Citrus Sinensis ID: 038775

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630
Protein Sequence
MEMAGPDHVVLSVDQQNANNPSMQTELNREPNKILPLEKNSLSFSAPDLHQIPATRKQTLHRLSFSKPKSRLLELNYPLTAHNKTIPESNEIEPFLDDNNNSNIYSTHVDDNEWDKELEDDSEDEDVGTESKQRKEIGSPIGDFLRNCIRNCMWLGLVLRAWTCIFNEKLHKKNKMLEKVFRALVAVSLGATIWLIKIVLVKVLASSFYVTTYFNRMKESVFHHYILETLSGPPKMEGLMANDEEKKQLKKKRRKPNSNLSGSKSLPANWEEGSGRKEIDMEKLRKLSMETTASTWSMKRLVSYIKSSEKPLQPNVALMTFFKRVEVHSIFPLFEGALEIGRVTKHLFRNWAKITSTLVMVIIIVVSLLVMKLATTQVVFSVLTQLVLVGWLFPNAFLLTKTKSNFCRPEMSDSINLTVDISTSMQTIIALKKAVQINTTTRFPSIFEFSSYSTPTAFIIHCILRANHCNPKHSVTVKERAELNKIRMRLGVQHTINHQTCAERSIRTSELILELKKIFENLGIKCHLPPQEIHITQLNLNNWTMPSHSLRQGKSLAVLLAVLLKSIFNQSQILKSMIENQSACLHTTSLKSLPWDSAYIIPSSEEINLRPPPKPLKIGNYLITIKKKHL
Secondary Structure (PSIPRED)
cccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHccccccccccHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccccEEEEEEEEcHHHHHHHHHccccEEEccccccccEEEEEcccHHHHHHHHHHcccccccccEEEEEcccccEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccEEEccccEEEEEccccccccccccHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHccccEEEccccccccccccEEccccccccccccccccccccEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEccccccccccccccccccccccccccccccccccHHHccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccHHHHHHHccccccccccccccccccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHccccHHHHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEcccccccEEEEcccEEEHHHHHHHHHHHHHHccccEHcEEccccccccEEEEEcccccHHHHHcHHccccccEEEEEEcccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccEEEcccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccccccEEEEcccccEccccccccccccHEEEEEHHccc
Coil and Loop (DISEMBL)
MEMAGPDHVVLSVDqqnannpsmqtelnrepnkilpleknslsfsapdlhqipatrkqtlhrlsfskpksrllelnypltahnktipesneiepflddnnnsniysthvddnewdkeleddsededvgteskqrkeigspiGDFLRNCIRNCMWLGLVLRAWTCIFNEKLHKKNKMLEKVFRALVAVSLGATIWLIKIVLVKVLASSFYVTTYFNRMKESVFHHYILetlsgppkmeglmaNDEEKKQLKkkrrkpnsnlsgskslpanweegsgrkeiDMEKLRKLSMETTASTWSMKRLVSYIKssekplqpnvALMTFFKRVevhsifplfeGALEIGRVTKHLFRNWAKITSTLVMVIIIVVSLLVMKLATTQVVFSVLTQLVLVGWlfpnaflltktksnfcrpemsdsinltVDISTSMQTIIALKKAVQintttrfpsifefssystptAFIIHCILranhcnpkhsvTVKERAELNKIRMRLGVQHTINHQTCAERSIRTSELILELKKIFENlgikchlppqeihitqlnlnnwtmpshslrqGKSLAVLLAVLLKSIFNQSQILKSMIENqsaclhttslkslpwdsayiipsseeinlrpppkplkignYLITIKKKHL
Flexible Loop (DISEMBL)
MEMAGPDHVVLSVDQQNANNPSMQTELNREPNKILPLEKNSLSFSAPDLHQIPATRKQTLHRLSFSKPKSRLLELNYPLTAHNKTIPESNEIEPFLDDNNNSNIYSTHVDDNEWDKELEDDSededvgteskqrkeigspigdfLRNCIRNCMWLGLVLRAWTCIFNEKLHKKNKMLEKVFRALVAVSLGATIWLIKIVLVKVLASSFYVTTYFNRMKESVFHHYILETLSGPPKMEGLMANDEEKKqlkkkrrkpnsnlsgskslpanweegsgrkeidmekLRKLSmettastwsmKRLVSYIkssekplqPNVALMTFFKRVEVHSIFPLFEGALEIGRVTKHLFRNWAKITSTLVMVIIIVVSLLVMKLATTQVVFSVLTQLVLVGWLFPNAFLLTKTKSNFCRPEMSDSINLTVDISTSMQTIIALKKAVQINTTTRFPSIFEFSSYSTPTAFIIHCILRANHCNPKHSVTVKERAELNKIRMRlgvqhtinhqtcaersiRTSELILELKKIFENLGIKCHLPPQEIHITQLNLNNWTMPSHSLRQGKSLAVLLAVLLKSIFNQSQILKSMIENQSACLHTTSLKSLPWDSAYIIPSseeinlrpppkplkignylitikkkhl
Low Complexity Region (SEG)
MEMAGPDHVVLSVDQQNANNPSMQTELNREPNKILPLEKNSLSFSAPDLHQIPATRKQTLHRLSFSKPKSRLLELNYPLTAHNKTIPESNEIEPFLDDNNNSNIYSTHVDDNewdkeleddsededVGTESKQRKEIGSPIGDFLRNCIRNCMWLGLVLRAWTCIFNEKLHKKNKMLEKVFRALVAVSLGATIWLIKIVLVKVLASSFYVTTYFNRMKESVFHHYILETLSGPPKMEGLMANDEEkkqlkkkrrkPNSNLSGSKSLPANWEEGSGRKEIDMEKLRKLSMETTASTWSMKRLVSYIKSSEKPLQPNVALMTFFKRVEVHSIFPLFEGALEIGRVTKHLFRNWAKitstlvmviiivvsllvmKLATTQVVFSVLTQLVLVGWLFPNAFLLTKTKSNFCRPEMSDSINLTVDISTSMQTIIALKKAVQINTTTRFPSIFEFSSYSTPTAFIIHCILRANHCNPKHSVTVKERAELNKIRMRLGVQHTINHQTCAERSIRTSELILELKKIFENLGIKCHLPPQEIHITQLNLNNWTMPSHSLRQGkslavllavllksIFNQSQILKSMIENQSACLHTTSLKSLPWDSAYIIPSSEEINLRPPPKPLKIGNYLITIKKKHL
Disordered region (IsUnstruct)
**************************************************************************LNY**************************************************************PIGDFLRNCIRNCMWLGLVLRAWTCIFNEKLHKKNKMLEKVFRALVAVSLGATIWLIKIVLVKVLASSFYVTTYFNRMKESVFHHYILETL*****************************************************************WSMKRLVSYIK****PLQPNVALMTFFKRVEVHSIFPLFEGALEIGRVTKHLFRNWAKITSTLVMVIIIVVSLLVMKLATTQVVFSVLTQLVLVGWLFPNAFLLTKTKSNFCRPEMSDSINLTVDISTSMQTIIALKKAVQINTTTRFPSIFEFSSYSTPTAFIIHCILRANHCNPKHSVTVKERAELNKIRMRLGVQHTINHQTCAERSIRTSELILELKKIFENLGIKCHLPPQEIHITQLNLNNWTMPSHSLRQGKSLAVLLAVLLKSIFNQSQILKSMIENQSACLHTTSLKSLPWDSAYIIPS************LKIGNYLITI*****
Disordered Region (DISOPRED)
******D***************************************************TL***********LL**************************************************************EIGSPIGDFLRNCIRNCMWLGLVLRAWTCIFNEKLHKKNKMLEKVFRALVAVSLGATIWLIKIVLVKVLASSFYVTTYFNRMKESVFHHYILETLSG*******************************************************************RLVSYIKSSEKPLQPNVALMTFFKRVEVHSIFPLFEGALEIGRVTKHLFRNWAKITSTLVMVIIIVVSLLVMKLATTQVVFSVLTQLVLVGWLFPNAFLLTKTKSNFCRPEMSDSINLTVDISTSMQTIIALKKAVQINTTTRFPSIFEFSSYSTPTAFIIHCILRANHCNPKHSVTVKERAELNKIRMRLGVQHTINHQTCAERSIRTSELILELKKIFENLGIKCHLPPQEIHIT********************AVLLAVLLKSIFNQSQILKSMIENQSACLHTTSLKSLPWDSAYIIPSSEEINLRPPPKPLKIGNYLITIKKK**
Disordered Region (DISEMBL)
MEMAGPDHVVLSVDQQNANNPSMQTELNREPNKILPLEKNSLSFSAPDLHQIPATRKQTLHRLSFSKPKSRLLELNYPLTAHNKTIPESNEIEPFLDDNNNSNIYSTHVDDNEWD*******************KEIGSPIGDFLRNCIRNCMWLGLVLRAWTCIFNEKLHKKNKMLEKVFRALVAVSLGATIWLIKIVLVKVLASSFYVTTYFNRMKESVFHHYILETLSGPPKMEGLMAND******************GSKSLPANWEEGSGRKEIDMEKLRKLSMETTASTWSMKRLVSYIKSSEKPLQPNVALMTFFKRVEVHSIFPLFEGALEIGRVTKHLFRNWAKITSTLVMVIIIVVSLLVMKLATTQVVFSVLTQLVLVGWLFPNAFLLTKTKSNFCRPEMSDSINLTVDISTSMQTIIALKKAVQINTTTRFPSIFEFSSYSTPTAFIIHCILRANHCNPKHSVTVKERAELNKIRMRLGVQHTINHQTCAERSIRTSELILELKKIFENLGIKCHLPPQEIHITQLNLNNWTMPSHSLRQGKSLAVLLAVLLKSIFNQSQILKSMIENQSACLHTTSLKSLPWDSAYIIPSSEEINLRPPPKPLKIGNYLITIKKKHL
Disordered Region (DISPRO)
*****PDHVVLSVDQQ*****************I********SFSAPDLHQIPATRKQTLHRLSFSKPKSRLLELNYPLTAHN**********************************************ESKQRKEIGSPIGDFLRNCIRNCMWLGLVLRAWTCIFNEKLHKKNKMLEKVFRALVAVSLGATIWLIKIVLVKVLASSFYVTTYFNRMKESVFHHYILETLSGPPKMEGL***********************************GRKEIDMEKLRKLSMETTASTWSMKRLVSYIKSSEKPLQPNVALMTFFKRVEVHSIFPLFEGALEIGRVTKHLFRNWAKITSTLVMVIIIVVSLLVMKLATTQVVFSVLTQLVLVGWLFPNAFLLTKTKSNFCRPEMSDSINLTVDISTSMQTIIALKKAVQINTTTRFPSIFEFSSYSTPTAFIIHCILRANHCNPKHSVTVKERAELNKIRMRLGVQHTINHQTCAERSIRTSELILELKKIFENLGIKCHLPPQEIHITQLNLNNW*********GKSLAVLLAVLLKSIFNQSQILKSMIENQSACLHTTSLKSLPWDSAYIIPSSEEINLRPPPKPLKIGNYLITIKKK**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEMAGPDHVVLSVDQQNANNPSMQTELNREPNKILPLEKNSLSFSAPDLHQIPATRKQTLHRLSFSKPKSRLLELNYPLTAHNKTIPESNEIEPFLDDNNNSNIYSTHVDDNEWDKELEDDSEDEDVGTESKQRKEIGSPIGDFLRNCIRNCMWLGLVLRAWTCIFNEKLHKKNKMLEKVFRALVAVSLGATIWLIKIVLVKVLASSFYVTTYFNRMKESVFHHYILETLSGPPKMEGLMANDEEKKQLKKKRRKPNSNLSGSKSLPANWEEGSGRKEIDMEKLRKLSMETTASTWSMKRLVSYIKSSEKPLQPNVALMTFFKRVEVHSIFPLFEGALEIGRVTKHLFRNWAKITSTLVMVIIIVVSLLVMKLATTQVVFSVLTQLVLVGWLFPNAFLLTKTKSNFCRPEMSDSINLTVDISTSMQTIIALKKAVQINTTTRFPSIFEFSSYSTPTAFIIHCILRANHCNPKHSVTVKERAELNKIRMRLGVQHTINHQTCAERSIRTSELILELKKIFENLGIKCHLPPQEIHITQLNLNNWTMPSHSLRQGKSLAVLLAVLLKSIFNQSQILKSMIENQSACLHTTSLKSLPWDSAYIIPSSEEINLRPPPKPLKIGNYLITIKKKHL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	630	2.2.26 [Sep-21-2011]
Q9LYG9	734	Mechanosensitive ion chan	yes	no	0.604	0.519	0.280	1e-41
F4IME1	849	Mechanosensitive ion chan	no	no	0.623	0.462	0.270	2e-33
F4IME2	908	Mechanosensitive ion chan	no	no	0.626	0.435	0.265	2e-30
Q9LPG3	881	Mechanosensitive ion chan	no	no	0.619	0.442	0.248	6e-30
Q84M97	742	Mechanosensitive ion chan	no	no	0.561	0.477	0.228	2e-27
Q9LH74	881	Mechanosensitive ion chan	no	no	0.319	0.228	0.302	1e-25
Q9SYM1	856	Mechanosensitive ion chan	no	no	0.319	0.234	0.321	2e-23

>sp|Q9LYG9|MSL10_ARATH Mechanosensitive ion channel protein 10 OS=Arabidopsis thaliana GN=MSL10 PE=1 SV=1

 Score =  171 bits (434), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 141/503 (28%), Positives = 237/503 (47%), Gaps = 122/503 (24%)

Query: 145 LRNCIRNCMWLGLVLRAWTCIFNEKLHKK---NKMLEKVFRALVAVSLGATIWLIKIVLV 201
           L+  ++  +WL L+L AW  +FN  + +     K+L+ + R L+++  GA  WL+K +L+
Sbjct: 246 LKKSVQVFIWLCLILVAWILLFNHDVKRSPAATKVLKCITRTLISILTGAFFWLVKTLLL 305

Query: 202 KVLASSFYVTTYFNRMKESVFHHYILETLSGPPKMEGLMANDEEKKQLKKKRRKPNSNLS 261
           K+LA++F V  +F+R+++SVFH Y+L+TLSG P ME          + ++  R+P+   +
Sbjct: 306 KILAANFNVNNFFDRIQDSVFHQYVLQTLSGLPLME----------EAERVGREPS---T 352

Query: 262 GSKSLPANWEEGS--GRKEIDMEKLRKLSMETTASTWSMKRLVSYIKSS----------- 308
           G  S     ++G+   +K IDM K+ K+  E   S W+M+ L+  +++S           
Sbjct: 353 GHLSFATVVKKGTVKEKKVIDMGKVHKMKRE-KVSAWTMRVLMEAVRTSGLSTISDTLDE 411

Query: 309 ----EKPLQP-------------------NVA-----------LMTFFKRVEVHSIFPLF 334
               E   Q                    NVA           L+ F  + EV  +FPLF
Sbjct: 412 TAYGEGKEQADREITSEMEALAAAYHVFRNVAQPFFNYIEEEDLLRFMIKEEVDLVFPLF 471

Query: 335 EGALEIGRVTKHLFRNWA-------------------------KITSTLVMVIIIVVSLL 369
           +GA E GR+T+  F  W                          K+ + ++MV+ +V+ LL
Sbjct: 472 DGAAETGRITRKAFTEWVVKVYTSRRALAHSLNDTKTAVKQLNKLVTAILMVVTVVIWLL 531

Query: 370 VMKLATTQVVFSVLTQLVLVGWLFPN---------AFLLTKTKSNFCRPEMSDSINLTVD 420
           ++++ATT+V+    TQLV + ++  +          F+      +     + D + + V+
Sbjct: 532 LLEVATTKVLLFFSTQLVALAFIIGSTCKNLFESIVFVFVMHPYDVGDRCVVDGVAMLVE 591

Query: 421 ISTSMQTII------------ALKKAVQINTTTRFPSI---FEFS-SYSTPTAFIIHCIL 464
               + T+             A+     I+   R P++    EFS S+STP + I H   
Sbjct: 592 EMNLLTTVFLKLNNEKVYYPNAVLATKPISNYFRSPNMGETVEFSISFSTPVSKIAHLKE 651

Query: 465 RA--------NHCNPKHSVTVKERAELNKIRMRLGVQHTINHQTCAERSIRTSELILELK 516
           R          H  P HSV VKE   +NK++M L   HTI  Q   ER++R +EL L +K
Sbjct: 652 RIAEYLEQNPQHWAPVHSVVVKEIENMNKLKMALYSDHTITFQENRERNLRRTELSLAIK 711

Query: 517 KIFENLGIKCHLPPQEIHITQLN 539
           ++ E+L I   L PQ+I++T+ N
Sbjct: 712 RMLEDLHIDYTLLPQDINLTKKN 734

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.
Arabidopsis thaliana (taxid: 3702)

>sp|F4IME1|MSL7_ARATH Mechanosensitive ion channel protein 7 OS=Arabidopsis thaliana GN=MSL7 PE=3 SV=1

 Score =  144 bits (364), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 142/525 (27%), Positives = 235/525 (44%), Gaps = 132/525 (25%)

Query: 145 LRNCIRNCMWLGLVLRAWTCIFNEKLHKKNK--MLEKVFRALVAVSLGATIWLIKIVLVK 202
           ++  ++NC+WLGLVL AW  +F++K+ K+ +  +L  + + LV   L   +WLIK ++VK
Sbjct: 311 VKTAVQNCLWLGLVLLAWHFLFDKKVEKETQSDVLLLMSKILVCFLLSTVLWLIKTLVVK 370

Query: 203 VLASSFYVTTYFNRMKESVFHHYILETLSGPPKMEGLMANDEEKKQLKK--KRRKPNSNL 260
           VLASSF+V+TYF+R++E++FHHY++ETLSGPP +E     +EE +   +  K +K  ++L
Sbjct: 371 VLASSFHVSTYFDRIQEALFHHYLIETLSGPPMLELSRIEEEEDRTQDEIYKMQKGGADL 430

Query: 261 SGSKSLPANWEEGSGR----------------KEIDMEKLRKLSMETTASTWSMKRLVSY 304
           S      A  +E SG                   I M+ L K++ +   S W+MKRL+  
Sbjct: 431 SPELCSAAFPQEKSGSTMNMKFSPIIPKTGSDNGITMDDLHKMN-QKNVSAWNMKRLMKI 489

Query: 305 IKS------SEKPLQ-------------------------PNVA-----------LMTFF 322
           +++       E+ LQ                          NVA           LM F 
Sbjct: 490 VRNVSLSTLDEQALQNTCEDESTRQIRSEKEAKAAARKIFKNVAQPGTKHIYLEDLMRFL 549

Query: 323 KRVEVHSIFPLFEGALEIGRVTKHLFRNW--------------AKITSTLVMVIIIVVSL 368
           +  E      LFEGAL   ++TK   +NW                 T T V  +  ++S 
Sbjct: 550 RVDEAMKTMCLFEGALVTKKITKSALKNWLVNAFRERRALALTLNDTKTAVNKLHHMISF 609

Query: 369 LV-----------MKLATTQVVFSVLTQLVLVGWLFPNA---------FLLTKTKSNFCR 408
           L            +++AT++ +  + +Q+VL+ ++F N+         FL      +   
Sbjct: 610 LTAIVIIVIWLILLEIATSKYLLFLTSQVVLLAFMFGNSLKTVFESIIFLFIIHPYDVGD 669

Query: 409 PEMSDSINLTVDISTSMQT--------------IIALKKAVQINTTTRFPSIFEFSS--- 451
             + D++ + V+    + T              I+  +KA  I+   R P + +  +   
Sbjct: 670 RLLIDTVEMVVEEMNILTTVFLRADNLKIVYPNILLWQKA--IHNYNRSPDMGDEVTCCV 727

Query: 452 -YSTPTAFIIHCILRAN--------HCNPKHSVTVKERAELNKIRMRLGVQHTINHQTCA 502
             +TP   I     R +        +  PK  V VK+  +LN +R+ + + H INHQ   
Sbjct: 728 HITTPPEKIAAIKQRISSYIDSKPEYWYPKADVIVKDVEDLNIVRIAIWLCHKINHQNMG 787

Query: 503 ERSIRTSELILELKKIFENLGIKCHLPPQEIHITQLNLNNWTMPS 547
           ER  R + LI E+ KI   L I+    P +I++        TMP+
Sbjct: 788 ERFTRRALLIEEVIKILLELDIQYRFHPLDINVK-------TMPT 825

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.

Arabidopsis thaliana (taxid: 3702)

>sp|F4IME2|MSL8_ARATH Mechanosensitive ion channel protein 8 OS=Arabidopsis thaliana GN=MSL8 PE=2 SV=2

 Score =  134 bits (337), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 139/523 (26%), Positives = 231/523 (44%), Gaps = 128/523 (24%)

Query: 145 LRNCIRNCMWLGLVLRAWTCIFNEKLHK--KNKMLEKVFRALVAVSLGATIWLIKIVLVK 202
           +R  ++NC+WLGLVL AW  +F++K+ +  +++ L  V + LV   L   +WLIK ++VK
Sbjct: 378 VRRAVQNCLWLGLVLLAWHFLFDKKVQRETRSRFLPYVTKILVCFLLSTILWLIKTLVVK 437

Query: 203 VLASSFYVTTYFNRMKESVFHHYILETLSGPP--KMEGLMANDEEKKQLKKKRRKPNSNL 260
           VLASSF+V+TYF+R++E++F+ Y++ETLSGPP  +M  +   +E  +    K +   +NL
Sbjct: 438 VLASSFHVSTYFDRIQEALFNQYVIETLSGPPMIEMSRIEEEEERAQDEIFKMQNAGANL 497

Query: 261 SGSKSLPANWEEGSGR----------------KEIDMEKLRKLSMETTASTWSMKRLVSY 304
                  A     SGR                  I ME L +++ +   S W+MKRL+  
Sbjct: 498 PPDLCAAAFPPGKSGRVMNPKLSPIIPKSTTDNGISMEHLHRMNHKNI-SAWNMKRLMKI 556

Query: 305 I-------------------------------KSSEKPLQPNVA-----------LMTFF 322
           +                               K++ + +  NV            LM F 
Sbjct: 557 VRNVSLTTLDEQMLESTYEDESTRQIRSEKEAKAAARKIFKNVEQRGAKYIYLEDLMRFL 616

Query: 323 KRVEVHSIFPLFEGALEIGRVTKHLFRNW--------------AKITSTLV--------- 359
           +  E      LFEGA E  R++K   +NW                 T T V         
Sbjct: 617 REDEAMKTMGLFEGAPENKRISKSALKNWLVNAFRERRALALTLNDTKTAVNKLHHMINI 676

Query: 360 --MVIIIVVSLLVMKLATTQVVFSVLTQLVLVGWLFPNA---------FLLTKTKSNFCR 408
              ++I+V+ L+++++A+++V+  V +Q+VL+ ++F N          FL      +   
Sbjct: 677 VTAIVIVVIWLVLLEIASSKVLLFVSSQVVLLAFIFGNTVKTVFESIIFLFIVHPYDVGD 736

Query: 409 PEMSDSINLTVDISTSMQTII------------ALKKAVQINTTTRFPSI---FEFSSYS 453
               DS+ L V+    + T+             +L     IN   R P +    EF  + 
Sbjct: 737 RCEIDSVQLVVEEMNILTTVFLRYDNLKIMYPNSLLWQKSINNYYRSPDMGDAIEFCVHI 796

Query: 454 TPTAFIIHCILR--ANHCN-------PKHSVTVKERAELNKIRMRLGVQHTINHQTCAER 504
           T     I  I +  +N+ +       P+  + VK+  +L+ +R+ +   H INHQ  AER
Sbjct: 797 TTPLEKISVIKQRISNYIDNKPEYWYPQAKIIVKDLEDLHIVRLAIWPCHRINHQDMAER 856

Query: 505 SIRTSELILELKKIFENLGIKCHLPPQEIHITQLNLNNWTMPS 547
             R + L+ E+ KI   L I+    P       L++N  TMP+
Sbjct: 857 WTRRAVLVEEVIKILLELDIQHRFYP-------LDINVRTMPT 892

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPG3|MSL4_ARATH Mechanosensitive ion channel protein 4 OS=Arabidopsis thaliana GN=MSL4 PE=3 SV=1

 Score =  132 bits (333), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 131/528 (24%), Positives = 230/528 (43%), Gaps = 138/528 (26%)

Query: 145 LRNCIRNCMWLGLVLRAWTCIFNEKLHK--KNKMLEKVFRALVAVSLGATIWLIKIVLVK 202
           +R  ++NC+WLGLVL AW  +F++K+ +  ++ +L+ V + L+ + +   IWLIK +LVK
Sbjct: 337 IRKPVQNCLWLGLVLIAWHFLFDKKVEREMRSTVLKYVTKVLICLLVAVIIWLIKTLLVK 396

Query: 203 VLASSFYVTTYFNRMKESVFHHYILETLSGPPKM-----EGLMANDEEKKQLKKKRRKPN 257
           VLASSF+++TYF+R++ES+F  Y++ETLSGPP++     E  +AND +  ++  ++  P 
Sbjct: 397 VLASSFHMSTYFDRIQESLFTQYVIETLSGPPRIEIHIEEEKVANDVKTFEIVGRKLSP- 455

Query: 258 SNLSGSKSL--PANWEEGSGR--------------------KEIDMEKLRKLSME----T 291
               G K++  P     GSGR                    KE   E +R   ++     
Sbjct: 456 ---LGPKAVSSPPQVTVGSGRLQKSPSRVGKSPVLSRSGSKKEGGEEGIRIDHLQRMNTK 512

Query: 292 TASTWSMKRLVSYIKS--------------------------------SEKPLQPNVA-- 317
             S W MK+L++ IK                                 + + +  NVA  
Sbjct: 513 NVSAWKMKKLMNVIKKGTLSTLDEQIQDTTTQEDDKATQIRSEFEAKLAARKIFQNVAEP 572

Query: 318 ---------LMTFFKRVEVHSIFPLFEGALEIGRVTKHLFRNWA---------------- 352
                     M F    E      LFEGA E  +++K   +NW                 
Sbjct: 573 GSRYIYMEDFMRFLSEDESERAMDLFEGASECHKISKSCLKNWVVNAFRERRALALTLND 632

Query: 353 ---------KITSTLVMVIIIVVSLLVMKLATTQVVFSVLTQLVLVGWLFPNA------- 396
                    +I   LV ++I+++ LL++ +ATT+ +  + +QL+LV ++F N+       
Sbjct: 633 TKTAVNRLHRIVDVLVSIVILIIWLLILGIATTKFLLVISSQLLLVVFVFGNSCKTIFEA 692

Query: 397 --FLLTKTKSNFCRPEMSDSINLTVDISTSMQTII------------ALKKAVQINTTTR 442
             F+      +       D + + V+    + T+             +L     I    R
Sbjct: 693 VIFVFVMHPFDVGDRCEIDGVQMIVEEMNILTTVFLRFDNQKIVYPNSLLGTKPIANYYR 752

Query: 443 FPSIFE----FSSYSTP---TAFIIHCIL-----RANHCNPKHSVTVKERAELNKIRMRL 490
            P + +    F   +TP   T  +   IL     + +H +P   +  ++   LN +++ +
Sbjct: 753 SPDMQDAIEFFVHIATPPEKTTALRQRILSYVDNKKDHWHPSPMIVFRDMCGLNSVKIAM 812

Query: 491 GVQHTINHQTCAERSIRTSELILELKKIFENLGIKCHLPPQEIHITQL 538
              H +NHQ   ER +R  +L+ E+ ++   L I+  L P  I++  L
Sbjct: 813 WPTHKMNHQNMGERYVRRGQLLEEIGRLCRELDIEYRLYPLNINVKSL 860

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84M97|MSL9_ARATH Mechanosensitive ion channel protein 9 OS=Arabidopsis thaliana GN=MSL9 PE=2 SV=1

 Score =  124 bits (311), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 119/520 (22%), Positives = 216/520 (41%), Gaps = 166/520 (31%)

Query: 145 LRNCIRNCMWLGLVLRAWTCIFN---EKLHKKNKMLEKVFRALVAVSLGATIWLIKIVLV 201
           L+  ++  +W  LVL AW C+F+   ++  K  + L+ +   +V++ +G+ ++L+K   +
Sbjct: 258 LKKNVQVFIWFSLVLIAWICLFDGDVKRTRKTKRFLDFITWTIVSLLVGSILFLVKTFAL 317

Query: 202 KVLASSFYVTTYFNRMKESVFHHYILETLSGPPKMEGLMANDEEKKQLKKKRRKPNSN-L 260
           KVLAS F V  +F R++ESVFH Y+L+TLSGPP +E          + +   R P++  L
Sbjct: 318 KVLASKFNVRNFFERIQESVFHQYVLQTLSGPPLIE----------EAENVGRVPSTGHL 367

Query: 261 SGSKSLPANWEEGSGRKEIDMEKLRKLSMETTASTWSMKRLVSYIKSS------------ 308
           S +++      +   +K IDM K+ ++  E   S W+M+ L+  + +S            
Sbjct: 368 SFTRTKDG---KVKDKKVIDMGKVHRMKQE-KVSAWTMRVLIEAVGTSGISTISSTLDEV 423

Query: 309 --------------------EKPLQPNVA-----------LMTFFKRVEVHSIFPLFEGA 337
                                  +  NVA           L+ F  + EV  + PL E A
Sbjct: 424 NNKKERTDKEITNEMEAVAAAYDVFNNVAKPNHNYIEEDDLLRFMIKEEVDLVLPLIEDA 483

Query: 338 LEIGRVTKHLFRNWA-------------------------KITSTLVMVIIIVVSLLVMK 372
            + G++T+  F  W                          K+ + ++ VI  +V ++++ 
Sbjct: 484 -DTGKITRKTFTEWVVNVYTSRKTIGHSLNDTKTAVKQLDKLITGILTVITFIVWMVLLD 542

Query: 373 LATTQVVFSVLTQLV----LVGWLFPNAF------------------------------- 397
           +A+T+++    +Q +    ++G    N F                               
Sbjct: 543 IASTKLLLVFSSQFLGLAFMIGSTCKNIFESFMFVFVMHPYDVGDRCVVDGVMLLVEEID 602

Query: 398 --------------------LLTKTKSNFCR-PEMSDSINLTVDISTSMQTIIALKKAVQ 436
                               L++K  SNF R P+M D ++  +  ST  + I  LK  + 
Sbjct: 603 LLTTVFLKIDNEKVFYPNSVLISKPISNFYRSPDMGDYVDFGIAFSTPAEKIGCLKGKIG 662

Query: 437 INTTTRFPSIFEFSSYSTPTAFIIHCILRANHCNPKHSVTVKERAELNKIRMRLGVQHTI 496
                                   + +  + H  P+  V V+    +NK+ + + VQHTI
Sbjct: 663 -----------------------EYLVANSQHWYPEAQVMVRAIENMNKLVLNILVQHTI 699

Query: 497 NHQTCAERSIRTSELILELKKIFENLGIKCHLPPQEIHIT 536
           N Q   E+S+R + LI+ +K+I E+L I   L PQ++++T
Sbjct: 700 NFQVYVEKSLRRTALIIAIKRILEDLEIDYTLLPQDVNLT 739

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LH74|MSL5_ARATH Mechanosensitive ion channel protein 5 OS=Arabidopsis thaliana GN=MSL5 PE=2 SV=1

 Score =  118 bits (296), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/274 (30%), Positives = 133/274 (48%), Gaps = 73/274 (26%)

Query: 145 LRNCIRNCMWLGLVLRAWTCIFNEKLHKKNK--MLEKVFRALVAVSLGATIWLIKIVLVK 202
           +R  ++NC+WLGLVL AW  +F++K+ ++ +   L  V R LV + +   IWL+K +LVK
Sbjct: 347 VRKSVQNCLWLGLVLLAWHFLFDKKVERETRSTALRYVTRVLVCLLVALIIWLVKTILVK 406

Query: 203 VLASSFYVTTYFNRMKESVFHHYILETLSGPPKMEGLMANDEEKKQLKKKRRKPNSNLSG 262
           VLASSF+++TYF+R++ES+F  Y++ETLSGPP ME  +   EE++Q   +  K    L+G
Sbjct: 407 VLASSFHMSTYFDRIQESLFTQYVIETLSGPPLME--IQRMEEEEQQVAEDVKSLEKLAG 464

Query: 263 SKSLPA-----------------------NWEEGSGRKEIDMEKLRKLSMETTASTWSMK 299
           +K  PA                         E+G G   I +++L++++ +   S W+MK
Sbjct: 465 AKLPPALKATVKSFMKVGKSPGLNRIGSKRGEDGEG---IRIDQLKRMNTKNV-SAWNMK 520

Query: 300 RLVSYI-------------------------------KSSEKPLQPNVA----------- 317
           RL++ I                               K + + +  NV            
Sbjct: 521 RLMNIILKGAISTLDQNMQDTTQEDEDATHIRSEYEAKCAARKIFHNVTEPGSRYIYLED 580

Query: 318 LMTFFKRVEVHSIFPLFEGALEIGRVTKHLFRNW 351
            + F    E      LFEGA E  +++K   +NW
Sbjct: 581 FLRFLCEEEAERAMALFEGASESDKISKSCLKNW 614

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYM1|MSL6_ARATH Mechanosensitive ion channel protein 6 OS=Arabidopsis thaliana GN=MSL6 PE=1 SV=1

 Score =  111 bits (277), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/274 (32%), Positives = 136/274 (49%), Gaps = 73/274 (26%)

Query: 145 LRNCIRNCMWLGLVLRAWTCIFNEKLHK--KNKMLEKVFRALVAVSLGATIWLIKIVLVK 202
           +R  ++NC+WLGLVL AW  +F+EK+ K    K L  V +  V + +G  +WL+K +LVK
Sbjct: 320 VRKAVQNCLWLGLVLLAWHFLFDEKVAKAANTKALRVVTKIFVCLLVGFLLWLVKTLLVK 379

Query: 203 VLASSFYVTTYFNRMKESVFHHYILETLSGPPKMEGLMANDEEKKQLK---KKRRKPNSN 259
           VLASSF+++TYF+R++ES+F  Y++ETLSGPP +E +  N+EE++++    KK + P   
Sbjct: 380 VLASSFHMSTYFDRIQESLFTQYVIETLSGPPLIE-IQKNEEEEERISVEVKKFQNPGGV 438

Query: 260 --LSGSKSLPANWEEGSGR------------------KEIDMEKLRKLSMETTASTWSMK 299
              SG++  P      +G+                  K I ++ L KL+ +   S W MK
Sbjct: 439 EIQSGAQKSPMK----TGKSPFLSHVLSNGGGGGGENKGITIDSLHKLNPKNV-SAWKMK 493

Query: 300 RLVSYIKSS-----EKPLQP--------------------------NVA----------- 317
           RL++ I++      ++ LQ                           NVA           
Sbjct: 494 RLMNIIRNGSLTTLDEQLQDPSLDDDKGNQIRSEFEAKLAARKIFHNVAKPGSKFIYAND 553

Query: 318 LMTFFKRVEVHSIFPLFEGALEIGRVTKHLFRNW 351
           +M F    E      LFEGA E  R++K   +NW
Sbjct: 554 IMRFLPDDEALKTLSLFEGASETNRISKSSLKNW 587


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.132    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 224,553,898
Number of Sequences: 539616
Number of extensions: 9184759
Number of successful extensions: 36585
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 36352
Number of HSP's gapped (non-prelim): 207
length of query: 630
length of database: 191,569,459
effective HSP length: 124
effective length of query: 506
effective length of database: 124,657,075
effective search space: 63076479950
effective search space used: 63076479950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	630
356560877	699	PREDICTED: uncharacterized protein At5g1	0.611	0.550	0.397	4e-79
255566030	698	conserved hypothetical protein [Ricinus	0.609	0.550	0.381	4e-77
356560605	693	PREDICTED: uncharacterized protein At5g1	0.611	0.555	0.397	7e-75
296088755	529	unnamed protein product [Vitis vinifera]	0.603	0.718	0.390	5e-67
225463832	663	PREDICTED: uncharacterized protein At5g1	0.604	0.574	0.385	9e-67
449442319	686	PREDICTED: mechanosensitive ion channel	0.604	0.555	0.392	5e-64
147845956	826	hypothetical protein VITISV_007865 [Viti	0.590	0.450	0.388	1e-63
225444788	772	PREDICTED: uncharacterized protein At5g1	0.569	0.465	0.312	8e-52
297738590	644	unnamed protein product [Vitis vinifera]	0.569	0.557	0.307	2e-48
225444790	772	PREDICTED: uncharacterized protein At5g1	0.565	0.461	0.297	2e-48

>gi|356560877|ref|XP_003548713.1| PREDICTED: uncharacterized protein At5g12080-like [Glycine max]

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 200/503 (39%), Positives = 278/503 (55%), Gaps = 118/503 (23%)

Query: 145 LRNCIRNCMWLGLVLRA-WTCIFNEKLHKKNKMLEKVFRALVAVSLGATIWLIKIVLVKV 203
           LRN IRNCMWLGLVL + W+ +FN+   K +K L KVF+ALVAV +GATIWL+KIVLVK+
Sbjct: 203 LRNSIRNCMWLGLVLLSYWSMVFNDVQKKNHKFLNKVFQALVAVLVGATIWLVKIVLVKM 262

Query: 204 LASSFYVTTYFNRMKESVFHHYILETLSGPPKMEGLMANDEEKKQLKKKRRKPNSNLSGS 263
           LASSF+VTTYF+RMKESVFHHYILETLSGPP     M + EE  +          +L+GS
Sbjct: 263 LASSFHVTTYFDRMKESVFHHYILETLSGPP-----MEDAEEVLR--------QHHLAGS 309

Query: 264 KSLPANWEEGS-------GRKEIDMEKLRKLSMETTASTWSMKRLVSYIKSS-------- 308
           KS+PA W   +       G ++IDMEKLRKLSME+TA+ WS+KRLV+Y++SS        
Sbjct: 310 KSMPARWNAKNLYKSKRFGSRKIDMEKLRKLSMESTATAWSVKRLVNYVRSSGLSTISRT 369

Query: 309 --------------------EKPLQPNVA-----------LMTFFKRVEVHSIFPLFEGA 337
                                + +  NVA           LM F KRVE+H+IFPLFEGA
Sbjct: 370 VDDFGNAESEISSEWEARNCAQRIFKNVAKPGAKYIEEEDLMRFLKRVEIHTIFPLFEGA 429

Query: 338 LEIGRVTKHLFRNWA-------------------------KITSTLVMVIIIVVSLLVMK 372
           LE G++++  FRNW                          KI S +V VIII+V LL+M+
Sbjct: 430 LETGQISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKIASAVVSVIIIIVMLLLME 489

Query: 373 LATTQVVFSVLTQLVLVGWLFPNA---------FLLTKTKSNFCRPEMSDSINLTVDIST 423
           +AT +++   +TQ VL+G  F            F+      +     + D +++ V+   
Sbjct: 490 MATIKIILFCITQFVLIGVAFQGTCKTVLEAIIFVFVMHPFDIGDRCVIDGVHMIVEEMN 549

Query: 424 SMQTII------------ALKKAVQINTTTRFPSIFEFSSYSTPTAFIIHCIL------- 464
            + T+             A+  +  I+   R P +++   ++   +  +  IL       
Sbjct: 550 ILTTVFLRYDNEKIYYPNAVLLSKPISNFYRSPEMWDSIDFTIDVSTSMETILALKKSIQ 609

Query: 465 -----RANHCNPKHSVTVKERAELNKIRMRLGVQHTINHQTCAERSIRTSELILELKKIF 519
                +  + NPKHS+  K    ++K+++ L VQHTINHQ   ER+IR +EL+LELK+IF
Sbjct: 610 MYIESKPKYWNPKHSMIAKGIENMDKLKLCLSVQHTINHQNYGERNIRITELLLELKRIF 669

Query: 520 ENLGIKCHLPPQEIHITQLNLNN 542
           E  G+K HL PQEI IT +N+ +
Sbjct: 670 EIHGVKYHLLPQEIQITHMNIEH 692

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566030|ref|XP_002524003.1| conserved hypothetical protein [Ricinus communis] gi|223536730|gb|EEF38371.1| conserved hypothetical protein [Ricinus communis]

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 193/506 (38%), Positives = 273/506 (53%), Gaps = 122/506 (24%)

Query: 145 LRNCIRNCMWLGLVLRAWTCIFNEKLHKKNKMLEKVFRALVAVSLGATIWLIKIVLVKVL 204
           LR   +NC WLGL L AW  +F++ +HK NK+L+K FR L+AV +GATIWL+KIVLVKVL
Sbjct: 203 LRKSFQNCAWLGLALVAWMIMFHD-VHKHNKILKKAFRFLIAVLIGATIWLLKIVLVKVL 261

Query: 205 ASSFYVTTYFNRMKESVFHHYILETLSGPPKMEGLMANDEEKKQLKKKRRKPNSNLSGSK 264
           ASSF+V T+F+RMKESVFHHYIL+TLSGPP        DE++++    R      L  S+
Sbjct: 262 ASSFHVATFFDRMKESVFHHYILDTLSGPPL-------DEDERETPHPR-----GLRHSR 309

Query: 265 SLPANWEE------------GSGRKEIDMEKLRKLSMETTASTWSMKRLVSYIKSS---- 308
           +LPA  ++              G  +IDME+L+KLS+ + A+ WS+KRLVS I SS    
Sbjct: 310 TLPARLKDRPVASLTPSRSKKYGPGKIDMERLKKLSLNSRATAWSVKRLVSVIMSSGLST 369

Query: 309 ------------------------EKPLQPNVA-----------LMTFFKRVEVHSIFPL 333
                                    + +  +VA           L+ F KR EVH+IFPL
Sbjct: 370 ISRTVDDFGNGKSEISSEWEARSCAQRIFKHVAKTGAKYIEEEDLLRFLKREEVHTIFPL 429

Query: 334 FEGALEIGRVTKHLFRNWA-------------------------KITSTLVMVIIIVVSL 368
            EGALE G++TK  FRNW                          K+ S +V V+IIV+SL
Sbjct: 430 LEGALETGKITKSSFRNWVVHAYVERKALAHSLNDTKTAVQQLHKLASAIVTVLIIVISL 489

Query: 369 LVMKLATTQVVFSVLTQLVLVGWLFPNA---------FLLTKTKSNFCRPEMSDSINLTV 419
           LVM LATT++V  V +QL+LVG++F N          F+      +     + D + + V
Sbjct: 490 LVMGLATTKIVLVVTSQLLLVGFMFQNTCKTIFESIIFVFVMHPFDVGDRCVVDGVQMIV 549

Query: 420 DISTSMQTII---ALKKAVQINTT---------TRFPSI---FEFSSYSTPTAFIIHCIL 464
           +    + T+     ++K    N+           R P +    +F+   + T    + + 
Sbjct: 550 EEMNILSTVFLRYDMEKIYYPNSVLLTKPISNFRRSPDMGDSIDFTIDVSTTVDDFNALK 609

Query: 465 RA---------NHCNPKHSVTVKERAELNKIRMRLGVQHTINHQTCAERSIRTSELILEL 515
           +A          H +PKH++ VKE   ++K+++ L VQHT+NHQ   E+S R SEL+ EL
Sbjct: 610 KAIQTYIESKPKHWSPKHTLLVKEIENVDKMKLTLCVQHTMNHQNYGEKSSRRSELVFEL 669

Query: 516 KKIFENLGIKCHLPPQEIHITQLNLN 541
           KKIFENLGI+ HL PQ+IH+TQ+N+ 
Sbjct: 670 KKIFENLGIRYHLLPQQIHLTQVNMG 695

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560605|ref|XP_003548581.1| PREDICTED: uncharacterized protein At5g12080-like [Glycine max]

 Score =  288 bits (737), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 197/496 (39%), Positives = 268/496 (54%), Gaps = 111/496 (22%)

Query: 145 LRNCIRNCMWLGLVLRA-WTCIFNEKLHKKNKMLEKVFRALVAVSLGATIWLIKIVLVKV 203
           LR  IRNCMWLGLVL + W+ +F++   K +K L KVF+ALVAV +GATIWL+KIVLVK+
Sbjct: 204 LRKSIRNCMWLGLVLLSYWSVVFDDVQKKNHKFLNKVFQALVAVLVGATIWLLKIVLVKM 263

Query: 204 LASSFYVTTYFNRMKESVFHHYILETLSGPPKMEGLMANDEEKKQLKKKRRKPNSNLSGS 263
           LASSF+VTTYF+RMKESVFHHYILETLS PP     M +D  ++Q    R     NL+ S
Sbjct: 264 LASSFHVTTYFDRMKESVFHHYILETLSDPP-----MMDDVAEQQHHLTRWNNAKNLNKS 318

Query: 264 KSLPANWEEGSGRKEIDMEKLRKLSMETTASTWSMKRLVSYIKSS--------------- 308
           K          G + IDMEKLRKLSME+TAS WS+KRLV+Y++SS               
Sbjct: 319 KKF--------GSRRIDMEKLRKLSMESTASAWSVKRLVNYVRSSGLSTISRTVDDFGNA 370

Query: 309 -------------EKPLQPNVA-----------LMTFFKRVEVHSIFPLFEGALEIGRVT 344
                         + +  NVA           LM F KRVE+H+IFPLFEGALE G ++
Sbjct: 371 ESEINSEWEARNCAQRIFKNVAKPGAKYIEEEDLMRFLKRVEIHTIFPLFEGALETGHIS 430

Query: 345 KHLFRNWA-------------------------KITSTLVMVIIIVVSLLVMKLATTQVV 379
           +  FRNW                          KI S +V VIII+V LLVM++AT +++
Sbjct: 431 RSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKIASAIVSVIIIIVMLLVMEVATLKII 490

Query: 380 FSVLTQLVLVGWLFPNA---------FLLTKTKSNFCRPEMSDSINLTVDISTSMQTII- 429
              +TQ VL+G  F            F+      +     + D +++ V+    + T+  
Sbjct: 491 LFCITQTVLIGVAFQGTCKTVLEAIIFVFVMHPFDIGDRCVIDGVHMIVEEMNILTTVFL 550

Query: 430 -----------ALKKAVQINTTTRFPSIFEFSSYSTPTAFIIHCIL------------RA 466
                      A+  +  I+   R P + +   ++   +  +  IL            + 
Sbjct: 551 RYDNEKIYYPNAVLLSKPISNFYRSPEMCDSIDFTIDVSTSMETILALKKSIQMYIESKP 610

Query: 467 NHCNPKHSVTVKERAELNKIRMRLGVQHTINHQTCAERSIRTSELILELKKIFENLGIKC 526
            + NPKHS+  K    ++K+++ L VQHTINHQ   ER++R +EL+LELKKIFE  GIK 
Sbjct: 611 KYWNPKHSMIAKGIENMDKLKLCLSVQHTINHQNYGERNVRITELLLELKKIFEIHGIKY 670

Query: 527 HLPPQEIHITQLNLNN 542
           HL PQEI IT +N+ +
Sbjct: 671 HLLPQEIQITHMNIEH 686

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088755|emb|CBI38205.3| unnamed protein product [Vitis vinifera]

 Score =  261 bits (668), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 196/502 (39%), Positives = 269/502 (53%), Gaps = 122/502 (24%)

Query: 145 LRNCIRNCMWLGLVLRAWTCIFNEKLHKKNKMLEKVFRALVAVSLGATIWLIKIVLVKVL 204
           LR   +NC+WLGLVL AW  +F   +HK NK+L+K FRALVAV + ATIWL+KIV+VKVL
Sbjct: 40  LRKSFQNCVWLGLVLLAWMIMF-PNVHKHNKVLQKAFRALVAVLIAATIWLLKIVMVKVL 98

Query: 205 ASSFYVTTYFNRMKESVFHHYILETLSGPPKMEGLMANDEEKKQLKKKRRKPNSNLSGSK 264
           ASSF+V T+F+RMKESVFHHY+LE LSGPP        DEE++   K+R      L  S+
Sbjct: 99  ASSFHVATFFDRMKESVFHHYVLEALSGPPL-------DEEERDRPKRR-----VLMASQ 146

Query: 265 SLPANWEEG---------SGRKEIDMEKLRKLSMETTASTWSMKRLVSYIKS-------- 307
           SLPA   +G         S RK IDM+KLR+LS    AS WS+KRLVSY++S        
Sbjct: 147 SLPAKLRDGPPKTVTQTKSSRK-IDMKKLRRLSRR--ASAWSVKRLVSYVRSSGLSTISR 203

Query: 308 --------------------SEKPLQPNVA-----------LMTFFKRVEVHSIFPLFEG 336
                               S + +  NVA           L+ F    EV +I PLFEG
Sbjct: 204 TVDDFGKAESEITSEWEARTSAQRIFKNVAKPHAKFIEEEDLLRFLTSDEVCTILPLFEG 263

Query: 337 ALEIGRVTKHLFRNWA-------------------------KITSTLVMVIIIVVSLLVM 371
           A+E  R+TK  FRNW                          KI S +V+V+I+VVSLLVM
Sbjct: 264 AVETSRITKSSFRNWVVQAYVERKSLAHSLNDTKTAVHQLHKIASAIVIVVIVVVSLLVM 323

Query: 372 KLATTQVVFSVLTQLVLVGWLFPNA---------FLLTKTKSNFCRPEMSDSINLTVDIS 422
            LAT++V+  V +QL+L G++F N+         F+      +     + D + + V+  
Sbjct: 324 GLATSKVILVVTSQLLLAGFVFQNSCKTVFESIIFVFVMHPFDVGDRCVIDGVQMIVEEM 383

Query: 423 TSMQTI--------IALKKAV----QINTTTRFPSIFEF----SSYSTP--------TAF 458
             + T+        I    +V     I+   R P + +       +STP         A 
Sbjct: 384 NILSTVFLRFDSEKIYFPNSVLLTKPISNFRRSPDMADMIDFVIDFSTPLDTINNLKKAI 443

Query: 459 IIHCILRANHCNPKHSVTVKERAELNKIRMRLGVQHTINHQTCAERSIRTSELILELKKI 518
             +   +  + N KH+V VKE   +NK++M L V HT+NHQ   E+++R +EL+ ELK+I
Sbjct: 444 QTYIEGKPKYWNQKHTVIVKEIENMNKLKMCLCVTHTMNHQNFGEKNLRKTELLFELKRI 503

Query: 519 FENLGIKCHLPPQEIHITQLNL 540
           FE+LGIK HL PQE+H+TQ+N+
Sbjct: 504 FESLGIKYHLLPQEVHLTQVNM 525

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463832|ref|XP_002264618.1| PREDICTED: uncharacterized protein At5g12080 [Vitis vinifera]

 Score =  261 bits (667), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 193/501 (38%), Positives = 269/501 (53%), Gaps = 120/501 (23%)

Query: 145 LRNCIRNCMWLGLVLRAWTCIFNEKLHKKNKMLEKVFRALVAVSLGATIWLIKIVLVKVL 204
           LR   +NC+WLGLVL AW  +F   +HK NK+L+K FRALVAV + ATIWL+KIV+VKVL
Sbjct: 174 LRKSFQNCVWLGLVLLAWMIMF-PNVHKHNKVLQKAFRALVAVLIAATIWLLKIVMVKVL 232

Query: 205 ASSFYVTTYFNRMKESVFHHYILETLSGPPKMEGLMANDEEKKQLKKKRRKPNSNLSGSK 264
           ASSF+V T+F+RMKESVFHHY+LE LSGPP        DEE++   K+R      L  S+
Sbjct: 233 ASSFHVATFFDRMKESVFHHYVLEALSGPPL-------DEEERDRPKRR-----VLMASQ 280

Query: 265 SLPANWEEGSGR--------KEIDMEKLRKLSMETTASTWSMKRLVSYIKS--------- 307
           SLPA   +G  +        ++IDM+KLR+LS    AS WS+KRLVSY++S         
Sbjct: 281 SLPAKLRDGPPKTVTQTKSSRKIDMKKLRRLSRR--ASAWSVKRLVSYVRSSGLSTISRT 338

Query: 308 -------------------SEKPLQPNVA-----------LMTFFKRVEVHSIFPLFEGA 337
                              S + +  NVA           L+ F    EV +I PLFEGA
Sbjct: 339 VDDFGKAESEITSEWEARTSAQRIFKNVAKPHAKFIEEEDLLRFLTSDEVCTILPLFEGA 398

Query: 338 LEIGRVTKHLFRNWA-------------------------KITSTLVMVIIIVVSLLVMK 372
           +E  R+TK  FRNW                          KI S +V+V+I+VVSLLVM 
Sbjct: 399 VETSRITKSSFRNWVVQAYVERKSLAHSLNDTKTAVHQLHKIASAIVIVVIVVVSLLVMG 458

Query: 373 LATTQVVFSVLTQLVLVGWLFPNA---------FLLTKTKSNFCRPEMSDSINLTVDIST 423
           LAT++V+  V +QL+L G++F N+         F+      +     + D + + V+   
Sbjct: 459 LATSKVILVVTSQLLLAGFVFQNSCKTVFESIIFVFVMHPFDVGDRCVIDGVQMIVEEMN 518

Query: 424 SMQTI--------IALKKAV----QINTTTRFPSIFEF----SSYSTP--------TAFI 459
            + T+        I    +V     I+   R P + +       +STP         A  
Sbjct: 519 ILSTVFLRFDSEKIYFPNSVLLTKPISNFRRSPDMADMIDFVIDFSTPLDTINNLKKAIQ 578

Query: 460 IHCILRANHCNPKHSVTVKERAELNKIRMRLGVQHTINHQTCAERSIRTSELILELKKIF 519
            +   +  + N KH+V VKE   +NK++M L V HT+NHQ   E+++R +EL+ ELK+IF
Sbjct: 579 TYIEGKPKYWNQKHTVIVKEIENMNKLKMCLCVTHTMNHQNFGEKNLRKTELLFELKRIF 638

Query: 520 ENLGIKCHLPPQEIHITQLNL 540
           E+LGIK HL PQE+H+TQ+N+
Sbjct: 639 ESLGIKYHLLPQEVHLTQVNM 659

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442319|ref|XP_004138929.1| PREDICTED: mechanosensitive ion channel protein 10-like [Cucumis sativus]

 Score =  252 bits (643), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 196/500 (39%), Positives = 273/500 (54%), Gaps = 119/500 (23%)

Query: 145 LRNCIRNCMWLGLVLRAWTCIFNEKLHKKNKMLEKVFRALVAVSLGATIWLIKIVLVKVL 204
           LR   +NC WLGLVL AW  +F + +H  NK+L KVFR L+AV +GATIWL+KI+LVKVL
Sbjct: 202 LRKSFQNCAWLGLVLIAWMIMFPD-VHHNNKVLLKVFRFLIAVLIGATIWLLKILLVKVL 260

Query: 205 ASSFYVTTYFNRMKESVFHHYILETLSGPPKMEGLMANDEEKKQLKKKRRKPNSNLSGSK 264
           ASSF+V T+F+RMKESVF+HYILETLSGPP        DEE++         +    G +
Sbjct: 261 ASSFHVATFFDRMKESVFNHYILETLSGPPL-------DEEER---------DKEGGGGQ 304

Query: 265 SLPANWEEGSGRKEIDMEKLRKLSMETTASTWSMKRLVSYIKSS---------------- 308
           +L  +  + S +K IDME+LRKLS+E   S WS+KRLVSY++SS                
Sbjct: 305 TLSRSKRQDSCQK-IDMERLRKLSLERRPSAWSVKRLVSYVRSSGLSTISRTVDDFANAE 363

Query: 309 ------------EKPLQPNVA-----------LMTFFKRVEVHSIFPLFEGALEIGRVTK 345
                        + +  NVA           L+ F K  EV++IFPLFEGA+E G+++K
Sbjct: 364 SEITSESEARNCAQRVFKNVAKPGARYIEEEDLLRFLKDEEVNTIFPLFEGAIETGKISK 423

Query: 346 HLFRNWA-------------------------KITSTLVMVIIIVVSLLVMKLATTQVVF 380
             FRNW                          K+ S +V+VIIIV+SLLV+ +ATT+V+F
Sbjct: 424 SAFRNWVVHAYIERKALAHSLNDTKTAVQQLHKLASAVVIVIIIVISLLVLGVATTKVLF 483

Query: 381 SVLTQLVLVGWLFPNA---------FLLTKTKSNFCRPEMSDSINLTVDISTSMQTI--- 428
            + +QL+LVG++F N          F+      +     + D +++ V+    + T+   
Sbjct: 484 VITSQLLLVGFMFQNTCKTIFESIIFVFVMHPFDVGDRCVIDGVHMFVEEMNILSTVFLR 543

Query: 429 -----------IALKKAVQINTTTRFPSIFEFSSYS--TPTAFIIHCILRA--------- 466
                      + L K   I+   R P + +   ++    T+F I   LR          
Sbjct: 544 FDNEKIYYPNSVLLTKP--ISNFRRSPDMSDTVDFTIDVSTSFDIITALRKAMQIYIESK 601

Query: 467 -NHCNPKHSVTVKERAELNKIRMRLGVQHTINHQTCAERSIRTSELILELKKIFENLGIK 525
             H +PKHS+ VKE   ++K++M L VQHT+N Q   ER+ R S+LILELK++FENLGIK
Sbjct: 602 PKHWSPKHSLVVKEIENVDKMKMSLCVQHTMNLQNFPERNNRRSDLILELKRVFENLGIK 661

Query: 526 CHLPPQEIHITQLNLNNWTM 545
            HL PQE+ +TQ NL N  M
Sbjct: 662 YHLLPQEVLVTQFNLTNGRM 681

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147845956|emb|CAN79900.1| hypothetical protein VITISV_007865 [Vitis vinifera]

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 192/494 (38%), Positives = 261/494 (52%), Gaps = 122/494 (24%)

Query: 145 LRNCIRNCMWLGLVLRAWTCIFNEKLHKKNKMLEKVFRALVAVSLGATIWLIKIVLVKVL 204
           LR   +NC+WLGLVL AW  +F   +HK NK+L+K FRALVAV + ATIWL+KIV+VKVL
Sbjct: 174 LRKSFQNCVWLGLVLLAWMIMF-PNVHKHNKVLQKAFRALVAVLIAATIWLLKIVMVKVL 232

Query: 205 ASSFYVTTYFNRMKESVFHHYILETLSGPPKMEGLMANDEEKKQLKKKRRKPNSNLSGSK 264
           ASSF+V T+F+RMKESVFHHY+LE LSGPP        DEE++   K+R      L  S+
Sbjct: 233 ASSFHVATFFDRMKESVFHHYVLEALSGPPL-------DEEERDRPKRRV-----LMASQ 280

Query: 265 SLPANWEEG---------SGRKEIDMEKLRKLSMETTASTWSMKRLVSYIKS-------- 307
           SLPA   +G         S RK IDM+KLR+LS    AS WS+KRLVSY++S        
Sbjct: 281 SLPAKLRDGPPKTVTQTKSSRK-IDMKKLRRLSRR--ASAWSVKRLVSYVRSSGLSTISR 337

Query: 308 --------------------SEKPLQPNVA-----------LMTFFKRVEVHSIFPLFEG 336
                               S + +  NVA           L+ F    EV +I PLFEG
Sbjct: 338 TVDDFGKAESEITSEWEARTSAQRIFKNVAKPHAKFIEEEDLLRFLTSDEVCTILPLFEG 397

Query: 337 ALEIGRVTKHLFRNWA-------------------------KITSTLVMVIIIVVSLLVM 371
           A+E  R+TK  FRNW                          KI S +V+V+I+VVSLLVM
Sbjct: 398 AVETSRITKSSFRNWVVQAYVERKSLAHSLNDTKTAVHQLHKIASAIVIVVIVVVSLLVM 457

Query: 372 KLATTQVVFSVLTQLVLVGWLFPNA---------FLLTKTKSNFCRPEMSDSINLTVDIS 422
            LAT++V+  V +QL+L G++F N+         F+      +     + D + + V+  
Sbjct: 458 GLATSKVILVVTSQLLLAGFVFQNSCKTVFESIIFVFVMHPFDVGDRCVIDGVQMIVEEM 517

Query: 423 TSMQTI--------IALKKAV----QINTTTRFPSIFEF----SSYSTP--------TAF 458
             + T+        I    +V     I+   R P + +       +STP         A 
Sbjct: 518 NILSTVFLRFDSEKIYFPNSVLLTKPISNFRRSPDMADMIDFVIDFSTPLDTINNLKKAI 577

Query: 459 IIHCILRANHCNPKHSVTVKERAELNKIRMRLGVQHTINHQTCAERSIRTSELILELKKI 518
             +   +  + N KH+V VKE   +NK++M L V HT+NHQ   E+++R +EL+ ELK+I
Sbjct: 578 QTYIEGKPKYWNQKHTVIVKEIENMNKLKMCLCVTHTMNHQNFGEKNLRKTELLFELKRI 637

Query: 519 FENLGIKCHLPPQE 532
           FE+LGIK HL PQE
Sbjct: 638 FESLGIKYHLLPQE 651

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444788|ref|XP_002278293.1| PREDICTED: uncharacterized protein At5g12080-like [Vitis vinifera]

 Score =  211 bits (538), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 164/524 (31%), Positives = 231/524 (44%), Gaps = 165/524 (31%)

Query: 145 LRNCIRNCMWLGLVLRAWTCIFNEKL---HKKNKMLEKVFRALVAVSLGATIWLIKIVLV 201
           L+  +   +WLGL+L AW  + N  +    K  ++L  V RAL +  +GA IWL K +LV
Sbjct: 274 LKKSVLVFIWLGLILLAWGLLINRGVKRSRKATRILNYVTRALASCLIGAAIWLAKTLLV 333

Query: 202 KVLASSFYVTTYFNRMKESVFHHYILETLSGPPKMEGLMANDEEKKQLKKKRRKPNSNLS 261
           K+LASSF+VT +F+R++ES+FH Y+L+TLSGPP    LMA  E    +   +    S   
Sbjct: 334 KILASSFHVTRFFDRIQESIFHQYVLQTLSGPP----LMAMAEMVGSVNSAQLSFRSTKR 389

Query: 262 GSKSLPANWEEGSGRKEIDMEKLRKLSMETTASTWSMKRLVSYIKSS------------- 308
           G        + G   + ID+ KL K+  E   S W+MK L+  I+ S             
Sbjct: 390 G--------KGGEKEEVIDVGKLHKIKQEK-VSAWTMKGLIQVIRGSGLTTISNALDDSV 440

Query: 309 -----------------------------EKPLQPNVA---LMTFFKRVEVHSIFPLFEG 336
                                         KP   ++    L+ F K+ EV ++ PLFEG
Sbjct: 441 DDDGGEQKDKEITNEWEARNAASRIFMNVAKPCTKHIDEEDLLRFMKKEEVDNVLPLFEG 500

Query: 337 ALEIGRVTKHLFRNWA-------------------------KITSTLVMVIIIVVSLLVM 371
           A E  ++ +   + W                          KI S +++++II+V LL+M
Sbjct: 501 ASETRKIKRSSLKKWVVNVYLERKSLAHSLNDTKTAIEELNKIASGVMLIVIIIVWLLLM 560

Query: 372 KLATTQVV---------------------------------FSVLTQLVLVG-------- 390
             ATT V+                                 F V  + V+ G        
Sbjct: 561 GFATTNVLVFISSQLLLVAFMFGNTCKTVFEAIIFVFVMHPFDVGDRCVIDGVQMVVEEM 620

Query: 391 --------------WLFPNAFLLTKTKSNFCR-PEMSDSINLTVDISTSMQTIIALKKAV 435
                           +PN+ L TK  SNF R PEMSDS+   VD STSM+TI ALK   
Sbjct: 621 NILTTIFLRYDNEKIFYPNSVLATKPISNFYRSPEMSDSVEFAVDFSTSMETIAALK--- 677

Query: 436 QINTTTRFPSIFEFSSYSTPTAFIIHCILRANHCNPKHSVTVKERAELNKIRMRLGVQHT 495
                 R  +  E    S P            H  P HSV VK+  ++N++ M L V HT
Sbjct: 678 -----ARIKTYLE----SKP-----------QHWRPGHSVLVKDIVDVNQMNMGLYVTHT 717

Query: 496 INHQTCAERSIRTSELILELKKIFENLGIKCHLPPQEIHITQLN 539
           IN Q   ++S R SEL++ELKKIFE L IK HL PQE+H+  ++
Sbjct: 718 INFQNYGDKSSRRSELVIELKKIFEELNIKYHLLPQEVHVRSVD 761

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738590|emb|CBI27835.3| unnamed protein product [Vitis vinifera]

 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 161/524 (30%), Positives = 231/524 (44%), Gaps = 165/524 (31%)

Query: 145 LRNCIRNCMWLGLVLRAWTCIFNEKL---HKKNKMLEKVFRALVAVSLGATIWLIKIVLV 201
           L+  +   +WLGL+L AW  + N  +    K  ++L  V RAL +  +GA IWL K +LV
Sbjct: 146 LKKSVLVFIWLGLILLAWGLLINRGVKRSRKATRILNYVTRALASCLIGAAIWLAKTLLV 205

Query: 202 KVLASSFYVTTYFNRMKESVFHHYILETLSGPPKMEGLMANDEEKKQLKKKRRKPNSNLS 261
           K+LASSF+VT +F+R++ES+FH Y+L+TLSGPP    LMA  E    +   +    S   
Sbjct: 206 KILASSFHVTRFFDRIQESIFHQYVLQTLSGPP----LMAMAEMVGSVNSAQLSFRSTKR 261

Query: 262 GSKSLPANWEEGSGRKEIDMEKLRKLSMETTASTWSMKRLVSYIKSS------------- 308
           G        + G   + ID+ KL K+  E   S W+MK L+  I+ S             
Sbjct: 262 G--------KGGEKEEVIDVGKLHKIKQEK-VSAWTMKGLIQVIRGSGLTTISNALDDSV 312

Query: 309 -----------------------------EKPLQPNVA---LMTFFKRVEVHSIFPLFEG 336
                                         KP   ++    L+ F K+ EV ++ PLFEG
Sbjct: 313 DDDGGEQKDKEITNEWEARNAASRIFMNVAKPCTKHIDEEDLLRFMKKEEVDNVLPLFEG 372

Query: 337 ALEIGRVTKHLFRNWA-------------------------KITSTLVMVIIIVVSLL-- 369
           A E  ++ +   + W                          KI S +++++II+V LL  
Sbjct: 373 ASETRKIKRSSLKKWVVNVYLERKSLAHSLNDTKTAIEELNKIASGVMLIVIIIVWLLLM 432

Query: 370 ------VMKLATTQVV-------------------------FSVLTQLVLVG-------- 390
                 V+   ++Q++                         F V  + V+ G        
Sbjct: 433 GFATTNVLVFISSQLLLVAFMFGNTCKTVFEAIIFVFVMHPFDVGDRCVIDGVQMVVEEM 492

Query: 391 --------------WLFPNAFLLTKTKSNFCR-PEMSDSINLTVDISTSMQTIIALKKAV 435
                           +PN+ L TK  SNF R PEMSDS+   VD STSM+TI ALK   
Sbjct: 493 NILTTIFLRYDNEKIFYPNSVLATKPISNFYRSPEMSDSVEFAVDFSTSMETIAALK--- 549

Query: 436 QINTTTRFPSIFEFSSYSTPTAFIIHCILRANHCNPKHSVTVKERAELNKIRMRLGVQHT 495
                 R  +  E    S P            H  P HSV VK+  ++N++ M L V HT
Sbjct: 550 -----ARIKTYLE----SKP-----------QHWRPGHSVLVKDIVDVNQMNMGLYVTHT 589

Query: 496 INHQTCAERSIRTSELILELKKIFENLGIKCHLPPQEIHITQLN 539
           IN Q   ++S R SEL++ELKKIFE L IK HL PQE+H+  ++
Sbjct: 590 INFQNYGDKSSRRSELVIELKKIFEELNIKYHLLPQEVHVRSVD 633

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444790|ref|XP_002278315.1| PREDICTED: uncharacterized protein At5g12080 [Vitis vinifera] gi|297738591|emb|CBI27836.3| unnamed protein product [Vitis vinifera]

 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 157/528 (29%), Positives = 228/528 (43%), Gaps = 172/528 (32%)

Query: 145 LRNCIRNCMWLGLVLRAWTCIFN---EKLHKKNKMLEKVFRALVAVSLGATIWLIKIVLV 201
           L+  +   +WLGL+L AW  + +   ++  K  ++L  V RAL +  +GA +WL K +L+
Sbjct: 273 LKKSVLVFIWLGLILLAWGLLIDSGVKRSRKTTRILNYVTRALASCLVGAVLWLAKALLI 332

Query: 202 KVLASSFYVTTYFNRMKESVFHHYILETLSGPPKMEGL-MANDEEKKQLKKKRRKPNSNL 260
           K+LASSF+VT +F+R++ES+FH Y+L+TLS PP ME   M       QL           
Sbjct: 333 KILASSFHVTRFFDRIQESLFHQYVLQTLSKPPSMETTEMVGRGNSAQL----------- 381

Query: 261 SGSKSLPANWEEGSGRKE--IDMEKLRKLSMETTASTWSMKRLVSYIKSSEKPLQPNV-- 316
               S  +  ++  G+KE  +D+ KL K+  E   S W+MK L+  I+ S      NV  
Sbjct: 382 ----SFRSEMKQKGGKKEEVVDVGKLYKIDQE-KVSAWTMKGLIDVIRGSRLTTISNVLD 436

Query: 317 -------------------------------------------ALMTFFKRVEVHSIFPL 333
                                                       L  F K+ +V ++ PL
Sbjct: 437 DSVDDEGGEHKDKEIANEWEARTTAVQIFENVAKSDPKYIHEKDLWCFMKKQDVDNLLPL 496

Query: 334 FEGALEIGRVTKHLFRNWA-------------------------KITSTLVMVIIIVVSL 368
           FEGA E  ++ +  F+ W                          KITS + +++II+V L
Sbjct: 497 FEGASETRKIKRSSFKKWVVKVYSERKSLALSLNDAKTAIEELNKITSGVTLIVIIIVWL 556

Query: 369 LVMKLATTQVV---------------------------------FSVLTQLVLVG----- 390
           L+M L TT+V+                                 F V  + V+ G     
Sbjct: 557 LLMGLVTTKVLILISSQLLLSAFMFGNTCKTVFEAMIFVFVMHPFDVGDRCVIDGVQMTV 616

Query: 391 -----------------WLFPNAFLLTKTKSNFCR-PEM-SDSINLTVDISTSMQTIIAL 431
                              +PN+ L TK  SNF R PEM  DS+   VD STSM+TI AL
Sbjct: 617 EEVNILTTIFLRYDNEKIFYPNSVLATKPISNFYRSPEMGGDSVEFAVDFSTSMETIAAL 676

Query: 432 KKAVQINTTTRFPSIFEFSSYSTPTAFIIHCILRANHCNPKHSVTVKERAELNKIRMRLG 491
           K  ++                            +  H  P HSV VK+   +N++ M L 
Sbjct: 677 KDGIKTYLEN-----------------------KPQHWRPVHSVLVKDIVHVNQMNMALY 713

Query: 492 VQHTINHQTCAERSIRTSELILELKKIFENLGIKCHLPPQEIHITQLN 539
           V HTIN Q   ++S R SEL++ELKKIFE L IK HL PQE+H+  ++
Sbjct: 714 VTHTINFQNYGDKSSRRSELVIELKKIFEELNIKYHLLPQEVHLRSVD 761

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	630
TAIR|locus:2202965	856	MSL6 "mechanosensitive channel	0.158	0.116	0.495	2.1e-34
TAIR|locus:2099382	881	MSL5 "mechanosensitive channel	0.193	0.138	0.436	1.3e-33
TAIR|locus:2024927	881	MSL4 "mechanosensitive channel	0.223	0.160	0.385	2.7e-31
TAIR|locus:2827671	849	AT2G17000 "AT2G17000" [Arabido	0.160	0.118	0.475	1.5e-30
TAIR|locus:2143069	734	MSL10 "mechanosensitive channe	0.238	0.204	0.331	1.5e-29
TAIR|locus:2180811	742	MSL9 "mechanosensitive channel	0.239	0.203	0.311	2.7e-27
TAIR|locus:2010287	149	AT1G49260 "AT1G49260" [Arabido	0.130	0.550	0.317	9.1e-10

TAIR|locus:2202965 MSL6 "mechanosensitive channel of small conductance-like 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.1e-34, Sum P(5) = 2.1e-34
 Identities = 51/103 (49%), Positives = 76/103 (73%)

Query:   145 LRNCIRNCMWLGLVLRAWTCIFNEKLHK--KNKMLEKVFRALVAVSLGATIWLIKIVLVK 202
             +R  ++NC+WLGLVL AW  +F+EK+ K    K L  V +  V + +G  +WL+K +LVK
Sbjct:   320 VRKAVQNCLWLGLVLLAWHFLFDEKVAKAANTKALRVVTKIFVCLLVGFLLWLVKTLLVK 379

Query:   203 VLASSFYVTTYFNRMKESVFHHYILETLSGPPKMEGLMANDEE 245
             VLASSF+++TYF+R++ES+F  Y++ETLSGPP +E +  N+EE
Sbjct:   380 VLASSFHMSTYFDRIQESLFTQYVIETLSGPPLIE-IQKNEEE 421

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2099382 MSL5 "mechanosensitive channel of small conductance-like 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.3e-33, Sum P(6) = 1.3e-33
 Identities = 55/126 (43%), Positives = 82/126 (65%)

Query:   145 LRNCIRNCMWLGLVLRAWTCIFNEKLHKKNKM--LEKVFRALVAVSLGATIWLIKIVLVK 202
             +R  ++NC+WLGLVL AW  +F++K+ ++ +   L  V R LV + +   IWL+K +LVK
Sbjct:   347 VRKSVQNCLWLGLVLLAWHFLFDKKVERETRSTALRYVTRVLVCLLVALIIWLVKTILVK 406

Query:   203 VLASSFYVTTYFNRMKESVFHHYILETLSGPPKMEGLMANDEEXXXXXXXXXXPNSNLSG 262
             VLASSF+++TYF+R++ES+F  Y++ETLSGPP ME     +EE              L+G
Sbjct:   407 VLASSFHMSTYFDRIQESLFTQYVIETLSGPPLMEIQRMEEEEQQVAEDVKSL--EKLAG 464

Query:   263 SKSLPA 268
             +K  PA
Sbjct:   465 AKLPPA 470

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2024927 MSL4 "mechanosensitive channel of small conductance-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 2.7e-31, Sum P(4) = 2.7e-31
 Identities = 57/148 (38%), Positives = 94/148 (63%)

Query:   145 LRNCIRNCMWLGLVLRAWTCIFNEKLHK--KNKMLEKVFRALVAVSLGATIWLIKIVLVK 202
             +R  ++NC+WLGLVL AW  +F++K+ +  ++ +L+ V + L+ + +   IWLIK +LVK
Sbjct:   337 IRKPVQNCLWLGLVLIAWHFLFDKKVEREMRSTVLKYVTKVLICLLVAVIIWLIKTLLVK 396

Query:   203 VLASSFYVTTYFNRMKESVFHHYILETLSGPPKMEGLMANDEEXXXXXXXXXXPNSNLS- 261
             VLASSF+++TYF+R++ES+F  Y++ETLSGPP++E +   +E+              LS 
Sbjct:   397 VLASSFHMSTYFDRIQESLFTQYVIETLSGPPRIE-IHIEEEKVANDVKTFEIVGRKLSP 455

Query:   262 -GSKSL--PANWEEGSGRKEIDMEKLRK 286
              G K++  P     GSGR +    ++ K
Sbjct:   456 LGPKAVSSPPQVTVGSGRLQKSPSRVGK 483

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2827671 AT2G17000 "AT2G17000" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.5e-30, Sum P(4) = 1.5e-30
 Identities = 49/103 (47%), Positives = 77/103 (74%)

Query:   145 LRNCIRNCMWLGLVLRAWTCIFNEKLHKKNK--MLEKVFRALVAVSLGATIWLIKIVLVK 202
             ++  ++NC+WLGLVL AW  +F++K+ K+ +  +L  + + LV   L   +WLIK ++VK
Sbjct:   311 VKTAVQNCLWLGLVLLAWHFLFDKKVEKETQSDVLLLMSKILVCFLLSTVLWLIKTLVVK 370

Query:   203 VLASSFYVTTYFNRMKESVFHHYILETLSGPPKMEGLMANDEE 245
             VLASSF+V+TYF+R++E++FHHY++ETLSGPP +E     +EE
Sbjct:   371 VLASSFHVSTYFDRIQEALFHHYLIETLSGPPMLELSRIEEEE 413

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2143069 MSL10 "mechanosensitive channel of small conductance-like 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
 Identities = 56/169 (33%), Positives = 97/169 (57%)

Query:   145 LRNCIRNCMWLGLVLRAWTCIFNEKLHKK---NKMLEKVFRALVAVSLGATIWLIKIVLV 201
             L+  ++  +WL L+L AW  +FN  + +     K+L+ + R L+++  GA  WL+K +L+
Sbjct:   246 LKKSVQVFIWLCLILVAWILLFNHDVKRSPAATKVLKCITRTLISILTGAFFWLVKTLLL 305

Query:   202 KVLASSFYVTTYFNRMKESVFHHYILETLSGPPKMEGLMANDEEXXXXXXXXXXPNSNLS 261
             K+LA++F V  +F+R+++SVFH Y+L+TLSG P ME       E          P++   
Sbjct:   306 KILAANFNVNNFFDRIQDSVFHQYVLQTLSGLPLMEEAERVGRE----------PST--- 352

Query:   262 GSKSLPANWEEGS--GRKEIDMEKLRKLSMETTASTWSMKRLVSYIKSS 308
             G  S     ++G+   +K IDM K+ K+  E   S W+M+ L+  +++S
Sbjct:   353 GHLSFATVVKKGTVKEKKVIDMGKVHKMKREKV-SAWTMRVLMEAVRTS 400

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0008381 "mechanically-gated ion channel activity" evidence=IDA;IMP

GO:0050982 "detection of mechanical stimulus" evidence=IMP

GO:0006820 "anion transport" evidence=IDA

TAIR|locus:2180811 MSL9 "mechanosensitive channel of small conductance-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 2.7e-27, Sum P(4) = 2.7e-27
 Identities = 52/167 (31%), Positives = 94/167 (56%)

Query:   145 LRNCIRNCMWLGLVLRAWTCIFN---EKLHKKNKMLEKVFRALVAVSLGATIWLIKIVLV 201
             L+  ++  +W  LVL AW C+F+   ++  K  + L+ +   +V++ +G+ ++L+K   +
Sbjct:   258 LKKNVQVFIWFSLVLIAWICLFDGDVKRTRKTKRFLDFITWTIVSLLVGSILFLVKTFAL 317

Query:   202 KVLASSFYVTTYFNRMKESVFHHYILETLSGPPKMEGLMANDEEXXXXXXXXXXPNSNLS 261
             KVLAS F V  +F R++ESVFH Y+L+TLSGPP +E     + E             +LS
Sbjct:   318 KVLASKFNVRNFFERIQESVFHQYVLQTLSGPPLIE-----EAENVGRVPST----GHLS 368

Query:   262 GSKSLPANWEEGSGRKEIDMEKLRKLSMETTASTWSMKRLVSYIKSS 308
              +++     ++   +K IDM K+ ++  E   S W+M+ L+  + +S
Sbjct:   369 FTRTKDGKVKD---KKVIDMGKVHRMKQEKV-SAWTMRVLIEAVGTS 411

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0008381 "mechanically-gated ion channel activity" evidence=IMP

GO:0050982 "detection of mechanical stimulus" evidence=IMP

GO:0080167 "response to karrikin" evidence=IEP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2010287 AT1G49260 "AT1G49260" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 9.1e-10, Sum P(2) = 9.1e-10
 Identities = 27/85 (31%), Positives = 51/85 (60%)

Query:   153 MWLGLV--LRAWTCIFNEKLHKKNKMLEKVF-RALVAVSLGATIWLIKIVLVKVLASSFY 209
             +W+ +V  +  W  I + K  K+ K++  V  + + AV + +T+W  K ++    ++ F+
Sbjct:    17 VWMTMVFIITPWFIILSNKATKEQKVVLLVLLQVITAVLIISTLWFTKAIITTCCSAWFH 76

Query:   210 VTTYFNRMKESVFHHYILETLSGPP 234
             +TTY  R++ES+F  Y++E LSG P
Sbjct:    77 LTTYQERIEESLFSWYVIEALSGHP 101

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006863 "purine nucleobase transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002410001 SubName- Full=Chromosome undetermined scaffold_131, whole genome shotgun sequence; (663 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	630
KOG4629	714	consensus Predicted mechanosensitive ion channel [	100.0
PF00924	206	MS_channel: Mechanosensitive ion channel; InterPro	99.34
PRK10334	286	mechanosensitive channel MscS; Provisional	98.78
PRK10929	1109	putative mechanosensitive channel protein; Provisi	98.48
COG0668	316	MscS Small-conductance mechanosensitive channel [C	98.43
PRK11465	741	putative mechanosensitive channel protein; Provisi	98.25
PRK11281	1113	hypothetical protein; Provisional	98.2
PF14812	81	PBP1_TM: Transmembrane domain of transglycosylase	93.18
COG3264	835	Small-conductance mechanosensitive channel [Cell e	92.99
PF00036	29	EF-hand_1: EF hand; InterPro: IPR018248 Many calci	92.64
COG5126	160	FRQ1 Ca2+-binding protein (EF-Hand superfamily) [S	91.69
PF13405	31	EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J	87.27
KOG0027	151	consensus Calmodulin and related proteins (EF-Hand	80.78

>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=2.5e-68  Score=591.91  Aligned_cols=352  Identities=34%  Similarity=0.604  Sum_probs=319.1

Q ss_pred             hhhhhHHHHHHHH-HHHHHHHHhhcccccccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHhh
Q 038775          144 FLRNCIRNCMWLG-LVLRAWTCIFNEKLHKKNK--MLEKVFRALVAVSLGATIWLIKIVLVKVLASSFYVTTYFNRMKES  220 (630)
Q Consensus       144 GLrk~vq~fiWLg-lVLlaW~~lfd~~V~~~~k--~L~~VtKiLv~lfVga~LwLiKkLLVKlIAsSFHvrTYFDRIQEs  220 (630)
                      |+++.+|+|+|+| +++++|+.+||..|.+...  .+.+|+++ +|+|++++.|++||+++|++|++||+++|++||||+
T Consensus       227 ~~~~~vq~~~~l~~lv~law~~l~d~~v~~~~r~~~l~~~~~~-i~lli~~~~~lv~ti~~kv~as~f~~s~~~~rI~e~  305 (714)
T KOG4629|consen  227 GLRKFVQTGIWLGKLVLLAWIFLFDKIVFRKTRAKFLAFVTML-ITLLITEFMWLVKTILMKVIASSFHRSTYFSRIQES  305 (714)
T ss_pred             hhHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhh-hhhhHHHHHhhchhhhhHHHHHHHhHHHHHhhcchh
Confidence            9999999999999 9999999999999988643  79999999 999999999999999999999999999999999999


Q ss_pred             hchhhhhhhccCCCcccccccchHHHHHHhhhcCCCCCCCCCCCCCCCccccCCCCcccchhHhhhccCCCccchhhhhh
Q 038775          221 VFHHYILETLSGPPKMEGLMANDEEKKQLKKKRRKPNSNLSGSKSLPANWEEGSGRKEIDMEKLRKLSMETTASTWSMKR  300 (630)
Q Consensus       221 ~F~qyvL~TLSgpPL~E~~~~~e~e~~~~~~~~~~p~~~~sG~~s~~~~~~~~~~~~~I~~~kL~km~~~~nVSAwtmkR  300 (630)
                      +|+||+|++|||||+.|     +.++..     +       + +..-+-...+.+...|+++++|+++.. ++|||+|+|
T Consensus       306 ~f~q~~l~~Lsg~p~~e-----~~gr~s-----~-------~-~~~~s~~~~r~~s~~i~~~~l~~~~~~-~~sa~~~~~  366 (714)
T KOG4629|consen  306 VFTQEVLETLSGPPREE-----DVGRES-----T-------F-RAIFSPGLSRSGSAKIGMDKLHKIKKK-NVSAWNMRR  366 (714)
T ss_pred             hhhHHHHHHhcCCcccc-----cccccc-----c-------c-eeeccccccchhhcccccchhhhhhHh-hhcHhhhhH
Confidence            99999999999999922     222210     0       0 000000000111223999999999975 599999999


Q ss_pred             hhhhhccCC-------------------------------ccccchhh-----------hhccCChHhHHhhcccccccc
Q 038775          301 LVSYIKSSE-------------------------------KPLQPNVA-----------LMTFFKRVEVHSIFPLFEGAL  338 (630)
Q Consensus       301 L~~~Vr~~~-------------------------------k~IF~NvA-----------l~~F~~~eEA~~AF~lFD~d~  338 (630)
                      +|+.++.++                               ++||.|+|           +++|+.+|+|+.+|++||++.
T Consensus       367 ~~~~~~~~~~t~l~~~~~~s~~~~~~~~~i~s~~~a~~aA~~iF~nv~~p~~~~i~ld~~~~f~~~E~a~~~~slfe~~~  446 (714)
T KOG4629|consen  367 LMTILAAGGLTTLSPGFQLSTSKDSSIIEIRSEKEAKIAARKIFKNVAKPGVILIDLDDLLRFMGDEEAERAFSLFEGAS  446 (714)
T ss_pred             HHHHHhccCcccCCccccccccccchhhhhhhhhhHHHHHHHHHhccCCCCccchhhhhhhhcCCHHHHHHHHHhhhhhc
Confidence            999887654                               89999999           899999999999999999986


Q ss_pred             ccCccchHHHHhHH-------------------------HHhhhhHhHHHHHHHHHhhccccchhHHHHHHhhheeeEE-
Q 038775          339 EIGRVTKHLFRNWA-------------------------KITSTLVMVIIIVVSLLVMKLATTQVVFSVLTQLVLVGWL-  392 (630)
Q Consensus       339 enG~IsKk~lknwv-------------------------ki~~~iv~VIiI~V~LlI~giatt~vl~~vSSQlll~vFV-  392 (630)
                      ++| |||+++++|+                         +++.+|+.+|+.+|||+++|+++++++..++||++.++|+ 
T Consensus       447 ~~~-Itrs~~~~~iv~~~~ERk~L~~tL~d~~taV~kL~~il~~Iv~vv~~~i~lil~~i~~~~~l~~~~sq~v~l~fif  525 (714)
T KOG4629|consen  447 DEN-ITRSSFKEWIVNIYRERKALARTLNDTKTAVNKLDRILNFIVAVVLLVIWLILLGINTSKLLLVISSQLVGLAFIF  525 (714)
T ss_pred             ccC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeeeeecccceeeeeeh
Confidence            777 9999999999                         6889999999999999999999999999999999998887 


Q ss_pred             ------------------------------------------------------cccccccccceecccC-CCCccceEE
Q 038775          393 ------------------------------------------------------FPNAFLLTKTKSNFCR-PEMSDSINL  417 (630)
Q Consensus       393 ------------------------------------------------------~PNSvL~TK~I~NirR-~~m~D~i~~  417 (630)
                                                                            ||||+|++|+|.|+|| |+|+|.++|
T Consensus       526 ~~~~k~~~esiIFlfv~HPyDvGDRv~VDg~~~vVeemnLlsTvF~~~dg~kI~~PNS~L~~k~I~N~rRS~~~~~~v~f  605 (714)
T KOG4629|consen  526 GNIVKELLESIIFLFVMHPYDVGDRVVVDGVNLVVEEMNLLSTVFLRVDGRKIFIPNSVLWTKAISNYRRSPDMGDEVEF  605 (714)
T ss_pred             hhHHHHHHHHHhheeecCCCCCCCeEEEeceEEEEEEeccceEEEEEECCeEEEeecHHHHhhhhhhhhcCccccccEEE
Confidence                                                                  9999999999999999 999999999


Q ss_pred             EEeeCCCHHHHHHHHHHHHHhhhccCCCccccccCCCCchhhhhhhcccCccCCCceeEEeeccccceEEEEEEEEeecC
Q 038775          418 TVDISTSMQTIIALKKAVQINTTTRFPSIFEFSSYSTPTAFIIHCILRANHCNPKHSVTVKERAELNKIRMRLGVQHTIN  497 (630)
Q Consensus       418 ~Vd~~Tp~EkIe~LK~ri~~fl~~~~p~~~E~~~~s~~~dF~~~C~~~~r~~~p~~~v~v~dIed~nkL~L~i~~~HksN  497 (630)
                      +|+++||.|||++||+||.+||+            ++           |+||+|+.++++++++++|+++|+++++|++|
T Consensus       606 ~i~~~T~~~Ki~~Lk~rI~~ylk------------s~-----------~~~~~p~~~~~i~~~e~~n~v~i~v~~~h~~n  662 (714)
T KOG4629|consen  606 LISSSTPFEKIERLKERIAEYLK------------SS-----------PDDYYPDLMVVIEEIEDLNSVKICVVVQHKIN  662 (714)
T ss_pred             EecCCCCHHHHHHHHHHHHHHHh------------cC-----------ccccccchhhHHHhhhhcCcceEEEEEEeecc
Confidence            99999999999999999999999            88           99999999999999999999999999999999


Q ss_pred             ccChhHHHhhHHHHHHHHHHHHHHcCceeeCCCceeEEeecC
Q 038775          498 HQTCAERSIRTSELILELKKIFENLGIKCHLPPQEIHITQLN  539 (630)
Q Consensus       498 wQN~geR~~RRs~lv~eLkk~leeLgI~Y~LppQ~V~l~~~p  539 (630)
                      |||+++||.||++|+++|+++|+||||+|+++|++++++++|
T Consensus       663 ~Qd~~~~~~Rr~~~~~~l~~~~~eLdI~y~l~p~~in~~~~~  704 (714)
T KOG4629|consen  663 FQDMKERWSRRTEFVSALTKIMRELDIEYTLYPLDINLKNLP  704 (714)
T ss_pred             hhhHHHHHhhHHHHHHHHHHHHHHcCcceeecCcchhhhcCC
Confidence            999999999999999999999999999999999999999988

>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation

Probab=99.34  E-value=3.3e-12  Score=121.46  Aligned_cols=147  Identities=21%  Similarity=0.320  Sum_probs=107.5

Q ss_pred             HHhhhhHhHHHHHHHHHhhccccchhHHHHHHhhheeeEE----------------------------------------
Q 038775          353 KITSTLVMVIIIVVSLLVMKLATTQVVFSVLTQLVLVGWL----------------------------------------  392 (630)
Q Consensus       353 ki~~~iv~VIiI~V~LlI~giatt~vl~~vSSQlll~vFV----------------------------------------  392 (630)
                      +++.+++.++.+++.|.++|++.+.++..++...++++|.                                        
T Consensus         2 ~i~~~~~~~~~~~~~l~~~g~~~~~l~~~~g~~~~~i~f~~~~~~~n~~~gi~i~~~~pf~vGD~I~i~~~~G~V~~I~l   81 (206)
T PF00924_consen    2 KIIRIVIIIVGILIILSILGIDVSSLLASLGVLGLAIGFAFQDIISNFISGIIILFERPFKVGDRIEIGGVEGRVEEIGL   81 (206)
T ss_dssp             -HHHHHHHHHHHHHHHHCCT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC-SS-TT-EEESSS-EEEEEEE-S
T ss_pred             hHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCEEEEEEeehHHHhcCc
Confidence            4667777888888889999999887777766655554443                                        


Q ss_pred             --------------cccccccccceecccC--CCCccceEEEEeeCCCHHHHHHHHHHHHHhhhccCCCccccccCCCCc
Q 038775          393 --------------FPNAFLLTKTKSNFCR--PEMSDSINLTVDISTSMQTIIALKKAVQINTTTRFPSIFEFSSYSTPT  456 (630)
Q Consensus       393 --------------~PNSvL~TK~I~NirR--~~m~D~i~~~Vd~~Tp~EkIe~LK~ri~~fl~~~~p~~~E~~~~s~~~  456 (630)
                                    +||+.|.+++|.|+.|  +.++..+.+.|+.+++.++++++.+.+.+.++            ++  
T Consensus        82 ~~t~l~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~v~~~v~~~~~~~~~~~~~~~i~~~~~------------~~--  147 (206)
T PF00924_consen   82 RSTRLRTWDGEIVIIPNSKLISSPIVNYSRSSPYRRVVVEIPVDYDTDPEKIEELREKIEEALR------------SN--  147 (206)
T ss_dssp             SEEEEEETTS-EEEEEHHHHHCS-EEETTT-SSEEEEEEEEEE-TTS----HHHHHHHHHHHHH------------H---
T ss_pred             ceeeeecCCCCEEEEEchheeeEEEEEeeccCCceeeeeeeeEecCCCchHHHHHHHHHHHHHh------------cC--
Confidence                          9999999999999999  89999999999999999999999999999998            55  


Q ss_pred             hhhhhhhcccCcc-CCCceeEEeeccccceEEEEEEEEeecCccChhHHHhhHHHHHHHHHHHHHHcCce
Q 038775          457 AFIIHCILRANHC-NPKHSVTVKERAELNKIRMRLGVQHTINHQTCAERSIRTSELILELKKIFENLGIK  525 (630)
Q Consensus       457 dF~~~C~~~~r~~-~p~~~v~v~dIed~nkL~L~i~~~HksNwQN~geR~~RRs~lv~eLkk~leeLgI~  525 (630)
                               +... .+...+.+.++++ +.+.+.+.+.++.  +++++++..|++++.++.++|++.||+
T Consensus       148 ---------~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~~~~~~~~~~~i~~~i~~~~~~~gI~  205 (206)
T PF00924_consen  148 ---------PYIFKEPEPRVVVDEIGD-SSLEFRIRVYVKN--QDPEKYWEIRSEIRKRILEILEEHGIE  205 (206)
T ss_dssp             ---------TTC-TTS-EEEEEEEE-S-SSEEEEEEEEEEC-----CCHHHHHHHHHHHHHHHHHHHT--
T ss_pred             ---------chhhcCCCCeEEEccccC-CceEEEEEEEEEe--CchhhHHHHHHHHHHHHHHHHHHccCC
Confidence                     3333 3455666666654 5588888777776  788999999999999999999999997

They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.

>PRK10334 mechanosensitive channel MscS; Provisional

Probab=98.78  E-value=8e-08  Score=99.20  Aligned_cols=155  Identities=14%  Similarity=0.224  Sum_probs=112.0

Q ss_pred             HHhhhhHhHHHHHHHHHhhccccchhHHHHHHhhheeeEE----------------------------------------
Q 038775          353 KITSTLVMVIIIVVSLLVMKLATTQVVFSVLTQLVLVGWL----------------------------------------  392 (630)
Q Consensus       353 ki~~~iv~VIiI~V~LlI~giatt~vl~~vSSQlll~vFV----------------------------------------  392 (630)
                      +++-+++.++.+++.|..+|++++.++..++.-.++++|-                                        
T Consensus        71 ~~~~~~i~~~~~~~~l~~lGi~~~~l~a~~G~~glaiG~a~q~~l~N~~sGi~i~~~rpf~vGD~I~i~~~~G~V~~I~~  150 (286)
T PRK10334         71 ALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQI  150 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEECCEEEEEEEEEe
Confidence            3444555566667788888998887766554333322221                                        


Q ss_pred             --------------cccccccccceecccC-CCCccceEEEEeeCCCHHHHHHHHHHHHHhhhccCCCccccccCCCCch
Q 038775          393 --------------FPNAFLLTKTKSNFCR-PEMSDSINLTVDISTSMQTIIALKKAVQINTTTRFPSIFEFSSYSTPTA  457 (630)
Q Consensus       393 --------------~PNSvL~TK~I~NirR-~~m~D~i~~~Vd~~Tp~EkIe~LK~ri~~fl~~~~p~~~E~~~~s~~~d  457 (630)
                                    +||+.+.+..|.|+.| +...-.+++.|+++++.+++.+   .+++-++            +.   
T Consensus       151 r~T~i~t~d~~~v~IPNs~~~~~~i~N~s~~~~rr~~~~v~V~y~~d~~~~~~---il~~~~~------------~~---  212 (286)
T PRK10334        151 FSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQ---ILTNIIQ------------SE---  212 (286)
T ss_pred             EEEEEEcCCCCEEEEcchHhcCCeeEEcCCCCeEEEEEEEEecCCCCHHHHHH---HHHHHHH------------hC---
Confidence                          9999999999999999 8777889999999999877655   4556666            33   


Q ss_pred             hhhhhhcccCcc-CCCceeEEeeccccceEEEEEEEEeecCccChhHHHhhHHHHHHHHHHHHHHcCceeeCCCceeEEe
Q 038775          458 FIIHCILRANHC-NPKHSVTVKERAELNKIRMRLGVQHTINHQTCAERSIRTSELILELKKIFENLGIKCHLPPQEIHIT  536 (630)
Q Consensus       458 F~~~C~~~~r~~-~p~~~v~v~dIed~nkL~L~i~~~HksNwQN~geR~~RRs~lv~eLkk~leeLgI~Y~LppQ~V~l~  536 (630)
                              +.-- .|...+.+.+++|.. +.+.+.+-.+.     ...++.|+++...++++|++-||+...|.+.+++.
T Consensus       213 --------~~vl~~p~p~v~~~~~~dss-i~~~v~~wv~~-----~~~~~~~~~~~~~I~~~f~~~gI~ip~p~~~v~~~  278 (286)
T PRK10334        213 --------DRILKDREMTVRLNELGASS-INFVVRVWSNS-----GDLQNVYWDVLERIKREFDAAGISFPYPQMDVNFK  278 (286)
T ss_pred             --------CceecCCCCEEEEEeeeCce-EEEEEEEEEec-----chhHHHHHHHHHHHHHHHHHCCCcCCCCCeEEEec
Confidence                    2111 366778889988766 44444443332     23567788999999999999999999999999987


Q ss_pred             ecC
Q 038775          537 QLN  539 (630)
Q Consensus       537 ~~p  539 (630)
                      +.+
T Consensus       279 ~~~  281 (286)
T PRK10334        279 RVK  281 (286)
T ss_pred             cCC
Confidence            655

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=98.48  E-value=1.9e-06  Score=102.82  Aligned_cols=116  Identities=14%  Similarity=0.171  Sum_probs=88.2

Q ss_pred             cccccccccceecccC-CC-CccceEEEEeeCCCHHHHHHHHHHHHHhhhccCCCccccccCCCCchhhhhhhcccCcc-
Q 038775          393 FPNAFLLTKTKSNFCR-PE-MSDSINLTVDISTSMQTIIALKKAVQINTTTRFPSIFEFSSYSTPTAFIIHCILRANHC-  469 (630)
Q Consensus       393 ~PNSvL~TK~I~NirR-~~-m~D~i~~~Vd~~Tp~EkIe~LK~ri~~fl~~~~p~~~E~~~~s~~~dF~~~C~~~~r~~-  469 (630)
                      +||+.+.+..|.|+.+ +. ..-.+++.|+++|+.++..   +.+.+-++            ++           +.-. 
T Consensus       971 IPNs~~it~~IiN~S~~d~~~Rv~i~VgV~Y~sDie~v~---~iL~eaa~------------~~-----------~~VL~ 1024 (1109)
T PRK10929        971 VPNKAFITEQFINWSLSDSVTRVVLTIPAPADANSEEVT---EILLTAAR------------RC-----------SLVLD 1024 (1109)
T ss_pred             EEChhhhcCceEecCCCCcceEEEEEEEeCCCCCHHHHH---HHHHHHHH------------hC-----------ccccC
Confidence            9999999999999999 54 4667888899999876655   44444444            22           2211 


Q ss_pred             CCCceeEEeeccccc-eEEEEEEEEeecCccChhHHHhhHHHHHHHHHHHHHHcCceeeCCCceeEEeecCC
Q 038775          470 NPKHSVTVKERAELN-KIRMRLGVQHTINHQTCAERSIRTSELILELKKIFENLGIKCHLPPQEIHITQLNL  540 (630)
Q Consensus       470 ~p~~~v~v~dIed~n-kL~L~i~~~HksNwQN~geR~~RRs~lv~eLkk~leeLgI~Y~LppQ~V~l~~~p~  540 (630)
                      .|...+.+.++.+.. .+.+.+|+.      +.+.++.-|+++...+++.|++-||+...|.+.|++.+.+.
T Consensus      1025 ~P~P~V~~~~fgdssi~~elr~wv~------~~~~~~~v~~el~~~I~~~F~~~GIeIPfPq~~v~i~~~~~ 1090 (1109)
T PRK10929       1025 NPAPEVFLVDLQQGIQIFELRIYAA------EMGHRMPLRHEIHQLILAGFREHGIDMPFPPFQMRLESLGG 1090 (1109)
T ss_pred             CCCCEEEEEecCCCceEEEEEEEEc------ChhhHHHHHHHHHHHHHHHHHHCCCcCCCCCeEEEeecCCC
Confidence            366788889987644 234555542      34678889999999999999999999999999999998863

>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

Probab=98.43  E-value=4.7e-06  Score=83.42  Aligned_cols=116  Identities=22%  Similarity=0.332  Sum_probs=92.9

Q ss_pred             cccccccccceecccC-CCCccceEEEEeeCCCHHHHHHHHHHHHHhhhccCCCccccccCCCCchhhhhhhcccCccCC
Q 038775          393 FPNAFLLTKTKSNFCR-PEMSDSINLTVDISTSMQTIIALKKAVQINTTTRFPSIFEFSSYSTPTAFIIHCILRANHCNP  471 (630)
Q Consensus       393 ~PNSvL~TK~I~NirR-~~m~D~i~~~Vd~~Tp~EkIe~LK~ri~~fl~~~~p~~~E~~~~s~~~dF~~~C~~~~r~~~p  471 (630)
                      +|||.+.+..|.|+.| +.-...+++.|.++++.++...+-.++.+-+.            ..           .. ..|
T Consensus       184 iPNs~i~~~~i~N~s~~~~~~~~~~v~v~~~~~~~~~~~i~~~~~~~~~------------~~-----------~~-~~~  239 (316)
T COG0668         184 IPNSKLFTANVVNYSREPGRRVEVKVGVAYDSDLEKALKILKEVLEELP------------EV-----------LK-IEP  239 (316)
T ss_pred             ccchhhccCceEeCCCCCcEEEEEEEeeccCCCHHHHHHHHHHHHHhcc------------cc-----------cc-cCC
Confidence            9999999999999999 66688899999999999999998888887766            22           00 356


Q ss_pred             CceeEEeeccccceEEEEEEEEeecCccChhHHHhhHHHHHHHHHHHHHHcCceeeCCCceeEEeec
Q 038775          472 KHSVTVKERAELNKIRMRLGVQHTINHQTCAERSIRTSELILELKKIFENLGIKCHLPPQEIHITQL  538 (630)
Q Consensus       472 ~~~v~v~dIed~nkL~L~i~~~HksNwQN~geR~~RRs~lv~eLkk~leeLgI~Y~LppQ~V~l~~~  538 (630)
                      ...+.+.+..+.. +.+.+.+....     ...+..++++...+++++++.||+-..|.+.+.....
T Consensus       240 ~~~v~~~~~~~~~-~~i~v~~~t~~-----~~~~~~~~~~~~~i~~~~~~~gi~i~~p~~~~~~~~~  300 (316)
T COG0668         240 EPVIGVSELGDSG-INIRVRFWTNP-----EDLWSVQRELNLRIKEALEEAGIEIPYPQQSVLLGEL  300 (316)
T ss_pred             CcEEEEeeccCCc-eEEEEEEEecc-----hhHHHHHHHHHHHHHHHHHHcCCCCCCCCeeEECcCC
Confidence            6667777777666 66666554432     2288999999999999999999999999999884443

>PRK11465 putative mechanosensitive channel protein; Provisional

Probab=98.25  E-value=1.5e-05  Score=91.93  Aligned_cols=158  Identities=16%  Similarity=0.114  Sum_probs=108.2

Q ss_pred             HHhhhhHhHHHHHHHHHhhccccchhHHHHHHhhheeeEE----------------------------------------
Q 038775          353 KITSTLVMVIIIVVSLLVMKLATTQVVFSVLTQLVLVGWL----------------------------------------  392 (630)
Q Consensus       353 ki~~~iv~VIiI~V~LlI~giatt~vl~~vSSQlll~vFV----------------------------------------  392 (630)
                      +++.+++.++.+++.|..+|++++.++.+++.-.++++|-                                        
T Consensus       515 ~~~~~~i~~i~~l~vL~~lGi~it~LlA~aGi~GlaiGfaaQ~~l~N~isGi~Il~e~pf~vGD~I~v~g~~GtVe~I~l  594 (741)
T PRK11465        515 NALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDIITGVFIQFENGMNTGDLVTIGPLTGTVERMSI  594 (741)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCEEEECCeEEEEEEEee
Confidence            5566677777777888889999887776665433332221                                        


Q ss_pred             --------------cccccccccceecccCCCCccceEEEEeeCCCHHHHHHH-HHHHHHhhhccCCCccccccCCCCch
Q 038775          393 --------------FPNAFLLTKTKSNFCRPEMSDSINLTVDISTSMQTIIAL-KKAVQINTTTRFPSIFEFSSYSTPTA  457 (630)
Q Consensus       393 --------------~PNSvL~TK~I~NirR~~m~D~i~~~Vd~~Tp~EkIe~L-K~ri~~fl~~~~p~~~E~~~~s~~~d  457 (630)
                                    +||+.+.+  |.|+.|+...-.+++.|+++|+.++..++ ++...+..+             +| +
T Consensus       595 RsT~iRt~dg~~i~IPNs~i~~--v~N~Sr~~~~~~v~v~V~Y~~Didka~~iL~ev~~el~~-------------dp-e  658 (741)
T PRK11465        595 RSVGVRQDTGAYHIIPWSSITT--FANFVRGIGSVVANYDVDRHEDADKANQALKDAVAELME-------------NE-E  658 (741)
T ss_pred             eEEEEEcCCCCEEEEECCccee--eEEeccCceEEEEEEEeCCCCCHHHHHHHHHHHHHHhhc-------------Cc-c
Confidence                          99999975  99999955456678999999999876554 555555433             10 0


Q ss_pred             hhhhhhcccCccCCCceeEEeeccccceEEEEEEEEeecCccChhHHHhhHHHHHHHHHHHHHHcCceeeCCCceeEEee
Q 038775          458 FIIHCILRANHCNPKHSVTVKERAELNKIRMRLGVQHTINHQTCAERSIRTSELILELKKIFENLGIKCHLPPQEIHITQ  537 (630)
Q Consensus       458 F~~~C~~~~r~~~p~~~v~v~dIed~nkL~L~i~~~HksNwQN~geR~~RRs~lv~eLkk~leeLgI~Y~LppQ~V~l~~  537 (630)
                      ....++.     .| ..+.+.++.|.. +.+.+.+.-     +.+..|.-+.++...+|+.|++-||+.  |-+.+++.+
T Consensus       659 ~~~~il~-----~p-~~vgV~~lgdSs-i~lrvr~~t-----~p~~qw~v~rel~~~IK~~Fde~GIeI--P~~tv~v~~  724 (741)
T PRK11465        659 IRGLIIG-----EP-NFAGIVGLTNTA-FTLRVSFTT-----LPLKQWTVRFALDSQVKKHFDLAGVRA--PVQTYQVLP  724 (741)
T ss_pred             ccccccC-----CC-CeEEEEEecCce-EEEEEEEEE-----CcchHHHHHHHHHHHHHHHHHHCCCCC--CCCceEeec
Confidence            0000111     12 235667776664 777777754     346778888999999999999999995  777788877


Q ss_pred             cCC
Q 038775          538 LNL  540 (630)
Q Consensus       538 ~p~  540 (630)
                      .|-
T Consensus       725 ~~~  727 (741)
T PRK11465        725 APG  727 (741)
T ss_pred             CCC
Confidence            654

>PRK11281 hypothetical protein; Provisional

Probab=98.20  E-value=1.7e-05  Score=95.12  Aligned_cols=116  Identities=16%  Similarity=0.205  Sum_probs=88.5

Q ss_pred             cccccccccceecccC-CC-CccceEEEEeeCCCHHHHHHHHHHHHHhhhccCCCccccccCCCCchhhhhhhcccCc-c
Q 038775          393 FPNAFLLTKTKSNFCR-PE-MSDSINLTVDISTSMQTIIALKKAVQINTTTRFPSIFEFSSYSTPTAFIIHCILRANH-C  469 (630)
Q Consensus       393 ~PNSvL~TK~I~NirR-~~-m~D~i~~~Vd~~Tp~EkIe~LK~ri~~fl~~~~p~~~E~~~~s~~~dF~~~C~~~~r~-~  469 (630)
                      +||+.+.+..|.|+.+ +. ..-.+++.|+++|+.+++.   +.+.+-++            ++           ++- -
T Consensus       974 IPNs~~~t~~IiN~S~~~~~~Rv~i~vgV~Y~sDi~~v~---~iL~eaa~------------~~-----------p~Vl~ 1027 (1113)
T PRK11281        974 VPNKAFVTERLINWSLSDTVTRVVIKVGVAYGSDLEKVR---ELLLQAAT------------EN-----------PRVMK 1027 (1113)
T ss_pred             EechhhhcCceEeCCCCCcceEEEEEEEeCCCCCHHHHH---HHHHHHHH------------cC-----------ccccc
Confidence            9999999999999999 54 6788889999999886654   44444555            22           221 1


Q ss_pred             CCCceeEEeeccccc-eEEEEEEEEeecCccChhHHHhhHHHHHHHHHHHHHHcCceeeCCCceeEEeecCC
Q 038775          470 NPKHSVTVKERAELN-KIRMRLGVQHTINHQTCAERSIRTSELILELKKIFENLGIKCHLPPQEIHITQLNL  540 (630)
Q Consensus       470 ~p~~~v~v~dIed~n-kL~L~i~~~HksNwQN~geR~~RRs~lv~eLkk~leeLgI~Y~LppQ~V~l~~~p~  540 (630)
                      .|...+.+.++.|.. .+.+.+|+.      +.+.++.=++++...+++.|++-||+...|.+.|++.+.+.
T Consensus      1028 ~P~P~V~~~~fgdssi~~~lr~wv~------~~~~~~~v~s~L~~~I~~~f~e~GIeIpfPq~~V~i~~~~~ 1093 (1113)
T PRK11281       1028 EPEPQVFFLNFGASTLDHELRLYVR------ELGDRSPTVDELNRRIDRLFRENDINIAFNQLDVFLKNQKG 1093 (1113)
T ss_pred             CCCCEEEEEeccCceEEEEEEEEEc------CHhhHHHHHHHHHHHHHHHHHHCCCcCCCCCeeEEecCCCc
Confidence            466778888887554 345555553      34678888999999999999999999999999999987553

>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A

Probab=93.18  E-value=0.0082  Score=52.83  Aligned_cols=25  Identities=32%  Similarity=0.453  Sum_probs=0.0

Q ss_pred             CCCChhhhhhcCCCCcccccCchhh
Q 038775          108 HVDDNEWDKELEDDSEDEDVGTESK  132 (630)
Q Consensus       108 ~~dd~ew~~~~~~~~d~~~~~~k~k  132 (630)
                      ++||+.+++|.+|+++++.+..|.|
T Consensus        34 D~ddd~~DDD~dDdeeee~m~rK~k   58 (81)
T PF14812_consen   34 DYDDDYEDDDDDDDEEEEPMPRKGK   58 (81)
T ss_dssp             -------------------------
T ss_pred             ccccccccccccchhhccccccccc
Confidence            3344434444433333333444433

>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

Probab=92.99  E-value=1.1  Score=53.29  Aligned_cols=153  Identities=17%  Similarity=0.212  Sum_probs=109.2

Q ss_pred             HHhhhhHhHHHHHHHHHhhccccchhHHHHHHhhheee---------EE-------------------------------
Q 038775          353 KITSTLVMVIIIVVSLLVMKLATTQVVFSVLTQLVLVG---------WL-------------------------------  392 (630)
Q Consensus       353 ki~~~iv~VIiI~V~LlI~giatt~vl~~vSSQlll~v---------FV-------------------------------  392 (630)
                      .++.-++++|-.++-|+-+|++-+++-++++...|...         ||                               
T Consensus       602 t~~~Y~~~~i~~l~~lS~~Gi~lssL~~~~gALsvGiGFGLQ~I~~NFVSGlIiL~ErpvkvGD~It~g~~~G~V~~I~v  681 (835)
T COG3264         602 TLLGYLLIAIGGLVGLSTLGIDLSSLQWLAGALSVGLGFGLQEIVSNFVSGLIILFERPVKVGDTVTIGTVSGTVRKISV  681 (835)
T ss_pred             HHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHhhhhhchhHHHHHHHhhhhhhhheecCcccCCEEEECCceEEEEEEEe
Confidence            45556667777778888899988766555443222222         22                               


Q ss_pred             --------------cccccccccceecccC-C-CCccceEEEEeeCCCHHHHHHHHHHHHHhhhccCCCccccccCCCCc
Q 038775          393 --------------FPNAFLLTKTKSNFCR-P-EMSDSINLTVDISTSMQTIIALKKAVQINTTTRFPSIFEFSSYSTPT  456 (630)
Q Consensus       393 --------------~PNSvL~TK~I~NirR-~-~m~D~i~~~Vd~~Tp~EkIe~LK~ri~~fl~~~~p~~~E~~~~s~~~  456 (630)
                                    +||+.+-|..+.|..= + ..-=.+++.|.++|..|+..++   +.+-.+            .+  
T Consensus       682 RAT~I~~fd~~~vIVPNs~fI~~qV~NWs~~~~~~R~~i~v~vay~sD~~~V~~~---Ll~~A~------------~~--  744 (835)
T COG3264         682 RATTIRTFDRKEVIVPNSAFITEQVINWSLRDTTTRLVIPVGVAYGSDPELVREL---LLEAAR------------EH--  744 (835)
T ss_pred             eEEEEEeCCCCeEEeccHHHHhhheeeeeccCceEEEEEEecccCCCCHHHHHHH---HHHHHH------------hC--
Confidence                          9999999999999876 4 4446788999999998776543   444444            23  


Q ss_pred             hhhhhhhcccCcc-CCCceeEEeeccc-cceEEEEEEEEeecCccChhHHHhhHHHHHHHHHHHHHHcCceeeCCCceeE
Q 038775          457 AFIIHCILRANHC-NPKHSVTVKERAE-LNKIRMRLGVQHTINHQTCAERSIRTSELILELKKIFENLGIKCHLPPQEIH  534 (630)
Q Consensus       457 dF~~~C~~~~r~~-~p~~~v~v~dIed-~nkL~L~i~~~HksNwQN~geR~~RRs~lv~eLkk~leeLgI~Y~LppQ~V~  534 (630)
                               |+-- .|...+.+.++.+ .-..++.+|+.--      +-|.-=|+++-..+.+-|+|-||+-..|+.+|+
T Consensus       745 ---------p~Vl~~P~P~v~f~~fg~s~L~fELr~~v~~~------~~~~~~~~~l~~~I~~~fre~gI~ipfpq~~v~  809 (835)
T COG3264         745 ---------PRVLKDPAPEVFFTAFGASSLDFELRVYVAEL------GDRMPVRSELNRAILDRFRENGIEIPFPQREVR  809 (835)
T ss_pred             ---------CCccCCCCCeeEeecccccceeEEEEEEeecc------ccccchHHHHHHHHHHHHHHcCCCCCCchHheE
Confidence                     3322 4666888888774 4456677776643      334447899999999999999999999999999


Q ss_pred             Eee
Q 038775          535 ITQ  537 (630)
Q Consensus       535 l~~  537 (630)
                      +++
T Consensus       810 l~~  812 (835)
T COG3264         810 LKN  812 (835)
T ss_pred             ecC
Confidence            998

>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand

Probab=92.64  E-value=0.072  Score=38.06  Aligned_cols=26  Identities=19%  Similarity=0.360  Sum_probs=23.4

Q ss_pred             hHHhhccccccccccCccchHHHHhHH
Q 038775          326 EVHSIFPLFEGALEIGRVTKHLFRNWA  352 (630)
Q Consensus       326 EA~~AF~lFD~d~enG~IsKk~lknwv  352 (630)
                      |+.+||..||++ ++|.|+..+++..+
T Consensus         1 E~~~~F~~~D~d-~dG~I~~~Ef~~~~   26 (29)
T PF00036_consen    1 ELKEAFREFDKD-GDGKIDFEEFKEMM   26 (29)
T ss_dssp             HHHHHHHHHSTT-SSSEEEHHHHHHHH
T ss_pred             CHHHHHHHHCCC-CCCcCCHHHHHHHH
Confidence            688999999999 99999999998754

This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....

>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]

Probab=91.69  E-value=0.22  Score=48.68  Aligned_cols=75  Identities=24%  Similarity=0.230  Sum_probs=55.2

Q ss_pred             cccchhHhhhc--cCCCccchhhhhhhhhhhccCC----ccccchhh---hhccCChHhHHhhccccccccccCccchHH
Q 038775          277 KEIDMEKLRKL--SMETTASTWSMKRLVSYIKSSE----KPLQPNVA---LMTFFKRVEVHSIFPLFEGALEIGRVTKHL  347 (630)
Q Consensus       277 ~~I~~~kL~km--~~~~nVSAwtmkRL~~~Vr~~~----k~IF~NvA---l~~F~~~eEA~~AF~lFD~d~enG~IsKk~  347 (630)
                      +-|+-.+|.++  .-..+.|.--..+|++.+-.++    ...|-.+.   +-+..++||...||.+||+| .+|.|+..+
T Consensus        35 G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d-~dG~Is~~e  113 (160)
T COG5126          35 GLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKD-HDGYISIGE  113 (160)
T ss_pred             CCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccCCCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCC-CCceecHHH
Confidence            45666666654  1233456556677777666522    55555555   56888999999999999998 999999999


Q ss_pred             HHhHH
Q 038775          348 FRNWA  352 (630)
Q Consensus       348 lknwv  352 (630)
                      |+.++
T Consensus       114 L~~vl  118 (160)
T COG5126         114 LRRVL  118 (160)
T ss_pred             HHHHH
Confidence            99998

>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B

Probab=87.27  E-value=0.38  Score=33.95  Aligned_cols=27  Identities=15%  Similarity=0.273  Sum_probs=22.6

Q ss_pred             hHHhhccccccccccCccchHHHHhHHH
Q 038775          326 EVHSIFPLFEGALEIGRVTKHLFRNWAK  353 (630)
Q Consensus       326 EA~~AF~lFD~d~enG~IsKk~lknwvk  353 (630)
                      |-+++|..||.+ .+|.|+..+|+++.+
T Consensus         1 ~l~~~F~~~D~d-~dG~I~~~el~~~l~   27 (31)
T PF13405_consen    1 RLREAFKMFDKD-GDGFIDFEELRAILR   27 (31)
T ss_dssp             HHHHHHHHH-TT-SSSEEEHHHHHHHHH
T ss_pred             CHHHHHHHHCCC-CCCcCcHHHHHHHHH
Confidence            457899999998 999999999998763

...

>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]

Probab=80.78  E-value=1.2  Score=41.59  Aligned_cols=30  Identities=13%  Similarity=0.213  Sum_probs=27.1

Q ss_pred             CChHhHHhhccccccccccCccchHHHHhHH
Q 038775          322 FKRVEVHSIFPLFEGALEIGRVTKHLFRNWA  352 (630)
Q Consensus       322 ~~~eEA~~AF~lFD~d~enG~IsKk~lknwv  352 (630)
                      ...+|..+||.+||.+ ++|.||..+|+.-+
T Consensus        82 ~~~~el~eaF~~fD~d-~~G~Is~~el~~~l  111 (151)
T KOG0027|consen   82 ASSEELKEAFRVFDKD-GDGFISASELKKVL  111 (151)
T ss_pred             ccHHHHHHHHHHHccC-CCCcCcHHHHHHHH
Confidence            4567999999999998 99999999999866

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	630
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 4e-06
 Identities = 80/549 (14%), Positives = 160/549 (29%), Gaps = 186/549 (33%)

Query: 15  QQNANNPSMQTELNREPNKILPLEKNSLSFSAPDLHQIPATRKQTLHRLSFSKPKSRLLE 74
           +     PSM T +  E       +++ L        +   +R Q   +L     +  LLE
Sbjct: 99  KTEQRQPSMMTRMYIE-------QRDRLYNDNQVFAKYNVSRLQPYLKL-----RQALLE 146

Query: 75  LNYP---LTAHN-----KTI-----PESNEIEPFLDDNNNSNIYSTHVDDNEW---DKEL 118
           L  P   +         KT        S +++  +D      I+        W       
Sbjct: 147 LR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK----IF--------WLNLKNCN 193

Query: 119 EDDSEDEDVGTESKQRKEIGSPIGDFLRNCIRNCMWLGLVLRAWTCIFNEKLHKKNKMLE 178
             ++  E +     Q     +   D   N       +   LR    +   K ++      
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR---LLKSKPYE------ 244

Query: 179 KVFRALVAVSLGATIWLIKIVLV-----KVLASSFYVTT----YFNRMKESVFHHYILET 229
                L+ +     +   K         K+L     +TT      + +  +   H  L+ 
Sbjct: 245 ---NCLLVLL---NVQNAKAWNAFNLSCKIL-----LTTRFKQVTDFLSAATTTHISLDH 293

Query: 230 LSG---PPKMEGLMAN--DEEKKQLKKKRRKPNSNLSGS----KSLPANWEEGSGR---- 276
            S    P +++ L+    D   + L      P   L+ +      +  +  +G       
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDL------PREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 277 KEIDMEKLRKLSMETTASTWSMKRLVSYIKSSEKPLQPNVALMTFFKRVEVHSIFPLFEG 336
           K ++ +KL  +                 I+SS   L+P       +++        +F+ 
Sbjct: 348 KHVNCDKLTTI-----------------IESSLNVLEPAE-----YRK--------MFD- 376

Query: 337 ALEIGRVTKHLFRNWAKITSTLVMVIIIVVSLLVMKLATTQVVFSVLTQLVLVGWLFPNA 396
            L +       F   A I +       I++SL+   +     V  V+ +L          
Sbjct: 377 RLSV-------FPPSAHIPT-------ILLSLIWFDV-IKSDVMVVVNKLH-------KY 414

Query: 397 FLLTKTKSNFCRPEMSDSI-NLTVDISTSMQTIIAL-KKAVQINTTTRFPSIFEFSSYST 454
            L+ K        E + SI ++ +++   ++   AL +  V                Y+ 
Sbjct: 415 SLVEKQ-----PKESTISIPSIYLELKVKLENEYALHRSIVD--------------HYNI 455

Query: 455 PTAFIIHCILRANHCNPKHSVTVKERAELNKIRMRLGVQHTINHQTCAERSIRTSELILE 514
           P  F       ++   P +                +G  H   H    E      E +  
Sbjct: 456 PKTF------DSDDLIPPY--------LDQYFYSHIG--H---HLKNIEHP----ERMTL 492

Query: 515 LKKIFENLG 523
            + +F +  
Sbjct: 493 FRMVFLDFR 501

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 4e-05
 Identities = 94/598 (15%), Positives = 173/598 (28%), Gaps = 187/598 (31%)

Query: 61  HRLSFSKPKSRLLELNYPLTAHNKTIPESNEIEPFLDDNNNSNIYSTHVDDNEW----DK 116
           H + F        E  Y      K I    E + F+D+ +        V D        +
Sbjct: 5   HHMDFE-----TGEHQY----QYKDILSVFE-DAFVDNFD-----CKDVQDMPKSILSKE 49

Query: 117 ELED--DSEDEDVGT-------ESKQRKEIGSPIGDFLRNCIRNCMWLGLVLRAWTCIFN 167
           E++    S+D   GT        SKQ + +   + + LR    N  +L            
Sbjct: 50  EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR---INYKFLM----------- 95

Query: 168 EKLHKKNKMLEKVFRALVAVSLGATIWLIKIVLVKVLASSFYVTTYFNRMKES--VFHHY 225
             +  + +                            + +  Y+    +R+     VF  Y
Sbjct: 96  SPIKTEQRQ-------------------------PSMMTRMYIE-QRDRLYNDNQVFAKY 129

Query: 226 ILETLSGPPKMEGLMANDEEKKQLKKKRRKPNSNLSGSKSLPANWEEGSGRKEIDMEKLR 285
               +S       L      ++ L + R   N  + G          GSG+  + ++   
Sbjct: 130 ---NVSRLQPYLKL------RQALLELRPAKNVLIDGVL--------GSGKTWVALDVCL 172

Query: 286 KLSMETTAST---WSMKRLVSYIKSSEKPLQPNVALMTFFKRVEVHSIFPLFEGALEIGR 342
              ++        W +   +    S E  L+    L+        + I P +    +   
Sbjct: 173 SYKVQCKMDFKIFW-LN--LKNCNSPETVLEMLQKLL--------YQIDPNWTSRSDHSS 221

Query: 343 VTKHLFRNWAKITSTLVMVIIIVVSLLVMK-LATTQVVFSVLTQLVLVGWLFPNAFLLTK 401
             K    +       L+        LLV+  +   +                 NAF L+ 
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW---------------NAFNLS- 265

Query: 402 TKSNFCRPEMSDSINLTVDISTSMQTIIALKKAVQINTTTRFPSIFEFSSYSTPT----- 456
                C+      I LT    T  + +      +   TTT         + +        
Sbjct: 266 -----CK------ILLT----TRFKQVTD---FLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 457 AFIIHCIL-----RANHCNPKHSVTVKERAELNKIRMRLGVQHTIN--HQTCA--ERSIR 507
              + C            NP+    + E        +R G+    N  H  C      I 
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAES-------IRDGLATWDNWKHVNCDKLTTIIE 360

Query: 508 TSELIL---ELKKIFENLGIKCHLPPQEIHITQLNLNN-WT-------------MPSHSL 550
           +S  +L   E +K+F+ L +    PP   HI  + L+  W              +  +SL
Sbjct: 361 SSLNVLEPAEYRKMFDRLSV---FPP-SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

Query: 551 --RQGKSLAV----LLAVLLKSIFNQSQILKSMIE--NQSACLHTTSLKSLPWDSAYI 600
             +Q K   +    +   L   + N+  + +S+++  N      +  L   P+   Y 
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL-IPPYLDQYF 473

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 4e-05
 Identities = 58/428 (13%), Positives = 119/428 (27%), Gaps = 125/428 (29%)

Query: 3   MAGPDHVVLSVDQQNANNPSMQTELN-----------REPNKILPLEKNSLSFSAPDLHQ 51
           + G     +++D     +  +Q +++             P  +L + +  L    P+   
Sbjct: 158 VLGSGKTWVALDV--CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215

Query: 52  IPATRKQTLHRLSFSKPK-SRLLEL-NYP---LTAHNKTIPESNEIEPFLD--------- 97
                     R+   + +  RLL+   Y    L   N  +  +     F +         
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN--VQNAKAWNAF-NLSCKILLTT 272

Query: 98  -DNNNSNIYS----THVDDNEWDKELEDDSEDED-----VGTESKQ-RKEI--GSP---- 140
                ++  S    TH+  +     L  D E +      +    +   +E+   +P    
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 141 -IGDFLRNCIRNCMWLGLVLRAWTCIFNEKLHKKNKM---------LEKVFRAL------ 184
            I + +R+      W       W  +  +KL    +            K+F  L      
Sbjct: 332 IIAESIRD--GLATW-----DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 185 VAVSLG--ATIWLIKI-----VLVKVLASSFYVTTYFNRMKESVFHHYILETLSGPPKME 237
             +     + IW   I     V+V  L     V         S+     LE         
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-PSIYLE--------- 434

Query: 238 GLMANDEEKKQLKKK---RRKPNSNLSGSKSLPANWEEG--------------SGRKEID 280
            L    E +  L +                 +P  + +                  +   
Sbjct: 435 -LKVKLENEYALHRSIVDHYNIPKTFDSDDLIP-PYLDQYFYSHIGHHLKNIEHPERMTL 492

Query: 281 MEKL--------RKLSMETTASTWS---------MKRLVSYIKSSEKPLQPNV-ALMTFF 322
              +        +K+  ++TA   S         +K    YI  ++   +  V A++ F 
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552

Query: 323 KRVEVHSI 330
            ++E + I
Sbjct: 553 PKIEENLI 560

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	630
2vv5_A	286	MSCS, small-conductance mechanosensitive channel;	99.25
3udc_A	285	Small-conductance mechanosensitive channel, C-TER	99.13
2lmt_A	148	Calmodulin-related protein 97A; spermatogenesis, m	86.96
2lhi_A	176	Calmodulin, serine/threonine-protein phosphatase c	86.65
2lv7_A	100	Calcium-binding protein 7; metal binding protein;	86.61
2b1u_A	71	Calmodulin-like protein 5; CLSP, calmodulin-like S	85.16
2kz2_A	94	Calmodulin, CAM; TR2C, metal binding protein; NMR	84.74
1yx7_A	83	Calsensin, LAN3-6 antigen; calcium-binding protein	84.53
3i5g_B	153	Myosin regulatory light chain LC-2, mantle muscle;	84.3
3fs7_A	109	Parvalbumin, thymic; calcium-binding protein, EF-h	84.19
2ovk_B	153	RLC, myosin regulatory light chain LC-2, mantle mu	83.57
5pal_A	109	Parvalbumin; calcium-binding protein; 1.54A {Triak	83.25
1fi6_A	92	EH domain protein REPS1; EPS15 homology domain, EF	82.94
1qx2_A	76	Vitamin D-dependent calcium-binding protein, INTE;	82.88
1k9u_A	78	Polcalcin PHL P 7; pollen allergen, calcium-bindin	82.61
1bu3_A	109	Calcium-binding protein; 1.65A {Merluccius bilinea	82.17
2ktg_A	85	Calmodulin, putative; ehcam, Ca-binding protein, p	82.1
1tiz_A	67	Calmodulin-related protein, putative; helix-turn-h	82.06
1j7q_A	86	CAVP, calcium vector protein; EF-hand family, calc	81.08
2obh_A	143	Centrin-2; DNA repair complex EF hand superfamily	81.0
3i5g_C	159	Myosin catalytic light chain LC-1, mantle muscle;	80.95
2joj_A	77	Centrin protein; N-terminal domain, centrin soluti	80.64
3j04_B	143	Myosin regulatory light chain 2, smooth muscle MA	80.52
2pvb_A	108	Protein (parvalbumin); calcium binding protein, me	80.22
1rwy_A	109	Parvalbumin alpha; EF-hand, calcium-binding, calci	80.15
2opo_A	86	Polcalcin CHE A 3; calcium-binding protein, dimer,	80.04

>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A

Probab=99.25  E-value=2.9e-11  Score=121.70  Aligned_cols=154  Identities=15%  Similarity=0.241  Sum_probs=122.1

Q ss_pred             HHhhhhHhHHHHHHHHHhhccccchhHHHHHHhhheeeEE----------------------------------------
Q 038775          353 KITSTLVMVIIIVVSLLVMKLATTQVVFSVLTQLVLVGWL----------------------------------------  392 (630)
Q Consensus       353 ki~~~iv~VIiI~V~LlI~giatt~vl~~vSSQlll~vFV----------------------------------------  392 (630)
                      +++.+++.++.+++.|.++|++++.++.+++...++++|.                                        
T Consensus        71 ~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g~~g~aig~a~q~~l~n~~sGi~i~~~~pf~vGD~I~i~g~~G~V~~I~l  150 (286)
T 2vv5_A           71 ALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQI  150 (286)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCSSCTTCEEESSSCEEEEEEECS
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCccCCCEEEECCEEEEEEEEEe
Confidence            6777777778888888999999888887776544443332                                        


Q ss_pred             --------------cccccccccceecccC-CCCccceEEEEeeCCCHHHHHHHHHHHHHhhhccCCCccccccCCCCch
Q 038775          393 --------------FPNAFLLTKTKSNFCR-PEMSDSINLTVDISTSMQTIIALKKAVQINTTTRFPSIFEFSSYSTPTA  457 (630)
Q Consensus       393 --------------~PNSvL~TK~I~NirR-~~m~D~i~~~Vd~~Tp~EkIe~LK~ri~~fl~~~~p~~~E~~~~s~~~d  457 (630)
                                    +||+.|.+..|.|+.| +.....+++.|+++|+.+++   ++.+.+.++            ++   
T Consensus       151 ~~T~i~t~dg~~v~IPNs~l~~~~i~N~s~~~~~r~~~~v~v~y~~d~~~v---~~~l~~~~~------------~~---  212 (286)
T 2vv5_A          151 FSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQV---KQILTNIIQ------------SE---  212 (286)
T ss_dssp             SEEEEECTTSCEEEEEHHHHHTSCEEESSSSSEEEEEEEEEECTTSCHHHH---HHHHHHHHH------------HC---
T ss_pred             EEEEEEeCCCCEEEechHHHhhCceEECCCCCcEEEEEEEEEcCCCCHHHH---HHHHHHHHH------------hC---
Confidence                          9999999999999999 87788899999999998765   556778877            34   


Q ss_pred             hhhhhhcccCc-cCCCceeEEeeccccceEEEEEEEEeecCccChhHHHhhHHHHHHHHHHHHHHcCceeeCCCceeEEe
Q 038775          458 FIIHCILRANH-CNPKHSVTVKERAELNKIRMRLGVQHTINHQTCAERSIRTSELILELKKIFENLGIKCHLPPQEIHIT  536 (630)
Q Consensus       458 F~~~C~~~~r~-~~p~~~v~v~dIed~nkL~L~i~~~HksNwQN~geR~~RRs~lv~eLkk~leeLgI~Y~LppQ~V~l~  536 (630)
                              ++- ..|...+.+.++++. .+.+.+.+..+.     +.++..|+++..+++++|++.||++..|.+++++.
T Consensus       213 --------~~vl~~p~p~v~v~~~~~~-~i~~~v~~~~~~-----~~~~~~~~~l~~~i~~~~~~~gI~ip~P~~~v~~~  278 (286)
T 2vv5_A          213 --------DRILKDREMTVRLNELGAS-SINFVVRVWSNS-----GDLQNVYWDVLERIKREFDAAGISFPYPQMDVNFK  278 (286)
T ss_dssp             --------TTBCTTSCEEEEEEEECSS-SEEEEEEEEEET-----TTHHHHHHHHHHHHHHHHHHHTCCCCCCEEEEEEE
T ss_pred             --------cccccCCCCEEEEEEecCC-eEEEEEEEEEcc-----chHHHHHHHHHHHHHHHHHHCCCcCCCCceEEEec
Confidence                    222 246778899998864 466666655443     35789999999999999999999999999999998


Q ss_pred             ec
Q 038775          537 QL  538 (630)
Q Consensus       537 ~~  538 (630)
                      +.
T Consensus       279 ~~  280 (286)
T 2vv5_A          279 RV  280 (286)
T ss_dssp             CC
T ss_pred             cC
Confidence            74

>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*

Probab=99.13  E-value=4.8e-10  Score=112.61  Aligned_cols=157  Identities=12%  Similarity=0.215  Sum_probs=113.7

Q ss_pred             HHhhhhHhHHHHHHHHHhhccccchhHHHHHHhhheeeEE----------------------------------------
Q 038775          353 KITSTLVMVIIIVVSLLVMKLATTQVVFSVLTQLVLVGWL----------------------------------------  392 (630)
Q Consensus       353 ki~~~iv~VIiI~V~LlI~giatt~vl~~vSSQlll~vFV----------------------------------------  392 (630)
                      +++.+++.++.+++.|.++|++++.++.+++.-.++++|-                                        
T Consensus        70 ~~~~~~i~~~~~~~~l~~~g~~~~~l~a~~g~~g~aig~a~q~~l~n~~~Gi~i~~~~pf~vGD~I~i~~~~G~V~~I~l  149 (285)
T 3udc_A           70 NAVRYIIYFLAGASILKLFNIDMTSLLAVAGIGSLAIGFGAQNLVKDMISGFFIIFEDQFSVGDYVTINGISGTVEEIGL  149 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSCCTTCEEEETTEEEEEEEECS
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCCEEEECCEEEEEEEeee
Confidence            4556666777777788889999888777665444333332                                        


Q ss_pred             --------------cccccccccceecccCCCCccceEEEEeeCCCHHHHH-HHHHHHHHhhhccCCCccccccCCCCch
Q 038775          393 --------------FPNAFLLTKTKSNFCRPEMSDSINLTVDISTSMQTII-ALKKAVQINTTTRFPSIFEFSSYSTPTA  457 (630)
Q Consensus       393 --------------~PNSvL~TK~I~NirR~~m~D~i~~~Vd~~Tp~EkIe-~LK~ri~~fl~~~~p~~~E~~~~s~~~d  457 (630)
                                    +||+.+.  .|.|+.|+.+...+++.|+++++.++.. .+++.+.+..+            ..   
T Consensus       150 ~~T~i~t~d~~~v~iPN~~l~--~i~N~s~~~~~~~~~v~v~~~~d~~~v~~~l~~i~~~~~~------------~~---  212 (285)
T 3udc_A          150 RVTKIRGFSDGLHIIPNGEIK--MVTNLTKDSMMAVVNIAFPIDEDVDKIIEGLQEICEEVKK------------SR---  212 (285)
T ss_dssp             SEEEEEETTTEEEEEEGGGCS--CEEECSSSCEEEEEEEEEETTSCHHHHHHHHHHHHHHHHH------------HC---
T ss_pred             eEEEEecCCCCEEEecccccc--cccccCCCCceEEEEEeeecCCCHHHHHHHHHHHHHHHHh------------cc---
Confidence                          9999994  5999999556667999999999998854 45555555544            11   


Q ss_pred             hhhhhhcccCccCCCceeEEeeccccceEEEEEEEEeecCccChhHHHhhHHHHHHHHHHHHHHcCceeeCCCceeEEee
Q 038775          458 FIIHCILRANHCNPKHSVTVKERAELNKIRMRLGVQHTINHQTCAERSIRTSELILELKKIFENLGIKCHLPPQEIHITQ  537 (630)
Q Consensus       458 F~~~C~~~~r~~~p~~~v~v~dIed~nkL~L~i~~~HksNwQN~geR~~RRs~lv~eLkk~leeLgI~Y~LppQ~V~l~~  537 (630)
                              +....|...+.+.++.|. ++.+.+++.     -+.+.++.-|+++..+++++|++.||+...|.|.||+++
T Consensus       213 --------~~~~~~~~~v~~~~~~~s-~i~~~v~~~-----~~~~~~~~~~~~l~~~I~~~f~~~gI~ipfP~~~v~~~~  278 (285)
T 3udc_A          213 --------DDLIEGPTVLGITDMQDS-KLVIMVYAK-----TQPMQKWAVERDIRYRVKKMFDQKNISFPYPQMDVNFKR  278 (285)
T ss_dssp             --------SSBSSCCEEEEEEEEETT-EEEEEEEEE-----ESTTCHHHHHHHHHHHHHHHHHHTTCCCCCCCCEEEEEE
T ss_pred             --------cccccCcccccccccCCC-EEEEEEEEE-----ECcchHHHHHHHHHHHHHHHHHHCCCcCcCCCEEEEeCc
Confidence                    112233455667787765 477777653     334567889999999999999999999999999999998


Q ss_pred             cCC
Q 038775          538 LNL  540 (630)
Q Consensus       538 ~p~  540 (630)
                      .|.
T Consensus       279 ~~e  281 (285)
T 3udc_A          279 VKE  281 (285)
T ss_dssp             C--
T ss_pred             CCC
Confidence            763

>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A

Probab=86.96  E-value=0.43  Score=41.38  Aligned_cols=30  Identities=17%  Similarity=0.184  Sum_probs=26.9

Q ss_pred             CChHhHHhhccccccccccCccchHHHHhHH
Q 038775          322 FKRVEVHSIFPLFEGALEIGRVTKHLFRNWA  352 (630)
Q Consensus       322 ~~~eEA~~AF~lFD~d~enG~IsKk~lknwv  352 (630)
                      .+.++..+||..||.+ ++|.|++.+|+.++
T Consensus        80 ~~~~~l~~aF~~~D~d-~~G~I~~~El~~~l  109 (148)
T 2lmt_A           80 DTEEEMREAFKIFDRD-GDGFISPAELRFVM  109 (148)
T ss_dssp             TTHHHHHHHHHHHHSS-CSSEECHHHHHHHH
T ss_pred             CcHHHHHHHHHHHCCC-CcCcCcHHHHHHHH
Confidence            4467899999999998 99999999999876

>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}

Probab=86.65  E-value=0.44  Score=43.41  Aligned_cols=76  Identities=12%  Similarity=0.118  Sum_probs=46.5

Q ss_pred             CcccchhHhhhcc--CCCccchhhhhhhhhhhccCC--ccccchhh--hhc----cCChHhHHhhccccccccccCccch
Q 038775          276 RKEIDMEKLRKLS--METTASTWSMKRLVSYIKSSE--KPLQPNVA--LMT----FFKRVEVHSIFPLFEGALEIGRVTK  345 (630)
Q Consensus       276 ~~~I~~~kL~km~--~~~nVSAwtmkRL~~~Vr~~~--k~IF~NvA--l~~----F~~~eEA~~AF~lFD~d~enG~IsK  345 (630)
                      .+.|+.+.|...-  ...+.+...+..++..+-..+  .--|..+.  ...    -.++++..+||.+||.+ ++|.|++
T Consensus        25 dG~I~~~El~~~l~~lg~~~~~~~~~~~~~~~d~d~~~~i~~~ef~~~~~~~~~~~~~~~~l~~aF~~fD~d-~~G~I~~  103 (176)
T 2lhi_A           25 NGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALMSRQLKSNDSEQELLEAFKVFDKN-GDGLISA  103 (176)
T ss_dssp             SSCBCHHHHHHHHHHHTCCCCHHHHHHHHTTTCSSCSSSBCTTHHHHHHTSSCCSSHHHHHHHHHHHHHCSS-CSSSBCH
T ss_pred             CCCCCHHHHHHHHHHcCCChhHHHHHHHHHHhCcCCCccchHHHHHHHHHHhcccCCcHHHHHHHHHHhCCC-CCCcCcH
Confidence            3457777765431  122355556666666544332  22222222  111    11346799999999998 9999999


Q ss_pred             HHHHhHH
Q 038775          346 HLFRNWA  352 (630)
Q Consensus       346 k~lknwv  352 (630)
                      .+|+.++
T Consensus       104 ~el~~~l  110 (176)
T 2lhi_A          104 AELKHVL  110 (176)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999976

>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}

Probab=86.61  E-value=0.32  Score=41.31  Aligned_cols=29  Identities=17%  Similarity=0.290  Sum_probs=25.8

Q ss_pred             hHhHHhhccccccccccCccchHHHHhHHH
Q 038775          324 RVEVHSIFPLFEGALEIGRVTKHLFRNWAK  353 (630)
Q Consensus       324 ~eEA~~AF~lFD~d~enG~IsKk~lknwvk  353 (630)
                      .+|.++||..||.+ ++|.|++.+|+.+++
T Consensus        35 ~~el~~~F~~~D~d-~~G~I~~~El~~~l~   63 (100)
T 2lv7_A           35 LEEIREAFKVFDRD-GNGFISKQELGTAMR   63 (100)
T ss_dssp             HHHHHHHHHHTCSS-CSSCBCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC-CCCcCCHHHHHHHHH
Confidence            35789999999998 999999999999774

>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}

Probab=85.16  E-value=0.42  Score=35.82  Aligned_cols=30  Identities=17%  Similarity=0.206  Sum_probs=26.8

Q ss_pred             ChHhHHhhccccccccccCccchHHHHhHHH
Q 038775          323 KRVEVHSIFPLFEGALEIGRVTKHLFRNWAK  353 (630)
Q Consensus       323 ~~eEA~~AF~lFD~d~enG~IsKk~lknwvk  353 (630)
                      +.++..++|..||.+ ++|.|++.+++.+++
T Consensus         4 ~~~~l~~~F~~~D~d-~~G~i~~~el~~~l~   33 (71)
T 2b1u_A            4 GLEDLQVAFRAFDQD-GDGHITVDELRRAMA   33 (71)
T ss_dssp             THHHHHHHHTTSCCS-SSSEEEHHHHHHHGG
T ss_pred             cHHHHHHHHHHHCCC-CCCcCcHHHHHHHHH
Confidence            467899999999998 999999999998773

>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}

Probab=84.74  E-value=0.47  Score=38.93  Aligned_cols=32  Identities=13%  Similarity=0.104  Sum_probs=28.0

Q ss_pred             CChHhHHhhccccccccccCccchHHHHhHHHH
Q 038775          322 FKRVEVHSIFPLFEGALEIGRVTKHLFRNWAKI  354 (630)
Q Consensus       322 ~~~eEA~~AF~lFD~d~enG~IsKk~lknwvki  354 (630)
                      ...++..++|.+||.+ ++|.|++.+|+.+++-
T Consensus        26 ~~~~~l~~~F~~~D~d-~~G~I~~~El~~~l~~   57 (94)
T 2kz2_A           26 DSEEEIREAFRVEDKD-GNGYISAAELRHVMTN   57 (94)
T ss_dssp             SCHHHHHHHHHHHCTT-CCSCBCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHCCC-CcCcCCHHHHHHHHHH
Confidence            3467899999999998 9999999999998743

>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A

Probab=84.53  E-value=0.4  Score=37.29  Aligned_cols=31  Identities=16%  Similarity=0.238  Sum_probs=27.1

Q ss_pred             ChHhHHhhccccccccccCccchHHHHhHHHH
Q 038775          323 KRVEVHSIFPLFEGALEIGRVTKHLFRNWAKI  354 (630)
Q Consensus       323 ~~eEA~~AF~lFD~d~enG~IsKk~lknwvki  354 (630)
                      ..++...+|..||.+ ++|.|++.+++.+++-
T Consensus         5 ~~~~l~~~F~~~D~d-~~G~i~~~el~~~l~~   35 (83)
T 1yx7_A            5 VKAELEAAFKKLDAN-GDGYVTALELQTFMVT   35 (83)
T ss_dssp             SCTHHHHHHHHHSSS-CSSSCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCC-CCCcCcHHHHHHHHHH
Confidence            356899999999998 9999999999998743

>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B

Probab=84.30  E-value=0.52  Score=42.05  Aligned_cols=29  Identities=10%  Similarity=0.331  Sum_probs=26.4

Q ss_pred             ChHhHHhhccccccccccCccchHHHHhHH
Q 038775          323 KRVEVHSIFPLFEGALEIGRVTKHLFRNWA  352 (630)
Q Consensus       323 ~~eEA~~AF~lFD~d~enG~IsKk~lknwv  352 (630)
                      ++++..+||.+||.+ ++|.||+.+|+..+
T Consensus        83 ~~~~l~~aF~~fD~d-~~G~I~~~el~~~l  111 (153)
T 3i5g_B           83 PEDALRNAFSMFDED-GQGFIPEDYLKDLL  111 (153)
T ss_dssp             CHHHHHHHHHTTCSS-CSSCCCHHHHHHHH
T ss_pred             cHHHHHHHHhccccC-CCCeEeHHHHHHHH
Confidence            467899999999998 99999999999866

>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A

Probab=84.19  E-value=0.55  Score=38.37  Aligned_cols=31  Identities=10%  Similarity=0.259  Sum_probs=25.6

Q ss_pred             CChHhHHhhccccccccccCccchHHHHhHHH
Q 038775          322 FKRVEVHSIFPLFEGALEIGRVTKHLFRNWAK  353 (630)
Q Consensus       322 ~~~eEA~~AF~lFD~d~enG~IsKk~lknwvk  353 (630)
                      ...++...||..||.+ ++|.|++.+++.+++
T Consensus        39 ~~~~~l~~~F~~~D~d-~~G~i~~~el~~~l~   69 (109)
T 3fs7_A           39 KTPDQIKKVFGILDQD-KSGFIEEEELQLFLK   69 (109)
T ss_dssp             CCHHHHHHHHHHHSTT-CSSSBCHHHHHTTGG
T ss_pred             CcHHHHHHHHHHHCCC-CCCeEeHHHHHHHHH
Confidence            3567888999999988 899999999888664

>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4

Probab=83.25  E-value=0.5  Score=38.61  Aligned_cols=32  Identities=13%  Similarity=0.256  Sum_probs=28.2

Q ss_pred             ChHhHHhhccccccccccCccchHHHHhHHHHh
Q 038775          323 KRVEVHSIFPLFEGALEIGRVTKHLFRNWAKIT  355 (630)
Q Consensus       323 ~~eEA~~AF~lFD~d~enG~IsKk~lknwvki~  355 (630)
                      ..++...+|.+||.+ ++|.|++.+++.+++-+
T Consensus        39 ~~~~l~~~F~~~D~d-~~G~i~~~el~~~l~~~   70 (109)
T 5pal_A           39 TDAQVKEVFEILDKD-QSGFIEEEELKGVLKGF   70 (109)
T ss_dssp             CHHHHHHHHHHHCTT-CSSEECHHHHHTHHHHH
T ss_pred             cHHHHHHHHHHHCCC-CCCcCcHHHHHHHHHHH
Confidence            468899999999998 99999999999987543

>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6

Probab=82.94  E-value=0.59  Score=38.40  Aligned_cols=28  Identities=7%  Similarity=-0.012  Sum_probs=24.7

Q ss_pred             HhHHhhccccccccccCccchHHHHhHHH
Q 038775          325 VEVHSIFPLFEGALEIGRVTKHLFRNWAK  353 (630)
Q Consensus       325 eEA~~AF~lFD~d~enG~IsKk~lknwvk  353 (630)
                      ++..+||.+||++ ++|.|+..+++...+
T Consensus         9 ~~~~~~F~~~D~d-~dG~I~~~el~~~l~   36 (92)
T 1fi6_A            9 QYYVNQFKTIQPD-LNGFIPGSAAKEFFT   36 (92)
T ss_dssp             HHHHHHHTTTCCS-TTCEEEHHHHHHHHH
T ss_pred             HHHHHHHHHHCCC-CCCcCcHHHHHHHHH
Confidence            4578899999998 999999999998774

>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A

Probab=82.88  E-value=0.6  Score=35.43  Aligned_cols=31  Identities=13%  Similarity=0.221  Sum_probs=27.3

Q ss_pred             ChHhHHhhcccc-cccccc-CccchHHHHhHHHH
Q 038775          323 KRVEVHSIFPLF-EGALEI-GRVTKHLFRNWAKI  354 (630)
Q Consensus       323 ~~eEA~~AF~lF-D~d~en-G~IsKk~lknwvki  354 (630)
                      +.++...+|..| |.+ ++ |.|++.+++.+++-
T Consensus         3 ~~~~l~~~F~~~~D~d-~~~G~i~~~el~~~l~~   35 (76)
T 1qx2_A            3 SPEEIKGAFEVFAAKE-GDPNQISKEELKLVMQT   35 (76)
T ss_dssp             CHHHHHHHHHHHHTSS-SCTTSEEHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcccC-CCcCeECHHHHHHHHHH
Confidence            467899999999 988 89 99999999998754

>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10

Probab=82.61  E-value=0.46  Score=36.62  Aligned_cols=30  Identities=13%  Similarity=0.257  Sum_probs=26.0

Q ss_pred             hHhHHhhccccccccccCccchHHHHhHHHH
Q 038775          324 RVEVHSIFPLFEGALEIGRVTKHLFRNWAKI  354 (630)
Q Consensus       324 ~eEA~~AF~lFD~d~enG~IsKk~lknwvki  354 (630)
                      +++...+|..||.+ ++|.|++.+++.+++-
T Consensus         2 ~~~l~~~F~~~D~~-~~G~i~~~el~~~l~~   31 (78)
T 1k9u_A            2 ADDMERIFKRFDTN-GDGKISLSELTDALRT   31 (78)
T ss_dssp             -CHHHHHHHHHCTT-CSSEECHHHHHHHHHH
T ss_pred             hHHHHHHHHHHCCC-CCCcCcHHHHHHHHHH
Confidence            46789999999998 9999999999998744

>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4

Probab=82.17  E-value=1.2  Score=36.36  Aligned_cols=31  Identities=6%  Similarity=0.249  Sum_probs=27.0

Q ss_pred             ChHhHHhhccccccccccCccchHHHHhHHHH
Q 038775          323 KRVEVHSIFPLFEGALEIGRVTKHLFRNWAKI  354 (630)
Q Consensus       323 ~~eEA~~AF~lFD~d~enG~IsKk~lknwvki  354 (630)
                      ..++...||..||.+ ++|.|++.+++.+++-
T Consensus        40 ~~~~l~~~F~~~D~d-~~G~I~~~el~~~l~~   70 (109)
T 1bu3_A           40 SADDIKKAFFVIDQD-KSGFIEEDELKLFLQV   70 (109)
T ss_dssp             CHHHHHHHHHHHCTT-CSSSEEHHHHHTHHHH
T ss_pred             hHHHHHHHHHHHCCC-CCCcCcHHHHHHHHHH
Confidence            467899999999998 9999999999987743

>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5

Probab=82.06  E-value=0.49  Score=34.92  Aligned_cols=28  Identities=21%  Similarity=0.374  Sum_probs=24.8

Q ss_pred             HhHHhhccccccccccCccchHHHHhHHH
Q 038775          325 VEVHSIFPLFEGALEIGRVTKHLFRNWAK  353 (630)
Q Consensus       325 eEA~~AF~lFD~d~enG~IsKk~lknwvk  353 (630)
                      ++..++|..||.+ ++|.|+..+++.+++
T Consensus         1 ~~l~~~F~~~D~d-~~G~i~~~el~~~l~   28 (67)
T 1tiz_A            1 SSAKRVFEKFDKN-KDGKLSLDEFREVAL   28 (67)
T ss_dssp             CTHHHHHHHHCTT-SSSCEEHHHHHHHHH
T ss_pred             CHHHHHHHHHCCC-CCCcCcHHHHHHHHH
Confidence            4678999999998 999999999998774

>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A

Probab=81.08  E-value=0.74  Score=36.21  Aligned_cols=29  Identities=14%  Similarity=0.056  Sum_probs=25.6

Q ss_pred             HhHHhhccccccccccCccchHHHHhHHHH
Q 038775          325 VEVHSIFPLFEGALEIGRVTKHLFRNWAKI  354 (630)
Q Consensus       325 eEA~~AF~lFD~d~enG~IsKk~lknwvki  354 (630)
                      ++..++|.+||.+ ++|.|++.+|+.+++-
T Consensus        14 ~~l~~~F~~~D~d-~~G~I~~~el~~~l~~   42 (86)
T 1j7q_A           14 DECMKIFDIFDRN-AENIAPVSDTMDMLTK   42 (86)
T ss_dssp             HHHHHHHHHHSTT-TTSCBCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCC-CCCcCcHHHHHHHHHH
Confidence            5688999999998 9999999999998743

>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A

Probab=81.00  E-value=0.74  Score=39.45  Aligned_cols=29  Identities=28%  Similarity=0.507  Sum_probs=26.1

Q ss_pred             hHhHHhhccccccccccCccchHHHHhHHH
Q 038775          324 RVEVHSIFPLFEGALEIGRVTKHLFRNWAK  353 (630)
Q Consensus       324 ~eEA~~AF~lFD~d~enG~IsKk~lknwvk  353 (630)
                      .+++.+||.+||.+ ++|.|++.+|+.+++
T Consensus        78 ~~~l~~~F~~~D~d-~~G~I~~~el~~~l~  106 (143)
T 2obh_A           78 KEEILKAFKLFDDD-ETGKISFKNLKRVAK  106 (143)
T ss_dssp             HHHHHHHHHHHCTT-CSSSBCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCC-CCCcCcHHHHHHHHH
Confidence            46789999999998 999999999999773

>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C

Probab=80.95  E-value=0.67  Score=41.59  Aligned_cols=29  Identities=21%  Similarity=0.234  Sum_probs=26.4

Q ss_pred             ChHhHHhhccccccccccCccchHHHHhHH
Q 038775          323 KRVEVHSIFPLFEGALEIGRVTKHLFRNWA  352 (630)
Q Consensus       323 ~~eEA~~AF~lFD~d~enG~IsKk~lknwv  352 (630)
                      ..++..+||.+||.+ ++|.|++.+|+..+
T Consensus        83 ~~~~l~~aF~~fD~d-~~G~I~~~el~~~l  111 (159)
T 3i5g_C           83 AADEFMEAFKTFDRE-GQGLISSAEIRNVL  111 (159)
T ss_dssp             CHHHHHHHHHHHCTT-SSSEECHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcC-CCCcCcHHHHHHHH
Confidence            467899999999998 99999999999866

>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}

Probab=80.64  E-value=0.72  Score=35.20  Aligned_cols=30  Identities=20%  Similarity=0.421  Sum_probs=26.1

Q ss_pred             hHhHHhhccccccccccCccchHHHHhHHHH
Q 038775          324 RVEVHSIFPLFEGALEIGRVTKHLFRNWAKI  354 (630)
Q Consensus       324 ~eEA~~AF~lFD~d~enG~IsKk~lknwvki  354 (630)
                      .++...+|..||.+ ++|.|++.+++.+++-
T Consensus         6 ~~~l~~~F~~~D~d-~~G~i~~~el~~~l~~   35 (77)
T 2joj_A            6 KQEIKEAFDLFDTN-KTGSIDYHELKVAMRA   35 (77)
T ss_dssp             HHHHHHHHHHHCCS-SSSEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCC-CCCCCcHHHHHHHHHH
Confidence            35688999999998 9999999999998743

>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}

Probab=80.52  E-value=1.9  Score=36.13  Aligned_cols=31  Identities=13%  Similarity=0.205  Sum_probs=27.1

Q ss_pred             CChHhHHhhccccccccccCccchHHHHhHHH
Q 038775          322 FKRVEVHSIFPLFEGALEIGRVTKHLFRNWAK  353 (630)
Q Consensus       322 ~~~eEA~~AF~lFD~d~enG~IsKk~lknwvk  353 (630)
                      ...+++..||..||.+ ++|.||+.+++.+++
T Consensus        73 ~~~~~l~~~F~~~D~d-~~G~I~~~El~~~l~  103 (143)
T 3j04_B           73 DPEDVIRNAFACFDEE-ASGFIHEDHLRELLT  103 (143)
T ss_dssp             CCHHHHHHHHTTSCSS-SCCCCCTTTHHHHHH
T ss_pred             CcHHHHHHHHHHHCCC-CCCeEcHHHHHHHHH
Confidence            3568899999999998 999999999998773

>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A

Probab=80.22  E-value=0.62  Score=37.98  Aligned_cols=31  Identities=10%  Similarity=0.179  Sum_probs=27.2

Q ss_pred             ChHhHHhhccccccccccCccchHHHHhHHHH
Q 038775          323 KRVEVHSIFPLFEGALEIGRVTKHLFRNWAKI  354 (630)
Q Consensus       323 ~~eEA~~AF~lFD~d~enG~IsKk~lknwvki  354 (630)
                      ..++.+.||..||.+ ++|.|++.+|+.+++-
T Consensus        39 ~~~~l~~~F~~~D~d-~~G~I~~~el~~~l~~   69 (108)
T 2pvb_A           39 SLDDVKKAFYVIDQD-KSGFIEEDELKLFLQN   69 (108)
T ss_dssp             CHHHHHHHHHHHCTT-CSSSBCHHHHHTGGGG
T ss_pred             HHHHHHHHHHHHCCC-CCCcCCHHHHHHHHHH
Confidence            467899999999998 9999999999987643

>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A

Probab=80.15  E-value=0.76  Score=37.42  Aligned_cols=32  Identities=13%  Similarity=0.195  Sum_probs=28.1

Q ss_pred             ChHhHHhhccccccccccCccchHHHHhHHHHh
Q 038775          323 KRVEVHSIFPLFEGALEIGRVTKHLFRNWAKIT  355 (630)
Q Consensus       323 ~~eEA~~AF~lFD~d~enG~IsKk~lknwvki~  355 (630)
                      ..++...||..||.+ ++|.|++.+|+.+++-+
T Consensus        39 ~~~~l~~~F~~~D~d-~~G~I~~~el~~~l~~~   70 (109)
T 1rwy_A           39 SADDVKKVFHILDKD-KSGFIEEDELGSILKGF   70 (109)
T ss_dssp             CHHHHHHHHHHHSTT-CSSEECHHHHHTHHHHH
T ss_pred             hHHHHHHHHHHHCCC-CCCeEcHHHHHHHHHHH
Confidence            467899999999998 99999999999987543

>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A

Probab=80.04  E-value=0.75  Score=36.05  Aligned_cols=29  Identities=17%  Similarity=0.288  Sum_probs=25.7

Q ss_pred             HhHHhhccccccccccCccchHHHHhHHHH
Q 038775          325 VEVHSIFPLFEGALEIGRVTKHLFRNWAKI  354 (630)
Q Consensus       325 eEA~~AF~lFD~d~enG~IsKk~lknwvki  354 (630)
                      ++...+|..||.+ ++|.|++.+++.+++-
T Consensus        11 ~~l~~~F~~~D~d-~~G~i~~~el~~~l~~   39 (86)
T 2opo_A           11 ADRERIFKRFDTN-GDGKISSSELGDALKT   39 (86)
T ss_dssp             HHHHHHHHHHCTT-CSSEEEHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCC-CCCCcCHHHHHHHHHH
Confidence            5689999999998 9999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	630
d2vv5a2	101	Mechanosensitive channel protein MscS (YggB), C-te	97.09
d2hf5a1	33	Troponin C {Human (Homo sapiens), cardiac isoform	96.87
d2fcea1	61	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	90.59
d1fw4a_	65	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	89.83
d1oqpa_	77	Caltractin (centrin 2) {Green algae (Chlamydomonas	89.43
d1jc2a_	75	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	88.13
d5pala_	109	Parvalbumin {Leopard shark (Triakis semifasciata)	87.19
d1fi5a_	81	Troponin C {Chicken (Gallus gallus), cardiac isofo	86.88
d1qx2a_	76	Calbindin D9K {Cow (Bos taurus) [TaxId: 9913]}	86.66
d1tiza_	67	Calmodulin-related protein T21P5.17 {Thale cress (	84.72
d1rwya_	109	Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}	84.7
d1pvaa_	109	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	83.73
d1c7va_	68	Calcium vector protein {Amphioxus (Branchiostoma l	83.49
d2mysc_	145	Myosin Regulatory Chain {Chicken (Gallus gallus) [	80.13
d1avsa_	81	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	80.02

>d2vv5a2 d.58.43.1 (A:180-280) Mechanosensitive channel protein MscS (YggB), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Mechanosensitive channel protein MscS (YggB), C-terminal domain
family: Mechanosensitive channel protein MscS (YggB), C-terminal domain
domain: Mechanosensitive channel protein MscS (YggB), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.0017  Score=52.86  Aligned_cols=95  Identities=12%  Similarity=0.204  Sum_probs=68.6

Q ss_pred             cceEEEEeeCCCHHHHHHHHHHHHHhhhccCCCccccccCCCCchhhhhhhcccCccCCCceeEEeeccccceEEEEEEE
Q 038775          413 DSINLTVDISTSMQTIIALKKAVQINTTTRFPSIFEFSSYSTPTAFIIHCILRANHCNPKHSVTVKERAELNKIRMRLGV  492 (630)
Q Consensus       413 D~i~~~Vd~~Tp~EkIe~LK~ri~~fl~~~~p~~~E~~~~s~~~dF~~~C~~~~r~~~p~~~v~v~dIed~nkL~L~i~~  492 (630)
                      -.+++.|+++|+.+++.++   +.+=++            +.     ..|+     =.|...+.+.++.+.. +.+.+.+
T Consensus         7 ~~~~i~v~y~~d~~~v~~i---l~~~~~------------~~-----~~v~-----~~p~p~v~~~~~~~s~-i~~~v~~   60 (101)
T d2vv5a2           7 NEFIIGVAYDSDIDQVKQI---LTNIIQ------------SE-----DRIL-----KDREMTVRLNELGASS-INFVVRV   60 (101)
T ss_dssp             EEEEEEECTTSCHHHHHHH---HHHHHH------------HC-----TTBC-----TTSCEEEEEEEECSSS-EEEEEEE
T ss_pred             EEEEEEEccCCCHHHHHHH---HHHHHH------------hC-----hhhh-----cccCchhhcccCCCce-EEEEEEE
Confidence            4578999999998876655   333344            22     0011     1456778888887765 6666655


Q ss_pred             EeecCccChhHHHhhHHHHHHHHHHHHHHcCceeeCCCceeEEeec
Q 038775          493 QHTINHQTCAERSIRTSELILELKKIFENLGIKCHLPPQEIHITQL  538 (630)
Q Consensus       493 ~HksNwQN~geR~~RRs~lv~eLkk~leeLgI~Y~LppQ~V~l~~~  538 (630)
                      .-+.     +.++.-|+++..+++++|++.||+-..|.|.|+++.+
T Consensus        61 w~~~-----~~~~~~~~~l~~~I~~~l~~~gI~ip~P~~~v~~~~~  101 (101)
T d2vv5a2          61 WSNS-----GDLQNVYWDVLERIKREFDAAGISFPYPQMDVNFKRV  101 (101)
T ss_dssp             EEET-----TTHHHHHHHHHHHHHHHHHHHTCCCCCCEEEEEEECC
T ss_pred             Eecc-----hHHHHHHHHHHHHHHHHHHHcCCcCCCCcEEEEEecC
Confidence            3332     2357788999999999999999999999999999864

>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=96.87  E-value=0.0002  Score=50.39  Aligned_cols=28  Identities=18%  Similarity=0.342  Sum_probs=25.7

Q ss_pred             ChHhHHhhccccccccccCccchHHHHhH
Q 038775          323 KRVEVHSIFPLFEGALEIGRVTKHLFRNW  351 (630)
Q Consensus       323 ~~eEA~~AF~lFD~d~enG~IsKk~lknw  351 (630)
                      ++||..+||.+||+| ++|.|+..+|+.-
T Consensus         1 seeel~eAF~~FDkD-g~G~Is~~EL~~v   28 (33)
T d2hf5a1           1 SEEEIREAFRVFDKD-GNGYISAAELRHV   28 (33)
T ss_dssp             CHHHHHHHHHHHSSS-CCSCBCHHHHHHH
T ss_pred             CHHHHHHHHHHhCCC-CCCcCcHHHHHHH
Confidence            478999999999999 9999999999873

>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.59  E-value=0.05  Score=40.59  Aligned_cols=27  Identities=19%  Similarity=0.313  Sum_probs=25.3

Q ss_pred             HhHHhhccccccccccCccchHHHHhHH
Q 038775          325 VEVHSIFPLFEGALEIGRVTKHLFRNWA  352 (630)
Q Consensus       325 eEA~~AF~lFD~d~enG~IsKk~lknwv  352 (630)
                      ||.++||.+||.+ ++|.|++.+|+.++
T Consensus         1 Eel~~aF~~fD~~-~~G~I~~~el~~~l   27 (61)
T d2fcea1           1 EDFVKAFQVFDKE-STGKVSVGDLRYML   27 (61)
T ss_dssp             HHHHHHHHHHCTT-CCSCEEHHHHHHHH
T ss_pred             ChHHHHHHHHCCC-CCCeEeHHHHHHHH
Confidence            6889999999998 99999999999977

>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.83  E-value=0.059  Score=40.58  Aligned_cols=29  Identities=17%  Similarity=0.322  Sum_probs=26.4

Q ss_pred             ChHhHHhhccccccccccCccchHHHHhHH
Q 038775          323 KRVEVHSIFPLFEGALEIGRVTKHLFRNWA  352 (630)
Q Consensus       323 ~~eEA~~AF~lFD~d~enG~IsKk~lknwv  352 (630)
                      ++||.++||.+||.+ ++|.|++.+|+...
T Consensus         1 Seeel~~aF~~fD~d-~~G~I~~~el~~~l   29 (65)
T d1fw4a_           1 SEEEIREAFRVFDKD-GNGYISAAELRHVM   29 (65)
T ss_dssp             CCHHHHHHHHHHCTT-CSSEECHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCC-CCCcCCHHHHHHHH
Confidence            468999999999998 99999999999855

>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Caltractin (centrin 2)
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=89.43  E-value=0.058  Score=41.66  Aligned_cols=30  Identities=33%  Similarity=0.470  Sum_probs=27.0

Q ss_pred             ChHhHHhhccccccccccCccchHHHHhHHH
Q 038775          323 KRVEVHSIFPLFEGALEIGRVTKHLFRNWAK  353 (630)
Q Consensus       323 ~~eEA~~AF~lFD~d~enG~IsKk~lknwvk  353 (630)
                      +++|.++||.+||.+ ++|.|++.+|+..++
T Consensus         7 ~~e~l~~~F~~~D~d-~~G~I~~~el~~~l~   36 (77)
T d1oqpa_           7 SREEILKAFRLFDDD-NSGTITIKDLRRVAK   36 (77)
T ss_dssp             HHHHHHHHHHHHCTT-CSSSEEHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCC-CCCEechHHHHHHHH
Confidence            467899999999998 999999999999873

>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=88.13  E-value=0.11  Score=40.22  Aligned_cols=31  Identities=13%  Similarity=0.097  Sum_probs=28.0

Q ss_pred             cCChHhHHhhccccccccccCccchHHHHhHH
Q 038775          321 FFKRVEVHSIFPLFEGALEIGRVTKHLFRNWA  352 (630)
Q Consensus       321 F~~~eEA~~AF~lFD~d~enG~IsKk~lknwv  352 (630)
                      -.+++|..+||..||.+ ++|.|++++|+..+
T Consensus         5 ~~~eeel~~~F~~fD~~-~~G~I~~~el~~~l   35 (75)
T d1jc2a_           5 GKSEEELANCFRIFDKN-ADGFIDIEELGEIL   35 (75)
T ss_dssp             CCCHHHHHHHHHHHCCS-TTSSEEHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHcCC-CcCeEcHHHHHHHH
Confidence            35689999999999998 99999999999876

>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis semifasciata) [TaxId: 30493]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Leopard shark (Triakis semifasciata) [TaxId: 30493]

Probab=87.19  E-value=0.15  Score=42.36  Aligned_cols=31  Identities=10%  Similarity=0.210  Sum_probs=26.9

Q ss_pred             cCChHhHHhhccccccccccCccchHHHHhHH
Q 038775          321 FFKRVEVHSIFPLFEGALEIGRVTKHLFRNWA  352 (630)
Q Consensus       321 F~~~eEA~~AF~lFD~d~enG~IsKk~lknwv  352 (630)
                      -.++++..+||.+||++ ++|.|++.+|+..+
T Consensus        37 ~~~~~~l~~~F~~~D~d-~~G~I~~~El~~~l   67 (109)
T d5pala_          37 GKTDAQVKEVFEILDKD-QSGFIEEEELKGVL   67 (109)
T ss_dssp             TCCHHHHHHHHHHHCTT-CSSEECHHHHHTHH
T ss_pred             CCCHHHHHHHHhhhcCC-CCCeEcHHHHHHHH
Confidence            34578899999999998 99999999998755

>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]

Probab=86.88  E-value=0.15  Score=39.94  Aligned_cols=31  Identities=13%  Similarity=0.164  Sum_probs=27.9

Q ss_pred             cCChHhHHhhccccccccccCccchHHHHhHH
Q 038775          321 FFKRVEVHSIFPLFEGALEIGRVTKHLFRNWA  352 (630)
Q Consensus       321 F~~~eEA~~AF~lFD~d~enG~IsKk~lknwv  352 (630)
                      ..++++..+||..||.+ ++|.|+..+|+.+.
T Consensus        11 ~~~ee~l~~~F~~~D~d-~~G~I~~~el~~~l   41 (81)
T d1fi5a_          11 GKTEEELSDLFRMFDKN-ADGYIDLEELKIML   41 (81)
T ss_dssp             CCCHHHHHHHHHHHCSS-CSSEECHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHcCC-CCCcccHHHHHHHH
Confidence            34678899999999998 99999999999977

>d1qx2a_ a.39.1.1 (A:) Calbindin D9K {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calbindin D9K
domain: Calbindin D9K
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.66  E-value=0.14  Score=39.39  Aligned_cols=31  Identities=13%  Similarity=0.223  Sum_probs=26.3

Q ss_pred             ChHhHHhhccccccccc-cCccchHHHHhHHH
Q 038775          323 KRVEVHSIFPLFEGALE-IGRVTKHLFRNWAK  353 (630)
Q Consensus       323 ~~eEA~~AF~lFD~d~e-nG~IsKk~lknwvk  353 (630)
                      ++||.++||.+||.+.+ +|.|++.+|+..++
T Consensus         3 s~eel~~~F~~fd~~~~~~G~I~~~El~~~l~   34 (76)
T d1qx2a_           3 SPEEIKGAFEVFAAKEGDPNQISKEELKLVMQ   34 (76)
T ss_dssp             CHHHHHHHHHHHHTSSSCTTSEEHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcccCCCCCEECHHHHHHHHH
Confidence            57999999999987643 59999999999773

>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin-related protein T21P5.17
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.72  E-value=0.17  Score=38.09  Aligned_cols=28  Identities=21%  Similarity=0.376  Sum_probs=25.1

Q ss_pred             hHHhhccccccccccCccchHHHHhHHHH
Q 038775          326 EVHSIFPLFEGALEIGRVTKHLFRNWAKI  354 (630)
Q Consensus       326 EA~~AF~lFD~d~enG~IsKk~lknwvki  354 (630)
                      .|++||..||.+ ++|.|++++|+..++-
T Consensus         2 ~~r~~F~~~D~d-~~G~I~~~El~~~l~~   29 (67)
T d1tiza_           2 SAKRVFEKFDKN-KDGKLSLDEFREVALA   29 (67)
T ss_dssp             THHHHHHHHCTT-SSSCEEHHHHHHHHHH
T ss_pred             hHHHHHHHHCCC-CcCcCcHHHHHHHHHH
Confidence            589999999998 9999999999987743

>d1rwya_ a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=84.70  E-value=0.28  Score=40.35  Aligned_cols=34  Identities=12%  Similarity=0.213  Sum_probs=29.0

Q ss_pred             hccCChHhHHhhccccccccccCccchHHHHhHHH
Q 038775          319 MTFFKRVEVHSIFPLFEGALEIGRVTKHLFRNWAK  353 (630)
Q Consensus       319 ~~F~~~eEA~~AF~lFD~d~enG~IsKk~lknwvk  353 (630)
                      ..-.++++.+.||.+||.+ ++|.|++.+|+..++
T Consensus        35 ~~~~~~~~~~~~F~~~D~d-~~G~I~~~El~~~l~   68 (109)
T d1rwya_          35 LKKKSADDVKKVFHILDKD-KSGFIEEDELGSILK   68 (109)
T ss_dssp             GGGSCHHHHHHHHHHHSTT-CSSEECHHHHHTHHH
T ss_pred             cccCCHHHHHHHhhcccCC-CCCcCcHHHHHHHHH
Confidence            3445678899999999998 999999999998774

>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=83.73  E-value=0.26  Score=40.83  Aligned_cols=30  Identities=10%  Similarity=0.214  Sum_probs=24.3

Q ss_pred             CChHhHHhhccccccccccCccchHHHHhHH
Q 038775          322 FKRVEVHSIFPLFEGALEIGRVTKHLFRNWA  352 (630)
Q Consensus       322 ~~~eEA~~AF~lFD~d~enG~IsKk~lknwv  352 (630)
                      .++++.++||.+||.+ ++|.|++.+|+..+
T Consensus        38 ~~~~~~~~~F~~~D~d-~~G~I~~~El~~~l   67 (109)
T d1pvaa_          38 MSANDVKKVFKAIDAD-ASGFIEEEELKFVL   67 (109)
T ss_dssp             SCHHHHHHHHHHHCTT-CSSSBCHHHHHTGG
T ss_pred             CCHHHHHHHhhCccCC-CcCeEcHHHHHHHH
Confidence            3567788889999888 88999988888755

>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium vector protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

Probab=83.49  E-value=0.17  Score=38.52  Aligned_cols=28  Identities=18%  Similarity=0.262  Sum_probs=25.2

Q ss_pred             hHhHHhhccccccccccCccchHHHHhHH
Q 038775          324 RVEVHSIFPLFEGALEIGRVTKHLFRNWA  352 (630)
Q Consensus       324 ~eEA~~AF~lFD~d~enG~IsKk~lknwv  352 (630)
                      +||..+||.+||.+ ++|.|+..+|+...
T Consensus         1 eeel~~~F~~~D~d-~~G~I~~~el~~~l   28 (68)
T d1c7va_           1 EEEILRAFKVFDAN-GDGVIDFDEFKFIM   28 (68)
T ss_dssp             CHHHHHHHHHHSCS-GGGEECHHHHHHHS
T ss_pred             CHHHHHHHHHHcCC-CcCeEcHHHHHHHH
Confidence            47899999999998 99999999998855

>d2mysc_ a.39.1.5 (C:) Myosin Regulatory Chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Regulatory Chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=80.13  E-value=0.38  Score=39.86  Aligned_cols=30  Identities=17%  Similarity=0.263  Sum_probs=26.9

Q ss_pred             ChHhHHhhccccccccccCccchHHHHhHHH
Q 038775          323 KRVEVHSIFPLFEGALEIGRVTKHLFRNWAK  353 (630)
Q Consensus       323 ~~eEA~~AF~lFD~d~enG~IsKk~lknwvk  353 (630)
                      ..||-++||.+||.+ ++|.|+..+++..++
T Consensus         2 ~~eelke~F~~~D~d-~~G~I~~~el~~~l~   31 (145)
T d2mysc_           2 AADDFKEAFLLFDRT-GDAKITASQVGDIAR   31 (145)
T ss_pred             CHHHHHHHHHHHcCC-CCCeECHHHHHHHHH
Confidence            468999999999998 999999999998664

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=80.02  E-value=0.34  Score=37.76  Aligned_cols=31  Identities=16%  Similarity=0.355  Sum_probs=25.8

Q ss_pred             cCChH---hHHhhccccccccccCccchHHHHhHH
Q 038775          321 FFKRV---EVHSIFPLFEGALEIGRVTKHLFRNWA  352 (630)
Q Consensus       321 F~~~e---EA~~AF~lFD~d~enG~IsKk~lknwv  352 (630)
                      +++++   |.++||.+||.+ ++|.|+..+|+...
T Consensus         7 ~Lt~~~i~el~~~F~~~D~d-~~G~I~~~el~~~l   40 (81)
T d1avsa_           7 FLSEEMIAEFKAAFDMFDAD-GGGDISTKELGTVM   40 (81)
T ss_dssp             HBCHHHHHHHHHHHHHHCTT-CSSEECHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHcCC-CCCeEchhHHHHHH
Confidence            34554   467899999998 99999999998866