Citrus Sinensis ID: 038778

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------
Protein Sequence
MESLMGFRFQPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICSLEPWDLAGASKTESEDRVCYFFCKPYYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASKKAKIGWVMH
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHcccccccccEEEccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccEEEEEcEEEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHccccccEEEEEcEEEEccccccccHHccccccccEEEEEccccccccccccccHHccccEEEEccccccEEccccEEEEEEEEEEEEcccccccccccEEEc
Coil and Loop (DISEMBL)
meslmgfrfqpsnEQIFCLLekkrlnphfshhtikdiddicslepwdlagasktesedrvcyffckpyykykkstrahrrtnagywkvtgrgskiktrnglsgtkKILTfkyhgpaskkakigwvmh
Flexible Loop (DISEMBL)
meslmgfrfqpsNEQIFCLLEKKRLNPHFSHHTIKDIDDICSLEPWDLAgasktesedrvcYFFCKPYykykkstrahrrtnagywkvtgrgskiktrnglsgtkkiltfkyhgpaskkakigwvmh
Low Complexity Region (SEG)
MESLMGFRFQPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICSLEPWDLAGASKTESEDRVcyffckpyykykkSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASKKAKIGWVMH
Disordered region (IsUnstruct)
************NEQIFCLLEKKRLNPHFSHHTIKDIDDICSLEPWDLAGASKTESEDRVCYFFCKPYYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGP******IGW***
Disordered Region (DISOPRED)
MESLMGFRFQPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICSLEPWDLAGASKTESEDRVCYFFCKPYYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASKKAKIGWVMH
Disordered Region (DISEMBL)
MESLMGFRFQPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICSLEPWDLAGASKTESEDRVCYFFCKPYYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASKKAKIGWVMH
Disordered Region (DISPRO)
*ESLMGFRFQPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICSLEPWDLAGASKTESEDRVCYFFCKPYYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASKKAKI*W***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESLMGFRFQPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICSLEPWDLAGASKTESEDRVCYFFCKPYYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASKKAKIGWVMH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	127	2.2.26 [Sep-21-2011]
O81913	359	NAC domain-containing pro	no	no	0.968	0.342	0.386	7e-17
O81914	362	NAC domain-containing pro	no	no	0.968	0.339	0.378	2e-16
Q84K00	567	NAC domain-containing pro	no	no	0.944	0.211	0.373	3e-16
Q9FLJ2	336	NAC domain-containing pro	no	no	0.968	0.366	0.406	3e-16
Q9FWX2	395	NAC domain-containing pro	no	no	0.944	0.303	0.411	8e-16
Q5CD17	396	NAC domain-containing pro	no	no	0.929	0.297	0.374	1e-14
Q9FRV4	310	Protein CUP-SHAPED COTYLE	no	no	0.960	0.393	0.419	2e-14
Q93VY3	297	NAC domain-containing pro	no	no	0.929	0.397	0.390	9e-14
Q9M126	457	NAC domain-containing pro	no	no	0.984	0.273	0.363	1e-13
O04017	375	Protein CUP-SHAPED COTYLE	no	no	0.929	0.314	0.4	1e-13

>sp|O81913|NAC4_ARATH NAC domain-containing protein 4 OS=Arabidopsis thaliana GN=NAC004 PE=2 SV=2

 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/132 (38%), Positives = 70/132 (53%), Gaps = 9/132 (6%)

Query: 1   MESLMGFRFQPSNEQIFC-LLEKKRLNPHFSH-HTIKDIDDICSLEPWDLAGASKTESED 58
           M + +GFRF+P++E+I    L  K L+   SH   +    DICS EPWDL   S  +S D
Sbjct: 1   MMNPVGFRFRPNDEEIVDHYLRPKNLDSDTSHVDEVISTVDICSFEPWDLPSKSMIKSRD 60

Query: 59  RVCYFFCKPYYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLS---GTKKILTFKYHGP 115
            V YFF     KY +  +  RRTN+G+WK TG+   +  + G     G K++L FK    
Sbjct: 61  GVWYFFSVKEMKYNRGDQQRRRTNSGFWKKTGKTMTVMRKRGNREKIGEKRVLVFKNR-- 118

Query: 116 ASKKAKIGWVMH 127
               +K  WVMH
Sbjct: 119 --DGSKTDWVMH 128

Arabidopsis thaliana (taxid: 3702)

>sp|O81914|NAC5_ARATH NAC domain-containing protein 5 OS=Arabidopsis thaliana GN=NAC005 PE=2 SV=2

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 72/132 (54%), Gaps = 9/132 (6%)

Query: 1   MESLMGFRFQPSNEQIFCL-LEKKRLNPHFSH-HTIKDIDDICSLEPWDLAGASKTESED 58
           M + +GFRF+P++ +I  + L  K L  + SH   +    DICS +PWDL   S+ ++ D
Sbjct: 1   MANPVGFRFRPTDGEIVDIYLRPKNLESNTSHVDEVISTVDICSFDPWDLPSHSRMKTRD 60

Query: 59  RVCYFFCKPYYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLS---GTKKILTFKYHGP 115
           +V YFF +   KY K  R  R+T +G+WK TG    I  + G     G K++L FK HG 
Sbjct: 61  QVWYFFGRKENKYGKGDRQIRKTKSGFWKKTGVTMDIMRKTGDREKIGEKRVLVFKNHG- 119

Query: 116 ASKKAKIGWVMH 127
               +K  W MH
Sbjct: 120 ---GSKSDWAMH 128

Arabidopsis thaliana (taxid: 3702)

>sp|Q84K00|NAC78_ARATH NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/123 (37%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 6   GFRFQPSNEQIF-CLLEKKRLNPHFSHHTIKDIDDICSLEPWDLAGASKTESEDRVCYFF 64
           GFRF P++E++    L++K  N  F    I  + DI   EPWDL   SK +S D   YFF
Sbjct: 12  GFRFHPTDEELVRYYLKRKVCNKPFKFDAIS-VTDIYKSEPWDLPDKSKLKSRDLEWYFF 70

Query: 65  CKPYYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASKKAKIGW 124
                KY   ++ +R T  GYWK TG+  +I+  + + G KK L + + G A +  +  W
Sbjct: 71  SMLDKKYSNGSKTNRATEKGYWKTTGKDREIRNGSRVVGMKKTLVY-HKGRAPRGERTNW 129

Query: 125 VMH 127
           VMH
Sbjct: 130 VMH 132

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLJ2|NC100_ARATH NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/128 (40%), Positives = 68/128 (53%), Gaps = 5/128 (3%)

Query: 1   MESLMGFRFQPSNEQIFC-LLEKKRLNPHFSHHTIKDIDDICSLEPWDLAGASKTESEDR 59
           M+   GFRF P++E++    L KK L+  FS   I ++D +   EPW+L   +K   ++ 
Sbjct: 14  MDLPPGFRFHPTDEELITHYLHKKVLDTSFSAKAIGEVD-LNKSEPWELPWMAKMGEKE- 71

Query: 60  VCYFFCKPYYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASKK 119
             YFFC    KY    R +R T AGYWK TG+  +I     L G KK L F Y G A K 
Sbjct: 72  -WYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKSLVGMKKTLVF-YRGRAPKG 129

Query: 120 AKIGWVMH 127
            K  WVMH
Sbjct: 130 QKTNWVMH 137

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWX2|NAC7_ARATH NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2

 Score = 82.4 bits (202), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 51/124 (41%), Positives = 65/124 (52%), Gaps = 4/124 (3%)

Query: 6   GFRFQPSNEQIF-CLLEKKRLNPHFSHHTIKDIDDICSLEPWDLAGASKTESEDRV-CYF 63
           GFRF P++E++    L KK  +       IKDID +  +EPWDL    K   E++   YF
Sbjct: 10  GFRFHPTDEELVDYYLRKKVASKRIEIDFIKDID-LYKIEPWDLQELCKIGHEEQSDWYF 68

Query: 64  FCKPYYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASKKAKIG 123
           F     KY   TR +R T AG+WK TGR   I  R+ L G +K L F Y G A    K  
Sbjct: 69  FSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRHSLIGMRKTLVF-YKGRAPNGQKSD 127

Query: 124 WVMH 127
           W+MH
Sbjct: 128 WIMH 131

Transcription factor probably involved in xylem formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5CD17|NAC77_ORYSJ NAC domain-containing protein 77 OS=Oryza sativa subsp. japonica GN=NAC77 PE=2 SV=2

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/139 (37%), Positives = 65/139 (46%), Gaps = 21/139 (15%)

Query: 6   GFRFQPSN-EQIFCLLEKKRLNPHFSHHTIKDIDDICSLEPWDLAGASKTESEDRVCYFF 64
           GFRF P++ E I   L +K LNP F+   I ++D +   EPWDL   SK +  ++  YFF
Sbjct: 22  GFRFHPTDAEVILSYLLQKLLNPSFTSLPIGEVD-LNKCEPWDLP--SKAKMGEKEWYFF 78

Query: 65  CKPYYKYKKSTRAHRRTNAGYWKVTGR----------------GSKIKTRNGLSGTKKIL 108
                KY    R +R T  GYWK TG+                G     +  L G KK L
Sbjct: 79  SHKDMKYPTGMRTNRATKEGYWKATGKDREIFRQPAAVNTSSYGGSSNKKKQLVGMKKTL 138

Query: 109 TFKYHGPASKKAKIGWVMH 127
            F Y G A K  K  WVMH
Sbjct: 139 VF-YMGRAPKGTKTNWVMH 156

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FRV4|NAC54_ARATH Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thaliana GN=NAC054 PE=1 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 71/131 (54%), Gaps = 9/131 (6%)

Query: 2   ESLM--GFRFQPSNEQIFCL-LEKKRLNPHFSHHTIKDIDDICSLEPWDLAGASKTESED 58
           ESLM  GFRF P++E++    L KK L+ +FS   I  +D +   EPW+L    K +  +
Sbjct: 17  ESLMPPGFRFHPTDEELITYYLLKKVLDSNFSCAAISQVD-LNKSEPWELP--EKAKMGE 73

Query: 59  RVCYFFCKPYYKYKKSTRAHRRTNAGYWKVTGRGSKIKTR--NGLSGTKKILTFKYHGPA 116
           +  YFF     KY    R +R T AGYWK TG+  +IK+     L G KK L F Y G A
Sbjct: 74  KEWYFFTLRDRKYPTGLRTNRATEAGYWKATGKDREIKSSKTKSLLGMKKTLVF-YKGRA 132

Query: 117 SKKAKIGWVMH 127
            K  K  WVMH
Sbjct: 133 PKGEKSCWVMH 143

Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Seems to act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93VY3|NAC72_ARATH NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 61/123 (49%), Gaps = 5/123 (4%)

Query: 6   GFRFQPSNEQIFC-LLEKKRLNPHFSHHTIKDIDDICSLEPWDLAGASKTESEDRVCYFF 64
           GFRF P++E++    L +K    HFS   I DID +   +PWDL   SK    ++  YFF
Sbjct: 17  GFRFYPTDEELLVQYLCRKVAGYHFSLQVIGDID-LYKFDPWDLP--SKALFGEKEWYFF 73

Query: 65  CKPYYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASKKAKIGW 124
                KY   +R +R   +GYWK TG    I       G KK L F Y G A K  K  W
Sbjct: 74  SPRDRKYPNGSRPNRVAGSGYWKATGTDKIITADGRRVGIKKALVF-YAGKAPKGTKTNW 132

Query: 125 VMH 127
           +MH
Sbjct: 133 IMH 135

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M126|NAC69_ARATH NAC domain-containing protein 69 OS=Arabidopsis thaliana GN=NAC69 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/132 (36%), Positives = 66/132 (50%), Gaps = 7/132 (5%)

Query: 1   MESLMGFRFQPSNEQIFCLLEKKRL--NPHFSHHTIKDIDDICSLEPWDLAGASKTESED 58
           ++ L+G+RF P+ E++     K ++          I +I+ ICS +P  L   SK +S+D
Sbjct: 2   VKDLVGYRFYPTGEELINHYLKNKILGKTWLVDEAISEIN-ICSYDPIYLPSLSKIKSDD 60

Query: 59  RVCYFFCKPYYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLS---GTKKILTFKYHGP 115
            V YFFC   Y   K     R T++GYWK TG   KIK + G     G KK L + Y G 
Sbjct: 61  PVWYFFCPKEYTSAKKKVTKRTTSSGYWKATGVDRKIKDKRGNRGEIGIKKTLVY-YEGR 119

Query: 116 ASKKAKIGWVMH 127
             K     WVMH
Sbjct: 120 VPKGVWTPWVMH 131

Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis mediated by calpain or its functional homolog. Regulates cytokinin signaling during cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|O04017|NAC98_ARATH Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 66/125 (52%), Gaps = 7/125 (5%)

Query: 6   GFRFQPSNEQIFC-LLEKKRLNPHFSHHTIKDIDDICSLEPWDLAGASKTESEDRVCYFF 64
           GFRF P++E++    L +K L+  FS   I ++D +   EPW L G +K   ++   YFF
Sbjct: 20  GFRFHPTDEELITHYLLRKVLDGCFSSRAIAEVD-LNKCEPWQLPGRAKMGEKE--WYFF 76

Query: 65  CKPYYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRN--GLSGTKKILTFKYHGPASKKAKI 122
                KY    R +R T AGYWK TG+  +I +     L G KK L F Y G A K  K 
Sbjct: 77  SLRDRKYPTGLRTNRATEAGYWKATGKDREIFSSKTCALVGMKKTLVF-YKGRAPKGEKS 135

Query: 123 GWVMH 127
            WVMH
Sbjct: 136 NWVMH 140

Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
224118488	316	NAC domain protein, IPR003441 [Populus t	0.952	0.382	0.435	2e-19
297798362	507	predicted protein [Arabidopsis lyrata su	0.984	0.246	0.410	4e-19
225453680	560	PREDICTED: uncharacterized protein LOC10	0.984	0.223	0.434	4e-19
186516558	534	NAC transcription factor-like 9 [Arabido	0.984	0.234	0.410	5e-19
334187196	533	NAC transcription factor-like 9 [Arabido	0.984	0.234	0.410	5e-19
302399031	850	NAC domain class transcription factor [M	0.992	0.148	0.397	6e-19
224061527	537	NAC domain protein, IPR003441 [Populus t	0.992	0.234	0.390	6e-19
42567421	512	NAC transcription factor-like 9 [Arabido	0.984	0.244	0.410	8e-19
296089037	335	unnamed protein product [Vitis vinifera]	0.984	0.373	0.434	1e-18
255646322	603	unknown [Glycine max]	0.984	0.207	0.403	1e-18

>gi|224118488|ref|XP_002317831.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222858504|gb|EEE96051.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/124 (43%), Positives = 74/124 (59%), Gaps = 3/124 (2%)

Query: 5   MGFRFQPSNEQIFCLLEKKRLNPHFSH-HTIKDIDDICSLEPWDLAGASKTESEDRVCYF 63
           +GFRF+PS+E++     + ++N        I++ID +C  EPWDL G S  E++D   +F
Sbjct: 13  LGFRFRPSDEELVNYYLRHKINGKDDKVRVIREID-VCKWEPWDLPGLSIIENKDPEWFF 71

Query: 64  FCKPYYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASKKAKIG 123
           FC    KY   +R +R TNAGYWK TG+  KIK+ N L G KK L F Y G A K  +  
Sbjct: 72  FCPLDRKYPNGSRQNRATNAGYWKATGKDRKIKSGNRLIGMKKTLVF-YTGRAPKGKRTN 130

Query: 124 WVMH 127
           WV+H
Sbjct: 131 WVVH 134

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798362|ref|XP_002867065.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297312901|gb|EFH43324.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 53/129 (41%), Positives = 76/129 (58%), Gaps = 4/129 (3%)

Query: 1   MESL-MGFRFQPSNEQIFCLLEKKRLNP-HFSHHTIKDIDDICSLEPWDLAGASKTESED 58
           MESL +GFRF+P++E++     + ++N  H     I DID +C  EPWDL   S  +++D
Sbjct: 6   MESLPLGFRFRPTDEELVNHYLRLKINGRHSDVRVIPDID-VCKWEPWDLPALSVIKTDD 64

Query: 59  RVCYFFCKPYYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASK 118
              +FFC    KY    R++R T++GYWK TG+   IK++  L G KK L F Y G A K
Sbjct: 65  PEWFFFCPRDRKYPNGHRSNRATDSGYWKATGKDRSIKSKKTLIGMKKTLVF-YRGRAPK 123

Query: 119 KAKIGWVMH 127
             +  W+MH
Sbjct: 124 GERTNWIMH 132

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453680|ref|XP_002268892.1| PREDICTED: uncharacterized protein LOC100252386 [Vitis vinifera]

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 56/129 (43%), Positives = 73/129 (56%), Gaps = 4/129 (3%)

Query: 2   ESL-MGFRFQPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICSLEPWDLAGASKTESEDRV 60
           ESL +GFRF P++E++     K ++    SH  I    D+C  EPWDL   S  ++ D  
Sbjct: 12  ESLPVGFRFHPTDEELVDHYLKLKILGMNSHVDIIPEVDVCKWEPWDLPVLSVIQTNDPE 71

Query: 61  CYFFCKPYYKYKKSTRAHRRTNAGYWKVTGRGSKIKTR--NGLSGTKKILTFKYHGPASK 118
            +FFC P YKY    R++R T AGYWK TG+   IK+R    L GTKK L F Y G A +
Sbjct: 72  WFFFCPPDYKYPTGRRSNRATEAGYWKPTGKDRNIKSRATKELLGTKKTLVF-YRGRAPQ 130

Query: 119 KAKIGWVMH 127
             +  WVMH
Sbjct: 131 SVRTNWVMH 139

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186516558|ref|NP_001119122.1| NAC transcription factor-like 9 [Arabidopsis thaliana] gi|3367576|emb|CAA20028.1| NAM / CUC2 -like protein [Arabidopsis thaliana] gi|7270509|emb|CAB80274.1| NAM / CUC2-like protein [Arabidopsis thaliana] gi|332661134|gb|AEE86534.1| NAC transcription factor-like 9 [Arabidopsis thaliana]

 Score = 99.0 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 53/129 (41%), Positives = 76/129 (58%), Gaps = 4/129 (3%)

Query: 1   MESL-MGFRFQPSNEQIFCLLEKKRLN-PHFSHHTIKDIDDICSLEPWDLAGASKTESED 58
           MESL +GFRF+P++E++     + ++N  H     I DID +C  EPWDL   S  +++D
Sbjct: 6   MESLPLGFRFRPTDEELVNHYLRLKINGRHSDVRVIPDID-VCKWEPWDLPALSVIKTDD 64

Query: 59  RVCYFFCKPYYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASK 118
              +FFC    KY    R++R T++GYWK TG+   IK++  L G KK L F Y G A K
Sbjct: 65  PEWFFFCPRDRKYPNGHRSNRATDSGYWKATGKDRSIKSKKTLIGMKKTLVF-YRGRAPK 123

Query: 119 KAKIGWVMH 127
             +  W+MH
Sbjct: 124 GERTNWIMH 132

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187196|ref|NP_001190927.1| NAC transcription factor-like 9 [Arabidopsis thaliana] gi|332661135|gb|AEE86535.1| NAC transcription factor-like 9 [Arabidopsis thaliana]

 Score = 99.0 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 53/129 (41%), Positives = 76/129 (58%), Gaps = 4/129 (3%)

Query: 1   MESL-MGFRFQPSNEQIFCLLEKKRLN-PHFSHHTIKDIDDICSLEPWDLAGASKTESED 58
           MESL +GFRF+P++E++     + ++N  H     I DID +C  EPWDL   S  +++D
Sbjct: 6   MESLPLGFRFRPTDEELVNHYLRLKINGRHSDVRVIPDID-VCKWEPWDLPALSVIKTDD 64

Query: 59  RVCYFFCKPYYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASK 118
              +FFC    KY    R++R T++GYWK TG+   IK++  L G KK L F Y G A K
Sbjct: 65  PEWFFFCPRDRKYPNGHRSNRATDSGYWKATGKDRSIKSKKTLIGMKKTLVF-YRGRAPK 123

Query: 119 KAKIGWVMH 127
             +  W+MH
Sbjct: 124 GERTNWIMH 132

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399031|gb|ADL36810.1| NAC domain class transcription factor [Malus x domestica]

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 54/136 (39%), Positives = 76/136 (55%), Gaps = 10/136 (7%)

Query: 1   MESL-MGFRFQPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICSLEPWDLAGASKTESEDR 59
           MESL +GFRF+P++E++     + ++N   S   +    D+C  EPWDL   S  +S+D+
Sbjct: 6   MESLPLGFRFRPTDEELINHYLRLKINGRDSEVRVIPEIDVCRWEPWDLPKLSVIKSDDQ 65

Query: 60  VCYFFCKPYYKYKKSTRAHRRTNAGYWKVTGRGSKIKTR--------NGLSGTKKILTFK 111
             +FFC    KY    R++R T+AGYWK TG+   IK+R        NG  G KK L F 
Sbjct: 66  EWFFFCPRDRKYPNGHRSNRATDAGYWKATGKDRTIKSRQCKSASNSNGQVGMKKTLVF- 124

Query: 112 YHGPASKKAKIGWVMH 127
           Y G A K  +  W+MH
Sbjct: 125 YRGRAPKGERTSWIMH 140

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061527|ref|XP_002300524.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222847782|gb|EEE85329.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 52/133 (39%), Positives = 75/133 (56%), Gaps = 7/133 (5%)

Query: 1   MESL-MGFRFQPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICSLEPWDLAGASKTESEDR 59
           M+SL +GFRF+P++E++     + ++N   S   +    D+C  EPWDL G S  +++D 
Sbjct: 5   MDSLPLGFRFRPTDEELISHYLRLKINGRDSEVEVIPEIDVCKWEPWDLPGQSVIKTDDP 64

Query: 60  VCYFFCKPYYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNG-----LSGTKKILTFKYHG 114
             +FFC    KY    R++R T+AGYWK TG+   IK+R       L G KK L F Y G
Sbjct: 65  EWFFFCPRDRKYPNGHRSNRATDAGYWKATGKDRTIKSRKSAGNTTLIGMKKTLVF-YRG 123

Query: 115 PASKKAKIGWVMH 127
            A K  +  W+MH
Sbjct: 124 RAPKGKRTNWIMH 136

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567421|ref|NP_567986.3| NAC transcription factor-like 9 [Arabidopsis thaliana] gi|332661133|gb|AEE86533.1| NAC transcription factor-like 9 [Arabidopsis thaliana]

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 53/129 (41%), Positives = 76/129 (58%), Gaps = 4/129 (3%)

Query: 1   MESL-MGFRFQPSNEQIFCLLEKKRLN-PHFSHHTIKDIDDICSLEPWDLAGASKTESED 58
           MESL +GFRF+P++E++     + ++N  H     I DID +C  EPWDL   S  +++D
Sbjct: 6   MESLPLGFRFRPTDEELVNHYLRLKINGRHSDVRVIPDID-VCKWEPWDLPALSVIKTDD 64

Query: 59  RVCYFFCKPYYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASK 118
              +FFC    KY    R++R T++GYWK TG+   IK++  L G KK L F Y G A K
Sbjct: 65  PEWFFFCPRDRKYPNGHRSNRATDSGYWKATGKDRSIKSKKTLIGMKKTLVF-YRGRAPK 123

Query: 119 KAKIGWVMH 127
             +  W+MH
Sbjct: 124 GERTNWIMH 132

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089037|emb|CBI38740.3| unnamed protein product [Vitis vinifera]

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/129 (43%), Positives = 73/129 (56%), Gaps = 4/129 (3%)

Query: 2   ESL-MGFRFQPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICSLEPWDLAGASKTESEDRV 60
           ESL +GFRF P++E++     K ++    SH  I    D+C  EPWDL   S  ++ D  
Sbjct: 4   ESLPVGFRFHPTDEELVDHYLKLKILGMNSHVDIIPEVDVCKWEPWDLPVLSVIQTNDPE 63

Query: 61  CYFFCKPYYKYKKSTRAHRRTNAGYWKVTGRGSKIKTR--NGLSGTKKILTFKYHGPASK 118
            +FFC P YKY    R++R T AGYWK TG+   IK+R    L GTKK L F Y G A +
Sbjct: 64  WFFFCPPDYKYPTGRRSNRATEAGYWKPTGKDRNIKSRATKELLGTKKTLVF-YRGRAPQ 122

Query: 119 KAKIGWVMH 127
             +  WVMH
Sbjct: 123 SVRTNWVMH 131

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646322|gb|ACU23644.1| unknown [Glycine max]

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/129 (40%), Positives = 77/129 (59%), Gaps = 4/129 (3%)

Query: 1   MESL-MGFRFQPSNEQIFCLLEKKRLNPHFSH-HTIKDIDDICSLEPWDLAGASKTESED 58
           ++SL +GFRF+P++E++     ++++N +      I++ID +C  EPWD+ G S  +++D
Sbjct: 19  LDSLPLGFRFRPTDEELVNYYLRQKINGNGREVWVIREID-VCKWEPWDMPGLSVVQTKD 77

Query: 59  RVCYFFCKPYYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASK 118
              +FFC    KY    R +R TN GYWK TG+  KIK+   L G KK L F Y G A K
Sbjct: 78  PEWFFFCPQDRKYPNGHRLNRATNNGYWKATGKDRKIKSGTILIGMKKTLVF-YTGRAPK 136

Query: 119 KAKIGWVMH 127
             +  WVMH
Sbjct: 137 GNRTNWVMH 145

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
TAIR|locus:2128013	534	NTL9 "NAC transcription factor	0.984	0.234	0.372	1.9e-16
TAIR|locus:2037920	652	NAC014 "NAC 014" [Arabidopsis	0.984	0.191	0.341	4.2e-15
TAIR|locus:2167155	476	NAC086 "NAC domain containing	0.944	0.252	0.341	6.1e-15
TAIR|locus:2097720	479	NAC045 "NAC domain containing	0.944	0.250	0.341	6.2e-15
TAIR|locus:2009729	631	NAC028 "NAC domain containing	0.944	0.190	0.349	1.8e-14
TAIR|locus:2153899	451	TIP "TCV-interacting protein"	0.952	0.268	0.352	2.4e-14
TAIR|locus:2164895	285	NAC6 "NAC domain containing pr	0.929	0.414	0.365	3.2e-14
TAIR|locus:2114678	469	NAC062 "NAC domain containing	0.984	0.266	0.330	4.4e-14
TAIR|locus:2172334	335	ANAC087 "Arabidopsis NAC domai	0.929	0.352	0.370	4.6e-14
TAIR|locus:2202028	395	NAC007 "NAC 007" [Arabidopsis	0.944	0.303	0.370	4.8e-14

TAIR|locus:2128013 NTL9 "NAC transcription factor-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 1.9e-16, P = 1.9e-16
 Identities = 48/129 (37%), Positives = 70/129 (54%)

Query:     1 MESL-MGFRFQPSNEQIFCLLEKKRLNP-HFSHHTIKDIDDICSLEPWDLAGASKTESED 58
             MESL +GFRF+P++E++     + ++N  H     I DID +C  EPWDL   S  +++D
Sbjct:     6 MESLPLGFRFRPTDEELVNHYLRLKINGRHSDVRVIPDID-VCKWEPWDLPALSVIKTDD 64

Query:    59 RVXXXXXXXXXXXXXSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASK 118
                              R++R T++GYWK TG+   IK++  L G KK L F Y G A K
Sbjct:    65 PEWFFFCPRDRKYPNGHRSNRATDSGYWKATGKDRSIKSKKTLIGMKKTLVF-YRGRAPK 123

Query:   119 KAKIGWVMH 127
               +  W+MH
Sbjct:   124 GERTNWIMH 132

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0031347 "regulation of defense response" evidence=IMP

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

TAIR|locus:2037920 NAC014 "NAC 014" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 44/129 (34%), Positives = 70/129 (54%)

Query:     1 MESL-MGFRFQPSNEQIFCLLEKKRLNPH-FSHHTIKDIDDICSLEPWDLAGASKTESED 58
             ME+L +GFRF+P++E++     + ++N        I +ID +C  EPWDL G S  +++D
Sbjct:    21 MEALPLGFRFRPTDEELINHYLRLKINGRDLEVRVIPEID-VCKWEPWDLPGLSVIKTDD 79

Query:    59 RVXXXXXXXXXXXXXSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASK 118
             +                R++R T+ GYWK TG+   IK++  + G KK L F Y G A +
Sbjct:    80 QEWFFFCPRDRKYPSGHRSNRATDIGYWKATGKDRTIKSKKMIIGMKKTLVF-YRGRAPR 138

Query:   119 KAKIGWVMH 127
               +  W+MH
Sbjct:   139 GERTNWIMH 147

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2167155 NAC086 "NAC domain containing protein 86" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 6.1e-15, P = 6.1e-15
 Identities = 42/123 (34%), Positives = 62/123 (50%)

Query:     6 GFRFQPSNEQIFCLLEKKRLN-PHFSHHTIKDIDDICSLEPWDLAGASKTESEDRVXXXX 64
             GFRF P++E++     K+++N        I ++D +   EPWDL G S   S+D+     
Sbjct:     9 GFRFHPTDEELITYYLKRKINGQEIELEIIPEVD-LYKCEPWDLPGKSLIPSKDQEWFFF 67

Query:    65 XXXXXXXXXSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASKKAKIGW 124
                       +R +R T  GYWK TG+  ++  R+   GTKK L + Y G A    + GW
Sbjct:    68 SPRDRKYPNGSRTNRATKGGYWKATGKDRRVSWRDRAIGTKKTLVY-YRGRAPHGIRTGW 126

Query:   125 VMH 127
             VMH
Sbjct:   127 VMH 129

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2097720 NAC045 "NAC domain containing protein 45" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 6.2e-15, P = 6.2e-15
 Identities = 42/123 (34%), Positives = 62/123 (50%)

Query:     6 GFRFQPSNEQIFCLLEKKRLNP-HFSHHTIKDIDDICSLEPWDLAGASKTESEDRVXXXX 64
             GFRF P++E++     K+++N        I ++D +   EPWDL G S   S+D+     
Sbjct:     9 GFRFHPTDEELITYYLKRKINGLEIELEVIAEVD-LYKCEPWDLPGKSLLPSKDQEWYFF 67

Query:    65 XXXXXXXXXSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASKKAKIGW 124
                       +R +R T  GYWK TG+  ++  R+   GTKK L + Y G A    + GW
Sbjct:    68 SPRDRKYPNGSRTNRATKGGYWKATGKDRRVSWRDRAIGTKKTLVY-YRGRAPHGIRTGW 126

Query:   125 VMH 127
             VMH
Sbjct:   127 VMH 129

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2009729 NAC028 "NAC domain containing protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 43/123 (34%), Positives = 63/123 (51%)

Query:     6 GFRFQPSNEQIFCLLEKKRLNPH-FSHHTIKDIDDICSLEPWDLAGASKTESEDRVXXXX 64
             GFRF P++E++     K+++N        I +ID +   EPWDL G S   S+D      
Sbjct:     9 GFRFHPTDEELVIYYLKRKINGRTIELEIIPEID-LYKCEPWDLPGKSLLPSKDLEWFFF 67

Query:    65 XXXXXXXXXSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASKKAKIGW 124
                       +R +R T AGYWK TG+  K+ + + + GTKK L + Y G A   ++  W
Sbjct:    68 SPRDRKYPNGSRTNRATKAGYWKATGKDRKVTSHSRMVGTKKTLVY-YRGRAPHGSRTDW 126

Query:   125 VMH 127
             VMH
Sbjct:   127 VMH 129

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2153899 TIP "TCV-interacting protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 2.4e-14, P = 2.4e-14
 Identities = 44/125 (35%), Positives = 66/125 (52%)

Query:     5 MGFRFQPSNEQIFCLLEKKRLNPHFSH-HTIKDIDDICSLEPWDLAGASKTESEDRVXXX 63
             +GFRF P++E++     + ++N H +    I++ID IC  EPWDL   S  ++ D     
Sbjct:    15 VGFRFSPTDEELVRYYLRLKINGHDNDVRVIREID-ICKWEPWDLPDFSVVKTTDSEWLF 73

Query:    64 XXXXXXXXXXSTRAHRRTNAGYWKVTGRGSKIKT-RNGLSGTKKILTFKYHGPASKKAKI 122
                        +R +R T AGYWK TG+  KIK+ +  + G K+ L F Y G A K  + 
Sbjct:    74 FCPLDRKYPSGSRMNRATVAGYWKATGKDRKIKSGKTKIIGVKRTLVF-YTGRAPKGTRT 132

Query:   123 GWVMH 127
              W+MH
Sbjct:   133 CWIMH 137

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0051607 "defense response to virus" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2164895 NAC6 "NAC domain containing protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.2e-14, P = 3.2e-14
 Identities = 45/123 (36%), Positives = 60/123 (48%)

Query:     6 GFRFQPSNEQIFC-LLEKKRLNPHFSHHTIKDIDDICSLEPWDLAGASKTESEDRVXXXX 64
             GFRF P++E++    L+ K  N  FS   I ++D +  +EPWDL   +K   ++      
Sbjct:    23 GFRFHPTDEELITHYLKPKVFNTFFSATAIGEVD-LNKIEPWDLPWKAKMGEKE--WYFF 79

Query:    65 XXXXXXXXXSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASKKAKIGW 124
                        R +R T AGYWK TG+  +I     L G KK L F Y G A K  K  W
Sbjct:    80 CVRDRKYPTGLRTNRATEAGYWKATGKDKEIFKGKSLVGMKKTLVF-YKGRAPKGVKTNW 138

Query:   125 VMH 127
             VMH
Sbjct:   139 VMH 141

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IPI

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0010150 "leaf senescence" evidence=IEP;IMP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0010468 "regulation of gene expression" evidence=IMP

GO:0000303 "response to superoxide" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2114678 NAC062 "NAC domain containing protein 62" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 4.4e-14, P = 4.4e-14
 Identities = 43/130 (33%), Positives = 71/130 (54%)

Query:     1 MESL-MGFRFQPSNEQIFCLLEKKRLNPHFSH-HTIKDIDDICSLEPWDLAGASKTESED 58
             M+SL +G RF+P++E++     ++++N H      I++ID IC  EPWDL   S  +++D
Sbjct:    10 MDSLPVGLRFRPTDEELIRYYLRRKINGHDDDVKAIREID-ICKWEPWDLPDFSVIKTKD 68

Query:    59 RVXXXXXXXXXXXXXSTRAHRRTNAGYWKVTGRGSKIKT-RNGLSGTKKILTFKYHGPAS 117
                             +R +R T AGYWK TG+  KIK+ +  + G K+ L F + G A 
Sbjct:    69 SEWLYFCPLDRKYPSGSRQNRATVAGYWKATGKDRKIKSGKTNIIGVKRTLVF-HAGRAP 127

Query:   118 KKAKIGWVMH 127
             +  +  W++H
Sbjct:   128 RGTRTNWIIH 137

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0070417 "cellular response to cold" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2172334 ANAC087 "Arabidopsis NAC domain containing protein 87" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 4.6e-14, P = 4.6e-14
 Identities = 46/124 (37%), Positives = 63/124 (50%)

Query:     6 GFRFQPSNEQIF-CLLEKKRLNPHFSHHTIKDIDDICSLEPWDLAGASKTESEDRVXXXX 64
             GFRF P++E+I  C L++K LN  F+   + + D +   EPWDL   +K   ++      
Sbjct:    24 GFRFHPTDEEIITCYLKEKVLNSRFTAVAMGEAD-LNKCEPWDLPKRAKMGEKE--FYFF 80

Query:    65 XXXXXXXXXSTRAHRRTNAGYWKVTGRGSKI-KTRNGLSGTKKILTFKYHGPASKKAKIG 123
                        R +R T +GYWK TG+  +I K +  L G KK L F Y G A K  K  
Sbjct:    81 CQRDRKYPTGMRTNRATESGYWKATGKDKEIFKGKGCLVGMKKTLVF-YRGRAPKGEKTN 139

Query:   124 WVMH 127
             WVMH
Sbjct:   140 WVMH 143

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2202028 NAC007 "NAC 007" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 4.8e-14, P = 4.8e-14
 Identities = 46/124 (37%), Positives = 60/124 (48%)

Query:     6 GFRFQPSNEQIF-CLLEKKRLNPHFSHHTIKDIDDICSLEPWDLAGASKTESEDRVXXXX 64
             GFRF P++E++    L KK  +       IKDID +  +EPWDL    K   E++     
Sbjct:    10 GFRFHPTDEELVDYYLRKKVASKRIEIDFIKDID-LYKIEPWDLQELCKIGHEEQSDWYF 68

Query:    65 XXXXXXXX-XSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASKKAKIG 123
                        TR +R T AG+WK TGR   I  R+ L G +K L F Y G A    K  
Sbjct:    69 FSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRHSLIGMRKTLVF-YKGRAPNGQKSD 127

Query:   124 WVMH 127
             W+MH
Sbjct:   128 WIMH 131

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.7__521__AT4G35580.1 annotation not avaliable (507 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	127
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	2e-31

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  107 bits (270), Expect = 2e-31
 Identities = 49/125 (39%), Positives = 66/125 (52%), Gaps = 6/125 (4%)

Query: 6   GFRFQPSNEQ-IFCLLEKK-RLNPHFSHHTIKDIDDICSLEPWDLAGASKTESEDRVCYF 63
           GFRF P++E+ +   L++K    P      I ++D I   EPWDL    K +  DR  YF
Sbjct: 4   GFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVD-IYKFEPWDLPD-GKAKGGDREWYF 61

Query: 64  FCKPYYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNG-LSGTKKILTFKYHGPASKKAKI 122
           F     KY   +R +R T +GYWK TG+   + ++ G + G KK L F Y G A K  K 
Sbjct: 62  FSPRDRKYPNGSRTNRATGSGYWKATGKDKPVLSKGGEVVGMKKTLVF-YKGRAPKGEKT 120

Query: 123 GWVMH 127
            WVMH
Sbjct: 121 DWVMH 125

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	127
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=2.3e-46  Score=261.11  Aligned_cols=121  Identities=36%  Similarity=0.666  Sum_probs=91.5

Q ss_pred             CCCCceEcCCHHHHHHHHHHHhcCCCCC--ccceeecCCcCCCCCccccccCccCCCCceEEEEeccccccCCCCccccc
Q 038778            3 SLMGFRFQPSNEQIFCLLEKKRLNPHFS--HHTIKDIDDICSLEPWDLAGASKTESEDRVCYFFCKPYYKYKKSTRAHRR   80 (127)
Q Consensus         3 lppG~rF~PtDeELi~~yL~~k~~g~~~--~~~I~~~~dvy~~~P~~L~~~~~~~~~~~~wyFF~~~~~~~~~g~r~~r~   80 (127)
                      |||||||+|||+|||.+||++|+.|+++  .++|+++ |||+.|||+|+...  ..++++||||+++++++.++.|.+|+
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~-Diy~~~P~~L~~~~--~~~~~~~yFF~~~~~~~~~~~r~~R~   77 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDV-DIYSAHPWELPAKF--KGGDEEWYFFSPRKKKYPNGGRPNRV   77 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE---GGGS-GGGCHHHS--SS-SSEEEEEEE----------S-EE
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeec-ccCccChHHhhhhc--cCCCceEEEEEecccccCCccccccc
Confidence            8999999999999999999999999998  4899999 99999999999532  23577999999999999999999999


Q ss_pred             CCCceeEeeCCCeeeee-CCeeEEEEEEEEeeeeCCCCCCCCcCceeC
Q 038778           81 TNAGYWKVTGRGSKIKT-RNGLSGTKKILTFKYHGPASKKAKIGWVMH  127 (127)
Q Consensus        81 ~~~G~Wk~~g~~~~i~~-~g~~iG~k~~l~f~y~g~~~~~~kt~W~Mh  127 (127)
                      +++|+||++|+.++|.+ ++.+||+|++|+| |.++.+++.+|+|+||
T Consensus        78 ~~~G~Wk~~g~~~~i~~~~g~~iG~k~~l~f-~~~~~~~~~kt~W~M~  124 (129)
T PF02365_consen   78 TGGGYWKSTGKEKPIKDPGGKVIGFKKTLVF-YSGKSPNGKKTGWVMH  124 (129)
T ss_dssp             ETTEEEEEECEEEEEEE-TTCEEEEEEEEEE-EESSTTS-EEEEEEEE
T ss_pred             ccceEEeecccccccccccceeeeeEEEEEE-EeccCCCCCcCCeEEE
Confidence            99999999999999998 9999999999999 9988888999999998

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	127
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		4e-09
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		4e-09
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		2e-07

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 5/123 (4%)
Query: 6   GFRFQPSNEQIFC-LLEKKRLNPHFSHHTIKDIDDICSLEPWDLAGASKTESEDRVXXXX 64
           GFRF P++E++    L +K     FS   I +ID +   +PW L   +K    ++     
Sbjct: 23  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEID-LYKFDPWVLP--NKALFGEKEWYFF 79
Query: 65  XXXXXXXXXSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASKKAKIGW 124
                     +R +R   +GYWK TG    I T     G KK L F Y G A K  K  W
Sbjct: 80  SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVF-YIGKAPKGTKTNW 138
Query: 125 VMH 127
           +MH
Sbjct: 139 IMH 141

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 5/123 (4%)
Query: 6   GFRFQPSNEQIFC-LLEKKRLNPHFSHHTIKDIDDICSLEPWDLAGASKTESEDRVXXXX 64
           GFRF P++E++    L +K     FS   I +ID +   +PW L   +K    ++     
Sbjct: 20  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEID-LYKFDPWVLP--NKALFGEKEWYFF 76
Query: 65  XXXXXXXXXSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASKKAKIGW 124
                     +R +R   +GYWK TG    I T     G KK L F Y G A K  K  W
Sbjct: 77  SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVF-YIGKAPKGTKTNW 135
Query: 125 VMH 127
           +MH
Sbjct: 136 IMH 138

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 5/123 (4%)
Query: 6   GFRFQPSNEQIFC-LLEKKRLNPHFSHHTIKDIDDICSLEPWDLAGASKTESEDRVXXXX 64
           GFRF P+++++    L +K          I ++D +   +PWDL    +     R     
Sbjct: 18  GFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVD-LYKFDPWDLP--ERALFGAREWYFF 74
Query: 65  XXXXXXXXXSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASKKAKIGW 124
                     +R +R    GYWK TG    +  R    G KK L F Y G A +  K  W
Sbjct: 75  TPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVF-YAGKAPRGVKTDW 133
Query: 125 VMH 127
           +MH
Sbjct: 134 IMH 136

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	127
1ut7_A	171	No apical meristem protein; transcription regulati	5e-33
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	9e-33

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  112 bits (283), Expect = 5e-33
 Identities = 44/123 (35%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 6   GFRFQPSNEQ-IFCLLEKKRLNPHFSHHTIKDIDDICSLEPWDLAGASKTESEDRVCYFF 64
           GFRF P++E+ +   L +K     FS   I +ID +   +PW L   +     ++  YFF
Sbjct: 20  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEID-LYKFDPWVLPNKAL--FGEKEWYFF 76

Query: 65  CKPYYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASKKAKIGW 124
                KY   +R +R   +GYWK TG    I T     G KK L F Y G A K  K  W
Sbjct: 77  SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVF-YIGKAPKGTKTNW 135

Query: 125 VMH 127
           +MH
Sbjct: 136 IMH 138

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  112 bits (281), Expect = 9e-33
 Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 5/123 (4%)

Query: 6   GFRFQPSNEQ-IFCLLEKKRLNPHFSHHTIKDIDDICSLEPWDLAGASKTESEDRVCYFF 64
           GFRF P++++ +   L +K          I ++D +   +PWDL   +   + +   YFF
Sbjct: 18  GFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVD-LYKFDPWDLPERALFGAREW--YFF 74

Query: 65  CKPYYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASKKAKIGW 124
                KY   +R +R    GYWK TG    +  R    G KK L F Y G A +  K  W
Sbjct: 75  TPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVF-YAGKAPRGVKTDW 133

Query: 125 VMH 127
           +MH
Sbjct: 134 IMH 136

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	127
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=7.6e-52  Score=301.10  Aligned_cols=123  Identities=31%  Similarity=0.615  Sum_probs=112.0

Q ss_pred             CCCCCCceEcCCHHHHHHHHHHHhcCCCCC-ccceeecCCcCCCCCccccccCccCCCCceEEEEeccccccCCCCcccc
Q 038778            1 MESLMGFRFQPSNEQIFCLLEKKRLNPHFS-HHTIKDIDDICSLEPWDLAGASKTESEDRVCYFFCKPYYKYKKSTRAHR   79 (127)
Q Consensus         1 m~lppG~rF~PtDeELi~~yL~~k~~g~~~-~~~I~~~~dvy~~~P~~L~~~~~~~~~~~~wyFF~~~~~~~~~g~r~~r   79 (127)
                      +.|||||||+|||||||.|||++|+.|.++ .++|+++ |||.+|||+||+...  .++++|||||++.+|+++|.|.+|
T Consensus        13 ~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~ev-Dvy~~~Pw~Lp~~~~--~g~~ewYFFs~r~~ky~~g~R~nR   89 (174)
T 3ulx_A           13 LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEV-DLYKFDPWDLPERAL--FGAREWYFFTPRDRKYPNGSRPNR   89 (174)
T ss_dssp             TTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEEC-CGGGSCGGGSGGGCS--SCSSEEEEEEECCC-----CCSCE
T ss_pred             cCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeec-ccccCCchhhhhhhc--cCCceEEEEeccccccCCCCCcee
Confidence            479999999999999999999999999999 8899999 999999999999764  357899999999999999999999


Q ss_pred             cCCCceeEeeCCCeeeeeCCeeEEEEEEEEeeeeCCCCCCCCcCceeC
Q 038778           80 RTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASKKAKIGWVMH  127 (127)
Q Consensus        80 ~~~~G~Wk~~g~~~~i~~~g~~iG~k~~l~f~y~g~~~~~~kt~W~Mh  127 (127)
                      ++++|+||++|++++|.++|.+||+|++|+| |.|+++++.+|+|+||
T Consensus        90 ~t~~G~WkatG~dk~I~~~g~~vG~KktLvF-y~g~~p~g~kT~WvMh  136 (174)
T 3ulx_A           90 AAGNGYWKATGADKPVAPRGRTLGIKKALVF-YAGKAPRGVKTDWIMH  136 (174)
T ss_dssp             EETTEEEEECSCCEEECCSSSCCEEEEEEEE-EESSTTSCEEEEEEEE
T ss_pred             ecCCceEccCCCCcEEeeCCcEEEEEEEEEE-ecCCCCCCCcCCeEEE
Confidence            9999999999999999888899999999999 9999999999999998

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=2.2e-51  Score=298.22  Aligned_cols=123  Identities=33%  Similarity=0.596  Sum_probs=110.3

Q ss_pred             CCCCCCceEcCCHHHHHHHHHHHhcCCCCC-ccceeecCCcCCCCCccccccCccCCCCceEEEEeccccccCCCCcccc
Q 038778            1 MESLMGFRFQPSNEQIFCLLEKKRLNPHFS-HHTIKDIDDICSLEPWDLAGASKTESEDRVCYFFCKPYYKYKKSTRAHR   79 (127)
Q Consensus         1 m~lppG~rF~PtDeELi~~yL~~k~~g~~~-~~~I~~~~dvy~~~P~~L~~~~~~~~~~~~wyFF~~~~~~~~~g~r~~r   79 (127)
                      +.|||||||+|||||||.|||++|+.|.++ .++|+++ |||.+|||+||+...  .++++|||||++.+++++|.|.+|
T Consensus        15 ~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~-Diy~~~Pw~Lp~~~~--~g~~ewyFFs~r~~k~~~g~R~~R   91 (171)
T 1ut7_A           15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKAL--FGEKEWYFFSPRDRKYPNGSRPNR   91 (171)
T ss_dssp             SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEEC-CGGGSCGGGHHHHSS--SCSSEEEEEEECCC-------CCE
T ss_pred             cCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeec-ccccCChhHhhchhh--cCCccEEEEeccccccCCCCcccc
Confidence            479999999999999999999999999999 8899999 999999999999763  467899999999999999999999


Q ss_pred             cCCCceeEeeCCCeeeeeCCeeEEEEEEEEeeeeCCCCCCCCcCceeC
Q 038778           80 RTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASKKAKIGWVMH  127 (127)
Q Consensus        80 ~~~~G~Wk~~g~~~~i~~~g~~iG~k~~l~f~y~g~~~~~~kt~W~Mh  127 (127)
                      ++++|+||++|++++|.+++.+||+|++|+| |.|+++++.+|+|+||
T Consensus        92 ~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvF-y~g~~p~g~kT~WvMh  138 (171)
T 1ut7_A           92 VAGSGYWKATGTDKIISTEGQRVGIKKALVF-YIGKAPKGTKTNWIMH  138 (171)
T ss_dssp             EETTEEEEEEEEEEEEEETTEEEEEEEEEEE-EESSTTSCEEEEEEEE
T ss_pred             cCCCCEEeccCCCceEEecCcEEEEEEEEEE-EcCcCCCCCcCCeEEE
Confidence            9999999999999999988899999999999 9999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	127
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	5e-25

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 91.2 bits (226), Expect = 5e-25
 Identities = 44/123 (35%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 6   GFRFQPSNEQIFC-LLEKKRLNPHFSHHTIKDIDDICSLEPWDLAGASKTESEDRVCYFF 64
           GFRF P++E++    L +K     FS   I +I D+   +PW L   +    ++   YFF
Sbjct: 20  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKALFGEKE--WYFF 76

Query: 65  CKPYYKYKKSTRAHRRTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASKKAKIGW 124
                KY   +R +R   +GYWK TG    I T     G KK L F Y G A K  K  W
Sbjct: 77  SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVF-YIGKAPKGTKTNW 135

Query: 125 VMH 127
           +MH
Sbjct: 136 IMH 138

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	127
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=7.1e-50  Score=287.38  Aligned_cols=123  Identities=33%  Similarity=0.596  Sum_probs=110.0

Q ss_pred             CCCCCCceEcCCHHHHHHHHHHHhcCCCCC-ccceeecCCcCCCCCccccccCccCCCCceEEEEeccccccCCCCcccc
Q 038778            1 MESLMGFRFQPSNEQIFCLLEKKRLNPHFS-HHTIKDIDDICSLEPWDLAGASKTESEDRVCYFFCKPYYKYKKSTRAHR   79 (127)
Q Consensus         1 m~lppG~rF~PtDeELi~~yL~~k~~g~~~-~~~I~~~~dvy~~~P~~L~~~~~~~~~~~~wyFF~~~~~~~~~g~r~~r   79 (127)
                      |+|||||||+|||||||.|||++|+.|.++ .++|+++ |||++|||+||+...  .++++|||||++++++++|.|.+|
T Consensus        15 l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~-Dvy~~~Pw~Lp~~~~--~~~~~wyFft~~~~k~~~g~r~~R   91 (166)
T d1ut7a_          15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKAL--FGEKEWYFFSPRDRKYPNGSRPNR   91 (166)
T ss_dssp             SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEEC-CGGGSCGGGHHHHSS--SCSSEEEEEEECCC-------CCE
T ss_pred             ccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceec-cCCcCChhhccchhc--cCcceEEEEeeeccccCCCCcccc
Confidence            689999999999999999999999999999 8899999 999999999998753  457899999999999999999999


Q ss_pred             cCCCceeEeeCCCeeeeeCCeeEEEEEEEEeeeeCCCCCCCCcCceeC
Q 038778           80 RTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASKKAKIGWVMH  127 (127)
Q Consensus        80 ~~~~G~Wk~~g~~~~i~~~g~~iG~k~~l~f~y~g~~~~~~kt~W~Mh  127 (127)
                      ++++|+||++|+++.|.++|.+||+|++|+| |.++++++.+|+|+||
T Consensus        92 ~~g~G~Wk~~g~~~~i~~~g~~vG~kk~l~f-y~~~~~~~~~t~W~M~  138 (166)
T d1ut7a_          92 VAGSGYWKATGTDKIISTEGQRVGIKKALVF-YIGKAPKGTKTNWIMH  138 (166)
T ss_dssp             EETTEEEEEEEEEEEEEETTEEEEEEEEEEE-EESSTTSCEEEEEEEE
T ss_pred             ccCCCEecccCCCceEecCCcEEEEEEEEEE-EecCCCCCCccCeEEE
Confidence            9999999999999999889999999999999 9999999999999998