~~~~~L~~H~~~h   28 (332)
                      ..|.|.-||-.|.+.+.|..|+...
T Consensus         7 arf~c~pcgirfss~stleahqtyy   31 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQAYY   31 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTTTT
T ss_pred             cceeccccceeecChhHHHhhhhee
Confidence            4689999999999999999998654

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=83.11  E-value=0.51  Score=27.33  Aligned_cols=27  Identities=19%  Similarity=0.396  Sum_probs=23.8

Q ss_pred             CCCceecccccccccChhHHHHHHHhc
Q 038715            2 ATNRYICEVCHKGFQRDQNLQLHRKGH   28 (332)
Q Consensus         2 ~~k~~~C~~C~k~f~~~~~L~~H~~~h   28 (332)
                      .+.|-.|+.|+....+..+|++|+..-
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel~   47 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLELR   47 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHHH
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHH
Confidence            467899999999999999999997654

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.75  E-value=0.39  Score=24.18  Aligned_cols=22  Identities=27%  Similarity=0.600  Sum_probs=19.2

Q ss_pred             ecc--cccccccChhHHHHHHHhc
Q 038715            7 ICE--VCHKGFQRDQNLQLHRKGH   28 (332)
Q Consensus         7 ~C~--~C~k~f~~~~~L~~H~~~h   28 (332)
                      .|+  -|+|.|...+.++.|+.+|
T Consensus         3 ~CphkgC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           3 ACPHKGCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHGGG
T ss_pred             cCCcccHHHHhhchHHHHHHhhcc
Confidence            465  4999999999999999887

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.70  E-value=0.12  Score=33.28  Aligned_cols=24  Identities=4%  Similarity=-0.184  Sum_probs=21.0

Q ss_pred             CceecccccccccCcccccccccC
Q 038715          168 RPLSMSSVGVMVSSNLDPILTSRV  191 (332)
Q Consensus       168 k~~~C~~C~k~F~~~~~L~~H~~~  191 (332)
                      -.|-|-.|+|.|.+...|..|+++
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CEEecccccCccCCHHHHHHHHcc
Confidence            358899999999999999999887

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=80.93  E-value=0.41  Score=27.75  Aligned_cols=30  Identities=13%  Similarity=0.286  Sum_probs=18.8

Q ss_pred             CCCccccccChhhhcCchhhHHHHHH-hCCC
Q 038715           78 GEKKWKCDKCSKCYAVQSDWKAHTKI-CGTR  107 (332)
Q Consensus        78 ~ek~~~C~~C~~~f~~~~~L~~H~~~-h~~k  107 (332)
                      .+.|-.|++|+.......+|.+|... |-.+
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel~hf~k   51 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLELRHFAK   51 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHHHTSCS
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHHhhcc
Confidence            34566677776666666677777666 5333

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.65  E-value=0.12  Score=26.26  Aligned_cols=14  Identities=36%  Similarity=0.688  Sum_probs=8.9

Q ss_pred             cCCccccchhHhhc
Q 038715          113 CGIIFSSQNLAASG  126 (332)
Q Consensus       113 C~k~f~~~~~l~~h  126 (332)
                      ||+.|+++..|.+|
T Consensus         8 c~kifsnrqylnhh   21 (30)
T d2dlka1           8 CGRIFSNRQYLNHH   21 (30)
T ss_dssp             TCCEESSHHHHHHH
T ss_pred             chhhhccHHHHHhH
Confidence            66666666666643