Citrus Sinensis ID: 038823

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
Protein Sequence
IEHRVFLINQFAVRPQPQMGSILTKFKDRTDKRTLMVRNGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP
Secondary Structure (PSIPRED)
cccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccEEEEcHHHHHHHHcccccccccccccccEEEEEEEcccEEEEEEEcccccccHHHHHHHHHHHHHHccccccccEEcEEccccEEEEEEEEcccccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHHccccccccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccccccccHHHHccccccHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEEEccccccccccccccccccccccccccccccccEcccccccccccccEEcHHHHHHHHccccHHcccccccccEEEEcEcccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHEEEEcccccEEEEEEEcccccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEcccHcHEEccccccccHcHcccEEEccccccEEEEEEEEEEcccccHHHHHcccEcccccHHHHHEEEEEEHccccccccccccccHHHHHHHHHHHHHcccHHHHccHHHcccccccccHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
IEHRVFLINqfavrpqpqmgsiltkfkdrtdkrtLMVRNGARVLKELIAsshgkynpyrifSAKELEIATnnyderkfikqdsTYKLYKGFWQERLISVMKYnesysdsackfsINNIVYAAQMDHKHILKLIGccletpipilvfeygeyttlrdrifgapqphfepllLKHRLKVAMGIAHALAYLhvgfprpivFGNLISLCILFNeenvaklfdfsesisipegethiitrsrfgawtysapeykrggvfnekldVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLqnnrfteiadpiivqdlscteTEHQFQACARLTleclnesp
Flexible Loop (DISEMBL)
iehrvflinqfavrpqpqmgsiltkfkdrtdkrtlMVRNGARVLKEliasshgkynpyRIFSAKELEIATnnyderkfikqdstYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP
Low Complexity Region (SEG)
IEHRVFLINQFAVRPQPQMGSILTKFKDRTDKRTLMVRNGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP
Disordered region (IsUnstruct)
****VFLINQFAVRPQPQMGSILTKFKDRTDKRTLMVRNGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECL****
Disordered Region (DISOPRED)
*EHRVFLINQFAVRPQPQMGS**************************************IFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESY**SACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTR*******S**HLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLN***
Disordered Region (DISEMBL)
IEHRVFLINQFAVRPQPQMGSILTKFKDRTDKRTLMVRNGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP
Disordered Region (DISPRO)
IEHRVFLINQFAVRP***************************************YNPYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNES*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
IEHRVFLINQFAVRPQPQMGSILTKFKDRTDKRTLMVRNGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	338	2.2.26 [Sep-21-2011]
Q7X8C5	748	Wall-associated receptor	no	no	0.863	0.390	0.343	1e-40
Q9SA25	720	Wall-associated receptor	no	no	0.896	0.420	0.334	4e-40
Q9LMN6	738	Wall-associated receptor	no	no	0.881	0.403	0.321	9e-40
Q9LSV3	433	Putative wall-associated	no	no	0.926	0.722	0.310	2e-39
Q9LMN7	733	Wall-associated receptor	no	no	0.849	0.391	0.323	5e-39
Q9LMT9	764	Putative wall-associated	no	no	0.905	0.400	0.332	7e-39
Q9LMP1	732	Wall-associated receptor	no	no	0.852	0.393	0.320	1e-38
Q9LMN8	741	Wall-associated receptor	no	no	0.869	0.396	0.314	2e-38
Q9S9M2	761	Wall-associated receptor	no	no	0.863	0.383	0.326	3e-38
Q39191	735	Wall-associated receptor	no	no	0.887	0.408	0.314	2e-37

>sp|Q7X8C5|WAKLB_ARATH Wall-associated receptor kinase-like 2 OS=Arabidopsis thaliana GN=WAKL2 PE=2 SV=1

 Score =  167 bits (422), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/306 (34%), Positives = 163/306 (53%), Gaps = 14/306 (4%)

Query: 33  RTLMVRNGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFW 92
           R    RNG  +LK+ +A   G     RIFS+ ELE AT+N+++ + + Q     +YKG  
Sbjct: 376 RKFFRRNGGMLLKQQLARKEGNVEMSRIFSSHELEKATDNFNKNRVLGQGGQGTVYKGML 435

Query: 93  QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYT 152
            +  I  +K +++  +   +  IN +V  AQ++H++I+KL+GCCLET +P+LV+E+    
Sbjct: 436 VDGRIVAVKRSKAVDEDRVEEFINEVVVLAQINHRNIVKLLGCCLETEVPVLVYEFVPNG 495

Query: 153 TLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN 212
            L  R+      +   +  + RL +A+ IA AL+YLH     PI   ++ +  IL +E N
Sbjct: 496 DLCKRLHDESDDY--TMTWEVRLHIAIEIAGALSYLHSAASFPIYHRDIKTTNILLDERN 553

Query: 213 VAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            AK+ DF  S S+   +TH+ T+   G + Y  PEY +   F EK DVY+F  VL+ELLT
Sbjct: 554 RAKVSDFGTSRSVTIDQTHLTTQVA-GTFGYVDPEYFQSSKFTEKSDVYSFGVVLVELLT 612

Query: 273 GQSTRDLLRTH---GSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARL 329
           G+     +R+    G   H +E +K     NR  +I D  I  + +      Q  + A L
Sbjct: 613 GEKPSSRVRSEENRGLAAHFVEAVK----ENRVLDIVDDRIKDECN----MDQVMSVANL 664

Query: 330 TLECLN 335
              CLN
Sbjct: 665 ARRCLN 670

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: -

>sp|Q9SA25|WAKLG_ARATH Wall-associated receptor kinase-like 8 OS=Arabidopsis thaliana GN=WAKL8 PE=2 SV=1

 Score =  165 bits (418), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 104/311 (33%), Positives = 169/311 (54%), Gaps = 8/311 (2%)

Query: 25  KFKDRTDKRTLMVRNGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFIKQDST 84
           K K    KR    RNG  +L++  +  HG  N  ++FS+ +LE AT+ ++  + + Q   
Sbjct: 342 KRKVAKQKRKFFQRNGGLLLQQQTSFLHGSVNRTKVFSSNDLENATDRFNASRILGQGGQ 401

Query: 85  YKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL 144
             +YKG  ++ +I  +K +++  +   +  IN I+  +Q++H++++K++GCCLET +PIL
Sbjct: 402 GTVYKGMLEDGMIVAVKKSKALKEENLEEFINEIILLSQINHRNVVKILGCCLETEVPIL 461

Query: 145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISL 204
           V+E+     L D +   P   F P+  + RL +A  +A AL+YLH     PI   ++ S 
Sbjct: 462 VYEFIPNRNLFDHLHN-PSEDF-PMSWEVRLCIACEVADALSYLHSAVSIPIYHRDVKST 519

Query: 205 CILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFS 264
            IL +E++ AK+ DF  S S+   +TH+ T  + G   Y  PEY +   F  K DVY+F 
Sbjct: 520 NILLDEKHRAKVSDFGISRSVAIDDTHLTTIVQ-GTIGYVDPEYLQSNHFTGKSDVYSFG 578

Query: 265 TVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQ 324
            +L+ELLTG+    LLR    VR L  Y    ++N+R  EI D  I ++        +  
Sbjct: 579 VLLIELLTGEKPVSLLRRQ-EVRMLGAYFLEAMRNDRLHEILDARIKEECD----REEVL 633

Query: 325 ACARLTLECLN 335
           A A+L   CL+
Sbjct: 634 AVAKLARRCLS 644

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9LMN6|WAK4_ARATH Wall-associated receptor kinase 4 OS=Arabidopsis thaliana GN=WAK4 PE=2 SV=1

 Score =  164 bits (415), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 166/308 (53%), Gaps = 10/308 (3%)

Query: 27  KDRTDKRTLMVRNGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFIKQDSTYK 86
           KD   ++    +NG  +L + ++ +       +IF+ + ++ AT+ YDE + + Q     
Sbjct: 364 KDTELRQQFFEQNGGGMLMQRLSGAGPSNVDVKIFTEEGMKEATDGYDENRILGQGGQGT 423

Query: 87  LYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF 146
           +YKG   +  I  +K      +S  +  IN ++  +Q++H++++KL+GCCLET +P+LV+
Sbjct: 424 VYKGILPDNSIVAIKKARLGDNSQVEQFINEVLVLSQINHRNVVKLLGCCLETEVPLLVY 483

Query: 147 EYGEYTTLRDRIFGAPQPHFEP-LLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLC 205
           E+    TL D + G+    F+  L  +HRL++A+ IA  LAYLH     PI+  ++ +  
Sbjct: 484 EFISSGTLFDHLHGS---MFDSSLTWEHRLRMAVEIAGTLAYLHSSASIPIIHRDIKTAN 540

Query: 206 ILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFST 265
           IL +E   AK+ DF  S  IP  +  + T  + G   Y  PEY   G+ NEK DVY+F  
Sbjct: 541 ILLDENLTAKVADFGASRLIPMDKEDLATMVQ-GTLGYLDPEYYNTGLLNEKSDVYSFGV 599

Query: 266 VLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQA 325
           VL+ELL+GQ      R   S +H++ Y  +  + NR  EI D  ++ +      + + Q 
Sbjct: 600 VLMELLSGQKALCFERPQTS-KHIVSYFASATKENRLHEIIDGQVMNE----NNQREIQK 654

Query: 326 CARLTLEC 333
            AR+ +EC
Sbjct: 655 AARIAVEC 662

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9LSV3|WAKLS_ARATH Putative wall-associated receptor kinase-like 16 OS=Arabidopsis thaliana GN=WAKL16 PE=3 SV=1

 Score =  162 bits (411), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 171/322 (53%), Gaps = 9/322 (2%)

Query: 13  VRPQPQMGSILTKFKDRTDKRTLMV-RNGARVLKELIASSHGKYNPYRIFSAKELEIATN 71
           VR    + +I    KD   +R L   +NG  +L E ++ +      ++IF+ ++++ ATN
Sbjct: 47  VRSISYIKNIRKHQKDTKIQRQLFFEKNGGGMLIERLSGAGSSNIDFKIFTEEDMKEATN 106

Query: 72  NYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILK 131
            YD  + + Q   + +YKG   +  I  +K      ++  +  IN ++  +Q++H++++K
Sbjct: 107 GYDVSRILGQGGQWTVYKGILPDNSIVAIKKTRLGDNNQVEQFINEVLVLSQINHRNVVK 166

Query: 132 LIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVG 191
           L+GCCLET +P+LV+E+    +L D + G+       L  +HRL++A+ +A A+AYLH G
Sbjct: 167 LLGCCLETEVPLLVYEFITGGSLFDHLHGS--MFVSSLTWEHRLEIAIEVAGAIAYLHSG 224

Query: 192 FPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRG 251
              PI+  ++ +  IL +E   AK+ DF  S   P  +  + T  + G   Y  PEY   
Sbjct: 225 ASIPIIHRDIKTENILLDENLTAKVADFGASKLKPMDKEQLTTMVQ-GTLGYLDPEYYTT 283

Query: 252 GVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIV 311
            + NEK DVY+F  VL+EL++GQ      R   S +HL+ Y     + NR  EI D  ++
Sbjct: 284 WLLNEKSDVYSFGVVLMELISGQKALCFERPETS-KHLVSYFVLATKENRLHEIIDDQVL 342

Query: 312 QDLSCTETEHQFQACARLTLEC 333
            +    E + +    AR+ +EC
Sbjct: 343 NE----ENQREIHEAARVAVEC 360

Putative serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9LMN7|WAK5_ARATH Wall-associated receptor kinase 5 OS=Arabidopsis thaliana GN=WAK5 PE=2 SV=1

 Score =  162 bits (409), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 164/297 (55%), Gaps = 10/297 (3%)

Query: 38  RNGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQERLI 97
           +NG  +L + ++ +       +IF+ + ++ AT+ Y+E + + Q     +YKG  Q+  I
Sbjct: 373 QNGGGMLIQRLSGAGPSNVDVKIFTEEGMKEATDGYNESRILGQGGQGTVYKGILQDNSI 432

Query: 98  SVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDR 157
             +K       S  +  IN ++  +Q++H++++KL+GCCLET +P+LV+E+    TL D 
Sbjct: 433 VAIKKARLGDRSQVEQFINEVLVLSQINHRNVVKLLGCCLETEVPLLVYEFISSGTLFDH 492

Query: 158 IFGAPQPHFEP-LLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKL 216
           + G+    F+  L  +HRL++A+ +A  LAYLH     PI+  ++ +  IL +E   AK+
Sbjct: 493 LHGS---MFDSSLTWEHRLRIAIEVAGTLAYLHSYASIPIIHRDVKTANILLDENLTAKV 549

Query: 217 FDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQST 276
            DF  S  IP  +  + T  + G   Y  PEY   G+ NEK DVY+F  VL+ELL+G+  
Sbjct: 550 ADFGASRLIPMDQEQLTTMVQ-GTLGYLDPEYYNTGLLNEKSDVYSFGVVLMELLSGEKA 608

Query: 277 RDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLEC 333
               R   S +HL+ Y  + ++ NR  EI D  ++ + +    + + Q  AR+ +EC
Sbjct: 609 LCFERPQSS-KHLVSYFVSAMKENRLHEIIDGQVMNEYN----QREIQESARIAVEC 660

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9LMT9|WAKLL_ARATH Putative wall-associated receptor kinase-like 13 OS=Arabidopsis thaliana GN=WAKL13 PE=2 SV=1

 Score =  161 bits (407), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 106/319 (33%), Positives = 166/319 (52%), Gaps = 13/319 (4%)

Query: 22  ILTKFKDRTDKRTLMVRNGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFIKQ 81
           +L K +    KR    RNG  +L++ + ++ G+    ++FS++ELE AT+N+++ + I Q
Sbjct: 403 LLRKRRMTNRKRKFFKRNGGLLLQQQLNTTQGRVEKTKLFSSRELEKATDNFNDNRVIGQ 462

Query: 82  DSTYKLYKGFWQE-RLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETP 140
                +YKG   + R ++V K N    D   +F IN ++  +Q++H+H++KL+GCCLET 
Sbjct: 463 GGQGTVYKGMLVDGRSVAVKKSNVVDEDKLQEF-INEVIILSQINHRHVVKLLGCCLETE 521

Query: 141 IPILVFEYGEYTTLRDRIFGAPQPHFE--PLLLKHRLKVAMGIAHALAYLHVGFPRPIVF 198
           +PILV+E+         +F      F+    L   R+++A+ I+ A +YLH     PI  
Sbjct: 522 VPILVYEF----IPNGNLFQHLHEEFDDYTALWGVRMRIAVDISGAFSYLHTAACSPIYH 577

Query: 199 GNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKL 258
            ++ S  IL +E+  AK+ DF  S S+    TH  T    G   Y  PEY     F EK 
Sbjct: 578 RDIKSTNILLDEKYRAKVSDFGTSRSVSIDHTHWTTVIS-GTVGYVDPEYYGSSHFTEKS 636

Query: 259 DVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTE 318
           DVY+F  VL+EL+TG+     L     +  L +Y +  ++ NR  EI D  I  D     
Sbjct: 637 DVYSFGVVLVELITGEKPVITLSETQEITGLADYFRLAMRENRLFEIIDARIRNDCKL-- 694

Query: 319 TEHQFQACARLTLECLNES 337
              Q  A A L L CL ++
Sbjct: 695 --EQVIAVANLALRCLKKT 711

Putative serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9LMP1|WAK2_ARATH Wall-associated receptor kinase 2 OS=Arabidopsis thaliana GN=WAK2 PE=1 SV=1

 Score =  160 bits (404), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/296 (32%), Positives = 161/296 (54%), Gaps = 8/296 (2%)

Query: 38  RNGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQERLI 97
           +NG  +L + ++ +       +IF+ K ++ ATN Y E + + Q     +YKG   +  I
Sbjct: 369 QNGGGMLIQRVSGAGPSNVDVKIFTEKGMKEATNGYHESRILGQGGQGTVYKGILPDNSI 428

Query: 98  SVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDR 157
             +K     + S  +  IN ++  +Q++H++++K++GCCLET +P+LV+E+    TL D 
Sbjct: 429 VAIKKARLGNRSQVEQFINEVLVLSQINHRNVVKVLGCCLETEVPLLVYEFINSGTLFDH 488

Query: 158 IFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLF 217
           + G+   +   L  +HRL++A  +A +LAYLH     PI+  ++ +  IL ++   AK+ 
Sbjct: 489 LHGSL--YDSSLTWEHRLRIATEVAGSLAYLHSSASIPIIHRDIKTANILLDKNLTAKVA 546

Query: 218 DFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTR 277
           DF  S  IP  +  + T  + G   Y  PEY   G+ NEK DVY+F  VL+ELL+GQ   
Sbjct: 547 DFGASRLIPMDKEQLTTIVQ-GTLGYLDPEYYNTGLLNEKSDVYSFGVVLMELLSGQKAL 605

Query: 278 DLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLEC 333
              R H   ++L+    +  +NNRF EI D  ++ +    + + + Q  AR+  EC
Sbjct: 606 CFERPH-CPKNLVSCFASATKNNRFHEIIDGQVMNE----DNQREIQEAARIAAEC 656

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9LMN8|WAK3_ARATH Wall-associated receptor kinase 3 OS=Arabidopsis thaliana GN=WAK3 PE=2 SV=2

 Score =  159 bits (403), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 159/302 (52%), Gaps = 8/302 (2%)

Query: 32  KRTLMVRNGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGF 91
           +R    +NG  +L + ++ +      ++IF+ + ++ ATN YDE + + Q     +YKG 
Sbjct: 374 RRQFFEQNGGGMLIQRLSGAGLSNIDFKIFTEEGMKEATNGYDESRILGQGGQGTVYKGI 433

Query: 92  WQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEY 151
             +  I  +K             I+ ++  +Q++H++++K++GCCLET +P+LV+E+   
Sbjct: 434 LPDNTIVAIKKARLADSRQVDQFIHEVLVLSQINHRNVVKILGCCLETEVPLLVYEFITN 493

Query: 152 TTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE 211
            TL D + G+       L  +HRL++A+ +A  LAYLH     PI+  ++ +  IL +E 
Sbjct: 494 GTLFDHLHGSIFD--SSLTWEHRLRIAIEVAGTLAYLHSSASIPIIHRDIKTANILLDEN 551

Query: 212 NVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELL 271
             AK+ DF  S  IP  +  + T  + G   Y  PEY   G+ NEK DVY+F  VL+ELL
Sbjct: 552 LTAKVADFGASKLIPMDKEQLTTMVQ-GTLGYLDPEYYTTGLLNEKSDVYSFGVVLMELL 610

Query: 272 TGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTL 331
           +GQ      R   S +HL+ Y  +  + NR  EI D  ++ +    +   + Q  AR+  
Sbjct: 611 SGQKALCFERPQAS-KHLVSYFVSATEENRLHEIIDDQVLNE----DNLKEIQEAARIAA 665

Query: 332 EC 333
           EC
Sbjct: 666 EC 667

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9S9M2|WAKLD_ARATH Wall-associated receptor kinase-like 4 OS=Arabidopsis thaliana GN=WAKL4 PE=2 SV=2

 Score =  159 bits (402), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 163/306 (53%), Gaps = 14/306 (4%)

Query: 33  RTLMVRNGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFW 92
           R    RNG  +LK+ +A   G     +IFS+ ELE AT+N++  + + Q     +YKG  
Sbjct: 384 RVFFRRNGGMLLKQQLARKEGNVEMSKIFSSNELEKATDNFNTNRVLGQGGQGTVYKGML 443

Query: 93  QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYT 152
            +  I  +K +++  +   +  IN +V  AQ++H++I+KL+GCCLET +P+LV+E+    
Sbjct: 444 VDGRIVAVKRSKAMDEDKVEEFINEVVVLAQINHRNIVKLLGCCLETEVPVLVYEFVPNG 503

Query: 153 TLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN 212
            L  R+      +   +  + RL +A+ IA AL+YLH     PI   ++ +  IL +E+ 
Sbjct: 504 DLCKRLRDECDDYI--MTWEVRLHIAIEIAGALSYLHSAASFPIYHRDIKTTNILLDEKY 561

Query: 213 VAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
             K+ DF  S S+   +TH+ T+   G + Y  PEY +   F +K DVY+F  VL+EL+T
Sbjct: 562 QVKVSDFGTSRSVTIDQTHLTTQVA-GTFGYVDPEYFQSSKFTDKSDVYSFGVVLVELIT 620

Query: 273 GQSTRDLLRTH---GSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARL 329
           G++    +++    G   H +  +K     NRF +I D  I  + +      Q  A A+L
Sbjct: 621 GKNPSSRVQSEENRGFAAHFVAAVK----ENRFLDIVDERIKDECNL----DQVMAVAKL 672

Query: 330 TLECLN 335
              CLN
Sbjct: 673 AKRCLN 678

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Plays a role in plant mineral nutrients response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q39191|WAK1_ARATH Wall-associated receptor kinase 1 OS=Arabidopsis thaliana GN=WAK1 PE=1 SV=2

 Score =  156 bits (394), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 156/308 (50%), Gaps = 8/308 (2%)

Query: 26  FKDRTDKRTLMVRNGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFIKQDSTY 85
            KD   +     +NG  +L + ++ +       +IF+   ++ ATN Y E + + Q    
Sbjct: 362 LKDTKLREQFFEQNGGGMLTQRLSGAGPSNVDVKIFTEDGMKKATNGYAESRILGQGGQG 421

Query: 86  KLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV 145
            +YKG   +  I  +K       S  +  IN ++  +Q++H++++KL+GCCLET +P+LV
Sbjct: 422 TVYKGILPDNSIVAIKKARLGDSSQVEQFINEVLVLSQINHRNVVKLLGCCLETEVPLLV 481

Query: 146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLC 205
           +E+    TL D + G+       L  +HRLK+A+ +A  LAYLH     PI+  ++ +  
Sbjct: 482 YEFITNGTLFDHLHGSMID--SSLTWEHRLKIAIEVAGTLAYLHSSASIPIIHRDIKTAN 539

Query: 206 ILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFST 265
           IL +    AK+ DF  S  IP  +  + T  + G   Y  PEY   G+ NEK DVY+F  
Sbjct: 540 ILLDVNLTAKVADFGASRLIPMDKEELETMVQ-GTLGYLDPEYYNTGLLNEKSDVYSFGV 598

Query: 266 VLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQA 325
           VL+ELL+GQ      R   S +HL+ Y     + NR  EI    ++ +    +   + Q 
Sbjct: 599 VLMELLSGQKALCFKRPQSS-KHLVSYFATATKENRLDEIIGGEVMNE----DNLKEIQE 653

Query: 326 CARLTLEC 333
            AR+  EC
Sbjct: 654 AARIAAEC 661

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development. Required during plant's response to pathogen infection and in plant defense against heavy metal toxicity. Phosphorylates the oxygen-evolving enhancer protein 2 (OEE2) in an GRP-3-dependent manner.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
255582635	331	receptor protein kinase, putative [Ricin	0.905	0.924	0.472	1e-70
224123144	344	predicted protein [Populus trichocarpa]	0.914	0.898	0.439	6e-64
255542662	330	serine-threonine protein kinase, plant-t	0.872	0.893	0.425	1e-57
255542658	356	serine-threonine protein kinase, plant-t	0.908	0.862	0.404	2e-56
255542656	331	serine-threonine protein kinase, plant-t	0.878	0.897	0.414	2e-54
255542676	247	serine-threonine protein kinase, plant-t	0.683	0.935	0.458	3e-49
359495254	331	PREDICTED: wall-associated receptor kina	0.902	0.921	0.383	8e-45
297820570	353	kinase family protein [Arabidopsis lyrat	0.920	0.881	0.343	2e-44
297740943	321	unnamed protein product [Vitis vinifera]	0.875	0.922	0.391	2e-44
15230388	351	protein kinase family protein [Arabidops	0.920	0.886	0.331	2e-41

>gi|255582635|ref|XP_002532098.1| receptor protein kinase, putative [Ricinus communis] gi|223528232|gb|EEF30288.1| receptor protein kinase, putative [Ricinus communis]

 Score =  272 bits (696), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 148/313 (47%), Positives = 201/313 (64%), Gaps = 7/313 (2%)

Query: 27  KDRTDKRTLMVRNGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFIKQDSTYK 86
           K  +++ +LM  NG  +L++LIAS  G+ NP RIFSA EL  AT++YD RK I QDS YK
Sbjct: 5   KAESERISLM--NGRMLLEKLIASCDGRCNPIRIFSADELSRATDDYDPRKIITQDSGYK 62

Query: 87  LYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCLETPIPILV 145
           LY G   ER ISV K+ +       K+  N+I++A QM  HK+ LKL+GCCLET IP+LV
Sbjct: 63  LYNGLLHERTISVKKFKDK--SEQYKYCYNDIMFATQMSKHKNFLKLLGCCLETQIPVLV 120

Query: 146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLC 205
           FE  EY TL  R++G  +  ++PLL +HRLK+A+ IA+A++YLH  F RPIVF N+  L 
Sbjct: 121 FEPIEYGTLAGRLYGPNKTLYQPLLWRHRLKIAVEIANAVSYLHTAFSRPIVFRNIKPLN 180

Query: 206 ILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFST 265
           I  +E +VAKL DFS ++SIPEGE+H +     GAW   APEY +   FNE  DVY F  
Sbjct: 181 IFLDECHVAKLSDFSLAVSIPEGESH-VKDMLAGAWGLIAPEYAKTSCFNESQDVYNFGV 239

Query: 266 VLLELLTGQSTRDLLRTH-GSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQ 324
            LL LLTGQ   D  R   G    L++++K ++ ++RF E  D II+ + S  E + Q Q
Sbjct: 240 FLLMLLTGQKVVDSYRPQAGEELGLVDHVKKFIADDRFYETVDSIILGEGSLPEKDQQLQ 299

Query: 325 ACARLTLECLNES 337
           A   L+  C++E+
Sbjct: 300 AFTLLSFRCISEA 312

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123144|ref|XP_002319005.1| predicted protein [Populus trichocarpa] gi|222857381|gb|EEE94928.1| predicted protein [Populus trichocarpa]

 Score =  250 bits (639), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 138/314 (43%), Positives = 197/314 (62%), Gaps = 5/314 (1%)

Query: 24  TKFKDRTDKRTLMVRNGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFIKQDS 83
           TK   + +K T  ++NG+++L++L+    GK N  R FSA EL+ ATNNYD +K +  DS
Sbjct: 7   TKKDKKVNKETAFIKNGSKLLEKLVDICDGKCNSIRSFSATELKKATNNYDPQKILTGDS 66

Query: 84  TYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCLETPIP 142
            YKLYKGF Q R +SV K+ +   D   ++  N+IVYA++M  HK  +KL+GCCLE  IP
Sbjct: 67  GYKLYKGFLQGRPVSVKKFKDD--DEQYEYCFNDIVYASKMSVHKSFMKLLGCCLEARIP 124

Query: 143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLI 202
           ILVFEY    TL D ++G+ +   +PLL   R K+AM +A+A+A+LH  F +PIVF N+ 
Sbjct: 125 ILVFEYVGDWTLSDFLWGSEEARCQPLLWIPRSKIAMDMANAVAFLHAAFSKPIVFRNIK 184

Query: 203 SLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYT 262
            L IL ++ + AKL DFS SISIP+GE+H +  S  GA    APEY   G FNEK DV+ 
Sbjct: 185 PLNILLDDNHEAKLSDFSISISIPKGESH-VRDSVAGATGLIAPEYLTTGNFNEKQDVFN 243

Query: 263 FSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQ 322
           F   LL LL+GQ   D  R    +  L +++K  ++++RF ++ D  I+ + +    E Q
Sbjct: 244 FGVFLLVLLSGQMVVDFSRPEKEIL-LQDHVKKCIEDDRFNKVIDSTIIAEGTWPGKEQQ 302

Query: 323 FQACARLTLECLNE 336
            QA   L+L C++E
Sbjct: 303 LQAYTALSLRCISE 316

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542662|ref|XP_002512394.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223548355|gb|EEF49846.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  229 bits (585), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 128/301 (42%), Positives = 185/301 (61%), Gaps = 6/301 (1%)

Query: 39  NGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQERLIS 98
           NG+++L++ +A  +G+ NP R FS++ELE AT NY+E++ +K D  ++LYKGF Q+R + 
Sbjct: 10  NGSKLLEKSVAFCNGRCNPIRNFSSEELEKATRNYNEKQVLKLDGYFELYKGFLQDRPVI 69

Query: 99  VMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCLETPIPILVFEYGEYTTLRDR 157
           V K+ E   +   + +IN IVYA+ M  H + +KL+GCCLETP PILVFE  +  TL DR
Sbjct: 70  VKKFLEVGVE---QLAINEIVYASAMSVHINSIKLLGCCLETPSPILVFESAKEKTLADR 126

Query: 158 IFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLF 217
           I      HFEP+  K RLK+   IA+ + Y+H  FPRPIV  N+ +  IL +E+ VAKL 
Sbjct: 127 IIDRNDDHFEPVKWKLRLKIVADIANVVVYIHTAFPRPIVHRNIKASNILLDEDYVAKLS 186

Query: 218 DFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTR 277
           DFS  +SIPEG++  +     G     A E    G FNEK DVY+F  VLL +LTGQ + 
Sbjct: 187 DFSLCVSIPEGKSR-VRDIMAGTMGLIASESLATGYFNEKSDVYSFGVVLLVVLTGQRSF 245

Query: 278 DLLRTH-GSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNE 336
           D  RT  G    L+ ++K +++   F E+ DPIIV + +      + +    L L C+++
Sbjct: 246 DFSRTETGEQFLLVNHVKKHIETGGFKEMVDPIIVAEEAGNRKGQELEDFRDLALRCIHD 305

Query: 337 S 337
           S
Sbjct: 306 S 306

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542658|ref|XP_002512392.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223548353|gb|EEF49844.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 134/331 (40%), Positives = 196/331 (59%), Gaps = 24/331 (7%)

Query: 26  FKDRTDK-RTLMVRNGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFIKQDST 84
           F+D  D+  T ++RNG  +L++ IA ++G+ NP R FS  EL+ ATN+Y +   I +   
Sbjct: 5   FRDNMDENETALMRNGGILLEKSIAFNNGRGNPIRWFSVDELQTATNSYSQNNVIYEGGW 64

Query: 85  YKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCLETPIPI 143
           + LYKGF ++R + V +Y  +  +  C   IN+IV+A++M  HK++LKL+GCCLE+ IPI
Sbjct: 65  HTLYKGFLRDRPVIVKRYRNNIHERVC--PINDIVFASEMSRHKNVLKLLGCCLESEIPI 122

Query: 144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLIS 203
           LVFEY E   L+D I+      F PLL K RLK+A+  A+ +AYLH   PRP+V  ++  
Sbjct: 123 LVFEYAEKGKLQDYIYKTDSASFRPLLWKSRLKIAVDAANVIAYLHTACPRPVVHRDITL 182

Query: 204 LCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTF 263
             I  +E+ VAK+ DF+ S+SI EGETH I     G   Y+APEY R G+FNEK+DV++F
Sbjct: 183 SNIWLDEDYVAKVTDFTVSMSILEGETH-IEDFVLGTCGYAAPEYVRSGIFNEKIDVFSF 241

Query: 264 STVLLELLTGQ-----STRDLL---RTHGSVRHLI---------EYLKNYLQNNR--FTE 304
             +LL LLT Q     +  ++L   R    +  LI         E L+ +L   R     
Sbjct: 242 GVLLLVLLTDQKPFQGNWENILKDARFDEIIGSLIVEKGLWSEKEQLETFLTRTRQKLDL 301

Query: 305 IADPIIVQDLSCTETEHQFQACARLTLECLN 335
             DPIIV++    E E Q +A   L ++C++
Sbjct: 302 TIDPIIVEEGPWPEKEQQLKAFLMLGVQCID 332

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542656|ref|XP_002512391.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223548352|gb|EEF49843.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/309 (41%), Positives = 182/309 (58%), Gaps = 12/309 (3%)

Query: 26  FKDRTDKRTLMVRNGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFIKQDSTY 85
           F D   ++ LM RNG  +L++ +A ++G+ NP R FS KEL+ ATN+Y +      D T 
Sbjct: 5   FGDSKYEKALM-RNGRSLLEKSVALNNGRGNPVRCFSVKELQNATNSYSQHNVFYIDGTC 63

Query: 86  KLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCLETPIPIL 144
           +LYKG  ++R + V KY+  +        +++IV A++M  H+++LKL+GCCLE+ IPI 
Sbjct: 64  RLYKGLIRDRPVIVKKYDYKHPSED---PVSDIVIASEMSVHRNVLKLLGCCLESEIPIP 120

Query: 145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISL 204
           VFEY E  TL D +          LL K RLK+A+ +A  +AYLH  FPRPIV  ++   
Sbjct: 121 VFEYAEKGTLEDYV------QKTALLWKDRLKIAVDVASVIAYLHTAFPRPIVHRDISLA 174

Query: 205 CILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFS 264
            IL +E+  AK+  FS SISIPEGETH I     G   Y APEY    +FNEK+DVY+F 
Sbjct: 175 SILLDEDCAAKVTGFSLSISIPEGETH-IEDEVAGTIGYVAPEYFMKRMFNEKIDVYSFG 233

Query: 265 TVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQ 324
            VLL LLTG        T      L+ +++  ++N RF EI DP I+++    E E Q +
Sbjct: 234 VVLLVLLTGHGPILRSPTTNESHALVVFVEAKIKNERFNEIIDPAILEEGPWPEKEQQLK 293

Query: 325 ACARLTLEC 333
           +   L ++C
Sbjct: 294 SFLTLAMQC 302

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542676|ref|XP_002512401.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223548362|gb|EEF49853.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 110/240 (45%), Positives = 158/240 (65%), Gaps = 9/240 (3%)

Query: 36  MVRNGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQER 95
           ++RNG  +L++ IA ++G+ NP R FS +EL+ ATN+Y +   I +   +  YKGF +ER
Sbjct: 8   LMRNGGILLEKSIAFNNGRGNPIRCFSVEELQTATNSYSQNNVIYEGGWHTHYKGFLRER 67

Query: 96  LISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCLETPIPILVFEYGEYTTL 154
            + V +Y  +  +  C   IN+IV+A++M  HK++LKL+GCCLE+ IPILVFEY E   L
Sbjct: 68  PVIVKRYRTNIHERVC--PINDIVFASEMSRHKNVLKLLGCCLESEIPILVFEYAEKGNL 125

Query: 155 RDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVA 214
            D I+      F     + RLK+A+  A+ +AYLH  FPRP+V  ++    +  +E++VA
Sbjct: 126 HDYIYKTDSASF-----RRRLKIAVDAANVIAYLHTAFPRPVVHRHITLSNVWLDEDSVA 180

Query: 215 KLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
           K+ DFS S+SIPEGETH I     G   Y+APEY R G+FNEK+DV++F  +LL LLTGQ
Sbjct: 181 KVTDFSLSMSIPEGETH-IEDFVMGTCGYAAPEYARSGIFNEKIDVFSFGVLLLVLLTGQ 239

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495254|ref|XP_002271826.2| PREDICTED: wall-associated receptor kinase-like 8-like [Vitis vinifera]

 Score =  187 bits (474), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 124/323 (38%), Positives = 180/323 (55%), Gaps = 18/323 (5%)

Query: 23  LTKFKDRTDKRTLMVRNGARVLKELIASSHGKY-NPYRIFSAKELEIATNNYDERKFIKQ 81
           + K + +  K+  M++NG+ +LKE I+  +GKY NP R F  KEL+ AT++Y+       
Sbjct: 1   MGKIRRKEMKKESMLKNGSLLLKERISYFNGKYFNPIRSFCMKELQNATDDYNTGLIFDH 60

Query: 82  D-STYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCLET 139
           D      YKG  + R ISV     +      + +IN IV A+QM  HK+ LKL+GCCLET
Sbjct: 61  DVGNCIWYKGSLEGRTISV----RTNFYEGVEMAINEIVIASQMSAHKNALKLLGCCLET 116

Query: 140 PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFG 199
            IPILV+E+    +L DRIF  P P    L  K RL++A  IA+ +AYLH+ FPR I+  
Sbjct: 117 RIPILVYEFPSGGSLIDRIFSPPNP----LSWKSRLRIAYDIANVIAYLHIAFPRSIIHT 172

Query: 200 NLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLD 259
           ++       +++  AKL DFS SI++PEGE H+    R G + Y APE    GV+ EK D
Sbjct: 173 DIKPSSFFLDQDCAAKLSDFSLSITLPEGEMHVEDEIR-GTFGYLAPETLISGVYTEKND 231

Query: 260 VYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTET 319
           V++F  +LLELL G+    ++  H     + +Y ++++       I DPII+        
Sbjct: 232 VFSFGILLLELLIGKRAHSIM--HEERASIQDYAQSFVNTYDINGIVDPIILAQPRGIHE 289

Query: 320 EHQFQACARLTLEC----LNESP 338
           E QFQA   L + C    ++E P
Sbjct: 290 ELQFQAIFDLAMRCSMKDMDERP 312

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820570|ref|XP_002878168.1| kinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297324006|gb|EFH54427.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 111/323 (34%), Positives = 179/323 (55%), Gaps = 12/323 (3%)

Query: 20  GSILTKFKDRTDKRTLMVRNGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFI 79
           GS   K KD+T +    + NG+  L EL+A  +GK  P R FS +++  ATNN+D   F+
Sbjct: 11  GSRTRKEKDKTKR--WFLDNGSIFLTELVADCNGKSIPIRSFSPEQILKATNNFDSSCFV 68

Query: 80  KQDSTYKLYKGFWQERLISVMKYNESYSDSA---CKFSINNIVYAAQM-DHKHILKLIGC 135
            QD  YK Y+G  ++R   + +++E          K   N+IV +A+M +H + L+L+GC
Sbjct: 69  SQDVYYKWYRGQIEDRSYMIKRFSEDEITGKRHRVKEVYNDIVLSARMSNHSNFLQLLGC 128

Query: 136 CLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKH--RLKVAMGIAHALAYLHVGFP 193
           CLE P P+LVFE+ EY  L  R  G    + E  LL    RLK+   IA+A++YLH+ FP
Sbjct: 129 CLEFPFPVLVFEFAEYGALNQR--GGIMVNGEEYLLPWSVRLKIGKEIANAVSYLHMAFP 186

Query: 194 RPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGV 253
           + I+  ++  + +  ++   AKL D S SIS+PEG++ I      G + Y  P Y +   
Sbjct: 187 KIIIHRDVKPMHVFLDKNWTAKLSDLSFSISLPEGKSRIEAEWVLGTFGYLDPLYHKTSF 246

Query: 254 FNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQD 313
             E  DVY+F    L +LTG+    +  + G ++ ++ Y++   +N +  E+ DP++++D
Sbjct: 247 VTEYTDVYSFGICFLVILTGKPAI-ITISDGDLQGILSYVRGLCENGKLDEVIDPMLMKD 305

Query: 314 LSCTETEHQFQACARLTLECLNE 336
           ++  +   Q +AC  L L C  E
Sbjct: 306 ITSGQ-RLQVEACVVLALRCCEE 327

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740943|emb|CBI31255.3| unnamed protein product [Vitis vinifera]

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/314 (39%), Positives = 176/314 (56%), Gaps = 18/314 (5%)

Query: 32  KRTLMVRNGARVLKELIASSHGKY-NPYRIFSAKELEIATNNYDERKFIKQD-STYKLYK 89
           K+  M++NG+ +LKE I+  +GKY NP R F  KEL+ AT++Y+       D      YK
Sbjct: 2   KKESMLKNGSLLLKERISYFNGKYFNPIRSFCMKELQNATDDYNTGLIFDHDVGNCIWYK 61

Query: 90  GFWQERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCLETPIPILVFEY 148
           G  + R ISV     +      + +IN IV A+QM  HK+ LKL+GCCLET IPILV+E+
Sbjct: 62  GSLEGRTISV----RTNFYEGVEMAINEIVIASQMSAHKNALKLLGCCLETRIPILVYEF 117

Query: 149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILF 208
               +L DRIF  P P    L  K RL++A  IA+ +AYLH+ FPR I+  ++       
Sbjct: 118 PSGGSLIDRIFSPPNP----LSWKSRLRIAYDIANVIAYLHIAFPRSIIHTDIKPSSFFL 173

Query: 209 NEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLL 268
           +++  AKL DFS SI++PEGE H+    R G + Y APE    GV+ EK DV++F  +LL
Sbjct: 174 DQDCAAKLSDFSLSITLPEGEMHVEDEIR-GTFGYLAPETLISGVYTEKNDVFSFGILLL 232

Query: 269 ELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACAR 328
           ELL G+    ++  H     + +Y ++++       I DPII+        E QFQA   
Sbjct: 233 ELLIGKRAHSIM--HEERASIQDYAQSFVNTYDINGIVDPIILAQPRGIHEELQFQAIFD 290

Query: 329 LTLEC----LNESP 338
           L + C    ++E P
Sbjct: 291 LAMRCSMKDMDERP 304

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230388|ref|NP_191330.1| protein kinase family protein [Arabidopsis thaliana] gi|4678276|emb|CAB41184.1| putative protein [Arabidopsis thaliana] gi|21537362|gb|AAM61703.1| protein kinase-like protein [Arabidopsis thaliana] gi|51968400|dbj|BAD42892.1| protein kinase - like protein [Arabidopsis thaliana] gi|51969234|dbj|BAD43309.1| protein kinase - like protein [Arabidopsis thaliana] gi|51969278|dbj|BAD43331.1| protein kinase - like protein [Arabidopsis thaliana] gi|332646167|gb|AEE79688.1| protein kinase family protein [Arabidopsis thaliana]

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 107/323 (33%), Positives = 176/323 (54%), Gaps = 12/323 (3%)

Query: 20  GSILTKFKDRTDKRTLMVRNGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFI 79
           GS   K KD+   +   + NG+  L+EL+A  +GK  P R FS +++  ATNN+D   F+
Sbjct: 9   GSGTRKEKDKA--KRWFLDNGSIFLRELVADCNGKSIPIRSFSPEQILKATNNFDSSCFV 66

Query: 80  KQDSTYKLYKGFWQERLISVMKYNESYSDSA---CKFSINNIVYAAQM-DHKHILKLIGC 135
            QD  YK Y+G  ++R   + +++E          K   N+IV +A+M +H + L+L+GC
Sbjct: 67  SQDVYYKWYRGEIEDRSYMIKRFSEDEITGKRHRVKEVYNDIVLSARMSNHSNFLQLLGC 126

Query: 136 CLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKH--RLKVAMGIAHALAYLHVGFP 193
           CLE P P+LVFE+ E+  +  R  G    + E  LL    RLK+   IA+A+ YLH  FP
Sbjct: 127 CLEFPFPVLVFEFAEHGAMNQR--GGVIVNGEESLLPWSVRLKIGKEIANAVTYLHTAFP 184

Query: 194 RPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGV 253
           + I+  ++  + +  ++   AKL D S SIS+PEG++ I      G + Y  P Y +   
Sbjct: 185 KIIIHRDVKPMHVFLDKNWTAKLSDLSFSISLPEGKSRIEAEWVLGTFGYIDPLYHKTCF 244

Query: 254 FNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQD 313
             E  DVY+F   LL ++TG+    +  + G ++ ++  ++   +N +  E+ DP +++D
Sbjct: 245 VTEYTDVYSFGICLLVIITGKPAI-MTISDGDLQGILSLVRELCENGKLDEVIDPRLMKD 303

Query: 314 LSCTETEHQFQACARLTLECLNE 336
           ++  +   Q +AC  L L C  E
Sbjct: 304 ITSGQ-RLQVEACVVLALRCCKE 325

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
TAIR|locus:2076586	351	AT3G57710 [Arabidopsis thalian	0.920	0.886	0.337	3.2e-42
TAIR|locus:2076671	355	AT3G57730 [Arabidopsis thalian	0.914	0.870	0.341	6.6e-42
TAIR|locus:2076681	359	AT3G57720 [Arabidopsis thalian	0.899	0.846	0.331	7.5e-41
TAIR|locus:2032875	720	AT1G16260 [Arabidopsis thalian	0.896	0.420	0.340	6.4e-40
TAIR|locus:2200562	748	WAKL2 "wall associated kinase-	0.872	0.394	0.343	4.5e-39
TAIR|locus:2076596	340	AT3G57700 [Arabidopsis thalian	0.899	0.894	0.344	1.3e-38
TAIR|locus:2094468	433	AT3G25490 [Arabidopsis thalian	0.884	0.690	0.314	2.1e-38
TAIR|locus:2014952	738	WAK4 "wall associated kinase 4	0.881	0.403	0.321	2.5e-38
TAIR|locus:2030988	764	AT1G17910 [Arabidopsis thalian	0.905	0.400	0.338	1e-37
TAIR|locus:2014897	741	WAK3 "wall associated kinase 3	0.884	0.403	0.328	1.1e-37

TAIR|locus:2076586 AT3G57710 [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 109/323 (33%), Positives = 177/323 (54%)

Query:    20 GSILTKFKDRTDKRTLMVRNGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFI 79
             GS   K KD+  KR  +  NG+  L+EL+A  +GK  P R FS +++  ATNN+D   F+
Sbjct:     9 GSGTRKEKDKA-KRWFL-DNGSIFLRELVADCNGKSIPIRSFSPEQILKATNNFDSSCFV 66

Query:    80 KQDSTYKLYKGFWQERLISVMKYNESYSDSA---CKFSINNIVYAAQM-DHKHILKLIGC 135
              QD  YK Y+G  ++R   + +++E          K   N+IV +A+M +H + L+L+GC
Sbjct:    67 SQDVYYKWYRGEIEDRSYMIKRFSEDEITGKRHRVKEVYNDIVLSARMSNHSNFLQLLGC 126

Query:   136 CLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKH--RLKVAMGIAHALAYLHVGFP 193
             CLE P P+LVFE+ E+  +  R  G    + E  LL    RLK+   IA+A+ YLH  FP
Sbjct:   127 CLEFPFPVLVFEFAEHGAMNQR--GGVIVNGEESLLPWSVRLKIGKEIANAVTYLHTAFP 184

Query:   194 RPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGV 253
             + I+  ++  + +  ++   AKL D S SIS+PEG++ I      G + Y  P Y +   
Sbjct:   185 KIIIHRDVKPMHVFLDKNWTAKLSDLSFSISLPEGKSRIEAEWVLGTFGYIDPLYHKTCF 244

Query:   254 FNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQD 313
               E  DVY+F   LL ++TG+     + + G ++ ++  ++   +N +  E+ DP +++D
Sbjct:   245 VTEYTDVYSFGICLLVIITGKPAIMTI-SDGDLQGILSLVRELCENGKLDEVIDPRLMKD 303

Query:   314 LSCTETEHQFQACARLTLECLNE 336
             ++  +   Q +AC  L L C  E
Sbjct:   304 ITSGQ-RLQVEACVVLALRCCKE 325

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2076671 AT3G57730 [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 108/316 (34%), Positives = 172/316 (54%)

Query:    25 KFKDRTDKRTL-MVRNGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFIKQDS 83
             K K+++ K+    + NG+  LKELI   +GK  P R F++ ++  AT N+D   F+ ++ 
Sbjct:    18 KKKEKSMKKERWFLENGSIFLKELIVDCNGKSIPIRSFTSSQIRKATKNFDLSCFVAEEG 77

Query:    84 TYKLYKGFWQERLISVMKYNE-SYSDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPI 141
              Y  YKG  ++R   + +++E   +D        +IV +A+M +H + LKL+GCCLE P 
Sbjct:    78 FYIWYKGVIEDRSYMIKRFSEYKVTDYRVSEVYKDIVLSARMSNHNNFLKLLGCCLEFPF 137

Query:   142 PILVFEYGEYTTLRDRIFGAPQPHFEPLL-LKHRLKVAMGIAHALAYLHVGFPRPIVFGN 200
             P+LVFE+ E+  L  R  G      E LL L  RLK+   IA+ALAYLH+ FP+ I++ +
Sbjct:   138 PVLVFEFAEHGVLNYR-GGITVNGEESLLPLSLRLKIGKEIANALAYLHMAFPKIIIYRD 196

Query:   201 LISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDV 260
             +  L +  +    AKL D S SIS+ EG++ I      G + Y  P Y    +  E  DV
Sbjct:   197 VKPLHVFLDNNWTAKLSDLSFSISLEEGKSQIEAEDVLGTYGYLDPLYFATRIVTEYTDV 256

Query:   261 YTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETE 320
             Y+F   L+ ++TG S      + G    ++ Y+K   +N +  EI  P+I+++++  +  
Sbjct:   257 YSFGVFLMVVITGISVY-FTGSDGYPVGILGYMKGLAENGKLNEIVYPMIMKEMTSAQ-R 314

Query:   321 HQFQACARLTLECLNE 336
              Q +AC  L L C  E
Sbjct:   315 LQVEACVLLALRCCEE 330

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2076681 AT3G57720 [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 104/314 (33%), Positives = 171/314 (54%)

Query:    25 KFKDRTDKRTLMVRNGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFIKQDST 84
             K KD  +++  +  NG+  LKELIA  +GK  P R FS+ ++  AT+N+    F+  +  
Sbjct:    23 KEKDIQEEKWFL-DNGSIFLKELIADCNGKSIPIRNFSSDQILKATSNFGSSCFVTAEGF 81

Query:    85 YKLYKGFWQERLISVMKYNESYSDSACKFS--INNIVYAAQM-DHKHILKLIGCCLETPI 141
             Y  YKG  ++R   + +++E Y  +  + +   N IV +A+M +H + LKLIG CLE  +
Sbjct:    82 YVWYKGIIEDRSYMIKRFSE-YKVTQYRVAEVYNEIVLSARMSNHNNFLKLIGFCLEFSL 140

Query:   142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLL--KHRLKVAMGIAHALAYLHVGFPRPIVFG 199
             P+LVFEY E+  L  R  G    + E ++L    RLK+   IA+A+ YLH+ FP+ ++  
Sbjct:   141 PVLVFEYAEHGVLNHR--GGVIVNGEEVILPLSLRLKIGKEIANAVTYLHMAFPKILIHR 198

Query:   200 NLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLD 259
             ++    +  +E    KL DFS SI++PEG++ I      G   Y  P Y    +  E  D
Sbjct:   199 HIKPRNVFLDENWTPKLSDFSISINLPEGKSRIEVECVQGTIGYLDPVYYTTKMVTEYTD 258

Query:   260 VYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTET 319
             VY+F   L+ +LTG+       + G  +H+  Y+K + +N +   + DP +++D++  + 
Sbjct:   259 VYSFGVFLMVILTGKPALASTSSDGDYKHIASYVKGFHENGQLDGVIDPKVMEDITSAQK 318

Query:   320 EHQFQACARLTLEC 333
              H  +AC  L L C
Sbjct:   319 VH-VEACVVLALRC 331

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2032875 AT1G16260 [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 6.4e-40, P = 6.4e-40
 Identities = 106/311 (34%), Positives = 170/311 (54%)

Query:    25 KFKDRTDKRTLMVRNGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFIKQDST 84
             K K    KR    RNG  +L++  +  HG  N  ++FS+ +LE AT+ ++  + + Q   
Sbjct:   342 KRKVAKQKRKFFQRNGGLLLQQQTSFLHGSVNRTKVFSSNDLENATDRFNASRILGQGGQ 401

Query:    85 YKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL 144
               +YKG  ++ +I  +K +++  +   +  IN I+  +Q++H++++K++GCCLET +PIL
Sbjct:   402 GTVYKGMLEDGMIVAVKKSKALKEENLEEFINEIILLSQINHRNVVKILGCCLETEVPIL 461

Query:   145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISL 204
             V+E+     L D +   P   F P+  + RL +A  +A AL+YLH     PI   ++ S 
Sbjct:   462 VYEFIPNRNLFDHLHN-PSEDF-PMSWEVRLCIACEVADALSYLHSAVSIPIYHRDVKST 519

Query:   205 CILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFS 264
              IL +E++ AK+ DF  S S+   +TH+ T  + G   Y  PEY +   F  K DVY+F 
Sbjct:   520 NILLDEKHRAKVSDFGISRSVAIDDTHLTTIVQ-GTIGYVDPEYLQSNHFTGKSDVYSFG 578

Query:   265 TVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQ 324
              +L+ELLTG+    LLR    VR L  Y    ++N+R  EI D  I ++  C   E    
Sbjct:   579 VLLIELLTGEKPVSLLRRQ-EVRMLGAYFLEAMRNDRLHEILDARIKEE--CDREE--VL 633

Query:   325 ACARLTLECLN 335
             A A+L   CL+
Sbjct:   634 AVAKLARRCLS 644

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2200562 WAKL2 "wall associated kinase-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 424 (154.3 bits), Expect = 4.5e-39, P = 4.5e-39
 Identities = 104/303 (34%), Positives = 163/303 (53%)

Query:    33 RTLMVRNGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFW 92
             R    RNG  +LK+ +A   G     RIFS+ ELE AT+N+++ + + Q     +YKG  
Sbjct:   376 RKFFRRNGGMLLKQQLARKEGNVEMSRIFSSHELEKATDNFNKNRVLGQGGQGTVYKGML 435

Query:    93 QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYT 152
              +  I  +K +++  +   +  IN +V  AQ++H++I+KL+GCCLET +P+LV+E+    
Sbjct:   436 VDGRIVAVKRSKAVDEDRVEEFINEVVVLAQINHRNIVKLLGCCLETEVPVLVYEFVPNG 495

Query:   153 TLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN 212
              L  R+      +   +  + RL +A+ IA AL+YLH     PI   ++ +  IL +E N
Sbjct:   496 DLCKRLHDESDDY--TMTWEVRLHIAIEIAGALSYLHSAASFPIYHRDIKTTNILLDERN 553

Query:   213 VAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
              AK+ DF  S S+   +TH+ T+   G + Y  PEY +   F EK DVY+F  VL+ELLT
Sbjct:   554 RAKVSDFGTSRSVTIDQTHLTTQVA-GTFGYVDPEYFQSSKFTEKSDVYSFGVVLVELLT 612

Query:   273 GQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLE 332
             G+     +R+  + R L  +    ++ NR  +I D  I  +  C     Q  + A L   
Sbjct:   613 GEKPSSRVRSEEN-RGLAAHFVEAVKENRVLDIVDDRIKDE--CNMD--QVMSVANLARR 667

Query:   333 CLN 335
             CLN
Sbjct:   668 CLN 670

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;IDA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0010200 "response to chitin" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2076596 AT3G57700 [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 111/322 (34%), Positives = 172/322 (53%)

Query:    25 KFKDRTDKRTLMVRNGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFIKQDST 84
             K K + ++   + +NG+ +L+ELIA+S G YNP R FS+ ++  ATN++D    I +D  
Sbjct:     8 KKKQKKEEEINLQKNGSLLLEELIATSGGIYNPIRTFSSDQILQATNHFDWNYVISEDR- 66

Query:    85 YKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL 144
             +  YKG  + R + + K+ +     A  F  +  V +    HK++LKL+GCCLE P P+L
Sbjct:    67 FVWYKGMIENRPVLIKKFQDCSVFDADNFYRDIAVSSLMSSHKNVLKLLGCCLEFPRPVL 126

Query:   145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISL 204
             V EY E+  L     G       P  +  RL++A  IA A+AYLH  FPR I+  +L  L
Sbjct:   127 VCEYPEHGALNCIRCGKEGVRSFPWNV--RLRIAKEIADAVAYLHTEFPRTIIHRDL-KL 183

Query:   205 CILFNEEN-VAKLFDFSESISIPEGETHI---ITRSRFGAWTYSAPEYKRGGVFNEKLDV 260
               +F +EN  AKL  FS SI +PEGET +   + R+     +Y  P+Y   G+  E +D+
Sbjct:   184 ANIFLDENWSAKLSSFSLSIVLPEGETGVNDMVCRTS----SYIEPDYFNTGLVTENVDI 239

Query:   261 YTFSTVLLELLTGQSTRDL-LRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTET 319
             Y+   ++L +LTG+S  +  +  +  V  L  Y+  +L+    TE+ DP I+   S    
Sbjct:   240 YSLGIIMLIILTGKSEYNSEVAVYLPV--LPVYVGKFLERGLLTELIDPSILDSTSDDIP 297

Query:   320 EH---QFQACARLTLECLNESP 338
             +H   Q +A   L   C+   P
Sbjct:   298 KHSRLQMEAFIELAFRCVRFRP 319

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2094468 AT3G25490 [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 97/308 (31%), Positives = 166/308 (53%)

Query:    27 KDRTDKRTLMV-RNGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFIKQDSTY 85
             KD   +R L   +NG  +L E ++ +      ++IF+ ++++ ATN YD  + + Q   +
Sbjct:    61 KDTKIQRQLFFEKNGGGMLIERLSGAGSSNIDFKIFTEEDMKEATNGYDVSRILGQGGQW 120

Query:    86 KLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV 145
              +YKG   +  I  +K      ++  +  IN ++  +Q++H++++KL+GCCLET +P+LV
Sbjct:   121 TVYKGILPDNSIVAIKKTRLGDNNQVEQFINEVLVLSQINHRNVVKLLGCCLETEVPLLV 180

Query:   146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLC 205
             +E+    +L D + G+       L  +HRL++A+ +A A+AYLH G   PI+  ++ +  
Sbjct:   181 YEFITGGSLFDHLHGSM--FVSSLTWEHRLEIAIEVAGAIAYLHSGASIPIIHRDIKTEN 238

Query:   206 ILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFST 265
             IL +E   AK+ DF  S   P  +  + T  + G   Y  PEY    + NEK DVY+F  
Sbjct:   239 ILLDENLTAKVADFGASKLKPMDKEQLTTMVQ-GTLGYLDPEYYTTWLLNEKSDVYSFGV 297

Query:   266 VLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQA 325
             VL+EL++GQ      R   S +HL+ Y     + NR  EI D  ++ +    E + +   
Sbjct:   298 VLMELISGQKALCFERPETS-KHLVSYFVLATKENRLHEIIDDQVLNE----ENQREIHE 352

Query:   326 CARLTLEC 333
              AR+ +EC
Sbjct:   353 AARVAVEC 360

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2014952 WAK4 "wall associated kinase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 2.5e-38, P = 2.5e-38
 Identities = 99/308 (32%), Positives = 166/308 (53%)

Query:    27 KDRTDKRTLMVRNGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFIKQDSTYK 86
             KD   ++    +NG  +L + ++ +       +IF+ + ++ AT+ YDE + + Q     
Sbjct:   364 KDTELRQQFFEQNGGGMLMQRLSGAGPSNVDVKIFTEEGMKEATDGYDENRILGQGGQGT 423

Query:    87 LYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF 146
             +YKG   +  I  +K      +S  +  IN ++  +Q++H++++KL+GCCLET +P+LV+
Sbjct:   424 VYKGILPDNSIVAIKKARLGDNSQVEQFINEVLVLSQINHRNVVKLLGCCLETEVPLLVY 483

Query:   147 EYGEYTTLRDRIFGAPQPHFEPLLL-KHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLC 205
             E+    TL D + G+    F+  L  +HRL++A+ IA  LAYLH     PI+  ++ +  
Sbjct:   484 EFISSGTLFDHLHGSM---FDSSLTWEHRLRMAVEIAGTLAYLHSSASIPIIHRDIKTAN 540

Query:   206 ILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFST 265
             IL +E   AK+ DF  S  IP  +  + T  + G   Y  PEY   G+ NEK DVY+F  
Sbjct:   541 ILLDENLTAKVADFGASRLIPMDKEDLATMVQ-GTLGYLDPEYYNTGLLNEKSDVYSFGV 599

Query:   266 VLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQA 325
             VL+ELL+GQ      R   S +H++ Y  +  + NR  EI D  ++ +      + + Q 
Sbjct:   600 VLMELLSGQKALCFERPQTS-KHIVSYFASATKENRLHEIIDGQVMNE----NNQREIQK 654

Query:   326 CARLTLEC 333
              AR+ +EC
Sbjct:   655 AARIAVEC 662

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0048527 "lateral root development" evidence=RCA;IMP

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2030988 AT1G17910 [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 1.0e-37, P = 1.0e-37
 Identities = 108/319 (33%), Positives = 169/319 (52%)

Query:    22 ILTKFKDRTDKRTLMVRNGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFIKQ 81
             +L K +    KR    RNG  +L++ + ++ G+    ++FS++ELE AT+N+++ + I Q
Sbjct:   403 LLRKRRMTNRKRKFFKRNGGLLLQQQLNTTQGRVEKTKLFSSRELEKATDNFNDNRVIGQ 462

Query:    82 DSTYKLYKGFWQE-RLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETP 140
                  +YKG   + R ++V K N    D   +F IN ++  +Q++H+H++KL+GCCLET 
Sbjct:   463 GGQGTVYKGMLVDGRSVAVKKSNVVDEDKLQEF-INEVIILSQINHRHVVKLLGCCLETE 521

Query:   141 IPILVFEYGEYTTLRDRIFGAPQPHFEPL--LLKHRLKVAMGIAHALAYLHVGFPRPIVF 198
             +PILV+E+         +F      F+    L   R+++A+ I+ A +YLH     PI  
Sbjct:   522 VPILVYEF----IPNGNLFQHLHEEFDDYTALWGVRMRIAVDISGAFSYLHTAACSPIYH 577

Query:   199 GNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKL 258
              ++ S  IL +E+  AK+ DF  S S+    TH  T    G   Y  PEY     F EK 
Sbjct:   578 RDIKSTNILLDEKYRAKVSDFGTSRSVSIDHTHWTTVIS-GTVGYVDPEYYGSSHFTEKS 636

Query:   259 DVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTE 318
             DVY+F  VL+EL+TG+     L     +  L +Y +  ++ NR  EI D  I  D  C +
Sbjct:   637 DVYSFGVVLVELITGEKPVITLSETQEITGLADYFRLAMRENRLFEIIDARIRND--C-K 693

Query:   319 TEHQFQACARLTLECLNES 337
              E Q  A A L L CL ++
Sbjct:   694 LE-QVIAVANLALRCLKKT 711

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2014897 WAK3 "wall associated kinase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 103/314 (32%), Positives = 173/314 (55%)

Query:    24 TKFKDRTD-KRTLMVRNGARVLKELIASSHGKYN-PYRIFSAKELEIATNNYDERKFIKQ 81
             TK +  T  +R    +NG  +L + ++ + G  N  ++IF+ + ++ ATN YDE + + Q
Sbjct:   365 TKQRKYTKLRRQFFEQNGGGMLIQRLSGA-GLSNIDFKIFTEEGMKEATNGYDESRILGQ 423

Query:    82 DSTYKLYKGFWQER-LISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETP 140
                  +YKG   +  ++++ K   + S    +F I+ ++  +Q++H++++K++GCCLET 
Sbjct:   424 GGQGTVYKGILPDNTIVAIKKARLADSRQVDQF-IHEVLVLSQINHRNVVKILGCCLETE 482

Query:   141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLL-KHRLKVAMGIAHALAYLHVGFPRPIVFG 199
             +P+LV+E+    TL D + G+    F+  L  +HRL++A+ +A  LAYLH     PI+  
Sbjct:   483 VPLLVYEFITNGTLFDHLHGSI---FDSSLTWEHRLRIAIEVAGTLAYLHSSASIPIIHR 539

Query:   200 NLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLD 259
             ++ +  IL +E   AK+ DF  S  IP  +  + T  + G   Y  PEY   G+ NEK D
Sbjct:   540 DIKTANILLDENLTAKVADFGASKLIPMDKEQLTTMVQ-GTLGYLDPEYYTTGLLNEKSD 598

Query:   260 VYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTET 319
             VY+F  VL+ELL+GQ      R   S +HL+ Y  +  + NR  EI D  ++ + +  E 
Sbjct:   599 VYSFGVVLMELLSGQKALCFERPQAS-KHLVSYFVSATEENRLHEIIDDQVLNEDNLKE- 656

Query:   320 EHQFQACARLTLEC 333
                 Q  AR+  EC
Sbjct:   657 ---IQEAARIAAEC 667

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_XIII000087 hypothetical protein (344 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	338
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	1e-18
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	2e-17
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	3e-17
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	3e-16
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	3e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-14
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	5e-11
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	4e-09
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	1e-08
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	1e-08
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	2e-08
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	2e-08
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	4e-08
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	8e-08
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	2e-07
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	2e-07
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	2e-07
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	3e-07
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	1e-06
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	3e-06
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	4e-06
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	9e-06
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	2e-05
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	3e-05
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	3e-05
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	3e-05
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	4e-05
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	5e-05
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	6e-05
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	8e-05
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	8e-05
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	1e-04
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	1e-04
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	1e-04
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	1e-04
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	2e-04
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	2e-04
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	4e-04
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	4e-04
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	5e-04
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	6e-04
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	6e-04
cd05037	259	cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) dom	6e-04
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	6e-04
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	7e-04
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	7e-04
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	8e-04
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	9e-04
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	0.001
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	0.001
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	0.001
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	0.002
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	0.002
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	0.002
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	0.002
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	0.002
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	0.003
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	0.003
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	0.003
cd05062	277	cd05062, PTKc_IGF-1R, Catalytic domain of the Prot	0.003
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	0.003
cd05077	262	cd05077, PTK_Jak1_rpt1, Pseudokinase (repeat 1) do	0.004
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	0.004
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	0.004

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 83.7 bits (208), Expect = 1e-18
 Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 40/202 (19%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
           K +K+ ++ +  + F +E   S+MK                     ++ H +I++L+G C
Sbjct: 34  KTLKEGASEEEREEFLEE--ASIMK---------------------KLSHPNIVRLLGVC 70

Query: 137 LETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPI 196
            +     +V EY     L D +    + H E L LK  L++A+ IA  + YL     +  
Sbjct: 71  TQGEPLYIVTEYMPGGDLLDFL----RKHGEKLTLKDLLQMALQIAKGMEYLE---SKNF 123

Query: 197 VFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA-----WTYSAPEYKRG 251
           V  +L +   L  E  V K+ DF  S  I E +     R R G      W   APE  + 
Sbjct: 124 VHRDLAARNCLVTENLVVKISDFGLSRDIYEDDY---YRKRGGGKLPIKWM--APESLKD 178

Query: 252 GVFNEKLDVYTFSTVLLELLTG 273
           G F  K DV++F  +L E+ T 
Sbjct: 179 GKFTSKSDVWSFGVLLWEIFTL 200

Length = 258

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 79.6 bits (197), Expect = 2e-17
 Identities = 50/210 (23%), Positives = 90/210 (42%), Gaps = 43/210 (20%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
           K IK++ +  L +   +E  I ++K                     +++H +I+KL G  
Sbjct: 24  KIIKKEDSSSLLEELLRE--IEILK---------------------KLNHPNIVKLYGVF 60

Query: 137 LETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPI 196
            +     LV EY E  +L+D +    + +   L     L++ + I   L YLH      I
Sbjct: 61  EDENHLYLVMEYCEGGSLKDLL----KENEGKLSEDEILRILLQILEGLEYLHS---NGI 113

Query: 197 VFGNL----ISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPE-YKRG 251
           +  +L    I   +L ++    KL DF  S  +   ++  + ++  G   Y APE     
Sbjct: 114 IHRDLKPENI---LLDSDNGKVKLADFGLSKLLTSDKS--LLKTIVGTPAYMAPEVLLGK 168

Query: 252 GVFNEKLDVYTFSTVLLELLTGQSTRDLLR 281
           G ++EK D+++   +L EL      +DL+R
Sbjct: 169 GYYSEKSDIWSLGVILYEL---PELKDLIR 195

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 79.9 bits (198), Expect = 3e-17
 Identities = 49/175 (28%), Positives = 75/175 (42%), Gaps = 24/175 (13%)

Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEY----TTLRDRIFGAPQPHFEPLLLKHRLKVA 178
           ++ H ++++L+G C E     LV EY E       LR      P P    L LK  L  A
Sbjct: 52  KLGHPNVVRLLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFA 111

Query: 179 MGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRS-- 236
           + IA  + YL     +  V  +L +   L  E+ V K+ DF  S  + + + +       
Sbjct: 112 IQIAKGMEYLA---SKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGK 168

Query: 237 ---RFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-------GQSTRDLLR 281
              R   W   APE  + G+F  K DV++F  +L E+ T       G S  ++L 
Sbjct: 169 LPIR---WM--APESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSNEEVLE 218

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 77.2 bits (191), Expect = 3e-16
 Identities = 54/221 (24%), Positives = 94/221 (42%), Gaps = 38/221 (17%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
           K +K+D++ +  + F +E    +M+                     ++DH +++KL+G C
Sbjct: 34  KTLKEDASEQQIEEFLRE--ARIMR---------------------KLDHPNVVKLLGVC 70

Query: 137 LETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPI 196
            E     +V EY E   L   +    + +   L L   L  A+ IA  + YL     +  
Sbjct: 71  TEEEPLYIVMEYMEGGDLLSYL----RKNRPKLSLSDLLSFALQIARGMEYLE---SKNF 123

Query: 197 VFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG-AWTYSAPEYKRGGVFN 255
           +  +L +   L  E  V K+ DF  S  + + + +     +    W   APE  + G F 
Sbjct: 124 IHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYRKRGGKLPIRWM--APESLKEGKFT 181

Query: 256 EKLDVYTFSTVLLELLT-GQSTRDLLRTHGSVRHLIEYLKN 295
            K DV++F  +L E+ T G+     +    S   ++EYLKN
Sbjct: 182 SKSDVWSFGVLLWEIFTLGEQPYPGM----SNEEVLEYLKN 218

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 74.1 bits (183), Expect = 3e-15
 Identities = 49/176 (27%), Positives = 80/176 (45%), Gaps = 14/176 (7%)

Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
            ++DH +I+KL+G C E    ++V EY     L D +    +P    L L   L  A+ I
Sbjct: 56  RKLDHPNIVKLLGVCTEEEPLMIVMEYMPGGDLLDYL-RKNRPKE--LSLSDLLSFALQI 112

Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG-A 240
           A  + YL     +  +  +L +   L  E  V K+ DF  S  + + + + +   +    
Sbjct: 113 ARGMEYLE---SKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKVKGGKLPIR 169

Query: 241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRTHGSVRHLIEYLKN 295
           W   APE  + G F  K DV++F  +L E+ T G+     +    S   ++EYLK 
Sbjct: 170 WM--APESLKEGKFTSKSDVWSFGVLLWEIFTLGEEPYPGM----SNAEVLEYLKK 219

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 74.1 bits (182), Expect = 2e-14
 Identities = 65/228 (28%), Positives = 98/228 (42%), Gaps = 34/228 (14%)

Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIA 182
           ++ H +I+KLIG C       L+ EY E   L + +          L  + R K+A+GIA
Sbjct: 739 KLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRN--------LSWERRRKIAIGIA 790

Query: 183 HALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWT 242
            AL +LH      +V GNL    I+ + ++   L      +S+P           F +  
Sbjct: 791 KALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHL-----RLSLPG--LLCTDTKCFISSA 843

Query: 243 YSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL-LRTHGSVRHLIEYLKNYLQNNR 301
           Y APE +      EK D+Y F  +L+ELLTG+S  D     HGS   ++E+ +    +  
Sbjct: 844 YVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVHGS---IVEWARYCYSDCH 900

Query: 302 FTEIADPIIVQDLS---------------CTETEHQFQACARLTLECL 334
                DP I  D+S               CT T+   + CA   L+ L
Sbjct: 901 LDMWIDPSIRGDVSVNQNEIVEVMNLALHCTATDPTARPCANDVLKTL 948

Length = 968

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 62.4 bits (152), Expect = 5e-11
 Identities = 49/187 (26%), Positives = 80/187 (42%), Gaps = 23/187 (12%)

Query: 124 MDHKHILKLIGCCLET--PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           +DH++I+K  G C +       L+ EY    +LRD +    Q H + + LK  L  +  I
Sbjct: 63  LDHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYL----QRHRDQINLKRLLLFSSQI 118

Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRS--RFG 239
              + YL     +  +  +L +  IL   E++ K+ DF  +  +PE + +   +      
Sbjct: 119 CKGMDYLG---SQRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESP 175

Query: 240 AWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT---------GQSTRDLLRTHGS--VRH 288
            + Y APE  R   F+   DV++F   L EL T          +  R +    G   V  
Sbjct: 176 IFWY-APECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTR 234

Query: 289 LIEYLKN 295
           L+E LK 
Sbjct: 235 LLELLKE 241

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 56.1 bits (136), Expect = 4e-09
 Identities = 41/179 (22%), Positives = 70/179 (39%), Gaps = 15/179 (8%)

Query: 97  ISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRD 156
           I V+K          +  IN I    +  H +I+K  G  L+     +V E+    +L+D
Sbjct: 30  IKVIKLESKEKK---EKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCSGGSLKD 86

Query: 157 RIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKL 216
            +    Q   E  +      V   +   L YLH      I+  ++ +  IL   +   KL
Sbjct: 87  LLKSTNQTLTESQIAY----VCKELLKGLEYLH---SNGIIHRDIKAANILLTSDGEVKL 139

Query: 217 FDFSESISIPEGETHIITRSRF-GAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
            DF  S  +    +    R+   G   + APE   G  ++ K D+++     +EL  G+
Sbjct: 140 IDFGLSAQL----SDTKARNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGK 194

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 12/152 (7%)

Query: 124 MDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAH 183
           +DH+++++L G  L  P+ ++V E     +L DR+    +      L+      A+ IA+
Sbjct: 53  LDHENLIRLYGVVLTHPL-MMVTELAPLGSLLDRL---RKDALGHFLISTLCDYAVQIAN 108

Query: 184 ALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG---A 240
            + YL     +  +  +L +  IL   ++  K+ DF    ++P+ E H +         A
Sbjct: 109 GMRYLES---KRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFA 165

Query: 241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           W   APE  R   F+   DV+ F   L E+ T
Sbjct: 166 WC--APESLRTRTFSHASDVWMFGVTLWEMFT 195

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 48/193 (24%), Positives = 77/193 (39%), Gaps = 18/193 (9%)

Query: 88  YKGFWQ-ERLISVMKY--NESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL 144
           YK   +    I  +K     S      + +   I    ++ H +I++LI    +     L
Sbjct: 16  YKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNIVRLIDAFEDKDHLYL 75

Query: 145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISL 204
           V EY E   L D +  +          K   K+A+ I   L YLH      I+  +L   
Sbjct: 76  VMEYCEGGDLFDYL--SRGGPLSEDEAK---KIALQILRGLEYLHS---NGIIHRDLKPE 127

Query: 205 CILFNEENVAKLFDF--SESISIPEGETHIITRSRFGAWTYSAPE-YKRGGVFNEKLDVY 261
            IL +E  V K+ DF  ++ +            + +    Y APE    G  +  K+DV+
Sbjct: 128 NILLDENGVVKIADFGLAKKLLKSSSSLTTFVGTPW----YMAPEVLLGGNGYGPKVDVW 183

Query: 262 TFSTVLLELLTGQ 274
           +   +L ELLTG+
Sbjct: 184 SLGVILYELLTGK 196

Length = 260

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 14/156 (8%)

Query: 123 QMDHKHILKLIGCCL-ETPIPILVF-EYGEYTTLRDRI--FGAPQPHFEPLLLKHRLKVA 178
            + H +I++  G    E    + +F EY    +L   +  FG         +++   +  
Sbjct: 55  SLQHPNIVRYYGSERDEEKNTLNIFLEYVSGGSLSSLLKKFGK----LPEPVIRKYTR-- 108

Query: 179 MGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRF 238
             I   LAYLH      IV  ++    IL + + V KL DF  +  + + ET   T S  
Sbjct: 109 -QILEGLAYLHS---NGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVR 164

Query: 239 GAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
           G   + APE  RG  +    D+++    ++E+ TG+
Sbjct: 165 GTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGK 200

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 42/161 (26%), Positives = 66/161 (40%), Gaps = 14/161 (8%)

Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRD----------RIFGAPQPHFEPLLL 171
               H++I+K  G C E   PI+VFEY E+  L             +     P  E L L
Sbjct: 63  TNFQHENIVKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGE-LTL 121

Query: 172 KHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH 231
              L++A+ IA  + YL     +  V  +L +   L   + V K+ DF  S  +   + +
Sbjct: 122 SQLLQIAVQIASGMVYLAS---QHFVHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTDYY 178

Query: 232 IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            +         +  PE      F  + DV++F  VL E+ T
Sbjct: 179 RVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFT 219

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 53.3 bits (129), Expect = 4e-08
 Identities = 48/204 (23%), Positives = 76/204 (37%), Gaps = 44/204 (21%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
           K IK+    K  +   +E  I ++K                     ++ H +I++L    
Sbjct: 30  KVIKKKKIKKDRERILRE--IKILK---------------------KLKHPNIVRLYDVF 66

Query: 137 LETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPI 196
            +     LV EY E   L D +    +        +        I  AL YLH    + I
Sbjct: 67  EDEDKLYLVMEYCEGGDLFDLL--KKRGRLSEDEARF---YLRQILSALEYLH---SKGI 118

Query: 197 VF-----GNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRG 251
           V       N     IL +E+   KL DF  +  +  GE      +  G   Y APE   G
Sbjct: 119 VHRDLKPEN-----ILLDEDGHVKLADFGLARQLDPGEK---LTTFVGTPEYMAPEVLLG 170

Query: 252 GVFNEKLDVYTFSTVLLELLTGQS 275
             + + +D+++   +L ELLTG+ 
Sbjct: 171 KGYGKAVDIWSLGVILYELLTGKP 194

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 52.6 bits (126), Expect = 8e-08
 Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 12/152 (7%)

Query: 124 MDHKHILKLIGCCLET--PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           + H++I+K  GCC E       L+ EY    +LRD +   P+     L L   L  A  I
Sbjct: 63  LYHENIVKYKGCCSEQGGKGLQLIMEYVPLGSLRDYL---PK---HKLNLAQLLLFAQQI 116

Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAW 241
              +AYLH    +  +  +L +  +L + + + K+ DF  + ++PEG  +   R    + 
Sbjct: 117 CEGMAYLH---SQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSP 173

Query: 242 TY-SAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            +  A E  +   F+   DV++F   L ELLT
Sbjct: 174 VFWYAVECLKENKFSYASDVWSFGVTLYELLT 205

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 19/152 (12%)

Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIA 182
            + H ++++L+G  L+     +V EY    +L D +    +       L  +L  A+ + 
Sbjct: 56  TLRHPNLVQLLGVVLQGNPLYIVTEYMAKGSLVDYLRSRGRAVIT---LAQQLGFALDVC 112

Query: 183 HALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDF----SESISIPEGETHIITRSRF 238
             + YL     +  V  +L +  +L +E+ VAK+ DF      S     G+  +      
Sbjct: 113 EGMEYLE---EKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQDSGKLPV------ 163

Query: 239 GAWTYSAPEYKRGGVFNEKLDVYTFSTVLLEL 270
             WT  APE  R   F+ K DV++F  +L E+
Sbjct: 164 -KWT--APEALREKKFSTKSDVWSFGILLWEI 192

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 39/170 (22%), Positives = 73/170 (42%), Gaps = 24/170 (14%)

Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLR-----DRIFGAP--------------Q 163
           Q++H H++KL G C +    +L+ EY +Y +LR      R  G                 
Sbjct: 59  QVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDN 118

Query: 164 PHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI 223
           P    L +   +  A  I+  + YL       +V  +L +  +L  E    K+ DF  S 
Sbjct: 119 PDERALTMGDLISFAWQISRGMQYLA---EMKLVHRDLAARNVLVAEGRKMKISDFGLSR 175

Query: 224 SIPEGETHII-TRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            + E ++++  ++ R     + A E     ++  + DV++F  +L E++T
Sbjct: 176 DVYEEDSYVKRSKGRIPV-KWMAIESLFDHIYTTQSDVWSFGVLLWEIVT 224

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 14/156 (8%)

Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRI---FGAPQPHFEPLLLKHRLKVA 178
           A++D  +I++     L+     +V EY E   L   +    G P P  E  + +  +++ 
Sbjct: 54  AKLDSSYIIRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLP--EDQVWRFFIQIL 111

Query: 179 MGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRF 238
           +G    LA+LH    + I+  ++ SL +  +  +  K+ D   +  +   +      +  
Sbjct: 112 LG----LAHLH---SKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLL--SDNTNFANTIV 162

Query: 239 GAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
           G   Y +PE      +NEK DV+    VL E  TG+
Sbjct: 163 GTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGK 198

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 51.3 bits (121), Expect = 3e-07
 Identities = 40/179 (22%), Positives = 67/179 (37%), Gaps = 13/179 (7%)

Query: 125 DHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHA 184
              +I+KL     +     LV EY +  +L D +         PL     L +   I  A
Sbjct: 56  HPPNIVKLYDFFQDEGSLYLVMEYVDGGSLEDLL--KKIGRKGPLSESEALFILAQILSA 113

Query: 185 LAYLHVGFPRPIVFGNLISLCILFNEE-NVAKLFDFSESISIPEGETHIITRSRF----G 239
           L YLH    + I+  ++    IL + +  V KL DF  +  +P+  +     +      G
Sbjct: 114 LEYLH---SKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVG 170

Query: 240 AWTYSAPEYKRGGVFNE---KLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKN 295
              Y APE   G          D+++    L ELLTG    +  +   +    ++ +  
Sbjct: 171 TPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILE 229

Length = 384

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 46/155 (29%), Positives = 71/155 (45%), Gaps = 16/155 (10%)

Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQ-PHFEPLLLKHRLKVAMG 180
           AQ+DH  I++LIG C   P+ +LV E      L   +    + P  +   L H  +VAMG
Sbjct: 51  AQLDHPCIVRLIGVCKGEPL-MLVMELAPLGPLLKYLKKRREIPVSDLKELAH--QVAMG 107

Query: 181 IAHALAYLH-VGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG 239
               +AYL    F    V  +L +  +L    + AK+ DF  S ++  G  +    +  G
Sbjct: 108 ----MAYLESKHF----VHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDY-YRATTAG 158

Query: 240 AW--TYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            W   + APE    G F+ K DV+++   L E  +
Sbjct: 159 RWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFS 193

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 47/164 (28%), Positives = 70/164 (42%), Gaps = 21/164 (12%)

Query: 122 AQMDHKHILKLI--GCCLETPIPIL--VFEYGEYTTLRDRIFG-APQPHFEPLLLKHRLK 176
           A++ H +I+ L+  G   E P  +L  VFEY    TLR+ +      P  E   L  ++ 
Sbjct: 33  ARLYHPNIVALLDSG---EAPPGLLFAVFEYVPGRTLREVLAADGALPAGETGRLMLQVL 89

Query: 177 VAMGIAHALAYLHVGF-PRPIVFGNLISLCILFNEENVAKLFDFSESISIP---EGETHI 232
            A+  AH    +H    P+ I+                AK+ DF     +P   + +   
Sbjct: 90  DALACAHNQGIVHRDLKPQNIMVSQT-------GVRPHAKVLDFGIGTLLPGVRDADVAT 142

Query: 233 ITRSR--FGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
           +TR+    G  TY APE  RG       D+Y +  + LE LTGQ
Sbjct: 143 LTRTTEVLGTPTYCAPEQLRGEPVTPNSDLYAWGLIFLECLTGQ 186

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 47.3 bits (112), Expect = 4e-06
 Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 16/159 (10%)

Query: 126 HKHILKLIGCCL-ETPIPILVFEYGEYTTLR-----------DRIFGAPQPHFEPLLLKH 173
           HK+I+ L+G C  E P+ ++V EY     LR           D  F   +   E L  K 
Sbjct: 77  HKNIINLLGVCTQEGPLYVIV-EYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKD 135

Query: 174 RLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHII 233
            +  A  +A  + YL     R  +  +L +  +L  E+NV K+ DF  +  + + + +  
Sbjct: 136 LVSCAYQVARGMEYLE---SRRCIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKK 192

Query: 234 TRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           T +      + APE     V+  + DV++F  ++ E+ T
Sbjct: 193 TSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFT 231

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 46.3 bits (110), Expect = 9e-06
 Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 26/164 (15%)

Query: 126 HKHILKLIGCCLETPIPILVFEYGEYTTLRDRI-----------FGAPQPHFEPLLLKHR 174
           HK+I+ L+G C +     +V EY  +  LRD +              P+P  E L  K  
Sbjct: 75  HKNIINLLGVCTQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDL 134

Query: 175 LKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHII- 233
           +  A  +A  + +L     +  +  +L +  +L  E++V K+ DF  +  I     H I 
Sbjct: 135 VSFAYQVARGMEFLA---SKKCIHRDLAARNVLVTEDHVMKIADFGLARDI-----HHID 186

Query: 234 -----TRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
                T  R     + APE     V+  + DV++F  +L E+ T
Sbjct: 187 YYRKTTNGRL-PVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFT 229

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 8/172 (4%)

Query: 107 SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHF 166
           S+   + ++N IV  + + H +I+      ++    ++  EY    TL D+I       F
Sbjct: 39  SEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEYANGGTLYDKIVRQKGQLF 98

Query: 167 EPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP 226
           E  ++   L     I  A++Y+H      I+  ++ +L I   +  + KL DF   IS  
Sbjct: 99  EEEMV---LWYLFQIVSAVSYIH---KAGILHRDIKTLNIFLTKAGLIKLGDFG--ISKI 150

Query: 227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRD 278
            G  + +  +  G   Y +PE  +G  +N K D++    VL ELLT + T D
Sbjct: 151 LGSEYSMAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFD 202

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 17/153 (11%)

Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIA 182
           Q DH HI+KLIG   E P+ I V E      LR  +    Q +   L L   +  +  ++
Sbjct: 63  QFDHPHIVKLIGVITENPVWI-VMELAPLGELRSYL----QVNKYSLDLASLILYSYQLS 117

Query: 183 HALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG-AW 241
            ALAYL     +  V  ++ +  +L +  +  KL DF  S  + +   +  ++ +    W
Sbjct: 118 TALAYLE---SKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYYKASKGKLPIKW 174

Query: 242 TYSAPE---YKRGGVFNEKLDVYTFSTVLLELL 271
              APE   ++R   F    DV+ F   + E+L
Sbjct: 175 M--APESINFRR---FTSASDVWMFGVCMWEIL 202

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 11/201 (5%)

Query: 87  LYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLE-TPIPILV 145
           ++ G+W E+    +K     + S   F I       ++ H  +++L G C E +PI  LV
Sbjct: 20  VWLGYWLEKRKVAIKTIREGAMSEEDF-IEEAQVMMKLSHPKLVQLYGVCTERSPI-CLV 77

Query: 146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLC 205
           FE+ E+  L D +        +  LL   L V  G    +AYL       ++  +L +  
Sbjct: 78  FEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEG----MAYLE---SSNVIHRDLAARN 130

Query: 206 ILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFST 265
            L  E  V K+ DF  +  + + +    T ++F    +S+PE      ++ K DV++F  
Sbjct: 131 CLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPV-KWSSPEVFSFSKYSSKSDVWSFGV 189

Query: 266 VLLELLTGQSTRDLLRTHGSV 286
           ++ E+ +   T    R++  V
Sbjct: 190 LMWEVFSEGKTPYENRSNSEV 210

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 32/151 (21%), Positives = 65/151 (43%), Gaps = 8/151 (5%)

Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           A +DH H+++L+G CL +    L+ +      L D +    + H + +  ++ L   + I
Sbjct: 64  ASVDHPHVVRLLGICL-SSQVQLITQLMPLGCLLDYV----RNHKDNIGSQYLLNWCVQI 118

Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAW 241
           A  ++YL     + +V  +L +  +L       K+ DF  +  +   E            
Sbjct: 119 AKGMSYLE---EKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPI 175

Query: 242 TYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            + A E     ++  K DV+++   + EL+T
Sbjct: 176 KWMALESILHRIYTHKSDVWSYGVTVWELMT 206

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 13/148 (8%)

Query: 128 HILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAY 187
           +I+   G  L      +  E+ +  +L DRI+        P+ ++   K+A+ +   L Y
Sbjct: 64  YIVSFYGAFLNENNICMCMEFMDCGSL-DRIY----KKGGPIPVEILGKIAVAVVEGLTY 118

Query: 188 LHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGE-THIITRSRFGAWTYSAP 246
           L+      I+  ++    IL N     KL DF  S     GE  + I  +  G  TY +P
Sbjct: 119 LY--NVHRIMHRDIKPSNILVNSRGQIKLCDFGVS-----GELINSIADTFVGTSTYMSP 171

Query: 247 EYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
           E  +GG +  K DV++    ++EL  G+
Sbjct: 172 ERIQGGKYTVKSDVWSLGISIIELALGK 199

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 44.2 bits (104), Expect = 5e-05
 Identities = 40/163 (24%), Positives = 65/163 (39%), Gaps = 21/163 (12%)

Query: 124 MDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFE-----------PLLLK 172
           + H+HI++  G C E    ++VFEY  +  L +R   +  P  +            L L 
Sbjct: 64  LQHQHIVRFYGVCTEGRPLLMVFEYMRHGDL-NRFLRSHGPDAKILAGGEDVAPGQLTLG 122

Query: 173 HRLKVAMGIAHALAY---LHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGE 229
             L +A  IA  + Y   LH       V  +L +   L  +  V K+ DF  S  I   +
Sbjct: 123 QMLAIASQIASGMVYLASLH------FVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTD 176

Query: 230 THIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            + +         +  PE      F  + D+++F  VL E+ T
Sbjct: 177 YYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFT 219

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 11/149 (7%)

Query: 126 HKHILKLIGCC-LETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHA 184
           H  +++L   C LE PI I V E  +Y +L + + G        L L   + +A  +A  
Sbjct: 60  HPKLIQLYAVCTLEEPIYI-VTELMKYGSLLEYLQGGAGRA---LKLPQLIDMAAQVASG 115

Query: 185 LAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG-AWTY 243
           +AYL     +  +  +L +  +L  E N+ K+ DF  +  I E        ++F   WT 
Sbjct: 116 MAYLEA---QNYIHRDLAARNVLVGENNICKVADFGLARVIKEDIYEAREGAKFPIKWT- 171

Query: 244 SAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            APE      F+ K DV++F  +L E++T
Sbjct: 172 -APEAALYNRFSIKSDVWSFGILLTEIVT 199

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 17/155 (10%)

Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIA 182
           ++ H ++++L+G C   P   ++ E+  Y  L D +    +     ++L   L +A  I+
Sbjct: 58  EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVL---LYMATQIS 114

Query: 183 HALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA-- 240
            A+ YL     +  +  +L +   L  E ++ K+ DF  S  +  G+T+    +  GA  
Sbjct: 115 SAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYT---AHAGAKF 167

Query: 241 ---WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
              WT  APE      F+ K DV+ F  +L E+ T
Sbjct: 168 PIKWT--APESLAYNKFSIKSDVWAFGVLLWEIAT 200

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 44/174 (25%), Positives = 69/174 (39%), Gaps = 32/174 (18%)

Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEY--------------------TTLRDRIFGA 161
           A+ DH +I+KL+G C       L+FEY  Y                    +T   R  G 
Sbjct: 63  AEFDHPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGL 122

Query: 162 PQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSE 221
                 PL    +L +A  +A  +AYL     R  V  +L +   L  E  V K+ DF  
Sbjct: 123 NPL---PLSCTEQLCIAKQVAAGMAYLS---ERKFVHRDLATRNCLVGENMVVKIADFGL 176

Query: 222 SISIPEGETHIITRSRFGAWTYSAPE---YKRGGVFNEKLDVYTFSTVLLELLT 272
           S +I   + +  + +      +  PE   Y R   +  + DV+ +  VL E+ +
Sbjct: 177 SRNIYSADYYKASENDAIPIRWMPPESIFYNR---YTTESDVWAYGVVLWEIFS 227

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 11/188 (5%)

Query: 93  QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYT 152
           Q++++  +K  +  SD+A K           + H+HI+K  G C+E    I+VFEY ++ 
Sbjct: 33  QDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHG 92

Query: 153 TLR--------DRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISL 204
            L         D +  A       L     L +A  IA  + YL     +  V  +L + 
Sbjct: 93  DLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLA---SQHFVHRDLATR 149

Query: 205 CILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFS 264
             L  E  + K+ DF  S  +   + + +         +  PE      F  + DV++  
Sbjct: 150 NCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLG 209

Query: 265 TVLLELLT 272
            VL E+ T
Sbjct: 210 VVLWEIFT 217

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 54/216 (25%), Positives = 86/216 (39%), Gaps = 27/216 (12%)

Query: 97  ISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY--GEYTTL 154
           +  M Y+   ++   +  I  + +  Q+ H + ++  GC L+     LV EY  G  + L
Sbjct: 51  VKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEYCLGSASDL 110

Query: 155 RDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYL--HVGFPRPIVFGNLISLCILFNEEN 212
                   + H +PL       +  G    LAYL  H    R I  GN     IL  E  
Sbjct: 111 L-------EVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGN-----ILLTEPG 158

Query: 213 VAKLFDF-SESISIPEGETHIITRSRFGAWTYSAPEYKRG---GVFNEKLDVYTFSTVLL 268
             KL DF S S S P         S  G   + APE       G ++ K+DV++     +
Sbjct: 159 QVKLADFGSASKSSP-------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCI 211

Query: 269 ELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTE 304
           EL   +     +    ++ H+ +     LQ+N +T+
Sbjct: 212 ELAERKPPLFNMNAMSALYHIAQNDSPTLQSNEWTD 247

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 21/182 (11%)

Query: 108 DSACKFSINNIVYAAQM-----DHKHILKLIGCCLET-PIPILVFEYGEYTTLR------ 155
           D A    ++++V   +M      HK+I+ L+G C +  P+ +LV EY     LR      
Sbjct: 54  DDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVLV-EYASKGNLREYLRAR 112

Query: 156 -----DRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE 210
                D  F   +   E L  K  +  A  +A  + YL     +  +  +L +  +L  E
Sbjct: 113 RPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLA---SQKCIHRDLAARNVLVTE 169

Query: 211 ENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLEL 270
           +NV K+ DF  +  +   + +  T +      + APE     V+  + DV++F  +L E+
Sbjct: 170 DNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEI 229

Query: 271 LT 272
            T
Sbjct: 230 FT 231

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 38/181 (20%), Positives = 75/181 (41%), Gaps = 19/181 (10%)

Query: 108 DSACKFSINNIVYAAQM-----DHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAP 162
           D A +  ++++V   +M      HK+I+ L+G C +     ++ EY     LR+ +    
Sbjct: 57  DDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARR 116

Query: 163 QPHF-----------EPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE 211
            P             E +  K  +     +A  + YL     +  +  +L +  +L  E 
Sbjct: 117 PPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLA---SQKCIHRDLAARNVLVTEN 173

Query: 212 NVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELL 271
           NV K+ DF  +  +   + +  T +      + APE     V+  + DV++F  ++ E+ 
Sbjct: 174 NVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIF 233

Query: 272 T 272
           T
Sbjct: 234 T 234

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 18/162 (11%)

Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEP--LLLKHRLKVAM 179
           +  +H +I+KL+G CL      ++ E  E   L   +  A    F P  L LK  L + +
Sbjct: 54  SNFNHPNIVKLLGVCLLNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICL 113

Query: 180 GIAHALAYLH-VGF-PRPIVFGNLISLCILFNEENVAKLFDFSESISI-------PEGET 230
            +A    YL  + F  R +   N +     ++ + V K+ DF  +  I        EGE 
Sbjct: 114 DVAKGCVYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEG 173

Query: 231 HIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            +  R       + APE    G F  + DV++F  ++ E+LT
Sbjct: 174 LLPVR-------WMAPESLLDGKFTTQSDVWSFGVLMWEILT 208

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 8/155 (5%)

Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRD-----RIFGAPQPHFEPLLLKHRLKV 177
           + +  H+++L+G        ++V E      L+      R      P   P  L+  +++
Sbjct: 65  EFNCHHVVRLLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQM 124

Query: 178 AMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSR 237
           A  IA  +AYL     +  V  +L +   +  E+   K+ DF  +  I E + +      
Sbjct: 125 AAEIADGMAYLA---AKKFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKG 181

Query: 238 FGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
                + APE  + GVF  K DV++F  VL E+ T
Sbjct: 182 LLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMAT 216

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 18/168 (10%)

Query: 121 AAQM---DHKHILKLIGCCLET------PIPILVFEYGEYTTLRDRIFG---APQPHFEP 168
           AA M   DH +++KLIG C E       P P+++  + ++  L   +        P   P
Sbjct: 52  AACMKDFDHPNVMKLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLP 111

Query: 169 LLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG 228
             L+  LK  + IA  + YL     R  +  +L +   +  E+    + DF  S  I  G
Sbjct: 112 --LQTLLKFMVDIALGMEYLS---NRNFIHRDLAARNCMLREDMTVCVADFGLSKKIYSG 166

Query: 229 ETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQS 275
           + +   R       + A E     V+  K DV+ F   + E+ T GQ+
Sbjct: 167 DYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQT 214

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 27/160 (16%)

Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGE----YTTLRDRIFGAPQPHFEPLLLKHRLKVA 178
           Q DH +I++L G   ++   +++ EY E       LR+         F    L   + + 
Sbjct: 61  QFDHPNIIRLEGVVTKSRPVMIITEYMENGSLDKFLREN-----DGKFTVGQL---VGML 112

Query: 179 MGIAHALAYL-HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRS- 236
            GIA  + YL  + +    V  +L +  IL N   V K+ DF  S  + + E    T+  
Sbjct: 113 RGIASGMKYLSEMNY----VHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTTKGG 168

Query: 237 ----RFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
               R   WT  APE      F    DV++F  V+ E+++
Sbjct: 169 KIPIR---WT--APEAIAYRKFTSASDVWSFGIVMWEVMS 203

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)

Query: 123 QMDHKHILKLIGCCLETPIPILVFEY---GEYTT-LRDRIFGAPQPHFEPLLLKHRLKVA 178
           Q DH +I+KLIG C +     +V E    G++ + LR +         + L  K  +K A
Sbjct: 48  QYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFLSFLRKKK--------DELKTKQLVKFA 99

Query: 179 MGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRF 238
           +  A  +AYL     +  +  +L +   L  E NV K+ DF  S    +G   I + S  
Sbjct: 100 LDAAAGMAYLES---KNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDG---IYSSSGL 153

Query: 239 G----AWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
                 WT  APE    G ++ + DV+++  +L E  +
Sbjct: 154 KQIPIKWT--APEALNYGRYSSESDVWSYGILLWETFS 189

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 40.8 bits (95), Expect = 6e-04
 Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 14/158 (8%)

Query: 126 HKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFE-----------PLLLKHR 174
           HK+I+ L+G C +     ++ EY     LR+ +     P  E            L  K  
Sbjct: 83  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDL 142

Query: 175 LKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIIT 234
           +  A  +A  + YL     +  +  +L +  +L  E+NV K+ DF  +  I   + +  T
Sbjct: 143 VSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKT 199

Query: 235 RSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            +      + APE     ++  + DV++F  +L E+ T
Sbjct: 200 TNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFT 237

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 40.7 bits (95), Expect = 6e-04
 Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 30/159 (18%)

Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTT-------LRDR-IFGAPQPHFEPLLLKHR 174
           ++ HK++++L+G  L   + I++    E  +       LR R             LL+  
Sbjct: 55  KLHHKNLVRLLGVILHNGLYIVM----ELMSKGNLVNFLRTRGRALVSVIQ----LLQFS 106

Query: 175 LKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIIT 234
           L VA G+ +  +       + +V  +L +  IL +E+ VAK+ DF  +     G    + 
Sbjct: 107 LDVAEGMEYLES-------KKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMG----VD 155

Query: 235 RSRFGA-WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            S+    WT  APE  +   F+ K DV+++  +L E+ +
Sbjct: 156 NSKLPVKWT--APEALKHKKFSSKSDVWSYGVLLWEVFS 192

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|173627 cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 48/157 (30%), Positives = 67/157 (42%), Gaps = 23/157 (14%)

Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIA 182
           Q+ HKH++KL G C+     I+V EY ++  L   +          + L  +L VA  +A
Sbjct: 57  QLSHKHLVKLYGVCVRDE-NIMVEEYVKFGPLDVFLHREKN----NVSLHWKLDVAKQLA 111

Query: 183 HALAYLHVGFPRPIVFGNLISLCILF-----NEENV--AKLFDFSESISIPEGETHIITR 235
            AL YL     + +V GN+    IL      NE  V   KL D    I I         R
Sbjct: 112 SALHYLE---DKKLVHGNVCGKNILVARYGLNEGYVPFIKLSD--PGIPITVLSREE--R 164

Query: 236 SRFGAWTYSAPEYKRGGVFNEKL--DVYTFSTVLLEL 270
                W   APE  R G  +  +  D ++F T LLE+
Sbjct: 165 VERIPWI--APECIRNGQASLTIAADKWSFGTTLLEI 199

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 259

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 45/168 (26%), Positives = 64/168 (38%), Gaps = 32/168 (19%)

Query: 124 MDHKHILKLIG---------CCLETPIPI-LVFEY---GE--YTTLRDRIFGAPQPHFEP 168
           M  K +L L G          C +T   +  V EY   G+  +   R   F  P+  F  
Sbjct: 43  MTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNGGDLMFHIQRSGRFDEPRARF-- 100

Query: 169 LLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG 228
                    A  I   L +LH    R I++ +L    +L + E   K+ DF       EG
Sbjct: 101 --------YAAEIVLGLQFLH---ERGIIYRDLKLDNVLLDSEGHIKIADFGMC---KEG 146

Query: 229 ETHIITRSRF-GAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQS 275
               +T S F G   Y APE      +   +D +    +L E+L GQS
Sbjct: 147 ILGGVTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQS 194

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 40.4 bits (94), Expect = 7e-04
 Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 16/154 (10%)

Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFE-PLLLKHRLKVAMGI 181
           ++ H+ +++L     E PI I V EY    +L D + G    +   P L+    ++A G+
Sbjct: 57  KLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGM 115

Query: 182 AHA--LAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG 239
           A+   + Y+H          +L +  IL  E  V K+ DF  +  I + E      ++F 
Sbjct: 116 AYVERMNYVH---------RDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFP 166

Query: 240 -AWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
             WT  APE    G F  K DV++F  +L EL T
Sbjct: 167 IKWT--APEAALYGRFTIKSDVWSFGILLTELTT 198

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 46/152 (30%), Positives = 70/152 (46%), Gaps = 11/152 (7%)

Query: 123 QMDHKHILKLIGCCLET-PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           ++ H  +++L   C E  PI I V EY    +L D    + +     L L   + +A  I
Sbjct: 57  KLRHDKLVQLYAVCSEEEPIYI-VTEYMSKGSLLD-FLKSGEGKK--LRLPQLVDMAAQI 112

Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG-A 240
           A  +AYL     R  +  +L +  IL  E  V K+ DF  +  I + E      ++F   
Sbjct: 113 AEGMAYLE---SRNYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTAREGAKFPIK 169

Query: 241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           WT  APE    G F  K DV++F  +L E++T
Sbjct: 170 WT--APEAANYGRFTIKSDVWSFGILLTEIVT 199

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 40.4 bits (94), Expect = 8e-04
 Identities = 53/216 (24%), Positives = 85/216 (39%), Gaps = 27/216 (12%)

Query: 97  ISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY--GEYTTL 154
           I  M Y+   S+   +  I  + +  ++ H + ++  GC L      LV EY  G  + L
Sbjct: 45  IKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDL 104

Query: 155 RDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVG--FPRPIVFGNLISLCILFNEEN 212
                   + H +PL       V  G    LAYLH      R +  GN     IL +E  
Sbjct: 105 L-------EVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGN-----ILLSEPG 152

Query: 213 VAKLFDF-SESISIPEGETHIITRSRFGAWTYSAPEYKRG---GVFNEKLDVYTFSTVLL 268
           + KL DF S SI  P            G   + APE       G ++ K+DV++     +
Sbjct: 153 LVKLGDFGSASIMAP-------ANXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCI 205

Query: 269 ELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTE 304
           EL   +     +    ++ H+ +     LQ+  ++E
Sbjct: 206 ELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSE 241

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 39.9 bits (93), Expect = 9e-04
 Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 22/160 (13%)

Query: 124 MDHKHILKLIGCCLETPIPILVFEY---GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMG 180
           + H +I++ +G CL+     +  E+   G  +++ +R FG   P  EP+  K+  ++  G
Sbjct: 59  LKHVNIVQYLGTCLDDNTISIFMEFVPGGSISSILNR-FG---PLPEPVFCKYTKQILDG 114

Query: 181 IAHALAYLHVG--FPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHI----IT 234
           +A    YLH      R I   N     ++     + KL DF  +  +     H     + 
Sbjct: 115 VA----YLHNNCVVHRDIKGNN-----VMLMPNGIIKLIDFGCARRLAWVGLHGTHSNML 165

Query: 235 RSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
           +S  G   + APE      +  K D+++    + E+ TG+
Sbjct: 166 KSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGK 205

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 16/151 (10%)

Query: 123 QMDHKHILKLIGCCLETPIPI-LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           Q+ H ++++L+G  +E    + +V EY    +L D +    +       L   LK ++ +
Sbjct: 55  QLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCL---LKFSLDV 111

Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDF--SESISIPEGETHIITRSRFG 239
             A+ YL        V  +L +  +L +E+NVAK+ DF  ++  S  +    +  +    
Sbjct: 112 CEAMEYLEAN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVK---- 164

Query: 240 AWTYSAPEYKRGGVFNEKLDVYTFSTVLLEL 270
            WT  APE  R   F+ K DV++F  +L E+
Sbjct: 165 -WT--APEALREKKFSTKSDVWSFGILLWEI 192

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 44/195 (22%), Positives = 82/195 (42%), Gaps = 22/195 (11%)

Query: 123 QMDHKHILKLIGCCLET------PIPILVFEYGEYTTLRDRIFGA---PQPHFEPLLLKH 173
           + DH ++++LIG CL+T      P P+++  + ++  L   +  +     P + P   + 
Sbjct: 56  EFDHPNVMRLIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLP--TQM 113

Query: 174 RLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHII 233
            +K    IA  + YL     +  +  +L +   + NE     + DF  S  I  G+ +  
Sbjct: 114 LVKFMTDIASGMEYLS---SKSFIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYRQ 170

Query: 234 TRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRTHGSVRHLIEY 292
            R       + A E     V+  K DV++F   + E+ T GQ+    +        + +Y
Sbjct: 171 GRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVEN----SEIYDY 226

Query: 293 LKNYLQNNRFTEIAD 307
           L+   Q NR  +  D
Sbjct: 227 LR---QGNRLKQPPD 238

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 10/151 (6%)

Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIA 182
           Q+ H  +++L     + PI I + EY E  +L D +     P    L +   + +A  IA
Sbjct: 57  QLQHPRLVRLYAVVTQEPIYI-ITEYMENGSLVDFL---KTPEGIKLTINKLIDMAAQIA 112

Query: 183 HALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG-AW 241
             +A++     +  +  +L +  IL +E    K+ DF  +  I + E      ++F   W
Sbjct: 113 EGMAFIER---KNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTAREGAKFPIKW 169

Query: 242 TYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           T  APE    G F  K DV++F  +L E++T
Sbjct: 170 T--APEAINYGTFTIKSDVWSFGILLTEIVT 198

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 39.4 bits (93), Expect = 0.002
 Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 24/162 (14%)

Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRI--FGAPQPHF-EPLLLKHRLKVA 178
            +++H +I+K      E     +V EY +   L  +I         F E  +L   +++ 
Sbjct: 54  KKLNHPNIIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLC 113

Query: 179 MGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRF 238
           +    AL YLH    R I+  ++    I      + KL DF        G + +++ +  
Sbjct: 114 L----ALKYLH---SRKILHRDIKPQNIFLTSNGLVKLGDF--------GISKVLSSTVD 158

Query: 239 GAWT------YSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
            A T      Y +PE  +   +N K D+++   VL EL T +
Sbjct: 159 LAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLK 200

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 15/158 (9%)

Query: 123 QMDHKHILKLIGCCLET-PIPILVFEY---GEYTTLRDRIFGAPQPHFEPLLLKHRLKVA 178
           Q DH +I+KLIG C++  PI I V E    G   T   +           L +K  L+++
Sbjct: 48  QYDHPNIVKLIGVCVQKQPIYI-VMELVPGGSLLTFLRKKKNR-------LTVKKLLQMS 99

Query: 179 MGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRF 238
           +  A  + YL     +  +  +L +   L  E NV K+ DF  S     G   +    + 
Sbjct: 100 LDAAAGMEYLE---SKNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQ 156

Query: 239 GAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQST 276
               ++APE    G +  + DV+++  +L E  +   T
Sbjct: 157 IPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDT 194

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 30/163 (18%)

Query: 123 QMDHKHILKLIGCCLETPIP--ILVFEYGEY--TTLRDRIFGAPQPHFEPLLLKHRLKVA 178
           ++ H +I++L             +VFEY ++  T L D     P+  F    +K  +K  
Sbjct: 54  KLRHPNIVRLKEIVTSKGKGSIYMVFEYMDHDLTGLLDS----PEVKFTESQIKCYMK-- 107

Query: 179 MGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRF 238
             +   L YLH      I+  ++    IL N + V KL DF        G     T+   
Sbjct: 108 -QLLEGLQYLHS---NGILHRDIKGSNILINNDGVLKLADF--------GLARPYTKRNS 155

Query: 239 GAWT-------YSAPEYKRGG-VFNEKLDVYTFSTVLLELLTG 273
             +T       Y  PE   G   +  ++D+++   +L EL  G
Sbjct: 156 ADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLG 198

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 14/160 (8%)

Query: 124 MDHKHILKLIGCCLETPIPILVFEYGEYTTLRD-----------RIFGAPQPHFEPLLLK 172
           + H+HI+K  G C +    I+VFEY ++  L              + G P+     L L 
Sbjct: 64  LQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLS 123

Query: 173 HRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHI 232
             L +A  IA  + YL     +  V  +L +   L     + K+ DF  S  +   + + 
Sbjct: 124 QMLHIASQIASGMVYLA---SQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYR 180

Query: 233 ITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           +         +  PE      F  + DV++F  +L E+ T
Sbjct: 181 VGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFT 220

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 47/200 (23%), Positives = 89/200 (44%), Gaps = 34/200 (17%)

Query: 86  KLYKGFWQERL---ISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIG-CCLETPI 141
           ++++G W+ R+   I ++K ++       +  +  +    ++ HKH++ L   C +  P+
Sbjct: 21  EVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQAL---KRLRHKHLISLFAVCSVGEPV 77

Query: 142 PIL--VFEYGEYTT-LRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVF 198
            I+  + E G     LR        P  + L +   + +A  +A  +AYL     +  + 
Sbjct: 78  YIITELMEKGSLLAFLRS-------PEGQVLPVASLIDMACQVAEGMAYLE---EQNSIH 127

Query: 199 GNLISLCILFNEENVAKLFDF------SESISIPEGETHIITRSRFGAWTYSAPEYKRGG 252
            +L +  IL  E+ V K+ DF       E + +   +  I  +     WT  APE    G
Sbjct: 128 RDLAARNILVGEDLVCKVADFGLARLIKEDVYLSS-DKKIPYK-----WT--APEAASHG 179

Query: 253 VFNEKLDVYTFSTVLLELLT 272
            F+ K DV++F  +L E+ T
Sbjct: 180 TFSTKSDVWSFGILLYEMFT 199

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 55/187 (29%), Positives = 78/187 (41%), Gaps = 22/187 (11%)

Query: 124 MDHKHILKLIGCCLETPIP--ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           + H +I+K  G C         LV EY  Y +LRD +    Q H E L  +  L  A  I
Sbjct: 62  LQHDNIVKYKGVCYSAGRRNLRLVMEYLPYGSLRDYL----QKHRERLDHRKLLLYASQI 117

Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG-ETHIITRSRFGA 240
              + YL     +  V  +L +  IL   EN  K+ DF  +  +P+  E + +       
Sbjct: 118 CKGMEYLGS---KRYVHRDLATRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGESP 174

Query: 241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQS-----TRDLLRTHGS-------VRH 288
             + APE      F+   DV++F  VL EL T          + +R  G+       V H
Sbjct: 175 IFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPAEFMRMMGNDKQGQMIVYH 234

Query: 289 LIEYLKN 295
           LIE LKN
Sbjct: 235 LIELLKN 241

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 33/156 (21%), Positives = 70/156 (44%), Gaps = 10/156 (6%)

Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIF----GAPQPHFEPLLLKHRLKV 177
            ++ HK++++L+G C E     ++ EY +   L+  +        +    PL  K ++ +
Sbjct: 63  RKLSHKNVVRLLGLCREAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVAL 122

Query: 178 AMGIAHALAYLHVGFPRPIVFGNLISL-CILFNEENVAKLFDFSESISIPEGETHIITRS 236
              IA  + +L        V  +L +  C++ + +   K+   S S  +   E + + R+
Sbjct: 123 CTQIALGMDHLSNA---RFVHRDLAARNCLVSS-QREVKVSLLSLSKDVYNSEYYKL-RN 177

Query: 237 RFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
                 + APE  +   F+ K DV++F  ++ E+ T
Sbjct: 178 ALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFT 213

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 12/153 (7%)

Query: 123 QMDHKHILKLIGCCLET-PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           ++ H ++++L G C +  PI I V EY     L + +    +     L  +  L +   +
Sbjct: 55  KLSHPNLVQLYGVCTKQRPIFI-VTEYMANGCLLNYL----RERKGKLGTEWLLDMCSDV 109

Query: 182 AHALAYLH-VGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA 240
             A+ YL   GF    +  +L +   L  E+NV K+ DF  +  + + +      ++F  
Sbjct: 110 CEAMEYLESNGF----IHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGTKFPV 165

Query: 241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTG 273
             ++ PE      F+ K DV++F  ++ E+ + 
Sbjct: 166 -KWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSE 197

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

 Score = 38.5 bits (89), Expect = 0.003
 Identities = 45/200 (22%), Positives = 81/200 (40%), Gaps = 15/200 (7%)

Query: 94  ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTT 153
           E  +++   NE+ S       +N      + +  H+++L+G   +    +++ E      
Sbjct: 36  ETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGD 95

Query: 154 LRD-----RIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILF 208
           L+      R      P   P  LK  +++A  IA  +AYL+       V  +L +   + 
Sbjct: 96  LKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMV 152

Query: 209 NEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLL 268
            E+   K+ DF  +  I E + +           + +PE  + GVF    DV++F  VL 
Sbjct: 153 AEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLW 212

Query: 269 ELLT-------GQSTRDLLR 281
           E+ T       G S   +LR
Sbjct: 213 EIATLAEQPYQGMSNEQVLR 232

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 36/188 (19%), Positives = 79/188 (42%), Gaps = 25/188 (13%)

Query: 97  ISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY---GEYTT 153
           ++ ++   S  +   +     I   A+++H HI++++G   E     L  E+   G  + 
Sbjct: 33  VTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNLFVEWMAGGSVSH 92

Query: 154 LRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE-N 212
           L  + +GA +   E +++ +  ++  G    L+YLH      I+  ++    +L +    
Sbjct: 93  LLSK-YGAFK---EAVIINYTEQLLRG----LSYLH---ENQIIHRDVKGANLLIDSTGQ 141

Query: 213 VAKLFDFSESISIPEGETHIITRS------RFGAWTYSAPEYKRGGVFNEKLDVYTFSTV 266
             ++ DF  +  +        T +        G   + APE  RG  +    DV++   V
Sbjct: 142 RLRIADFGAAARL----AAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCV 197

Query: 267 LLELLTGQ 274
           ++E+ T +
Sbjct: 198 IIEMATAK 205

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|173643 cd05077, PTK_Jak1_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 38.0 bits (88), Expect = 0.004
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 7/91 (7%)

Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIA 182
           Q+ HKHI+ L G C+     I+V E+ E+  L   +F   +   + L    + KVA  +A
Sbjct: 60  QVSHKHIVLLYGVCVRDVENIMVEEFVEFGPL--DLFMHRKS--DVLTTPWKFKVAKQLA 115

Query: 183 HALAYLHVGFPRPIVFGNLISLCILFNEENV 213
            AL+YL     + +V GN+ +  IL   E +
Sbjct: 116 SALSYLE---DKDLVHGNVCTKNILLAREGI 143

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 262

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 18/158 (11%)

Query: 123 QMDHKHILKLIGCCLETPIPILVFEY---GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAM 179
           ++ H++I++ +G  L+     +  EY   G    L +  +GA    FE  L+++ ++   
Sbjct: 62  ELQHENIVQYLGSSLDADHLNIFLEYVPGGSVAALLNN-YGA----FEETLVRNFVR--- 113

Query: 180 GIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITR---- 235
            I   L YLH    R I+  ++    IL + +   K+ DF  S  +        T     
Sbjct: 114 QILKGLNYLHN---RGIIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARP 170

Query: 236 SRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTG 273
           S  G+  + APE  +   +  K D+++   +++E+LTG
Sbjct: 171 SLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTG 208

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 38.1 bits (88), Expect = 0.004
 Identities = 54/216 (25%), Positives = 86/216 (39%), Gaps = 27/216 (12%)

Query: 97  ISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY--GEYTTL 154
           I  M Y+   S+   +  I  + +  ++ H + ++  GC L      LV EY  G  + L
Sbjct: 55  IKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEYCLGSASDL 114

Query: 155 RDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVG--FPRPIVFGNLISLCILFNEEN 212
                   + H +PL       +  G    LAYLH      R I  GN     IL  E  
Sbjct: 115 L-------EVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGN-----ILLTEPG 162

Query: 213 VAKLFDF-SESISIPEGETHIITRSRFGAWTYSAPEYKRG---GVFNEKLDVYTFSTVLL 268
             KL DF S SI+ P         S  G   + APE       G ++ K+DV++     +
Sbjct: 163 QVKLADFGSASIASP-------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCI 215

Query: 269 ELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTE 304
           EL   +     +    ++ H+ +     LQ+N +++
Sbjct: 216 ELAERKPPLFNMNAMSALYHIAQNESPTLQSNEWSD 251

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	338
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	100.0
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
KOG0610	459	consensus Putative serine/threonine protein kinase	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
KOG2052	513	consensus Activin A type IB receptor, serine/threo	100.0
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	100.0
KOG0589	426	consensus Serine/threonine protein kinase [General	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	100.0
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	100.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	100.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	100.0
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	100.0
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	100.0
KOG0577	948	consensus Serine/threonine protein kinase [Signal	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	100.0
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	100.0
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	100.0
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
KOG4717	864	consensus Serine/threonine protein kinase [Signal	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	100.0
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	100.0
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	100.0
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	100.0
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	100.0
KOG0596	677	consensus Dual specificity; serine/threonine and t	100.0
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	100.0
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
KOG1989	738	consensus ARK protein kinase family [Signal transd	100.0
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	100.0
PHA03207	392	serine/threonine kinase US3; Provisional	100.0
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	100.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	100.0
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	100.0
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	100.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	100.0
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	100.0
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	100.0
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	100.0
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	100.0
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	100.0
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	100.0
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	100.0
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	100.0
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	100.0
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	100.0
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	100.0
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	100.0
PHA03209	357	serine/threonine kinase US3; Provisional	100.0
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	100.0
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	100.0
PHA03211	461	serine/threonine kinase US3; Provisional	100.0
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	100.0
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	100.0
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	100.0
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	100.0
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	100.0
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	100.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	100.0
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	100.0
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	100.0
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	100.0
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	100.0
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	100.0
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	100.0
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	100.0
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	100.0
KOG3653	534	consensus Transforming growth factor beta/activin	100.0
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	100.0
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	100.0
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	100.0
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	100.0
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	100.0
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	100.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	100.0
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	100.0
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	100.0
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	100.0
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	100.0
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	100.0
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	100.0
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	100.0
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	100.0
PTZ00284	467	protein kinase; Provisional	100.0
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	100.0
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	100.0
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	100.0
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	100.0
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	100.0
KOG0584	632	consensus Serine/threonine protein kinase [General	100.0
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	100.0
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	100.0
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	100.0
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	100.0
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	100.0
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	100.0
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	100.0
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	100.0
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	100.0
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	100.0
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	100.0
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	100.0
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	100.0
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	100.0
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	100.0
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	100.0
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	100.0
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	100.0
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	100.0
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	100.0
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	100.0
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	100.0
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	100.0
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	100.0
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	100.0
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	100.0
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	100.0
KOG0690	516	consensus Serine/threonine protein kinase [Signal	100.0
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	100.0
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	100.0
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	100.0
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	100.0
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	100.0
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	100.0
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	100.0
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	100.0
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	100.0
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	100.0
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	100.0
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	100.0
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	100.0
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	100.0
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	100.0
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	100.0
KOG0586	596	consensus Serine/threonine protein kinase [General	100.0
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	100.0
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	100.0
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	100.0
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	100.0
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	100.0
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	100.0
PLN00009	294	cyclin-dependent kinase A; Provisional	100.0
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	100.0
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	100.0
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	100.0
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	100.0
PHA03210	501	serine/threonine kinase US3; Provisional	100.0
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	100.0
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	100.0
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	100.0
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	100.0
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	100.0
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	100.0
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	100.0
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	100.0
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	100.0
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	100.0
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	100.0
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	100.0
PHA02882	294	putative serine/threonine kinase; Provisional	100.0
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	100.0
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	100.0
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	100.0
KOG0696	683	consensus Serine/threonine protein kinase [Signal	100.0
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	100.0
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	100.0
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	100.0
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	100.0
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	100.0
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	100.0
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	100.0
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	100.0
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	100.0
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	100.0
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	100.0
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	100.0
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	100.0
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	100.0
KOG0607	463	consensus MAP kinase-interacting kinase and relate	100.0
PTZ00024	335	cyclin-dependent protein kinase; Provisional	100.0
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	100.0
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	100.0
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	100.0
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	100.0
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	100.0
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	100.0
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	100.0
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	100.0
KOG0695	593	consensus Serine/threonine protein kinase [Signal	100.0
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	100.0
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	100.0
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	100.0
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	100.0
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	100.0
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	100.0
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	100.0
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	100.0
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	100.0
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	100.0
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	100.0
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	100.0
PLN03224	507	probable serine/threonine protein kinase; Provisio	100.0
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.98
KOG1152	772	consensus Signal transduction serine/threonine kin	99.98
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.97
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.97
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.97
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.97
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.96
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.96
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.96
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.96
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.96
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.95
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.94
PRK09188	365	serine/threonine protein kinase; Provisional	99.94
PLN00181	793	protein SPA1-RELATED; Provisional	99.94
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.93
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.93
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.93
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.92
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.91
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.91
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.9
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.9
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.89
PRK12274	218	serine/threonine protein kinase; Provisional	99.88
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.87
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.86
PRK10345	210	hypothetical protein; Provisional	99.86
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.85
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.85
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.84
PRK14879	211	serine/threonine protein kinase; Provisional	99.83
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.83
smart00090	237	RIO RIO-like kinase.	99.82
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.82
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.8
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.8
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.76
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.76
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.73
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.73
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.72
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.67
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.66
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.56
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.51
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.48
KOG1243	690	consensus Protein kinase [General function predict	99.46
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.43
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.43
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.38
KOG3087	229	consensus Serine/threonine protein kinase [General	99.34
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	99.34
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	99.32
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.3
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.21
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	99.19
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	99.14
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.97
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.95
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.9
PRK09902	216	hypothetical protein; Provisional	98.89
COG4248	637	Uncharacterized protein with protein kinase and he	98.8
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	98.71
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.67
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	98.59
KOG0576	829	consensus Mitogen-activated protein kinase kinase	98.59
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	98.57
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.56
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	98.49
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	98.44
PF01636	239	APH: Phosphotransferase enzyme family This family	98.41
KOG1235	538	consensus Predicted unusual protein kinase [Genera	98.37
PLN02876	822	acyl-CoA dehydrogenase	98.36
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	98.3
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	98.3
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	98.12
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	98.01
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	97.99
PRK10593	297	hypothetical protein; Provisional	97.95
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	97.9
PRK09550	401	mtnK methylthioribose kinase; Reviewed	97.88
PRK05231	319	homoserine kinase; Provisional	97.87
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	97.83
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	97.79
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	97.67
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	97.51
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	97.5
KOG1826	2724	consensus Ras GTPase activating protein RasGAP/neu	97.47
KOG2268	465	consensus Serine/threonine protein kinase [Signal	97.37
KOG2270	520	consensus Serine/threonine protein kinase involved	97.32
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	97.19
PLN02756	418	S-methyl-5-thioribose kinase	97.14
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	97.11
PLN02236	344	choline kinase	97.03
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	96.88
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	96.88
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	96.61
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	96.54
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	96.53
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	96.46
COG3001	286	Uncharacterized protein conserved in bacteria [Fun	96.18
PRK12396	409	5-methylribose kinase; Reviewed	96.09
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	96.04
COG2334	331	Putative homoserine kinase type II (protein kinase	95.86
PF04655	253	APH_6_hur: Aminoglycoside/hydroxyurea antibiotic r	95.58
PRK06148	1013	hypothetical protein; Provisional	95.51
PRK11768	325	serine/threonine protein kinase; Provisional	95.25
PTZ00384	383	choline kinase; Provisional	95.16
PTZ00296	442	choline kinase; Provisional	94.52

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-59  Score=426.15  Aligned_cols=272  Identities=35%  Similarity=0.571  Sum_probs=239.8

Q ss_pred             CccccCHHHHHHhhcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeee
Q 038823           57 PYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGC  135 (338)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~  135 (338)
                      +.+.|++.++..+|++|+..++||+|+||.||+|.. ++..||||++....... ..+|.+|+.++.+++|||+|+|+||
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~-~~eF~~Ei~~ls~l~H~Nlv~LlGy  139 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQG-EREFLNEVEILSRLRHPNLVKLLGY  139 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcc-hhHHHHHHHHHhcCCCcCcccEEEE
Confidence            678899999999999999999999999999999999 55899999887664332 3569999999999999999999999


Q ss_pred             eecCC-cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCce
Q 038823          136 CLETP-IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVA  214 (338)
Q Consensus       136 ~~~~~-~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~  214 (338)
                      |.+.+ ..+||||||++|+|.++|......   +++|.++++||.++|.||+|||+.+..+||||||||+|||||+++++
T Consensus       140 C~e~~~~~~LVYEym~nGsL~d~L~~~~~~---~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~a  216 (361)
T KOG1187|consen  140 CLEGGEHRLLVYEYMPNGSLEDHLHGKKGE---PLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNA  216 (361)
T ss_pred             EecCCceEEEEEEccCCCCHHHHhCCCCCC---CCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCE
Confidence            99998 499999999999999999886532   78999999999999999999999888899999999999999999999


Q ss_pred             EEecCCCCcccCC-CCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHHH
Q 038823          215 KLFDFSESISIPE-GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYL  293 (338)
Q Consensus       215 kl~Dfg~a~~~~~-~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~~  293 (338)
                      ||+|||+|+..+. ...... .. .||.+|+|||+...+..+.|+|||||||+|+||+||+.|.+.... .....+++|+
T Consensus       217 KlsDFGLa~~~~~~~~~~~~-~~-~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~-~~~~~l~~w~  293 (361)
T KOG1187|consen  217 KLSDFGLAKLGPEGDTSVST-TV-MGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRP-RGELSLVEWA  293 (361)
T ss_pred             EccCccCcccCCccccceee-ec-CCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCC-cccccHHHHH
Confidence            9999999977765 322211 11 799999999999999999999999999999999999998886553 4445599999


Q ss_pred             HHHHhcCccccccccccccCcCCcccH-HHHHHHHHHHHHccCCCC
Q 038823          294 KNYLQNNRFTEIADPIIVQDLSCTETE-HQFQACARLTLECLNESP  338 (338)
Q Consensus       294 ~~~~~~~~~~~~~d~~l~~~~~~~~~~-~~~~~~~~l~~~C~~~~P  338 (338)
                      +..+.++.+.+++|+.+..+.   ... +++..+..+|++|++.+|
T Consensus       294 ~~~~~~~~~~eiiD~~l~~~~---~~~~~~~~~~~~~a~~C~~~~~  336 (361)
T KOG1187|consen  294 KPLLEEGKLREIVDPRLKEGE---YPDEKEVKKLAELALRCLRPDP  336 (361)
T ss_pred             HHHHHCcchhheeCCCccCCC---CChHHHHHHHHHHHHHHcCcCC
Confidence            999999999999999998421   222 789999999999999986

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=6.8e-51  Score=352.96  Aligned_cols=198  Identities=18%  Similarity=0.217  Sum_probs=181.5

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCc-ceEEEee
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPI-PILVFEY  148 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~-~~lv~e~  148 (338)
                      +....+.||+|..|+||++..  ++..+|+|++.........+++.+|+++++..+|||||.+||.|...+. .+++|||
T Consensus        80 dle~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~mEY  159 (364)
T KOG0581|consen   80 DLERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICMEY  159 (364)
T ss_pred             HhhhhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeehhh
Confidence            445568899999999999999  7899999999766667777889999999999999999999999999884 9999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      |++|||++++...+     .+++....+++.++++||.|||+  ..+||||||||+|||++..|.+||+|||.+......
T Consensus       160 MDgGSLd~~~k~~g-----~i~E~~L~~ia~~VL~GL~YLh~--~~~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS  232 (364)
T KOG0581|consen  160 MDGGSLDDILKRVG-----RIPEPVLGKIARAVLRGLSYLHE--ERKIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNS  232 (364)
T ss_pred             cCCCCHHHHHhhcC-----CCCHHHHHHHHHHHHHHHHHHhh--ccCeeeccCCHHHeeeccCCCEEeccccccHHhhhh
Confidence            99999999998765     59999999999999999999994  399999999999999999999999999999887655


Q ss_pred             CceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                          .....+||..|||||.+.++.|+.++||||||+.++|+++|+.||...
T Consensus       233 ----~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~  280 (364)
T KOG0581|consen  233 ----IANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPP  280 (364)
T ss_pred             ----hcccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCc
Confidence                237788999999999999999999999999999999999999999864

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=4.3e-50  Score=362.96  Aligned_cols=206  Identities=29%  Similarity=0.392  Sum_probs=179.3

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEECCeE-EEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCC-cceE
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFWQERL-ISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETP-IPIL  144 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~-vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-~~~l  144 (338)
                      ....++...+.||+|+||+||+|.+.|+. ||+|++.... .....+.|.+|+.+|.+++|||||+++|+|.+.. ...+
T Consensus        38 i~~~~l~~~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~i  117 (362)
T KOG0192|consen   38 IDPDELPIEEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCI  117 (362)
T ss_pred             cChHHhhhhhhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEE
Confidence            33344555566999999999999998888 9999998654 2333678999999999999999999999999887 7999


Q ss_pred             EEeecCCCCHHHhhhcC-CCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC-eeecCCCCCceeeCCCC-ceEEecCCC
Q 038823          145 VFEYGEYTTLRDRIFGA-PQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRP-IVFGNLISLCILFNEEN-VAKLFDFSE  221 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~-~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~-iiH~dik~~Nill~~~~-~~kl~Dfg~  221 (338)
                      ||||+++|+|.+++... .    ..+++..+++++.|||+||.|||   +.+ ||||||||+|||++.++ ++||+|||+
T Consensus       118 VtEy~~~GsL~~~l~~~~~----~~l~~~~~l~~aldiArGm~YLH---~~~~iIHrDLK~~NiLv~~~~~~~KI~DFGl  190 (362)
T KOG0192|consen  118 VTEYMPGGSLSVLLHKKRK----RKLPLKVRLRIALDIARGMEYLH---SEGPIIHRDLKSDNILVDLKGKTLKIADFGL  190 (362)
T ss_pred             EEEeCCCCcHHHHHhhccc----CCCCHHHHHHHHHHHHHHHHHHh---cCCCeeecccChhhEEEcCCCCEEEECCCcc
Confidence            99999999999999884 3    27999999999999999999999   777 99999999999999998 999999999


Q ss_pred             CcccCCCCceeeeecccccCCcccccccc--cCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          222 SISIPEGETHIITRSRFGAWTYSAPEYKR--GGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       222 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~--~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ++.......  ......||+.|||||++.  ...|+.|+||||||+++|||+||+.||.....
T Consensus       191 sr~~~~~~~--~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~  251 (362)
T KOG0192|consen  191 SREKVISKT--SMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAP  251 (362)
T ss_pred             ceeeccccc--cccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCCH
Confidence            987765321  114468999999999999  56899999999999999999999999987544

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=4.9e-50  Score=350.70  Aligned_cols=202  Identities=23%  Similarity=0.316  Sum_probs=184.4

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ..+|...+.||.|+||+||+|+.  ++..||||.+.... ..+..+....|+.+|+.++|||||.+++++.+++.+||||
T Consensus         9 ~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lVM   88 (429)
T KOG0595|consen    9 VGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLVM   88 (429)
T ss_pred             cccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEEE
Confidence            35688888899999999999999  78899999998664 6667788899999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC------CceEEecCC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE------NVAKLFDFS  220 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~------~~~kl~Dfg  220 (338)
                      |||.||+|.+++...+     .+++.++..++.|++.||++||   +++||||||||.||||+..      -.+||+|||
T Consensus        89 EyC~gGDLs~yi~~~~-----~l~e~t~r~Fm~QLA~alq~L~---~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFG  160 (429)
T KOG0595|consen   89 EYCNGGDLSDYIRRRG-----RLPEATARHFMQQLASALQFLH---ENNIIHRDLKPQNILLSTTARNDTSPVLKIADFG  160 (429)
T ss_pred             EeCCCCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCcceEEeccCCCCCCCceEEecccc
Confidence            9999999999999886     5999999999999999999999   9999999999999999865      458999999


Q ss_pred             CCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          221 ESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      +|+......-.   ....|++.|||||++...+|+.|+|+||+|+++|+|++|+.||+....
T Consensus       161 fAR~L~~~~~a---~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~t~  219 (429)
T KOG0595|consen  161 FARFLQPGSMA---ETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDAETP  219 (429)
T ss_pred             hhhhCCchhHH---HHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCccccCH
Confidence            99998765432   667899999999999999999999999999999999999999986443

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-50  Score=364.23  Aligned_cols=246  Identities=22%  Similarity=0.301  Sum_probs=205.7

Q ss_pred             HHHHHHhhcCCCcCCccccCCCceEEEEEECCe-EEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCc
Q 038823           63 AKELEIATNNYDERKFIKQDSTYKLYKGFWQER-LISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPI  141 (338)
Q Consensus        63 ~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~-~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~  141 (338)
                      .+.|+...+.+...+.||+|.||.||.|.+++. .||+|.++....  ..+.|.+|+++|++|+|+|||+++|+|..+..
T Consensus       198 ~d~wei~r~~l~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m--~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~p  275 (468)
T KOG0197|consen  198 RDPWEIPREELKLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEGSM--SPEAFLREAQIMKKLRHEKLVKLYGVCTKQEP  275 (468)
T ss_pred             cCCeeecHHHHHHHHHhcCCccceEEEEEEcCCCcccceEEecccc--ChhHHHHHHHHHHhCcccCeEEEEEEEecCCc
Confidence            445666666677788999999999999999655 899999987622  22678899999999999999999999999889


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCC
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSE  221 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~  221 (338)
                      ++||||||+.|+|.++|....+   ..++..+.+.++.|||+||+||+   ++++|||||.++|||++++..+||+|||+
T Consensus       276 iyIVtE~m~~GsLl~yLr~~~~---~~l~~~~Ll~~a~qIaeGM~YLe---s~~~IHRDLAARNiLV~~~~~vKIsDFGL  349 (468)
T KOG0197|consen  276 IYIVTEYMPKGSLLDYLRTREG---GLLNLPQLLDFAAQIAEGMAYLE---SKNYIHRDLAARNILVDEDLVVKISDFGL  349 (468)
T ss_pred             eEEEEEecccCcHHHHhhhcCC---CccchHHHHHHHHHHHHHHHHHH---hCCccchhhhhhheeeccCceEEEccccc
Confidence            9999999999999999987333   36899999999999999999999   99999999999999999999999999999


Q ss_pred             CcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccCCcccccHHHHHHHHHhcC
Q 038823          222 SISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRTHGSVRHLIEYLKNYLQNN  300 (338)
Q Consensus       222 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~~~~~~~l~~~~~~~~~~~  300 (338)
                      |+...++... ......-...|.|||.+..+.++.|||||||||+||||+| |+.||+.+..    ..++    ..+   
T Consensus       350 Ar~~~d~~Y~-~~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~msn----~ev~----~~l---  417 (468)
T KOG0197|consen  350 ARLIGDDEYT-ASEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGMSN----EEVL----ELL---  417 (468)
T ss_pred             ccccCCCcee-ecCCCCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCCCCH----HHHH----HHH---
Confidence            9965554433 2244456789999999999999999999999999999999 9999987655    2222    222   


Q ss_pred             ccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          301 RFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       301 ~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                                ...++......|+.++-+|+..||+.+|
T Consensus       418 ----------e~GyRlp~P~~CP~~vY~lM~~CW~~~P  445 (468)
T KOG0197|consen  418 ----------ERGYRLPRPEGCPDEVYELMKSCWHEDP  445 (468)
T ss_pred             ----------hccCcCCCCCCCCHHHHHHHHHHhhCCc
Confidence                      2223333444577889999999999998

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.3e-50  Score=336.90  Aligned_cols=207  Identities=21%  Similarity=0.210  Sum_probs=180.4

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeee-eeecCCc-ceEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIG-CCLETPI-PILV  145 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~-~~~~~~~-~~lv  145 (338)
                      .+|.+.+.||.|+||+||++..  +|..+|.|.++-.. +.+..+....|+.+|++|+|||||++++ .+.+++. +++|
T Consensus        19 ~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlniv   98 (375)
T KOG0591|consen   19 ADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIV   98 (375)
T ss_pred             HHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHH
Confidence            4577889999999999999998  89999999998432 5566788999999999999999999999 5555555 8999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFP-RPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~-~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ||||++|+|...++.-.... ..+++..+++++.|++.||..+|+-++ .-|+||||||.||+++.+|.+||+|||+++.
T Consensus        99 mE~c~~GDLsqmIk~~K~qk-r~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~  177 (375)
T KOG0591|consen   99 MELCDAGDLSQMIKHFKKQK-RLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLGRF  177 (375)
T ss_pred             HHhhcccCHHHHHHHHHhcc-ccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeeccchhHhH
Confidence            99999999999987533211 379999999999999999999994322 2399999999999999999999999999998


Q ss_pred             cCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          225 IPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       225 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .....+.  ....+||+.||+||.+.+..|+.||||||+||++|||+.-++||...
T Consensus       178 l~s~~tf--A~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~  231 (375)
T KOG0591|consen  178 LSSKTTF--AHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGD  231 (375)
T ss_pred             hcchhHH--HHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccc
Confidence            8765443  26788999999999999999999999999999999999999999864

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-48  Score=336.81  Aligned_cols=205  Identities=20%  Similarity=0.243  Sum_probs=186.2

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcce
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      ...++|++.+.||+|+||.||.++-  +++.+|+|.+++..  .....+...+|..+|.+++||+||+++..|++...+|
T Consensus        22 ~~~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLy  101 (357)
T KOG0598|consen   22 VGPDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLY  101 (357)
T ss_pred             CChhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEE
Confidence            3457899999999999999999998  78899999998764  3445788999999999999999999999999999999


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      ||+||+.||.|..+|.+.+     .+++..+..++.+|+.||.|||   +++||||||||+|||||.+|+++|+|||+++
T Consensus       102 lVld~~~GGeLf~hL~~eg-----~F~E~~arfYlaEi~lAL~~LH---~~gIiyRDlKPENILLd~~GHi~LtDFgL~k  173 (357)
T KOG0598|consen  102 LVLDYLNGGELFYHLQREG-----RFSEDRARFYLAEIVLALGYLH---SKGIIYRDLKPENILLDEQGHIKLTDFGLCK  173 (357)
T ss_pred             EEEeccCCccHHHHHHhcC-----CcchhHHHHHHHHHHHHHHHHH---hCCeeeccCCHHHeeecCCCcEEEeccccch
Confidence            9999999999999999876     5999999999999999999999   9999999999999999999999999999998


Q ss_pred             ccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ..-.....  +...+||+.|||||++.+..|+..+|+||+|+++|||+||.+||...+.
T Consensus       174 ~~~~~~~~--t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~~~  230 (357)
T KOG0598|consen  174 EDLKDGDA--TRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAEDV  230 (357)
T ss_pred             hcccCCCc--cccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCccH
Confidence            65444332  2557899999999999999999999999999999999999999986443

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=6e-49  Score=331.43  Aligned_cols=257  Identities=20%  Similarity=0.261  Sum_probs=205.5

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchH-HHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSA-CKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      +.|+...++|+|+||+||++++  +|+.||||++.....+.. .+-.++|+++|++++|+|+|.++.+|.....++||+|
T Consensus         2 ekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE   81 (396)
T KOG0593|consen    2 EKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFE   81 (396)
T ss_pred             cHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEee
Confidence            3577788999999999999999  899999999987755443 4557899999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC-
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP-  226 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~-  226 (338)
                      ||+. ++.+-+....+    .++...+.+++.|++.|+.|+|   +.++|||||||+|||++.+|.+||||||+|+... 
T Consensus        82 ~~dh-TvL~eLe~~p~----G~~~~~vk~~l~Q~l~ai~~cH---k~n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~  153 (396)
T KOG0593|consen   82 YCDH-TVLHELERYPN----GVPSELVKKYLYQLLKAIHFCH---KNNCIHRDIKPENILITQNGVVKLCDFGFARTLSA  153 (396)
T ss_pred             ecch-HHHHHHHhccC----CCCHHHHHHHHHHHHHHhhhhh---hcCeecccCChhheEEecCCcEEeccchhhHhhcC
Confidence            9996 55555666554    6999999999999999999999   9999999999999999999999999999999887 


Q ss_pred             CCCceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHHHHHHHhc------
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQN------  299 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~~~~~~~~------  299 (338)
                      +++.+   +..+.|..|.|||.+.+ .+|...+||||+||++.||+||.+-|+..++.++...+..-+-++++.      
T Consensus       154 pgd~Y---TDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~L~prhq~iF~  230 (396)
T KOG0593|consen  154 PGDNY---TDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLIRKTLGNLIPRHQSIFS  230 (396)
T ss_pred             Ccchh---hhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHHHHHHcccCHHHHHHhc
Confidence            33333   66788999999999987 579999999999999999999999999887765555544433333332      


Q ss_pred             --Ccccccccccccc-CcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          300 --NRFTEIADPIIVQ-DLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       300 --~~~~~~~d~~l~~-~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                        .-+.-+.-|.... ++-++..+.....++.++..|+++||
T Consensus       231 ~N~~F~Gv~lP~~~~~epLe~k~p~~s~~~ld~~k~cL~~dP  272 (396)
T KOG0593|consen  231 SNPFFHGVRLPEPEHPEPLERKYPKISNVLLDLLKKCLKMDP  272 (396)
T ss_pred             cCCceeeeecCCCCCccchhhhcccchHHHHHHHHHHhcCCc
Confidence              1111111111111 00111233444578899999999998

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.4e-47  Score=347.89  Aligned_cols=243  Identities=15%  Similarity=0.196  Sum_probs=201.8

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ..|...++||+|||+.||.+++  +|..||+|++.+..  .....+...+|+++.++|+|||||+++++|.+.+..|+|.
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivL   97 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVL   97 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEE
Confidence            4699999999999999999999  89999999998643  4455678899999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      |+|..++|..++++..     ++++..+..+..||+.||.|||   +.+|+|||||..|+|++++.++||+|||+|....
T Consensus        98 ELC~~~sL~el~Krrk-----~ltEpEary~l~QIv~GlkYLH---~~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le  169 (592)
T KOG0575|consen   98 ELCHRGSLMELLKRRK-----PLTEPEARYFLRQIVEGLKYLH---SLGIIHRDLKLGNLFLNENMNVKIGDFGLATQLE  169 (592)
T ss_pred             EecCCccHHHHHHhcC-----CCCcHHHHHHHHHHHHHHHHHH---hcCceecccchhheeecCcCcEEecccceeeeec
Confidence            9999999999998554     7999999999999999999999   9999999999999999999999999999998887


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHH--HHHHHHhcCcccc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIE--YLKNYLQNNRFTE  304 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~--~~~~~~~~~~~~~  304 (338)
                      .+....  ....||+.|+|||++.....+..+||||+||+||-|++|++||+...-.+....+..  +..+..-.....+
T Consensus       170 ~~~Erk--~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~vkety~~Ik~~~Y~~P~~ls~~A~d  247 (592)
T KOG0575|consen  170 YDGERK--KTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKTVKETYNKIKLNEYSMPSHLSAEAKD  247 (592)
T ss_pred             Cccccc--ceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccchHHHHHHHHHhcCcccccccCHHHHH
Confidence            442211  566899999999999988899999999999999999999999986433222221111  0111001122336


Q ss_pred             ccccccccCcCCcccHHHH
Q 038823          305 IADPIIVQDLSCTETEHQF  323 (338)
Q Consensus       305 ~~d~~l~~~~~~~~~~~~~  323 (338)
                      ++...|..+|..|++.+++
T Consensus       248 LI~~lL~~~P~~Rpsl~~v  266 (592)
T KOG0575|consen  248 LIRKLLRPNPSERPSLDEV  266 (592)
T ss_pred             HHHHHhcCCcccCCCHHHH
Confidence            6677777788777776654

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.7e-48  Score=338.76  Aligned_cols=241  Identities=18%  Similarity=0.198  Sum_probs=196.6

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCch------HHHHHHHHHHHHhccCCcceeeeeeeeecCC
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDS------ACKFSINNIVYAAQMDHKHILKLIGCCLETP  140 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~------~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~  140 (338)
                      ..+.|-+.+.||+|+||.|-+|..  +++.||||++++.....      ......+|+++|++|+|||||++++++...+
T Consensus       170 ~~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~d  249 (475)
T KOG0615|consen  170 FNDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPD  249 (475)
T ss_pred             hcceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCC
Confidence            334566788999999999999998  89999999998653211      2234579999999999999999999999999


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC---CceEEe
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE---NVAKLF  217 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~---~~~kl~  217 (338)
                      ..|+||||++||+|.+.+-.++     .+.+..-..++.|++.|+.|||   +.||+||||||+|||++.+   ..+||+
T Consensus       250 s~YmVlE~v~GGeLfd~vv~nk-----~l~ed~~K~~f~Qll~avkYLH---~~GI~HRDiKPeNILl~~~~e~~llKIt  321 (475)
T KOG0615|consen  250 SSYMVLEYVEGGELFDKVVANK-----YLREDLGKLLFKQLLTAVKYLH---SQGIIHRDIKPENILLSNDAEDCLLKIT  321 (475)
T ss_pred             ceEEEEEEecCccHHHHHHhcc-----ccccchhHHHHHHHHHHHHHHH---HcCcccccCCcceEEeccCCcceEEEec
Confidence            9999999999999999998876     5888888999999999999999   9999999999999999766   779999


Q ss_pred             cCCCCcccCCCCceeeeecccccCCcccccccccCC---CCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHHHH
Q 038823          218 DFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGV---FNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLK  294 (338)
Q Consensus       218 Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~~~  294 (338)
                      |||+|+..+....   .....||+.|.|||++.+..   +..++|+||+||+||-+++|.+||.......   .+.+.+.
T Consensus       322 DFGlAK~~g~~sf---m~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~---sl~eQI~  395 (475)
T KOG0615|consen  322 DFGLAKVSGEGSF---MKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDP---SLKEQIL  395 (475)
T ss_pred             ccchhhcccccee---hhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccCCc---cHHHHHh
Confidence            9999998874322   26788999999999997754   3348899999999999999999998644322   1222221


Q ss_pred             --------HHHh--cCccccccccccccCcCCcccHHHH
Q 038823          295 --------NYLQ--NNRFTEIADPIIVQDLSCTETEHQF  323 (338)
Q Consensus       295 --------~~~~--~~~~~~~~d~~l~~~~~~~~~~~~~  323 (338)
                              ..|.  .....++++.+|..+|++|++.++.
T Consensus       396 ~G~y~f~p~~w~~Iseea~dlI~~mL~VdP~~R~s~~ea  434 (475)
T KOG0615|consen  396 KGRYAFGPLQWDRISEEALDLINWMLVVDPENRPSADEA  434 (475)
T ss_pred             cCcccccChhhhhhhHHHHHHHHHhhEeCcccCcCHHHH
Confidence                    1111  2345678888899999988886543

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=5.2e-46  Score=335.28  Aligned_cols=220  Identities=14%  Similarity=0.158  Sum_probs=194.2

Q ss_pred             HHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcc
Q 038823           67 EIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIP  142 (338)
Q Consensus        67 ~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~  142 (338)
                      ....++|+.++.||+|+||.||+|+-  +|..+|+|++++..  ....+++...|-.+|....+++||+||..|++.+.+
T Consensus       137 r~~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~L  216 (550)
T KOG0605|consen  137 RLSLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYL  216 (550)
T ss_pred             cCCcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCee
Confidence            34567999999999999999999998  89999999998764  455678899999999999999999999999999999


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSES  222 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a  222 (338)
                      ||||||++||++..+|.+.+     .|++..+..++.+++.|+..||   ..|+|||||||+|+|||..|++||+|||++
T Consensus       217 YLiMEylPGGD~mTLL~~~~-----~L~e~~arfYiaE~vlAI~~iH---~~gyIHRDIKPdNlLiD~~GHiKLSDFGLs  288 (550)
T KOG0605|consen  217 YLIMEYLPGGDMMTLLMRKD-----TLTEDWARFYIAETVLAIESIH---QLGYIHRDIKPDNLLIDAKGHIKLSDFGLS  288 (550)
T ss_pred             EEEEEecCCccHHHHHHhcC-----cCchHHHHHHHHHHHHHHHHHH---HcCcccccCChhheeecCCCCEeecccccc
Confidence            99999999999999999886     6999999999999999999999   999999999999999999999999999998


Q ss_pred             cccCCC----------------------Cce-----ee------------------eecccccCCcccccccccCCCCcc
Q 038823          223 ISIPEG----------------------ETH-----II------------------TRSRFGAWTYSAPEYKRGGVFNEK  257 (338)
Q Consensus       223 ~~~~~~----------------------~~~-----~~------------------~~~~~gt~~y~aPE~~~~~~~~~~  257 (338)
                      ......                      +..     ..                  ....+||+.|+|||++.+..|+..
T Consensus       289 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~  368 (550)
T KOG0605|consen  289 TGLDKKHRIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKE  368 (550)
T ss_pred             chhhhhhhhhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCcc
Confidence            533210                      000     00                  124579999999999999999999


Q ss_pred             chHHHHHHHHHHHHhCCCCcCCccCCcccccHHHHHH
Q 038823          258 LDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLK  294 (338)
Q Consensus       258 ~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~~~  294 (338)
                      +|+||||||+|||+.|.+||....+.+....+++|..
T Consensus       369 cDwWSLG~ImyEmLvGyPPF~s~tp~~T~rkI~nwr~  405 (550)
T KOG0605|consen  369 CDWWSLGCIMYEMLVGYPPFCSETPQETYRKIVNWRE  405 (550)
T ss_pred             ccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhh
Confidence            9999999999999999999999888777777777654

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=5.3e-46  Score=312.76  Aligned_cols=199  Identities=18%  Similarity=0.196  Sum_probs=184.7

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++|+..+.||.|+||.|.+++.  ++.-+|+|++.+..  .....++..+|..+|+.+.||+++++++.|.+.+.+++||
T Consensus        44 ~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lymvm  123 (355)
T KOG0616|consen   44 QDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYMVM  123 (355)
T ss_pred             hhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEEEE
Confidence            4688889999999999999998  78899999998653  4566788999999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||.+||.|++++++.+     .+++..+..++.||+.||+|||   +.+|++||+||+|||+|.+|.+||+|||+|+...
T Consensus       124 eyv~GGElFS~Lrk~~-----rF~e~~arFYAAeivlAleylH---~~~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~  195 (355)
T KOG0616|consen  124 EYVPGGELFSYLRKSG-----RFSEPHARFYAAEIVLALEYLH---SLDIIYRDLKPENLLLDQNGHIKITDFGFAKRVS  195 (355)
T ss_pred             eccCCccHHHHHHhcC-----CCCchhHHHHHHHHHHHHHHHH---hcCeeeccCChHHeeeccCCcEEEEeccceEEec
Confidence            9999999999999876     5999999999999999999999   9999999999999999999999999999998876


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      .. +    ...+||+.|+|||.+....++.++|+|||||++|||+.|.+||...++
T Consensus       196 ~r-T----~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~  246 (355)
T KOG0616|consen  196 GR-T----WTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNP  246 (355)
T ss_pred             Cc-E----EEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCCh
Confidence            55 2    566899999999999999999999999999999999999999987665

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-46  Score=339.06  Aligned_cols=250  Identities=18%  Similarity=0.210  Sum_probs=206.0

Q ss_pred             HHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCc
Q 038823           67 EIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPI  141 (338)
Q Consensus        67 ~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~  141 (338)
                      .+..++|.+.+.||+|+|++|++|+.  ++..+|||++.+..  .....+....|-.+|.+| .||.|++||..|.+...
T Consensus        69 kk~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~s  148 (604)
T KOG0592|consen   69 KKTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEES  148 (604)
T ss_pred             cCChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccc
Confidence            56668999999999999999999999  88999999997664  233346678899999999 79999999999999999


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCC
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSE  221 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~  221 (338)
                      +|+|+||+++|+|.++|.+.+     .|++.....++.+|+.||+|||   +.|||||||||+|||||.||++||+|||.
T Consensus       149 LYFvLe~A~nGdll~~i~K~G-----sfde~caR~YAAeIldAleylH---~~GIIHRDlKPENILLd~dmhikITDFGs  220 (604)
T KOG0592|consen  149 LYFVLEYAPNGDLLDLIKKYG-----SFDETCARFYAAEILDALEYLH---SNGIIHRDLKPENILLDKDGHIKITDFGS  220 (604)
T ss_pred             eEEEEEecCCCcHHHHHHHhC-----cchHHHHHHHHHHHHHHHHHHH---hcCceeccCChhheeEcCCCcEEEeeccc
Confidence            999999999999999999886     5999999999999999999999   99999999999999999999999999999


Q ss_pred             CcccCCCCce---------ee--eecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHH
Q 038823          222 SISIPEGETH---------II--TRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLI  290 (338)
Q Consensus       222 a~~~~~~~~~---------~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~  290 (338)
                      |..++.....         ..  ....+||..|.+||++.++..+..+|+|+|||++|+|+.|.+||...+.--..+.++
T Consensus       221 AK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~NeyliFqkI~  300 (604)
T KOG0592|consen  221 AKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAANEYLIFQKIQ  300 (604)
T ss_pred             cccCChhhccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccccHHHHHHHHH
Confidence            9887653221         11  145789999999999999999999999999999999999999998765422222222


Q ss_pred             HHHHHHHh--cCccccccccccccCcCCcccHHHHH
Q 038823          291 EYLKNYLQ--NNRFTEIADPIIVQDLSCTETEHQFQ  324 (338)
Q Consensus       291 ~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~~~~~~  324 (338)
                      ..-..+.+  .....++++.-|..|++.|...+++.
T Consensus       301 ~l~y~fp~~fp~~a~dLv~KLLv~dp~~Rlt~~qIk  336 (604)
T KOG0592|consen  301 ALDYEFPEGFPEDARDLIKKLLVRDPSDRLTSQQIK  336 (604)
T ss_pred             HhcccCCCCCCHHHHHHHHHHHccCccccccHHHHh
Confidence            22111111  12455666677777777776665543

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.6e-46  Score=352.40  Aligned_cols=248  Identities=23%  Similarity=0.320  Sum_probs=211.7

Q ss_pred             HHhhcCCCcCCccccCCCceEEEEEE-------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecC
Q 038823           67 EIATNNYDERKFIKQDSTYKLYKGFW-------QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLET  139 (338)
Q Consensus        67 ~~~~~~~~~~~~lg~G~~g~Vy~~~~-------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~  139 (338)
                      +..+.+....+.||+|.||.||+|..       +...||||.++...+.+..++|.+|++++..++|||||+|+|.|.++
T Consensus       482 ~i~r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~  561 (774)
T KOG1026|consen  482 EIPRSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREG  561 (774)
T ss_pred             EechhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccC
Confidence            34455666778899999999999997       34679999999987777889999999999999999999999999999


Q ss_pred             CcceEEEeecCCCCHHHhhhcCCCCC---------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC
Q 038823          140 PIPILVFEYGEYTTLRDRIFGAPQPH---------FEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE  210 (338)
Q Consensus       140 ~~~~lv~e~~~~gsL~~~l~~~~~~~---------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~  210 (338)
                      +..++|+|||..|||.++|.......         ..+++..+.+.||.|||.||.||-   +..+|||||-.+|.|+.+
T Consensus       562 ~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs---~~~FVHRDLATRNCLVge  638 (774)
T KOG1026|consen  562 DPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLS---SHHFVHRDLATRNCLVGE  638 (774)
T ss_pred             CeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---hCcccccchhhhhceecc
Confidence            99999999999999999997543211         224899999999999999999999   999999999999999999


Q ss_pred             CCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccCCcccccH
Q 038823          211 ENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRTHGSVRHL  289 (338)
Q Consensus       211 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~~~~~~~l  289 (338)
                      +..+||+|||+++.+-..+.+.......-..+|||||.+..+.+|.+||||||||+|||++| |+.||....+    +.+
T Consensus       639 ~l~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glSn----~EV  714 (774)
T KOG1026|consen  639 NLVVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLSN----QEV  714 (774)
T ss_pred             ceEEEecccccchhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccccch----HHH
Confidence            99999999999998887776655456667889999999999999999999999999999999 9999998766    223


Q ss_pred             HHHHHHHHhcCccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          290 IEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       290 ~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                      +    ..++++++        ..     ....|+.++.+|++.||+.+|
T Consensus       715 I----e~i~~g~l--------L~-----~Pe~CP~~vY~LM~~CW~~~P  746 (774)
T KOG1026|consen  715 I----ECIRAGQL--------LS-----CPENCPTEVYSLMLECWNENP  746 (774)
T ss_pred             H----HHHHcCCc--------cc-----CCCCCCHHHHHHHHHHhhcCc
Confidence            3    33444443        22     123466789999999999988

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.7e-44  Score=315.89  Aligned_cols=258  Identities=18%  Similarity=0.217  Sum_probs=206.3

Q ss_pred             HHHHHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCC
Q 038823           63 AKELEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETP  140 (338)
Q Consensus        63 ~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~  140 (338)
                      ..++....++|.....||.|..++||+|..  .+..||||++.........+.+.+|+..++.++||||++++.+|..+.
T Consensus        18 ~~~~p~n~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~   97 (516)
T KOG0582|consen   18 EKEFPLNAKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDS   97 (516)
T ss_pred             cccCCCCccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecc
Confidence            334556677899999999999999999999  889999999997766666789999999999999999999999999999


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                      .+|+||+||.+||+.+++...-.   ..+++..+..|++++++||.|||   ..|.||||||+.|||++++|.+||+|||
T Consensus        98 ~LWvVmpfMa~GS~ldIik~~~~---~Gl~E~~Ia~iLre~LkaL~YLH---~~G~IHRdvKAgnILi~~dG~VkLadFg  171 (516)
T KOG0582|consen   98 ELWVVMPFMAGGSLLDIIKTYYP---DGLEEASIATILREVLKALDYLH---QNGHIHRDVKAGNILIDSDGTVKLADFG  171 (516)
T ss_pred             eeEEeehhhcCCcHHHHHHHHcc---ccccHHHHHHHHHHHHHHHHHHH---hcCceecccccccEEEcCCCcEEEcCce
Confidence            99999999999999999987543   25999999999999999999999   9999999999999999999999999999


Q ss_pred             CCcccCCCCceee-e-ecccccCCcccccccccC--CCCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHHHHHH
Q 038823          221 ESISIPEGETHII-T-RSRFGAWTYSAPEYKRGG--VFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNY  296 (338)
Q Consensus       221 ~a~~~~~~~~~~~-~-~~~~gt~~y~aPE~~~~~--~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~~~~~  296 (338)
                      .+..+........ . ...+||+.|||||+++..  .|+.|+||||||++..||++|+.||....+      +...... 
T Consensus       172 vsa~l~~~G~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pP------mkvLl~t-  244 (516)
T KOG0582|consen  172 VSASLFDSGDRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYPP------MKVLLLT-  244 (516)
T ss_pred             eeeeecccCceeeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCCh------HHHHHHH-
Confidence            8766654432211 1 456899999999996543  499999999999999999999999987665      2222222 


Q ss_pred             HhcCccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          297 LQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       297 ~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                      +++..- .++-..+..+    ....--..+.+++..||+.||
T Consensus       245 Lqn~pp-~~~t~~~~~d----~~k~~~ksf~e~i~~CL~kDP  281 (516)
T KOG0582|consen  245 LQNDPP-TLLTSGLDKD----EDKKFSKSFREMIALCLVKDP  281 (516)
T ss_pred             hcCCCC-CcccccCChH----HhhhhcHHHHHHHHHHhhcCc
Confidence            222111 1111111111    122233467788888988887

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=3.9e-44  Score=327.30  Aligned_cols=212  Identities=19%  Similarity=0.301  Sum_probs=176.7

Q ss_pred             HHhhcCCCcCCccccCCCceEEEEEE-------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeeeec
Q 038823           67 EIATNNYDERKFIKQDSTYKLYKGFW-------QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCCLE  138 (338)
Q Consensus        67 ~~~~~~~~~~~~lg~G~~g~Vy~~~~-------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~  138 (338)
                      ....++|.+.+.||+|+||.||+|.+       ++..||+|++...........+.+|+.++.++ +||||++++++|..
T Consensus         3 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~   82 (338)
T cd05102           3 EFPRDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTK   82 (338)
T ss_pred             ccchhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecC
Confidence            34567899999999999999999974       24579999997654445557789999999999 89999999998876


Q ss_pred             C-CcceEEEeecCCCCHHHhhhcCCCC-----------------------------------------------------
Q 038823          139 T-PIPILVFEYGEYTTLRDRIFGAPQP-----------------------------------------------------  164 (338)
Q Consensus       139 ~-~~~~lv~e~~~~gsL~~~l~~~~~~-----------------------------------------------------  164 (338)
                      . +..++||||+++|+|.+++......                                                     
T Consensus        83 ~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (338)
T cd05102          83 PNGPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQE  162 (338)
T ss_pred             CCCceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchh
Confidence            4 4578999999999999998753210                                                     


Q ss_pred             ----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCceeeeeccccc
Q 038823          165 ----HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA  240 (338)
Q Consensus       165 ----~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt  240 (338)
                          ...++++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||+++...............++
T Consensus       163 ~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~  239 (338)
T cd05102         163 TDDLWKSPLTMEDLICYSFQVARGMEFLA---SRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLP  239 (338)
T ss_pred             ccccccCCCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCC
Confidence                0125888999999999999999999   899999999999999999999999999999876443332222344567


Q ss_pred             CCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       241 ~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      ..|+|||++.+..++.++|||||||++|||++ |..||....
T Consensus       240 ~~y~aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~  281 (338)
T cd05102         240 LKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQ  281 (338)
T ss_pred             ccccCcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCC
Confidence            88999999998889999999999999999997 999997543

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-44  Score=315.52  Aligned_cols=202  Identities=23%  Similarity=0.272  Sum_probs=173.9

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCC--cceEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETP--IPILV  145 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~--~~~lv  145 (338)
                      ..++...+.||+|+||+||++.+  +|...|+|......... .+.+.+|+.+|.+++|||||+++|......  .+++.
T Consensus        16 ~~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~-~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~   94 (313)
T KOG0198|consen   16 ISNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPT-SESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIF   94 (313)
T ss_pred             cchhhhhccccCccceEEEEEEecCCCcceeeeeeecccchh-HHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEee
Confidence            34577789999999999999999  47899999987663222 577899999999999999999999865554  58999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC-CCceEEecCCCCcc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE-ENVAKLFDFSESIS  224 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~-~~~~kl~Dfg~a~~  224 (338)
                      |||+++|||.+++.+.+.    .+++..+..++.||+.||.|||   +++|+||||||+|||++. ++.+||+|||++..
T Consensus        95 mEy~~~GsL~~~~~~~g~----~l~E~~v~~ytr~iL~GL~ylH---s~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~  167 (313)
T KOG0198|consen   95 MEYAPGGSLSDLIKRYGG----KLPEPLVRRYTRQILEGLAYLH---SKGIVHCDIKPANILLDPSNGDVKLADFGLAKK  167 (313)
T ss_pred             eeccCCCcHHHHHHHcCC----CCCHHHHHHHHHHHHHHHHHHH---hCCEeccCcccceEEEeCCCCeEEeccCccccc
Confidence            999999999999998764    5999999999999999999999   999999999999999999 79999999999887


Q ss_pred             cCC-CCceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          225 IPE-GETHIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       225 ~~~-~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ... ...........||+.|||||++.++ ....++|||||||++.||+||++||..
T Consensus       168 ~~~~~~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~  224 (313)
T KOG0198|consen  168 LESKGTKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSE  224 (313)
T ss_pred             cccccccccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchh
Confidence            653 1111122467899999999999864 344699999999999999999999985

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2e-44  Score=352.54  Aligned_cols=245  Identities=20%  Similarity=0.310  Sum_probs=204.8

Q ss_pred             hcCCCcCCccccCCCceEEEEEE---CC----eEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcc
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW---QE----RLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIP  142 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~---~~----~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~  142 (338)
                      ..+-+..+.||+|.||.||.|..   .+    ..||+|.+.+..+.+....|++|..+|++++|||||+++|.|.+...+
T Consensus       691 ~~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~  770 (1025)
T KOG1095|consen  691 RKNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPP  770 (1025)
T ss_pred             hhheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCc
Confidence            34456678899999999999998   33    349999999888888889999999999999999999999999999999


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPH--FEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~--~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                      ++++|||++|+|..+|++.....  ...++....+.++.+||.|+.||+   +++.|||||.++|.||+....+||+|||
T Consensus       771 ~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe---~~~fvHRDLAaRNCLL~~~r~VKIaDFG  847 (1025)
T KOG1095|consen  771 LILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLE---SKHFVHRDLAARNCLLDERRVVKIADFG  847 (1025)
T ss_pred             EEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHH---hCCCcCcchhhhheeecccCcEEEcccc
Confidence            99999999999999998862111  126899999999999999999999   9999999999999999999999999999


Q ss_pred             CCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccCCcccccHHHHHHHHHhc
Q 038823          221 ESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRTHGSVRHLIEYLKNYLQN  299 (338)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~~~~~~~l~~~~~~~~~~  299 (338)
                      +|+.+...+.+.......-..+|||||.+.++.++.|+|||||||++||++| |..||...+.    ..    +...+.+
T Consensus       848 lArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n----~~----v~~~~~~  919 (1025)
T KOG1095|consen  848 LARDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSN----FE----VLLDVLE  919 (1025)
T ss_pred             hhHhhhhchheeccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcch----HH----HHHHHHh
Confidence            9997666655544333345679999999999999999999999999999999 9999987655    11    2221222


Q ss_pred             CccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          300 NRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       300 ~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                      +.       +|.      +...|.+.+.+|++.||+.+|
T Consensus       920 gg-------RL~------~P~~CP~~ly~lM~~CW~~~p  945 (1025)
T KOG1095|consen  920 GG-------RLD------PPSYCPEKLYQLMLQCWKHDP  945 (1025)
T ss_pred             CC-------ccC------CCCCCChHHHHHHHHHccCCh
Confidence            22       222      334567779999999999988

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.6e-44  Score=321.87  Aligned_cols=207  Identities=18%  Similarity=0.237  Sum_probs=181.7

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecC--CcceE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLET--PIPIL  144 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~l  144 (338)
                      .+.|+....||+|.||.||+|++  +|..||+|++.... .........+|+.+|++|.||||++|.+...+.  ..+||
T Consensus       116 ~~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYl  195 (560)
T KOG0600|consen  116 ADSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYL  195 (560)
T ss_pred             hHHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEE
Confidence            35677788999999999999999  89999999997654 334456778999999999999999999998776  68999


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      |+|||+ -+|..++....-    .|++.++..++.|++.||.|+|   .++|+|||||.+|||||.+|.+||+|||+|+.
T Consensus       196 VFeYMd-hDL~GLl~~p~v----kft~~qIKc~mkQLl~Gl~~cH---~~gvlHRDIK~SNiLidn~G~LKiaDFGLAr~  267 (560)
T KOG0600|consen  196 VFEYMD-HDLSGLLSSPGV----KFTEPQIKCYMKQLLEGLEYCH---SRGVLHRDIKGSNILIDNNGVLKIADFGLARF  267 (560)
T ss_pred             EEeccc-chhhhhhcCCCc----ccChHHHHHHHHHHHHHHHHHh---hcCeeeccccccceEEcCCCCEEeccccceee
Confidence            999999 699999877654    7999999999999999999999   99999999999999999999999999999998


Q ss_pred             cCCCCceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCccCCcc
Q 038823          225 IPEGETHIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGS  285 (338)
Q Consensus       225 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~  285 (338)
                      +........ +..+-|..|.|||.+.+. .|+.++|+||.||||.||++|++.|......++
T Consensus       268 y~~~~~~~~-T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQ  328 (560)
T KOG0600|consen  268 YTPSGSAPY-TSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTEVEQ  328 (560)
T ss_pred             ccCCCCccc-ccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccHHHH
Confidence            766554333 667789999999998876 499999999999999999999999987655333

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-44  Score=329.71  Aligned_cols=210  Identities=24%  Similarity=0.340  Sum_probs=185.3

Q ss_pred             cCHHHHHHhhcCCCcCCccccCCCceEEEEEECCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecC
Q 038823           61 FSAKELEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLET  139 (338)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~  139 (338)
                      .+.++|++..+.+.+...||+|.||+||+|.|.| .||||+++... .....+.|.+|+..+++-+|.||+-+.|||...
T Consensus       382 ~s~~~WeIp~~ev~l~~rIGsGsFGtV~Rg~whG-dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p  460 (678)
T KOG0193|consen  382 DSLEEWEIPPEEVLLGERIGSGSFGTVYRGRWHG-DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNP  460 (678)
T ss_pred             ccccccccCHHHhhccceeccccccceeeccccc-ceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCC
Confidence            4557899999999999999999999999999965 68999998554 566789999999999999999999999999988


Q ss_pred             CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecC
Q 038823          140 PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDF  219 (338)
Q Consensus       140 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Df  219 (338)
                      .. .+|+-+|+|-+|+.++.....    .|+..+...|+.||+.|+.|||   .++|||||||..|||+.+++.|||+||
T Consensus       461 ~~-AIiTqwCeGsSLY~hlHv~et----kfdm~~~idIAqQiaqGM~YLH---AK~IIHrDLKSnNIFl~~~~kVkIgDF  532 (678)
T KOG0193|consen  461 PL-AIITQWCEGSSLYTHLHVQET----KFDMNTTIDIAQQIAQGMDYLH---AKNIIHRDLKSNNIFLHEDLKVKIGDF  532 (678)
T ss_pred             ce-eeeehhccCchhhhhccchhh----hhhHHHHHHHHHHHHHhhhhhh---hhhhhhhhccccceEEccCCcEEEecc
Confidence            76 999999999999999987664    7999999999999999999999   999999999999999999999999999


Q ss_pred             CCCcccCCCCceeeeecccccCCcccccccccC---CCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          220 SESISIPEGETHIITRSRFGAWTYSAPEYKRGG---VFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       220 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~---~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      |++.....-..........|...|||||+++..   +|++.+||||||+++|||+||..||..
T Consensus       533 GLatvk~~w~g~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi  595 (678)
T KOG0193|consen  533 GLATVKTRWSGEQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSI  595 (678)
T ss_pred             cceeeeeeeccccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCC
Confidence            998765433222222556688999999998753   599999999999999999999999983

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6e-44  Score=324.10  Aligned_cols=238  Identities=19%  Similarity=0.267  Sum_probs=197.3

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      ..|.....||+|+.|.||.|..  +++.||||.+.... ....+-+++|+.+|+..+|+|||.+++.+..++.+|.||||
T Consensus       273 ~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~-Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVMEy  351 (550)
T KOG0578|consen  273 SKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRK-QPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVMEY  351 (550)
T ss_pred             hhhcchhhhccccccceeeeeeccCCceEEEEEEEecc-CCchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEee
Confidence            3567778899999999999998  88899999998663 22336789999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      |+||+|.|.+...      .+++.++..|+.+++.||+|||   .++|+|||||.+|||++.+|.+||+|||++..+...
T Consensus       352 m~ggsLTDvVt~~------~~~E~qIA~Icre~l~aL~fLH---~~gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~  422 (550)
T KOG0578|consen  352 MEGGSLTDVVTKT------RMTEGQIAAICREILQGLKFLH---ARGIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEE  422 (550)
T ss_pred             cCCCchhhhhhcc------cccHHHHHHHHHHHHHHHHHHH---hcceeeeccccceeEeccCCcEEEeeeeeeeccccc
Confidence            9999999999765      5999999999999999999999   999999999999999999999999999999888765


Q ss_pred             CceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHHHHHHHh--------cC
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQ--------NN  300 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~~~~~~~--------~~  300 (338)
                      ...  ....+||+.|||||+.....|++|+||||||++++||+-|.+||-..++...   +.-.+.+-.+        ..
T Consensus       423 ~~K--R~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~PlrA---lyLIa~ng~P~lk~~~klS~  497 (550)
T KOG0578|consen  423 QSK--RSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRA---LYLIATNGTPKLKNPEKLSP  497 (550)
T ss_pred             cCc--cccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCCChHHH---HHHHhhcCCCCcCCccccCH
Confidence            542  2677899999999999999999999999999999999999999986544111   1111111110        02


Q ss_pred             ccccccccccccCcCCcccHHHH
Q 038823          301 RFTEIADPIIVQDLSCTETEHQF  323 (338)
Q Consensus       301 ~~~~~~d~~l~~~~~~~~~~~~~  323 (338)
                      .+++.+|.||..|...|.+..++
T Consensus       498 ~~kdFL~~cL~~dv~~RasA~eL  520 (550)
T KOG0578|consen  498 ELKDFLDRCLVVDVEQRASAKEL  520 (550)
T ss_pred             HHHHHHHHHhhcchhcCCCHHHH
Confidence            35566677777776666665443

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.3e-44  Score=331.23  Aligned_cols=205  Identities=16%  Similarity=0.167  Sum_probs=182.0

Q ss_pred             HHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccC-CcceeeeeeeeecCCc
Q 038823           67 EIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMD-HKHILKLIGCCLETPI  141 (338)
Q Consensus        67 ~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~  141 (338)
                      ...-++|...+.||+|+||.|+++..  +++.+|||.+++..  ...+.+..+.|.+++.... ||.++.++.+|++.++
T Consensus       364 ~~~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~  443 (694)
T KOG0694|consen  364 PLTLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEH  443 (694)
T ss_pred             cccccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCe
Confidence            34457899999999999999999999  78899999999875  5566788899999888875 9999999999999999


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCC
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSE  221 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~  221 (338)
                      +|+||||+.||++..++.. +     .+++..+..++++|+.||.|||   +.+||+||||.+|||||.+|++||+|||+
T Consensus       444 l~fvmey~~Ggdm~~~~~~-~-----~F~e~rarfyaAev~l~L~fLH---~~~IIYRDlKLdNiLLD~eGh~kiADFGl  514 (694)
T KOG0694|consen  444 LFFVMEYVAGGDLMHHIHT-D-----VFSEPRARFYAAEVVLGLQFLH---ENGIIYRDLKLDNLLLDTEGHVKIADFGL  514 (694)
T ss_pred             EEEEEEecCCCcEEEEEec-c-----cccHHHHHHHHHHHHHHHHHHH---hcCceeeecchhheEEcccCcEEeccccc
Confidence            9999999999995444432 2     6999999999999999999999   99999999999999999999999999999


Q ss_pred             CcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          222 SISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       222 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ++.......  .+....||+.|||||++.+..|+.++|+|||||+||||+.|.+||+..+.
T Consensus       515 cKe~m~~g~--~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddE  573 (694)
T KOG0694|consen  515 CKEGMGQGD--RTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDE  573 (694)
T ss_pred             ccccCCCCC--ccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCCH
Confidence            987653222  23778999999999999999999999999999999999999999996443

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.5e-43  Score=320.63  Aligned_cols=201  Identities=23%  Similarity=0.268  Sum_probs=178.8

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC----CchHHHHHHHHHHHHhccC-CcceeeeeeeeecCC
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY----SDSACKFSINNIVYAAQMD-HKHILKLIGCCLETP  140 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~----~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~  140 (338)
                      ...+.|...+.||+|+||.|+.|..  ++..||+|++....    .....+.+.+|+.+++.++ ||||++++.++....
T Consensus        14 ~~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~   93 (370)
T KOG0583|consen   14 LSIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPT   93 (370)
T ss_pred             cccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCC
Confidence            4456899999999999999999988  88999999776541    1123456678999999999 999999999999999


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC-CceEEecC
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE-NVAKLFDF  219 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~-~~~kl~Df  219 (338)
                      .+++||||+.||+|.+++.+.+     .+.+..+.+++.|+++|++|||   +.+|+||||||+|||++.+ +++||+||
T Consensus        94 ~~~ivmEy~~gGdL~~~i~~~g-----~l~E~~ar~~F~Qlisav~y~H---~~gi~HRDLK~ENilld~~~~~~Kl~DF  165 (370)
T KOG0583|consen   94 KIYIVMEYCSGGDLFDYIVNKG-----RLKEDEARKYFRQLISAVAYCH---SRGIVHRDLKPENILLDGNEGNLKLSDF  165 (370)
T ss_pred             eEEEEEEecCCccHHHHHHHcC-----CCChHHHHHHHHHHHHHHHHHH---hCCEeeCCCCHHHEEecCCCCCEEEecc
Confidence            9999999999999999998854     6899999999999999999999   9999999999999999999 99999999


Q ss_pred             CCCcccC-CCCceeeeecccccCCcccccccccCC-CC-ccchHHHHHHHHHHHHhCCCCcCC
Q 038823          220 SESISIP-EGETHIITRSRFGAWTYSAPEYKRGGV-FN-EKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       220 g~a~~~~-~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~-~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      |++.... ....   .....||+.|+|||++.+.. |+ .++||||+||+||.|++|+.||+.
T Consensus       166 G~s~~~~~~~~~---l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d  225 (370)
T KOG0583|consen  166 GLSAISPGEDGL---LKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDD  225 (370)
T ss_pred             ccccccCCCCCc---ccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCC
Confidence            9999874 2222   26678999999999999877 86 789999999999999999999986

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=3e-43  Score=313.92  Aligned_cols=201  Identities=17%  Similarity=0.237  Sum_probs=175.4

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      .|+..+.||+|+||.||+|..  +++.||+|.+....  .......+.+|+.++++++|+||+++++++.+.+..++|||
T Consensus         1 ~f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05631           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             CceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEE
Confidence            367788999999999999998  78999999987542  12233567899999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |+++|+|.+++.....   ..+++..+..++.|++.||.|||   +.+|+||||||+|||+++++.+||+|||++.....
T Consensus        81 ~~~~g~L~~~~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH---~~~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~  154 (285)
T cd05631          81 IMNGGDLKFHIYNMGN---PGFDEQRAIFYAAELCCGLEDLQ---RERIVYRDLKPENILLDDRGHIRISDLGLAVQIPE  154 (285)
T ss_pred             ecCCCcHHHHHHhhCC---CCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCC
Confidence            9999999988865432   25899999999999999999999   99999999999999999999999999999987644


Q ss_pred             CCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ....   ....||..|+|||++.+..++.++|||||||++|||++|+.||....
T Consensus       155 ~~~~---~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~  205 (285)
T cd05631         155 GETV---RGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRK  205 (285)
T ss_pred             CCee---cCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCC
Confidence            3322   34568999999999999999999999999999999999999998643

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=8.1e-44  Score=322.05  Aligned_cols=198  Identities=20%  Similarity=0.268  Sum_probs=182.5

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      ++|.+...||+|+||.||||+.  +.+.||+|.+.+.. .+++.+.+.+|+++++.++||||+.++++|....+.|+|+|
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte   81 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTE   81 (808)
T ss_pred             cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEeh
Confidence            5788889999999999999998  78899999997654 55677889999999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |+.| +|+.+|...+     .++++.+..++.++++||.|||   +.+|+|||+||.|||++..|.+|++|||+|+.+..
T Consensus        82 ~a~g-~L~~il~~d~-----~lpEe~v~~~a~~LVsaL~yLh---s~rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~  152 (808)
T KOG0597|consen   82 YAVG-DLFTILEQDG-----KLPEEQVRAIAYDLVSALYYLH---SNRILHRDMKPQNILLEKGGTLKLCDFGLARAMST  152 (808)
T ss_pred             hhhh-hHHHHHHhcc-----CCCHHHHHHHHHHHHHHHHHHH---hcCcccccCCcceeeecCCCceeechhhhhhhccc
Confidence            9995 9999998876     5999999999999999999999   99999999999999999999999999999998876


Q ss_pred             CCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      +..  ..+...||+-|||||...+..|+..+|.||+||++|||++|++||..
T Consensus       153 ~t~--vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a  202 (808)
T KOG0597|consen  153 NTS--VLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYA  202 (808)
T ss_pred             Cce--eeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchH
Confidence            432  23677899999999999999999999999999999999999999975

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7.8e-44  Score=326.82  Aligned_cols=215  Identities=19%  Similarity=0.281  Sum_probs=188.4

Q ss_pred             cccCHHHHHHhhcCCCcCCccccCCCceEEEEEE--C-C--eE-EEEEEeCc--CCCchHHHHHHHHHHHHhccCCccee
Q 038823           59 RIFSAKELEIATNNYDERKFIKQDSTYKLYKGFW--Q-E--RL-ISVMKYNE--SYSDSACKFSINNIVYAAQMDHKHIL  130 (338)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~-~--~~-vaik~~~~--~~~~~~~~~~~~e~~~l~~l~h~niv  130 (338)
                      +.+....|+...++-...+.||+|+||.||+|.+  . +  .. ||+|..+.  ........++++|++++++++|||||
T Consensus       145 ~PI~r~~Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVV  224 (474)
T KOG0194|consen  145 RPIPRQKWELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVV  224 (474)
T ss_pred             ccccccccEEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEE
Confidence            4456677888899999999999999999999999  2 2  23 89999885  24567789999999999999999999


Q ss_pred             eeeeeeecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC
Q 038823          131 KLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE  210 (338)
Q Consensus       131 ~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~  210 (338)
                      ++||++.....+++|||+|+||+|.++|.+.+.    .++..+++.++.+.|.||+|||   ++++|||||-++|+|++.
T Consensus       225 r~yGVa~~~~Pl~ivmEl~~gGsL~~~L~k~~~----~v~~~ek~~~~~~AA~Gl~YLh---~k~~IHRDIAARNcL~~~  297 (474)
T KOG0194|consen  225 RFYGVAVLEEPLMLVMELCNGGSLDDYLKKNKK----SLPTLEKLRFCYDAARGLEYLH---SKNCIHRDIAARNCLYSK  297 (474)
T ss_pred             EEEEEEcCCCccEEEEEecCCCcHHHHHHhCCC----CCCHHHHHHHHHHHHhHHHHHH---HCCCcchhHhHHHheecC
Confidence            999999999999999999999999999998864    6999999999999999999999   999999999999999999


Q ss_pred             CCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccC
Q 038823          211 ENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRT  282 (338)
Q Consensus       211 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~  282 (338)
                      ++.+||+|||+++....-.  .......-..+|+|||.+..+.++.++|||||||++||+++ |..||.....
T Consensus       298 ~~~vKISDFGLs~~~~~~~--~~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~  368 (474)
T KOG0194|consen  298 KGVVKISDFGLSRAGSQYV--MKKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMKN  368 (474)
T ss_pred             CCeEEeCccccccCCccee--eccccccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCCCH
Confidence            9999999999987764211  11112245679999999999999999999999999999999 8889997665

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=2.2e-42  Score=311.07  Aligned_cols=252  Identities=18%  Similarity=0.207  Sum_probs=193.8

Q ss_pred             hcCCCcCCccccCCCceEEEEEE------------------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceee
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW------------------QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILK  131 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~------------------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~  131 (338)
                      .++|.+.+.||+|+||.||+|.+                  ++..||+|.+...........+.+|+.++.+++||||++
T Consensus         4 ~~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~   83 (304)
T cd05096           4 RGHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIR   83 (304)
T ss_pred             hhhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeE
Confidence            35688889999999999999975                  233699999887655555678999999999999999999


Q ss_pred             eeeeeecCCcceEEEeecCCCCHHHhhhcCCC--------------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCee
Q 038823          132 LIGCCLETPIPILVFEYGEYTTLRDRIFGAPQ--------------PHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIV  197 (338)
Q Consensus       132 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~--------------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ii  197 (338)
                      +++++.+.+..++||||+++|+|.+++.....              .....+++..+++++.|++.||.|||   +.+|+
T Consensus        84 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~iv  160 (304)
T cd05096          84 LLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLS---SLNFV  160 (304)
T ss_pred             EEEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHH---HCCcc
Confidence            99999999999999999999999998865321              11125788999999999999999999   89999


Q ss_pred             ecCCCCCceeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh--CCC
Q 038823          198 FGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT--GQS  275 (338)
Q Consensus       198 H~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t--G~~  275 (338)
                      ||||||+|||++.++.+||+|||++................++..|+|||++..+.++.++||||||+++|||++  |..
T Consensus       161 H~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~  240 (304)
T cd05096         161 HRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQ  240 (304)
T ss_pred             ccCcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCCC
Confidence            999999999999999999999999986654433333344456889999999988889999999999999999987  556


Q ss_pred             CcCCccCCcccccHHHHHHHHHhcCccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          276 TRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       276 p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                      ||.....    ..+...+......... ...    ...     ...+...+.+++.+||+.+|
T Consensus       241 p~~~~~~----~~~~~~~~~~~~~~~~-~~~----~~~-----~~~~~~~~~~li~~cl~~~p  289 (304)
T cd05096         241 PYGELTD----EQVIENAGEFFRDQGR-QVY----LFR-----PPPCPQGLYELMLQCWSRDC  289 (304)
T ss_pred             CCCcCCH----HHHHHHHHHHhhhccc-ccc----ccC-----CCCCCHHHHHHHHHHccCCc
Confidence            7765433    1222222222221110 000    000     01123458889999999887

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=3.3e-43  Score=291.84  Aligned_cols=202  Identities=18%  Similarity=0.189  Sum_probs=179.8

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCch-HHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDS-ACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~-~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      ..|...+.||+|.||.||+|++  +|+.||||+++...... -.....+|++.|+.++|+||+.++++|...+.+.||+|
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfE   81 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFE   81 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEE
Confidence            3577788999999999999999  89999999998664322 23567899999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      ||+ .+|...+++...    .++..++..++.++++||+|||   .+.|+||||||.|+|++++|.+||+|||+|+....
T Consensus        82 fm~-tdLe~vIkd~~i----~l~pa~iK~y~~m~LkGl~y~H---~~~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~  153 (318)
T KOG0659|consen   82 FMP-TDLEVVIKDKNI----ILSPADIKSYMLMTLKGLAYCH---SKWILHRDLKPNNLLISSDGQLKIADFGLARFFGS  153 (318)
T ss_pred             ecc-ccHHHHhccccc----ccCHHHHHHHHHHHHHHHHHHH---hhhhhcccCCccceEEcCCCcEEeecccchhccCC
Confidence            999 899999988775    8999999999999999999999   99999999999999999999999999999999876


Q ss_pred             CCceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      .....  ...+-|..|.|||.+.+. .|+..+|+||.||++.||+-|.+-|+..++
T Consensus       154 p~~~~--~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sD  207 (318)
T KOG0659|consen  154 PNRIQ--THQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSD  207 (318)
T ss_pred             CCccc--ccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCch
Confidence            54432  333678999999988764 599999999999999999999998887655

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=1.9e-42  Score=308.39  Aligned_cols=206  Identities=19%  Similarity=0.295  Sum_probs=173.9

Q ss_pred             ccccCHHHHHHhhcCCCcCCccccCCCceEEEEEECCeEEEEEEeCcCCC--chHHHHHHHHHHHHhccCCcceeeeeee
Q 038823           58 YRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYS--DSACKFSINNIVYAAQMDHKHILKLIGC  135 (338)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~  135 (338)
                      ++.++.+++.     ......||+|++|.||+|.++|+.||+|.+.....  ....+.+.+|+.+|++++||||++++|+
T Consensus        12 ~~~i~~~~i~-----~~~~~~i~~g~~~~v~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~   86 (283)
T PHA02988         12 IKCIESDDID-----KYTSVLIKENDQNSIYKGIFNNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGF   86 (283)
T ss_pred             ceecCHHHcC-----CCCCeEEeeCCceEEEEEEECCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeee
Confidence            3445555552     33346799999999999999999999999976532  2224678899999999999999999999


Q ss_pred             eec----CCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CCeeecCCCCCceeeCC
Q 038823          136 CLE----TPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFP-RPIVFGNLISLCILFNE  210 (338)
Q Consensus       136 ~~~----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~-~~iiH~dik~~Nill~~  210 (338)
                      +.+    ....++||||+++|+|.+++....     .+++....+++.+++.||.|||   . .+++||||||+||++++
T Consensus        87 ~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~-----~~~~~~~~~i~~~i~~~l~~lH---~~~~~~Hrdlkp~nill~~  158 (283)
T PHA02988         87 IIDIVDDLPRLSLILEYCTRGYLREVLDKEK-----DLSFKTKLDMAIDCCKGLYNLY---KYTNKPYKNLTSVSFLVTE  158 (283)
T ss_pred             EEecccCCCceEEEEEeCCCCcHHHHHhhCC-----CCChhHHHHHHHHHHHHHHHHH---hcCCCCCCcCChhhEEECC
Confidence            876    346799999999999999997653     5899999999999999999999   6 48899999999999999


Q ss_pred             CCceEEecCCCCcccCCCCceeeeecccccCCccccccccc--CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          211 ENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRG--GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       211 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ++.+||+|||++.......     ....|+..|+|||.+.+  ..++.++|||||||++|||+||+.||....
T Consensus       159 ~~~~kl~dfg~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~  226 (283)
T PHA02988        159 NYKLKIICHGLEKILSSPP-----FKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLT  226 (283)
T ss_pred             CCcEEEcccchHhhhcccc-----ccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCC
Confidence            9999999999987654322     23457889999999876  679999999999999999999999998543

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=6.8e-43  Score=317.87  Aligned_cols=197  Identities=14%  Similarity=0.165  Sum_probs=176.1

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++|.+.+.||+|+||.||+|.+  +++.||+|.+....  .....+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus        18 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   97 (329)
T PTZ00263         18 SDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFLL   97 (329)
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEEE
Confidence            5688899999999999999999  68899999987542  2234567889999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++|+|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++....
T Consensus        98 e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~  169 (329)
T PTZ00263         98 EFVVGGELFTHLRKAG-----RFPNDVAKFYHAELVLAFEYLH---SKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVP  169 (329)
T ss_pred             cCCCCChHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHEEECCCCCEEEeeccCceEcC
Confidence            9999999999997654     5889999999999999999999   8999999999999999999999999999998765


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ...     ....||+.|+|||.+.+..++.++|||||||++|+|+||+.||...
T Consensus       170 ~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~  218 (329)
T PTZ00263        170 DRT-----FTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDD  218 (329)
T ss_pred             CCc-----ceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCC
Confidence            432     2346899999999999888999999999999999999999999753

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-42  Score=310.93  Aligned_cols=197  Identities=19%  Similarity=0.169  Sum_probs=175.4

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++|++.+.||+|+||.||+|..  +++.||+|.+....  .....+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   80 (291)
T cd05612           1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLM   80 (291)
T ss_pred             CCceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEE
Confidence            4688899999999999999999  68899999986432  2234466889999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++|+|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++....
T Consensus        81 e~~~~~~L~~~~~~~~-----~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~  152 (291)
T cd05612          81 EYVPGGELFSYLRNSG-----RFSNSTGLFYASEIVCALEYLH---SKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLR  152 (291)
T ss_pred             eCCCCCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHeEECCCCCEEEEecCcchhcc
Confidence            9999999999997654     5899999999999999999999   9999999999999999999999999999987664


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ...     ....||+.|+|||.+.+..++.++|||||||++|+|+||+.||...
T Consensus       153 ~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~  201 (291)
T cd05612         153 DRT-----WTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDD  201 (291)
T ss_pred             CCc-----ccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            322     3346899999999999888999999999999999999999999754

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=1.5e-42  Score=316.60  Aligned_cols=199  Identities=15%  Similarity=0.157  Sum_probs=175.6

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--C-CeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcce
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--Q-ERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~-~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      ..++|++.+.||+|+||.||+|.+  + +..||+|.+....  .....+.+.+|+.+++.++||||+++++++.+.+..+
T Consensus        28 ~~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~  107 (340)
T PTZ00426         28 KYEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLY  107 (340)
T ss_pred             ChhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEE
Confidence            345688899999999999999987  2 3689999986432  2334567889999999999999999999999999999


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      +||||+++|+|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++.
T Consensus       108 lv~Ey~~~g~L~~~i~~~~-----~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~~ikL~DFG~a~  179 (340)
T PTZ00426        108 LVLEFVIGGEFFTFLRRNK-----RFPNDVGCFYAAQIVLIFEYLQ---SLNIVYRDLKPENLLLDKDGFIKMTDFGFAK  179 (340)
T ss_pred             EEEeCCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeEccCCCHHHEEECCCCCEEEecCCCCe
Confidence            9999999999999997654     5899999999999999999999   9999999999999999999999999999998


Q ss_pred             ccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ......     ....||+.|+|||++.+..++.++|||||||++|||+||+.||...
T Consensus       180 ~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~  231 (340)
T PTZ00426        180 VVDTRT-----YTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYAN  231 (340)
T ss_pred             ecCCCc-----ceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCC
Confidence            664322     3456899999999998888999999999999999999999999754

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-43  Score=312.92  Aligned_cols=203  Identities=18%  Similarity=0.231  Sum_probs=185.8

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      ..|+...+||+|.||.||+|.+  .++.||+|++........++.+..|+.+|.+++++||.++||.+..+..++++|||
T Consensus        13 ~~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey   92 (467)
T KOG0201|consen   13 LLYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEY   92 (467)
T ss_pred             cccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHH
Confidence            4577779999999999999999  78999999999887778889999999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      |.||++.+.+....     .+++..+.-++.+++.||.|||   ..+.+|||||+.|||+..+|.+||+|||.+......
T Consensus        93 ~~gGsv~~lL~~~~-----~~~E~~i~~ilre~l~~l~ylH---~~~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~  164 (467)
T KOG0201|consen   93 CGGGSVLDLLKSGN-----ILDEFEIAVILREVLKGLDYLH---SEKKIHRDIKAANILLSESGDVKLADFGVAGQLTNT  164 (467)
T ss_pred             hcCcchhhhhccCC-----CCccceeeeehHHHHHHhhhhh---hcceecccccccceeEeccCcEEEEecceeeeeech
Confidence            99999999997764     4588888889999999999999   999999999999999999999999999999877654


Q ss_pred             CceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccCC
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTH  283 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~  283 (338)
                      ....  ...+||+.|||||++....|+.|+||||||++.+||++|.+|+....+.
T Consensus       165 ~~rr--~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPm  217 (467)
T KOG0201|consen  165 VKRR--KTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHPM  217 (467)
T ss_pred             hhcc--ccccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCcc
Confidence            3332  6778999999999999888999999999999999999999999877763

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=3.1e-42  Score=304.31  Aligned_cols=204  Identities=19%  Similarity=0.229  Sum_probs=175.2

Q ss_pred             hcCCCcCCccccCCCceEEEEEE-----CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW-----QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~-----~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      .++|++.+.||+|+||.||+|.+     .+..||+|.+...........+.+|+.++.+++||||+++++++..++..++
T Consensus         4 ~~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l   83 (266)
T cd05064           4 NKSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMI   83 (266)
T ss_pred             hHHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEE
Confidence            45688899999999999999986     3568999999876555556778999999999999999999999999999999


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ||||+++|+|.+++.....    .+++..++.++.|++.||+|||   +.+++||||||+||+++.++.++++|||.+..
T Consensus        84 v~e~~~~~~L~~~l~~~~~----~l~~~~~~~~~~~i~~al~~lH---~~~iiH~dikp~nili~~~~~~~l~dfg~~~~  156 (266)
T cd05064          84 VTEYMSNGALDSFLRKHEG----QLVAGQLMGMLPGLASGMKYLS---EMGYVHKGLAAHKVLVNSDLVCKISGFRRLQE  156 (266)
T ss_pred             EEEeCCCCcHHHHHHhCCC----CCCHHHHHHHHHHHHHHHHHHH---HCCEeeccccHhhEEEcCCCcEEECCCccccc
Confidence            9999999999999976543    6899999999999999999999   99999999999999999999999999998765


Q ss_pred             cCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          225 IPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       225 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      ....... ......++..|+|||.+.+..++.++|||||||++||+++ |+.||....
T Consensus       157 ~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~  213 (266)
T cd05064         157 DKSEAIY-TTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMS  213 (266)
T ss_pred             ccccchh-cccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCC
Confidence            4322211 1122335678999999998999999999999999999775 999997543

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=6.2e-42  Score=316.81  Aligned_cols=215  Identities=17%  Similarity=0.230  Sum_probs=180.1

Q ss_pred             HHHHHhhcCCCcCCccccCCCceEEEEEE-------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeee
Q 038823           64 KELEIATNNYDERKFIKQDSTYKLYKGFW-------QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGC  135 (338)
Q Consensus        64 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~  135 (338)
                      .++....++|++.+.||+|+||.||+|.+       ++..||+|++.........+.+.+|+.++..+ +||||++++++
T Consensus        28 ~~~~~~~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~  107 (375)
T cd05104          28 HKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGA  107 (375)
T ss_pred             cccccchHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeee
Confidence            35566677899999999999999999974       35579999987654444557789999999999 89999999999


Q ss_pred             eecCCcceEEEeecCCCCHHHhhhcCCCC---------------------------------------------------
Q 038823          136 CLETPIPILVFEYGEYTTLRDRIFGAPQP---------------------------------------------------  164 (338)
Q Consensus       136 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~---------------------------------------------------  164 (338)
                      |.+.+..++||||+++|+|.+++......                                                   
T Consensus       108 ~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  187 (375)
T cd05104         108 CTVGGPTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRR  187 (375)
T ss_pred             eccCCcceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCccccccccccccc
Confidence            99999999999999999999998653210                                                   


Q ss_pred             -------------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          165 -------------------HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       165 -------------------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                                         ....+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||++...
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~  264 (375)
T cd05104         188 SVRSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLA---SKNCIHRDLAARNILLTHGRITKICDFGLARDI  264 (375)
T ss_pred             ccccceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCchhhEEEECCCcEEEecCccceec
Confidence                               0125788999999999999999999   899999999999999999999999999999876


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      .............++..|+|||.+.+..++.++|||||||++|||++ |..||....
T Consensus       265 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~  321 (375)
T cd05104         265 RNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMP  321 (375)
T ss_pred             cCcccccccCCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCC
Confidence            54332222233345678999999999899999999999999999998 899997543

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-43  Score=315.80  Aligned_cols=208  Identities=15%  Similarity=0.207  Sum_probs=184.7

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-CcceeeeeeeeecCC-cceE
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCLETP-IPIL  144 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~-~~~l  144 (338)
                      ..++|...+.||.|.||.||+|+.  ++..||||++++.........-++|+..|++|+ ||||+++..++.+.+ .+++
T Consensus         8 ~m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~f   87 (538)
T KOG0661|consen    8 FMDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYF   87 (538)
T ss_pred             HHHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEee
Confidence            345688889999999999999998  888999999998765544444579999999999 999999999999888 8999


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      |||||+ .+|.+++++.+.    .|++..+..|+.||+.||+|+|   ..|+.|||+||+|||+..+..+||+|||+|+.
T Consensus        88 VfE~Md-~NLYqLmK~R~r----~fse~~irnim~QilqGL~hiH---k~GfFHRDlKPENiLi~~~~~iKiaDFGLARe  159 (538)
T KOG0661|consen   88 VFEFMD-CNLYQLMKDRNR----LFSESDIRNIMYQILQGLAHIH---KHGFFHRDLKPENILISGNDVIKIADFGLARE  159 (538)
T ss_pred             eHHhhh-hhHHHHHhhcCC----cCCHHHHHHHHHHHHHHHHHHH---hcCcccccCChhheEecccceeEecccccccc
Confidence            999999 799999998854    8999999999999999999999   99999999999999999899999999999998


Q ss_pred             cCCCCceeeeecccccCCcccccccc-cCCCCccchHHHHHHHHHHHHhCCCCcCCccCCcccc
Q 038823          225 IPEGETHIITRSRFGAWTYSAPEYKR-GGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVR  287 (338)
Q Consensus       225 ~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~  287 (338)
                      .....-+   +..+.|..|.|||++. .+.|+.+.|+||+||+++|+.+-++-|+..+..++..
T Consensus       160 v~SkpPY---TeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~  220 (538)
T KOG0661|consen  160 VRSKPPY---TEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIY  220 (538)
T ss_pred             cccCCCc---chhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHH
Confidence            8765544   6778999999999875 5679999999999999999999999999766544433

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=8.8e-44  Score=321.91  Aligned_cols=198  Identities=25%  Similarity=0.387  Sum_probs=178.0

Q ss_pred             HHHHHhhcCCCcCCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcce
Q 038823           64 KELEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        64 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      +.|++.-+..+.++-||.|+.|.||+|.+.++.||||+.+.-        -..+++-|++|+|+||+.+.|+|....-++
T Consensus       117 e~WeiPFe~IsELeWlGSGaQGAVF~Grl~netVAVKKV~el--------kETdIKHLRkLkH~NII~FkGVCtqsPcyC  188 (904)
T KOG4721|consen  117 ELWEIPFEEISELEWLGSGAQGAVFLGRLHNETVAVKKVREL--------KETDIKHLRKLKHPNIITFKGVCTQSPCYC  188 (904)
T ss_pred             hhccCCHHHhhhhhhhccCcccceeeeeccCceehhHHHhhh--------hhhhHHHHHhccCcceeeEeeeecCCceeE
Confidence            446666666667788999999999999999999999998632        235788899999999999999999999999


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      +|||||..|-|..+|+...     ++.......|..+||.|+.|||   ...|||||||+-|||+..+..+||+|||.++
T Consensus       189 IiMEfCa~GqL~~VLka~~-----~itp~llv~Wsk~IA~GM~YLH---~hKIIHRDLKSPNiLIs~~d~VKIsDFGTS~  260 (904)
T KOG4721|consen  189 IIMEFCAQGQLYEVLKAGR-----PITPSLLVDWSKGIAGGMNYLH---LHKIIHRDLKSPNILISYDDVVKISDFGTSK  260 (904)
T ss_pred             EeeeccccccHHHHHhccC-----ccCHHHHHHHHHHhhhhhHHHH---HhhHhhhccCCCceEeeccceEEeccccchH
Confidence            9999999999999998765     6899999999999999999999   9999999999999999999999999999998


Q ss_pred             ccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ......+.   -...||..|||||++.+.+.+.|+|||||||+||||+||..||...
T Consensus       261 e~~~~STk---MSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdV  314 (904)
T KOG4721|consen  261 ELSDKSTK---MSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDV  314 (904)
T ss_pred             hhhhhhhh---hhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCcccc
Confidence            87665332   4667999999999999999999999999999999999999999743

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=3.3e-42  Score=312.60  Aligned_cols=193  Identities=15%  Similarity=0.144  Sum_probs=170.0

Q ss_pred             CccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCC
Q 038823           77 KFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYT  152 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~g  152 (338)
                      +.||+|+||.||++..  +++.||+|++....  .......+.+|+.++++++||||+++++++...+..++||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~   80 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCC
Confidence            4699999999999998  78899999987542  2334567789999999999999999999999999999999999999


Q ss_pred             CHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCcee
Q 038823          153 TLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHI  232 (338)
Q Consensus       153 sL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~  232 (338)
                      +|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+||+++.++.+||+|||+++........ 
T Consensus        81 ~L~~~l~~~~-----~~~~~~~~~~~~qi~~~L~~lH---~~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~-  151 (323)
T cd05571          81 ELFFHLSRER-----VFSEDRARFYGAEIVSALGYLH---SCDVVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGAT-  151 (323)
T ss_pred             cHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---hCCeEeCCCCHHHEEECCCCCEEEeeCCCCcccccCCCc-
Confidence            9999987654     5899999999999999999999   999999999999999999999999999998754322111 


Q ss_pred             eeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          233 ITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       233 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                       .....||+.|+|||.+.+..++.++|||||||++|||+||+.||..
T Consensus       152 -~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~  197 (323)
T cd05571         152 -MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYN  197 (323)
T ss_pred             -ccceecCccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCC
Confidence             1345699999999999988899999999999999999999999975

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=6.4e-42  Score=311.76  Aligned_cols=199  Identities=17%  Similarity=0.179  Sum_probs=177.4

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      .++|++.+.||+|+||.||++.+  ++..+|+|.+...........+.+|++++++++|+||+++++++..++..++|||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   83 (331)
T cd06649           4 DDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   83 (331)
T ss_pred             cccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEee
Confidence            46899999999999999999999  6888999998765444555779999999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPR-PIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~-~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      |+++++|.+++....     .+++..+..++.|++.||.|||   +. +|+||||||+||+++.++.+||+|||++....
T Consensus        84 ~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~i~~~l~~lH---~~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  155 (331)
T cd06649          84 HMDGGSLDQVLKEAK-----RIPEEILGKVSIAVLRGLAYLR---EKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLI  155 (331)
T ss_pred             cCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHh---hcCCEEcCCCChhhEEEcCCCcEEEccCccccccc
Confidence            999999999997654     5899999999999999999999   64 69999999999999999999999999987654


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ....    ....||..|+|||++.+..++.++|||||||++|||+||+.||...
T Consensus       156 ~~~~----~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~  205 (331)
T cd06649         156 DSMA----NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPP  205 (331)
T ss_pred             cccc----ccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence            3321    3456899999999999888999999999999999999999999743

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=6.3e-42  Score=316.53  Aligned_cols=214  Identities=18%  Similarity=0.270  Sum_probs=179.3

Q ss_pred             HHHHhhcCCCcCCccccCCCceEEEEEE-------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeee
Q 038823           65 ELEIATNNYDERKFIKQDSTYKLYKGFW-------QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCC  136 (338)
Q Consensus        65 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~  136 (338)
                      .|....++|.+.+.||+|+||.||+|.+       ++..||+|.+...........+.+|+.+++.+ +|+||++++++|
T Consensus        32 ~~~~~~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~  111 (374)
T cd05106          32 KWEFPRDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGAC  111 (374)
T ss_pred             cccccHHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEe
Confidence            3455566899999999999999999985       23479999998664445557788999999999 899999999999


Q ss_pred             ecCCcceEEEeecCCCCHHHhhhcCCC-----------------------------------------------------
Q 038823          137 LETPIPILVFEYGEYTTLRDRIFGAPQ-----------------------------------------------------  163 (338)
Q Consensus       137 ~~~~~~~lv~e~~~~gsL~~~l~~~~~-----------------------------------------------------  163 (338)
                      .+.+..++||||+++|+|.+++.....                                                     
T Consensus       112 ~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (374)
T cd05106         112 THGGPVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSS  191 (374)
T ss_pred             cCCCCeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCccccc
Confidence            999999999999999999998864311                                                     


Q ss_pred             ------------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCce
Q 038823          164 ------------PHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH  231 (338)
Q Consensus       164 ------------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~  231 (338)
                                  ....++++..+.+++.||+.||.|||   +.+|+||||||+||++++++.+||+|||+++........
T Consensus       192 ~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH---~~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~  268 (374)
T cd05106         192 SQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLA---SKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNY  268 (374)
T ss_pred             cccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHH---HCCEEeccCchheEEEeCCCeEEEeeceeeeeccCCcce
Confidence                        00124788999999999999999999   899999999999999999999999999999776544332


Q ss_pred             eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          232 IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       232 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      .......++..|+|||++.+..++.++|||||||++|||++ |+.||....
T Consensus       269 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~  319 (374)
T cd05106         269 VVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGIL  319 (374)
T ss_pred             eeccCCCCccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCcccc
Confidence            22233345678999999988889999999999999999997 999997643

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=7.6e-42  Score=310.23  Aligned_cols=194  Identities=15%  Similarity=0.156  Sum_probs=170.0

Q ss_pred             CccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCC
Q 038823           77 KFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYT  152 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~g  152 (338)
                      +.||+|+||.||++..  ++..||+|.+....  .......+.+|+.+++.++||||+++++++...+..++||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCC
Confidence            4689999999999998  78899999997542  2334566788999999999999999999999999999999999999


Q ss_pred             CHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCcee
Q 038823          153 TLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHI  232 (338)
Q Consensus       153 sL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~  232 (338)
                      +|..++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||++......... 
T Consensus        81 ~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~-  151 (323)
T cd05595          81 ELFFHLSRER-----VFTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGAT-  151 (323)
T ss_pred             cHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHEEEcCCCCEEecccHHhccccCCCCc-
Confidence            9999887654     5899999999999999999999   899999999999999999999999999998754322211 


Q ss_pred             eeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          233 ITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       233 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                       .....||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus       152 -~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~  198 (323)
T cd05595         152 -MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ  198 (323)
T ss_pred             -cccccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCC
Confidence             13456899999999999889999999999999999999999999753

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.2e-42  Score=284.50  Aligned_cols=202  Identities=16%  Similarity=0.242  Sum_probs=180.7

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++|++.+.||+|.||.||.|+.  ++-.||+|++.+..  .......+.+|+++-+.|+||||+++|++|.+....||++
T Consensus        22 ~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyLil  101 (281)
T KOG0580|consen   22 DDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYLIL  101 (281)
T ss_pred             hhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEEEE
Confidence            5789999999999999999999  67789999987653  2223466889999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||...|+|...|.....   ..+++.....++.|+|.||.|+|   .+++|||||||+|+|++.++.+||+|||-+...+
T Consensus       102 Eya~~gel~k~L~~~~~---~~f~e~~~a~Yi~q~A~Al~y~h---~k~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p  175 (281)
T KOG0580|consen  102 EYAPRGELYKDLQEGRM---KRFDEQRAATYIKQLANALLYCH---LKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP  175 (281)
T ss_pred             EecCCchHHHHHHhccc---ccccccchhHHHHHHHHHHHHhc---cCCcccCCCCHHHhccCCCCCeeccCCCceeecC
Confidence            99999999999985443   36899999999999999999999   9999999999999999999999999999887766


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      .+..    ....||..|.+||...+...+.++|+|++|++.||++.|.+||.....
T Consensus       176 ~~kR----~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~  227 (281)
T KOG0580|consen  176 SNKR----KTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSH  227 (281)
T ss_pred             CCCc----eeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhhh
Confidence            4432    556799999999999999999999999999999999999999987553

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.3e-42  Score=309.31  Aligned_cols=191  Identities=20%  Similarity=0.178  Sum_probs=169.0

Q ss_pred             cccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCCCH
Q 038823           79 IKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTL  154 (338)
Q Consensus        79 lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL  154 (338)
                      ||+|+||.||+|..  ++..||+|.+....  .......+.+|+.++.+++||||+++++++.+.+..++||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L   80 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGEL   80 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcH
Confidence            79999999999998  67889999986532  334456788999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCceeee
Q 038823          155 RDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIIT  234 (338)
Q Consensus       155 ~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~  234 (338)
                      .+++....     .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++.........  .
T Consensus        81 ~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH---~~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~--~  150 (312)
T cd05585          81 FHHLQREG-----RFDLSRARFYTAELLCALENLH---KFNVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDK--T  150 (312)
T ss_pred             HHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---hCCeEeCCCCHHHeEECCCCcEEEEECcccccCccCCCc--c
Confidence            99997654     5899999999999999999999   999999999999999999999999999998764332211  1


Q ss_pred             ecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          235 RSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       235 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ....||+.|+|||.+.+..++.++|||||||++|||+||+.||..
T Consensus       151 ~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~  195 (312)
T cd05585         151 NTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYD  195 (312)
T ss_pred             ccccCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCC
Confidence            445689999999999988899999999999999999999999975

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.9e-42  Score=314.31  Aligned_cols=198  Identities=17%  Similarity=0.178  Sum_probs=176.7

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++|++.+.||+|+||.||+|.+  +++.||+|++....  .......+.+|+.++..++||||+++++++.+.+..++||
T Consensus         1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~   80 (333)
T cd05600           1 KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAM   80 (333)
T ss_pred             CCcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEE
Confidence            3688899999999999999999  68899999997542  2234567889999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++|+|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++....
T Consensus        81 e~~~g~~L~~~l~~~~-----~l~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~  152 (333)
T cd05600          81 EYVPGGDFRTLLNNLG-----VLSEDHARFYMAEMFEAVDALH---ELGYIHRDLKPENFLIDASGHIKLTDFGLSKGIV  152 (333)
T ss_pred             eCCCCCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEECCCCCEEEEeCcCCcccc
Confidence            9999999999997654     5899999999999999999999   8999999999999999999999999999987654


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ..     .....||+.|+|||++.+..++.++|||||||++|||++|+.||....
T Consensus       153 ~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~  202 (333)
T cd05600         153 TY-----ANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGST  202 (333)
T ss_pred             cc-----cCCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCC
Confidence            31     145568999999999998899999999999999999999999997543

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=1.1e-41  Score=309.70  Aligned_cols=194  Identities=15%  Similarity=0.140  Sum_probs=170.6

Q ss_pred             CccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCC
Q 038823           77 KFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYT  152 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~g  152 (338)
                      +.||+|+||.||++..  ++..||+|++....  .......+.+|+.+++.++||||+++++++...+..++||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g   80 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGG   80 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCC
Confidence            4689999999999998  78899999997542  2344567889999999999999999999999999999999999999


Q ss_pred             CHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCcee
Q 038823          153 TLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHI  232 (338)
Q Consensus       153 sL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~  232 (338)
                      +|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||++......... 
T Consensus        81 ~L~~~l~~~~-----~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~~-  151 (328)
T cd05593          81 ELFFHLSRER-----VFSEDRTRFYGAEIVSALDYLH---SGKIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAAT-  151 (328)
T ss_pred             CHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---hCCeEecccCHHHeEECCCCcEEEecCcCCccCCCcccc-
Confidence            9999887653     5899999999999999999999   999999999999999999999999999998754322111 


Q ss_pred             eeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          233 ITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       233 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                       .....||+.|+|||.+.+..++.++|||||||++|+|++|+.||...
T Consensus       152 -~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~  198 (328)
T cd05593         152 -MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ  198 (328)
T ss_pred             -cccccCCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCC
Confidence             13456899999999999888999999999999999999999999753

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=5.7e-42  Score=306.14  Aligned_cols=201  Identities=18%  Similarity=0.254  Sum_probs=173.2

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      ++|...+.||.|+||.||+|..  ++..||+|.+...........+.+|+.++++++||||+++++++.+.+..++||||
T Consensus         5 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~   84 (288)
T cd07871           5 ETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFEY   84 (288)
T ss_pred             ccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEeC
Confidence            4688899999999999999998  78899999987543333345678999999999999999999999999899999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      ++ ++|.+++.....    .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++......
T Consensus        85 ~~-~~l~~~l~~~~~----~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~  156 (288)
T cd07871          85 LD-SDLKQYLDNCGN----LMSMHNVKIFMFQLLRGLSYCH---KRKILHRDLKPQNLLINEKGELKLADFGLARAKSVP  156 (288)
T ss_pred             CC-cCHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCCCEEECcCcceeeccCC
Confidence            98 599998876543    5889999999999999999999   899999999999999999999999999998765432


Q ss_pred             CceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ...  .....++..|+|||.+.+ ..++.++||||+||++|+|+||++||....
T Consensus       157 ~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~  208 (288)
T cd07871         157 TKT--YSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGST  208 (288)
T ss_pred             Ccc--ccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            211  134567899999998865 458999999999999999999999997643

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=1.3e-41  Score=302.65  Aligned_cols=244  Identities=20%  Similarity=0.271  Sum_probs=195.0

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CC-----eEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcce
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QE-----RLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~-----~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      ++|++.+.||+|+||.||+|..  .+     ..|++|.+...........+.+|+.++.+++||||+++++++...+..+
T Consensus         5 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T cd05048           5 SAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTC   84 (283)
T ss_pred             HHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCceE
Confidence            4688899999999999999987  22     5799999876655555677899999999999999999999999988999


Q ss_pred             EEEeecCCCCHHHhhhcCCCCC-----------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPH-----------FEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN  212 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~-----------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~  212 (338)
                      ++|||+++++|.+++.......           ...+++..++.++.|++.||.|||   ..+++|+||||+||++++++
T Consensus        85 ~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH---~~~i~H~dlkp~Nil~~~~~  161 (283)
T cd05048          85 MLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLS---SHHFVHRDLAARNCLVGEGL  161 (283)
T ss_pred             EEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccccceEEEcCCC
Confidence            9999999999999997642211           135889999999999999999999   89999999999999999999


Q ss_pred             ceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccCCcccccHHH
Q 038823          213 VAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRTHGSVRHLIE  291 (338)
Q Consensus       213 ~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~~~~~~~l~~  291 (338)
                      .+||+|||++................+++.|+|||.+.+..++.++|||||||++|||++ |..||.....    ..+..
T Consensus       162 ~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~~----~~~~~  237 (283)
T cd05048         162 TVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSN----QEVIE  237 (283)
T ss_pred             cEEECCCcceeeccccccccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCCH----HHHHH
Confidence            999999999876544333222244556888999999988889999999999999999998 9999976433    12222


Q ss_pred             HHHHHHhcCccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          292 YLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       292 ~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                          .+..+.....             ...+..++.+|+.+||+.||
T Consensus       238 ----~i~~~~~~~~-------------~~~~~~~~~~l~~~c~~~~p  267 (283)
T cd05048         238 ----MIRSRQLLPC-------------PEDCPARVYALMIECWNEIP  267 (283)
T ss_pred             ----HHHcCCcCCC-------------cccCCHHHHHHHHHHccCCh
Confidence                1222211111             11234568899999999887

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=1.1e-41  Score=308.28  Aligned_cols=202  Identities=20%  Similarity=0.323  Sum_probs=174.2

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCe----EEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QER----LISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~----~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      .+|+..+.||+|+||.||+|.+  ++.    .||+|.+.........+.+.+|+.+++.++|+||++++|+|... ..++
T Consensus         7 ~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-~~~~   85 (316)
T cd05108           7 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQL   85 (316)
T ss_pred             hhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-Ccee
Confidence            4689999999999999999987  333    38999987654555567889999999999999999999999865 5789


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      |+||+++|+|.+++.....    .+++..++.++.||+.||.|||   +.+|+||||||+||+++.++.+||+|||+++.
T Consensus        86 v~e~~~~g~l~~~l~~~~~----~~~~~~~~~~~~qi~~~L~~LH---~~~iiH~dlkp~Nill~~~~~~kl~DfG~a~~  158 (316)
T cd05108          86 ITQLMPFGCLLDYVREHKD----NIGSQYLLNWCVQIAKGMNYLE---ERRLVHRDLAARNVLVKTPQHVKITDFGLAKL  158 (316)
T ss_pred             eeecCCCCCHHHHHHhccc----cCCHHHHHHHHHHHHHHHHHHH---hcCeeccccchhheEecCCCcEEEcccccccc
Confidence            9999999999999987543    5889999999999999999999   89999999999999999999999999999987


Q ss_pred             cCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          225 IPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       225 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      ..............++..|+|||++.+..++.++||||||+++|||+| |+.||...
T Consensus       159 ~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~  215 (316)
T cd05108         159 LGADEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI  215 (316)
T ss_pred             ccCCCcceeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCC
Confidence            765433322233345678999999998899999999999999999998 99999754

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=100.00  E-value=7.9e-44  Score=332.29  Aligned_cols=239  Identities=20%  Similarity=0.251  Sum_probs=205.7

Q ss_pred             cCCCcCCccccCCCceEEEEEE-----CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW-----QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~-----~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      +...+.+.||.|.||.||+|.+     ....||||.++....++...+|+.|+.+|.+++||||++|-|+.......++|
T Consensus       629 s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~PvMIi  708 (996)
T KOG0196|consen  629 SCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKPVMII  708 (996)
T ss_pred             hheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEEecCceeEEE
Confidence            3456778999999999999999     34679999999998888889999999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      +|||++|+|+.+|+.++.    .|++.+...++++|+.|+.||-   +.++|||||.+.|||++.+..+|++|||+++..
T Consensus       709 TEyMENGsLDsFLR~~DG----qftviQLVgMLrGIAsGMkYLs---dm~YVHRDLAARNILVNsnLvCKVsDFGLSRvl  781 (996)
T KOG0196|consen  709 TEYMENGSLDSFLRQNDG----QFTVIQLVGMLRGIASGMKYLS---DMNYVHRDLAARNILVNSNLVCKVSDFGLSRVL  781 (996)
T ss_pred             hhhhhCCcHHHHHhhcCC----ceEeehHHHHHHHHHHHhHHHh---hcCchhhhhhhhheeeccceEEEeccccceeec
Confidence            999999999999998875    6999999999999999999999   999999999999999999999999999999987


Q ss_pred             CCCC-ceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccCCcccccHHHHHHHHHhcCccc
Q 038823          226 PEGE-THIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRTHGSVRHLIEYLKNYLQNNRFT  303 (338)
Q Consensus       226 ~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~  303 (338)
                      .++. ....+..-.-..+|.|||.+...+++.+||||||||+|||.++ |.+||-.+.+    +++++            
T Consensus       782 edd~~~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdmSN----QdVIk------------  845 (996)
T KOG0196|consen  782 EDDPEAAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSN----QDVIK------------  845 (996)
T ss_pred             ccCCCccccccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCcccccch----HHHHH------------
Confidence            5543 2222222233579999999999999999999999999999777 9999876655    22221            


Q ss_pred             cccccccccCcCCcccHHHHHHHHHHHHHccCCC
Q 038823          304 EIADPIIVQDLSCTETEHQFQACARLTLECLNES  337 (338)
Q Consensus       304 ~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~  337 (338)
                           .+.++|+-.+.++|+..|.+||+.|||+|
T Consensus       846 -----aIe~gyRLPpPmDCP~aL~qLMldCWqkd  874 (996)
T KOG0196|consen  846 -----AIEQGYRLPPPMDCPAALYQLMLDCWQKD  874 (996)
T ss_pred             -----HHHhccCCCCCCCCcHHHHHHHHHHHHHH
Confidence                 22334444466788999999999999986

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-42  Score=313.17  Aligned_cols=248  Identities=17%  Similarity=0.201  Sum_probs=211.5

Q ss_pred             hcCCCcCCccccCCCceEEEEEECC-eEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFWQE-RLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~~~-~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      .+...+.++||+|.||.|.++...+ ..||+|++...........|.+|+++|.+|+||||++++|+|..++.+++|+||
T Consensus       537 Rs~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~EY  616 (807)
T KOG1094|consen  537 RSRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITEY  616 (807)
T ss_pred             hhheehhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHHH
Confidence            3455667899999999999999954 999999999988888889999999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      |++|+|.+++..+..+   .+......+|+.||++||+||.   +.++|||||.+.|+|+|.++++||+|||+++..-.+
T Consensus       617 mEnGDLnqFl~aheap---t~~t~~~vsi~tqiasgmaYLe---s~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg  690 (807)
T KOG1094|consen  617 MENGDLNQFLSAHELP---TAETAPGVSICTQIASGMAYLE---SLNFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSG  690 (807)
T ss_pred             HhcCcHHHHHHhccCc---ccccchhHHHHHHHHHHHHHHH---hhchhhccccccceeecCcccEEecCcccccccccC
Confidence            9999999999988541   2456677889999999999999   999999999999999999999999999999988888


Q ss_pred             CceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh--CCCCcCCccCCcccccHHHHHHHHHhcCcccccc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT--GQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIA  306 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t--G~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  306 (338)
                      +.+......+-..+|||||.+..++++.+||||+||+++||+++  ...||..+.+    +.+++-+..+...+...-.+
T Consensus       691 ~yy~vqgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~----e~vven~~~~~~~~~~~~~l  766 (807)
T KOG1094|consen  691 DYYRVQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTD----EQVVENAGEFFRDQGRQVVL  766 (807)
T ss_pred             CceeeecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhhH----HHHHHhhhhhcCCCCcceec
Confidence            77777677788999999999999999999999999999999876  7889987665    44555555555554433332


Q ss_pred             ccccccCcCCcccHHHHHHHHHHHHHccCCC
Q 038823          307 DPIIVQDLSCTETEHQFQACARLTLECLNES  337 (338)
Q Consensus       307 d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~  337 (338)
                      . +         ..-|...+.+++++||..|
T Consensus       767 ~-~---------P~~cp~~lyelml~Cw~~e  787 (807)
T KOG1094|consen  767 S-R---------PPACPQGLYELMLRCWRRE  787 (807)
T ss_pred             c-C---------CCcCcHHHHHHHHHHhchh
Confidence            1 1         1225557889999999865

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=2.4e-41  Score=301.76  Aligned_cols=202  Identities=18%  Similarity=0.241  Sum_probs=173.7

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      ++|++.+.||+|+||.||+|.+  +++.+|+|++.... .....+.+.+|+.++++++|+||+++++++...+..++|||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (287)
T cd07848           1 NKFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFE   80 (287)
T ss_pred             CCceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEe
Confidence            4688999999999999999999  67889999987543 23345678899999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |++++.+..+... ..    .+++..+..++.|++.||.|||   ..+|+||||||+||+++.++.+||+|||++.....
T Consensus        81 ~~~~~~l~~~~~~-~~----~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~  152 (287)
T cd07848          81 YVEKNMLELLEEM-PN----GVPPEKVRSYIYQLIKAIHWCH---KNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSE  152 (287)
T ss_pred             cCCCCHHHHHHhc-CC----CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCcEEEeeccCcccccc
Confidence            9998766654433 22    6899999999999999999999   89999999999999999999999999999987654


Q ss_pred             CCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ...... ....|+..|+|||++.+..++.++|||||||++|||++|++||....
T Consensus       153 ~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~  205 (287)
T cd07848         153 GSNANY-TEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGES  205 (287)
T ss_pred             cccccc-cccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCC
Confidence            322111 34568999999999988889999999999999999999999998643

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=2.3e-41  Score=307.09  Aligned_cols=199  Identities=19%  Similarity=0.211  Sum_probs=172.3

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcceEEE
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      +|.+.+.||+|+||.||+|..  ++..||+|.+.+..  .......+..|..++..+ +|++|+++++++.+.+..++||
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVM   80 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEE
Confidence            578889999999999999998  67799999987542  223345567788888777 5899999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++|+|.+.+....     .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++....
T Consensus        81 E~~~~g~L~~~~~~~~-----~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~  152 (323)
T cd05616          81 EYVNGGDLMYQIQQVG-----RFKEPHAVFYAAEIAIGLFFLH---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENM  152 (323)
T ss_pred             cCCCCCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCEEecCCCHHHeEECCCCcEEEccCCCceecC
Confidence            9999999999987654     5899999999999999999999   8999999999999999999999999999987543


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .....  .....||+.|+|||++.+..++.++|||||||++|||+||+.||...
T Consensus       153 ~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~  204 (323)
T cd05616         153 WDGVT--TKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE  204 (323)
T ss_pred             CCCCc--cccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCC
Confidence            22211  14456899999999999999999999999999999999999999754

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.3e-41  Score=301.77  Aligned_cols=200  Identities=18%  Similarity=0.241  Sum_probs=174.2

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      +|+..+.||+|+||.||++..  +++.||+|++....  .......+.+|+.+++.++|+||+++++++.+++..++|||
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEe
Confidence            477889999999999999998  68899999987542  12223557889999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |+++|+|.+++.....   ..+++..+..++.|++.||.|||   +.+++|+||||+||++++++.++|+|||++.....
T Consensus        81 ~~~~~~L~~~~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~  154 (285)
T cd05605          81 LMNGGDLKFHIYNMGN---PGFDEERAVFYAAEITCGLEDLH---RERIVYRDLKPENILLDDYGHIRISDLGLAVEIPE  154 (285)
T ss_pred             ccCCCcHHHHHHhcCc---CCCCHHHHHHHHHHHHHHHHHHH---HCCcEecCCCHHHEEECCCCCEEEeeCCCceecCC
Confidence            9999999988865432   25899999999999999999999   89999999999999999999999999999877643


Q ss_pred             CCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ....   ....|+..|+|||++.+..++.++||||||+++|||++|+.||...
T Consensus       155 ~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~  204 (285)
T cd05605         155 GETI---RGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQR  204 (285)
T ss_pred             CCcc---ccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCC
Confidence            3221   3446899999999998888999999999999999999999999754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=3e-41  Score=307.03  Aligned_cols=194  Identities=20%  Similarity=0.256  Sum_probs=169.1

Q ss_pred             CccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcceEEEeecCC
Q 038823           77 KFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIPILVFEYGEY  151 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~~~  151 (338)
                      +.||+|+||.||+|..  ++..||+|.+....  .......+.+|..++.++ +||||+++++++.+.+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~   80 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSG   80 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            4689999999999998  78899999997542  233446688899999988 699999999999999999999999999


Q ss_pred             CCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCce
Q 038823          152 TTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH  231 (338)
Q Consensus       152 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~  231 (338)
                      |+|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++.........
T Consensus        81 g~L~~~~~~~~-----~l~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~  152 (329)
T cd05588          81 GDLMFHMQRQR-----KLPEEHARFYSAEISLALNFLH---ERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGDT  152 (329)
T ss_pred             CCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEECCCCCEEECcCccccccccCCCc
Confidence            99999887653     5999999999999999999999   999999999999999999999999999998753221111


Q ss_pred             eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          232 IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       232 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                        .....||..|+|||++.+..++.++|+|||||++|+|+||+.||+..
T Consensus       153 --~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~  199 (329)
T cd05588         153 --TSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIV  199 (329)
T ss_pred             --cccccCCccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCcccc
Confidence              13456899999999999989999999999999999999999999753

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=2.5e-41  Score=306.96  Aligned_cols=199  Identities=21%  Similarity=0.227  Sum_probs=172.1

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCC-cceeeeeeeeecCCcceEEE
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDH-KHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h-~niv~l~~~~~~~~~~~lv~  146 (338)
                      +|++.+.||+|+||.||+|..  +++.||+|++....  .....+.+..|..++..+.| ++|+++++++.+.+..++||
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVM   80 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEE
Confidence            578889999999999999998  67789999987542  23345678889999999975 56888999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++|+|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++....
T Consensus        81 E~~~~g~L~~~~~~~~-----~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~  152 (324)
T cd05587          81 EYVNGGDLMYHIQQVG-----KFKEPHAVFYAAEIAIGLFFLH---SKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENI  152 (324)
T ss_pred             cCCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEEcCCCCEEEeecCcceecC
Confidence            9999999999987654     5899999999999999999999   8999999999999999999999999999986532


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .....  .....||..|+|||++.+..++.++|||||||++|||+||+.||...
T Consensus       153 ~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~  204 (324)
T cd05587         153 FGGKT--TRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGE  204 (324)
T ss_pred             CCCCc--eeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCC
Confidence            22111  13456899999999999988999999999999999999999999753

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=3.7e-41  Score=306.18  Aligned_cols=195  Identities=21%  Similarity=0.263  Sum_probs=169.8

Q ss_pred             CccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcceEEEeecCC
Q 038823           77 KFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIPILVFEYGEY  151 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~~~  151 (338)
                      +.||+|+||.||+|..  +++.+|+|.+....  .....+.+.+|..++.++ +|+||+++++++.+.+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNG   80 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence            4699999999999998  67889999997643  233456688999999888 599999999999999999999999999


Q ss_pred             CCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCce
Q 038823          152 TTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH  231 (338)
Q Consensus       152 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~  231 (338)
                      |+|..++....     .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++.........
T Consensus        81 ~~L~~~~~~~~-----~l~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~  152 (327)
T cd05617          81 GDLMFHMQRQR-----KLPEEHARFYAAEICIALNFLH---ERGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDT  152 (327)
T ss_pred             CcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEeCCCCEEEeccccceeccCCCCc
Confidence            99999887653     5999999999999999999999   899999999999999999999999999998753222111


Q ss_pred             eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          232 IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       232 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                        .....||+.|+|||++.+..++.++|||||||++|||+||+.||....
T Consensus       153 --~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~  200 (327)
T cd05617         153 --TSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIIT  200 (327)
T ss_pred             --eecccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccC
Confidence              134568999999999998899999999999999999999999997543

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=2.8e-41  Score=306.70  Aligned_cols=197  Identities=17%  Similarity=0.181  Sum_probs=168.7

Q ss_pred             CCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHH---hccCCcceeeeeeeeecCCcceEE
Q 038823           73 YDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYA---AQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l---~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      |.+.+.||+|+||.||+|.+  +++.||+|.+....  .....+.+.+|..++   +.++||||+++++++.+.+..++|
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv   80 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFV   80 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEE
Confidence            56678999999999999998  78899999997542  223345566676655   566799999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||+++++|...+...      .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++...
T Consensus        81 ~E~~~~~~L~~~~~~~------~l~~~~~~~~~~qi~~al~~lH---~~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~  151 (324)
T cd05589          81 MEYAAGGDLMMHIHTD------VFSEPRAVFYAACVVLGLQYLH---ENKIVYRDLKLDNLLLDTEGFVKIADFGLCKEG  151 (324)
T ss_pred             EcCCCCCcHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHH---hCCeEecCCCHHHeEECCCCcEEeCcccCCccC
Confidence            9999999999888542      5899999999999999999999   999999999999999999999999999998754


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ......  .....|++.|+|||.+.+..++.++|||||||++|||++|+.||...
T Consensus       152 ~~~~~~--~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~  204 (324)
T cd05589         152 MGFGDR--TSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGD  204 (324)
T ss_pred             CCCCCc--ccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCC
Confidence            322211  13456899999999999888999999999999999999999999754

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=5.9e-41  Score=305.60  Aligned_cols=200  Identities=16%  Similarity=0.180  Sum_probs=176.9

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ..++|+..+.||+|+||.||++.+  ++..+++|.+...........+.+|++++++++|+||+++++++.+.+..++||
T Consensus         3 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   82 (333)
T cd06650           3 KDDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICM   82 (333)
T ss_pred             chhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEE
Confidence            347899999999999999999999  678899998876544445567899999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFP-RPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~-~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      ||+++++|.+++....     .+++..+..++.+++.||.|||   + .+++|+||||+|||++.++.+||+|||++...
T Consensus        83 e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~l~~~l~~lH---~~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~  154 (333)
T cd06650          83 EHMDGGSLDQVLKKAG-----RIPEQILGKVSIAVIKGLTYLR---EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL  154 (333)
T ss_pred             ecCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---hcCCEEecCCChhhEEEcCCCCEEEeeCCcchhh
Confidence            9999999999997654     5889999999999999999999   6 47999999999999999999999999998765


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .....    ....|+..|+|||.+.+..++.++|||||||++|+|++|+.||...
T Consensus       155 ~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~  205 (333)
T cd06650         155 IDSMA----NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPP  205 (333)
T ss_pred             hhhcc----ccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence            43221    3446899999999998888999999999999999999999999753

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=2.4e-41  Score=314.38  Aligned_cols=213  Identities=17%  Similarity=0.255  Sum_probs=179.7

Q ss_pred             HHHHhhcCCCcCCccccCCCceEEEEEEC-------CeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-Ccceeeeeeee
Q 038823           65 ELEIATNNYDERKFIKQDSTYKLYKGFWQ-------ERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCC  136 (338)
Q Consensus        65 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~-------~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~  136 (338)
                      .+....+.|.+.++||+|+||.||+|++.       +..||+|++.........+.+.+|+.+++++. ||||++++++|
T Consensus        31 ~~~~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~  110 (400)
T cd05105          31 RWEFPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGAC  110 (400)
T ss_pred             ceeccccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEE
Confidence            45566788999999999999999999871       24699999976655555678999999999996 99999999999


Q ss_pred             ecCCcceEEEeecCCCCHHHhhhcCCCC----------------------------------------------------
Q 038823          137 LETPIPILVFEYGEYTTLRDRIFGAPQP----------------------------------------------------  164 (338)
Q Consensus       137 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~----------------------------------------------------  164 (338)
                      .+.+..++||||+++|+|.+++......                                                    
T Consensus       111 ~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (400)
T cd05105         111 TKSGPIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVP  190 (400)
T ss_pred             ccCCceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccch
Confidence            9999999999999999999988643110                                                    


Q ss_pred             ---------------------------------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCc
Q 038823          165 ---------------------------------------HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLC  205 (338)
Q Consensus       165 ---------------------------------------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~N  205 (338)
                                                             ....+++..+..++.|++.||.|||   ..+|+|+||||+|
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivH~dikp~N  267 (400)
T cd05105         191 MLEIKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLA---SKNCVHRDLAARN  267 (400)
T ss_pred             hhhhhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChHh
Confidence                                                   0124788899999999999999999   8999999999999


Q ss_pred             eeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          206 ILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       206 ill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      |+++.++.+||+|||++................++..|+|||.+.+..++.++|||||||++|||++ |..||...
T Consensus       268 ill~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~  343 (400)
T cd05105         268 VLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGM  343 (400)
T ss_pred             EEEeCCCEEEEEeCCcceeccccccccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCccc
Confidence            9999999999999999986644333222234456788999999988889999999999999999997 99999754

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=3.6e-41  Score=306.48  Aligned_cols=193  Identities=22%  Similarity=0.277  Sum_probs=168.3

Q ss_pred             CccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcceEEEeecCC
Q 038823           77 KFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIPILVFEYGEY  151 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~~~  151 (338)
                      +.||+|+||.||+|..  +++.+|+|.+.+..  .......+.+|+.++.++ +||||+++++++.+.+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~   80 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG   80 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCC
Confidence            4699999999999998  77899999997642  233456678899888776 799999999999999999999999999


Q ss_pred             CCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCce
Q 038823          152 TTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH  231 (338)
Q Consensus       152 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~  231 (338)
                      |+|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||+++........
T Consensus        81 ~~L~~~~~~~~-----~l~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~~  152 (329)
T cd05618          81 GDLMFHMQRQR-----KLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDT  152 (329)
T ss_pred             CCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEECCCCCEEEeeCCccccccCCCCc
Confidence            99999887653     5899999999999999999999   899999999999999999999999999998754322111


Q ss_pred             eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          232 IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       232 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                        .....||..|+|||++.+..++.++|||||||++|||+||+.||..
T Consensus       153 --~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~  198 (329)
T cd05618         153 --TSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDI  198 (329)
T ss_pred             --cccccCCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCcc
Confidence              1345689999999999998999999999999999999999999964

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=9.5e-42  Score=314.46  Aligned_cols=203  Identities=12%  Similarity=0.110  Sum_probs=176.0

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++|+..+.||+|+||+||+|..  +++.||+|++....  .......+.+|+.++.+++|+||+++++++.+.+..++||
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~   80 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIM   80 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEE
Confidence            4788999999999999999998  68899999997532  2233466788999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++|+|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||+++...
T Consensus        81 E~~~gg~L~~~l~~~~-----~l~~~~~~~~~~qi~~aL~~lH---~~givHrDlKp~NILi~~~~~vkL~DFGla~~~~  152 (363)
T cd05628          81 EFLPGGDMMTLLMKKD-----TLTEEETQFYIAETVLAIDSIH---QLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLK  152 (363)
T ss_pred             cCCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---hCCeEecCCCHHHeEECCCCCEEEeeccCccccc
Confidence            9999999999997654     5899999999999999999999   9999999999999999999999999999987543


Q ss_pred             CCCce---------------------------------eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhC
Q 038823          227 EGETH---------------------------------IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTG  273 (338)
Q Consensus       227 ~~~~~---------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG  273 (338)
                      .....                                 .......||+.|+|||++.+..++.++|||||||++|||++|
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G  232 (363)
T cd05628         153 KAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIG  232 (363)
T ss_pred             ccccccccccccccccccccccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhC
Confidence            21100                                 001234699999999999988899999999999999999999


Q ss_pred             CCCcCCcc
Q 038823          274 QSTRDLLR  281 (338)
Q Consensus       274 ~~p~~~~~  281 (338)
                      +.||....
T Consensus       233 ~~Pf~~~~  240 (363)
T cd05628         233 YPPFCSET  240 (363)
T ss_pred             CCCCCCCC
Confidence            99997543

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.3e-41  Score=313.69  Aligned_cols=203  Identities=14%  Similarity=0.138  Sum_probs=176.1

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++|++.+.||+|+||.||+|..  +++.||+|++....  .......+.+|+.++..++|+||+++++++.+++..++||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIM   80 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEE
Confidence            4788999999999999999999  78899999997532  2334466789999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++|+|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++....
T Consensus        81 E~~~~g~L~~~l~~~~-----~l~~~~~~~~~~qi~~aL~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~  152 (364)
T cd05599          81 EYLPGGDMMTLLMKKD-----TFTEEETRFYIAETILAIDSIH---KLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLK  152 (364)
T ss_pred             CCCCCcHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeEECCCCCEEEeecccceecc
Confidence            9999999999997654     5899999999999999999999   9999999999999999999999999999987543


Q ss_pred             CCCcee------------------------------------eeecccccCCcccccccccCCCCccchHHHHHHHHHHH
Q 038823          227 EGETHI------------------------------------ITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLEL  270 (338)
Q Consensus       227 ~~~~~~------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el  270 (338)
                      ......                                    ......||+.|+|||++....++.++|||||||++|||
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el  232 (364)
T cd05599         153 KSHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEM  232 (364)
T ss_pred             ccccccccccccccccccccccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHh
Confidence            211000                                    00124589999999999988899999999999999999


Q ss_pred             HhCCCCcCCcc
Q 038823          271 LTGQSTRDLLR  281 (338)
Q Consensus       271 ~tG~~p~~~~~  281 (338)
                      ++|+.||....
T Consensus       233 ~~G~~Pf~~~~  243 (364)
T cd05599         233 LVGYPPFCSDN  243 (364)
T ss_pred             hcCCCCCCCCC
Confidence            99999997543

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=2.9e-41  Score=313.15  Aligned_cols=202  Identities=14%  Similarity=0.102  Sum_probs=174.5

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      .|...+.||+|+||+||+|..  ++..||+|++....  .......+.+|+.++++++|+||+++++++.+.+..++|||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E   81 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEe
Confidence            588889999999999999998  78899999997542  23445678999999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |+++|+|.+++....     .+++..+..++.|++.||.|||   ..+|+||||||+|||++.++.+||+|||++.....
T Consensus        82 ~~~gg~L~~~l~~~~-----~~~e~~~~~~~~qi~~aL~~LH---~~givHrDlKp~Nili~~~~~~kL~DFGl~~~~~~  153 (381)
T cd05626          82 YIPGGDMMSLLIRME-----VFPEVLARFYIAELTLAIESVH---KMGFIHRDIKPDNILIDLDGHIKLTDFGLCTGFRW  153 (381)
T ss_pred             cCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCcHHHEEECCCCCEEEeeCcCCccccc
Confidence            999999999997654     5889999999999999999999   89999999999999999999999999998754311


Q ss_pred             CCc---------------------------------------------eeeeecccccCCcccccccccCCCCccchHHH
Q 038823          228 GET---------------------------------------------HIITRSRFGAWTYSAPEYKRGGVFNEKLDVYT  262 (338)
Q Consensus       228 ~~~---------------------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s  262 (338)
                      ...                                             ........||..|+|||.+.+..++.++||||
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwS  233 (381)
T cd05626         154 THNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWS  233 (381)
T ss_pred             ccccccccccccccccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccceee
Confidence            000                                             00012346999999999998888999999999


Q ss_pred             HHHHHHHHHhCCCCcCCcc
Q 038823          263 FSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       263 ~Gv~l~el~tG~~p~~~~~  281 (338)
                      |||++|||+||+.||....
T Consensus       234 lG~il~elltG~~Pf~~~~  252 (381)
T cd05626         234 VGVILFEMLVGQPPFLAPT  252 (381)
T ss_pred             hhhHHHHHHhCCCCCcCCC
Confidence            9999999999999997543

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.6e-42  Score=315.99  Aligned_cols=236  Identities=21%  Similarity=0.216  Sum_probs=196.8

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      -|..++.||.|+.|.|-+|++  +|+.+|||++.+..  .......+.+|+.+|+-+.|||++++|+++.+...+|+|.|
T Consensus        13 pwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvlE   92 (786)
T KOG0588|consen   13 PWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVLE   92 (786)
T ss_pred             ceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEEE
Confidence            477789999999999999999  99999999998763  33345667899999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |+++|.|++++-.++     ++++..+.+++.||+.|+.|+|   ..+|+|||+||+|+|||.++++||+|||+|..-..
T Consensus        93 yv~gGELFdylv~kG-----~l~e~eaa~ff~QIi~gv~yCH---~~~icHRDLKpENlLLd~~~nIKIADFGMAsLe~~  164 (786)
T KOG0588|consen   93 YVPGGELFDYLVRKG-----PLPEREAAHFFRQILDGVSYCH---AFNICHRDLKPENLLLDVKNNIKIADFGMASLEVP  164 (786)
T ss_pred             ecCCchhHHHHHhhC-----CCCCHHHHHHHHHHHHHHHHHh---hhcceeccCCchhhhhhcccCEeeeccceeecccC
Confidence            999999999998886     6999999999999999999999   99999999999999999999999999999987655


Q ss_pred             CCceeeeecccccCCcccccccccCCCC-ccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHHHHHHHhc------C
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGVFN-EKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQN------N  300 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~~~~~~~~------~  300 (338)
                      +.--   ...+|++.|.|||++++.+|+ .++||||.|||||.|+||+.||+..+    ...+..-++.-.-+      .
T Consensus       165 gklL---eTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDdN----ir~LLlKV~~G~f~MPs~Is~  237 (786)
T KOG0588|consen  165 GKLL---ETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDDN----IRVLLLKVQRGVFEMPSNISS  237 (786)
T ss_pred             Cccc---cccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCCcc----HHHHHHHHHcCcccCCCcCCH
Confidence            4332   566899999999999999975 78999999999999999999998432    23333322221111      2


Q ss_pred             ccccccccccccCcCCcccHHH
Q 038823          301 RFTEIADPIIVQDLSCTETEHQ  322 (338)
Q Consensus       301 ~~~~~~d~~l~~~~~~~~~~~~  322 (338)
                      ..++++..++..|+..|....+
T Consensus       238 eaQdLLr~ml~VDp~~RiT~~e  259 (786)
T KOG0588|consen  238 EAQDLLRRMLDVDPSTRITTEE  259 (786)
T ss_pred             HHHHHHHHHhccCccccccHHH
Confidence            3445666666677666655443

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-41  Score=300.15  Aligned_cols=208  Identities=20%  Similarity=0.178  Sum_probs=173.6

Q ss_pred             HHHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC-------------chHHHHHHHHHHHHhccCCcce
Q 038823           65 ELEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS-------------DSACKFSINNIVYAAQMDHKHI  129 (338)
Q Consensus        65 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~-------------~~~~~~~~~e~~~l~~l~h~ni  129 (338)
                      +-.+.-+.|.+.+.||+|.||.|-+|.+  ++..||||++.+...             ....+...+|+.+|++++|+||
T Consensus        91 ~~~k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nV  170 (576)
T KOG0585|consen   91 QDRKQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNV  170 (576)
T ss_pred             ccceehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCe
Confidence            3445668899999999999999999999  899999999965321             1124578899999999999999


Q ss_pred             eeeeeeeec--CCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCcee
Q 038823          130 LKLIGCCLE--TPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCIL  207 (338)
Q Consensus       130 v~l~~~~~~--~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nil  207 (338)
                      |+|+.+..+  .+.+|||+|||..|.+...=...     ..+++.++.+++.+++.||.|||   .++||||||||+|+|
T Consensus       171 V~LiEvLDDP~s~~~YlVley~s~G~v~w~p~d~-----~els~~~Ar~ylrDvv~GLEYLH---~QgiiHRDIKPsNLL  242 (576)
T KOG0585|consen  171 VKLIEVLDDPESDKLYLVLEYCSKGEVKWCPPDK-----PELSEQQARKYLRDVVLGLEYLH---YQGIIHRDIKPSNLL  242 (576)
T ss_pred             eEEEEeecCcccCceEEEEEeccCCccccCCCCc-----ccccHHHHHHHHHHHHHHHHHHH---hcCeeccccchhheE
Confidence            999999876  45799999999999886543222     13999999999999999999999   999999999999999


Q ss_pred             eCCCCceEEecCCCCcccCCCCc---eeeeecccccCCcccccccccCC----CCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          208 FNEENVAKLFDFSESISIPEGET---HIITRSRFGAWTYSAPEYKRGGV----FNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       208 l~~~~~~kl~Dfg~a~~~~~~~~---~~~~~~~~gt~~y~aPE~~~~~~----~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ++++|++||+|||.+...+....   .......+||+.|+|||.+.++.    .+.+.||||+||+||.|+.|+.||...
T Consensus       243 l~~~g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~  322 (576)
T KOG0585|consen  243 LSSDGTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDD  322 (576)
T ss_pred             EcCCCcEEeeccceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccc
Confidence            99999999999999886643211   11114478999999999987743    467899999999999999999999753

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=1.1e-41  Score=314.67  Aligned_cols=204  Identities=15%  Similarity=0.155  Sum_probs=175.2

Q ss_pred             HHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcc
Q 038823           67 EIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIP  142 (338)
Q Consensus        67 ~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~  142 (338)
                      ....++|++.+.||+|+||.||++..  ++..+|+|.+....  .......+.+|+.+++.++||||+++++++.+.+..
T Consensus        39 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~  118 (370)
T cd05596          39 RMKAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYL  118 (370)
T ss_pred             CCCHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence            34556899999999999999999998  78899999986431  223345678999999999999999999999999999


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSES  222 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a  222 (338)
                      ++||||+++|+|.+++...      .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++
T Consensus       119 ~lv~Ey~~gg~L~~~l~~~------~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~~~kL~DfG~~  189 (370)
T cd05596         119 YMVMEYMPGGDLVNLMSNY------DIPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADFGTC  189 (370)
T ss_pred             EEEEcCCCCCcHHHHHHhc------CCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEcCCCCEEEEeccce
Confidence            9999999999999998653      4788899999999999999999   899999999999999999999999999998


Q ss_pred             cccCCCCceeeeecccccCCcccccccccC----CCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          223 ISIPEGETHIITRSRFGAWTYSAPEYKRGG----VFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       223 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~----~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ......... ......||+.|+|||.+.+.    .++.++|||||||++|||++|+.||...
T Consensus       190 ~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~  250 (370)
T cd05596         190 MKMDANGMV-RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD  250 (370)
T ss_pred             eeccCCCcc-cCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCC
Confidence            765433221 11345699999999988653    4789999999999999999999999754

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=1.6e-41  Score=298.65  Aligned_cols=236  Identities=30%  Similarity=0.417  Sum_probs=187.0

Q ss_pred             CCccccCCCceEEEEEEC------CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeec
Q 038823           76 RKFIKQDSTYKLYKGFWQ------ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYG  149 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~~------~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  149 (338)
                      .+.||.|.||.||+|.+.      +..|+||.++........+.+.+|++.+++++||||++++|++...+..++||||+
T Consensus         4 ~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~~   83 (259)
T PF07714_consen    4 IKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEYC   83 (259)
T ss_dssp             EEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE--
T ss_pred             eeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeeccccccccccccccccccccccccccccccccc
Confidence            467999999999999995      67899999977655556788999999999999999999999999888899999999


Q ss_pred             CCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCC
Q 038823          150 EYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGE  229 (338)
Q Consensus       150 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~  229 (338)
                      ++|+|.+++.....   ..+++..++.++.||+.||.|||   +.+++|+||+++||++++++.+||+|||++.......
T Consensus        84 ~~g~L~~~L~~~~~---~~~~~~~~~~i~~~i~~~l~~Lh---~~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~  157 (259)
T PF07714_consen   84 PGGSLDDYLKSKNK---EPLSEQQRLSIAIQIAEALSYLH---SNNIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKS  157 (259)
T ss_dssp             TTEBHHHHHHHTCT---TTSBHHHHHHHHHHHHHHHHHHH---HTTEEEST-SGGGEEEETTTEEEEESTTTGEETTTSS
T ss_pred             cccccccccccccc---ccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccc
Confidence            99999999988722   26999999999999999999999   8899999999999999999999999999998774433


Q ss_pred             ceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccCCcccccHHHHHHHHHhcCcccccccc
Q 038823          230 THIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADP  308 (338)
Q Consensus       230 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~  308 (338)
                      .............|+|||.+....++.++||||||+++|||+| |+.||.....       .+..... .++...+. ..
T Consensus       158 ~~~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~~~-------~~~~~~~-~~~~~~~~-~~  228 (259)
T PF07714_consen  158 KYKNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDYDN-------EEIIEKL-KQGQRLPI-PD  228 (259)
T ss_dssp             SEEESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTSCH-------HHHHHHH-HTTEETTS-BT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccc-------ccccccc-ccccccee-cc
Confidence            3333344557789999999998889999999999999999999 7889875422       1222222 22221111 11


Q ss_pred             ccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          309 IIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       309 ~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                                  .+...+.+++.+||+.+|
T Consensus       229 ------------~~~~~~~~li~~C~~~~p  246 (259)
T PF07714_consen  229 ------------NCPKDIYSLIQQCWSHDP  246 (259)
T ss_dssp             ------------TSBHHHHHHHHHHT-SSG
T ss_pred             ------------chhHHHHHHHHHHcCCCh
Confidence                        122347889999999887

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=5.4e-41  Score=301.95  Aligned_cols=202  Identities=18%  Similarity=0.251  Sum_probs=173.4

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      .++|.+.+.||+|+||.||+|..  +++.||+|.+...........+.+|+.+++.++||||+++++++.+.+..++|||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e   83 (303)
T cd07869           4 ADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFE   83 (303)
T ss_pred             cccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEEE
Confidence            46799999999999999999999  7889999998755333333567889999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |++ ++|.+++.....    .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++.....
T Consensus        84 ~~~-~~l~~~~~~~~~----~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~  155 (303)
T cd07869          84 YVH-TDLCQYMDKHPG----GLHPENVKLFLFQLLRGLSYIH---QRYILHRDLKPQNLLISDTGELKLADFGLARAKSV  155 (303)
T ss_pred             CCC-cCHHHHHHhCCC----CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEECCCCcceeccC
Confidence            997 788888876543    6889999999999999999999   99999999999999999999999999999875433


Q ss_pred             CCceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ....  .....+|+.|+|||.+.+ ..++.++|||||||++|+|+||+.||....
T Consensus       156 ~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~  208 (303)
T cd07869         156 PSHT--YSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMK  208 (303)
T ss_pred             CCcc--CCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCc
Confidence            2211  134568899999998865 458899999999999999999999998643

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=3.9e-41  Score=305.58  Aligned_cols=194  Identities=18%  Similarity=0.177  Sum_probs=168.6

Q ss_pred             CccccCCCceEEEEEE-----CCeEEEEEEeCcCC---CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           77 KFIKQDSTYKLYKGFW-----QERLISVMKYNESY---SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~-----~~~~vaik~~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      +.||+|+||.||++..     .++.||+|.+....   .......+.+|+.+++.++||||+++++++..++..++||||
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~   81 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEY   81 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeC
Confidence            5799999999999986     56789999987532   223345678899999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      +++++|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||+++.....
T Consensus        82 ~~~~~L~~~~~~~~-----~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  153 (323)
T cd05584          82 LSGGELFMHLEREG-----IFMEDTACFYLSEISLALEHLH---QQGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHE  153 (323)
T ss_pred             CCCchHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCCEEEeeCcCCeecccC
Confidence            99999999997654     5888999999999999999999   899999999999999999999999999998754332


Q ss_pred             CceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ...  .....||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus       154 ~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~  203 (323)
T cd05584         154 GTV--THTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAE  203 (323)
T ss_pred             CCc--ccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCC
Confidence            221  13456899999999998888999999999999999999999999754

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=2.1e-41  Score=312.55  Aligned_cols=206  Identities=16%  Similarity=0.178  Sum_probs=177.0

Q ss_pred             HHHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCC
Q 038823           65 ELEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETP  140 (338)
Q Consensus        65 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~  140 (338)
                      ++....++|++.+.||+|+||.||++..  +++.+|+|.+.+..  .......+.+|+.+++.++||||+++++++.+++
T Consensus        37 ~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~  116 (370)
T cd05621          37 KLQMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDK  116 (370)
T ss_pred             hcCCCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC
Confidence            3445567899999999999999999999  67899999986431  2233456789999999999999999999999999


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                      ..++||||+++|+|.+++...      .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||
T Consensus       117 ~~~lv~Ey~~gg~L~~~l~~~------~~~~~~~~~~~~qil~aL~~LH---~~~IvHrDLKp~NILl~~~~~~kL~DFG  187 (370)
T cd05621         117 YLYMVMEYMPGGDLVNLMSNY------DVPEKWAKFYTAEVVLALDAIH---SMGLIHRDVKPDNMLLDKHGHLKLADFG  187 (370)
T ss_pred             EEEEEEcCCCCCcHHHHHHhc------CCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHEEECCCCCEEEEecc
Confidence            999999999999999999653      4788999999999999999999   9999999999999999999999999999


Q ss_pred             CCcccCCCCceeeeecccccCCcccccccccC----CCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          221 ESISIPEGETHIITRSRFGAWTYSAPEYKRGG----VFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~----~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ++......... ......||+.|+|||.+...    .++.++|||||||++|||+||+.||...
T Consensus       188 ~a~~~~~~~~~-~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~  250 (370)
T cd05621         188 TCMKMDETGMV-RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYAD  250 (370)
T ss_pred             cceecccCCce-ecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCC
Confidence            99876433221 11455699999999998653    3789999999999999999999999754

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=2e-41  Score=307.81  Aligned_cols=194  Identities=15%  Similarity=0.149  Sum_probs=169.5

Q ss_pred             CccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCC
Q 038823           77 KFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYT  152 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~g  152 (338)
                      +.||+|+||.||++..  ++..||+|.+....  .......+.+|+.++..++||||+++++++...+..++||||+++|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCC
Confidence            4689999999999998  78899999997542  2334567788999999999999999999999999999999999999


Q ss_pred             CHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCce
Q 038823          153 TLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFP-RPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH  231 (338)
Q Consensus       153 sL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~-~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~  231 (338)
                      +|.+++....     .+++..+..++.||+.||.|||   + .+|+||||||+|||++.++.+||+|||++.........
T Consensus        81 ~L~~~l~~~~-----~l~~~~~~~~~~qi~~aL~~lH---~~~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~  152 (325)
T cd05594          81 ELFFHLSRER-----VFSEDRARFYGAEIVSALDYLH---SEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGAT  152 (325)
T ss_pred             cHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---hcCCEEecCCCCCeEEECCCCCEEEecCCCCeecCCCCcc
Confidence            9999887654     5899999999999999999999   6 79999999999999999999999999998754322211


Q ss_pred             eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          232 IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       232 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                        .....||+.|+|||++.+..++.++|||||||++|+|+||+.||...
T Consensus       153 --~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~  199 (325)
T cd05594         153 --MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ  199 (325)
T ss_pred             --cccccCCcccCCHHHHccCCCCCccccccccceeeeeccCCCCCCCC
Confidence              13456899999999999889999999999999999999999999753

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=3.3e-41  Score=307.24  Aligned_cols=201  Identities=19%  Similarity=0.190  Sum_probs=172.1

Q ss_pred             CCCcCCccccCCCceEEEEEE-----CCeEEEEEEeCcCC---CchHHHHHHHHHHHHhccC-CcceeeeeeeeecCCcc
Q 038823           72 NYDERKFIKQDSTYKLYKGFW-----QERLISVMKYNESY---SDSACKFSINNIVYAAQMD-HKHILKLIGCCLETPIP  142 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~-----~~~~vaik~~~~~~---~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~  142 (338)
                      +|++.+.||+|+||.||++..     ++..||+|.+.+..   .....+.+..|+.++..++ |+||+++++++...+..
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKL   80 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEE
Confidence            478889999999999999886     57889999986431   2233466788999999995 99999999999999999


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSES  222 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a  222 (338)
                      ++||||+++|+|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||++
T Consensus        81 ~lv~e~~~~g~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH---~~~ivHrDlkp~Nili~~~~~~kl~DfG~~  152 (332)
T cd05614          81 HLILDYVSGGEMFTHLYQRD-----NFSEDEVRFYSGEIILALEHLH---KLGIVYRDIKLENILLDSEGHVVLTDFGLS  152 (332)
T ss_pred             EEEEeCCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCcEecCCCHHHeEECCCCCEEEeeCcCC
Confidence            99999999999999987654     5899999999999999999999   899999999999999999999999999998


Q ss_pred             cccCCCCceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          223 ISIPEGETHIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       223 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      +......... .....||..|+|||.+.+. .++.++|||||||++|||+||+.||....
T Consensus       153 ~~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~  211 (332)
T cd05614         153 KEFLSEEKER-TYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEG  211 (332)
T ss_pred             ccccccCCCc-cccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCC
Confidence            7654332211 1345689999999998765 47899999999999999999999997543

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=7.3e-41  Score=295.32  Aligned_cols=204  Identities=21%  Similarity=0.247  Sum_probs=177.3

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--C---CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--Q---ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~---~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      .++|+..+.||+|+||.||+|.+  .   ...|++|.+...........+.+|+.++++++|+||+++++++.+.+..++
T Consensus         3 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~i   82 (266)
T cd05033           3 PSYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMI   82 (266)
T ss_pred             hHHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEE
Confidence            46789999999999999999998  2   347899998766555556778999999999999999999999999999999


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ||||+++++|.+++.....    .+++..+..++.|++.||.|||   +.+|+|+||||+||++++++.++|+|||++..
T Consensus        83 v~e~~~~~~L~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~Lh---~~~i~H~di~p~nili~~~~~~~l~dfg~~~~  155 (266)
T cd05033          83 ITEYMENGSLDKFLRENDG----KFTVGQLVGMLRGIASGMKYLS---EMNYVHRDLAARNILVNSNLVCKVSDFGLSRR  155 (266)
T ss_pred             EEEcCCCCCHHHHHHhccC----CCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCCEEECccchhhc
Confidence            9999999999999976543    6899999999999999999999   89999999999999999999999999999987


Q ss_pred             cCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          225 IPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       225 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      ..............++..|+|||.+.+..++.++||||||+++|+|++ |..||...
T Consensus       156 ~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~  212 (266)
T cd05033         156 LEDSEATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDM  212 (266)
T ss_pred             ccccccceeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCC
Confidence            753222222233345678999999998889999999999999999998 99999653

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-41  Score=315.49  Aligned_cols=203  Identities=14%  Similarity=0.104  Sum_probs=174.3

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++|++.+.||+|+||.||++..  +++.||+|.+....  .....+.+.+|+.++++++||||+++++++.+.+..|+||
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~   80 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIM   80 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEE
Confidence            4688899999999999999998  78899999986432  2334567889999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++|+|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||+++...
T Consensus        81 E~~~gg~L~~~l~~~~-----~~~~~~~~~~~~ql~~aL~~LH---~~givHrDlkp~NIll~~~~~~kl~DfGla~~~~  152 (377)
T cd05629          81 EFLPGGDLMTMLIKYD-----TFSEDVTRFYMAECVLAIEAVH---KLGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFH  152 (377)
T ss_pred             eCCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEECCCCCEEEeecccccccc
Confidence            9999999999997653     5899999999999999999999   9999999999999999999999999999986332


Q ss_pred             CCCce---------------------------------------------eeeecccccCCcccccccccCCCCccchHH
Q 038823          227 EGETH---------------------------------------------IITRSRFGAWTYSAPEYKRGGVFNEKLDVY  261 (338)
Q Consensus       227 ~~~~~---------------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~  261 (338)
                      .....                                             .......||+.|+|||++.+..++.++|||
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Diw  232 (377)
T cd05629         153 KQHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWW  232 (377)
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCceeeE
Confidence            10000                                             000124699999999999988899999999


Q ss_pred             HHHHHHHHHHhCCCCcCCcc
Q 038823          262 TFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       262 s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ||||++|||+||++||....
T Consensus       233 SlGvil~elltG~~Pf~~~~  252 (377)
T cd05629         233 SLGAIMFECLIGWPPFCSEN  252 (377)
T ss_pred             ecchhhhhhhcCCCCCCCCC
Confidence            99999999999999997543

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=5.6e-41  Score=303.59  Aligned_cols=194  Identities=21%  Similarity=0.250  Sum_probs=166.4

Q ss_pred             CccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcceEEEeecCC
Q 038823           77 KFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIPILVFEYGEY  151 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~~~  151 (338)
                      +.||+|+||.||+|.+  ++..||+|.+....  .....+.+..|..++..+ +||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~g   80 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            3699999999999998  67889999987542  223345556677777654 799999999999999999999999999


Q ss_pred             CCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCce
Q 038823          152 TTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH  231 (338)
Q Consensus       152 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~  231 (338)
                      |+|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++.........
T Consensus        81 g~L~~~~~~~~-----~~~~~~~~~~~~qi~~al~~LH---~~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~~~  152 (316)
T cd05592          81 GDLMFHIQSSG-----RFDEARARFYAAEIICGLQFLH---KKGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEGK  152 (316)
T ss_pred             CcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCEEeCCCCHHHeEECCCCCEEEccCcCCeECCCCCCc
Confidence            99999987654     5899999999999999999999   899999999999999999999999999998764332211


Q ss_pred             eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          232 IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       232 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                        .....||+.|+|||.+.+..++.++|||||||++|||++|+.||...
T Consensus       153 --~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~  199 (316)
T cd05592         153 --ASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGE  199 (316)
T ss_pred             --cccccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCC
Confidence              14456899999999999888999999999999999999999999754

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=6.1e-41  Score=303.90  Aligned_cols=194  Identities=20%  Similarity=0.224  Sum_probs=168.6

Q ss_pred             CccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcceEEEeecCC
Q 038823           77 KFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIPILVFEYGEY  151 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~~~  151 (338)
                      +.||+|+||.||+|..  +++.||+|.+.+..  .....+.+..|..++..+ +||||+++++++.+.+..++||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~   80 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNG   80 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCC
Confidence            4689999999999998  67899999987542  233456678888888876 699999999999999999999999999


Q ss_pred             CCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCce
Q 038823          152 TTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH  231 (338)
Q Consensus       152 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~  231 (338)
                      |+|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++.........
T Consensus        81 g~L~~~i~~~~-----~l~~~~~~~~~~ql~~~L~~lH---~~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~~~  152 (320)
T cd05590          81 GDLMFHIQKSR-----RFDEARARFYAAEITSALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKT  152 (320)
T ss_pred             chHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCCCc
Confidence            99999887654     5899999999999999999999   999999999999999999999999999998754322211


Q ss_pred             eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          232 IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       232 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                        .....||+.|+|||.+.+..++.++|||||||++|||++|+.||...
T Consensus       153 --~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~  199 (320)
T cd05590         153 --TSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAE  199 (320)
T ss_pred             --ccccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCC
Confidence              13456899999999999888999999999999999999999999754

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=9e-41  Score=318.06  Aligned_cols=203  Identities=20%  Similarity=0.197  Sum_probs=174.9

Q ss_pred             CCCcCCccccCCCceEEEEEE--C-CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--Q-ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~-~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      .|.+.+.||+|++|.||+|..  + +..|++|.+... .......+.+|+.+|+.++||||+++++++...+..++||||
T Consensus        68 ~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~-~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~  146 (478)
T PTZ00267         68 MYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLN-DERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEY  146 (478)
T ss_pred             eEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccC-CHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEEC
Confidence            388889999999999999988  4 677888877544 334446778899999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      +++|+|.+++...... ..++++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++......
T Consensus       147 ~~gg~L~~~l~~~~~~-~~~l~~~~~~~i~~qi~~aL~~lH---~~~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~  222 (478)
T PTZ00267        147 GSGGDLNKQIKQRLKE-HLPFQEYEVGLLFYQIVLALDEVH---SRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDS  222 (478)
T ss_pred             CCCCCHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHH---hCCEEECCcCHHhEEECCCCcEEEEeCcCceecCCc
Confidence            9999999988643211 126899999999999999999999   899999999999999999999999999999876543


Q ss_pred             CceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ..........||+.|+|||++.+..++.++|||||||++|||+||+.||..
T Consensus       223 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~  273 (478)
T PTZ00267        223 VSLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKG  273 (478)
T ss_pred             cccccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCC
Confidence            322222455699999999999988999999999999999999999999975

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=1.7e-40  Score=294.84  Aligned_cols=211  Identities=21%  Similarity=0.270  Sum_probs=177.1

Q ss_pred             HHhhcCCCcCCccccCCCceEEEEEEC-------CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecC
Q 038823           67 EIATNNYDERKFIKQDSTYKLYKGFWQ-------ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLET  139 (338)
Q Consensus        67 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~-------~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~  139 (338)
                      ...+++|+..+.||+|+||.||+|.+.       +..||+|++...........+.+|+.+++.++|+||+++++++.++
T Consensus         2 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~   81 (277)
T cd05062           2 EVAREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQG   81 (277)
T ss_pred             cccHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCC
Confidence            346778999999999999999999862       4579999987554444456788999999999999999999999999


Q ss_pred             CcceEEEeecCCCCHHHhhhcCCCC-----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCce
Q 038823          140 PIPILVFEYGEYTTLRDRIFGAPQP-----HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVA  214 (338)
Q Consensus       140 ~~~~lv~e~~~~gsL~~~l~~~~~~-----~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~  214 (338)
                      ...++||||+++++|.+++......     ....+++..+..++.|++.||.|||   +.+++|+||||+||++++++.+
T Consensus        82 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~~vH~dlkp~Nil~~~~~~~  158 (277)
T cd05062          82 QPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTV  158 (277)
T ss_pred             CCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCcchheEEEcCCCCE
Confidence            9999999999999999998653210     0124688899999999999999999   8999999999999999999999


Q ss_pred             EEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          215 KLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       215 kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      +|+|||++................++..|+|||++.+..++.++|||||||++|||++ |..||...
T Consensus       159 ~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~  225 (277)
T cd05062         159 KIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGM  225 (277)
T ss_pred             EECCCCCccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCC
Confidence            9999999876654433222223345778999999988889999999999999999999 78898754

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=4.4e-41  Score=306.83  Aligned_cols=212  Identities=20%  Similarity=0.307  Sum_probs=176.5

Q ss_pred             HHHhhcCCCcCCccccCCCceEEEEEE-------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeeee
Q 038823           66 LEIATNNYDERKFIKQDSTYKLYKGFW-------QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCCL  137 (338)
Q Consensus        66 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~-------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~  137 (338)
                      |..+.++|.+.+.||+|+||.||+|..       +++.||+|++.........+.+..|+.++.++ +|+||++++++|.
T Consensus         2 ~~~~~~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~   81 (337)
T cd05054           2 WEFPRDRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACT   81 (337)
T ss_pred             cccCHHHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEe
Confidence            344566799999999999999999975       24689999987654444556788999999999 7999999999886


Q ss_pred             c-CCcceEEEeecCCCCHHHhhhcCCCC----------------------------------------------------
Q 038823          138 E-TPIPILVFEYGEYTTLRDRIFGAPQP----------------------------------------------------  164 (338)
Q Consensus       138 ~-~~~~~lv~e~~~~gsL~~~l~~~~~~----------------------------------------------------  164 (338)
                      . +...+++|||+++++|.+++......                                                    
T Consensus        82 ~~~~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (337)
T cd05054          82 KPGGPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEE  161 (337)
T ss_pred             cCCCCEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchh
Confidence            4 45688999999999999988643210                                                    


Q ss_pred             ----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCceeeeeccccc
Q 038823          165 ----HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA  240 (338)
Q Consensus       165 ----~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt  240 (338)
                          ....+++..+.+++.||+.||.|||   +.+|+||||||+||+++.++.++|+|||++................++
T Consensus       162 ~~~~~~~~l~~~~~~~~~~qi~~aL~~lH---~~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~  238 (337)
T cd05054         162 GDELYKEPLTLEDLISYSFQVARGMEFLA---SRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLP  238 (337)
T ss_pred             hhHHhhcCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCC
Confidence                0126899999999999999999999   899999999999999999999999999999876544332222344567


Q ss_pred             CCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       241 ~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      ..|+|||++.+..++.++|||||||++|||++ |..||...
T Consensus       239 ~~y~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~  279 (337)
T cd05054         239 LKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGV  279 (337)
T ss_pred             ccccCcHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCC
Confidence            78999999999999999999999999999998 99999753

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=1.1e-40  Score=297.86  Aligned_cols=202  Identities=16%  Similarity=0.221  Sum_probs=168.2

Q ss_pred             cCCCcCCccccCCCceEEEEEE---CCeEEEEEEeCcCCC-chHHHHHHHHHHHHhcc---CCcceeeeeeeee-----c
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW---QERLISVMKYNESYS-DSACKFSINNIVYAAQM---DHKHILKLIGCCL-----E  138 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~---~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l---~h~niv~l~~~~~-----~  138 (338)
                      ++|.+.+.||+|+||.||+|..   ++..||+|.+..... ......+.+|+.+++.+   +||||++++++|.     .
T Consensus         1 ~~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~   80 (290)
T cd07862           1 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDR   80 (290)
T ss_pred             CCcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCC
Confidence            3688899999999999999987   467899998865432 22234566777777665   6999999999885     2


Q ss_pred             CCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEec
Q 038823          139 TPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFD  218 (338)
Q Consensus       139 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~D  218 (338)
                      ...+++||||++ ++|.+++.....   ..+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|
T Consensus        81 ~~~~~lv~e~~~-~~l~~~~~~~~~---~~~~~~~~~~i~~qi~~aL~~lH---~~~iiH~dlkp~Nil~~~~~~~kl~D  153 (290)
T cd07862          81 ETKLTLVFEHVD-QDLTTYLDKVPE---PGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLAD  153 (290)
T ss_pred             CCcEEEEEccCC-CCHHHHHHhCCC---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEEcCCCCEEEcc
Confidence            446899999998 699999876432   25899999999999999999999   89999999999999999999999999


Q ss_pred             CCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          219 FSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       219 fg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ||++........   .....||..|+|||.+.+..++.++|||||||++|||++|++||.....
T Consensus       154 fg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~  214 (290)
T cd07862         154 FGLARIYSFQMA---LTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSD  214 (290)
T ss_pred             ccceEeccCCcc---cccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCH
Confidence            999976544321   1445689999999999888899999999999999999999999986543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.9e-41  Score=310.91  Aligned_cols=203  Identities=17%  Similarity=0.157  Sum_probs=178.5

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++|.+.+.||+|+||.||+|..  +++.||+|++....  .......+.+|+.++..++|+||+++++++.+++..++||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVM   80 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEE
Confidence            4688899999999999999999  68999999997542  2234567889999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++++|.+++....     .+++..+..++.|++.||.|||   ..+|+||||||+||+++.++.+||+|||++....
T Consensus        81 e~~~~~~L~~~l~~~~-----~l~~~~~~~i~~qi~~aL~~LH---~~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~  152 (350)
T cd05573          81 EYMPGGDLMNLLIRKD-----VFPEETARFYIAELVLALDSVH---KLGFIHRDIKPDNILIDADGHIKLADFGLCKKMN  152 (350)
T ss_pred             cCCCCCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCCCEEeecCCCCccCc
Confidence            9999999999998763     6899999999999999999999   8999999999999999999999999999987665


Q ss_pred             CCC---------------------------ceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          227 EGE---------------------------THIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       227 ~~~---------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ...                           .........||+.|+|||.+.+..++.++|||||||++|||++|+.||..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~  232 (350)
T cd05573         153 KAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYS  232 (350)
T ss_pred             ccCcccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCC
Confidence            432                           00112345689999999999999999999999999999999999999986


Q ss_pred             cc
Q 038823          280 LR  281 (338)
Q Consensus       280 ~~  281 (338)
                      ..
T Consensus       233 ~~  234 (350)
T cd05573         233 DT  234 (350)
T ss_pred             CC
Confidence            43

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=3.8e-41  Score=311.05  Aligned_cols=208  Identities=14%  Similarity=0.160  Sum_probs=178.7

Q ss_pred             HHHHHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeec
Q 038823           63 AKELEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLE  138 (338)
Q Consensus        63 ~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~  138 (338)
                      ..++....++|++.+.||+|+||.||++..  +++.+|+|.+....  .......+.+|+.+++.++||||+++++++.+
T Consensus        35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~  114 (371)
T cd05622          35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD  114 (371)
T ss_pred             HhhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEc
Confidence            345566678999999999999999999999  78899999986431  22334567889999999999999999999999


Q ss_pred             CCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEec
Q 038823          139 TPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFD  218 (338)
Q Consensus       139 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~D  218 (338)
                      ++..++||||+++|+|.+++...      .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|
T Consensus       115 ~~~~~lv~Ey~~gg~L~~~~~~~------~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDLkp~NIll~~~~~ikL~D  185 (371)
T cd05622         115 DRYLYMVMEYMPGGDLVNLMSNY------DVPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLAD  185 (371)
T ss_pred             CCEEEEEEcCCCCCcHHHHHHhc------CCCHHHHHHHHHHHHHHHHHHH---HCCEEeCCCCHHHEEECCCCCEEEEe
Confidence            99999999999999999998653      4788999999999999999999   99999999999999999999999999


Q ss_pred             CCCCcccCCCCceeeeecccccCCcccccccccC----CCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          219 FSESISIPEGETHIITRSRFGAWTYSAPEYKRGG----VFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       219 fg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~----~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ||++.......... .....||+.|+|||++...    .++.++|||||||++|||++|+.||...
T Consensus       186 fG~a~~~~~~~~~~-~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~  250 (371)
T cd05622         186 FGTCMKMNKEGMVR-CDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD  250 (371)
T ss_pred             CCceeEcCcCCccc-ccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCC
Confidence            99998765432211 1355699999999998653    3789999999999999999999999753

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=7.8e-41  Score=303.59  Aligned_cols=199  Identities=20%  Similarity=0.218  Sum_probs=172.2

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccC-CcceeeeeeeeecCCcceEEE
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMD-HKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~  146 (338)
                      +|+..+.||+|+||.||+|..  +++.||+|++....  .....+.+..|..++..+. |++|+++++++.+.+..++||
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVM   80 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEE
Confidence            477789999999999999998  78899999987542  2334466788999988886 678888999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++|+|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++....
T Consensus        81 Ey~~~g~L~~~i~~~~-----~l~~~~~~~i~~qi~~al~~lH---~~~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~  152 (323)
T cd05615          81 EYVNGGDLMYHIQQVG-----KFKEPQAVFYAAEISVGLFFLH---RRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHM  152 (323)
T ss_pred             cCCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCCCEEEeccccccccC
Confidence            9999999999987654     5999999999999999999999   8999999999999999999999999999987643


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .....  .....||+.|+|||++.+..++.++|||||||++|||+||+.||...
T Consensus       153 ~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~  204 (323)
T cd05615         153 VDGVT--TRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGE  204 (323)
T ss_pred             CCCcc--ccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCC
Confidence            32211  13456899999999999888999999999999999999999999754

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=2e-40  Score=294.95  Aligned_cols=196  Identities=15%  Similarity=0.208  Sum_probs=168.8

Q ss_pred             cccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCCCH
Q 038823           79 IKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTL  154 (338)
Q Consensus        79 lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL  154 (338)
                      ||+|+||+||++..  +++.+|+|.+....  .....+.+..|+.+++.++|+||+++.+++...+..++||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L   80 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDL   80 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCH
Confidence            69999999999998  78899999987542  122345678899999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCceeee
Q 038823          155 RDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIIT  234 (338)
Q Consensus       155 ~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~  234 (338)
                      .+++...... ...+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++.........  .
T Consensus        81 ~~~~~~~~~~-~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~--~  154 (280)
T cd05608          81 RYHIYNVDEE-NPGFPEPRACFYTAQIISGLEHLH---QRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSK--T  154 (280)
T ss_pred             HHHHHhcccc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEeeCccceecCCCCcc--c
Confidence            9887543211 126899999999999999999999   899999999999999999999999999998766543322  1


Q ss_pred             ecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          235 RSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       235 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ....||+.|+|||.+.+..++.++||||||+++|||++|+.||...
T Consensus       155 ~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~  200 (280)
T cd05608         155 KGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRAR  200 (280)
T ss_pred             cccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence            3456899999999999999999999999999999999999999753

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=5.6e-41  Score=304.32  Aligned_cols=195  Identities=18%  Similarity=0.200  Sum_probs=168.8

Q ss_pred             CccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcceEEEeecCC
Q 038823           77 KFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIPILVFEYGEY  151 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~~~  151 (338)
                      +.||+|+||.||+|..  +++.||+|.+....  .....+.+..|..++..+ +||||+++++++.+.+..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   80 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNG   80 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCC
Confidence            4699999999999998  67899999987542  233446677899988866 799999999999999999999999999


Q ss_pred             CCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCce
Q 038823          152 TTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH  231 (338)
Q Consensus       152 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~  231 (338)
                      |+|.+.+....     .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++.........
T Consensus        81 ~~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~  152 (321)
T cd05591          81 GDLMFQIQRSR-----KFDEPRSRFYAAEVTLALMFLH---RHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVT  152 (321)
T ss_pred             CcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCCCEEEeecccceecccCCcc
Confidence            99999887654     5899999999999999999999   899999999999999999999999999998754332211


Q ss_pred             eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          232 IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       232 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                        .....||..|+|||++.+..++.++|||||||++|||+||+.||....
T Consensus       153 --~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~  200 (321)
T cd05591         153 --TTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADN  200 (321)
T ss_pred             --ccccccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCCC
Confidence              134568999999999998889999999999999999999999998543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=4.8e-41  Score=311.89  Aligned_cols=202  Identities=13%  Similarity=0.095  Sum_probs=173.8

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      .|+..+.||+|+||.||+|..  ++..+|+|++....  .......+.+|+.++++++|+||+++++++.+.+..++|||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E   81 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD   81 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEe
Confidence            588899999999999999998  78899999987542  23345678899999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |+++|+|.+++.+..     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||++.....
T Consensus        82 ~~~gg~L~~~l~~~~-----~~~e~~~~~~~~qi~~al~~lH---~~~ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~  153 (382)
T cd05625          82 YIPGGDMMSLLIRMG-----IFPEDLARFYIAELTCAVESVH---KMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRW  153 (382)
T ss_pred             CCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEEeECCCCccccc
Confidence            999999999997653     5889999999999999999999   89999999999999999999999999999753210


Q ss_pred             CC---------------------------------------------ceeeeecccccCCcccccccccCCCCccchHHH
Q 038823          228 GE---------------------------------------------THIITRSRFGAWTYSAPEYKRGGVFNEKLDVYT  262 (338)
Q Consensus       228 ~~---------------------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s  262 (338)
                      ..                                             .........||+.|+|||++.+..++.++||||
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwS  233 (382)
T cd05625         154 THDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWS  233 (382)
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEe
Confidence            00                                             000012346899999999999888999999999


Q ss_pred             HHHHHHHHHhCCCCcCCcc
Q 038823          263 FSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       263 ~Gv~l~el~tG~~p~~~~~  281 (338)
                      |||++|||+||++||....
T Consensus       234 lGvil~elltG~~Pf~~~~  252 (382)
T cd05625         234 VGVILYEMLVGQPPFLAQT  252 (382)
T ss_pred             chHHHHHHHhCCCCCCCCC
Confidence            9999999999999997643

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=2.3e-40  Score=294.20  Aligned_cols=209  Identities=24%  Similarity=0.304  Sum_probs=178.0

Q ss_pred             hcCCCcCCccccCCCceEEEEEE-C------CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcc
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW-Q------ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIP  142 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~-~------~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~  142 (338)
                      .++|.+.+.||+|+||.||+|.. +      +..||+|.+.........+.+.+|++++++++|+||+++++++......
T Consensus         4 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   83 (280)
T cd05049           4 RDTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDPP   83 (280)
T ss_pred             hHHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCe
Confidence            35688889999999999999987 2      3679999998765554567899999999999999999999999999999


Q ss_pred             eEEEeecCCCCHHHhhhcCCC---------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCc
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQ---------PHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENV  213 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~---------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~  213 (338)
                      ++||||+++++|.+++...+.         .....+++..+..++.|++.||.|||   ..+++|+||||+||+++.++.
T Consensus        84 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH---~~~i~h~dlkp~nili~~~~~  160 (280)
T cd05049          84 IMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLA---SQHFVHRDLATRNCLVGYDLV  160 (280)
T ss_pred             EEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHh---hCCeeccccccceEEEcCCCe
Confidence            999999999999999976431         11235889999999999999999999   899999999999999999999


Q ss_pred             eEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          214 AKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       214 ~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      +||+|||++................++..|+|||++.+..++.++||||||+++|||++ |..||....
T Consensus       161 ~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~  229 (280)
T cd05049         161 VKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLS  229 (280)
T ss_pred             EEECCcccceecccCcceecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCC
Confidence            99999999876543332222234446788999999999999999999999999999999 999997543

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=3.8e-40  Score=292.93  Aligned_cols=195  Identities=17%  Similarity=0.239  Sum_probs=172.7

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      ++|+..+.||+|+||.||+|.+  +++.+|+|.+...........+.+|++++++++||||+++++++...+..++||||
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   80 (279)
T cd06619           1 QDIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEF   80 (279)
T ss_pred             CcchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEec
Confidence            3577889999999999999998  78899999987654445557789999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      +++++|..+.         .+++..+..++.|++.||.|||   +.+|+|+||||+||+++.++.++|+|||++......
T Consensus        81 ~~~~~l~~~~---------~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~  148 (279)
T cd06619          81 MDGGSLDVYR---------KIPEHVLGRIAVAVVKGLTYLW---SLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNS  148 (279)
T ss_pred             CCCCChHHhh---------cCCHHHHHHHHHHHHHHHHHHH---HCCEeeCCCCHHHEEECCCCCEEEeeCCcceecccc
Confidence            9999997542         4788899999999999999999   999999999999999999999999999998765433


Q ss_pred             CceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ..    ....|+..|+|||++.+..++.++|+||||+++|+|++|+.||....
T Consensus       149 ~~----~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~  197 (279)
T cd06619         149 IA----KTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQ  197 (279)
T ss_pred             cc----cCCCCChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhc
Confidence            21    34568999999999998889999999999999999999999997543

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=1.5e-40  Score=295.67  Aligned_cols=203  Identities=17%  Similarity=0.284  Sum_probs=171.6

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCe----EEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QER----LISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~----~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      ++|...+.||+|+||.||+|.+  ++.    .+++|.+...........+..|+..++++.||||+++++++.. ...++
T Consensus         7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~-~~~~~   85 (279)
T cd05111           7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICPG-ASLQL   85 (279)
T ss_pred             hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEECC-CccEE
Confidence            3577789999999999999998  444    4778887654344445678888989999999999999999864 45789


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ++||+++|+|.+++.....    .+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||.++.
T Consensus        86 i~e~~~~gsL~~~l~~~~~----~~~~~~~~~i~~qi~~~l~~lH---~~~iiH~dlkp~nili~~~~~~kl~Dfg~~~~  158 (279)
T cd05111          86 VTQLSPLGSLLDHVRQHRD----SLDPQRLLNWCVQIAKGMYYLE---EHRMVHRNLAARNILLKSDSIVQIADFGVADL  158 (279)
T ss_pred             EEEeCCCCcHHHHHHhccc----CCCHHHHHHHHHHHHHHHHHHH---HCCEeccccCcceEEEcCCCcEEEcCCcccee
Confidence            9999999999999976543    6899999999999999999999   89999999999999999999999999999986


Q ss_pred             cCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          225 IPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       225 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      ..............++..|+|||.+.++.++.++||||||+++|||+| |+.||....
T Consensus       159 ~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~  216 (279)
T cd05111         159 LYPDDKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMR  216 (279)
T ss_pred             ccCCCcccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCC
Confidence            654332222234457788999999988889999999999999999998 999997543

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=1.5e-40  Score=316.98  Aligned_cols=212  Identities=18%  Similarity=0.169  Sum_probs=179.8

Q ss_pred             HHHHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCC
Q 038823           64 KELEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETP  140 (338)
Q Consensus        64 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~  140 (338)
                      .+.....++|.+.+.||+|+||+||+|..  +++.||+|.+.... .......+.+|+..+..++|+||++++..+...+
T Consensus        25 ~~~~~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~  104 (496)
T PTZ00283         25 ATAKEQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKD  104 (496)
T ss_pred             ccccccCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceeccc
Confidence            34456678999999999999999999998  78999999986543 4455567889999999999999999988775432


Q ss_pred             --------cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC
Q 038823          141 --------IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN  212 (338)
Q Consensus       141 --------~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~  212 (338)
                              ..++||||+++|+|.+++...... ...+++..+..++.|++.||.|||   +.+|+||||||+|||++.++
T Consensus       105 ~~~~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~-~~~l~e~~~~~i~~qll~aL~~lH---~~~IiHrDLKP~NILl~~~~  180 (496)
T PTZ00283        105 PRNPENVLMIALVLDYANAGDLRQEIKSRAKT-NRTFREHEAGLLFIQVLLAVHHVH---SKHMIHRDIKSANILLCSNG  180 (496)
T ss_pred             ccCcccceEEEEEEeCCCCCcHHHHHHHhhcc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEeCCC
Confidence                    268999999999999998754321 136899999999999999999999   89999999999999999999


Q ss_pred             ceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          213 VAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       213 ~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      .+||+|||+++...............||+.|+|||++.+..++.++|||||||++|||++|+.||..
T Consensus       181 ~vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~  247 (496)
T PTZ00283        181 LVKLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDG  247 (496)
T ss_pred             CEEEEecccCeeccccccccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence            9999999999876543222222455799999999999998999999999999999999999999975

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=1.4e-40  Score=291.17  Aligned_cols=197  Identities=20%  Similarity=0.252  Sum_probs=169.0

Q ss_pred             CccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCCCH
Q 038823           77 KFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTL  154 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL  154 (338)
                      +.||+|+||.||+|.+  +++.+++|.+...........+.+|++++++++|+||+++++++...+..++||||+++++|
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDF   80 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCcH
Confidence            3689999999999998  78899999987654555567799999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCceeee
Q 038823          155 RDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIIT  234 (338)
Q Consensus       155 ~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~  234 (338)
                      .+++.....    .+++..++.++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||.+............
T Consensus        81 ~~~~~~~~~----~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~  153 (252)
T cd05084          81 LTFLRTEGP----RLKVKELIQMVENAAAGMEYLE---SKHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTG  153 (252)
T ss_pred             HHHHHhCCC----CCCHHHHHHHHHHHHHHHHHHH---hCCccccccchheEEEcCCCcEEECccccCcccccccccccC
Confidence            999975442    5899999999999999999999   899999999999999999999999999998765432211111


Q ss_pred             ecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          235 RSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       235 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      .....+..|+|||.+.++.++.++||||||+++|||++ |..||...
T Consensus       154 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~  200 (252)
T cd05084         154 GMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANL  200 (252)
T ss_pred             CCCCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccc
Confidence            12223457999999988889999999999999999998 88998753

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=8.1e-41  Score=307.17  Aligned_cols=195  Identities=18%  Similarity=0.201  Sum_probs=167.2

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      ++|+..+.||+|+||.||+|.+  +++.||+|.+...........+.+|+.+++.++|+||+++++++.+.+..++||||
T Consensus        74 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  153 (353)
T PLN00034         74 SELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEF  153 (353)
T ss_pred             HHHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEec
Confidence            4566778999999999999998  68899999997654445557789999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      +++|+|.+..         ..++..+..++.||+.||.|||   +.+|+||||||+|||+++++.+||+|||++......
T Consensus       154 ~~~~~L~~~~---------~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~  221 (353)
T PLN00034        154 MDGGSLEGTH---------IADEQFLADVARQILSGIAYLH---RRHIVHRDIKPSNLLINSAKNVKIADFGVSRILAQT  221 (353)
T ss_pred             CCCCcccccc---------cCCHHHHHHHHHHHHHHHHHHH---HCCEeecCCCHHHEEEcCCCCEEEcccccceecccc
Confidence            9999986532         4567888899999999999999   899999999999999999999999999999876433


Q ss_pred             CceeeeecccccCCcccccccccC-----CCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGG-----VFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~-----~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ...  .....||..|+|||++...     ..+.++|||||||++|||++|+.||..
T Consensus       222 ~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~  275 (353)
T PLN00034        222 MDP--CNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGV  275 (353)
T ss_pred             ccc--ccccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCC
Confidence            211  1345689999999987432     245689999999999999999999974

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=2e-41  Score=289.37  Aligned_cols=202  Identities=16%  Similarity=0.223  Sum_probs=175.6

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchH-HHHHHHHHHHHhccCCcceeeeeeeeec--CCcceEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSA-CKFSINNIVYAAQMDHKHILKLIGCCLE--TPIPILV  145 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~~lv  145 (338)
                      ++|...+.|++|+||.||+|++  ++..||+|+++-...... --..++|+.+|.+++|||||.+-.+...  -+.+|+|
T Consensus        76 ~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy~V  155 (419)
T KOG0663|consen   76 EEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKIYIV  155 (419)
T ss_pred             HHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccceeeee
Confidence            3577789999999999999999  899999999975532222 2346899999999999999999877653  4569999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      ||||+ -+|.+++..-.+    +|...+...+..|+++|+.|||   ...|+||||||+|+|+++.|.+||+|||+|+.+
T Consensus       156 Me~~E-hDLksl~d~m~q----~F~~~evK~L~~QlL~glk~lH---~~wilHRDLK~SNLLm~~~G~lKiaDFGLAR~y  227 (419)
T KOG0663|consen  156 MEYVE-HDLKSLMETMKQ----PFLPGEVKTLMLQLLRGLKHLH---DNWILHRDLKTSNLLLSHKGILKIADFGLAREY  227 (419)
T ss_pred             HHHHH-hhHHHHHHhccC----CCchHHHHHHHHHHHHHHHHHh---hceeEecccchhheeeccCCcEEecccchhhhh
Confidence            99999 699999987764    7999999999999999999999   999999999999999999999999999999998


Q ss_pred             CCCCceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      +......  +..+-|..|.|||.+.+. .|+...|+||+|||+.||+++++-|+....
T Consensus       228 gsp~k~~--T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE  283 (419)
T KOG0663|consen  228 GSPLKPY--TPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKSE  283 (419)
T ss_pred             cCCcccC--cceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCch
Confidence            8763322  556789999999998875 499999999999999999999999987544

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=3.3e-41  Score=306.92  Aligned_cols=203  Identities=14%  Similarity=0.125  Sum_probs=177.1

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++|++.+.||+|+||.||++..  +++.||+|.+....  .....+.+.+|+.+++.++|+||+++++++.+.+..++||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVM   80 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEE
Confidence            4688899999999999999998  78899999997542  2234566889999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++|+|.+++.....    .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++....
T Consensus        81 e~~~~~~L~~~l~~~~~----~l~~~~~~~~~~qi~~aL~~lH---~~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~  153 (330)
T cd05601          81 EYQPGGDLLSLLNRYED----QFDEDMAQFYLAELVLAIHSVH---QMGYVHRDIKPENVLIDRTGHIKLADFGSAARLT  153 (330)
T ss_pred             CCCCCCCHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHH---HCCeEcccCchHheEECCCCCEEeccCCCCeECC
Confidence            99999999999987643    6999999999999999999999   9999999999999999999999999999998765


Q ss_pred             CCCceeeeecccccCCcccccccc------cCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKR------GGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ..... ......||+.|+|||++.      ...++.++|||||||++|||++|+.||....
T Consensus       154 ~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~  213 (330)
T cd05601         154 ANKMV-NSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGT  213 (330)
T ss_pred             CCCce-eeecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCCCC
Confidence            44332 224456899999999986      4567899999999999999999999997543

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=4e-40  Score=289.00  Aligned_cols=200  Identities=18%  Similarity=0.225  Sum_probs=172.4

Q ss_pred             cCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeec
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYG  149 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  149 (338)
                      ++|++.+.||+|+||.||++.+ ++..+++|.+....  .....+.+|+.++++++||||+++++++.+.+..++||||+
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~   81 (256)
T cd05114           4 SELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGA--MSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFM   81 (256)
T ss_pred             HHcEEeeEecCCcCceEEEEEeccCceEEEEecccCC--ccHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcC
Confidence            4588889999999999999999 66689999876442  22357889999999999999999999999999999999999


Q ss_pred             CCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCC
Q 038823          150 EYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGE  229 (338)
Q Consensus       150 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~  229 (338)
                      ++|+|.+++.....    .+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.+||+|||.++......
T Consensus        82 ~~~~L~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~  154 (256)
T cd05114          82 ENGCLLNYLRQRQG----KLSKDMLLSMCQDVCEGMEYLE---RNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDE  154 (256)
T ss_pred             CCCcHHHHHHhCcc----CCCHHHHHHHHHHHHHHHHHHH---HCCccccccCcceEEEcCCCeEEECCCCCccccCCCc
Confidence            99999999875432    5899999999999999999999   8999999999999999999999999999987654332


Q ss_pred             ceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          230 THIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       230 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      ... .....++..|+|||.+.+..++.++|+||||+++|||++ |+.||...
T Consensus       155 ~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~  205 (256)
T cd05114         155 YTS-SSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKK  205 (256)
T ss_pred             eec-cCCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCC
Confidence            221 123345678999999988889999999999999999999 99999754

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=9.3e-41  Score=292.68  Aligned_cols=215  Identities=22%  Similarity=0.224  Sum_probs=184.8

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      -++|...+.||+|.-|+||++..  ++..+|+|++.+..  ..+...+...|-+||+.++||.++.||+.+..+...++|
T Consensus        76 l~~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~  155 (459)
T KOG0610|consen   76 LRHFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLV  155 (459)
T ss_pred             HHHHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEE
Confidence            34577788999999999999999  55889999998764  344567788999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      ||||+||+|..+++++..   ..+++..+..++.+++-||+|||   -.|||+|||||+|||+.++|++-|+||.++...
T Consensus       156 meyCpGGdL~~LrqkQp~---~~fse~~aRFYaAEvl~ALEYLH---mlGivYRDLKPENILvredGHIMLsDFDLS~~~  229 (459)
T KOG0610|consen  156 MEYCPGGDLHSLRQKQPG---KRFSESAARFYAAEVLLALEYLH---MLGIVYRDLKPENILVREDGHIMLSDFDLSLRC  229 (459)
T ss_pred             EecCCCccHHHHHhhCCC---CccchhhHHHHHHHHHHHHHHHH---hhceeeccCCcceeEEecCCcEEeeeccccccC
Confidence            999999999999988765   47999999999999999999999   899999999999999999999999999876432


Q ss_pred             CC---------------------------------CCc---------------------eeeeecccccCCccccccccc
Q 038823          226 PE---------------------------------GET---------------------HIITRSRFGAWTYSAPEYKRG  251 (338)
Q Consensus       226 ~~---------------------------------~~~---------------------~~~~~~~~gt~~y~aPE~~~~  251 (338)
                      ..                                 ...                     ...+...+||-.|+|||++.+
T Consensus       230 ~~~Pt~~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G  309 (459)
T KOG0610|consen  230 PVSPTLVKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRG  309 (459)
T ss_pred             CCCCeeeccCCCCCCCCCcccccccccccccchhccccccccccccccccchhhhcCCCCccccccccccccccceeeec
Confidence            11                                 000                     011234579999999999999


Q ss_pred             CCCCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHH
Q 038823          252 GVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLI  290 (338)
Q Consensus       252 ~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~  290 (338)
                      ...+.++|+|+|||++|||+.|..||...+..+...+++
T Consensus       310 ~GHgsAVDWWtfGIflYEmLyG~TPFKG~~~~~Tl~NIv  348 (459)
T KOG0610|consen  310 EGHGSAVDWWTFGIFLYEMLYGTTPFKGSNNKETLRNIV  348 (459)
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCcCCCCchhhHHHHh
Confidence            999999999999999999999999999877755544443

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=8.9e-41  Score=293.89  Aligned_cols=203  Identities=18%  Similarity=0.259  Sum_probs=175.8

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      ..++|++.+.||+|+||.||+|.. ++..|++|.+...  ....+.+.+|+.++++++|+||+++++++.+.+..++|||
T Consensus         4 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   81 (261)
T cd05072           4 PRESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPG--TMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITE   81 (261)
T ss_pred             chHHeEEeeecCCcCCceEEEEEecCCceEEEEEccCC--chhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEe
Confidence            456788999999999999999998 6778999987653  2234678999999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |+++++|.+++.....   ..+++..+..++.|++.||+|||   ..+++|+||||+||+++.++.++|+|||++.....
T Consensus        82 ~~~~~~L~~~l~~~~~---~~~~~~~~~~~~~~l~~~l~~LH---~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~  155 (261)
T cd05072          82 YMAKGSLLDFLKSDEG---GKVLLPKLIDFSAQIAEGMAYIE---RKNYIHRDLRAANVLVSESLMCKIADFGLARVIED  155 (261)
T ss_pred             cCCCCcHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccchhhEEecCCCcEEECCCccceecCC
Confidence            9999999999976432   25889999999999999999999   89999999999999999999999999999987654


Q ss_pred             CCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      ...... ....++..|+|||++....++.++||||||+++|+|+| |+.||...
T Consensus       156 ~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~  208 (261)
T cd05072         156 NEYTAR-EGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGM  208 (261)
T ss_pred             Cceecc-CCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCC
Confidence            332211 23346778999999988889999999999999999998 99999754

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=6.7e-40  Score=291.11  Aligned_cols=193  Identities=15%  Similarity=0.224  Sum_probs=167.7

Q ss_pred             cccCCCceEEEEEE--CCeEEEEEEeCcCCC--chHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCCCH
Q 038823           79 IKQDSTYKLYKGFW--QERLISVMKYNESYS--DSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTL  154 (338)
Q Consensus        79 lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL  154 (338)
                      ||+|+||.||++..  +++.+|+|.+.....  ......+..|++++++++||||+++++++.++...++||||+++++|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L   80 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDL   80 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCH
Confidence            69999999999998  689999999864321  22234556799999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCceeee
Q 038823          155 RDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIIT  234 (338)
Q Consensus       155 ~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~  234 (338)
                      .+++.....   ..+++..+..++.|++.||.|||   +.+++||||||+||+++.++.++|+|||++.........   
T Consensus        81 ~~~~~~~~~---~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~~~---  151 (277)
T cd05607          81 KYHIYNVGE---RGLEMERVIHYSAQITCGILHLH---SMDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKTI---  151 (277)
T ss_pred             HHHHHhccc---cCCCHHHHHHHHHHHHHHHHHHH---HCCEEEccCChHhEEEcCCCCEEEeeceeeeecCCCcee---
Confidence            988865432   25889999999999999999999   899999999999999999999999999998776543321   


Q ss_pred             ecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          235 RSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       235 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ....|+..|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus       152 ~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~  197 (277)
T cd05607         152 TQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDH  197 (277)
T ss_pred             eccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCC
Confidence            3456899999999999888999999999999999999999999754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=2.2e-40  Score=299.99  Aligned_cols=194  Identities=22%  Similarity=0.220  Sum_probs=168.5

Q ss_pred             CccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcceEEEeecCC
Q 038823           77 KFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIPILVFEYGEY  151 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~~~  151 (338)
                      +.||+|+||.||+|..  ++..||+|.+.+..  .......+.+|..++..+ +||||+++++++.+.+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~   80 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNG   80 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            4699999999999999  67899999987542  233446677888998887 699999999999999999999999999


Q ss_pred             CCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCce
Q 038823          152 TTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH  231 (338)
Q Consensus       152 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~  231 (338)
                      |+|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+||++++++.+||+|||++.........
T Consensus        81 ~~L~~~~~~~~-----~l~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~  152 (318)
T cd05570          81 GDLMFHIQRSG-----RFDEPRARFYAAEIVLGLQFLH---ERGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVT  152 (318)
T ss_pred             CCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---hCCeEccCCCHHHeEECCCCcEEecccCCCeecCcCCCc
Confidence            99999887654     5899999999999999999999   999999999999999999999999999998753222211


Q ss_pred             eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          232 IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       232 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                        .....||..|+|||++.+..++.++|||||||++|+|+||+.||...
T Consensus       153 --~~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~  199 (318)
T cd05570         153 --TSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGD  199 (318)
T ss_pred             --ccceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCC
Confidence              13446899999999999999999999999999999999999999753

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=5.3e-41  Score=310.97  Aligned_cols=203  Identities=14%  Similarity=0.092  Sum_probs=174.1

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++|++.+.||+|+||.||+|..  +++.||+|.+....  .......+.+|+.+|.+++|+||+++++.+.+.+.+++||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (376)
T cd05598           1 SMFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVM   80 (376)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEE
Confidence            3688999999999999999998  78899999986432  1223466889999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++|+|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||++....
T Consensus        81 E~~~~g~L~~~i~~~~-----~~~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~  152 (376)
T cd05598          81 DYIPGGDMMSLLIRLG-----IFEEDLARFYIAELTCAIESVH---KMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFR  152 (376)
T ss_pred             eCCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCCHHHEEECCCCCEEEEeCCCCcccc
Confidence            9999999999997654     5889999999999999999999   9999999999999999999999999999975321


Q ss_pred             CCC-----------------------------------------ceeeeecccccCCcccccccccCCCCccchHHHHHH
Q 038823          227 EGE-----------------------------------------THIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFST  265 (338)
Q Consensus       227 ~~~-----------------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv  265 (338)
                      ...                                         .........||+.|+|||++.+..++.++|||||||
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGv  232 (376)
T cd05598         153 WTHDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGV  232 (376)
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeeccc
Confidence            000                                         000012346999999999999888999999999999


Q ss_pred             HHHHHHhCCCCcCCcc
Q 038823          266 VLLELLTGQSTRDLLR  281 (338)
Q Consensus       266 ~l~el~tG~~p~~~~~  281 (338)
                      ++|||+||+.||....
T Consensus       233 ilyell~G~~Pf~~~~  248 (376)
T cd05598         233 ILYEMLVGQPPFLADT  248 (376)
T ss_pred             eeeehhhCCCCCCCCC
Confidence            9999999999998644

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=3.1e-40  Score=298.69  Aligned_cols=194  Identities=22%  Similarity=0.251  Sum_probs=166.8

Q ss_pred             CccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhc-cCCcceeeeeeeeecCCcceEEEeecCC
Q 038823           77 KFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQ-MDHKHILKLIGCCLETPIPILVFEYGEY  151 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~-l~h~niv~l~~~~~~~~~~~lv~e~~~~  151 (338)
                      +.||+|+||.||+|.+  ++..||+|.+....  .......+..|..++.. ++||||+++++++.+.+..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~   80 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence            4689999999999998  67889999987542  12334556778888876 4899999999999999999999999999


Q ss_pred             CCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCce
Q 038823          152 TTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH  231 (338)
Q Consensus       152 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~  231 (338)
                      |+|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++.........
T Consensus        81 g~L~~~l~~~~-----~~~~~~~~~~~~qi~~al~~LH---~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~  152 (316)
T cd05619          81 GDLMFHIQSCH-----KFDLPRATFYAAEIICGLQFLH---SKGIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAK  152 (316)
T ss_pred             CcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---hCCeEeCCCCHHHEEECCCCCEEEccCCcceECCCCCCc
Confidence            99999997653     5899999999999999999999   899999999999999999999999999998754322211


Q ss_pred             eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          232 IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       232 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                        .....||..|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus       153 --~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~  199 (316)
T cd05619         153 --TCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGH  199 (316)
T ss_pred             --eeeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCC
Confidence              13456899999999999888999999999999999999999999753

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=1.9e-40  Score=300.15  Aligned_cols=194  Identities=19%  Similarity=0.201  Sum_probs=167.0

Q ss_pred             CccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcceEEEeecCC
Q 038823           77 KFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIPILVFEYGEY  151 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~~~  151 (338)
                      +.||+|+||.||+|.+  ++..||+|.+....  ..........|..++... +|+||+++++++.+.+..++||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~   80 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCC
Confidence            4699999999999999  78899999997542  123345567788888754 899999999999999999999999999


Q ss_pred             CCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCce
Q 038823          152 TTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH  231 (338)
Q Consensus       152 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~  231 (338)
                      |+|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++.........
T Consensus        81 g~L~~~i~~~~-----~~~~~~~~~~~~qi~~~l~~lH---~~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~  152 (316)
T cd05620          81 GDLMFHIQDKG-----RFDLYRATFYAAEIVCGLQFLH---SKGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNR  152 (316)
T ss_pred             CcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEECCCCCEEeCccCCCeecccCCCc
Confidence            99999987653     5899999999999999999999   899999999999999999999999999998753222111


Q ss_pred             eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          232 IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       232 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                        .....||..|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus       153 --~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~  199 (316)
T cd05620         153 --ASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGD  199 (316)
T ss_pred             --eeccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCC
Confidence              14456899999999999889999999999999999999999999753

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=1.7e-40  Score=301.45  Aligned_cols=194  Identities=21%  Similarity=0.184  Sum_probs=165.8

Q ss_pred             CccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHH-HHhccCCcceeeeeeeeecCCcceEEEeecCC
Q 038823           77 KFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIV-YAAQMDHKHILKLIGCCLETPIPILVFEYGEY  151 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~-~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~  151 (338)
                      +.||+|+||.||+|..  +++.||+|.+....  .......+..|.. +++.++||||+++++++.+.+..++||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC
Confidence            4699999999999999  78899999987532  1223344555555 56789999999999999999999999999999


Q ss_pred             CCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCce
Q 038823          152 TTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH  231 (338)
Q Consensus       152 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~  231 (338)
                      |+|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||++.........
T Consensus        81 g~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH---~~givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~~~  152 (323)
T cd05575          81 GELFFHLQRER-----SFPEPRARFYAAEIASALGYLH---SLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSKT  152 (323)
T ss_pred             CCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCCHHHeEECCCCcEEEeccCCCcccccCCCc
Confidence            99999987654     5899999999999999999999   899999999999999999999999999998754322211


Q ss_pred             eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          232 IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       232 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                        .....||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus       153 --~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~  199 (323)
T cd05575         153 --TSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSR  199 (323)
T ss_pred             --cccccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCC
Confidence              13456899999999999888999999999999999999999999753

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=2.4e-40  Score=295.84  Aligned_cols=206  Identities=22%  Similarity=0.285  Sum_probs=173.7

Q ss_pred             CCCcCCccccCCCceEEEEEEC-------CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           72 NYDERKFIKQDSTYKLYKGFWQ-------ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~~-------~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      +|.+.+.||+|+||.||+|...       ...+++|.+...........+.+|+.+++.++||||+++++++...+..++
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l   80 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLL   80 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEE
Confidence            4778899999999999999872       246888888766555556788999999999999999999999999999999


Q ss_pred             EEeecCCCCHHHhhhcCCC-------------------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCc
Q 038823          145 VFEYGEYTTLRDRIFGAPQ-------------------PHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLC  205 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~-------------------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~N  205 (338)
                      |+||+++++|.+++.....                   .....+++..++.++.|++.||.|||   +.+++||||||+|
T Consensus        81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH---~~~ivH~dikp~n  157 (290)
T cd05045          81 IVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLA---EMKLVHRDLAARN  157 (290)
T ss_pred             EEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHH---HCCeehhhhhhhe
Confidence            9999999999999864311                   01125889999999999999999999   8999999999999


Q ss_pred             eeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          206 ILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       206 ill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      |++++++.+||+|||+++...............++..|+|||.+.+..++.++||||||+++|||+| |..||...
T Consensus       158 ill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~  233 (290)
T cd05045         158 VLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGI  233 (290)
T ss_pred             EEEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCC
Confidence            9999999999999999876544332222233345678999999988889999999999999999999 99999754

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=100.00  E-value=2.1e-40  Score=307.98  Aligned_cols=215  Identities=18%  Similarity=0.268  Sum_probs=180.3

Q ss_pred             HHHHHhhcCCCcCCccccCCCceEEEEEEC-------CeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-Ccceeeeeee
Q 038823           64 KELEIATNNYDERKFIKQDSTYKLYKGFWQ-------ERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGC  135 (338)
Q Consensus        64 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~-------~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~  135 (338)
                      .+++...++|.+.+.||+|+||.||+|.+.       +..||+|++.........+.+.+|+.+|.++. ||||++++++
T Consensus        30 ~~~~~~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~  109 (401)
T cd05107          30 SAWEMPRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGA  109 (401)
T ss_pred             CcceecHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEE
Confidence            356777788999999999999999999862       35799999986644444567899999999997 9999999999


Q ss_pred             eecCCcceEEEeecCCCCHHHhhhcCCC----------------------------------------------------
Q 038823          136 CLETPIPILVFEYGEYTTLRDRIFGAPQ----------------------------------------------------  163 (338)
Q Consensus       136 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~----------------------------------------------------  163 (338)
                      |...+..++||||+++|+|.+++.....                                                    
T Consensus       110 ~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (401)
T cd05107         110 CTKGGPIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADY  189 (401)
T ss_pred             EccCCCcEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCc
Confidence            9999999999999999999999965321                                                    


Q ss_pred             -----------------------------------------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCC
Q 038823          164 -----------------------------------------PHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLI  202 (338)
Q Consensus       164 -----------------------------------------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik  202 (338)
                                                               .....+++..+..++.|++.||.|||   ..+++|||||
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrdlk  266 (401)
T cd05107         190 VPMQDMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLA---SKNCVHRDLA  266 (401)
T ss_pred             cchhcchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcCcccCC
Confidence                                                     01124778889999999999999999   8999999999


Q ss_pred             CCceeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          203 SLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       203 ~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      |+|||+++++.+||+|||+++...............++..|+|||.+.+..++.++||||||+++|||++ |..||....
T Consensus       267 p~NiLl~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~  346 (401)
T cd05107         267 ARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELP  346 (401)
T ss_pred             cceEEEeCCCEEEEEecCcceecccccccccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            9999999999999999999986543322211133456788999999988889999999999999999998 899987543

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=1.2e-40  Score=304.05  Aligned_cols=200  Identities=20%  Similarity=0.233  Sum_probs=169.4

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCC-----cce
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETP-----IPI  143 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-----~~~  143 (338)
                      +|++.+.||+|+||.||+|..  ++..||+|++.... .......+.+|+.++++++||||+++++++...+     ..+
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~   80 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIY   80 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEE
Confidence            477889999999999999998  78899999987542 2334457889999999999999999999886432     479


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      +||||+. ++|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||+++
T Consensus        81 lv~e~~~-~~L~~~l~~~~-----~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~  151 (338)
T cd07859          81 VVFELME-SDLHQVIKAND-----DLTPEHHQFFLYQLLRALKYIH---TANVFHRDLKPKNILANADCKLKICDFGLAR  151 (338)
T ss_pred             EEEecCC-CCHHHHHHhcc-----cCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCcEEEccCcccc
Confidence            9999997 79999887654     5899999999999999999999   8999999999999999999999999999987


Q ss_pred             ccCCCCc-eeeeecccccCCccccccccc--CCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          224 SIPEGET-HIITRSRFGAWTYSAPEYKRG--GVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       224 ~~~~~~~-~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ....... ........||..|+|||++.+  ..++.++|||||||++|||+||++||...
T Consensus       152 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~  211 (338)
T cd07859         152 VAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGK  211 (338)
T ss_pred             ccccccCccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCC
Confidence            6533221 111134568999999999865  57899999999999999999999999754

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=9.1e-40  Score=291.00  Aligned_cols=207  Identities=19%  Similarity=0.235  Sum_probs=175.4

Q ss_pred             cCCCcCCccccCCCceEEEEEE------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW------QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      ++|++.+.||+|+||.||+|.+      .+..+++|.+...........+.+|+.++++++|+||+++++++..++..++
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l   84 (283)
T cd05090           5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCM   84 (283)
T ss_pred             hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceEE
Confidence            4577889999999999999985      4568999999865555555778999999999999999999999999999999


Q ss_pred             EEeecCCCCHHHhhhcCCC------------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC
Q 038823          145 VFEYGEYTTLRDRIFGAPQ------------PHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN  212 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~------------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~  212 (338)
                      ||||+++++|.+++.....            .....+++.++..++.|++.||.|||   +.+++|+||||+||+++.++
T Consensus        85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~i~H~dlkp~nili~~~~  161 (283)
T cd05090          85 LFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLS---SHFFVHKDLAARNILIGEQL  161 (283)
T ss_pred             EEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hcCeehhccccceEEEcCCC
Confidence            9999999999999853221            00125789999999999999999999   89999999999999999999


Q ss_pred             ceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          213 VAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       213 ~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      .+||+|||++................++..|+|||++.+..++.++||||||+++|||++ |..||...
T Consensus       162 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~  230 (283)
T cd05090         162 HVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGF  230 (283)
T ss_pred             cEEeccccccccccCCcceecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCC
Confidence            999999999987654332222234446778999999988889999999999999999999 99999753

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=1.9e-40  Score=302.11  Aligned_cols=202  Identities=15%  Similarity=0.128  Sum_probs=175.0

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++|.+.+.||+|+||.||++..  +++.||+|.+.+..  .......+.+|..++..++|+||+++++++.+.+..++||
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~   80 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVM   80 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            4788999999999999999998  67889999986531  2233455788999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++|+|.+++.....    .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++....
T Consensus        81 Ey~~gg~L~~~l~~~~~----~l~~~~~~~~~~qi~~~L~~lH---~~~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~  153 (331)
T cd05624          81 DYYVGGDLLTLLSKFED----RLPEDMARFYIAEMVLAIHSIH---QLHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMN  153 (331)
T ss_pred             eCCCCCcHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCchHHEEEcCCCCEEEEeccceeecc
Confidence            99999999999976432    6899999999999999999999   9999999999999999999999999999997765


Q ss_pred             CCCceeeeecccccCCccccccccc-----CCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRG-----GVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ...... .....||+.|+|||++.+     +.++.++|||||||++|+|++|+.||...
T Consensus       154 ~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~  211 (331)
T cd05624         154 QDGTVQ-SSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAE  211 (331)
T ss_pred             CCCcee-eccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccCC
Confidence            433221 134569999999999865     45789999999999999999999999753

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=3.7e-40  Score=292.90  Aligned_cols=203  Identities=21%  Similarity=0.280  Sum_probs=173.6

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCe----EEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcce
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QER----LISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~----~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      .++|+..+.||+|+||+||+|.+  ++.    .||+|.+...........+.+|+.++..++|+||+++++++... ..+
T Consensus         6 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~   84 (279)
T cd05109           6 ETELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLTS-TVQ   84 (279)
T ss_pred             hhheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCC-CcE
Confidence            35688889999999999999987  444    48999987665555567889999999999999999999999754 578


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      +++||+++|+|.+++.....    .+++..++.++.|++.||.|||   +.+++||||||+||++++++.+||+|||+++
T Consensus        85 l~~~~~~~g~l~~~l~~~~~----~~~~~~~~~~~~qi~~~L~~lH---~~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~  157 (279)
T cd05109          85 LVTQLMPYGCLLDYVRENKD----RIGSQDLLNWCVQIAKGMSYLE---EVRLVHRDLAARNVLVKSPNHVKITDFGLAR  157 (279)
T ss_pred             EEEEcCCCCCHHHHHhhccC----CCCHHHHHHHHHHHHHHHHHHH---HCCeeccccccceEEEcCCCcEEECCCCcee
Confidence            99999999999999976543    6899999999999999999999   8999999999999999999999999999998


Q ss_pred             ccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      ...............++..|+|||...+..++.++|||||||++|||+| |..||...
T Consensus       158 ~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~  215 (279)
T cd05109         158 LLDIDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGI  215 (279)
T ss_pred             ecccccceeecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCC
Confidence            7654433222223345678999999988889999999999999999998 99999753

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=100.00  E-value=7.2e-40  Score=292.13  Aligned_cols=199  Identities=17%  Similarity=0.231  Sum_probs=173.2

Q ss_pred             CCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           73 YDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      |+..+.||+|+||+||+|.+  +++.+|+|.+....  .......+.+|+.++++++|+||+++.+++..++..++||||
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEe
Confidence            66678899999999999999  78899999986542  122335578899999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      +++++|.+++.....   ..+++..+..++.|++.||.|||   +.+|+||||||+||++++++.+||+|||++......
T Consensus        82 ~~~~~L~~~~~~~~~---~~~~~~~~~~~~~ql~~~l~~lH---~~~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~  155 (285)
T cd05632          82 MNGGDLKFHIYNMGN---PGFEEERALFYAAEILCGLEDLH---RENTVYRDLKPENILLDDYGHIRISDLGLAVKIPEG  155 (285)
T ss_pred             ccCccHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCCHHHEEECCCCCEEEecCCcceecCCC
Confidence            999999988865432   26999999999999999999999   899999999999999999999999999998765433


Q ss_pred             CceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ...   ....|+..|+|||++.+..++.++|+||||+++|+|++|..||...
T Consensus       156 ~~~---~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~  204 (285)
T cd05632         156 ESI---RGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGR  204 (285)
T ss_pred             Ccc---cCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCC
Confidence            221   3446899999999998888999999999999999999999999754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.3e-40  Score=291.31  Aligned_cols=204  Identities=20%  Similarity=0.288  Sum_probs=175.1

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ...++|++.+.||+|++|.||+|.+ +++.|++|.+....  ...+.+.+|+.++++++|+||+++++++...+..++||
T Consensus         3 ~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   80 (261)
T cd05068           3 IDRTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGT--MDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVT   80 (261)
T ss_pred             cchhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCc--ccHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeee
Confidence            4556799999999999999999998 66789999987542  22466889999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++++|.+++.....   ..+++..+..++.|++.||.|||   +.+++|+||||+||++++++.+||+|||++....
T Consensus        81 e~~~~~~L~~~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~  154 (261)
T cd05068          81 ELMKYGSLLEYLQGGAG---RALKLPQLIDMAAQVASGMAYLE---AQNYIHRDLAARNVLVGENNICKVADFGLARVIK  154 (261)
T ss_pred             ecccCCcHHHHHhccCC---CCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCCcceEEEcCCCCEEECCcceEEEcc
Confidence            99999999999976542   25899999999999999999999   8999999999999999999999999999998765


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      ....... .....+..|+|||++.+..++.++||||||+++|||+| |+.||...
T Consensus       155 ~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~  208 (261)
T cd05068         155 EDIYEAR-EGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGM  208 (261)
T ss_pred             CCccccc-CCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCC
Confidence            3321111 12223457999999988889999999999999999999 99999754

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=2.7e-40  Score=290.29  Aligned_cols=201  Identities=17%  Similarity=0.234  Sum_probs=172.9

Q ss_pred             cCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeec
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYG  149 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  149 (338)
                      ++|.+.+.||+|+||.||+|.+ ++..+|+|.+....  .....+.+|+.++++++||||+++++++.+.+..++||||+
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   81 (256)
T cd05113           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS--MSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYM   81 (256)
T ss_pred             HHeEEeeEecCcccceEEEEEecCCCcEEEEEcCCCc--ccHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcC
Confidence            4577889999999999999998 55569999887542  22367899999999999999999999999998999999999


Q ss_pred             CCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCC
Q 038823          150 EYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGE  229 (338)
Q Consensus       150 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~  229 (338)
                      .+|+|.+++.....    .+++..++.++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||.+.......
T Consensus        82 ~~~~l~~~i~~~~~----~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~  154 (256)
T cd05113          82 SNGCLLNYLREHGK----RFQPSQLLEMCKDVCEGMAYLE---SKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDE  154 (256)
T ss_pred             CCCcHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHH---hCCeeccccCcceEEEcCCCCEEECCCccceecCCCc
Confidence            99999999976543    5899999999999999999999   8999999999999999999999999999987664432


Q ss_pred             ceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          230 THIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       230 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      .. ......++..|+|||.+.+..++.++||||||+++|+|+| |+.||....
T Consensus       155 ~~-~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~  206 (256)
T cd05113         155 YT-SSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFN  206 (256)
T ss_pred             ee-ecCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCC
Confidence            21 1123345678999999988889999999999999999999 999997543

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=1.1e-40  Score=288.92  Aligned_cols=205  Identities=18%  Similarity=0.259  Sum_probs=176.8

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC-chHHHHHHHHHHHHhccCCcc-eeeeeeeeecCC------
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS-DSACKFSINNIVYAAQMDHKH-ILKLIGCCLETP------  140 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l~h~n-iv~l~~~~~~~~------  140 (338)
                      ..|...++||+|+||+||+|+.  +|+.||+|++..... +.......+|+.+|+.++|+| |+.+++++.+.+      
T Consensus        11 ~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~   90 (323)
T KOG0594|consen   11 FDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIG   90 (323)
T ss_pred             HHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccc
Confidence            3466667799999999999999  889999999986643 222355789999999999999 999999998877      


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                      .+++||||++ -+|..++....... ..++...+..++.||+.||+|||   +.+|+||||||.|||++++|.+||+|||
T Consensus        91 ~l~lvfe~~d-~DL~~ymd~~~~~~-~g~~~~~ik~~m~Qll~gl~~~H---~~~IlHRDLKPQNlLi~~~G~lKlaDFG  165 (323)
T KOG0594|consen   91 KLYLVFEFLD-RDLKKYMDSLPKKP-QGLPPRLIKSFMRQLLRGLAFLH---SHGILHRDLKPQNLLISSSGVLKLADFG  165 (323)
T ss_pred             eEEEEEEeec-ccHHHHHHhccccc-cCCCHHHHHHHHHHHHHHHHHHH---hCCeecccCCcceEEECCCCcEeeeccc
Confidence            7899999999 79999998876321 25777899999999999999999   9999999999999999999999999999


Q ss_pred             CCcccCCCCceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          221 ESISIPEGETHIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      +|+...-+....  ...++|..|.|||++.+. .|+...||||+|||+.||+++++-|+....
T Consensus       166 lAra~~ip~~~y--t~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se  226 (323)
T KOG0594|consen  166 LARAFSIPMRTY--TPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSE  226 (323)
T ss_pred             hHHHhcCCcccc--cccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcH
Confidence            999776433321  566789999999998876 699999999999999999999999987655

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=100.00  E-value=8e-40  Score=293.08  Aligned_cols=252  Identities=19%  Similarity=0.204  Sum_probs=196.0

Q ss_pred             hcCCCcCCccccCCCceEEEEEEC------------------CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceee
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFWQ------------------ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILK  131 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~~------------------~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~  131 (338)
                      .++|.+.+.||+|+||.||+|.+.                  +..|++|.+.........+.+.+|++++++++|+||++
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~   83 (296)
T cd05051           4 RQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIAR   83 (296)
T ss_pred             hhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeE
Confidence            457889999999999999999872                  14589999887655556678999999999999999999


Q ss_pred             eeeeeecCCcceEEEeecCCCCHHHhhhcCCCC------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCc
Q 038823          132 LIGCCLETPIPILVFEYGEYTTLRDRIFGAPQP------HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLC  205 (338)
Q Consensus       132 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~N  205 (338)
                      +++++..++..++||||+++++|.+++......      ....+++..++.++.|++.||.|||   +.+++|+||||+|
T Consensus        84 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH---~~~i~H~dlkp~N  160 (296)
T cd05051          84 LLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLE---SLNFVHRDLATRN  160 (296)
T ss_pred             EEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHH---HcCccccccchhc
Confidence            999999999999999999999999999765411      1125899999999999999999999   8999999999999


Q ss_pred             eeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh--CCCCcCCccCC
Q 038823          206 ILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT--GQSTRDLLRTH  283 (338)
Q Consensus       206 ill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t--G~~p~~~~~~~  283 (338)
                      |+++.++.++|+|||++................++..|+|||++.+..++.++||||||+++|||++  |..||..... 
T Consensus       161 ili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~-  239 (296)
T cd05051         161 CLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLTD-  239 (296)
T ss_pred             eeecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCcCh-
Confidence            9999999999999999876654433322244456788999999988889999999999999999998  6778865432 


Q ss_pred             cccccHHHHHHHHHhcCccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          284 GSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       284 ~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                         ..+...+.............+     .     ......++.+++.+||+.||
T Consensus       240 ---~~~~~~~~~~~~~~~~~~~~~-----~-----~~~~~~~l~~li~~cl~~~p  281 (296)
T cd05051         240 ---QQVIENAGHFFRDDGRQIYLP-----R-----PPNCPKDIYELMLECWRRDE  281 (296)
T ss_pred             ---HHHHHHHHhccccccccccCC-----C-----ccCCCHHHHHHHHHHhccCh
Confidence               112222222211111111111     0     01122468899999999887

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=9.9e-42  Score=295.32  Aligned_cols=200  Identities=22%  Similarity=0.301  Sum_probs=167.3

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCC-----cc
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETP-----IP  142 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-----~~  142 (338)
                      +-.|...+++|.|+||.||+|..  +++.||||+......     .--+|+++|+.+.|||||+|..+|....     ..
T Consensus        23 ~i~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r-----~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~l   97 (364)
T KOG0658|consen   23 EISYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKR-----YKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYL   97 (364)
T ss_pred             EEEEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCC-----cCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHH
Confidence            34577789999999999999999  778999999876532     2247999999999999999998886422     35


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC-CceEEecCCC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE-NVAKLFDFSE  221 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~-~~~kl~Dfg~  221 (338)
                      .+|||||+ .+|.+.++.....+ ..++.-.+.-+..||++||+|||   +.+|+||||||.|+|+|.+ |.+||+|||.
T Consensus        98 nlVleymP-~tL~~~~r~~~~~~-~~mp~~~iKLYt~Qlfrgl~yLh---~~~IcHRDIKPqNlLvD~~tg~LKicDFGS  172 (364)
T KOG0658|consen   98 NLVLEYMP-ETLYRVIRHYTRAN-QRMPLLEIKLYTYQLFRGLAYLH---SHGICHRDIKPQNLLVDPDTGVLKICDFGS  172 (364)
T ss_pred             HHHHHhch-HHHHHHHHHHhhcC-CCCceeeeHHHHHHHHHHHHHHH---hcCcccCCCChheEEEcCCCCeEEeccCCc
Confidence            79999999 79999998531111 25777888889999999999999   8999999999999999976 9999999999


Q ss_pred             CcccCCCCceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          222 SISIPEGETHIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       222 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      |+....++..   .....|..|.|||.+.+. .|+.+.||||.||++.||+-|++-|.....
T Consensus       173 AK~L~~~epn---iSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~  231 (364)
T KOG0658|consen  173 AKVLVKGEPN---ISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSS  231 (364)
T ss_pred             ceeeccCCCc---eeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCH
Confidence            9988665433   345578899999998775 599999999999999999999999997554

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=1.4e-39  Score=290.61  Aligned_cols=208  Identities=23%  Similarity=0.277  Sum_probs=176.4

Q ss_pred             hcCCCcCCccccCCCceEEEEEE-------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcc
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW-------QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIP  142 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~-------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~  142 (338)
                      .++|.+.+.||+|+||.||++..       ++..+++|.+... .......+.+|+.++++++|+||+++++++...+..
T Consensus         4 ~~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   82 (288)
T cd05093           4 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA-SDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPL   82 (288)
T ss_pred             hHHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCc-CHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCcc
Confidence            45788899999999999999985       2456888888755 344457789999999999999999999999999999


Q ss_pred             eEEEeecCCCCHHHhhhcCCC--------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCce
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQ--------PHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVA  214 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~--------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~  214 (338)
                      ++||||+++++|.+++.....        .....+++..++.++.|++.||.|||   +.+++||||||+||++++++.+
T Consensus        83 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH---~~~i~H~dlkp~Nili~~~~~~  159 (288)
T cd05093          83 IMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLA---SQHFVHRDLATRNCLVGENLLV  159 (288)
T ss_pred             EEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccCcceEEEccCCcE
Confidence            999999999999999875431        11225899999999999999999999   8999999999999999999999


Q ss_pred             EEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          215 KLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       215 kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      ||+|||++................++..|+|||.+.+..++.++||||||+++|+|+| |.+||....
T Consensus       160 kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~  227 (288)
T cd05093         160 KIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS  227 (288)
T ss_pred             EeccCCccccccCCceeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence            9999999986654333222234446788999999988889999999999999999999 999997543

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=5.6e-40  Score=291.19  Aligned_cols=247  Identities=20%  Similarity=0.273  Sum_probs=195.2

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEEC-------CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCC
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFWQ-------ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETP  140 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-------~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~  140 (338)
                      ...++|.+.+.||+|+||.||+|...       +..|++|.+...........+.+|+.+++.++|+||+++++++....
T Consensus         3 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~   82 (277)
T cd05032           3 LPREKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQ   82 (277)
T ss_pred             cchHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCC
Confidence            34567899999999999999999872       26799999876654455567889999999999999999999999999


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCC-----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceE
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQP-----HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAK  215 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~-----~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~k  215 (338)
                      ..++||||+++|+|.+++......     ....+++..++.++.|++.||.|||   +.+++|+||||+||+++.++.+|
T Consensus        83 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~di~p~nill~~~~~~k  159 (277)
T cd05032          83 PTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLA---AKKFVHRDLAARNCMVAEDLTVK  159 (277)
T ss_pred             CcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccChheEEEcCCCCEE
Confidence            999999999999999998753321     1124789999999999999999999   89999999999999999999999


Q ss_pred             EecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccCCcccccHHHHHH
Q 038823          216 LFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRTHGSVRHLIEYLK  294 (338)
Q Consensus       216 l~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~~~~~~~l~~~~~  294 (338)
                      |+|||+++...............++..|+|||.+.++.++.++|||||||++|||+| |+.||.....    ..+..   
T Consensus       160 l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~----~~~~~---  232 (277)
T cd05032         160 IGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSN----EEVLK---  232 (277)
T ss_pred             ECCcccchhhccCcccccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCCH----HHHHH---
Confidence            999999876654433222234456789999999988889999999999999999998 9999975332    12222   


Q ss_pred             HHHhcCccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          295 NYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       295 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                       ....+.....     ..        .....+.+++.+||+.+|
T Consensus       233 -~~~~~~~~~~-----~~--------~~~~~~~~li~~~l~~~p  262 (277)
T cd05032         233 -FVIDGGHLDL-----PE--------NCPDKLLELMRMCWQYNP  262 (277)
T ss_pred             -HHhcCCCCCC-----CC--------CCCHHHHHHHHHHcCCCh
Confidence             1112211111     11        113458889999999887

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=8.3e-41  Score=302.81  Aligned_cols=194  Identities=22%  Similarity=0.169  Sum_probs=169.3

Q ss_pred             CccccCCCceEEEEEE-----CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecC
Q 038823           77 KFIKQDSTYKLYKGFW-----QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGE  150 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~-----~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~  150 (338)
                      +.||+|+||.||++..     ++..+|+|++.... .......+.+|+.++++++||||+++++++.+.+..++||||++
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~   81 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLR   81 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCC
Confidence            5799999999999875     57889999987542 22234567789999999999999999999999999999999999


Q ss_pred             CCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCc
Q 038823          151 YTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGET  230 (338)
Q Consensus       151 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~  230 (338)
                      +|+|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++........
T Consensus        82 ~~~L~~~l~~~~-----~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~  153 (318)
T cd05582          82 GGDLFTRLSKEV-----MFTEEDVKFYLAELALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEK  153 (318)
T ss_pred             CCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHeEECCCCcEEEeeccCCcccCCCCC
Confidence            999999986653     5899999999999999999999   89999999999999999999999999999876544322


Q ss_pred             eeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          231 HIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       231 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .  .....||..|+|||.+.+..++.++|||||||++|||+||+.||...
T Consensus       154 ~--~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~  201 (318)
T cd05582         154 K--AYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGK  201 (318)
T ss_pred             c--eecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCC
Confidence            1  13456899999999998888999999999999999999999999753

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=3.2e-40  Score=299.90  Aligned_cols=194  Identities=22%  Similarity=0.192  Sum_probs=164.5

Q ss_pred             CccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHH-HHhccCCcceeeeeeeeecCCcceEEEeecCC
Q 038823           77 KFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIV-YAAQMDHKHILKLIGCCLETPIPILVFEYGEY  151 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~-~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~  151 (338)
                      +.||+|+||.||+|.+  +++.+|+|.+....  .......+..|.. +++.++|+||+++++++.+.+..++||||+++
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYING   80 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCC
Confidence            4699999999999998  67789999987532  1222334445544 56788999999999999999999999999999


Q ss_pred             CCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCce
Q 038823          152 TTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH  231 (338)
Q Consensus       152 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~  231 (338)
                      |+|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||++.........
T Consensus        81 ~~L~~~~~~~~-----~~~~~~~~~~~~qi~~~L~~lH---~~giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~~~  152 (325)
T cd05602          81 GELFYHLQRER-----CFLEPRARFYAAEIASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNGT  152 (325)
T ss_pred             CcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEECCCCCEEEccCCCCcccccCCCC
Confidence            99999997653     5888899999999999999999   999999999999999999999999999998754322211


Q ss_pred             eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          232 IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       232 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                        .....||+.|+|||++.+..++.++|||||||++|+|++|+.||...
T Consensus       153 --~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  199 (325)
T cd05602         153 --TSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSR  199 (325)
T ss_pred             --cccccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCC
Confidence              14456899999999999889999999999999999999999999753

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=2.4e-40  Score=300.12  Aligned_cols=194  Identities=20%  Similarity=0.185  Sum_probs=165.3

Q ss_pred             CccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHH-HHhccCCcceeeeeeeeecCCcceEEEeecCC
Q 038823           77 KFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIV-YAAQMDHKHILKLIGCCLETPIPILVFEYGEY  151 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~-~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~  151 (338)
                      +.||+|+||.||+|..  ++..||+|.+....  .......+..|.. +++.++||||+++++++.+.+..++||||+++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNG   80 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            4699999999999999  78899999986532  2222344555554 57889999999999999999999999999999


Q ss_pred             CCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCce
Q 038823          152 TTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH  231 (338)
Q Consensus       152 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~  231 (338)
                      ++|...+....     .+++..+..++.||+.||.|||   ..+|+||||||+||+++.++.+||+|||++.........
T Consensus        81 ~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~L~~lH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~  152 (321)
T cd05603          81 GELFFHLQRER-----CFLEPRARFYAAEVASAIGYLH---SLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEET  152 (321)
T ss_pred             CCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeEECCCCCEEEccCCCCccCCCCCCc
Confidence            99998887643     5889999999999999999999   899999999999999999999999999998754322211


Q ss_pred             eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          232 IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       232 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                        .....||+.|+|||.+.+..++.++|||||||++|||++|+.||...
T Consensus       153 --~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  199 (321)
T cd05603         153 --TSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSR  199 (321)
T ss_pred             --cccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCC
Confidence              14456899999999999888999999999999999999999999753

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=3e-40  Score=290.97  Aligned_cols=202  Identities=20%  Similarity=0.296  Sum_probs=174.3

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      ..+|++.+.||+|+||.||+|.+  .+..|++|.+...  ......+.+|++++++++|+||+++++++...+..++|||
T Consensus         5 ~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (263)
T cd05052           5 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED--TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE   82 (263)
T ss_pred             hHHeEEeeecCCcccceEEEEEEecCCceEEEEEecCC--chHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEE
Confidence            44688889999999999999998  6888999998754  3334678999999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |+++++|.+++.....   ..+++..++.++.|++.||.|||   +.+++|+||||+||++++++.+||+|||++.....
T Consensus        83 ~~~~~~L~~~~~~~~~---~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~  156 (263)
T cd05052          83 FMTYGNLLDYLRECNR---QEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG  156 (263)
T ss_pred             eCCCCcHHHHHHhCCC---CCCCHHHHHHHHHHHHHHHHHHH---hCCEeecccCcceEEEcCCCcEEeCCCcccccccc
Confidence            9999999999876432   25899999999999999999999   89999999999999999999999999999877654


Q ss_pred             CCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      .... ......++..|+|||.+.+..++.++||||||+++|||++ |..||+..
T Consensus       157 ~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~  209 (263)
T cd05052         157 DTYT-AHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGI  209 (263)
T ss_pred             ceee-ccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCC
Confidence            3221 1122334668999999988889999999999999999998 99998753

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=100.00  E-value=2.1e-39  Score=286.53  Aligned_cols=202  Identities=17%  Similarity=0.160  Sum_probs=167.3

Q ss_pred             CccccCCCceEEEEEE----CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCC
Q 038823           77 KFIKQDSTYKLYKGFW----QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYT  152 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~----~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~g  152 (338)
                      +.||+|+||.||+|.+    .+..+++|.+...........+.+|+.++++++||||+++++++.+....++||||+++|
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g   80 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLG   80 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCC
Confidence            3589999999999987    345689998876544444567889999999999999999999999999999999999999


Q ss_pred             CHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCcee
Q 038823          153 TLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHI  232 (338)
Q Consensus       153 sL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~  232 (338)
                      +|.+++..........+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||.+..........
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~  157 (269)
T cd05087          81 DLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLH---KNNFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYV  157 (269)
T ss_pred             cHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHH---HCCEeccccCcceEEEcCCCcEEECCccccccccCcceee
Confidence            9999997543222225678888899999999999999   8999999999999999999999999999987654433322


Q ss_pred             eeecccccCCcccccccccC-------CCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          233 ITRSRFGAWTYSAPEYKRGG-------VFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       233 ~~~~~~gt~~y~aPE~~~~~-------~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      ......++..|+|||++.+.       .++.++|+||||+++|||++ |+.||....
T Consensus       158 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~  214 (269)
T cd05087         158 TPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLS  214 (269)
T ss_pred             cCCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCC
Confidence            22344577889999988542       35789999999999999996 999997543

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=2.5e-40  Score=296.04  Aligned_cols=213  Identities=21%  Similarity=0.279  Sum_probs=180.2

Q ss_pred             HHHHhhcCCCcCCccccCCCceEEEEEEC-------CeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeee
Q 038823           65 ELEIATNNYDERKFIKQDSTYKLYKGFWQ-------ERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCC  136 (338)
Q Consensus        65 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~-------~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~  136 (338)
                      ++....++|+..+.||+|+||.||+|...       ...+++|.+...........+.+|+.++.++ +|+||+++++++
T Consensus         6 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~   85 (293)
T cd05053           6 EWELPRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVC   85 (293)
T ss_pred             ccccCHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence            45566778999999999999999999872       2578999988655555567789999999999 799999999999


Q ss_pred             ecCCcceEEEeecCCCCHHHhhhcCCC-----------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCc
Q 038823          137 LETPIPILVFEYGEYTTLRDRIFGAPQ-----------PHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLC  205 (338)
Q Consensus       137 ~~~~~~~lv~e~~~~gsL~~~l~~~~~-----------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~N  205 (338)
                      ..++..+++|||+++|+|.+++.....           .....+++..++.++.|++.||.|||   +.+|+|+||||+|
T Consensus        86 ~~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivH~dlkp~N  162 (293)
T cd05053          86 TQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLA---SKKCIHRDLAARN  162 (293)
T ss_pred             cCCCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH---HCCccccccceee
Confidence            999999999999999999999864310           11236899999999999999999999   8999999999999


Q ss_pred             eeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          206 ILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       206 ill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      |+++.++.+||+|||+++...............++..|+|||.+.+..++.++|||||||++|||++ |..||...
T Consensus       163 il~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~  238 (293)
T cd05053         163 VLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGI  238 (293)
T ss_pred             EEEcCCCeEEeCccccccccccccceeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCC
Confidence            9999999999999999987655433222233345678999999988889999999999999999998 99998754

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=1.2e-39  Score=285.57  Aligned_cols=202  Identities=21%  Similarity=0.264  Sum_probs=177.3

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcC-CCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNES-YSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~-~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      +|+..+.||+|++|.||+|..  ++..+++|.+... ........+.+|+.++++++||||+++++++.+.+..++||||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEY   80 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEe
Confidence            477889999999999999998  7889999998643 2445567889999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      +++++|.+++.....   ..+++..++.++.+++.||.|||   ..+++|+||+|+||+++.++.++|+|||++......
T Consensus        81 ~~~~~L~~~l~~~~~---~~~~~~~~~~i~~~l~~al~~lH---~~~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~  154 (256)
T cd08529          81 AENGDLHKLLKMQRG---RPLPEDQVWRFFIQILLGLAHLH---SKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDN  154 (256)
T ss_pred             CCCCcHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEEeCCCCEEEcccccceeccCc
Confidence            999999999976522   26899999999999999999999   899999999999999999999999999998876544


Q ss_pred             CceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ....  ....|+..|+|||++.+..++.++|+||||+++|+|+||+.||....
T Consensus       155 ~~~~--~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  205 (256)
T cd08529         155 TNFA--NTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANN  205 (256)
T ss_pred             cchh--hccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Confidence            3221  33457889999999998889999999999999999999999997543

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=6.3e-40  Score=304.45  Aligned_cols=193  Identities=14%  Similarity=0.135  Sum_probs=168.9

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      .++|++.+.||+|+||.||+|.+  +++.||+|....       ..+.+|++++++++||||+++++++......++|+|
T Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~-------~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e  163 (391)
T PHA03212         91 KAGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQR-------GGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILP  163 (391)
T ss_pred             cCCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechhh-------hhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEe
Confidence            46799999999999999999998  788999997532       346789999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      ++. ++|.+++....     .+++..++.++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++.....
T Consensus       164 ~~~-~~L~~~l~~~~-----~l~~~~~~~i~~qi~~aL~ylH---~~~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~  234 (391)
T PHA03212        164 RYK-TDLYCYLAAKR-----NIAICDILAIERSVLRAIQYLH---ENRIIHRDIKAENIFINHPGDVCLGDFGAACFPVD  234 (391)
T ss_pred             cCC-CCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChHhEEEcCCCCEEEEeCCccccccc
Confidence            997 78988886653     5899999999999999999999   89999999999999999999999999999875432


Q ss_pred             CCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      .... ......||+.|+|||++.+..++.++|||||||++|||+||+.||..
T Consensus       235 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~~  285 (391)
T PHA03212        235 INAN-KYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLFE  285 (391)
T ss_pred             cccc-ccccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCC
Confidence            2111 11345699999999999988999999999999999999999988754

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=100.00  E-value=5.6e-40  Score=292.84  Aligned_cols=200  Identities=17%  Similarity=0.249  Sum_probs=173.9

Q ss_pred             CCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC--chHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           73 YDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS--DSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      |+..+.||+|+||.||++..  +++.+|+|.+.....  ......+.+|+.++++++|+||+++++.+.+.+..++||||
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTL   81 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEe
Confidence            67778999999999999999  788999999865421  22235577899999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      +++++|.+++.....   ..+++..+..++.|++.||.|||   +.+|+|+||||+||+++.++.++|+|||++......
T Consensus        82 ~~g~~L~~~l~~~~~---~~l~~~~~~~~~~qi~~~l~~lH---~~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~  155 (285)
T cd05630          82 MNGGDLKFHIYHMGE---AGFEEGRAVFYAAEICCGLEDLH---QERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEG  155 (285)
T ss_pred             cCCCcHHHHHHHhcc---cCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHEEECCCCCEEEeeccceeecCCC
Confidence            999999998865432   25899999999999999999999   899999999999999999999999999998765443


Q ss_pred             CceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ...   ....|+..|+|||.+.+..++.++||||||+++|+|++|+.||....
T Consensus       156 ~~~---~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~  205 (285)
T cd05630         156 QTI---KGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRK  205 (285)
T ss_pred             ccc---cCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCC
Confidence            322   33468999999999998889999999999999999999999998543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.1e-40  Score=289.02  Aligned_cols=200  Identities=18%  Similarity=0.229  Sum_probs=171.6

Q ss_pred             cCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeec
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYG  149 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  149 (338)
                      .+|++.+.||+|+||.||+|.+ ++..+++|.+.....  ....+.+|+.++++++|+||+++++++...+..++||||+
T Consensus         4 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~   81 (256)
T cd05059           4 SELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAM--SEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYM   81 (256)
T ss_pred             HHcchhhhhccCCCceEEEeEecCCccEEEEEeccCCC--CHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecC
Confidence            3578889999999999999998 566899999865422  2356888999999999999999999999999999999999


Q ss_pred             CCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCC
Q 038823          150 EYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGE  229 (338)
Q Consensus       150 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~  229 (338)
                      ++++|.+++.....    .+++..+..++.|++.||.|||   +.+++|+||||+||++++++.+||+|||.++......
T Consensus        82 ~~~~L~~~l~~~~~----~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~  154 (256)
T cd05059          82 ANGCLLNYLRERKG----KLGTEWLLDMCSDVCEAMEYLE---SNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQ  154 (256)
T ss_pred             CCCCHHHHHHhccc----CCCHHHHHHHHHHHHHHHHHHH---HCCcccccccHhhEEECCCCcEEECCcccceeccccc
Confidence            99999999976543    6899999999999999999999   8999999999999999999999999999987664432


Q ss_pred             ceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          230 THIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       230 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      .... ....++..|+|||.+.+..++.++||||||+++|+|+| |+.||...
T Consensus       155 ~~~~-~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~  205 (256)
T cd05059         155 YTSS-QGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERF  205 (256)
T ss_pred             cccc-CCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCC
Confidence            2111 22234568999999998889999999999999999999 89999754

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=2.2e-40  Score=305.04  Aligned_cols=204  Identities=12%  Similarity=0.116  Sum_probs=175.9

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++|+..+.||+|+||.||++..  ++..||+|++....  .......+.+|+.++.+++|+||+++++++.+.+..++||
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~   80 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIM   80 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            4688899999999999999998  78899999986432  2334567888999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++|+|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++....
T Consensus        81 E~~~gg~L~~~l~~~~-----~l~~~~~~~~~~qi~~~L~~lH---~~givHrDLkp~NIli~~~~~vkL~DfG~~~~~~  152 (360)
T cd05627          81 EFLPGGDMMTLLMKKD-----TLSEEATQFYIAETVLAIDAIH---QLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLK  152 (360)
T ss_pred             eCCCCccHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeEccCCCHHHEEECCCCCEEEeeccCCcccc
Confidence            9999999999997654     5899999999999999999999   9999999999999999999999999999986543


Q ss_pred             CCCce---------------------------------eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhC
Q 038823          227 EGETH---------------------------------IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTG  273 (338)
Q Consensus       227 ~~~~~---------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG  273 (338)
                      .....                                 .......||+.|+|||++.+..++.++|||||||++|||+||
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG  232 (360)
T cd05627         153 KAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIG  232 (360)
T ss_pred             cccccccccccccCCcccccccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccC
Confidence            21100                                 001234699999999999998999999999999999999999


Q ss_pred             CCCcCCccC
Q 038823          274 QSTRDLLRT  282 (338)
Q Consensus       274 ~~p~~~~~~  282 (338)
                      +.||.....
T Consensus       233 ~~Pf~~~~~  241 (360)
T cd05627         233 YPPFCSETP  241 (360)
T ss_pred             CCCCCCCCH
Confidence            999976443

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=100.00  E-value=2e-39  Score=292.46  Aligned_cols=198  Identities=15%  Similarity=0.174  Sum_probs=175.4

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      ++|++.+.||+|+||.||++.+  ++..+++|.+...........+.+|++++.+++||||+++++++.+++..++||||
T Consensus         1 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey   80 (308)
T cd06615           1 DDFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEH   80 (308)
T ss_pred             CCceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeec
Confidence            4688999999999999999998  67889999887654444556788999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFP-RPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~-~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      +++++|.+++....     .+++..+..++.|++.||.|||   + .+++|+||||+||+++.++.+||+|||++.....
T Consensus        81 ~~~~~L~~~l~~~~-----~~~~~~~~~~~~~i~~~l~~lH---~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~  152 (308)
T cd06615          81 MDGGSLDQVLKKAG-----RIPENILGKISIAVLRGLTYLR---EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID  152 (308)
T ss_pred             cCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---hhCCEEECCCChHHEEEecCCcEEEccCCCcccccc
Confidence            99999999997653     5899999999999999999999   6 5899999999999999999999999999876543


Q ss_pred             CCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ...    ....++..|+|||.+.+..++.++|+||||+++|+|+||+.||...
T Consensus       153 ~~~----~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~  201 (308)
T cd06615         153 SMA----NSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPP  201 (308)
T ss_pred             ccc----ccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCc
Confidence            221    3456889999999998888999999999999999999999999743

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.8e-40  Score=299.41  Aligned_cols=202  Identities=14%  Similarity=0.114  Sum_probs=174.1

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++|.+.+.||+|+||.||++..  +++.||+|.+.+..  .....+.+.+|+.++..++|+||+++++++.+.+..++||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVM   80 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEE
Confidence            4688999999999999999998  68899999987421  2233466888999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++|+|.+++.+...    .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||++....
T Consensus        81 e~~~g~~L~~~l~~~~~----~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~  153 (331)
T cd05597          81 DYYVGGDLLTLLSKFED----RLPEDMARFYLAEMVLAIDSVH---QLGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLL  153 (331)
T ss_pred             ecCCCCcHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHH---hCCeEECCCCHHHEEECCCCCEEEEECCceeecC
Confidence            99999999999976432    6899999999999999999999   9999999999999999999999999999987654


Q ss_pred             CCCceeeeecccccCCccccccccc-----CCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRG-----GVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ...... .....||+.|+|||++..     ..++.++|||||||++|+|++|+.||...
T Consensus       154 ~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~  211 (331)
T cd05597         154 ADGTVQ-SNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAE  211 (331)
T ss_pred             CCCCcc-ccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCCC
Confidence            432221 133468999999999863     45788999999999999999999999753

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=100.00  E-value=2.1e-39  Score=286.50  Aligned_cols=201  Identities=15%  Similarity=0.167  Sum_probs=165.2

Q ss_pred             CccccCCCceEEEEEE----CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCC
Q 038823           77 KFIKQDSTYKLYKGFW----QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYT  152 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~----~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~g  152 (338)
                      +.||+|+||.||+|..    ....+++|.+...........+.+|+.+++.++|+||+++++++.+.+..++||||+++|
T Consensus         1 ~~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g   80 (269)
T cd05042           1 DEIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLG   80 (269)
T ss_pred             CcCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCC
Confidence            3589999999999976    335688887765544455567889999999999999999999999999999999999999


Q ss_pred             CHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCcee
Q 038823          153 TLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHI  232 (338)
Q Consensus       153 sL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~  232 (338)
                      +|.+++..........+++.....++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++..........
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~  157 (269)
T cd05042          81 DLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLH---QADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYI  157 (269)
T ss_pred             cHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHH---hcCEecccccHhheEecCCCcEEEeccccccccccchhee
Confidence            9999997654322224578888999999999999999   8999999999999999999999999999987654432222


Q ss_pred             eeecccccCCccccccccc-------CCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          233 ITRSRFGAWTYSAPEYKRG-------GVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       233 ~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      ......++..|+|||++..       ..++.++|||||||++|||++ |..||...
T Consensus       158 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~  213 (269)
T cd05042         158 TKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDL  213 (269)
T ss_pred             ccCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcC
Confidence            2233446778999998743       346889999999999999999 78898754

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=5.1e-40  Score=291.79  Aligned_cols=210  Identities=19%  Similarity=0.257  Sum_probs=175.0

Q ss_pred             hhcCCCcCCccccCCCceEEEEEEC-------CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCc
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFWQ-------ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPI  141 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~~-------~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~  141 (338)
                      .+++|.+.+.||+|++|.||+|.+.       +..|++|.+...........+.+|+.++++++|+||+++++++.+.+.
T Consensus         4 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   83 (277)
T cd05036           4 PRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLP   83 (277)
T ss_pred             CHHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCC
Confidence            4567999999999999999999982       367888988755445555678999999999999999999999999999


Q ss_pred             ceEEEeecCCCCHHHhhhcCCC--CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC---ceEE
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQ--PHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN---VAKL  216 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~--~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~---~~kl  216 (338)
                      .++||||+++++|.+++.....  .....+++..+++++.||+.||.|||   +.+++|+||||+||+++.++   .+||
T Consensus        84 ~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~nil~~~~~~~~~~kl  160 (277)
T cd05036          84 RFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLE---ENHFIHRDIAARNCLLTCKGPGRVAKI  160 (277)
T ss_pred             cEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccchheEEEeccCCCcceEe
Confidence            9999999999999999876531  11125899999999999999999999   89999999999999998654   5999


Q ss_pred             ecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          217 FDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       217 ~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      +|||++.................+..|+|||++.+..++.++|||||||++|||++ |+.||+...
T Consensus       161 ~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~  226 (277)
T cd05036         161 ADFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRT  226 (277)
T ss_pred             ccCccccccCCccceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCC
Confidence            99999987643322211122334568999999998889999999999999999997 999997543

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=4.1e-40  Score=297.01  Aligned_cols=202  Identities=18%  Similarity=0.251  Sum_probs=172.9

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      ++|...+.||+|+||.||+|..  ++..||+|.+...........+.+|+.++++++|+||+++++++..++..++||||
T Consensus         6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   85 (309)
T cd07872           6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEY   85 (309)
T ss_pred             CceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeC
Confidence            4688899999999999999998  77889999987554333345678899999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      ++ ++|.+++.....    .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++......
T Consensus        86 ~~-~~l~~~~~~~~~----~~~~~~~~~~~~qi~~aL~~lH---~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~  157 (309)
T cd07872          86 LD-KDLKQYMDDCGN----IMSMHNVKIFLYQILRGLAYCH---RRKVLHRDLKPQNLLINERGELKLADFGLARAKSVP  157 (309)
T ss_pred             CC-CCHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEECccccceecCCC
Confidence            98 588888876543    5889999999999999999999   899999999999999999999999999998765433


Q ss_pred             CceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ...  .....++..|+|||.+.+ ..++.++||||||+++|+|+||++||.....
T Consensus       158 ~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~  210 (309)
T cd07872         158 TKT--YSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTV  210 (309)
T ss_pred             ccc--cccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCh
Confidence            221  133457899999998865 4589999999999999999999999976443

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.9e-40  Score=290.89  Aligned_cols=251  Identities=20%  Similarity=0.264  Sum_probs=200.2

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhc--cCCcceeeeeeeeecCC----c
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQ--MDHKHILKLIGCCLETP----I  141 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~l~~~~~~~~----~  141 (338)
                      .........+.||+|.||.||+|.|.|..||||++.....    +...+|.++.+.  |+|+||+.+++.-..++    .
T Consensus       208 TiarqI~L~e~IGkGRyGEVwrG~wrGe~VAVKiF~srdE----~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQ  283 (513)
T KOG2052|consen  208 TIARQIVLQEIIGKGRFGEVWRGRWRGEDVAVKIFSSRDE----RSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQ  283 (513)
T ss_pred             hhhheeEEEEEecCccccceeeccccCCceEEEEecccch----hhhhhHHHHHHHHHhccchhhhhhhccccCCCceEE
Confidence            3445577788999999999999999999999999976522    446677777765  58999999998866443    5


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC-----CCCCeeecCCCCCceeeCCCCceEE
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVG-----FPRPIVFGNLISLCILFNEENVAKL  216 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~-----~~~~iiH~dik~~Nill~~~~~~kl  216 (338)
                      +|||++|.+.|||+|+|.+.      .++....++++..+|.||++||..     .+..|.|||||+.|||+.+++.+-|
T Consensus       284 LwLvTdYHe~GSL~DyL~r~------tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~I  357 (513)
T KOG2052|consen  284 LWLVTDYHEHGSLYDYLNRN------TVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCI  357 (513)
T ss_pred             EEEeeecccCCcHHHHHhhc------cCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEE
Confidence            89999999999999999885      699999999999999999999965     5678999999999999999999999


Q ss_pred             ecCCCCcccCCCCce--eeeecccccCCcccccccccCC----C-C-ccchHHHHHHHHHHHHhC----------CCCcC
Q 038823          217 FDFSESISIPEGETH--IITRSRFGAWTYSAPEYKRGGV----F-N-EKLDVYTFSTVLLELLTG----------QSTRD  278 (338)
Q Consensus       217 ~Dfg~a~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~----~-~-~~~Dv~s~Gv~l~el~tG----------~~p~~  278 (338)
                      +|+|+|.........  ...+..+||.+|||||++....    + + ..+||||||.++||++..          ++||.
T Consensus       358 ADLGLAv~h~~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyy  437 (513)
T KOG2052|consen  358 ADLGLAVRHDSDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYY  437 (513)
T ss_pred             eeceeeEEecccCCcccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcc
Confidence            999999877654322  2336778999999999986542    1 1 358999999999999862          56887


Q ss_pred             CccCCcccccHHHHHHHHHhcCccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          279 LLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       279 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                      ...+.+-  +. +.++...-.++++..++.++..+       +++..+.+++..||..+|
T Consensus       438 d~Vp~DP--s~-eeMrkVVCv~~~RP~ipnrW~s~-------~~l~~m~klMkeCW~~Np  487 (513)
T KOG2052|consen  438 DVVPSDP--SF-EEMRKVVCVQKLRPNIPNRWKSD-------PALRVMAKLMKECWYANP  487 (513)
T ss_pred             cCCCCCC--CH-HHHhcceeecccCCCCCcccccC-------HHHHHHHHHHHHhhcCCc
Confidence            6655321  11 22333344455666666666544       688899999999999998

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=100.00  E-value=5.5e-40  Score=303.74  Aligned_cols=201  Identities=17%  Similarity=0.221  Sum_probs=172.2

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCC-----cce
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETP-----IPI  143 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-----~~~  143 (338)
                      +|++.+.||+|+||.||+|..  +++.||+|++.... .....+.+.+|+.+++.++|+||+++++++...+     ..+
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~   80 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIY   80 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEE
Confidence            478889999999999999998  78899999987543 2334567889999999999999999999998776     789


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      +|+||+. ++|.+.+....     .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||+++
T Consensus        81 lv~e~~~-~~l~~~~~~~~-----~l~~~~~~~~~~qi~~aL~~LH---~~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~  151 (372)
T cd07853          81 VVTELMQ-SDLHKIIVSPQ-----PLSSDHVKVFLYQILRGLKYLH---SAGILHRDIKPGNLLVNSNCVLKICDFGLAR  151 (372)
T ss_pred             EEeeccc-cCHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChHHEEECCCCCEEecccccee
Confidence            9999998 68888886543     5899999999999999999999   8999999999999999999999999999997


Q ss_pred             ccCCCCceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      .......... ....++..|+|||.+.+. .++.++|||||||++|||++|+.||.....
T Consensus       152 ~~~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~  210 (372)
T cd07853         152 VEEPDESKHM-TQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQSP  210 (372)
T ss_pred             ecccCccccC-CCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCH
Confidence            6543322211 344678999999998764 479999999999999999999999976543

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.2e-40  Score=300.56  Aligned_cols=203  Identities=19%  Similarity=0.210  Sum_probs=183.3

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCc-ceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPI-PILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~-~~lv~  146 (338)
                      ++|...+.+|+|+||.++..+.  ++..+++|++.-.. +....+...+|+.++++++|||||.+.+.+.+++. .++||
T Consensus         4 ~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Ivm   83 (426)
T KOG0589|consen    4 DNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIVM   83 (426)
T ss_pred             chhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEEE
Confidence            5688889999999999998887  77889999987543 45555678999999999999999999999999888 99999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      +||+||+|.+.|.+...   .-++++.+.+++.|++.|+.|||   +..|+|||||+.|||++.++.+||+|||+|+...
T Consensus        84 ~Y~eGg~l~~~i~~~k~---~~f~E~~i~~~~~Q~~~av~ylH---~~~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~  157 (426)
T KOG0589|consen   84 EYCEGGDLAQLIKEQKG---VLFPEERILKWFVQILLAVNYLH---ENRVLHRDLKCANIFLTKDKKVKLGDFGLAKILN  157 (426)
T ss_pred             eecCCCCHHHHHHHHhh---ccccHHHHHHHHHHHHHHHHHHH---hhhhhcccchhhhhhccccCceeecchhhhhhcC
Confidence            99999999999988763   36999999999999999999999   9999999999999999999999999999999988


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      .....  ....+||+.|+.||.+.+.+|+.|+|||||||++|||++=+++|...+
T Consensus       158 ~~~~~--a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~  210 (426)
T KOG0589|consen  158 PEDSL--ASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASN  210 (426)
T ss_pred             Cchhh--hheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCccc
Confidence            76522  266789999999999999999999999999999999999999998643

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=2.6e-40  Score=290.80  Aligned_cols=206  Identities=20%  Similarity=0.290  Sum_probs=178.5

Q ss_pred             HHhhcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           67 EIATNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        67 ~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      +++..+|+..+.||.|+||.||+|.+ ++..+++|.+... .......+.+|+.+++.++|+||+++++++.+.+..++|
T Consensus         2 ~~~~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv   80 (261)
T cd05148           2 ERPREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSD-DLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYII   80 (261)
T ss_pred             cCcHHHHHHhhhhccCCCccEEEeEecCCCcEEEEecccc-chhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEE
Confidence            35567799999999999999999999 7788999998765 333346788999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||+++++|.+++.....   ..+++..+..++.|++.||.|||   +.+++|+||+|+||++++++.+||+|||.+...
T Consensus        81 ~e~~~~~~L~~~~~~~~~---~~~~~~~~~~~~~~i~~al~~lH---~~~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~  154 (261)
T cd05148          81 TELMEKGSLLAFLRSPEG---QVLPVASLIDMACQVAEGMAYLE---EQNSIHRDLAARNILVGEDLVCKVADFGLARLI  154 (261)
T ss_pred             EeecccCCHHHHHhcCCC---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccCcceEEEcCCceEEEccccchhhc
Confidence            999999999999976432   26899999999999999999999   899999999999999999999999999999776


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      .......  ....++..|+|||.+.+..++.++||||||+++|+|++ |+.||....
T Consensus       155 ~~~~~~~--~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~  209 (261)
T cd05148         155 KEDVYLS--SDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMN  209 (261)
T ss_pred             CCccccc--cCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCC
Confidence            5432211  23346778999999988889999999999999999998 899997543

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=100.00  E-value=2e-39  Score=291.72  Aligned_cols=210  Identities=18%  Similarity=0.260  Sum_probs=179.3

Q ss_pred             HHHhhcCCCcCCccccCCCceEEEEEE-------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeeee
Q 038823           66 LEIATNNYDERKFIKQDSTYKLYKGFW-------QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCCL  137 (338)
Q Consensus        66 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~-------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~  137 (338)
                      +....++|.+.+.||+|+||.||+|..       .+..+|+|.+.........+.+.+|+.+++++ +|+||+++++++.
T Consensus        30 ~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~  109 (302)
T cd05055          30 WEFPRNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACT  109 (302)
T ss_pred             ccccHHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEe
Confidence            445556799999999999999999975       34579999987654444557789999999999 7999999999999


Q ss_pred             cCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEe
Q 038823          138 ETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLF  217 (338)
Q Consensus       138 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~  217 (338)
                      ..+..++||||+++|+|.+++.....   ..+++.++..++.|++.||.|||   +.+|+|+||||+||+++.++.++|+
T Consensus       110 ~~~~~~lv~e~~~~~~L~~~i~~~~~---~~l~~~~~~~i~~~i~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~~l~  183 (302)
T cd05055         110 IGGPILVITEYCCYGDLLNFLRRKRE---SFLTLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNVLLTHGKIVKIC  183 (302)
T ss_pred             cCCceEEEEEcCCCCcHHHHHHhCCC---CCCCHHHHHHHHHHHHHHHHHHH---HCCeehhhhccceEEEcCCCeEEEC
Confidence            99999999999999999999975432   24899999999999999999999   8999999999999999999999999


Q ss_pred             cCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          218 DFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       218 Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      |||++................++..|+|||.+.+..++.++|||||||++|||+| |..||....
T Consensus       184 dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~  248 (302)
T cd05055         184 DFGLARDIMNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMP  248 (302)
T ss_pred             CCcccccccCCCceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCC
Confidence            9999986654433222233456788999999988889999999999999999998 999997543

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=1.3e-39  Score=284.67  Aligned_cols=196  Identities=21%  Similarity=0.281  Sum_probs=169.8

Q ss_pred             CccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCCCHH
Q 038823           77 KFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLR  155 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~  155 (338)
                      ++||+|+||.||+|.. ++..+++|.+...........+.+|+.++++++|+||+++++++...+..++||||+++++|.
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   80 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFL   80 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcHH
Confidence            3689999999999988 778899999876654444567889999999999999999999999999999999999999999


Q ss_pred             HhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCceeeee
Q 038823          156 DRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITR  235 (338)
Q Consensus       156 ~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  235 (338)
                      +++.....    .+++..+..++.+++.||.|||   ..+++|+||+|+||+++.++.+||+|||++.......... ..
T Consensus        81 ~~~~~~~~----~~~~~~~~~~~~~i~~~l~~lH---~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~-~~  152 (250)
T cd05085          81 SFLRKKKD----ELKTKQLVKFALDAAAGMAYLE---SKNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSS-SG  152 (250)
T ss_pred             HHHHhcCC----CCCHHHHHHHHHHHHHHHHHHH---hCCeeecccChheEEEcCCCeEEECCCccceecccccccc-CC
Confidence            99876543    5899999999999999999999   8999999999999999999999999999987654332211 12


Q ss_pred             cccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          236 SRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       236 ~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      ...++..|+|||++....++.++||||||+++|+|++ |..||...
T Consensus       153 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~  198 (250)
T cd05085         153 LKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGM  198 (250)
T ss_pred             CCCCcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCC
Confidence            2344678999999988889999999999999999999 99999754

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=6.1e-40  Score=292.13  Aligned_cols=199  Identities=22%  Similarity=0.311  Sum_probs=168.9

Q ss_pred             CCcCCccccCCCceEEEEEE------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecC--CcceE
Q 038823           73 YDERKFIKQDSTYKLYKGFW------QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLET--PIPIL  144 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~l  144 (338)
                      |...+.||+|+||+||++..      ++..||+|.+...........+.+|+.++++++||||+++++++...  ...++
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (283)
T cd05080           6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQL   85 (283)
T ss_pred             ceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEE
Confidence            37789999999999988753      56789999987654444557788999999999999999999988653  35789


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ||||+++++|.+++...      .+++..+..++.|++.||.|||   +.+++|+||||+||++++++.+||+|||++..
T Consensus        86 v~e~~~~~~l~~~~~~~------~l~~~~~~~i~~~l~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~  156 (283)
T cd05080          86 IMEYVPLGSLRDYLPKH------KLNLAQLLLFAQQICEGMAYLH---SQHYIHRDLAARNVLLDNDRLVKIGDFGLAKA  156 (283)
T ss_pred             EecCCCCCCHHHHHHHc------CCCHHHHHHHHHHHHHHHHHHH---HCCeeccccChheEEEcCCCcEEEeecccccc
Confidence            99999999999999653      5899999999999999999999   89999999999999999999999999999887


Q ss_pred             cCCCCcee-eeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          225 IPEGETHI-ITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       225 ~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ........ ......++..|+|||.+.+..++.++||||||+++|||+||..||...
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~  213 (283)
T cd05080         157 VPEGHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSP  213 (283)
T ss_pred             cCCcchhhccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCC
Confidence            65432211 112233566799999998888999999999999999999999998653

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.1e-41  Score=307.32  Aligned_cols=247  Identities=20%  Similarity=0.273  Sum_probs=210.8

Q ss_pred             CHHHHHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecC
Q 038823           62 SAKELEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLET  139 (338)
Q Consensus        62 ~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~  139 (338)
                      ..++|+--..+.....+||.|.||.||.|.|  ....||||.++..  ....++|+.|+.+|+.++|||+|+|+|+|...
T Consensus       258 n~DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKED--tMeveEFLkEAAvMKeikHpNLVqLLGVCT~E  335 (1157)
T KOG4278|consen  258 NADKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED--TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHE  335 (1157)
T ss_pred             CcchhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhc--chhHHHHHHHHHHHHhhcCccHHHHhhhhccC
Confidence            4578888888888899999999999999999  6778999998865  34568999999999999999999999999999


Q ss_pred             CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecC
Q 038823          140 PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDF  219 (338)
Q Consensus       140 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Df  219 (338)
                      ..+|+|+|||..|+|.++|.+.++   ..++.-..+.++.||++|+.||.   .+++|||||...|.|+.++..+|++||
T Consensus       336 pPFYIiTEfM~yGNLLdYLRecnr---~ev~avvLlyMAtQIsSaMeYLE---kknFIHRDLAARNCLVgEnhiVKvADF  409 (1157)
T KOG4278|consen  336 PPFYIITEFMCYGNLLDYLRECNR---SEVPAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHIVKVADF  409 (1157)
T ss_pred             CCeEEEEecccCccHHHHHHHhch---hhcchhHHHHHHHHHHHHHHHHH---HhhhhhhhhhhhhccccccceEEeecc
Confidence            999999999999999999998876   35778889999999999999999   999999999999999999999999999


Q ss_pred             CCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccCCcccccHHHHHHHHHh
Q 038823          220 SESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRTHGSVRHLIEYLKNYLQ  298 (338)
Q Consensus       220 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~~~~~~~l~~~~~~~~~  298 (338)
                      |+++.+..+. +.......-...|.|||.+....++.|+|||+|||+|||+.| |-.||+....        ..+..++ 
T Consensus       410 GLsRlMtgDT-YTAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGidl--------SqVY~LL-  479 (1157)
T KOG4278|consen  410 GLSRLMTGDT-YTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGIDL--------SQVYGLL-  479 (1157)
T ss_pred             chhhhhcCCc-eecccCccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCccH--------HHHHHHH-
Confidence            9999987653 332244445678999999999999999999999999999999 8889986433        1122222 


Q ss_pred             cCccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          299 NNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       299 ~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                                  ..+|++.....|...+.+|+++||+-+|
T Consensus       480 ------------EkgyRM~~PeGCPpkVYeLMraCW~WsP  507 (1157)
T KOG4278|consen  480 ------------EKGYRMDGPEGCPPKVYELMRACWNWSP  507 (1157)
T ss_pred             ------------hccccccCCCCCCHHHHHHHHHHhcCCc
Confidence                        2334444555688889999999999877

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=100.00  E-value=5e-42  Score=289.54  Aligned_cols=199  Identities=19%  Similarity=0.243  Sum_probs=181.0

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeec
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYG  149 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  149 (338)
                      -|.+..+||+|+||.||+|..  .|+.+|||+....   .+.++++.|+.++.++..|++|++||.+.....+|+|||||
T Consensus        34 VFDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~---sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYC  110 (502)
T KOG0574|consen   34 VFDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVD---TDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYC  110 (502)
T ss_pred             HHHHHHHhcCCcchHHHHHHHhccCcEEEEEecCcc---chHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhc
Confidence            377889999999999999998  8999999998744   45578999999999999999999999999999999999999


Q ss_pred             CCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCC
Q 038823          150 EYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGE  229 (338)
Q Consensus       150 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~  229 (338)
                      ..||+.+.+.-...    ++++..+..++...+.||.|||   ...-||||||+.|||++.+|.+||+|||.|....+..
T Consensus       111 GAGSiSDI~R~R~K----~L~E~EIs~iL~~TLKGL~YLH---~~~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTM  183 (502)
T KOG0574|consen  111 GAGSISDIMRARRK----PLSEQEISAVLRDTLKGLQYLH---DLKKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTM  183 (502)
T ss_pred             CCCcHHHHHHHhcC----CccHHHHHHHHHHHHhHHHHHH---HHHHHHhhcccccEEEcccchhhhhhccccchhhhhH
Confidence            99999999987664    8999999999999999999999   8899999999999999999999999999998765533


Q ss_pred             ceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          230 THIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       230 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ..  .+...||+.|||||++..-.|+.++||||||++..||..|++||....+
T Consensus       184 AK--RNTVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHP  234 (502)
T KOG0574|consen  184 AK--RNTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHP  234 (502)
T ss_pred             Hh--hCccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCcccccc
Confidence            22  2566799999999999988899999999999999999999999987665

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=2.9e-39  Score=289.00  Aligned_cols=207  Identities=21%  Similarity=0.250  Sum_probs=174.8

Q ss_pred             cCCCcCCccccCCCceEEEEEE-------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcce
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW-------QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~-------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      .+|...+.||+|+||.||+|..       ++..+++|.+... .....+.+.+|+.++++++|+||+++++++...+..+
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   83 (291)
T cd05094           5 RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDP-TLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLI   83 (291)
T ss_pred             HHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCc-cHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCceE
Confidence            4577889999999999999985       2455888887654 3344467889999999999999999999999999999


Q ss_pred             EEEeecCCCCHHHhhhcCCC-----------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC
Q 038823          144 LVFEYGEYTTLRDRIFGAPQ-----------PHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN  212 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~-----------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~  212 (338)
                      +||||+++++|.+++.....           .....+++..++.++.|++.||.|||   +.+|+||||||+||+++.++
T Consensus        84 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~i~H~dlkp~Nil~~~~~  160 (291)
T cd05094          84 MVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLA---SQHFVHRDLATRNCLVGANL  160 (291)
T ss_pred             EEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccCcceEEEccCC
Confidence            99999999999999975431           01124899999999999999999999   99999999999999999999


Q ss_pred             ceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          213 VAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       213 ~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      .++|+|||++................++..|+|||++.+..++.++||||||+++|||+| |+.||....
T Consensus       161 ~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~  230 (291)
T cd05094         161 LVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLS  230 (291)
T ss_pred             cEEECCCCcccccCCCceeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence            999999999976654433222234456788999999998889999999999999999999 999987543

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=4.9e-40  Score=298.65  Aligned_cols=194  Identities=21%  Similarity=0.175  Sum_probs=165.9

Q ss_pred             CccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHH-HHhccCCcceeeeeeeeecCCcceEEEeecCC
Q 038823           77 KFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIV-YAAQMDHKHILKLIGCCLETPIPILVFEYGEY  151 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~-~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~  151 (338)
                      +.||+|+||.||+|..  +++.+|+|++....  .......+..|.. +++.++||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG   80 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC
Confidence            4689999999999998  78899999986542  2223345556655 46778999999999999999999999999999


Q ss_pred             CCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCce
Q 038823          152 TTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH  231 (338)
Q Consensus       152 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~  231 (338)
                      |+|..++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||++.........
T Consensus        81 ~~L~~~l~~~~-----~~~~~~~~~~~~qi~~al~~lH---~~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~  152 (325)
T cd05604          81 GELFFHLQRER-----SFPEPRARFYAAEIASALGYLH---SINIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDT  152 (325)
T ss_pred             CCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHeEECCCCCEEEeecCCcccCCCCCCC
Confidence            99999887653     6899999999999999999999   899999999999999999999999999998754322111


Q ss_pred             eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          232 IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       232 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                        .....||..|+|||.+.+..++.++|||||||++|||++|+.||...
T Consensus       153 --~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~  199 (325)
T cd05604         153 --TTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCR  199 (325)
T ss_pred             --cccccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCC
Confidence              13456899999999999989999999999999999999999999753

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.1e-39  Score=283.43  Aligned_cols=202  Identities=20%  Similarity=0.244  Sum_probs=174.7

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC----chHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS----DSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      ++|...+.||+|++|.||+|..  +++.+++|.+.....    ......+.+|+.++++++||||+++++++.+.+..++
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   81 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSI   81 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEE
Confidence            5789999999999999999998  788999998864421    2234578899999999999999999999999999999


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      |+||+++++|.+++....     .+++..+..++.|++.||.|||   ..+++|+||+|+||++++++.++|+|||++..
T Consensus        82 v~e~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dl~p~nilv~~~~~~~l~dfg~~~~  153 (263)
T cd06625          82 FMEYMPGGSVKDQLKAYG-----ALTETVTRKYTRQILEGVEYLH---SNMIVHRDIKGANILRDSAGNVKLGDFGASKR  153 (263)
T ss_pred             EEEECCCCcHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeeccccee
Confidence            999999999999987654     5889999999999999999999   99999999999999999999999999999876


Q ss_pred             cCCCCceee-eecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          225 IPEGETHII-TRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       225 ~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ......... .....++..|+|||.+.+..++.++||||||+++|||++|+.||...
T Consensus       154 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~  210 (263)
T cd06625         154 LQTICSSGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEF  210 (263)
T ss_pred             ccccccccccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCcccc
Confidence            543221110 02345788999999999888999999999999999999999999753

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=9.3e-40  Score=297.68  Aligned_cols=202  Identities=15%  Similarity=0.120  Sum_probs=173.5

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++|.+.+.||+|+||.||++..  ++..+|+|.+.+..  .......+.+|+.++..++|+||+++++++.+.+..++||
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVM   80 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEE
Confidence            4688899999999999999998  67789999986431  2223455788999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++|+|.+++.+...    .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++....
T Consensus        81 ey~~~g~L~~~l~~~~~----~l~~~~~~~~~~qi~~al~~lH---~~~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~  153 (332)
T cd05623          81 DYYVGGDLLTLLSKFED----RLPEDMARFYLAEMVIAIDSVH---QLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLM  153 (332)
T ss_pred             eccCCCcHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHEEECCCCCEEEeecchheecc
Confidence            99999999999976433    6899999999999999999999   9999999999999999999999999999987654


Q ss_pred             CCCceeeeecccccCCcccccccc-----cCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKR-----GGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ..... ......||+.|+|||++.     ...++.++|||||||++|||++|+.||...
T Consensus       154 ~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~  211 (332)
T cd05623         154 EDGTV-QSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAE  211 (332)
T ss_pred             cCCcc-eecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCC
Confidence            33222 113456999999999986     345889999999999999999999999753

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=2.1e-39  Score=284.81  Aligned_cols=196  Identities=17%  Similarity=0.263  Sum_probs=165.4

Q ss_pred             ccccCCCceEEEEEE----CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCCC
Q 038823           78 FIKQDSTYKLYKGFW----QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTT  153 (338)
Q Consensus        78 ~lg~G~~g~Vy~~~~----~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gs  153 (338)
                      .||+|+||.||+|.+    .+..||+|.+.........+.+.+|+.++++++|+||+++++++. .+..++||||+++++
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~-~~~~~lv~e~~~~~~   80 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCE-AEALMLVMEMASGGP   80 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEc-CCCeEEEEEeCCCCC
Confidence            389999999999987    345699999876644445577899999999999999999999886 457899999999999


Q ss_pred             HHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCceee
Q 038823          154 LRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHII  233 (338)
Q Consensus       154 L~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~  233 (338)
                      |.+++.....    .+++..+++++.|++.||.|||   ..+++|+||||+||+++.++.+||+|||++...........
T Consensus        81 L~~~l~~~~~----~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~  153 (257)
T cd05115          81 LNKFLSGKKD----EITVSNVVELMHQVSMGMKYLE---GKNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYK  153 (257)
T ss_pred             HHHHHHhCCC----CCCHHHHHHHHHHHHHHHHHHH---hcCeeecccchheEEEcCCCcEEeccCCccccccCCcccee
Confidence            9999875433    6899999999999999999999   89999999999999999999999999999876544332211


Q ss_pred             -eecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          234 -TRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       234 -~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                       .....++..|+|||.+....++.++||||||+++|||++ |..||....
T Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~  203 (257)
T cd05115         154 ARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMK  203 (257)
T ss_pred             ccCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCC
Confidence             122223578999999988889999999999999999996 999997543

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=100.00  E-value=2.6e-39  Score=290.03  Aligned_cols=209  Identities=18%  Similarity=0.195  Sum_probs=174.7

Q ss_pred             hcCCCcCCccccCCCceEEEEEE------------------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceee
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW------------------QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILK  131 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~------------------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~  131 (338)
                      .++|++.+.||+|+||.||++..                  ++..+|+|.+...........+.+|+.+++.++|+||++
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~   83 (296)
T cd05095           4 RKRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIR   83 (296)
T ss_pred             hhhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcce
Confidence            45689999999999999999854                  234689999876545555678999999999999999999


Q ss_pred             eeeeeecCCcceEEEeecCCCCHHHhhhcCCCC------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCc
Q 038823          132 LIGCCLETPIPILVFEYGEYTTLRDRIFGAPQP------HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLC  205 (338)
Q Consensus       132 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~N  205 (338)
                      +++++...+..++||||+++++|.+++......      ....+++.++..++.|++.||.|||   +.+++|+||||+|
T Consensus        84 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH---~~~i~H~dlkp~N  160 (296)
T cd05095          84 LLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLS---SLNFVHRDLATRN  160 (296)
T ss_pred             EEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHH---HCCeecccCChhe
Confidence            999999999999999999999999998764321      1124788899999999999999999   8999999999999


Q ss_pred             eeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh--CCCCcCCcc
Q 038823          206 ILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT--GQSTRDLLR  281 (338)
Q Consensus       206 ill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t--G~~p~~~~~  281 (338)
                      |+++.++.++|+|||++................++..|+|||....+.++.++|||||||++|||+|  |..||....
T Consensus       161 ili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~  238 (296)
T cd05095         161 CLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLS  238 (296)
T ss_pred             EEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccccC
Confidence            9999999999999999876544332222233345678999999888889999999999999999998  778886543

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=1.5e-39  Score=287.20  Aligned_cols=204  Identities=19%  Similarity=0.252  Sum_probs=174.2

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CC---eEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QE---RLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~---~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      .++|+..+.||+|+||.||+|..  ++   ..+++|.+.........+.+.+|+.++++++|+||+++.+++.+.+..++
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   83 (268)
T cd05063           4 PSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMI   83 (268)
T ss_pred             hHHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEE
Confidence            45788899999999999999998  33   36899998766445556778999999999999999999999999999999


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ||||+++++|.+++.....    .+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||++..
T Consensus        84 v~e~~~~~~L~~~~~~~~~----~~~~~~~~~~~~~l~~al~~lH---~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~  156 (268)
T cd05063          84 ITEYMENGALDKYLRDHDG----EFSSYQLVGMLRGIAAGMKYLS---DMNYVHRDLAARNILVNSNLECKVSDFGLSRV  156 (268)
T ss_pred             EEEcCCCCCHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHH---HCCeeccccchhhEEEcCCCcEEECCCcccee
Confidence            9999999999999976543    6899999999999999999999   89999999999999999999999999999876


Q ss_pred             cCCCCceeee-ecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          225 IPEGETHIIT-RSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       225 ~~~~~~~~~~-~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      .......... .....+..|+|||++....++.++||||||+++|||++ |+.||...
T Consensus       157 ~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~  214 (268)
T cd05063         157 LEDDPEGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDM  214 (268)
T ss_pred             cccccccceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcC
Confidence            6443221111 12223457999999988889999999999999999998 99999753

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=1.1e-39  Score=287.39  Aligned_cols=203  Identities=21%  Similarity=0.241  Sum_probs=171.7

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      ..++|.+.+.||+|+||.||+|.+ +...|++|.+.....  ..+.+.+|++++++++|+||+++++++. .+..++|||
T Consensus         4 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~--~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e   80 (262)
T cd05071           4 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM--SPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTE   80 (262)
T ss_pred             ChHHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCcc--CHHHHHHHHHHHHhCCCCCcceEEEEEC-CCCcEEEEE
Confidence            456799999999999999999998 556799999875422  2357889999999999999999999875 456899999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |+++|+|.+++.....   ..+++..+..++.|++.||.|||   +.+++|+||||+||++++++.++|+|||.+.....
T Consensus        81 ~~~~~~L~~~~~~~~~---~~~~~~~~~~~~~~l~~aL~~lH---~~~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~  154 (262)
T cd05071          81 YMSKGSLLDFLKGEMG---KYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIED  154 (262)
T ss_pred             cCCCCcHHHHHhhccc---cCCCHHHHHHHHHHHHHHHHHHH---HCCccccccCcccEEEcCCCcEEeccCCceeeccc
Confidence            9999999999976432   25789999999999999999999   89999999999999999999999999999976654


Q ss_pred             CCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      ..... .....++..|+|||+..+..++.++||||||+++|+|+| |+.||....
T Consensus       155 ~~~~~-~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~  208 (262)
T cd05071         155 NEYTA-RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV  208 (262)
T ss_pred             ccccc-ccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC
Confidence            33211 123446778999999988889999999999999999999 888987543

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.2e-40  Score=291.21  Aligned_cols=201  Identities=18%  Similarity=0.245  Sum_probs=183.3

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      ...|.+.+.||+|.||.|-+|..  .|+.||||.+.+..  +.++.-++.+|+++|+.|+||||+++|.+|...+.+.+|
T Consensus        52 kHRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIviv  131 (668)
T KOG0611|consen   52 KHRYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIV  131 (668)
T ss_pred             hhHHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEE
Confidence            34688889999999999999988  89999999998654  455667789999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||..+|.|.|++...+     .+++..+..+++||.+|+.|+|   ..+++|||||.+|||+|.++++||+|||++..+
T Consensus       132 MEYaS~GeLYDYiSer~-----~LsErEaRhfFRQIvSAVhYCH---knrVvHRDLKLENILLD~N~NiKIADFGLSNly  203 (668)
T KOG0611|consen  132 MEYASGGELYDYISERG-----SLSEREARHFFRQIVSAVHYCH---KNRVVHRDLKLENILLDQNNNIKIADFGLSNLY  203 (668)
T ss_pred             EEecCCccHHHHHHHhc-----cccHHHHHHHHHHHHHHHHHHh---hccceecccchhheeecCCCCeeeeccchhhhh
Confidence            99999999999999886     5999999999999999999999   999999999999999999999999999999887


Q ss_pred             CCCCceeeeecccccCCcccccccccCCC-CccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVF-NEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ......   ....|++-|.+||++.+.+| .+.+|-|||||+||-|+.|..||+...
T Consensus       204 ~~~kfL---qTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~D  257 (668)
T KOG0611|consen  204 ADKKFL---QTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRD  257 (668)
T ss_pred             ccccHH---HHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCch
Confidence            665432   56789999999999999887 478999999999999999999999643

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=3.1e-39  Score=284.93  Aligned_cols=203  Identities=18%  Similarity=0.204  Sum_probs=175.0

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++|++.+.||+|+||.||+|..  ++..||+|.+....  .......+.+|+.+++.++||||+++++++.+.+..++|+
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVL   81 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEE
Confidence            5788999999999999999998  78899999876422  3344567889999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++++|.+++....... ..+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||++....
T Consensus        82 e~~~~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~  157 (267)
T cd08228          82 ELADAGDLSQMIKYFKKQK-RLIPERTVWKYFVQLCSAVEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFS  157 (267)
T ss_pred             EecCCCcHHHHHHHhhhcc-CCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCCHHHEEEcCCCCEEECccccceecc
Confidence            9999999998886432111 25889999999999999999999   8999999999999999999999999999988765


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      .....  .....++..|+|||.+.+..++.++|+||||+++|||++|+.||..
T Consensus       158 ~~~~~--~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~  208 (267)
T cd08228         158 SKTTA--AHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYG  208 (267)
T ss_pred             chhHH--HhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCcc
Confidence            43221  1234588899999999888899999999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=100.00  E-value=1e-39  Score=321.30  Aligned_cols=206  Identities=21%  Similarity=0.215  Sum_probs=174.6

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC--chHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS--DSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++|.+.+.||+|+||.||+|.+  +++.||+|++.....  ....+++.+|+.++++++||||+++++++.+.+..++||
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVM   81 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTM   81 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEE
Confidence            4688899999999999999998  688999999975432  334567899999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCC------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          147 EYGEYTTLRDRIFGAPQ------PHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                      ||++||+|.+++.....      .....+++..++.++.||+.||.|||   +.+|+||||||+||+++.++.+||+|||
T Consensus        82 EY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLH---s~GIIHRDLKPeNILLd~dg~vKLiDFG  158 (932)
T PRK13184         82 PYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVH---SKGVLHRDLKPDNILLGLFGEVVILDWG  158 (932)
T ss_pred             EcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHH---HCCccccCCchheEEEcCCCCEEEEecC
Confidence            99999999998864211      00124667888999999999999999   8999999999999999999999999999


Q ss_pred             CCcccCCCCc----------------eeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          221 ESISIPEGET----------------HIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       221 ~a~~~~~~~~----------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ++........                ........||+.|+|||.+.+..++.++|||||||++|||+||+.||..
T Consensus       159 LAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~  233 (932)
T PRK13184        159 AAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRR  233 (932)
T ss_pred             cceecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCC
Confidence            9976621110                0011234699999999999999999999999999999999999999975

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=100.00  E-value=9.7e-40  Score=293.84  Aligned_cols=204  Identities=19%  Similarity=0.216  Sum_probs=170.9

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCe--EEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcceEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QER--LISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~--~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv  145 (338)
                      ++|++.+.||+|+||.||+|.+  ++.  .+++|.+...........+.+|+.++.++ +|+||+++++++.+.+.+++|
T Consensus         7 ~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~lv   86 (303)
T cd05088           7 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA   86 (303)
T ss_pred             hhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceEE
Confidence            5788889999999999999997  343  46778776554455557788999999999 899999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCC-----------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCce
Q 038823          146 FEYGEYTTLRDRIFGAPQP-----------HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVA  214 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~-----------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~  214 (338)
                      |||+++++|.+++......           ....+++.+++.++.|++.||.|||   +.+++||||||+|||++.++.+
T Consensus        87 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH---~~gi~H~dlkp~Nili~~~~~~  163 (303)
T cd05088          87 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVA  163 (303)
T ss_pred             EEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHH---hCCccccccchheEEecCCCcE
Confidence            9999999999999754310           1125889999999999999999999   9999999999999999999999


Q ss_pred             EEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          215 KLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       215 kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      ||+|||++........   .....++..|+|||++.+..++.++|||||||++|||+| |..||...
T Consensus       164 kl~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~  227 (303)
T cd05088         164 KIADFGLSRGQEVYVK---KTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGM  227 (303)
T ss_pred             EeCccccCcccchhhh---cccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccC
Confidence            9999999864321111   122234678999999988889999999999999999998 99999754

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.7e-39  Score=289.74  Aligned_cols=209  Identities=19%  Similarity=0.220  Sum_probs=174.7

Q ss_pred             hcCCCcCCccccCCCceEEEEEEC----------------CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeee
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFWQ----------------ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLI  133 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~~----------------~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~  133 (338)
                      .++|.+.+.||+|+||.||++...                ...||+|.+...........+.+|++++++++|+||++++
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~   83 (295)
T cd05097           4 RQQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLL   83 (295)
T ss_pred             hHhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEE
Confidence            457889999999999999998762                2358999987664555567789999999999999999999


Q ss_pred             eeeecCCcceEEEeecCCCCHHHhhhcCCC-------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCce
Q 038823          134 GCCLETPIPILVFEYGEYTTLRDRIFGAPQ-------PHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCI  206 (338)
Q Consensus       134 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~-------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Ni  206 (338)
                      +++...+..++||||+++++|.+++.....       .....+++..++.++.|++.||.|||   +.+++|+||||+||
T Consensus        84 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~i~H~dlkp~Ni  160 (295)
T cd05097          84 GVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLA---SLNFVHRDLATRNC  160 (295)
T ss_pred             EEEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHH---hcCeeccccChhhE
Confidence            999999999999999999999999865321       01124789999999999999999999   89999999999999


Q ss_pred             eeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh--CCCCcCCcc
Q 038823          207 LFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT--GQSTRDLLR  281 (338)
Q Consensus       207 ll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t--G~~p~~~~~  281 (338)
                      ++++++.+||+|||++................++..|+|||.+.++.++.++||||||+++|+|++  |..||....
T Consensus       161 ll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~  237 (295)
T cd05097         161 LVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLS  237 (295)
T ss_pred             EEcCCCcEEecccccccccccCcceeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccC
Confidence            999999999999999876544332222233445778999999988889999999999999999998  667877543

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=9.4e-40  Score=293.98  Aligned_cols=211  Identities=18%  Similarity=0.272  Sum_probs=177.6

Q ss_pred             HHhhcCCCcCCccccCCCceEEEEEE---------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeee
Q 038823           67 EIATNNYDERKFIKQDSTYKLYKGFW---------QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCC  136 (338)
Q Consensus        67 ~~~~~~~~~~~~lg~G~~g~Vy~~~~---------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~  136 (338)
                      ....++|.+.+.||+|+||.||+|..         ++..|++|.+...........+.+|+.+++.+ +|+||+++++++
T Consensus        11 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~   90 (304)
T cd05101          11 EFSRDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGAC   90 (304)
T ss_pred             cccHHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEE
Confidence            45566788999999999999999974         23478999987654455567889999999999 799999999999


Q ss_pred             ecCCcceEEEeecCCCCHHHhhhcCCCC-----------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCc
Q 038823          137 LETPIPILVFEYGEYTTLRDRIFGAPQP-----------HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLC  205 (338)
Q Consensus       137 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~-----------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~N  205 (338)
                      ...+..++||||+++|+|.+++......           ....+++.++..++.|++.||.|||   +.+++||||||+|
T Consensus        91 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~~givH~dlkp~N  167 (304)
T cd05101          91 TQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLA---SQKCIHRDLAARN  167 (304)
T ss_pred             ecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHH---HCCeeecccccce
Confidence            9999999999999999999999764211           1125788999999999999999999   8999999999999


Q ss_pred             eeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          206 ILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       206 ill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      |+++.++.+||+|||.++...............++..|+|||.+.+..++.++||||||+++|+|++ |..||...
T Consensus       168 ili~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~  243 (304)
T cd05101         168 VLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI  243 (304)
T ss_pred             EEEcCCCcEEECCCccceecccccccccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccC
Confidence            9999999999999999987654433222233446678999999988889999999999999999998 88888643

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=5.2e-40  Score=309.58  Aligned_cols=201  Identities=17%  Similarity=0.263  Sum_probs=164.5

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecC-------
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLET-------  139 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-------  139 (338)
                      ...+|.+.+.||+|+||.||+|..  +++.||+|++....     ....+|+.+++.++|+||+++++++...       
T Consensus        64 ~~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~-----~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~  138 (440)
T PTZ00036         64 PNKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP-----QYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEK  138 (440)
T ss_pred             cCCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc-----chHHHHHHHHHhcCCCCCcceeeeEeecccccCCC
Confidence            456799999999999999999998  77899999886431     2345799999999999999998876432       


Q ss_pred             -CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC-ceEEe
Q 038823          140 -PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN-VAKLF  217 (338)
Q Consensus       140 -~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~-~~kl~  217 (338)
                       ..+++||||++ ++|.+++...... ...+++..+..++.||+.||.|||   +.+|+||||||+|||++.++ .+||+
T Consensus       139 ~~~l~lvmE~~~-~~l~~~~~~~~~~-~~~l~~~~~~~~~~qi~~gL~yLH---~~~IiHrDLKp~NILl~~~~~~vkL~  213 (440)
T PTZ00036        139 NIFLNVVMEFIP-QTVHKYMKHYARN-NHALPLFLVKLYSYQLCRALAYIH---SKFICHRDLKPQNLLIDPNTHTLKLC  213 (440)
T ss_pred             ceEEEEEEecCC-ccHHHHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCcCHHHEEEcCCCCceeee
Confidence             23678999999 5787776532111 126899999999999999999999   99999999999999999665 69999


Q ss_pred             cCCCCcccCCCCceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          218 DFSESISIPEGETHIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       218 Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      |||+|+........   ....||+.|+|||++.+. .++.++|||||||++|||+||.+||.....
T Consensus       214 DFGla~~~~~~~~~---~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~  276 (440)
T PTZ00036        214 DFGSAKNLLAGQRS---VSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSS  276 (440)
T ss_pred             ccccchhccCCCCc---ccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCh
Confidence            99999876543221   345689999999988654 589999999999999999999999976443

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=100.00  E-value=1.9e-39  Score=287.03  Aligned_cols=203  Identities=16%  Similarity=0.218  Sum_probs=171.6

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeeeecC-----
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCCLET-----  139 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~-----  139 (338)
                      .+++.|+..+.||+|+||.||+|..  +++.+|+|.+....  .....+.+|+.++.++ +|+||+++++++...     
T Consensus         3 ~~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~--~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~   80 (272)
T cd06637           3 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG--DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGM   80 (272)
T ss_pred             ChhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCC--ccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCC
Confidence            4667788899999999999999998  78889999986542  2235678999999998 699999999998753     


Q ss_pred             -CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEec
Q 038823          140 -PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFD  218 (338)
Q Consensus       140 -~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~D  218 (338)
                       ...++||||+++++|.+++.....   ..+++..+..++.|++.||.|||   +.+|+|+||+|+||++++++.++|+|
T Consensus        81 ~~~~~iv~e~~~~~~L~~~l~~~~~---~~l~~~~~~~~~~qi~~~l~~LH---~~~ivh~dl~~~nili~~~~~~~l~D  154 (272)
T cd06637          81 DDQLWLVMEFCGAGSVTDLIKNTKG---NTLKEEWIAYICREILRGLSHLH---QHKVIHRDIKGQNVLLTENAEVKLVD  154 (272)
T ss_pred             CcEEEEEEEcCCCCcHHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHEEECCCCCEEEcc
Confidence             357999999999999999876432   26899999999999999999999   89999999999999999999999999


Q ss_pred             CCCCcccCCCCceeeeecccccCCcccccccc-----cCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          219 FSESISIPEGETHIITRSRFGAWTYSAPEYKR-----GGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       219 fg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ||++.........  .....|+..|+|||++.     +..++.++|||||||++|||++|+.||...
T Consensus       155 fg~~~~~~~~~~~--~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~  219 (272)
T cd06637         155 FGVSAQLDRTVGR--RNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDM  219 (272)
T ss_pred             CCCceeccccccc--CCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCcccc
Confidence            9998765432211  13456889999999986     335888999999999999999999999643

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=100.00  E-value=1.6e-39  Score=288.90  Aligned_cols=209  Identities=18%  Similarity=0.291  Sum_probs=178.4

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE-C-----CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeec-CCc
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW-Q-----ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLE-TPI  141 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~-~-----~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~-~~~  141 (338)
                      ..++|.+.+.||+|+||.||+|.+ .     +..|++|++...........+.+|+.++++++|+||+++++++.. +..
T Consensus         4 ~~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~   83 (280)
T cd05043           4 SRDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEP   83 (280)
T ss_pred             chhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence            456788899999999999999998 3     578999998766555666788999999999999999999998876 567


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCC---CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEec
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQP---HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFD  218 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~---~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~D  218 (338)
                      .++++||+++++|.+++......   ....+++.+++.++.|++.||.|||   +.+++|+||||+||++++++.+||+|
T Consensus        84 ~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH---~~~i~H~di~p~nil~~~~~~~kl~d  160 (280)
T cd05043          84 PFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLH---KRGVIHKDIAARNCVIDEELQVKITD  160 (280)
T ss_pred             CEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccCHhhEEEcCCCcEEECC
Confidence            89999999999999998664321   1125899999999999999999999   89999999999999999999999999


Q ss_pred             CCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          219 FSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       219 fg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      ||+++...............++..|+|||++.+..++.++||||||+++||+++ |+.||...
T Consensus       161 ~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~  223 (280)
T cd05043         161 NALSRDLFPMDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEI  223 (280)
T ss_pred             CCCcccccCCceEEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcC
Confidence            999987654443322233456778999999988889999999999999999999 99999754

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=100.00  E-value=4.9e-39  Score=287.12  Aligned_cols=212  Identities=22%  Similarity=0.260  Sum_probs=176.7

Q ss_pred             HHHhhcCCCcCCccccCCCceEEEEEE-------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeec
Q 038823           66 LEIATNNYDERKFIKQDSTYKLYKGFW-------QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLE  138 (338)
Q Consensus        66 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~-------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~  138 (338)
                      |+..+++|++.+.||+|+||.||+|..       .+..||+|.+...........+.+|+.+++.++|+||+++++++.+
T Consensus         1 ~~~~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~   80 (288)
T cd05061           1 WEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSK   80 (288)
T ss_pred             CcccHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcC
Confidence            345678899999999999999999975       2347999988765444445668899999999999999999999999


Q ss_pred             CCcceEEEeecCCCCHHHhhhcCCC-----CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCc
Q 038823          139 TPIPILVFEYGEYTTLRDRIFGAPQ-----PHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENV  213 (338)
Q Consensus       139 ~~~~~lv~e~~~~gsL~~~l~~~~~-----~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~  213 (338)
                      .+..++||||+++|+|.+++.....     .....+++..+..++.|++.||.|||   +.+|+||||||+||++++++.
T Consensus        81 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dikp~nili~~~~~  157 (288)
T cd05061          81 GQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLN---AKKFVHRDLAARNCMVAHDFT  157 (288)
T ss_pred             CCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCCcCCCCChheEEEcCCCc
Confidence            9999999999999999999975321     11234678889999999999999999   999999999999999999999


Q ss_pred             eEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          214 AKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       214 ~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      ++|+|||+++...............++..|+|||.+.++.++.++|+|||||++|||++ |..||...
T Consensus       158 ~~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~  225 (288)
T cd05061         158 VKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGL  225 (288)
T ss_pred             EEECcCCccccccccccccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCC
Confidence            99999999886544332221123345678999999998889999999999999999999 78898653

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.9e-41  Score=305.27  Aligned_cols=234  Identities=21%  Similarity=0.277  Sum_probs=192.8

Q ss_pred             CCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           73 YDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      |+..+-||.|+||.||-|.+  +...||||+++-..  +....+.++.|+..|.+++|||++.+.||+......||||||
T Consensus        28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVMEY  107 (948)
T KOG0577|consen   28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVMEY  107 (948)
T ss_pred             HHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHHH
Confidence            66678899999999999999  88899999997442  333357799999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      |- ||-.|++.-...    ++.+..+..|+.+.+.||+|||   +.+.||||||+.|||+++.|.|||+|||.|....+.
T Consensus       108 Cl-GSAsDlleVhkK----plqEvEIAAi~~gaL~gLaYLH---S~~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~PA  179 (948)
T KOG0577|consen  108 CL-GSASDLLEVHKK----PLQEVEIAAITHGALQGLAYLH---SHNRIHRDIKAGNILLSEPGLVKLADFGSASIMAPA  179 (948)
T ss_pred             Hh-ccHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHH---HhhHHhhhccccceEecCCCeeeeccccchhhcCch
Confidence            99 788888877654    8999999999999999999999   999999999999999999999999999998877654


Q ss_pred             CceeeeecccccCCcccccccc---cCCCCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHHHHHHHhc----Cc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKR---GGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQN----NR  301 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~~~~~~~~----~~  301 (338)
                            +..+||+.|||||++.   .+.|+-|+|||||||+..||.-.++|+..++......++..--.+.+..    ..
T Consensus       180 ------nsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMNAMSALYHIAQNesPtLqs~eWS~~  253 (948)
T KOG0577|consen  180 ------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPTLQSNEWSDY  253 (948)
T ss_pred             ------hcccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCccCchHHHHHHHHHhcCCCCCCCchhHHH
Confidence                  6778999999999874   5779999999999999999999999998887643333322111111111    12


Q ss_pred             cccccccccccCcCCcccH
Q 038823          302 FTEIADPIIVQDLSCTETE  320 (338)
Q Consensus       302 ~~~~~d~~l~~~~~~~~~~  320 (338)
                      +...+|.||..-|.+|++.
T Consensus       254 F~~Fvd~CLqKipqeRpts  272 (948)
T KOG0577|consen  254 FRNFVDSCLQKIPQERPTS  272 (948)
T ss_pred             HHHHHHHHHhhCcccCCcH
Confidence            4455666666666666554

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=1e-39  Score=290.61  Aligned_cols=243  Identities=16%  Similarity=0.219  Sum_probs=190.3

Q ss_pred             CCCcCCccccCCCceEEEEEE-C------CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           72 NYDERKFIKQDSTYKLYKGFW-Q------ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~-~------~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      +|.+.+.||+|+||.||+|.+ .      +..||+|++.........+.+.+|+.++.+++||||+++++++.+.+..++
T Consensus         6 ~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~   85 (283)
T cd05091           6 TVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLSM   85 (283)
T ss_pred             HHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceEE
Confidence            466778899999999999987 2      467999999866444445678899999999999999999999999999999


Q ss_pred             EEeecCCCCHHHhhhcCCC-----------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCc
Q 038823          145 VFEYGEYTTLRDRIFGAPQ-----------PHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENV  213 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~-----------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~  213 (338)
                      ++||+++++|.+++.....           .....+++..+..++.|++.||.|||   +.+++||||||+||++++++.
T Consensus        86 ~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH---~~gi~H~dlkp~Nil~~~~~~  162 (283)
T cd05091          86 IFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLS---SHHVVHKDLATRNVLVFDKLN  162 (283)
T ss_pred             EEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH---HcCccccccchhheEecCCCc
Confidence            9999999999999853210           01125888999999999999999999   899999999999999999999


Q ss_pred             eEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccCCcccccHHHH
Q 038823          214 AKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRTHGSVRHLIEY  292 (338)
Q Consensus       214 ~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~~~~~~~l~~~  292 (338)
                      +||+|||+++...............+++.|+|||.+.++.++.++||||||+++|||+| |..||.....    ..+.  
T Consensus       163 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~----~~~~--  236 (283)
T cd05091         163 VKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN----QDVI--  236 (283)
T ss_pred             eEecccccccccccchheeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCCH----HHHH--
Confidence            99999999887654433222234456789999999988889999999999999999998 8888865322    1121  


Q ss_pred             HHHHHhcCccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          293 LKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       293 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                        ..+.+......     ..        .+...+..++..||+.+|
T Consensus       237 --~~i~~~~~~~~-----~~--------~~~~~~~~li~~cl~~~p  267 (283)
T cd05091         237 --EMIRNRQVLPC-----PD--------DCPAWVYTLMLECWNEFP  267 (283)
T ss_pred             --HHHHcCCcCCC-----CC--------CCCHHHHHHHHHHhCCCc
Confidence              11222211111     11        233457889999999887

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=5.3e-39  Score=285.94  Aligned_cols=198  Identities=21%  Similarity=0.217  Sum_probs=170.8

Q ss_pred             CCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecC
Q 038823           73 YDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGE  150 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~  150 (338)
                      |++.+.||+|+||.||+|.+  ++..+++|.+... .....+.+.+|+.+++.++|+||+++++++...+..++|+||++
T Consensus         7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~   85 (282)
T cd06643           7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTK-SEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCA   85 (282)
T ss_pred             HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCC-CHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecC
Confidence            56678899999999999999  6778888888654 34456778999999999999999999999999999999999999


Q ss_pred             CCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCc
Q 038823          151 YTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGET  230 (338)
Q Consensus       151 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~  230 (338)
                      +++|.+++.+...    ++++..+..++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||++........
T Consensus        86 ~~~l~~~~~~~~~----~l~~~~~~~~~~qi~~~L~~LH---~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~  158 (282)
T cd06643          86 GGAVDAVMLELER----PLTEPQIRVVCKQTLEALNYLH---ENKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQ  158 (282)
T ss_pred             CCcHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCcccEEEccCCCEEEcccccccccccccc
Confidence            9999988765432    6899999999999999999999   89999999999999999999999999999876543221


Q ss_pred             eeeeecccccCCcccccccc-----cCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          231 HIITRSRFGAWTYSAPEYKR-----GGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       231 ~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .  .....++..|+|||++.     +..++.++|||||||++|||++|++||...
T Consensus       159 ~--~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~  211 (282)
T cd06643         159 R--RDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHEL  211 (282)
T ss_pred             c--cccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCcccc
Confidence            1  13456889999999874     345788999999999999999999999754

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.4e-39  Score=285.33  Aligned_cols=206  Identities=21%  Similarity=0.271  Sum_probs=171.1

Q ss_pred             CCcCCccccCCCceEEEEEE--C---CeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCc-----
Q 038823           73 YDERKFIKQDSTYKLYKGFW--Q---ERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPI-----  141 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~--~---~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~-----  141 (338)
                      |.+.+.||+|+||.||+|..  +   +..||+|.+.... .......+.+|+..++.++|+||+++++++.....     
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   80 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIP   80 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCc
Confidence            56778999999999999997  2   3679999987543 33445678999999999999999999998876554     


Q ss_pred             -ceEEEeecCCCCHHHhhhcCCCC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecC
Q 038823          142 -PILVFEYGEYTTLRDRIFGAPQP-HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDF  219 (338)
Q Consensus       142 -~~lv~e~~~~gsL~~~l~~~~~~-~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Df  219 (338)
                       .++|+||+++|+|..++...... ....+++..+..++.|++.||.|||   +.+++|+||||+||++++++.+||+||
T Consensus        81 ~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~df  157 (273)
T cd05035          81 KPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLS---NRNFIHRDLAARNCMLREDMTVCVADF  157 (273)
T ss_pred             ccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHH---hCCeeccccchheEEECCCCeEEECCc
Confidence             79999999999999988543211 1136899999999999999999999   899999999999999999999999999


Q ss_pred             CCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          220 SESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       220 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      |+++...............++..|+|||++....++.++||||||+++|||++ |..||....
T Consensus       158 g~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~  220 (273)
T cd05035         158 GLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVE  220 (273)
T ss_pred             cceeeccccccccccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCC
Confidence            99987654433222223345678999999988889999999999999999999 899997543

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=100.00  E-value=1.9e-39  Score=291.01  Aligned_cols=205  Identities=18%  Similarity=0.222  Sum_probs=170.5

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CC--eEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcceEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QE--RLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~--~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv  145 (338)
                      ++|++.+.||+|+||.||+|..  ++  ..+++|.++........+.+.+|+.++.++ +||||+++++++.+.+..++|
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv   81 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIA   81 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEE
Confidence            5788899999999999999988  33  246888877544445567789999999999 699999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCC-----------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCce
Q 038823          146 FEYGEYTTLRDRIFGAPQP-----------HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVA  214 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~-----------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~  214 (338)
                      +||+++++|.+++......           ....+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+
T Consensus        82 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH---~~~ivH~dlkp~Nill~~~~~~  158 (297)
T cd05089          82 IEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLS---EKQFIHRDLAARNVLVGENLAS  158 (297)
T ss_pred             EEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCcCCcceEEECCCCeE
Confidence            9999999999999654210           1125889999999999999999999   8999999999999999999999


Q ss_pred             EEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          215 KLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       215 kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      ||+|||++........   ......+..|+|||++....++.++|||||||++|||+| |..||....
T Consensus       159 kl~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~  223 (297)
T cd05089         159 KIADFGLSRGEEVYVK---KTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMT  223 (297)
T ss_pred             EECCcCCCccccceec---cCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC
Confidence            9999999864322111   112223567999999988889999999999999999998 999997543

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=1.2e-39  Score=290.45  Aligned_cols=201  Identities=18%  Similarity=0.208  Sum_probs=176.3

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      ++|++.+.||+|+||+||++..  ++..+++|++.........+.+.+|+++++.++|+||+++++++...+.+++||||
T Consensus         5 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (284)
T cd06620           5 EDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCMEF   84 (284)
T ss_pred             HHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEec
Confidence            5677889999999999999998  58889999887654455567889999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      +++++|.+++...+     .+++..+..++.+++.||.|||+  ..+++|+||+|+||++++++.++|+|||++......
T Consensus        85 ~~~~~L~~~~~~~~-----~~~~~~~~~~~~~i~~~l~~LH~--~~~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~  157 (284)
T cd06620          85 MDCGSLDRIYKKGG-----PIPVEILGKIAVAVVEGLTYLYN--VHRIMHRDIKPSNILVNSRGQIKLCDFGVSGELINS  157 (284)
T ss_pred             CCCCCHHHHHHhcc-----CCCHHHHHHHHHHHHHHHHHHHH--hcCeeccCCCHHHEEECCCCcEEEccCCcccchhhh
Confidence            99999999987653     58999999999999999999993  258999999999999999999999999988654332


Q ss_pred             CceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ..    ....|+..|+|||++.+..++.++|+|||||++|+|+||+.||.....
T Consensus       158 ~~----~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~  207 (284)
T cd06620         158 IA----DTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNI  207 (284)
T ss_pred             cc----CccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccch
Confidence            21    345689999999999888899999999999999999999999986543

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=100.00  E-value=1.7e-39  Score=293.77  Aligned_cols=212  Identities=21%  Similarity=0.286  Sum_probs=176.8

Q ss_pred             HHHhhcCCCcCCccccCCCceEEEEEE---------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeee
Q 038823           66 LEIATNNYDERKFIKQDSTYKLYKGFW---------QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGC  135 (338)
Q Consensus        66 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~---------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~  135 (338)
                      +....++|.+.+.||+|+||.||+|..         ....+|+|.+...........+.+|+.+++++ +|+||++++++
T Consensus         7 ~~~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~   86 (314)
T cd05099           7 WEFPRDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGV   86 (314)
T ss_pred             ccccHHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEE
Confidence            344556788999999999999999975         24568999988655555567789999999999 59999999999


Q ss_pred             eecCCcceEEEeecCCCCHHHhhhcCCCC-----------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCC
Q 038823          136 CLETPIPILVFEYGEYTTLRDRIFGAPQP-----------HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISL  204 (338)
Q Consensus       136 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~-----------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~  204 (338)
                      +.+.+..++||||+++|+|.+++......           ....+++.++..++.|++.||.|||   +.+++|+||||+
T Consensus        87 ~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH---~~gi~H~dlkp~  163 (314)
T cd05099          87 CTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLE---SRRCIHRDLAAR  163 (314)
T ss_pred             EccCCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHH---HCCeeeccccce
Confidence            99999999999999999999999764210           1135899999999999999999999   899999999999


Q ss_pred             ceeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          205 CILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       205 Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      ||+++.++.+||+|||+++...............++..|+|||.+.+..++.++||||||+++|+|++ |..||...
T Consensus       164 Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~  240 (314)
T cd05099         164 NVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGI  240 (314)
T ss_pred             eEEEcCCCcEEEccccccccccccccccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCC
Confidence            99999999999999999987654322211122234567999999988889999999999999999999 89998754

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=100.00  E-value=2.1e-39  Score=285.04  Aligned_cols=205  Identities=19%  Similarity=0.255  Sum_probs=175.2

Q ss_pred             HHhhcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           67 EIATNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        67 ~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      ++..++|.+.+.||+|+||.||+|.. +++.+|+|.+.....  ....+.+|+.++++++|+||+++++++. .+..++|
T Consensus         2 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~--~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v   78 (260)
T cd05067           2 EVPRETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSM--SPEAFLAEANLMKQLQHPRLVRLYAVVT-QEPIYII   78 (260)
T ss_pred             ccchHHceeeeeeccCccceEEeeecCCCceEEEEEecCCCC--cHHHHHHHHHHHHhcCCcCeeeEEEEEc-cCCcEEE
Confidence            34567899999999999999999998 778899999875432  2367889999999999999999999864 5578999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||+++++|.+++.....   ..+++.++..++.|++.||.|||   +.+++|+||||+||++++++.++|+|||++...
T Consensus        79 ~e~~~~~~L~~~~~~~~~---~~~~~~~~~~i~~~i~~al~~LH---~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~  152 (260)
T cd05067          79 TEYMENGSLVDFLKTPEG---IKLTINKLIDMAAQIAEGMAFIE---RKNYIHRDLRAANILVSETLCCKIADFGLARLI  152 (260)
T ss_pred             EEcCCCCCHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHh---cCCeecccccHHhEEEcCCCCEEEccCcceeec
Confidence            999999999999876432   26899999999999999999999   899999999999999999999999999998776


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      ........ ....++..|+|||++....++.++||||||+++|||++ |+.||....
T Consensus       153 ~~~~~~~~-~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~  208 (260)
T cd05067         153 EDNEYTAR-EGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMT  208 (260)
T ss_pred             CCCCcccc-cCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCC
Confidence            53322211 33346778999999988889999999999999999999 999997543

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=2.7e-39  Score=287.68  Aligned_cols=207  Identities=22%  Similarity=0.251  Sum_probs=174.5

Q ss_pred             cCCCcCCccccCCCceEEEEEE-------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcce
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW-------QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~-------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      .+|+....||+|+||.||++..       ++..+++|.+... .......+.+|+++++.++|+||+++++++.+.+..+
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   83 (280)
T cd05092           5 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA-SESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLL   83 (280)
T ss_pred             HhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcC-CHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCceE
Confidence            4677889999999999999974       3567888887754 4445578999999999999999999999999999999


Q ss_pred             EEEeecCCCCHHHhhhcCCCC----------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQP----------HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENV  213 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~----------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~  213 (338)
                      +||||+++++|.+++......          ....+++..++.++.|++.||.|||   +.+++|+||||+||++++++.
T Consensus        84 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH---~~~i~H~dlkp~nil~~~~~~  160 (280)
T cd05092          84 MVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLA---SLHFVHRDLATRNCLVGQGLV  160 (280)
T ss_pred             EEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHH---HCCeecccccHhhEEEcCCCC
Confidence            999999999999998764310          1125889999999999999999999   999999999999999999999


Q ss_pred             eEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          214 AKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       214 ~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      +||+|||++................+++.|+|||.+.+..++.++|||||||++|||++ |++||....
T Consensus       161 ~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~  229 (280)
T cd05092         161 VKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLS  229 (280)
T ss_pred             EEECCCCceeEcCCCceeecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCC
Confidence            99999999876544332222233345788999999998889999999999999999998 999997543

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=100.00  E-value=3e-39  Score=285.30  Aligned_cols=204  Identities=21%  Similarity=0.252  Sum_probs=174.9

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--C---CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--Q---ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~---~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      ..+|.+.+.||+|+||.||+|.+  +   +..+++|.+.........+.+.+|+.++++++||||+++++++.+++..++
T Consensus         3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   82 (267)
T cd05066           3 ASCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMI   82 (267)
T ss_pred             HHHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEE
Confidence            35688889999999999999987  2   236899998765445556788999999999999999999999999999999


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ||||+++++|.+++.....    .+++.++..++.|++.||.|||   +.+++|+||||+||+++.++.++|+|||.+..
T Consensus        83 v~e~~~~~~L~~~~~~~~~----~~~~~~~~~i~~~i~~~l~~lH---~~~i~h~dlkp~nili~~~~~~~l~dfg~~~~  155 (267)
T cd05066          83 VTEYMENGSLDAFLRKHDG----QFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLAARNILVNSNLVCKVSDFGLSRV  155 (267)
T ss_pred             EEEcCCCCCHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHH---HCCEeehhhchhcEEECCCCeEEeCCCCcccc
Confidence            9999999999999976543    6899999999999999999999   99999999999999999999999999999987


Q ss_pred             cCCCCceeee-ecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          225 IPEGETHIIT-RSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       225 ~~~~~~~~~~-~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      .......... ....++..|+|||++.+..++.++|+||||+++||+++ |+.||...
T Consensus       156 ~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~  213 (267)
T cd05066         156 LEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEM  213 (267)
T ss_pred             cccccceeeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccC
Confidence            6543322111 22223568999999998889999999999999999886 99999754

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=1.1e-39  Score=293.90  Aligned_cols=210  Identities=20%  Similarity=0.272  Sum_probs=175.4

Q ss_pred             HHhhcCCCcCCccccCCCceEEEEEE---------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeee
Q 038823           67 EIATNNYDERKFIKQDSTYKLYKGFW---------QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCC  136 (338)
Q Consensus        67 ~~~~~~~~~~~~lg~G~~g~Vy~~~~---------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~  136 (338)
                      ....++|.+.+.||+|+||.||++..         +...+|+|.+...........+.+|+.+++++ +|+||+++++++
T Consensus        14 ~~~~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~   93 (307)
T cd05098          14 EVPRDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGAC   93 (307)
T ss_pred             eeehHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEE
Confidence            34456799999999999999999986         12469999988654445557788999999999 799999999999


Q ss_pred             ecCCcceEEEeecCCCCHHHhhhcCCCC-----------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCc
Q 038823          137 LETPIPILVFEYGEYTTLRDRIFGAPQP-----------HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLC  205 (338)
Q Consensus       137 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~-----------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~N  205 (338)
                      ...+..++||||+++|+|.+++......           ....+++.+++.++.|++.||.|||   +.+++|+||||+|
T Consensus        94 ~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH---~~gi~H~dlkp~N  170 (307)
T cd05098          94 TQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLA---SKKCIHRDLAARN  170 (307)
T ss_pred             ecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHH---HCCcccccccHHh
Confidence            9999999999999999999999764321           1125899999999999999999999   8999999999999


Q ss_pred             eeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCC
Q 038823          206 ILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDL  279 (338)
Q Consensus       206 ill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~  279 (338)
                      |+++.++.+||+|||.+................++..|+|||.+.+..++.++|||||||++|||++ |..||..
T Consensus       171 ill~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~  245 (307)
T cd05098         171 VLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPG  245 (307)
T ss_pred             eEEcCCCcEEECCCcccccccccchhhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCc
Confidence            9999999999999999876643322211122234578999999988889999999999999999998 8889864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=1.2e-38  Score=281.82  Aligned_cols=205  Identities=20%  Similarity=0.280  Sum_probs=168.1

Q ss_pred             CCcCCccccCCCceEEEEEE--CCe--EEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecC------Cc
Q 038823           73 YDERKFIKQDSTYKLYKGFW--QER--LISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLET------PI  141 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~--~~~--~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~------~~  141 (338)
                      |.+.+.||+|+||.||+|.+  .+.  .+|+|.+.... .....+.+.+|+.+++.++|+||+++++++...      ..
T Consensus         1 ~~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   80 (272)
T cd05075           1 LALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPS   80 (272)
T ss_pred             CccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCC
Confidence            35678899999999999998  332  58999887543 344567889999999999999999999987532      24


Q ss_pred             ceEEEeecCCCCHHHhhhcCC-CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          142 PILVFEYGEYTTLRDRIFGAP-QPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~-~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                      .+++|||+++|+|.+++.... ......+++..+..++.|++.||.|||   ..+|+||||||+||++++++.+||+|||
T Consensus        81 ~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg  157 (272)
T cd05075          81 PVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLS---SKSFIHRDLAARNCMLNENMNVCVADFG  157 (272)
T ss_pred             cEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHH---HCCeeccccchhheEEcCCCCEEECCCC
Confidence            689999999999998874321 111135899999999999999999999   8999999999999999999999999999


Q ss_pred             CCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          221 ESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      ++................++..|+|||+..+..++.++||||||+++|||++ |+.||...
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~  218 (272)
T cd05075         158 LSKKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGV  218 (272)
T ss_pred             cccccCcccceecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            9987654432222223345678999999998889999999999999999999 89999753

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=1.7e-39  Score=285.58  Aligned_cols=203  Identities=21%  Similarity=0.252  Sum_probs=172.4

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ...++|++.+.||+|+||.||+|.. ++..+++|.+.....  ..+.+.+|+.++++++|+|++++++++. .+..+++|
T Consensus         3 ~~~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~--~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~   79 (260)
T cd05070           3 IPRESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTM--SPESFLEEAQIMKKLRHDKLVQLYAVVS-EEPIYIVT   79 (260)
T ss_pred             CchHHhhhhheeccccCceEEEEEecCCceeEEEEecCCCC--CHHHHHHHHHHHHhcCCCceEEEEeEEC-CCCcEEEE
Confidence            3456788899999999999999988 667899999876432  2356899999999999999999999875 45689999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++++|.+++.....   ..+++..+..++.+++.||.|||   +.+++|+||||+||++++++.++|+|||.+....
T Consensus        80 e~~~~~~L~~~~~~~~~---~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~  153 (260)
T cd05070          80 EYMSKGSLLDFLKDGEG---RALKLPNLVDMAAQVAAGMAYIE---RMNYIHRDLRSANILVGDGLVCKIADFGLARLIE  153 (260)
T ss_pred             EecCCCcHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCccceEEEeCCceEEeCCceeeeecc
Confidence            99999999999976432   25899999999999999999999   8999999999999999999999999999997765


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      ....... ....++..|+|||.+.+..++.++|+||||+++|+|++ |+.||...
T Consensus       154 ~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~  207 (260)
T cd05070         154 DNEYTAR-QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGM  207 (260)
T ss_pred             Ccccccc-cCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCC
Confidence            4332211 23345678999999988889999999999999999999 89999754

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=4.1e-39  Score=284.26  Aligned_cols=200  Identities=21%  Similarity=0.234  Sum_probs=172.7

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      .++|++.+.||+|+||.||+|.+  ++..|++|++... .......+.+|+.++++++|+||+++++++...+..++|||
T Consensus         8 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~-~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e   86 (267)
T cd06646           8 QHDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLE-PGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICME   86 (267)
T ss_pred             hhhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecC-ccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEe
Confidence            45799999999999999999998  7788999998654 22334567899999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |+++++|.+++....     .+++..+..++.|++.||.|||   +.+|+|+||+|+||+++.++.+||+|||++.....
T Consensus        87 ~~~~~~L~~~~~~~~-----~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~  158 (267)
T cd06646          87 YCGGGSLQDIYHVTG-----PLSELQIAYVCRETLQGLAYLH---SKGKMHRDIKGANILLTDNGDVKLADFGVAAKITA  158 (267)
T ss_pred             CCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEECCCCCEEECcCccceeecc
Confidence            999999999986543     5899999999999999999999   89999999999999999999999999999876643


Q ss_pred             CCceeeeecccccCCcccccccc---cCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKR---GGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ....  .....++..|+|||.+.   ...++.++|+||||+++|||++|+.||...
T Consensus       159 ~~~~--~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~  212 (267)
T cd06646         159 TIAK--RKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDL  212 (267)
T ss_pred             cccc--cCccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCcccc
Confidence            2211  13345888999999874   345788999999999999999999998644

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=2.1e-39  Score=286.51  Aligned_cols=203  Identities=19%  Similarity=0.236  Sum_probs=172.7

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CC---eEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QE---RLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~---~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      ++|++.+.||+|+||.||+|.+  ++   ..|++|.+...........+..|+.++++++||||+++++++.+++..++|
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv   83 (269)
T cd05065           4 SCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMII   83 (269)
T ss_pred             HHeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEEE
Confidence            3477889999999999999998  23   369999988665555667899999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||+++++|.+++.....    .+++.++..++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||++...
T Consensus        84 ~e~~~~~~L~~~l~~~~~----~~~~~~~~~i~~~l~~al~~lH---~~g~~H~dl~p~nili~~~~~~kl~dfg~~~~~  156 (269)
T cd05065          84 TEFMENGALDSFLRQNDG----QFTVIQLVGMLRGIAAGMKYLS---EMNYVHRDLAARNILVNSNLVCKVSDFGLSRFL  156 (269)
T ss_pred             EecCCCCcHHHHHhhCCC----CCCHHHHHHHHHHHHHHHHHHH---HCCEeecccChheEEEcCCCcEEECCCcccccc
Confidence            999999999999876543    6899999999999999999999   899999999999999999999999999998765


Q ss_pred             CCCCceee-eeccc--ccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          226 PEGETHII-TRSRF--GAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       226 ~~~~~~~~-~~~~~--gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      ........ .....  .+..|+|||++....++.++||||||+++|||++ |..||...
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~  215 (269)
T cd05065         157 EDDTSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDM  215 (269)
T ss_pred             ccCccccccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCC
Confidence            44322111 01111  2457999999998889999999999999999887 99999754

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.2e-40  Score=294.55  Aligned_cols=241  Identities=18%  Similarity=0.246  Sum_probs=199.0

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ..-|...+.||+|.|++|-+|+.  +|..||||++.+.. +.....++..|++-|+.++|||||+||.+......+|||+
T Consensus        17 AGLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiL   96 (864)
T KOG4717|consen   17 AGLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLIL   96 (864)
T ss_pred             eeeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEE
Confidence            34578889999999999999988  99999999998653 3344567889999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceee-CCCCceEEecCCCCccc
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILF-NEENVAKLFDFSESISI  225 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill-~~~~~~kl~Dfg~a~~~  225 (338)
                      |+-++|+|+++|.++..    .+++....+++.||+.|+.|+|   ...+|||||||+|+.+ .+-|.+||+|||++..+
T Consensus        97 ELGD~GDl~DyImKHe~----Gl~E~La~kYF~QI~~AI~YCH---qLHVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf  169 (864)
T KOG4717|consen   97 ELGDGGDLFDYIMKHEE----GLNEDLAKKYFAQIVHAISYCH---QLHVVHRDLKPENVVFFEKLGLVKLTDFGFSNKF  169 (864)
T ss_pred             EecCCchHHHHHHhhhc----cccHHHHHHHHHHHHHHHHHHh---hhhhhcccCCcceeEEeeecCceEeeeccccccC
Confidence            99999999999999875    7999999999999999999999   9999999999999876 56689999999999887


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCC-ccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHHHHHHHh--cCcc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFN-EKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQ--NNRF  302 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~~~~~~~--~~~~  302 (338)
                      .++...   ....|+..|.|||++.+..|+ +++||||||||||.|++|++||...++.+....++++-.....  ...-
T Consensus       170 ~PG~kL---~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeANDSETLTmImDCKYtvPshvS~eC  246 (864)
T KOG4717|consen  170 QPGKKL---TTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEANDSETLTMIMDCKYTVPSHVSKEC  246 (864)
T ss_pred             CCcchh---hcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccchhhhhhhhcccccCchhhhHHH
Confidence            776544   566899999999999999986 7899999999999999999999988775554444332111100  1123


Q ss_pred             ccccccccccCcCCcccH
Q 038823          303 TEIADPIIVQDLSCTETE  320 (338)
Q Consensus       303 ~~~~d~~l~~~~~~~~~~  320 (338)
                      ++++.++|..||..|.+.
T Consensus       247 rdLI~sMLvRdPkkRAsl  264 (864)
T KOG4717|consen  247 RDLIQSMLVRDPKKRASL  264 (864)
T ss_pred             HHHHHHHHhcCchhhccH
Confidence            345555566665555443

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=1.1e-38  Score=281.25  Aligned_cols=203  Identities=20%  Similarity=0.216  Sum_probs=175.7

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++|++.+.||+|+||.||+|..  +++.+++|.+....  .....+.+.+|+.++++++|+||+++++++.+.+..++||
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~   81 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVL   81 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence            5789999999999999999999  78899999886422  3334577899999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++++|.+++...... ...+++.++..++.+++.||.|||   +.+++|+||+|+||+++.++.++|+|||++....
T Consensus        82 e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~  157 (267)
T cd08224          82 ELADAGDLSRMIKHFKKQ-KRLIPERTIWKYFVQLCSALEHMH---SKRIMHRDIKPANVFITATGVVKLGDLGLGRFFS  157 (267)
T ss_pred             ecCCCCCHHHHHHHhccc-CCCcCHHHHHHHHHHHHHHHHHHH---hCCEecCCcChhhEEECCCCcEEEeccceeeecc
Confidence            999999999998653221 126899999999999999999999   8999999999999999999999999999987654


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      .....  .....++..|+|||.+.+..++.++|+||||+++|+|++|+.||..
T Consensus       158 ~~~~~--~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~  208 (267)
T cd08224         158 SKTTA--AHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYG  208 (267)
T ss_pred             CCCcc--cceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCccc
Confidence            43221  1334578899999999888899999999999999999999999964

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=6.1e-39  Score=287.67  Aligned_cols=198  Identities=18%  Similarity=0.242  Sum_probs=174.1

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      .+|+..+.||+|++|.||+|..  +++.+++|.+...... ..+.+.+|+.+++.++|+||+++++++..+...++||||
T Consensus        20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~-~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e~   98 (296)
T cd06654          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQP-KKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY   98 (296)
T ss_pred             cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcc-hHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeecc
Confidence            4688889999999999999997  7889999998765332 346788999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      +++++|.+++...      .+++.++..++.|++.||.|||   ..+|+|+||||+||+++.++.+||+|||++......
T Consensus        99 ~~~~~L~~~~~~~------~~~~~~~~~i~~ql~~aL~~LH---~~gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~  169 (296)
T cd06654          99 LAGGSLTDVVTET------CMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE  169 (296)
T ss_pred             cCCCCHHHHHHhc------CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCEEECccccchhcccc
Confidence            9999999998643      5889999999999999999999   899999999999999999999999999998765433


Q ss_pred             CceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ...  .....+++.|+|||.+.+..++.++|||||||++|+|++|+.||...
T Consensus       170 ~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~  219 (296)
T cd06654         170 QSK--RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNE  219 (296)
T ss_pred             ccc--cCcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCC
Confidence            221  13346888999999998888999999999999999999999999754

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=8e-39  Score=283.54  Aligned_cols=200  Identities=19%  Similarity=0.219  Sum_probs=177.5

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      ++|+..+.||.|++|.||+|..  +++.+++|.+...........+.+|+.+++.++|+||+++++++.++...++|+||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (274)
T cd06609           1 ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEY   80 (274)
T ss_pred             ChhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEe
Confidence            3678889999999999999998  78899999987654445556788999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      +++++|.+++...      .+++..+..++.|++.||.|||   +.+++|+||+|+||++++++.++|+|||++......
T Consensus        81 ~~~~~L~~~~~~~------~~~~~~~~~~~~ql~~~l~~lh---~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~  151 (274)
T cd06609          81 CGGGSCLDLLKPG------KLDETYIAFILREVLLGLEYLH---EEGKIHRDIKAANILLSEEGDVKLADFGVSGQLTST  151 (274)
T ss_pred             eCCCcHHHHHhhc------CCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCCCEEEcccccceeeccc
Confidence            9999999998754      5899999999999999999999   899999999999999999999999999999877543


Q ss_pred             CceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ...  .....++..|+|||++.+..++.++||||||+++|+|+||+.||....
T Consensus       152 ~~~--~~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~  202 (274)
T cd06609         152 MSK--RNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLH  202 (274)
T ss_pred             ccc--cccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCc
Confidence            211  134567889999999998889999999999999999999999997543

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.5e-40  Score=285.21  Aligned_cols=206  Identities=18%  Similarity=0.192  Sum_probs=179.1

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeec-----C
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLE-----T  139 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~-----~  139 (338)
                      .....|...+.||.|+||.|..+.+  +|..||||++.... +....++..+|+.+|+.++|+||+.+++.+..     -
T Consensus        19 ~i~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f   98 (359)
T KOG0660|consen   19 EIPRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKF   98 (359)
T ss_pred             eccceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeeccccccccc
Confidence            3445666678999999999999999  88999999998654 45567889999999999999999999999875     3


Q ss_pred             CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecC
Q 038823          140 PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDF  219 (338)
Q Consensus       140 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Df  219 (338)
                      +..|+|+|+|+ .+|...++.+.     .++...+..+..|+++||.|+|   +.+|+|||+||+|+|++.+..+||+||
T Consensus        99 ~DvYiV~elMe-tDL~~iik~~~-----~L~d~H~q~f~YQiLrgLKyiH---SAnViHRDLKPsNll~n~~c~lKI~DF  169 (359)
T KOG0660|consen   99 NDVYLVFELME-TDLHQIIKSQQ-----DLTDDHAQYFLYQILRGLKYIH---SANVIHRDLKPSNLLLNADCDLKICDF  169 (359)
T ss_pred             ceeEEehhHHh-hHHHHHHHcCc-----cccHHHHHHHHHHHHHhcchhh---cccccccccchhheeeccCCCEEeccc
Confidence            46899999997 89999998764     5999999999999999999999   999999999999999999999999999


Q ss_pred             CCCcccCCCCceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          220 SESISIPEGETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       220 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      |+|+..........-+..+.|..|.|||.+.+ ..|+.+.||||.|||+.||++|++-|.+...
T Consensus       170 GLAR~~~~~~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~  233 (359)
T KOG0660|consen  170 GLARYLDKFFEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDY  233 (359)
T ss_pred             cceeeccccCcccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCch
Confidence            99998864322222266778999999998755 5699999999999999999999999987554

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-40  Score=294.90  Aligned_cols=204  Identities=19%  Similarity=0.256  Sum_probs=184.3

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcce
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      ...+.|+.-+.||+||||.||-+..  +|..+|.|++.+..  ........++|-.+|.+++.+.||.+-..+.+.+.++
T Consensus       182 vt~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LC  261 (591)
T KOG0986|consen  182 VTKNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALC  261 (591)
T ss_pred             ccccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceE
Confidence            3456788889999999999999987  88889998886442  2334456789999999999999999999999999999


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      +|+..|.||+|.-+|.+.+.   ..+++..+..++.+|+.||.+||   ...||+||+||+|||||++|+++|+|+|+|.
T Consensus       262 lVLtlMNGGDLkfHiyn~g~---~gF~e~ra~FYAAEi~cGLehlH---~~~iVYRDLKPeNILLDd~GhvRISDLGLAv  335 (591)
T KOG0986|consen  262 LVLTLMNGGDLKFHIYNHGN---PGFDEQRARFYAAEIICGLEHLH---RRRIVYRDLKPENILLDDHGHVRISDLGLAV  335 (591)
T ss_pred             EEEEeecCCceeEEeeccCC---CCCchHHHHHHHHHHHhhHHHHH---hcceeeccCChhheeeccCCCeEeeccceEE
Confidence            99999999999999988875   36999999999999999999999   9999999999999999999999999999999


Q ss_pred             ccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .++.+...   ...+||.+|||||++.++.|+...|+|||||++|||+.|+.||...
T Consensus       336 ei~~g~~~---~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~  389 (591)
T KOG0986|consen  336 EIPEGKPI---RGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQR  389 (591)
T ss_pred             ecCCCCcc---ccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhh
Confidence            99887655   5568999999999999999999999999999999999999999753

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.2e-39  Score=283.21  Aligned_cols=198  Identities=21%  Similarity=0.310  Sum_probs=175.7

Q ss_pred             hcCCCcCCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeec
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYG  149 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  149 (338)
                      .++|++.+.||.|+||.||+|...++.|++|.+.....  ..+.+.+|+.++++++|+||+++++++.+.+..++||||+
T Consensus         5 ~~~~~~~~~ig~g~~g~v~~~~~~~~~v~iK~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   82 (256)
T cd05039           5 SKELKLGATIGKGEFGDVMLGDYRGQKVAVKCLKDDST--AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYM   82 (256)
T ss_pred             hhhccceeeeecCCCceEEEEEecCcEEEEEEeccchh--HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEec
Confidence            45788899999999999999999999999999976533  4578899999999999999999999999999999999999


Q ss_pred             CCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCC
Q 038823          150 EYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGE  229 (338)
Q Consensus       150 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~  229 (338)
                      ++++|.+++.....   ..+++..+..++.|++.||.|||   ..+++|+||||+||+++.++.+||+|||.+.......
T Consensus        83 ~~~~L~~~~~~~~~---~~~~~~~~~~~~~qi~~~l~~lh---~~~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~  156 (256)
T cd05039          83 AKGSLVDYLRSRGR---AVITLAQQLGFALDVCEGMEYLE---EKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQ  156 (256)
T ss_pred             CCCcHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHH---hCCccchhcccceEEEeCCCCEEEccccccccccccc
Confidence            99999999976542   25899999999999999999999   9999999999999999999999999999988764332


Q ss_pred             ceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          230 THIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       230 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      .     ...++..|+|||++..+.++.++||||||+++|+|++ |+.||...
T Consensus       157 ~-----~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~  203 (256)
T cd05039         157 D-----SGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI  203 (256)
T ss_pred             c-----cCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence            1     2234668999999988889999999999999999997 99999754

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=100.00  E-value=2.1e-39  Score=291.30  Aligned_cols=201  Identities=17%  Similarity=0.247  Sum_probs=172.2

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      ++|...+.||+|+||.||+|..  ++..||+|.+...........+.+|+.++++++|+||+++++++.+.+..++||||
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~e~   85 (301)
T cd07873           6 ETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY   85 (301)
T ss_pred             cceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEEec
Confidence            4688889999999999999998  68899999987553333345678999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      ++ ++|.+++.....    .+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||++......
T Consensus        86 ~~-~~l~~~l~~~~~----~~~~~~~~~~~~qi~~aL~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~  157 (301)
T cd07873          86 LD-KDLKQYLDDCGN----SINMHNVKLFLFQLLRGLNYCH---RRKVLHRDLKPQNLLINERGELKLADFGLARAKSIP  157 (301)
T ss_pred             cc-cCHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHHHEEECCCCcEEECcCcchhccCCC
Confidence            98 699998876543    6889999999999999999999   899999999999999999999999999998765432


Q ss_pred             CceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ...  .....++..|+|||.+.+. .++.++||||||+++|+|+||++||....
T Consensus       158 ~~~--~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~  209 (301)
T cd07873         158 TKT--YSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGST  209 (301)
T ss_pred             CCc--ccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            211  1334578899999988654 47889999999999999999999997543

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=2.6e-39  Score=297.80  Aligned_cols=198  Identities=18%  Similarity=0.208  Sum_probs=170.1

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCC-----
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETP-----  140 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-----  140 (338)
                      ..++|...+.||+|+||.||++..  ++..||+|.+.... .......+.+|+.+++.++||||+++++++...+     
T Consensus        19 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   98 (359)
T cd07876          19 VLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEF   98 (359)
T ss_pred             hhhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCcccc
Confidence            457899999999999999999998  78899999997543 3334567889999999999999999999986543     


Q ss_pred             -cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecC
Q 038823          141 -IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDF  219 (338)
Q Consensus       141 -~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Df  219 (338)
                       ..++||||++ ++|.+.+..       .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+||+||
T Consensus        99 ~~~~lv~e~~~-~~l~~~~~~-------~~~~~~~~~~~~qi~~~L~~LH---~~~ivHrDlkp~NIl~~~~~~~kl~Df  167 (359)
T cd07876          99 QDVYLVMELMD-ANLCQVIHM-------ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDF  167 (359)
T ss_pred             ceeEEEEeCCC-cCHHHHHhc-------cCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCCCEEEecC
Confidence             4699999998 567776632       4788999999999999999999   999999999999999999999999999


Q ss_pred             CCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          220 SESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       220 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      |+++.......   .....||..|+|||.+.+..++.++|||||||++|+|+||+.||...
T Consensus       168 g~a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~  225 (359)
T cd07876         168 GLARTACTNFM---MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGT  225 (359)
T ss_pred             CCccccccCcc---CCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCC
Confidence            99876533221   13456899999999999889999999999999999999999999754

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.6e-39  Score=285.90  Aligned_cols=203  Identities=20%  Similarity=0.305  Sum_probs=174.4

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCe----EEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QER----LISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~----~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      .+|.+.+.||+|+||.||+|.+  ++.    .+++|.+...........+.+|+.++++++|+||+++++++.. ...++
T Consensus         7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~   85 (279)
T cd05057           7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS-SQVQL   85 (279)
T ss_pred             HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-CceEE
Confidence            4578889999999999999997  332    5899988766555556788999999999999999999999987 78899


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ||||+++|+|.+++.....    .+++..++.++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||.++.
T Consensus        86 v~e~~~~g~L~~~l~~~~~----~~~~~~~~~~~~qi~~~l~~LH---~~~i~H~di~p~nil~~~~~~~kL~dfg~~~~  158 (279)
T cd05057          86 ITQLMPLGCLLDYVRNHKD----NIGSQYLLNWCVQIAKGMSYLE---EKRLVHRDLAARNVLVKTPQHVKITDFGLAKL  158 (279)
T ss_pred             EEecCCCCcHHHHHHhccC----CCCHHHHHHHHHHHHHHHHHHH---hCCEEecccCcceEEEcCCCeEEECCCccccc
Confidence            9999999999999977543    6899999999999999999999   89999999999999999999999999999987


Q ss_pred             cCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          225 IPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       225 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      ..............++..|+|||.+....++.++|+||||+++||++| |+.||....
T Consensus       159 ~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~  216 (279)
T cd05057         159 LDVDEKEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIP  216 (279)
T ss_pred             ccCcccceecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCC
Confidence            654433222122334578999999988889999999999999999999 999997643

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=100.00  E-value=5.5e-39  Score=281.50  Aligned_cols=201  Identities=17%  Similarity=0.174  Sum_probs=176.0

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeec
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYG  149 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  149 (338)
                      +|++.+.||+|+||.||++.+  ++..+++|.+.........+.+.+|+.+++.++|+||+++++++.+++.+++||||+
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   80 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYC   80 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeC
Confidence            477889999999999999998  788999999865444455677889999999999999999999999999999999999


Q ss_pred             CCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCC
Q 038823          150 EYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGE  229 (338)
Q Consensus       150 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~  229 (338)
                      ++++|.+++.....   ..+++..+..++.|++.||.|||   +.+++|+||||+||++++++.++|+|||.+.......
T Consensus        81 ~~~~l~~~~~~~~~---~~~~~~~~~~~~~~i~~al~~lH---~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~  154 (255)
T cd08219          81 DGGDLMQKIKLQRG---KLFPEDTILQWFVQMCLGVQHIH---EKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPG  154 (255)
T ss_pred             CCCcHHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCCcceEEECCCCcEEEcccCcceeecccc
Confidence            99999998865332   25889999999999999999999   8999999999999999999999999999987664432


Q ss_pred             ceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          230 THIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       230 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ..  .....|+..|+|||.+.+..++.++|+||||+++|+|++|+.||...
T Consensus       155 ~~--~~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~  203 (255)
T cd08219         155 AY--ACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQAN  203 (255)
T ss_pred             cc--cccccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCC
Confidence            21  13456888999999998888999999999999999999999999753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=100.00  E-value=9.9e-39  Score=283.51  Aligned_cols=200  Identities=17%  Similarity=0.250  Sum_probs=176.1

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      ..|+..+.||.|+||.||+|.+  ++..||+|.+...........+.+|+.+++++.|+||+++++++.+.+..++||||
T Consensus         4 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   83 (277)
T cd06640           4 ELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEY   83 (277)
T ss_pred             HhhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEec
Confidence            3477788999999999999998  68899999987654455567889999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      +++++|.+++...      ++++.++..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||++......
T Consensus        84 ~~~~~L~~~i~~~------~l~~~~~~~~~~~l~~~l~~lh---~~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~  154 (277)
T cd06640          84 LGGGSALDLLRAG------PFDEFQIATMLKEILKGLDYLH---SEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDT  154 (277)
T ss_pred             CCCCcHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH---hCCccCcCCChhhEEEcCCCCEEEcccccceeccCC
Confidence            9999999998643      5889999999999999999999   899999999999999999999999999998766443


Q ss_pred             CceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ...  .....++..|+|||++.+..++.++|+||||+++|||+||..||....
T Consensus       155 ~~~--~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~  205 (277)
T cd06640         155 QIK--RNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMH  205 (277)
T ss_pred             ccc--cccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcC
Confidence            221  133457889999999988889999999999999999999999997543

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.8e-40  Score=297.05  Aligned_cols=243  Identities=19%  Similarity=0.226  Sum_probs=198.2

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcC-CCchHHHHHHHHHHHHhccC-CcceeeeeeeeecCCcceEE
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNES-YSDSACKFSINNIVYAAQMD-HKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~-~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv  145 (338)
                      ....|++.+.||+||.+.||++.. +.+.+|+|+.... .+.+...-|.+|+.+|.+|+ |.+|++||+|-..++.+|+|
T Consensus       359 kg~~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmv  438 (677)
T KOG0596|consen  359 KGREYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMV  438 (677)
T ss_pred             CcchhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEE
Confidence            345688899999999999999999 7788888887644 35667888999999999997 99999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||-+ .+|..+|.....    .++...+..+..|++.|+.++|   ..+|||.||||.|+|+ -.|.+||+|||.|..+
T Consensus       439 mE~Gd-~DL~kiL~k~~~----~~~~~~lk~ywkqML~aV~~IH---~~gIVHSDLKPANFLl-VkG~LKLIDFGIA~aI  509 (677)
T KOG0596|consen  439 MECGD-IDLNKILKKKKS----IDPDWFLKFYWKQMLLAVKTIH---QHGIVHSDLKPANFLL-VKGRLKLIDFGIANAI  509 (677)
T ss_pred             eeccc-ccHHHHHHhccC----CCchHHHHHHHHHHHHHHHHHH---HhceeecCCCcccEEE-EeeeEEeeeechhccc
Confidence            99987 899999987754    3443388899999999999999   9999999999999998 4689999999999999


Q ss_pred             CCCCceeeeecccccCCcccccccccCC-----------CCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHHHH
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGV-----------FNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLK  294 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----------~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~~~  294 (338)
                      ....+.......+||+.||+||.+....           ++.++||||+|||||+|+.|+.||.....      ...   
T Consensus       510 ~~DTTsI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n------~~a---  580 (677)
T KOG0596|consen  510 QPDTTSIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQIIN------QIA---  580 (677)
T ss_pred             CccccceeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHHH------HHH---
Confidence            9888887778889999999999885432           56899999999999999999999974221      111   


Q ss_pred             HHHhcCccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          295 NYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       295 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                            ++..+.||.-.-++...+..   .+++.++..||+.||
T Consensus       581 ------Kl~aI~~P~~~Iefp~~~~~---~~li~~mK~CL~rdP  615 (677)
T KOG0596|consen  581 ------KLHAITDPNHEIEFPDIPEN---DELIDVMKCCLARDP  615 (677)
T ss_pred             ------HHHhhcCCCccccccCCCCc---hHHHHHHHHHHhcCc
Confidence                  12344444332222222222   238999999999988

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=100.00  E-value=6.3e-40  Score=299.63  Aligned_cols=242  Identities=21%  Similarity=0.287  Sum_probs=202.7

Q ss_pred             HHhhcCCCcCCccccCCCceEEEEEEC------CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCC
Q 038823           67 EIATNNYDERKFIKQDSTYKLYKGFWQ------ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETP  140 (338)
Q Consensus        67 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~------~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~  140 (338)
                      +...+.....++||.|.||.||+|.+.      .-.||||..+........+.|+.|..+|++++||||++++|.|.+. 
T Consensus       385 el~Re~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e~-  463 (974)
T KOG4257|consen  385 ELRRELITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVEQ-  463 (974)
T ss_pred             eeehhhccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeecc-
Confidence            344444556778999999999999982      2358999999877777789999999999999999999999999865 


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                      ..|+|||.++-|.|..+|..+..    .++..+...++.||+.||+|||   ++..|||||...|||+.+...+||+|||
T Consensus       464 P~WivmEL~~~GELr~yLq~nk~----sL~l~tL~ly~~Qi~talaYLe---SkrfVHRDIAaRNiLVsSp~CVKLaDFG  536 (974)
T KOG4257|consen  464 PMWIVMELAPLGELREYLQQNKD----SLPLRTLTLYCYQICTALAYLE---SKRFVHRDIAARNILVSSPQCVKLADFG  536 (974)
T ss_pred             ceeEEEecccchhHHHHHHhccc----cchHHHHHHHHHHHHHHHHHHH---hhchhhhhhhhhheeecCcceeeecccc
Confidence            67999999999999999988765    7999999999999999999999   9999999999999999999999999999


Q ss_pred             CCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccCCcccccHHHHHHHHHhc
Q 038823          221 ESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRTHGSVRHLIEYLKNYLQN  299 (338)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~~~~~~~l~~~~~~~~~~  299 (338)
                      +++.+.+...+.. +...-...|||||.+.-..++.+||||-|||++||+++ |..||....+.+-...+.        +
T Consensus       537 LSR~~ed~~yYka-S~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkNsDVI~~iE--------n  607 (974)
T KOG4257|consen  537 LSRYLEDDAYYKA-SRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKNSDVIGHIE--------N  607 (974)
T ss_pred             hhhhccccchhhc-cccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCccccccccceEEEec--------C
Confidence            9999887665544 34456788999999999999999999999999999988 999998766533222111        1


Q ss_pred             CccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          300 NRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       300 ~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                      +       .++.      ..+.|+..+..|+.+||..+|
T Consensus       608 G-------eRlP------~P~nCPp~LYslmskcWayeP  633 (974)
T KOG4257|consen  608 G-------ERLP------CPPNCPPALYSLMSKCWAYEP  633 (974)
T ss_pred             C-------CCCC------CCCCCChHHHHHHHHHhccCc
Confidence            1       1222      223456678899999999998

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=100.00  E-value=3.1e-39  Score=283.32  Aligned_cols=196  Identities=21%  Similarity=0.275  Sum_probs=170.0

Q ss_pred             hcCCCcCCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeee-cCCcceEEEee
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCL-ETPIPILVFEY  148 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~-~~~~~~lv~e~  148 (338)
                      ..+|.+.+.||+|+||.||+|...+..+++|.+...   ...+.+.+|+.++++++|+|++++++++. .++..++||||
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~k~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~   81 (256)
T cd05082           5 MKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKND---ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY   81 (256)
T ss_pred             HHhCeeeeeecccCCCeEEEEEEcCCcEEEEEeCCC---chHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEEC
Confidence            346888999999999999999999999999998644   22367889999999999999999999765 45678999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      +++++|.+++.....   ..+++..++.++.|++.||.|||   ..+++|+||||+||++++++.+||+|||++......
T Consensus        82 ~~~~~L~~~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~  155 (256)
T cd05082          82 MAKGSLVDYLRSRGR---SVLGGDCLLKFSLDVCEAMEYLE---ANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST  155 (256)
T ss_pred             CCCCcHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHH---hCCEeccccchheEEEcCCCcEEecCCccceecccc
Confidence            999999999876543   25889999999999999999999   899999999999999999999999999998765432


Q ss_pred             CceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCC
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDL  279 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~  279 (338)
                      .     ....++..|+|||++.+..++.++||||||+++|+|++ |+.||..
T Consensus       156 ~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~  202 (256)
T cd05082         156 Q-----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPR  202 (256)
T ss_pred             C-----CCCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCC
Confidence            2     22234568999999988889999999999999999998 9999874

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.1e-39  Score=296.91  Aligned_cols=192  Identities=17%  Similarity=0.138  Sum_probs=163.1

Q ss_pred             cccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhcc---CCcceeeeeeeeecCCcceEEEeecCC
Q 038823           79 IKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQM---DHKHILKLIGCCLETPIPILVFEYGEY  151 (338)
Q Consensus        79 lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l---~h~niv~l~~~~~~~~~~~lv~e~~~~  151 (338)
                      ||+|+||.||+|..  ++..||+|++....  ..........|..++...   .||||+++++++.+.+..++||||+++
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~   80 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG   80 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC
Confidence            79999999999998  68899999986432  222334556677777665   699999999999999999999999999


Q ss_pred             CCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCce
Q 038823          152 TTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH  231 (338)
Q Consensus       152 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~  231 (338)
                      |+|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||++.........
T Consensus        81 g~L~~~l~~~~-----~~~~~~~~~~~~qil~al~~LH---~~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~  152 (330)
T cd05586          81 GELFWHLQKEG-----RFSEDRAKFYIAELVLALEHLH---KYDIVYRDLKPENILLDATGHIALCDFGLSKANLTDNKT  152 (330)
T ss_pred             ChHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeEECCCCCEEEecCCcCcCCCCCCCC
Confidence            99999987654     5899999999999999999999   899999999999999999999999999998754332211


Q ss_pred             eeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          232 IITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       232 ~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                        .....||..|+|||.+.+. .++.++|||||||++|+|+||+.||...
T Consensus       153 --~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~  200 (330)
T cd05586         153 --TNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAE  200 (330)
T ss_pred             --ccCccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCC
Confidence              1345689999999998765 4899999999999999999999999753

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=6.3e-39  Score=281.61  Aligned_cols=231  Identities=18%  Similarity=0.220  Sum_probs=182.0

Q ss_pred             ccccCCCceEEEEEE----CCeEEEEEEeCcCCC-chHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCC
Q 038823           78 FIKQDSTYKLYKGFW----QERLISVMKYNESYS-DSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYT  152 (338)
Q Consensus        78 ~lg~G~~g~Vy~~~~----~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~g  152 (338)
                      .||+|+||.||+|.+    ++..+|+|++..... ....+.+.+|+.+++.+.|+||+++++++. .+..++||||++++
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-~~~~~lv~e~~~~~   80 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICE-AESWMLVMELAELG   80 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEc-CCCcEEEEecCCCC
Confidence            589999999999975    578899999875432 334567899999999999999999999886 45679999999999


Q ss_pred             CHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCcee
Q 038823          153 TLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHI  232 (338)
Q Consensus       153 sL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~  232 (338)
                      +|.+++....     .+++..+..++.|++.||.|||   +.+++|+||||.||+++.++.+||+|||++..........
T Consensus        81 ~L~~~l~~~~-----~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~  152 (257)
T cd05116          81 PLNKFLQKNK-----HVTEKNITELVHQVSMGMKYLE---ETNFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYY  152 (257)
T ss_pred             cHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCEeecccchhhEEEcCCCeEEECCCccccccCCCCCee
Confidence            9999997543     5899999999999999999999   8999999999999999999999999999998765543322


Q ss_pred             e-eecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccCCcccccHHHHHHHHHhcCcccccccccc
Q 038823          233 I-TRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPII  310 (338)
Q Consensus       233 ~-~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l  310 (338)
                      . .....++..|+|||.+....++.++|+||||+++|||+| |+.||.....    ..+...+    ..+...+     .
T Consensus       153 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~----~~~~~~i----~~~~~~~-----~  219 (257)
T cd05116         153 KAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKG----NEVTQMI----ESGERME-----C  219 (257)
T ss_pred             eecCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCH----HHHHHHH----HCCCCCC-----C
Confidence            1 122234578999999988889999999999999999998 9999975432    1222222    2211111     1


Q ss_pred             ccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          311 VQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                      ..        .....+.+++.+||+.||
T Consensus       220 ~~--------~~~~~l~~li~~~~~~~p  239 (257)
T cd05116         220 PQ--------RCPPEMYDLMKLCWTYGV  239 (257)
T ss_pred             CC--------CCCHHHHHHHHHHhccCc
Confidence            11        122357889999999887

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-39  Score=310.19  Aligned_cols=209  Identities=18%  Similarity=0.214  Sum_probs=175.3

Q ss_pred             HHhhcCCCcCCccccCCCceEEEEEE-CC-eEEEEEEeCcCCCchHHHHHHHHHHHHhccC-Ccceeeeeee-eec----
Q 038823           67 EIATNNYDERKFIKQDSTYKLYKGFW-QE-RLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGC-CLE----  138 (338)
Q Consensus        67 ~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~-~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~-~~~----  138 (338)
                      .....+.++.+.|.+|||+.||.|.+ .+ ..+|+|++... ++...+...+|+++|++|+ |+|||.+++. ...    
T Consensus        33 ~Vg~~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~-de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~  111 (738)
T KOG1989|consen   33 TVGSHRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVN-DEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSN  111 (738)
T ss_pred             EECCEEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecC-CHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCC
Confidence            34555677889999999999999999 44 89999999877 7778899999999999998 9999999993 321    


Q ss_pred             --CCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEE
Q 038823          139 --TPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKL  216 (338)
Q Consensus       139 --~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl  216 (338)
                        .-+.+|.||||.||+|-|++......   .|++..+++|+.++++|+++||.. +.+|||||||-+||||+.+++.||
T Consensus       112 ~~~~EvllLmEyC~gg~Lvd~mn~Rlq~---~lte~eVLkIf~dv~~AVa~mH~~-~pPiIHRDLKiENvLls~~g~~KL  187 (738)
T KOG1989|consen  112 NGVWEVLLLMEYCKGGSLVDFMNTRLQT---RLTEDEVLKIFYDVCEAVAAMHYL-KPPIIHRDLKIENVLLSADGNYKL  187 (738)
T ss_pred             CceeEEEeehhhccCCcHHHHHHHHHhc---cCChHHHHHHHHHHHHHHHHHhcC-CCccchhhhhhhheEEcCCCCEEe
Confidence              12578999999999999999865542   499999999999999999999955 667999999999999999999999


Q ss_pred             ecCCCCcccCCCCceee-------eecccccCCccccccc---ccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          217 FDFSESISIPEGETHII-------TRSRFGAWTYSAPEYK---RGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       217 ~Dfg~a~~~~~~~~~~~-------~~~~~gt~~y~aPE~~---~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ||||.+.......+...       .-....|+.|.|||.+   .+..+++|+|||||||+||-|+....||+..
T Consensus       188 CDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~s  261 (738)
T KOG1989|consen  188 CDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEES  261 (738)
T ss_pred             CcccccccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcC
Confidence            99998875543321100       0123478999999975   5677999999999999999999999999854

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=100.00  E-value=1.1e-38  Score=281.71  Aligned_cols=206  Identities=20%  Similarity=0.241  Sum_probs=175.3

Q ss_pred             HHHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcc
Q 038823           65 ELEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIP  142 (338)
Q Consensus        65 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~  142 (338)
                      |++.+++++.....||+|+||.||+|.+  ++..|++|.+... .....+.+.+|+.++++++|+||+++++++..++..
T Consensus         2 ~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~   80 (268)
T cd06624           2 EYEYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPER-DSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFF   80 (268)
T ss_pred             CcccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCC-CHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEE
Confidence            3456777888888999999999999998  6778999988765 334457789999999999999999999999999999


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCC--CHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC-CCceEEecC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPL--LLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE-ENVAKLFDF  219 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l--~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~-~~~~kl~Df  219 (338)
                      ++|+||+++++|.+++.....    .+  ++..+..++.|++.||.|||   ..+|+|+||||+||+++. ++.++|+||
T Consensus        81 ~lv~e~~~~~~L~~~l~~~~~----~~~~~~~~~~~~~~qi~~al~~lH---~~~i~h~dl~p~nil~~~~~~~~~l~df  153 (268)
T cd06624          81 KIFMEQVPGGSLSALLRSKWG----PLKDNEQTIIFYTKQILEGLKYLH---DNQIVHRDIKGDNVLVNTYSGVVKISDF  153 (268)
T ss_pred             EEEEecCCCCCHHHHHHHhcc----cCCCcHHHHHHHHHHHHHHHHHHH---HCCEeecCCCHHHEEEcCCCCeEEEecc
Confidence            999999999999999976432    34  78889999999999999999   899999999999999976 679999999


Q ss_pred             CCCcccCCCCceeeeecccccCCcccccccccCC--CCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          220 SESISIPEGETHIITRSRFGAWTYSAPEYKRGGV--FNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       220 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      |.+.........  .....++..|+|||++....  ++.++||||||+++|+|++|+.||...
T Consensus       154 g~~~~~~~~~~~--~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~  214 (268)
T cd06624         154 GTSKRLAGINPC--TETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIEL  214 (268)
T ss_pred             hhheecccCCCc--cccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccc
Confidence            998765432221  13345789999999986644  789999999999999999999999743

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>PHA03207 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=4e-39  Score=299.86  Aligned_cols=198  Identities=19%  Similarity=0.187  Sum_probs=172.8

Q ss_pred             hcCCCcCCccccCCCceEEEEEE----CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW----QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~----~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      ..+|.+.+.||+|+||.||++..    .+..|++|.+...      ....+|+.+|++++|+||+++++++...+..++|
T Consensus        91 ~~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~------~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv  164 (392)
T PHA03207         91 RMQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG------KTPGREIDILKTISHRAIINLIHAYRWKSTVCMV  164 (392)
T ss_pred             cCceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc------ccHHHHHHHHHhcCCCCccceeeeEeeCCEEEEE
Confidence            45799999999999999999976    3567899987654      3356899999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      ||++. ++|.+++....     .+++..++.++.|++.||.|||   ..+|+||||||+|||++.++.++|+|||++...
T Consensus       165 ~e~~~-~~l~~~l~~~~-----~l~~~~~~~i~~ql~~aL~~LH---~~givHrDlkp~Nill~~~~~~~l~DfG~a~~~  235 (392)
T PHA03207        165 MPKYK-CDLFTYVDRSG-----PLPLEQAITIQRRLLEALAYLH---GRGIIHRDVKTENIFLDEPENAVLGDFGAACKL  235 (392)
T ss_pred             ehhcC-CCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEcCCCCEEEccCcccccc
Confidence            99997 78988885443     6999999999999999999999   899999999999999999999999999999766


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      .............||+.|+|||++....++.++|||||||++|||++|+.||.....
T Consensus       236 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~  292 (392)
T PHA03207        236 DAHPDTPQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQV  292 (392)
T ss_pred             CcccccccccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCC
Confidence            544333222456799999999999988999999999999999999999999976554

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=100.00  E-value=1.1e-38  Score=284.85  Aligned_cols=209  Identities=23%  Similarity=0.266  Sum_probs=175.9

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE-------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCc
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW-------QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPI  141 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~-------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~  141 (338)
                      ..++|+..+.||+|+||.||+|..       ++..+++|.+...........+.+|+.++++++||||+++++++.+++.
T Consensus         3 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~   82 (288)
T cd05050           3 PRNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKP   82 (288)
T ss_pred             ChHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCc
Confidence            356799999999999999999986       3578999998766555556778999999999999999999999999999


Q ss_pred             ceEEEeecCCCCHHHhhhcCCC-----------------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCC
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQ-----------------PHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISL  204 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~-----------------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~  204 (338)
                      .++||||+++|+|.+++.....                 .....+++..++.++.|++.||.|||   ..+++||||||+
T Consensus        83 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH---~~~i~H~dl~p~  159 (288)
T cd05050          83 MCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLS---ERKFVHRDLATR  159 (288)
T ss_pred             cEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hCCeecccccHh
Confidence            9999999999999999974321                 01125788999999999999999999   899999999999


Q ss_pred             ceeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          205 CILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       205 Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      ||+++.++.++|+|||++.................+..|+|||.+.+..++.++|||||||++|||++ |..||...
T Consensus       160 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~  236 (288)
T cd05050         160 NCLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGM  236 (288)
T ss_pred             heEecCCCceEECccccceecccCccccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCC
Confidence            99999999999999999876543322211123345678999999988889999999999999999998 88898643

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=100.00  E-value=3.7e-39  Score=294.97  Aligned_cols=209  Identities=18%  Similarity=0.266  Sum_probs=172.6

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE-------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeeeec-C
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW-------QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCCLE-T  139 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~-------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~-~  139 (338)
                      ..++|.+.+.||+|+||.||+|.+       +++.||+|.+...........+.+|+.++.++ +|+||+++++++.. +
T Consensus         5 ~~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~   84 (343)
T cd05103           5 PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPG   84 (343)
T ss_pred             chhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCC
Confidence            446799999999999999999974       46789999997654444557788999999999 68999999998865 4


Q ss_pred             CcceEEEeecCCCCHHHhhhcCCCC-------------------------------------------------------
Q 038823          140 PIPILVFEYGEYTTLRDRIFGAPQP-------------------------------------------------------  164 (338)
Q Consensus       140 ~~~~lv~e~~~~gsL~~~l~~~~~~-------------------------------------------------------  164 (338)
                      ...++||||+++|+|.+++......                                                       
T Consensus        85 ~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (343)
T cd05103          85 GPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEE  164 (343)
T ss_pred             CceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhh
Confidence            5678999999999999998643210                                                       


Q ss_pred             -------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCceeeeecc
Q 038823          165 -------HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSR  237 (338)
Q Consensus       165 -------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  237 (338)
                             ....+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++...............
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~  241 (343)
T cd05103         165 EAEQEDLYKKVLTLEDLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDA  241 (343)
T ss_pred             hhhhhhhhhccCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCC
Confidence                   0024788899999999999999999   999999999999999999999999999998765433222222333


Q ss_pred             cccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          238 FGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       238 ~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      .++..|+|||.+.+..++.++||||||+++|+|++ |..||...
T Consensus       242 ~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~  285 (343)
T cd05103         242 RLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV  285 (343)
T ss_pred             CCCcceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCc
Confidence            45678999999988889999999999999999997 99999754

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=100.00  E-value=2.2e-38  Score=283.36  Aligned_cols=201  Identities=18%  Similarity=0.185  Sum_probs=173.2

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      .+.|.+.+.||.|+||.||+|..  ++..+++|.+... .....+.+.+|+.+++.++|+||+++++++..++..++|||
T Consensus        11 ~~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   89 (292)
T cd06644          11 NEVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETK-SEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIE   89 (292)
T ss_pred             chhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccC-CHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEe
Confidence            35688899999999999999998  6788999998765 44456778899999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |+++++|..++.+...    .+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.+||+|||++.....
T Consensus        90 ~~~~~~l~~~~~~~~~----~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~  162 (292)
T cd06644          90 FCPGGAVDAIMLELDR----GLTEPQIQVICRQMLEALQYLH---SMKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVK  162 (292)
T ss_pred             cCCCCcHHHHHHhhcC----CCCHHHHHHHHHHHHHHHHHHh---cCCeeecCCCcceEEEcCCCCEEEccCccceeccc
Confidence            9999999988765443    6899999999999999999999   89999999999999999999999999998865433


Q ss_pred             CCceeeeecccccCCcccccccc-----cCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKR-----GGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ....  .....++..|+|||++.     ...++.++|||||||++|+|++|+.||...
T Consensus       163 ~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~  218 (292)
T cd06644         163 TLQR--RDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHEL  218 (292)
T ss_pred             cccc--cceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCccc
Confidence            2111  13445788999999884     344788999999999999999999999653

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=100.00  E-value=8.1e-39  Score=280.70  Aligned_cols=201  Identities=26%  Similarity=0.342  Sum_probs=175.2

Q ss_pred             CccccCCCceEEEEEE--C---CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCC
Q 038823           77 KFIKQDSTYKLYKGFW--Q---ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEY  151 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~--~---~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~  151 (338)
                      +.||+|+||.||+|.+  .   +..+++|.+.........+.+.+|+..+..++|+||+++++++.+....++||||+++
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEG   80 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEeccC
Confidence            4689999999999999  3   7889999998765444567889999999999999999999999999999999999999


Q ss_pred             CCHHHhhhcCCCC----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          152 TTLRDRIFGAPQP----HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       152 gsL~~~l~~~~~~----~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      ++|.+++......    ....+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.+||+|||.+.....
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~  157 (262)
T cd00192          81 GDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLA---SKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYD  157 (262)
T ss_pred             CcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHH---cCCcccCccCcceEEECCCCcEEEccccccccccc
Confidence            9999999875211    0126999999999999999999999   89999999999999999999999999999988765


Q ss_pred             CCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      ...........++..|+|||.+....++.++||||||+++|+|++ |..||...
T Consensus       158 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~  211 (262)
T cd00192         158 DDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGL  211 (262)
T ss_pred             ccccccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCC
Confidence            443222245567889999999988889999999999999999999 69999865

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=100.00  E-value=6.1e-39  Score=282.20  Aligned_cols=203  Identities=19%  Similarity=0.226  Sum_probs=170.9

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      ..++|.+...||+|++|.||+|.+ .+..+++|.+....  ...+.+.+|+.++++++|+|++++++++. .+..++|||
T Consensus         4 ~~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~--~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e   80 (260)
T cd05069           4 PRESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGT--MMPEAFLQEAQIMKKLRHDKLVPLYAVVS-EEPIYIVTE   80 (260)
T ss_pred             ChHHeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCC--ccHHHHHHHHHHHHhCCCCCeeeEEEEEc-CCCcEEEEE
Confidence            345688889999999999999998 55579999876542  22366889999999999999999999875 456899999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |+++++|.+++.....   ..+++..+..++.|++.||.|||   +.+++|+||+|+||++++++.++|+|||.+.....
T Consensus        81 ~~~~~~L~~~~~~~~~---~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~  154 (260)
T cd05069          81 FMGKGSLLDFLKEGDG---KYLKLPQLVDMAAQIADGMAYIE---RMNYIHRDLRAANILVGDNLVCKIADFGLARLIED  154 (260)
T ss_pred             cCCCCCHHHHHhhCCC---CCCCHHHHHHHHHHHHHHHHHHH---hCCEeecccCcceEEEcCCCeEEECCCccceEccC
Confidence            9999999999976432   25899999999999999999999   89999999999999999999999999999976644


Q ss_pred             CCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      ..... .....++..|+|||...+..++.++||||||+++|+|+| |+.||....
T Consensus       155 ~~~~~-~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~  208 (260)
T cd05069         155 NEYTA-RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMV  208 (260)
T ss_pred             Ccccc-cCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence            32211 123346778999999988889999999999999999999 999997543

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=100.00  E-value=3.7e-39  Score=286.23  Aligned_cols=197  Identities=19%  Similarity=0.259  Sum_probs=173.2

Q ss_pred             CCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecC
Q 038823           73 YDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGE  150 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~  150 (338)
                      |+..+.||+|+||.||+|.+  ++..||+|.+.........+.+.+|+.++++++|+||+++++++...+..++||||++
T Consensus         6 y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   85 (277)
T cd06642           6 FTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYLG   85 (277)
T ss_pred             HHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEccC
Confidence            55667899999999999998  6788999998765444556778999999999999999999999999999999999999


Q ss_pred             CCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCc
Q 038823          151 YTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGET  230 (338)
Q Consensus       151 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~  230 (338)
                      +++|.+++...      .+++..+..++.|++.||.|||   ..+++|+||+|+||++++++.++|+|||++........
T Consensus        86 ~~~L~~~~~~~------~~~~~~~~~~~~~i~~~l~~lH---~~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~  156 (277)
T cd06642          86 GGSALDLLKPG------PLEETYIATILREILKGLDYLH---SERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQI  156 (277)
T ss_pred             CCcHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHh---cCCeeccCCChheEEEeCCCCEEEccccccccccCcch
Confidence            99999988542      5899999999999999999999   89999999999999999999999999999876544321


Q ss_pred             eeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          231 HIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       231 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .  .....++..|+|||++.+..++.++|+||||+++|||+||+.||...
T Consensus       157 ~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~  204 (277)
T cd06642         157 K--RNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDL  204 (277)
T ss_pred             h--hhcccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCccc
Confidence            1  12345788999999999888999999999999999999999998754

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.3e-39  Score=283.06  Aligned_cols=205  Identities=22%  Similarity=0.301  Sum_probs=176.2

Q ss_pred             HHhhcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           67 EIATNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        67 ~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      +...++|.+.+.||+|+||.||+|.+ ++..+++|.+.....  ..+.+.+|+.++++++|+||+++++++......++|
T Consensus         2 ~~~~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v   79 (261)
T cd05034           2 EIPRESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTM--SPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIV   79 (261)
T ss_pred             ccchhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCcc--CHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEE
Confidence            34567899999999999999999998 667899999875422  336788999999999999999999999988899999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||+++++|.+++.....   ..+++..+..++.+++.||.|||   +.+++|+||+|+||++++++.+||+|||.+...
T Consensus        80 ~e~~~~~~L~~~i~~~~~---~~~~~~~~~~~~~~i~~al~~lh---~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~  153 (261)
T cd05034          80 TEYMSKGSLLDFLKSGEG---KKLRLPQLVDMAAQIAEGMAYLE---SRNYIHRDLAARNILVGENLVCKIADFGLARLI  153 (261)
T ss_pred             EeccCCCCHHHHHhcccc---CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcchheEEEcCCCCEEECccccceec
Confidence            999999999999976542   25899999999999999999999   899999999999999999999999999998776


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      ........ ....++..|+|||.+.+..++.++|+||||+++|+|+| |+.||...
T Consensus       154 ~~~~~~~~-~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~  208 (261)
T cd05034         154 EDDEYTAR-EGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGM  208 (261)
T ss_pred             cchhhhhh-hccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCC
Confidence            54221111 22234568999999998889999999999999999999 99999754

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=5.5e-39  Score=283.33  Aligned_cols=203  Identities=19%  Similarity=0.186  Sum_probs=175.1

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++|++.+.||+|++|.||+|..  ++..+++|.+....  .......+.+|+.+++.++|+||+++++++.+++..+++|
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL   81 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEE
Confidence            4688889999999999999997  88899999876532  2334567889999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++++|.+++...... ...+++..++.++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||++....
T Consensus        82 e~~~~~~L~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~  157 (267)
T cd08229          82 ELADAGDLSRMIKHFKKQ-KRLIPEKTVWKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFS  157 (267)
T ss_pred             EecCCCCHHHHHHHhhcc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEECcchhhhccc
Confidence            999999999988643211 126899999999999999999999   9999999999999999999999999999987664


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      .....  .....++..|+|||.+.+..++.++|+||||+++|+|++|..||..
T Consensus       158 ~~~~~--~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~  208 (267)
T cd08229         158 SKTTA--AHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYG  208 (267)
T ss_pred             cCCcc--cccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCccc
Confidence            43221  1334588899999999888899999999999999999999999964

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=100.00  E-value=4e-39  Score=293.74  Aligned_cols=213  Identities=20%  Similarity=0.264  Sum_probs=177.7

Q ss_pred             HHHHhhcCCCcCCccccCCCceEEEEEE---------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeee
Q 038823           65 ELEIATNNYDERKFIKQDSTYKLYKGFW---------QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIG  134 (338)
Q Consensus        65 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~---------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~  134 (338)
                      +|+....+|.+.+.||+|+||.||+|..         .+..||+|.+.........+.+.+|+.+++++ +|+||+++++
T Consensus         6 ~~~~~~~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~   85 (334)
T cd05100           6 KWELSRTRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLG   85 (334)
T ss_pred             ccccCHhHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeE
Confidence            4455556799999999999999999975         12368999887654555667899999999999 7999999999


Q ss_pred             eeecCCcceEEEeecCCCCHHHhhhcCCC-----------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCC
Q 038823          135 CCLETPIPILVFEYGEYTTLRDRIFGAPQ-----------PHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLIS  203 (338)
Q Consensus       135 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~-----------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~  203 (338)
                      +|...+..++++||+++|+|.+++.....           .....+++.+++.++.|++.||.|||   ..+++||||||
T Consensus        86 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH---~~givH~dlkp  162 (334)
T cd05100          86 ACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLA---SQKCIHRDLAA  162 (334)
T ss_pred             EEccCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHH---HCCeecccccc
Confidence            99999999999999999999999975321           01125889999999999999999999   89999999999


Q ss_pred             CceeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          204 LCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       204 ~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      +||+++.++.+||+|||+++...............++..|+|||.+.+..++.++||||||+++|||++ |..||...
T Consensus       163 ~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~  240 (334)
T cd05100         163 RNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGI  240 (334)
T ss_pred             ceEEEcCCCcEEECCcccceecccccccccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCC
Confidence            999999999999999999876654322221123334568999999998889999999999999999999 88998753

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-38  Score=283.35  Aligned_cols=201  Identities=17%  Similarity=0.181  Sum_probs=174.6

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      .++|.+.+.||.|+||.||+|.+  ++..+++|.+... .....+.+.+|+.++++++|+||+++++++.+++..++|||
T Consensus         4 ~~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (280)
T cd06611           4 NDIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIE-SEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIE   82 (280)
T ss_pred             hhHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeC-CHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEee
Confidence            45688889999999999999998  6788999998755 44455778899999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |+++++|.+++.....    .+++..+..++.|++.||.|||   +.+|+|+||+|+||+++.++.++|+|||++.....
T Consensus        83 ~~~~~~L~~~~~~~~~----~l~~~~~~~~~~ql~~~l~~lh---~~~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~  155 (280)
T cd06611          83 FCDGGALDSIMLELER----GLTEPQIRYVCRQMLEALNFLH---SHKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKS  155 (280)
T ss_pred             ccCCCcHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEECCCCCEEEccCccchhhcc
Confidence            9999999999876543    6999999999999999999999   89999999999999999999999999998866543


Q ss_pred             CCceeeeecccccCCcccccccc-----cCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKR-----GGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ....  .....++..|+|||.+.     ...++.++|+||||+++|+|++|+.||...
T Consensus       156 ~~~~--~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~  211 (280)
T cd06611         156 TLQK--RDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHEL  211 (280)
T ss_pred             cccc--cceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccC
Confidence            2211  13445888999999874     344788999999999999999999999754

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=100.00  E-value=4.9e-39  Score=282.79  Aligned_cols=204  Identities=18%  Similarity=0.238  Sum_probs=174.3

Q ss_pred             HHhhcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           67 EIATNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        67 ~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      +...++|.+.+.||+|+||.||+|.+ ++..+++|.+...  ......+.+|+.++++++|+||+++++++.+ ...+++
T Consensus         2 ~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~v   78 (260)
T cd05073           2 EIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPG--SMSVEAFLAEANVMKTLQHDKLVKLHAVVTK-EPIYII   78 (260)
T ss_pred             cccccceeEEeEecCccceEEEEEEecCCccEEEEecCCC--hhHHHHHHHHHHHHHhcCCCCcceEEEEEcC-CCeEEE
Confidence            34567789999999999999999998 6677999987754  2234678899999999999999999999887 778999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||+++++|.+++.....   ..+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.+||+|||.+...
T Consensus        79 ~e~~~~~~L~~~~~~~~~---~~~~~~~~~~~~~~l~~aL~~lH---~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~  152 (260)
T cd05073          79 TEFMAKGSLLDFLKSDEG---SKQPLPKLIDFSAQIAEGMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVI  152 (260)
T ss_pred             EEeCCCCcHHHHHHhCCc---cccCHHHHHHHHHHHHHHHHHHH---hCCccccccCcceEEEcCCCcEEECCCcceeec
Confidence            999999999999976432   25889999999999999999999   899999999999999999999999999998766


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      ....... .....++..|+|||++....++.++|+||||+++|+++| |+.||...
T Consensus       153 ~~~~~~~-~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~  207 (260)
T cd05073         153 EDNEYTA-REGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGM  207 (260)
T ss_pred             cCCCccc-ccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCC
Confidence            5432221 133346678999999988889999999999999999999 99999754

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=7.6e-40  Score=269.29  Aligned_cols=211  Identities=17%  Similarity=0.188  Sum_probs=176.8

Q ss_pred             HHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCC---
Q 038823           66 LEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETP---  140 (338)
Q Consensus        66 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~---  140 (338)
                      +....++|.+.+.||+|||+.||.+..  +++.+|+|++.-. +..+.+..++|++..++++|||++++++++..+.   
T Consensus        16 v~In~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~-~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~   94 (302)
T KOG2345|consen   16 VIINNKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCH-SQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDG   94 (302)
T ss_pred             EEEcCceEEEeeeecCCCceeeeeecccCcccchhhheeecc-chHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccC
Confidence            345667899999999999999999998  8899999999766 3566788999999999999999999999986543   


Q ss_pred             --cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEec
Q 038823          141 --IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFD  218 (338)
Q Consensus       141 --~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~D  218 (338)
                        ..|++++|...|+|.+.+....... ..+++.+.+.|+.++++||.+||.. ..+++||||||.|||+.+++.++|.|
T Consensus        95 ~~~~yll~Pyy~~Gsl~d~i~~~k~kg-~~~sE~~iL~if~gic~gL~~lH~~-~~~yAH~DiKP~NILls~~~~~vl~D  172 (302)
T KOG2345|consen   95 KHEAYLLLPYYKRGSLLDEIERLKIKG-NFVSEAQILWIFLGICRGLEALHEK-EPPYAHRDIKPANILLSDSGLPVLMD  172 (302)
T ss_pred             ceeEEEEeehhccccHHHHHHHHhhcC-CccCHHHHHHHHHHHHHHHHHHhcc-CCcccccCCCcceeEecCCCceEEEe
Confidence              4899999999999999987654322 3699999999999999999999943 22499999999999999999999999


Q ss_pred             CCCCcccCCCCce-------eeeecccccCCccccccccc---CCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          219 FSESISIPEGETH-------IITRSRFGAWTYSAPEYKRG---GVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       219 fg~a~~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ||.++..+..-..       ........|..|.|||.+.-   ...+.++|||||||+||+|+.|..||+.
T Consensus       173 ~GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~  243 (302)
T KOG2345|consen  173 LGSATQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFER  243 (302)
T ss_pred             ccCccccceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchH
Confidence            9998765432110       01123457899999999854   4588999999999999999999999985

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=9.4e-39  Score=284.56  Aligned_cols=200  Identities=23%  Similarity=0.258  Sum_probs=169.2

Q ss_pred             cCCCcCCccccCCCceEEEEEE------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeec--CCcc
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW------QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLE--TPIP  142 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~  142 (338)
                      .+|.+.+.||+|+||.||+|..      ++..|++|.+... .....+.+.+|++++++++||||+++++++..  ....
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   82 (284)
T cd05081           4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHS-TAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL   82 (284)
T ss_pred             ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccC-CHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCce
Confidence            4688889999999999999974      5778999998755 34445778999999999999999999998754  3468


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSES  222 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a  222 (338)
                      ++||||+++++|.+++.....    .+++..+..++.|++.||.|||   ..+++|+||||+||++++++.+||+|||++
T Consensus        83 ~lv~e~~~~~~L~~~l~~~~~----~l~~~~~~~~~~~l~~aL~~LH---~~~i~H~dlkp~nili~~~~~~~l~dfg~~  155 (284)
T cd05081          83 RLVMEYLPYGSLRDYLQKHRE----RLDHRKLLLYASQICKGMEYLG---SKRYVHRDLATRNILVESENRVKIGDFGLT  155 (284)
T ss_pred             EEEEEecCCCCHHHHHHhcCc----CCCHHHHHHHHHHHHHHHHHHH---HCCceeccCCHhhEEECCCCeEEECCCccc
Confidence            999999999999999976532    5899999999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCCceee-eecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcC
Q 038823          223 ISIPEGETHII-TRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRD  278 (338)
Q Consensus       223 ~~~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~  278 (338)
                      ........... .....++..|+|||++.+..++.++||||||+++|||++|..|+.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~  212 (284)
T cd05081         156 KVLPQDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSC  212 (284)
T ss_pred             ccccCCCcceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCC
Confidence            87654432211 122234456999999988889999999999999999999987754

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=1e-38  Score=284.78  Aligned_cols=200  Identities=18%  Similarity=0.208  Sum_probs=166.0

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCc-hHHHHHHHHHHHHhcc---CCcceeeeeeeeec-----CC
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSD-SACKFSINNIVYAAQM---DHKHILKLIGCCLE-----TP  140 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~-~~~~~~~~e~~~l~~l---~h~niv~l~~~~~~-----~~  140 (338)
                      +|.+.+.||+|+||.||+|..  +++.||+|.+...... .....+.+|+.+++.+   +||||+++++++..     ..
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~   80 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRET   80 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCc
Confidence            477889999999999999998  7889999998754221 1223455677776665   69999999998864     23


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                      ..++||||++ ++|.+++.....   ..+++..+..++.|++.||.|||   +.+++||||||+||+++.++.+||+|||
T Consensus        81 ~~~lv~e~~~-~~l~~~~~~~~~---~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dikp~Nili~~~~~~kl~dfg  153 (288)
T cd07863          81 KVTLVFEHVD-QDLRTYLDKVPP---PGLPAETIKDLMRQFLRGLDFLH---ANCIVHRDLKPENILVTSGGQVKLADFG  153 (288)
T ss_pred             eEEEEEcccc-cCHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEECccC
Confidence            5799999999 589888876442   25899999999999999999999   8999999999999999999999999999


Q ss_pred             CCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          221 ESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ++.........   ....||..|+|||.+.+..++.++|||||||++|+|++|++||....
T Consensus       154 ~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~  211 (288)
T cd07863         154 LARIYSCQMAL---TPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNS  211 (288)
T ss_pred             ccccccCcccC---CCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCC
Confidence            98766433221   34467899999999988889999999999999999999999997543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.7e-38  Score=277.69  Aligned_cols=198  Identities=21%  Similarity=0.289  Sum_probs=171.0

Q ss_pred             CccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCCCHH
Q 038823           77 KFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLR  155 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~  155 (338)
                      ++||+|+||.||++.+ +++.|++|.+...........+.+|++++++++|+||+++++++.+.+..++||||+++++|.
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~   80 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLL   80 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcHH
Confidence            4689999999999998 688999999876644445678899999999999999999999999999999999999999999


Q ss_pred             HhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCceeeee
Q 038823          156 DRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITR  235 (338)
Q Consensus       156 ~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  235 (338)
                      +++.....    .+++..+..++.+++.||.|||   +.+++||||+|+||+++.++.+||+|||.+.............
T Consensus        81 ~~l~~~~~----~~~~~~~~~~~~~~~~~l~~lH---~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~  153 (251)
T cd05041          81 TFLRKKKN----RLTVKKLLQMSLDAAAGMEYLE---SKNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDG  153 (251)
T ss_pred             HHHHhcCC----CCCHHHHHHHHHHHHHHHHHHH---hCCEehhhcCcceEEEcCCCcEEEeeccccccccCCcceeccc
Confidence            99976543    5889999999999999999999   8999999999999999999999999999987654332221112


Q ss_pred             cccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          236 SRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       236 ~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      ...++..|+|||.+.++.++.++|+||||+++|||+| |..||....
T Consensus       154 ~~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~  200 (251)
T cd05041         154 LKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMS  200 (251)
T ss_pred             cCcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCC
Confidence            2334667999999988889999999999999999999 888987543

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=6.3e-39  Score=295.84  Aligned_cols=199  Identities=17%  Similarity=0.209  Sum_probs=171.3

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecC------
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLET------  139 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~------  139 (338)
                      ..++|...+.||+|+||.||+|..  .++.||+|++.... .......+.+|+.+++.++||||+++++++...      
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~  101 (364)
T cd07875          22 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF  101 (364)
T ss_pred             hhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeeccccccccc
Confidence            456899999999999999999998  78899999997643 334456788999999999999999999987643      


Q ss_pred             CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecC
Q 038823          140 PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDF  219 (338)
Q Consensus       140 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Df  219 (338)
                      ...++||||++ ++|.+.+..       .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+||+||
T Consensus       102 ~~~~lv~e~~~-~~l~~~~~~-------~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~Df  170 (364)
T cd07875         102 QDVYIVMELMD-ANLCQVIQM-------ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDF  170 (364)
T ss_pred             CeEEEEEeCCC-CCHHHHHHh-------cCCHHHHHHHHHHHHHHHHHHh---hCCeecCCCCHHHEEECCCCcEEEEeC
Confidence            34799999998 578777743       4788999999999999999999   899999999999999999999999999


Q ss_pred             CCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          220 SESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       220 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      |+++........   ....+|..|+|||++.+..++.++|||||||++|+|++|+.||....
T Consensus       171 G~a~~~~~~~~~---~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~  229 (364)
T cd07875         171 GLARTAGTSFMM---TPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTD  229 (364)
T ss_pred             CCccccCCCCcc---cCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCCC
Confidence            999765443221   34568999999999999899999999999999999999999997543

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=1.5e-38  Score=279.86  Aligned_cols=196  Identities=21%  Similarity=0.266  Sum_probs=163.0

Q ss_pred             CccccCCCceEEEEEE-----CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeee-cCCcceEEEeecC
Q 038823           77 KFIKQDSTYKLYKGFW-----QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCL-ETPIPILVFEYGE  150 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~-----~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~-~~~~~~lv~e~~~  150 (338)
                      +.||+|+||.||+|.+     .+..+|+|.+.........+.+.+|+.+++.++||||+++++++. .++..++||||+.
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~   80 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMK   80 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCC
Confidence            4689999999999987     235799999865544455678889999999999999999999876 4556899999999


Q ss_pred             CCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCc
Q 038823          151 YTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGET  230 (338)
Q Consensus       151 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~  230 (338)
                      +|+|.+++.....    .+++..+..++.|++.||.|||   ..+++||||||+|||++.++.+||+|||+++.......
T Consensus        81 ~~~L~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~  153 (262)
T cd05058          81 HGDLRNFIRSETH----NPTVKDLIGFGLQVAKGMEYLA---SKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEY  153 (262)
T ss_pred             CCCHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHH---hCCccccccCcceEEEcCCCcEEECCccccccccCCcc
Confidence            9999999976543    4678888999999999999999   89999999999999999999999999999876543221


Q ss_pred             ee--eeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhC-CCCcCC
Q 038823          231 HI--ITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTG-QSTRDL  279 (338)
Q Consensus       231 ~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG-~~p~~~  279 (338)
                      ..  ......++..|+|||.+.+..++.++||||||+++|||++| .+||..
T Consensus       154 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~  205 (262)
T cd05058         154 YSVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD  205 (262)
T ss_pred             eeecccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCC
Confidence            11  11233457789999999888899999999999999999995 666654

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=100.00  E-value=1.5e-38  Score=285.21  Aligned_cols=198  Identities=18%  Similarity=0.241  Sum_probs=174.8

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      .+|+..+.||+|+||.||+|..  +++.|++|.+..... ...+.+.+|+.+++.++|+||+++++++..++..++||||
T Consensus        19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~   97 (297)
T cd06656          19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQ-PKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY   97 (297)
T ss_pred             hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCcc-chHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeecc
Confidence            5688999999999999999997  789999999875432 3346788999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      +++++|.+++.+.      .+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.++|+|||++......
T Consensus        98 ~~~~~L~~~~~~~------~~~~~~~~~~~~~l~~~L~~LH---~~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~  168 (297)
T cd06656          98 LAGGSLTDVVTET------CMDEGQIAAVCRECLQALDFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE  168 (297)
T ss_pred             cCCCCHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEECcCccceEccCC
Confidence            9999999998653      5889999999999999999999   899999999999999999999999999998765443


Q ss_pred             CceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ...  .....+++.|+|||.+.+..++.++|+||||+++|+|++|+.||...
T Consensus       169 ~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~  218 (297)
T cd06656         169 QSK--RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNE  218 (297)
T ss_pred             ccC--cCcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            221  13346888999999998888999999999999999999999999753

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=1e-38  Score=293.41  Aligned_cols=199  Identities=17%  Similarity=0.196  Sum_probs=171.0

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCC----
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETP----  140 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~----  140 (338)
                      ...++|...+.||+|+||.||++..  .++.||+|++.... .......+.+|+.+++.++|+||+++++++....    
T Consensus        14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~   93 (355)
T cd07874          14 TVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEE   93 (355)
T ss_pred             hhhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeeccccccc
Confidence            3457899999999999999999988  78899999997653 3334567889999999999999999999886432    


Q ss_pred             --cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEec
Q 038823          141 --IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFD  218 (338)
Q Consensus       141 --~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~D  218 (338)
                        ..++||||++ ++|.+.+..       .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|
T Consensus        94 ~~~~~lv~e~~~-~~l~~~~~~-------~l~~~~~~~~~~qi~~aL~~LH---~~givHrDikp~Nill~~~~~~kl~D  162 (355)
T cd07874          94 FQDVYLVMELMD-ANLCQVIQM-------ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILD  162 (355)
T ss_pred             cceeEEEhhhhc-ccHHHHHhh-------cCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChHHEEECCCCCEEEee
Confidence              4699999998 577777643       4788999999999999999999   99999999999999999999999999


Q ss_pred             CCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          219 FSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       219 fg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ||+++........   ....||..|+|||.+.+..++.++|||||||++|+|++|+.||...
T Consensus       163 fg~~~~~~~~~~~---~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  221 (355)
T cd07874         163 FGLARTAGTSFMM---TPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGR  221 (355)
T ss_pred             CcccccCCCcccc---CCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            9999865443221   3456899999999999888999999999999999999999999754

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=100.00  E-value=2.8e-38  Score=278.56  Aligned_cols=201  Identities=18%  Similarity=0.268  Sum_probs=173.3

Q ss_pred             CCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCC-----chHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           72 NYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYS-----DSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~-----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      +|...+.||+|+||.||+|.. +++.+|+|.+.....     ......+.+|+.++++++|+||+++++++.+.+..++|
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv   80 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIF   80 (265)
T ss_pred             CccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEE
Confidence            477889999999999999998 788899998864321     22345688999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      +||+++++|.+++.+..     .+++..+..++.|++.||.|||   ..+++|+||+|+||++++++.++|+|||++...
T Consensus        81 ~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~  152 (265)
T cd06631          81 MEFVPGGSISSILNRFG-----PLPEPVFCKYTKQILDGVAYLH---NNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRL  152 (265)
T ss_pred             EecCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcCHHhEEECCCCeEEeccchhhHhh
Confidence            99999999999997653     5889999999999999999999   899999999999999999999999999988765


Q ss_pred             CCCCc----eeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          226 PEGET----HIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       226 ~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .....    ........|+..|+|||++.+..++.++|+||||+++|+|++|+.||...
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~  211 (265)
T cd06631         153 AWVGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASM  211 (265)
T ss_pred             hhccccccccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccC
Confidence            32111    11113446889999999999888999999999999999999999999754

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=100.00  E-value=1.6e-38  Score=278.47  Aligned_cols=199  Identities=20%  Similarity=0.248  Sum_probs=176.7

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      .++|+..+.||+|+||.||+|.+  ++..+++|.+.....   .+.+.+|+.++++++|+||+++++++.+....++++|
T Consensus         2 ~~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~---~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e   78 (256)
T cd06612           2 EEVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED---LQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVME   78 (256)
T ss_pred             cccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH---HHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEe
Confidence            46789999999999999999999  478999999865422   5789999999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |+++++|.+++.....    .+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++.....
T Consensus        79 ~~~~~~L~~~l~~~~~----~l~~~~~~~~~~~l~~~l~~lh---~~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~  151 (256)
T cd06612          79 YCGAGSVSDIMKITNK----TLTEEEIAAILYQTLKGLEYLH---SNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTD  151 (256)
T ss_pred             cCCCCcHHHHHHhCcc----CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEECCCCcEEEcccccchhccc
Confidence            9999999999976543    6899999999999999999999   89999999999999999999999999999887654


Q ss_pred             CCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ....  .....++..|+|||++.+..++.++||||||+++|+|++|+.||...
T Consensus       152 ~~~~--~~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~  202 (256)
T cd06612         152 TMAK--RNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDI  202 (256)
T ss_pred             Cccc--cccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCc
Confidence            3321  13445788999999998888999999999999999999999999754

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=2.4e-38  Score=282.21  Aligned_cols=202  Identities=16%  Similarity=0.214  Sum_probs=172.9

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      ++|++.+.||+|+||.||++.+  ++..+|+|.+...........+.+|+.++++++|+||+++++++...+..++||||
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (286)
T cd06622           1 DEIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEY   80 (286)
T ss_pred             ChhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEee
Confidence            3578889999999999999999  68899999887654445557789999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      +++++|.+++.....  ...+++..+..++.+++.||.|||.  ..+++|+||||+||+++.++.+||+|||.+......
T Consensus        81 ~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~LH~--~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~  156 (286)
T cd06622          81 MDAGSLDKLYAGGVA--TEGIPEDVLRRITYAVVKGLKFLKE--EHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVAS  156 (286)
T ss_pred             cCCCCHHHHHHhccc--cCCCCHHHHHHHHHHHHHHHHHHHh--cCCEeeCCCCHHHEEECCCCCEEEeecCCcccccCC
Confidence            999999998876421  1268999999999999999999993  259999999999999999999999999998765433


Q ss_pred             CceeeeecccccCCcccccccccCC------CCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGV------FNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~------~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ..    ....++..|+|||.+.+..      ++.++|+|||||++|+|++|+.||...
T Consensus       157 ~~----~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~  210 (286)
T cd06622         157 LA----KTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPE  210 (286)
T ss_pred             cc----ccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCc
Confidence            22    3345788999999985443      588999999999999999999999753

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.8e-38  Score=325.38  Aligned_cols=245  Identities=28%  Similarity=0.385  Sum_probs=203.3

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      ...|...+.||+|+||.||+|..  ++..||+|++......     ...|+..+++++|||||+++|+|.+.+..++|||
T Consensus       689 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~-----~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~E  763 (968)
T PLN00113        689 LSSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSI-----PSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHE  763 (968)
T ss_pred             HhhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCccc-----cHHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEe
Confidence            34578889999999999999997  7889999998654221     1346888999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |+++|+|.+++.        .++|..+.+++.|++.||+|||..++.+|+||||||+||+++.++.+++. ||.+.....
T Consensus       764 y~~~g~L~~~l~--------~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~~  834 (968)
T PLN00113        764 YIEGKNLSEVLR--------NLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCT  834 (968)
T ss_pred             CCCCCcHHHHHh--------cCCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-ecccccccc
Confidence            999999999994        37899999999999999999997767899999999999999999888876 665443322


Q ss_pred             CCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHHHHHHHhcCccccccc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIAD  307 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d  307 (338)
                      .      ....+|..|+|||++.+..++.++|||||||++|||+||+.||+...  .....+.+|++...........+|
T Consensus       835 ~------~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  906 (968)
T PLN00113        835 D------TKCFISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEF--GVHGSIVEWARYCYSDCHLDMWID  906 (968)
T ss_pred             C------CCccccccccCcccccCCCCCcccchhhHHHHHHHHHhCCCCCCccc--CCCCcHHHHHHHhcCccchhheeC
Confidence            1      23367899999999999899999999999999999999999996432  234567788887776666777788


Q ss_pred             cccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          308 PIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       308 ~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                      +.+.....  ....++.++.+++.+||+.+|
T Consensus       907 ~~~~~~~~--~~~~~~~~~~~l~~~Cl~~~P  935 (968)
T PLN00113        907 PSIRGDVS--VNQNEIVEVMNLALHCTATDP  935 (968)
T ss_pred             ccccCCCC--ccHHHHHHHHHHHHhhCcCCc
Confidence            87755422  345678889999999999998

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=100.00  E-value=1.8e-38  Score=280.83  Aligned_cols=198  Identities=19%  Similarity=0.217  Sum_probs=164.6

Q ss_pred             CccccCCCceEEEEEE--CCe--EEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcceEEEeecCC
Q 038823           77 KFIKQDSTYKLYKGFW--QER--LISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIPILVFEYGEY  151 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~--~~~--~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~~~  151 (338)
                      +.||+|+||.||+|.+  ++.  .+++|.+.........+.+.+|+.++.++ +||||+++++++...+..++||||+++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPH   80 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCC
Confidence            3689999999999998  333  46888887554445557889999999999 799999999999999999999999999


Q ss_pred             CCHHHhhhcCCC-----------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          152 TTLRDRIFGAPQ-----------PHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       152 gsL~~~l~~~~~-----------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                      |+|.+++.....           .....+++.++..++.|++.||.|||   +.+++|+||||+||++++++.+||+|||
T Consensus        81 ~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH---~~~i~H~dikp~nili~~~~~~kl~dfg  157 (270)
T cd05047          81 GNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFG  157 (270)
T ss_pred             CcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccccceEEEcCCCeEEECCCC
Confidence            999999875421           11125889999999999999999999   8999999999999999999999999999


Q ss_pred             CCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          221 ESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      ++.......   .......+..|+|||++....++.++||||||+++|||++ |..||...
T Consensus       158 l~~~~~~~~---~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~  215 (270)
T cd05047         158 LSRGQEVYV---KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGM  215 (270)
T ss_pred             Cccccchhh---hccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCcccc
Confidence            985332111   1112234567999999988889999999999999999997 99999653

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-39  Score=301.99  Aligned_cols=202  Identities=22%  Similarity=0.282  Sum_probs=178.3

Q ss_pred             CCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCC------cceE
Q 038823           73 YDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETP------IPIL  144 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~------~~~l  144 (338)
                      +.....||+|+||.||+|++  +|+.||||.+.........+...+|+++|++++|+|||++++.-.+..      ...+
T Consensus        15 W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vl   94 (732)
T KOG4250|consen   15 WEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVL   94 (732)
T ss_pred             eeehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceE
Confidence            34567899999999999998  899999999998776777788899999999999999999999876543      5789


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeC--CCC--ceEEecCC
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFN--EEN--VAKLFDFS  220 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~--~~~--~~kl~Dfg  220 (338)
                      |||||.||||...+.+..+.  ..|++...+.++.+++.||.|||   +.+|+||||||.||++-  .+|  ..||+|||
T Consensus        95 vmEyC~gGsL~~~L~~PEN~--~GLpE~e~l~lL~d~~~al~~Lr---En~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG  169 (732)
T KOG4250|consen   95 VMEYCSGGSLRKVLNSPENA--YGLPESEFLDLLSDLVSALRHLR---ENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFG  169 (732)
T ss_pred             EEeecCCCcHHHHhcCcccc--cCCCHHHHHHHHHHHHHHHHHHH---HcCceeccCCCCcEEEeecCCCceEEeeeccc
Confidence            99999999999999875543  37999999999999999999999   99999999999999983  334  47999999


Q ss_pred             CCcccCCCCceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          221 ESISIPEGETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      .|+...++...   ...+||..|++||.+.. ..|+..+|.|||||++|+++||..||.....
T Consensus       170 ~Arel~d~s~~---~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p~~~  229 (732)
T KOG4250|consen  170 AARELDDNSLF---TSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFIPFGG  229 (732)
T ss_pred             ccccCCCCCee---eeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCCcCCC
Confidence            99998877633   77889999999999984 7799999999999999999999999976544

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=100.00  E-value=8.9e-39  Score=287.57  Aligned_cols=202  Identities=22%  Similarity=0.315  Sum_probs=171.1

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCe----EEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QER----LISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~----~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      ++|...+.||+|+||.||+|.+  ++.    .+++|.+...........+.+|+.+++.++|+||+++++++... ..++
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-~~~~   85 (303)
T cd05110           7 TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSP-TIQL   85 (303)
T ss_pred             hhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-Ccee
Confidence            4577889999999999999987  443    47888887654444455788999999999999999999998754 4679


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ++||+++|+|.+++.....    .+++..++.++.|++.||.|||   +.+|+|+||||+||+++.++.+||+|||+++.
T Consensus        86 v~e~~~~g~l~~~~~~~~~----~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~dikp~Nill~~~~~~kL~Dfg~~~~  158 (303)
T cd05110          86 VTQLMPHGCLLDYVHEHKD----NIGSQLLLNWCVQIAKGMMYLE---ERRLVHRDLAARNVLVKSPNHVKITDFGLARL  158 (303)
T ss_pred             eehhcCCCCHHHHHHhccc----CCCHHHHHHHHHHHHHHHHHHh---hcCeeccccccceeeecCCCceEEcccccccc
Confidence            9999999999999876543    5899999999999999999999   89999999999999999999999999999987


Q ss_pred             cCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          225 IPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       225 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      ..............++..|+|||.+.+..++.++||||||+++|||++ |..||...
T Consensus       159 ~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~  215 (303)
T cd05110         159 LEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGI  215 (303)
T ss_pred             ccCcccccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            654332222233445778999999988889999999999999999997 99999753

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=100.00  E-value=1.7e-38  Score=283.84  Aligned_cols=197  Identities=17%  Similarity=0.179  Sum_probs=175.8

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++|+..+.||+|++|.||++.+  +++.+++|.+....  .....+.+.+|++++++++||||+++++++.+++..++||
T Consensus         1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   80 (290)
T cd05580           1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVM   80 (290)
T ss_pred             CceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEE
Confidence            4688889999999999999998  68899999986532  2234567889999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++++|.+++....     .+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.+||+|||++....
T Consensus        81 e~~~~~~L~~~~~~~~-----~l~~~~~~~~~~qil~~l~~lH---~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~  152 (290)
T cd05580          81 EYVPGGELFSHLRKSG-----RFPEPVARFYAAQVVLALEYLH---SLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVK  152 (290)
T ss_pred             ecCCCCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEECCCCCEEEeeCCCccccC
Confidence            9999999999997664     5899999999999999999999   8999999999999999999999999999988765


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ...     ....++..|+|||.+.+...+.++|+||||+++|+|++|+.||...
T Consensus       153 ~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  201 (290)
T cd05580         153 GRT-----YTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDD  201 (290)
T ss_pred             CCC-----CCCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence            441     3446889999999998888899999999999999999999999753

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.5e-39  Score=271.08  Aligned_cols=201  Identities=19%  Similarity=0.230  Sum_probs=177.5

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC---c----hHHHHHHHHHHHHhccC-Ccceeeeeeeee
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS---D----SACKFSINNIVYAAQMD-HKHILKLIGCCL  137 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~---~----~~~~~~~~e~~~l~~l~-h~niv~l~~~~~  137 (338)
                      ..-+.|...+.||.|..++|-++..  +++.+|+|++.....   .    ...+.-..|+.+|+++. ||||+++.+++.
T Consensus        14 ~fy~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~ye   93 (411)
T KOG0599|consen   14 GFYAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYE   93 (411)
T ss_pred             hHHhhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeecc
Confidence            3445688889999999999999988  788999999864321   1    12345578999999996 999999999999


Q ss_pred             cCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEe
Q 038823          138 ETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLF  217 (338)
Q Consensus       138 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~  217 (338)
                      .+...++|+|.|+.|.|+|+|...-     .+++....+|+.|+.+|+.|||   ..+|+||||||+|||+|++.++||+
T Consensus        94 s~sF~FlVFdl~prGELFDyLts~V-----tlSEK~tR~iMrqlfegVeylH---a~~IVHRDLKpENILlddn~~i~is  165 (411)
T KOG0599|consen   94 SDAFVFLVFDLMPRGELFDYLTSKV-----TLSEKETRRIMRQLFEGVEYLH---ARNIVHRDLKPENILLDDNMNIKIS  165 (411)
T ss_pred             CcchhhhhhhhcccchHHHHhhhhe-----eecHHHHHHHHHHHHHHHHHHH---HhhhhhcccChhheeeccccceEEe
Confidence            9999999999999999999998764     6999999999999999999999   9999999999999999999999999


Q ss_pred             cCCCCcccCCCCceeeeecccccCCccccccccc------CCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          218 DFSESISIPEGETHIITRSRFGAWTYSAPEYKRG------GVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       218 Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      |||+|+.+.++...   ....||++|+|||.+.-      ..|+..+|+||.||++|-|+.|.+||-.
T Consensus       166 DFGFa~~l~~GekL---relCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwH  230 (411)
T KOG0599|consen  166 DFGFACQLEPGEKL---RELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWH  230 (411)
T ss_pred             ccceeeccCCchhH---HHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhH
Confidence            99999999887654   67789999999998753      2488899999999999999999999974

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.7e-38  Score=279.27  Aligned_cols=202  Identities=21%  Similarity=0.218  Sum_probs=176.4

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      .++|+..+.||.|+||.||+|..  ++..+++|.+.... ....+.+.+|+.++++++||||+++++++.+.+..+++||
T Consensus         2 ~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e   80 (262)
T cd06613           2 QEDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEP-GDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVME   80 (262)
T ss_pred             ccceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCc-hhhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEe
Confidence            46788899999999999999998  67889999987653 2345788999999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |+++++|.+++.....    .+++..+..++.|++.||.|||   ..+++|+||+|+||++++++.+||+|||.+.....
T Consensus        81 ~~~~~~l~~~~~~~~~----~l~~~~~~~~~~ql~~~l~~lh---~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~  153 (262)
T cd06613          81 YCGGGSLQDIYQVTRG----PLSELQIAYVCRETLKGLAYLH---ETGKIHRDIKGANILLTEDGDVKLADFGVSAQLTA  153 (262)
T ss_pred             CCCCCcHHHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHH---hCCceecCCChhhEEECCCCCEEECccccchhhhh
Confidence            9999999999876532    6899999999999999999999   89999999999999999999999999999876543


Q ss_pred             CCceeeeecccccCCcccccccccC---CCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGG---VFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~---~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ....  .....++..|+|||.+...   .++.++|+||||+++|+|+||++||....
T Consensus       154 ~~~~--~~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~  208 (262)
T cd06613         154 TIAK--RKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLH  208 (262)
T ss_pred             hhhc--cccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCC
Confidence            2211  1344678899999998776   78999999999999999999999997543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>PHA03209 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.4e-38  Score=292.66  Aligned_cols=192  Identities=18%  Similarity=0.231  Sum_probs=166.0

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      ....+|.+.+.||+|+||.||+|..  ++..||+|.....       ....|+.++++++|+||+++++++.+.+..++|
T Consensus        63 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~-------~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  135 (357)
T PHA03209         63 VASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG-------TTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMV  135 (357)
T ss_pred             hhhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc-------ccHHHHHHHHhCCCCCCcChhheEEeCCeeEEE
Confidence            3456899999999999999999999  6678999975433       235689999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      +|++. ++|.+++.....    .+++..+..++.||+.||.|||   ..+|+||||||+|||++.++.+||+|||++...
T Consensus       136 ~e~~~-~~l~~~l~~~~~----~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~  207 (357)
T PHA03209        136 LPHYS-SDLYTYLTKRSR----PLPIDQALIIEKQILEGLRYLH---AQRIIHRDVKTENIFINDVDQVCIGDLGAAQFP  207 (357)
T ss_pred             EEccC-CcHHHHHHhccC----CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEEecCcccccc
Confidence            99997 789888876543    6899999999999999999999   899999999999999999999999999998754


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTR  277 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~  277 (338)
                      ......   ....||..|+|||++.+..++.++|||||||++|||+++..|+
T Consensus       208 ~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~  256 (357)
T PHA03209        208 VVAPAF---LGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTI  256 (357)
T ss_pred             ccCccc---ccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCcc
Confidence            322211   3456899999999999889999999999999999999965554

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=100.00  E-value=7.4e-39  Score=282.61  Aligned_cols=201  Identities=19%  Similarity=0.224  Sum_probs=173.5

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      .++|...+.||+|+||.||+|..  ++..+++|.+... .......+.+|+.+++.++||||+++++++...+..++|||
T Consensus         8 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e   86 (267)
T cd06645           8 QEDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLE-PGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICME   86 (267)
T ss_pred             HHHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecC-chhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEe
Confidence            34677888999999999999998  7889999998755 23334567889999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |+++++|.+++...+     .+++.++..++.|++.||.|||   ..+++|+||||+||+++.++.++|+|||++.....
T Consensus        87 ~~~~~~L~~~~~~~~-----~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~  158 (267)
T cd06645          87 FCGGGSLQDIYHVTG-----PLSESQIAYVSRETLQGLYYLH---SKGKMHRDIKGANILLTDNGHVKLADFGVSAQITA  158 (267)
T ss_pred             ccCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEECcceeeeEccC
Confidence            999999999987654     5899999999999999999999   89999999999999999999999999999876543


Q ss_pred             CCceeeeecccccCCcccccccc---cCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKR---GGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ...  ......|+..|+|||.+.   ...++.++|+|||||++|+|++|..||....
T Consensus       159 ~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~  213 (267)
T cd06645         159 TIA--KRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLH  213 (267)
T ss_pred             ccc--ccccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCccccc
Confidence            221  113456899999999874   4558899999999999999999999986543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=100.00  E-value=5.8e-38  Score=277.31  Aligned_cols=200  Identities=17%  Similarity=0.144  Sum_probs=161.3

Q ss_pred             CccccCCCceEEEEEE-CC---eEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCC
Q 038823           77 KFIKQDSTYKLYKGFW-QE---RLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYT  152 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~-~~---~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~g  152 (338)
                      +.||+|+||.||+|.. ++   ..+++|.+.........+.+.+|+.+++.++||||++++++|.+....++||||+++|
T Consensus         1 ~~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~   80 (268)
T cd05086           1 QEIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELG   80 (268)
T ss_pred             CcCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCC
Confidence            3599999999999986 32   2456676665544455678999999999999999999999999999999999999999


Q ss_pred             CHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCcee
Q 038823          153 TLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHI  232 (338)
Q Consensus       153 sL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~  232 (338)
                      +|.+++...... ...+++..+..++.|++.||.|||   +.+++|+||||+|||++.++.+||+|||++..........
T Consensus        81 ~L~~~l~~~~~~-~~~~~~~~~~~~~~~i~~al~~lH---~~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~~  156 (268)
T cd05086          81 DLKSYLSQEQWH-RRNSQLLLLQRMACEIAAGVTHMH---KHNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIE  156 (268)
T ss_pred             cHHHHHHhhhcc-cccccHHHHHHHHHHHHHHHHHHH---HCCeeccCCccceEEEcCCccEEecccccccccCcchhhh
Confidence            999999764321 124677788899999999999999   8999999999999999999999999999876432221111


Q ss_pred             eeecccccCCccccccccc-------CCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          233 ITRSRFGAWTYSAPEYKRG-------GVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       233 ~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      ......++..|+|||++..       ..++.++||||||+++|||++ |..||...
T Consensus       157 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~  212 (268)
T cd05086         157 TEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHL  212 (268)
T ss_pred             cccCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCC
Confidence            1134557889999998743       235789999999999999997 56788643

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>PHA03211 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=2e-38  Score=298.47  Aligned_cols=195  Identities=16%  Similarity=0.152  Sum_probs=168.5

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      ..+|.+.+.||+|+||.||+|..  .++.|++|....       ..+.+|+++|++++|+||+++++++..++..++|||
T Consensus       168 ~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~-------~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e  240 (461)
T PHA03211        168 GLGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGWY-------ASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLP  240 (461)
T ss_pred             cCCeEEEEEEccCCCeEEEEEEECCCCCEEEEecccc-------cCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEE
Confidence            44688999999999999999999  678899996432       235689999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      ++. ++|.+++.....    .+++..++.++.|++.||.|||   ..+|+||||||+|||++.++.+||+|||+++....
T Consensus       241 ~~~-~~L~~~l~~~~~----~l~~~~~~~i~~qi~~aL~yLH---~~gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~  312 (461)
T PHA03211        241 KYR-SDLYTYLGARLR----PLGLAQVTAVARQLLSAIDYIH---GEGIIHRDIKTENVLVNGPEDICLGDFGAACFARG  312 (461)
T ss_pred             ccC-CCHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHH---HCCEEECcCCHHHEEECCCCCEEEcccCCceeccc
Confidence            996 799988866543    6999999999999999999999   89999999999999999999999999999976543


Q ss_pred             CCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ...........||..|+|||++.+..++.++|||||||++|||++|..|+..
T Consensus       313 ~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~  364 (461)
T PHA03211        313 SWSTPFHYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFS  364 (461)
T ss_pred             ccccccccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCccc
Confidence            3222122345699999999999998999999999999999999998876543

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-38  Score=288.38  Aligned_cols=203  Identities=20%  Similarity=0.213  Sum_probs=181.7

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC--chHHHHHHHHHHHHhccC-CcceeeeeeeeecCCcc
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS--DSACKFSINNIVYAAQMD-HKHILKLIGCCLETPIP  142 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~--~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~  142 (338)
                      .....|.+.+.||.|.||.||++..  +|+.+|+|.+.+...  ......+.+|+.+|+++. |||||.+++.+.+.+..
T Consensus        32 ~~~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~  111 (382)
T KOG0032|consen   32 DIKEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSV  111 (382)
T ss_pred             cccccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeE
Confidence            3455688889999999999999999  699999999987643  234578899999999998 99999999999999999


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC----CceEEec
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE----NVAKLFD  218 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~----~~~kl~D  218 (338)
                      ++|||++.||.|.+.+...      .+++..+..++.|++.|+.|||   +.+|+||||||+|+|+...    +.+|++|
T Consensus       112 ~lvmEL~~GGeLfd~i~~~------~~sE~da~~~~~~il~av~~lH---~~gvvHrDlKpEN~L~~~~~~~~~~ik~~D  182 (382)
T KOG0032|consen  112 YLVMELCEGGELFDRIVKK------HYSERDAAGIIRQILEAVKYLH---SLGVVHRDLKPENLLLASKDEGSGRIKLID  182 (382)
T ss_pred             EEEEEecCCchHHHHHHHc------cCCHHHHHHHHHHHHHHHHHHH---hCCceeccCCHHHeeeccccCCCCcEEEee
Confidence            9999999999999999775      2899999999999999999999   9999999999999999643    4799999


Q ss_pred             CCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          219 FSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       219 fg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ||++.........   ...+||+.|+|||++....|+..+||||+|+++|.|++|.+||.....
T Consensus       183 FGla~~~~~~~~~---~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~  243 (382)
T KOG0032|consen  183 FGLAKFIKPGERL---HTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETE  243 (382)
T ss_pred             CCCceEccCCceE---eeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCCh
Confidence            9999988773222   677899999999999999999999999999999999999999987554

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=100.00  E-value=3.1e-38  Score=283.11  Aligned_cols=198  Identities=17%  Similarity=0.255  Sum_probs=174.6

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      .+|+..+.||.|++|.||+|..  +++.|++|.+.... ....+.+.+|+.+++.++|+||+++++++...+..++|+||
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   97 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQK-QPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVMEY   97 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEeccc-CchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEEe
Confidence            4588889999999999999997  78899999987542 23346788999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      +++++|.+++...      .+++.++..++.+++.||.|||   +.+++|+||+|+||+++.++.+||+|||++......
T Consensus        98 ~~~~~L~~~~~~~------~l~~~~~~~i~~~l~~al~~LH---~~~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~  168 (296)
T cd06655          98 LAGGSLTDVVTET------CMDEAQIAAVCRECLQALEFLH---ANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPE  168 (296)
T ss_pred             cCCCcHHHHHHhc------CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEccCccchhcccc
Confidence            9999999988643      5899999999999999999999   999999999999999999999999999998765443


Q ss_pred             CceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ...  .....++..|+|||.+.+..++.++|||||||++|+|++|+.||...
T Consensus       169 ~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~  218 (296)
T cd06655         169 QSK--RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNE  218 (296)
T ss_pred             ccc--CCCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            221  13446888999999998888999999999999999999999999754

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=7.3e-38  Score=274.79  Aligned_cols=195  Identities=23%  Similarity=0.298  Sum_probs=166.4

Q ss_pred             CccccCCCceEEEEEE--CC---eEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCC
Q 038823           77 KFIKQDSTYKLYKGFW--QE---RLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEY  151 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~--~~---~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~  151 (338)
                      +.||+|+||.||+|.+  .+   ..+++|.+.........+.+.+|+.+++++.|+||+++++++. .+..++||||+++
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e~~~~   79 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCK-GEPLMLVMELAPL   79 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEc-CCceEEEEEeCCC
Confidence            4699999999999987  33   6799999886644445577899999999999999999999876 4568999999999


Q ss_pred             CCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCce
Q 038823          152 TTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH  231 (338)
Q Consensus       152 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~  231 (338)
                      ++|.+++....     .+++..+..++.|++.||.|||   ..+++|+||||+||+++.++.+||+|||.++........
T Consensus        80 ~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lh---~~~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~  151 (257)
T cd05060          80 GPLLKYLKKRR-----EIPVSDLKELAHQVAMGMAYLE---SKHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDY  151 (257)
T ss_pred             CcHHHHHHhCC-----CCCHHHHHHHHHHHHHHHHHHh---hcCeeccCcccceEEEcCCCcEEeccccccceeecCCcc
Confidence            99999997654     5899999999999999999999   899999999999999999999999999998876544322


Q ss_pred             ee-eecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          232 II-TRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       232 ~~-~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      .. .....++..|+|||.+.+..++.++||||||+++|+|++ |..||...
T Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~  202 (257)
T cd05060         152 YRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEM  202 (257)
T ss_pred             cccccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccC
Confidence            11 112224568999999988889999999999999999998 99999754

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=3.2e-38  Score=288.79  Aligned_cols=198  Identities=16%  Similarity=0.210  Sum_probs=169.6

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecC-----
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLET-----  139 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----  139 (338)
                      ...++|...+.||+|+||.||+|..  ++..||+|++.... .......+.+|+.++++++|+||+++++++...     
T Consensus        12 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   91 (343)
T cd07878          12 EVPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIEN   91 (343)
T ss_pred             hhhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccccc
Confidence            3457899999999999999999998  77889999987543 223345678999999999999999999987543     


Q ss_pred             -CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEec
Q 038823          140 -PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFD  218 (338)
Q Consensus       140 -~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~D  218 (338)
                       ...++++|++ +++|.+++...      .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+||+|
T Consensus        92 ~~~~~~~~~~~-~~~l~~~~~~~------~l~~~~~~~i~~qi~~aL~~LH---~~~ivHrdikp~Nil~~~~~~~kl~D  161 (343)
T cd07878          92 FNEVYLVTNLM-GADLNNIVKCQ------KLSDEHVQFLIYQLLRGLKYIH---SAGIIHRDLKPSNVAVNEDCELRILD  161 (343)
T ss_pred             cCcEEEEeecC-CCCHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH---HCCeecccCChhhEEECCCCCEEEcC
Confidence             3468999988 58998887542      5899999999999999999999   89999999999999999999999999


Q ss_pred             CCCCcccCCCCceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          219 FSESISIPEGETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       219 fg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ||++.......     ....||..|+|||.+.+ ..++.++|||||||++|+|++|+.||...
T Consensus       162 fg~~~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  219 (343)
T cd07878         162 FGLARQADDEM-----TGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGN  219 (343)
T ss_pred             CccceecCCCc-----CCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCC
Confidence            99998654332     34468999999999876 46899999999999999999999999753

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=100.00  E-value=4.2e-39  Score=282.61  Aligned_cols=198  Identities=26%  Similarity=0.365  Sum_probs=172.0

Q ss_pred             CCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchH-HHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeec
Q 038823           73 YDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSA-CKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYG  149 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  149 (338)
                      |+..+.||+|+||+||++..  +++.+|+|.+........ .....+|+.++++++|+||+++++++.+.+..++||||+
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~   80 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYC   80 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhcccccccccccccccccccccccccccccc
Confidence            45678899999999999999  677899999987643322 233466999999999999999999999999999999999


Q ss_pred             CCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCC
Q 038823          150 EYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGE  229 (338)
Q Consensus       150 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~  229 (338)
                      ++++|.+++....     .+++..+..++.|++.||.+||   +.+++|+||||+||++++++.++|+|||.+.......
T Consensus        81 ~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~L~~Lh---~~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~  152 (260)
T PF00069_consen   81 PGGSLQDYLQKNK-----PLSEEEILKIAYQILEALAYLH---SKGIVHRDIKPENILLDENGEVKLIDFGSSVKLSENN  152 (260)
T ss_dssp             TTEBHHHHHHHHS-----SBBHHHHHHHHHHHHHHHHHHH---HTTEEESSBSGGGEEESTTSEEEESSGTTTEESTSTT
T ss_pred             ccccccccccccc-----cccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccc
Confidence            9999999998332     6899999999999999999999   8999999999999999999999999999987642211


Q ss_pred             ceeeeecccccCCcccccccc-cCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          230 THIITRSRFGAWTYSAPEYKR-GGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       230 ~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .  ......++..|+|||.+. +..++.++||||+|+++|+|++|..||...
T Consensus       153 ~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~  202 (260)
T PF00069_consen  153 E--NFNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEES  202 (260)
T ss_dssp             S--EBSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTS
T ss_pred             c--ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            1  225567899999999998 778999999999999999999999999865

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=100.00  E-value=4.1e-38  Score=276.03  Aligned_cols=199  Identities=19%  Similarity=0.311  Sum_probs=172.0

Q ss_pred             cCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeec
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYG  149 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  149 (338)
                      .+|++.+.||+|+||.||+|.+ ++..+++|.+.....  ....+.+|++++++++||||+++++++......++||||+
T Consensus         4 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   81 (256)
T cd05112           4 SELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAM--SEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFM   81 (256)
T ss_pred             hHeEEEeeecCcccceEEEEEEeCCCeEEEEECCCCCC--CHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcC
Confidence            4678889999999999999998 578899998875422  2356889999999999999999999999999999999999


Q ss_pred             CCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCC
Q 038823          150 EYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGE  229 (338)
Q Consensus       150 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~  229 (338)
                      ++++|.+++.....    .+++..+..++.+++.||.|||   +.+++|+||||+||+++.++.++|+|||.+.......
T Consensus        82 ~~~~L~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~lH---~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~  154 (256)
T cd05112          82 EHGCLSDYLRAQRG----KFSQETLLGMCLDVCEGMAYLE---SSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQ  154 (256)
T ss_pred             CCCcHHHHHHhCcc----CCCHHHHHHHHHHHHHHHHHHH---HCCccccccccceEEEcCCCeEEECCCcceeecccCc
Confidence            99999999876543    5889999999999999999999   8999999999999999999999999999987654432


Q ss_pred             ceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCC
Q 038823          230 THIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDL  279 (338)
Q Consensus       230 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~  279 (338)
                      ... .....++.+|+|||.+.++.++.++||||||+++|||++ |+.||..
T Consensus       155 ~~~-~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~  204 (256)
T cd05112         155 YTS-STGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYEN  204 (256)
T ss_pred             ccc-cCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCc
Confidence            211 123335678999999988889999999999999999998 9999974

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=100.00  E-value=2.1e-38  Score=282.54  Aligned_cols=213  Identities=16%  Similarity=0.153  Sum_probs=176.9

Q ss_pred             cCHHHHHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeeee
Q 038823           61 FSAKELEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCCL  137 (338)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~  137 (338)
                      +.++.+..+.++|++.+.||+|+||.||++..  ++..+++|.......  ....+.+|+.+++.+ +|+||+++++++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~--~~~~~~~e~~~l~~l~~h~~i~~~~~~~~   85 (286)
T cd06638           8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHD--IDEEIEAEYNILKALSDHPNVVKFYGMYY   85 (286)
T ss_pred             EEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccccc--hHHHHHHHHHHHHHHhcCCCeeeeeeeee
Confidence            45567788999999999999999999999998  778899998764322  225677899999999 6999999999884


Q ss_pred             -----cCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC
Q 038823          138 -----ETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN  212 (338)
Q Consensus       138 -----~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~  212 (338)
                           .++.+++||||+++++|.+++...... ...+++..+..++.|++.||.|||   +.+++||||||+||+++.++
T Consensus        86 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~nili~~~~  161 (286)
T cd06638          86 KKDVKNGDQLWLVLELCNGGSVTDLVKGFLKR-GERMEEPIIAYILHEALMGLQHLH---VNKTIHRDVKGNNILLTTEG  161 (286)
T ss_pred             ecccCCCCeEEEEEeecCCCCHHHHHHHhhcc-CccccHHHHHHHHHHHHHHHHHHH---hCCccccCCCHHhEEECCCC
Confidence                 345689999999999999987643211 126889999999999999999999   89999999999999999999


Q ss_pred             ceEEecCCCCcccCCCCceeeeecccccCCccccccccc-----CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          213 VAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRG-----GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       213 ~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      .+||+|||++.........  .....|+..|+|||++..     ..++.++|||||||++|||++|+.||....
T Consensus       162 ~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~  233 (286)
T cd06638         162 GVKLVDFGVSAQLTSTRLR--RNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLH  233 (286)
T ss_pred             CEEEccCCceeecccCCCc--cccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCc
Confidence            9999999998766443221  134468999999998753     447899999999999999999999997543

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=1.5e-38  Score=283.28  Aligned_cols=200  Identities=21%  Similarity=0.223  Sum_probs=171.6

Q ss_pred             CCCcCCccccCCCceEEEEEE------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecC--Ccce
Q 038823           72 NYDERKFIKQDSTYKLYKGFW------QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLET--PIPI  143 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~  143 (338)
                      .|++.+.||+|+||.||++.+      ++..|++|.+...........+.+|+.++++++|+||+++++++.+.  ...+
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   84 (284)
T cd05079           5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIK   84 (284)
T ss_pred             hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCceE
Confidence            477889999999999999974      56789999987664455567899999999999999999999998765  5689


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      +||||+++++|.+++.....    .+++..++.++.|++.||.|||   +.+++||||||+||+++.++.++|+|||++.
T Consensus        85 lv~e~~~g~~L~~~l~~~~~----~~~~~~~~~i~~~i~~aL~~lH---~~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~  157 (284)
T cd05079          85 LIMEFLPSGSLKEYLPRNKN----KINLKQQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLTK  157 (284)
T ss_pred             EEEEccCCCCHHHHHHhccC----CCCHHHHHHHHHHHHHHHHHHH---HCCeeecccchheEEEcCCCCEEECCCcccc
Confidence            99999999999999876542    5899999999999999999999   9999999999999999999999999999998


Q ss_pred             ccCCCCcee-eeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcC
Q 038823          224 SIPEGETHI-ITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRD  278 (338)
Q Consensus       224 ~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~  278 (338)
                      ......... ......++..|+|||++.+..++.++||||||+++|||+|++.|+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~  213 (284)
T cd05079         158 AIETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSES  213 (284)
T ss_pred             ccccCccceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCc
Confidence            765433221 1123456778999999988889999999999999999999887653

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=100.00  E-value=1.1e-38  Score=280.99  Aligned_cols=242  Identities=17%  Similarity=0.225  Sum_probs=194.5

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      ++|+..+.||.|++|.||++.+  +++.+++|.+...........+.+|++++++++|+||+++++++...+..++|+||
T Consensus         1 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (265)
T cd06605           1 DDLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEY   80 (265)
T ss_pred             CcchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEe
Confidence            3577888999999999999999  68899999988765555567789999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFP-RPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~-~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      +++++|.+++.....    .+++..+..++.|++.||.|||   + .+++|+||+|+||+++.++.++|+|||.+.....
T Consensus        81 ~~~~~L~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~lH---~~~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~  153 (265)
T cd06605          81 MDGGSLDKILKEVQG----RIPERILGKIAVAVLKGLTYLH---EKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVN  153 (265)
T ss_pred             cCCCcHHHHHHHccC----CCCHHHHHHHHHHHHHHHHHHc---CCCCeecCCCCHHHEEECCCCCEEEeecccchhhHH
Confidence            999999999976532    6899999999999999999999   7 9999999999999999999999999999876543


Q ss_pred             CCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHHHHHHHhcCccccccc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIAD  307 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d  307 (338)
                      ...    ....++..|+|||.+.+..++.++||||||+++|+|++|+.||.....  ......+.+........      
T Consensus       154 ~~~----~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~--~~~~~~~~~~~~~~~~~------  221 (265)
T cd06605         154 SLA----KTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPEND--PPDGIFELLQYIVNEPP------  221 (265)
T ss_pred             HHh----hcccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccc--ccccHHHHHHHHhcCCC------
Confidence            222    125688899999999888899999999999999999999999975432  11122222322222111      


Q ss_pred             cccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          308 PIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       308 ~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                      +.+..       .....++.+++.+||..+|
T Consensus       222 ~~~~~-------~~~~~~~~~li~~~l~~~p  245 (265)
T cd06605         222 PRLPS-------GKFSPDFQDFVNLCLIKDP  245 (265)
T ss_pred             CCCCh-------hhcCHHHHHHHHHHcCCCc
Confidence            01110       0123357788889998887

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=100.00  E-value=6e-38  Score=275.18  Aligned_cols=197  Identities=22%  Similarity=0.336  Sum_probs=170.2

Q ss_pred             CccccCCCceEEEEEE-C--C--eEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCC
Q 038823           77 KFIKQDSTYKLYKGFW-Q--E--RLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEY  151 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~-~--~--~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~  151 (338)
                      +.||+|++|.||+|.+ +  +  ..||+|.+.........+.+.+|+.++++++|+||+++++.+.. ...++||||+++
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~~   79 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTELAPL   79 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEecCC
Confidence            3689999999999998 2  2  35899999876443556789999999999999999999999988 889999999999


Q ss_pred             CCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCce
Q 038823          152 TTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH  231 (338)
Q Consensus       152 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~  231 (338)
                      ++|.+++.....   ..+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.+||+|||++.........
T Consensus        80 ~~L~~~l~~~~~---~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~  153 (257)
T cd05040          80 GSLLDRLRKDAL---GHFLISTLCDYAVQIANGMRYLE---SKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDH  153 (257)
T ss_pred             CcHHHHHHhccc---ccCcHHHHHHHHHHHHHHHHHHH---hCCccccccCcccEEEecCCEEEeccccccccccccccc
Confidence            999999977542   26899999999999999999999   899999999999999999999999999999877553322


Q ss_pred             -eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          232 -IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       232 -~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                       .......++..|+|||++.+..++.++||||||+++|||+| |+.||...
T Consensus       154 ~~~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~  204 (257)
T cd05040         154 YVMEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGL  204 (257)
T ss_pred             eecccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCC
Confidence             11123457789999999988889999999999999999999 99999743

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=100.00  E-value=8.5e-38  Score=274.05  Aligned_cols=200  Identities=22%  Similarity=0.270  Sum_probs=176.0

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      +|+..+.||.|+||.||.+..  ++..+++|.+.... +......+.+|+.++++++|+||+++++++.+.+..+++|||
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~   80 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEY   80 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEe
Confidence            478889999999999999888  78889999886542 344557788999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      +++++|.+++.....   ..+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.+||+|||++......
T Consensus        81 ~~~~~L~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~  154 (256)
T cd08221          81 ANGGTLYDKIVRQKG---QLFEEEMVLWYLFQIVSAVSYIH---KAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSE  154 (256)
T ss_pred             cCCCcHHHHHHhccc---cCCCHHHHHHHHHHHHHHHHHHH---hCCccccCCChHhEEEeCCCCEEECcCcceEEcccc
Confidence            999999999976532   26899999999999999999999   899999999999999999999999999998776544


Q ss_pred             CceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ...  .....++..|+|||...+..++.++||||||+++|+|++|..||..
T Consensus       155 ~~~--~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~  203 (256)
T cd08221         155 YSM--AETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDA  203 (256)
T ss_pred             ccc--ccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCC
Confidence            321  1445689999999999888889999999999999999999999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=100.00  E-value=6.1e-38  Score=277.96  Aligned_cols=206  Identities=19%  Similarity=0.247  Sum_probs=173.5

Q ss_pred             cCCCcCCccccCCCceEEEEEE-------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcce
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW-------QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~-------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      ++|+....||.|+||.||+|..       ....+++|.+.........+.+.+|+.++++++|+||+++++++.+.+..+
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   84 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPHY   84 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCcce
Confidence            5788899999999999999996       245688888866533335678999999999999999999999999999999


Q ss_pred             EEEeecCCCCHHHhhhcCCCCC----CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecC
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPH----FEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDF  219 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~----~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Df  219 (338)
                      +||||+++|+|.+++.......    ...+++..+..++.|++.||.|||   +.+|+|+||||+||+++.++.++|+||
T Consensus        85 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH---~~~i~H~dlkp~Nili~~~~~~~l~~~  161 (275)
T cd05046          85 MILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLS---NARFVHRDLAARNCLVSSQREVKVSLL  161 (275)
T ss_pred             EEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhh---hcCcccCcCccceEEEeCCCcEEEccc
Confidence            9999999999999997654110    115899999999999999999999   899999999999999999999999999


Q ss_pred             CCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          220 SESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       220 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      |++......... ......++..|+|||.+.+...+.++||||||+++|+|++ |..||...
T Consensus       162 ~~~~~~~~~~~~-~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~  222 (275)
T cd05046         162 SLSKDVYNSEYY-KLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGL  222 (275)
T ss_pred             ccccccCccccc-ccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCcccc
Confidence            998654332211 1133456778999999988889999999999999999999 88898643

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=4e-38  Score=277.84  Aligned_cols=201  Identities=19%  Similarity=0.250  Sum_probs=172.7

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCc--------hHHHHHHHHHHHHhccCCcceeeeeeeeecCCc
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSD--------SACKFSINNIVYAAQMDHKHILKLIGCCLETPI  141 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~--------~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~  141 (338)
                      +|.+...||+|++|.||+|..  +++.+++|.+......        ...+.+.+|+.++++++||||+++++++.+.+.
T Consensus         1 ~~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   80 (267)
T cd06628           1 KWIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADH   80 (267)
T ss_pred             CccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCc
Confidence            367788999999999999998  6788999988654211        123567899999999999999999999999999


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCC
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSE  221 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~  221 (338)
                      .++||||+++++|.+++....     .+++..+..++.|++.||.|||   +.+++|+||+|+||++++++.++|+|||.
T Consensus        81 ~~lv~e~~~~~~L~~~l~~~~-----~l~~~~~~~~~~~l~~~l~~lH---~~~ivH~di~p~nil~~~~~~~~l~dfg~  152 (267)
T cd06628          81 LNIFLEYVPGGSVAALLNNYG-----AFEETLVRNFVRQILKGLNYLH---NRGIIHRDIKGANILVDNKGGIKISDFGI  152 (267)
T ss_pred             cEEEEEecCCCCHHHHHHhcc-----CccHHHHHHHHHHHHHHHHHHH---hcCcccccCCHHHEEEcCCCCEEecccCC
Confidence            999999999999999997653     5889999999999999999999   89999999999999999999999999999


Q ss_pred             CcccCCCCcee----eeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          222 SISIPEGETHI----ITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       222 a~~~~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      +..........    ......|+..|+|||.+.+..++.++|+||||+++|+|++|+.||...
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  215 (267)
T cd06628         153 SKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDC  215 (267)
T ss_pred             CcccccccccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCc
Confidence            87765322111    012335788999999998888999999999999999999999999754

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=100.00  E-value=5.8e-38  Score=282.50  Aligned_cols=202  Identities=17%  Similarity=0.124  Sum_probs=172.8

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC--chHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS--DSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++|+..+.||+|+||.||++..  .++.|++|.+.....  ......+.+|+.+++.++|+||+++++++..++..++||
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (305)
T cd05609           1 EDFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVM   80 (305)
T ss_pred             CCceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEE
Confidence            4688899999999999999998  678899999875532  233467889999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++++|.+++....     .+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||+++...
T Consensus        81 e~~~g~~L~~~l~~~~-----~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~  152 (305)
T cd05609          81 EYVEGGDCATLLKNIG-----ALPVDMARMYFAETVLALEYLH---NYGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGL  152 (305)
T ss_pred             ecCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCchHHEEECCCCCEEEeeCCCccccC
Confidence            9999999999997653     5899999999999999999999   8999999999999999999999999999886421


Q ss_pred             CCCc-------------eeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          227 EGET-------------HIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       227 ~~~~-------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ....             ........++..|+|||.+.+..++.++|+||||+++|||++|..||...
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~  219 (305)
T cd05609         153 MSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGD  219 (305)
T ss_pred             cCccccccccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            1100             00012235788999999998888999999999999999999999999743

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=100.00  E-value=1.6e-38  Score=284.05  Aligned_cols=201  Identities=19%  Similarity=0.249  Sum_probs=171.1

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      ++|+..+.||+|++|.||+|..  ++..|++|.+...........+.+|+.++++++|+||+++++++.+.+..++||||
T Consensus         5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (291)
T cd07844           5 ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVFEY   84 (291)
T ss_pred             cceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEec
Confidence            5688899999999999999998  68899999987543332334567899999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      ++ ++|.+++.....    .+++..+..++.|++.||.|||   +.+|+|+||||+||+++.++.+||+|||+++.....
T Consensus        85 ~~-~~L~~~~~~~~~----~~~~~~~~~~~~ql~~al~~lH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~  156 (291)
T cd07844          85 LD-TDLKQYMDDCGG----GLSMHNVRLFLFQLLRGLAYCH---QRRVLHRDLKPQNLLISERGELKLADFGLARAKSVP  156 (291)
T ss_pred             CC-CCHHHHHHhCCC----CCCHHHHHHHHHHHHHHHHHHH---hCCeecccCCHHHEEEcCCCCEEECccccccccCCC
Confidence            99 599998876543    6899999999999999999999   899999999999999999999999999998754322


Q ss_pred             CceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ...  .....++..|+|||.+.+ ..++.++||||||+++|+|++|+.||....
T Consensus       157 ~~~--~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~  208 (291)
T cd07844         157 SKT--YSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGST  208 (291)
T ss_pred             Ccc--ccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCc
Confidence            111  122346788999998865 458899999999999999999999997543

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.1e-38  Score=278.75  Aligned_cols=198  Identities=20%  Similarity=0.312  Sum_probs=173.5

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC---CcceeeeeeeeecCCcceEEE
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMD---HKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~---h~niv~l~~~~~~~~~~~lv~  146 (338)
                      .|+..+.||+|+||.||+|.+  ++..+++|.+...........+.+|+.++++++   |+|++++++++.++...++||
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~   81 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIM   81 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEE
Confidence            477788999999999999998  788999999876545555677889999999996   999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++++|.+++...      .+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||.+....
T Consensus        82 e~~~~~~L~~~~~~~------~l~~~~~~~i~~~i~~~l~~lh---~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~  152 (277)
T cd06917          82 EYAEGGSVRTLMKAG------PIAEKYISVIIREVLVALKYIH---KVGVIHRDIKAANILVTNTGNVKLCDFGVAALLN  152 (277)
T ss_pred             ecCCCCcHHHHHHcc------CCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcCHHHEEEcCCCCEEEccCCceeecC
Confidence            999999999998653      5899999999999999999999   8999999999999999999999999999987765


Q ss_pred             CCCceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .....  .....|+..|+|||.+.++ .++.++|+||||+++|+|++|+.||...
T Consensus       153 ~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~  205 (277)
T cd06917         153 QNSSK--RSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDV  205 (277)
T ss_pred             CCccc--cccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCC
Confidence            44321  1344688999999988754 4789999999999999999999999754

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=100.00  E-value=1.7e-38  Score=278.29  Aligned_cols=195  Identities=18%  Similarity=0.288  Sum_probs=168.9

Q ss_pred             cCCCcCCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecC
Q 038823           71 NNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGE  150 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~  150 (338)
                      ++|.+.+.||+|+||.||+|..++..+++|.+....   ..+.+.+|+.++++++|+||+++++++... ..++||||++
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~iK~~~~~~---~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~~v~e~~~   81 (254)
T cd05083           6 QKLTLGEIIGEGEFGAVLQGEYTGQKVAVKNIKCDV---TAQAFLEETAVMTKLHHKNLVRLLGVILHN-GLYIVMELMS   81 (254)
T ss_pred             HHceeeeeeccCCCCceEecccCCCceEEEeecCcc---hHHHHHHHHHHHHhCCCCCcCeEEEEEcCC-CcEEEEECCC
Confidence            458889999999999999999988999999986532   235788999999999999999999998765 4799999999


Q ss_pred             CCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCc
Q 038823          151 YTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGET  230 (338)
Q Consensus       151 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~  230 (338)
                      +++|.+++.....   ..+++..++.++.|++.||.|||   +.+++||||||+||+++.++.+||+|||.+....... 
T Consensus        82 ~~~L~~~l~~~~~---~~~~~~~~~~~~~qi~~al~~lH---~~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~~-  154 (254)
T cd05083          82 KGNLVNFLRTRGR---ALVSVIQLLQFSLDVAEGMEYLE---SKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGV-  154 (254)
T ss_pred             CCCHHHHHHhcCc---CCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccCcceEEEcCCCcEEECCCccceeccccC-
Confidence            9999999976542   25899999999999999999999   8999999999999999999999999999987643321 


Q ss_pred             eeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          231 HIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       231 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                          .....+..|+|||.+.++.++.++|+||||+++|+|++ |+.||...
T Consensus       155 ----~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~  201 (254)
T cd05083         155 ----DNSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKM  201 (254)
T ss_pred             ----CCCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccC
Confidence                22234567999999988889999999999999999998 99999754

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=100.00  E-value=1.6e-38  Score=280.69  Aligned_cols=201  Identities=23%  Similarity=0.302  Sum_probs=168.6

Q ss_pred             CccccCCCceEEEEEEC--------CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           77 KFIKQDSTYKLYKGFWQ--------ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~~--------~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      +.||+|+||.||+|...        +..+++|.+...........+.+|+.+++.++||||+++++++...+..++||||
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMEL   80 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEec
Confidence            46899999999999872        1578999887654444557789999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCC--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC-----ceEEecCCC
Q 038823          149 GEYTTLRDRIFGAPQP--HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN-----VAKLFDFSE  221 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~--~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~-----~~kl~Dfg~  221 (338)
                      +++++|.+++......  ....+++.+++.++.|++.||.|||   +.+++|+||+|+||+++.++     .++|+|||+
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~  157 (269)
T cd05044          81 MEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLE---QMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGL  157 (269)
T ss_pred             cCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHH---hCCcccCCCChheEEEecCCCCCCcceEECCccc
Confidence            9999999999753211  1124789999999999999999999   89999999999999999877     899999999


Q ss_pred             CcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          222 SISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       222 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      +................++..|+|||++.++.++.++||||||+++|||+| |+.||...
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~  217 (269)
T cd05044         158 ARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPAL  217 (269)
T ss_pred             ccccccccccccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCccc
Confidence            876644332222233446788999999999999999999999999999998 99999753

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=8.6e-39  Score=284.36  Aligned_cols=246  Identities=20%  Similarity=0.261  Sum_probs=190.1

Q ss_pred             CCCcCCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhc--cCCcceeeeeeeeecCC----cceEE
Q 038823           72 NYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQ--MDHKHILKLIGCCLETP----IPILV  145 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~l~~~~~~~~----~~~lv  145 (338)
                      ......++|+|.||.||+|.++++.||||++..    ...+.|.+|-++.+.  ++|+||+++++.-..+.    .++||
T Consensus       211 pl~l~eli~~Grfg~V~KaqL~~~~VAVKifp~----~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLV  286 (534)
T KOG3653|consen  211 PLQLLELIGRGRFGCVWKAQLDNRLVAVKIFPE----QEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLV  286 (534)
T ss_pred             chhhHHHhhcCccceeehhhccCceeEEEecCH----HHHHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeEE
Confidence            345567899999999999999999999999964    344678888888776  47999999999876655    79999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC------CCCCeeecCCCCCceeeCCCCceEEecC
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVG------FPRPIVFGNLISLCILFNEENVAKLFDF  219 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~------~~~~iiH~dik~~Nill~~~~~~kl~Df  219 (338)
                      +||.+.|||.++|..+      .++|....+++..+++||+|||+.      .+.+|+|||||+.|||+.+|+++.|+||
T Consensus       287 t~fh~kGsL~dyL~~n------tisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDF  360 (534)
T KOG3653|consen  287 TEFHPKGSLCDYLKAN------TISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADF  360 (534)
T ss_pred             eeeccCCcHHHHHHhc------cccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeecc
Confidence            9999999999999876      699999999999999999999976      4578999999999999999999999999


Q ss_pred             CCCcccCCCCceeeeecccccCCcccccccccCC------CCccchHHHHHHHHHHHHhCCC------------CcCC-c
Q 038823          220 SESISIPEGETHIITRSRFGAWTYSAPEYKRGGV------FNEKLDVYTFSTVLLELLTGQS------------TRDL-L  280 (338)
Q Consensus       220 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~------~~~~~Dv~s~Gv~l~el~tG~~------------p~~~-~  280 (338)
                      |+|...........+...+||.+|||||++.+..      .-.+.||||+|.+||||++.-.            ||.. .
T Consensus       361 GLAl~~~p~~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~ev  440 (534)
T KOG3653|consen  361 GLALRLEPGKPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEV  440 (534)
T ss_pred             ceeEEecCCCCCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHh
Confidence            9999887665555556689999999999986543      2246899999999999998532            2221 0


Q ss_pred             cCCcccccHHHHHHHHHhcCccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          281 RTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       281 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                      .....    .+.++...-..+.+..+...+...       .-+..+.+++.-||..||
T Consensus       441 G~hPt----~e~mq~~VV~kK~RP~~p~~W~~h-------~~~~~l~et~EeCWDhDa  487 (534)
T KOG3653|consen  441 GNHPT----LEEMQELVVRKKQRPKIPDAWRKH-------AGMAVLCETIEECWDHDA  487 (534)
T ss_pred             cCCCC----HHHHHHHHHhhccCCCChhhhhcC-------ccHHHHHHHHHHHcCCch
Confidence            11111    222333333333334443333332       245567788888988876

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=100.00  E-value=3e-38  Score=279.29  Aligned_cols=203  Identities=22%  Similarity=0.256  Sum_probs=172.7

Q ss_pred             hcCCCcCCccccCCCceEEEEEE-C----CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW-Q----ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~-~----~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      .++|++.+.||+|+||.||+|.+ +    ...|++|...........+.+.+|+.++++++|+||+++++++.+ +..++
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~~l   83 (270)
T cd05056           5 REDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITE-NPVWI   83 (270)
T ss_pred             hhhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcC-CCcEE
Confidence            35688889999999999999997 2    246899988766545556789999999999999999999999875 45789


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ||||+++|+|.+++.....    .+++..+..++.+++.||.|||   +.+++|+||||+||+++.++.+||+|||++..
T Consensus        84 v~e~~~~~~L~~~l~~~~~----~~~~~~~~~~~~~l~~~l~~lH---~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~  156 (270)
T cd05056          84 VMELAPLGELRSYLQVNKY----SLDLASLILYSYQLSTALAYLE---SKRFVHRDIAARNVLVSSPDCVKLGDFGLSRY  156 (270)
T ss_pred             EEEcCCCCcHHHHHHhCCC----CCCHHHHHHHHHHHHHHHHHHH---hCCeeccccChheEEEecCCCeEEccCceeee
Confidence            9999999999999976542    5899999999999999999999   89999999999999999999999999999877


Q ss_pred             cCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          225 IPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       225 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      ......... ....++..|+|||.+....++.++||||||+++|||++ |+.||....
T Consensus       157 ~~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~  213 (270)
T cd05056         157 LEDESYYKA-SKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVK  213 (270)
T ss_pred             cccccceec-CCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCC
Confidence            654432221 23334568999999988889999999999999999996 999997543

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=100.00  E-value=2.2e-38  Score=282.18  Aligned_cols=202  Identities=21%  Similarity=0.248  Sum_probs=173.0

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC-chHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS-DSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      ++|+....||+|++|.||+|.+  +++.|++|.+..... ....+.+.+|+.++++++|+||+++++++...+..++|||
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e   80 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFE   80 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEe
Confidence            4688889999999999999998  688999998865432 2233567899999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |+++++|..++....     .+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.++|+|||++.....
T Consensus        81 ~~~~~~l~~~~~~~~-----~~~~~~~~~~~~ql~~~l~~LH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~  152 (286)
T cd07847          81 YCDHTVLNELEKNPR-----GVPEHLIKKIIWQTLQAVNFCH---KHNCIHRDVKPENILITKQGQIKLCDFGFARILTG  152 (286)
T ss_pred             ccCccHHHHHHhCCC-----CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCChhhEEEcCCCcEEECccccceecCC
Confidence            999888887765443     5899999999999999999999   89999999999999999999999999999987654


Q ss_pred             CCceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ....  .....++..|+|||.+.+ ..++.++||||||+++|+|++|++||.....
T Consensus       153 ~~~~--~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~  206 (286)
T cd07847         153 PGDD--YTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSD  206 (286)
T ss_pred             Cccc--ccCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCCh
Confidence            3321  133457889999999876 4578999999999999999999999975443

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=100.00  E-value=6.8e-38  Score=284.81  Aligned_cols=201  Identities=14%  Similarity=0.170  Sum_probs=167.0

Q ss_pred             cCCccccC--CCceEEEEEE--CCeEEEEEEeCcCCC-chHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeec
Q 038823           75 ERKFIKQD--STYKLYKGFW--QERLISVMKYNESYS-DSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYG  149 (338)
Q Consensus        75 ~~~~lg~G--~~g~Vy~~~~--~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  149 (338)
                      +.++||+|  +|++||++..  ++..||+|.+..... ....+.+.+|+.+++.++||||+++++++..++..++||||+
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~   81 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFM   81 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEecc
Confidence            35789999  6789999998  789999999976533 333456778999999999999999999999999999999999


Q ss_pred             CCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCC
Q 038823          150 EYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGE  229 (338)
Q Consensus       150 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~  229 (338)
                      ++|+|.+++.....   ..+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.++++||+.+.......
T Consensus        82 ~~~~l~~~~~~~~~---~~l~~~~~~~i~~qi~~~L~~LH---~~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~  155 (327)
T cd08227          82 AYGSAKDLICTHFM---DGMSELAIAYILQGVLKALDYIH---HMGYVHRSVKASHILISVDGKVYLSGLRSNLSMINHG  155 (327)
T ss_pred             CCCcHHHHHHhhcc---CCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCChhhEEEecCCcEEEcccchhhcccccc
Confidence            99999999975432   25899999999999999999999   8999999999999999999999999998654332211


Q ss_pred             ce-----eeeecccccCCccccccccc--CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          230 TH-----IITRSRFGAWTYSAPEYKRG--GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       230 ~~-----~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ..     .......++..|+|||++.+  ..++.++|||||||++|||++|+.||....
T Consensus       156 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~  214 (327)
T cd08227         156 QRLRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMP  214 (327)
T ss_pred             ccccccccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCcc
Confidence            10     01122346778999999876  358999999999999999999999997543

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=4.3e-38  Score=277.24  Aligned_cols=189  Identities=24%  Similarity=0.332  Sum_probs=159.6

Q ss_pred             CccccCCCceEEEEEEC--------------CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcc
Q 038823           77 KFIKQDSTYKLYKGFWQ--------------ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIP  142 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~~--------------~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~  142 (338)
                      +.||+|+||.||+|+..              ...|++|.+... .......+.+|+.+++.++||||+++++++......
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~-~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~   79 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPS-HRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVEN   79 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChh-hhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCC
Confidence            36899999999999861              225888887654 233345788899999999999999999999999999


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCc-------eE
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENV-------AK  215 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~-------~k  215 (338)
                      ++||||+++|+|..++.....    .+++..+++++.||+.||.|||   +.+|+||||||+|||++.++.       ++
T Consensus        80 ~lv~e~~~~~~l~~~~~~~~~----~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~Nill~~~~~~~~~~~~~~  152 (262)
T cd05077          80 IMVEEFVEFGPLDLFMHRKSD----VLTTPWKFKVAKQLASALSYLE---DKDLVHGNVCTKNILLAREGIDGECGPFIK  152 (262)
T ss_pred             EEEEecccCCCHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHhh---hCCeECCCCCcccEEEecCCccCCCCceeE
Confidence            999999999999988876443    6899999999999999999999   999999999999999987664       89


Q ss_pred             EecCCCCcccCCCCceeeeecccccCCcccccccc-cCCCCccchHHHHHHHHHHHH-hCCCCcCC
Q 038823          216 LFDFSESISIPEGETHIITRSRFGAWTYSAPEYKR-GGVFNEKLDVYTFSTVLLELL-TGQSTRDL  279 (338)
Q Consensus       216 l~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~Dv~s~Gv~l~el~-tG~~p~~~  279 (338)
                      ++|||++......      ....++..|+|||.+. ...++.++|||||||++|||+ +|+.||..
T Consensus       153 l~d~g~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~  212 (262)
T cd05077         153 LSDPGIPITVLSR------QECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKD  212 (262)
T ss_pred             eCCCCCCccccCc------ccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCC
Confidence            9999988655332      3345788999999886 456899999999999999998 58888864

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=7.8e-38  Score=276.82  Aligned_cols=200  Identities=17%  Similarity=0.222  Sum_probs=170.7

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC---------chHHHHHHHHHHHHhccCCcceeeeeeeeecCC
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS---------DSACKFSINNIVYAAQMDHKHILKLIGCCLETP  140 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~---------~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~  140 (338)
                      +|...+.||+|+||.||+|..  +++.+|+|.+.....         ....+.+.+|+.++++++|+|++++++++...+
T Consensus         2 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   81 (272)
T cd06629           2 KWVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEE   81 (272)
T ss_pred             ceeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCC
Confidence            366788999999999999987  788999998753211         112346788999999999999999999999999


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                      ..++||||+++++|.+++.+..     .+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||
T Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~-----~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~~~nil~~~~~~~~l~d~~  153 (272)
T cd06629          82 YLSIFLEYVPGGSIGSCLRTYG-----RFEEQLVRFFTEQVLEGLAYLH---SKGILHRDLKADNLLVDADGICKISDFG  153 (272)
T ss_pred             ceEEEEecCCCCcHHHHHhhcc-----CCCHHHHHHHHHHHHHHHHHHh---hCCeeecCCChhhEEEcCCCeEEEeecc
Confidence            9999999999999999997763     6899999999999999999999   8999999999999999999999999999


Q ss_pred             CCcccCCCCceeeeecccccCCcccccccccCC--CCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          221 ESISIPEGETHIITRSRFGAWTYSAPEYKRGGV--FNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ++................++..|+|||.+....  ++.++|+||||+++|+|++|..||..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~  214 (272)
T cd06629         154 ISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSD  214 (272)
T ss_pred             ccccccccccccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcC
Confidence            987654322221123445888999999987654  88999999999999999999999964

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=100.00  E-value=6.3e-38  Score=278.91  Aligned_cols=201  Identities=18%  Similarity=0.198  Sum_probs=167.6

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHH-HhccCCcceeeeeeeeecCCcceEEEe
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVY-AAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~-l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      ++|++.+.||+|+||.||+|.+  ++..||+|.+...........+..|+.. ++.++|+||+++++++...+..++|||
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e   80 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICME   80 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhh
Confidence            4688899999999999999999  6899999998765443334556666665 566789999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPR-PIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~-~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      |++ |+|.+++....... ..+++..++.++.|++.||.|||   +. +++||||||+||+++.++.+||+|||++....
T Consensus        81 ~~~-~~l~~~l~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH---~~~~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~  155 (283)
T cd06617          81 VMD-TSLDKFYKKVYDKG-LTIPEDILGKIAVSIVKALEYLH---SKLSVIHRDVKPSNVLINRNGQVKLCDFGISGYLV  155 (283)
T ss_pred             hhc-ccHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHh---hcCCeecCCCCHHHEEECCCCCEEEeecccccccc
Confidence            998 78888876532211 36899999999999999999999   76 99999999999999999999999999987654


Q ss_pred             CCCceeeeecccccCCccccccccc----CCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRG----GVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~----~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      .....   ....++..|+|||.+.+    ..++.++|+||||+++|+|++|+.||..
T Consensus       156 ~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~  209 (283)
T cd06617         156 DSVAK---TIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDS  209 (283)
T ss_pred             ccccc---ccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCc
Confidence            32211   33468889999998864    3468899999999999999999999964

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=100.00  E-value=5.7e-38  Score=279.45  Aligned_cols=201  Identities=17%  Similarity=0.239  Sum_probs=170.5

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC-chHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS-DSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      +|+..+.||+|++|.||+|..  ++..|++|.+..... ......+.+|+.++++++|+||+++++++.+++..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEF   80 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEec
Confidence            477889999999999999998  788999999865432 22346678999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      ++ ++|.+++......  ..+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.+||+|||++......
T Consensus        81 ~~-~~l~~~~~~~~~~--~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~  154 (285)
T cd07861          81 LS-MDLKKYLDSLPKG--QYMDAELVKSYLYQILQGILFCH---SRRVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIP  154 (285)
T ss_pred             CC-CCHHHHHhcCCCC--CcCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCCHHHEEEcCCCcEEECcccceeecCCC
Confidence            98 6898888654321  26899999999999999999999   899999999999999999999999999998765433


Q ss_pred             CceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ...  .....++..|+|||.+.+. .++.++||||||+++|+|+||++||...
T Consensus       155 ~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~  205 (285)
T cd07861         155 VRV--YTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGD  205 (285)
T ss_pred             ccc--ccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence            211  1334578899999988654 4789999999999999999999999753

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=1.9e-38  Score=313.58  Aligned_cols=210  Identities=18%  Similarity=0.212  Sum_probs=172.2

Q ss_pred             HHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeec--CCc
Q 038823           67 EIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLE--TPI  141 (338)
Q Consensus        67 ~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~  141 (338)
                      ....++|.+.+.||+|+||+||+|..  .+..+|+|.+.... .......+..|+.++++++||||+++++++.+  ...
T Consensus         9 e~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~   88 (1021)
T PTZ00266          9 ESRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQK   88 (1021)
T ss_pred             ccccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCE
Confidence            44556899999999999999999999  77889999887542 34445778999999999999999999998854  356


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC----CCCeeecCCCCCceeeCC-------
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGF----PRPIVFGNLISLCILFNE-------  210 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~----~~~iiH~dik~~Nill~~-------  210 (338)
                      +|+||||+++|+|.++|...... ...+++..++.|+.||+.||.|||...    ..+|+||||||+|||++.       
T Consensus        89 lyIVMEY~~gGSL~~lL~k~~~~-~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~  167 (1021)
T PTZ00266         89 LYILMEFCDAGDLSRNIQKCYKM-FGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGK  167 (1021)
T ss_pred             EEEEEeCCCCCcHHHHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCcccccc
Confidence            89999999999999998753211 126999999999999999999999421    146999999999999964       


Q ss_pred             ----------CCceEEecCCCCcccCCCCceeeeecccccCCccccccccc--CCCCccchHHHHHHHHHHHHhCCCCcC
Q 038823          211 ----------ENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRG--GVFNEKLDVYTFSTVLLELLTGQSTRD  278 (338)
Q Consensus       211 ----------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~Gv~l~el~tG~~p~~  278 (338)
                                .+.+||+|||++.........   ....||+.|+|||++..  ..++.++|||||||++|||+||+.||.
T Consensus       168 i~~~~~n~ng~~iVKLsDFGlAr~l~~~s~~---~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~  244 (1021)
T PTZ00266        168 ITAQANNLNGRPIAKIGDFGLSKNIGIESMA---HSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFH  244 (1021)
T ss_pred             ccccccccCCCCceEEccCCccccccccccc---cccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCC
Confidence                      235899999999876433221   34568999999999854  458899999999999999999999997


Q ss_pred             Cc
Q 038823          279 LL  280 (338)
Q Consensus       279 ~~  280 (338)
                      ..
T Consensus       245 ~~  246 (1021)
T PTZ00266        245 KA  246 (1021)
T ss_pred             cC
Confidence            53

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=100.00  E-value=1.4e-37  Score=276.19  Aligned_cols=198  Identities=18%  Similarity=0.266  Sum_probs=173.7

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeec
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYG  149 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  149 (338)
                      -|+..+.||.|+||.||+|.+  ++..+|+|.+...........+.+|+.++++++|+||+++++++..++..++||||+
T Consensus         5 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   84 (277)
T cd06641           5 LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYL   84 (277)
T ss_pred             hhhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEeC
Confidence            377788999999999999988  678999999875544445577889999999999999999999999999999999999


Q ss_pred             CCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCC
Q 038823          150 EYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGE  229 (338)
Q Consensus       150 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~  229 (338)
                      ++++|.+++...      .+++..+..++.+++.|+.|||   ..+++|+||+|+||+++.++.++|+|||++.......
T Consensus        85 ~~~~l~~~i~~~------~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~  155 (277)
T cd06641          85 GGGSALDLLEPG------PLDETQIATILREILKGLDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQ  155 (277)
T ss_pred             CCCcHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHc---cCCeecCCCCHHhEEECCCCCEEEeecccceecccch
Confidence            999999998643      5889999999999999999999   8999999999999999999999999999987654322


Q ss_pred             ceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          230 THIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       230 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ..  .....++..|+|||.+.+..++.++|+|||||++|+|++|..||...
T Consensus       156 ~~--~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~  204 (277)
T cd06641         156 IK--RNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSEL  204 (277)
T ss_pred             hh--hccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCcc
Confidence            11  13345788999999998888999999999999999999999999753

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=100.00  E-value=6.3e-38  Score=280.27  Aligned_cols=213  Identities=18%  Similarity=0.171  Sum_probs=177.3

Q ss_pred             ccCHHHHHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeee
Q 038823           60 IFSAKELEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCC  136 (338)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~  136 (338)
                      .+...++..++++|++.+.||+|+||.||++..  ++..+++|.+....  .....+.+|+.++.++ +|+|++++++++
T Consensus        11 ~~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~--~~~~~~~~e~~~l~~l~~h~ni~~~~~~~   88 (291)
T cd06639          11 MLGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPIS--DVDEEIEAEYNILQSLPNHPNVVKFYGMF   88 (291)
T ss_pred             hhhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccc--cHHHHHHHHHHHHHHhcCCCCeEEEEEEE
Confidence            355677888899999999999999999999998  67889999986542  2235677899999998 799999999998


Q ss_pred             ecC-----CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC
Q 038823          137 LET-----PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE  211 (338)
Q Consensus       137 ~~~-----~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~  211 (338)
                      ...     +..++||||+++++|.+++...... ...+++..+..++.|++.||.|||   +.+++|+||||+||+++.+
T Consensus        89 ~~~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~-~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dlkp~nili~~~  164 (291)
T cd06639          89 YKADKLVGGQLWLVLELCNGGSVTELVKGLLIC-GQRLDEAMISYILYGALLGLQHLH---NNRIIHRDVKGNNILLTTE  164 (291)
T ss_pred             EeccccCCCeeEEEEEECCCCcHHHHHHHhhhc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEEcCC
Confidence            753     3589999999999999988642111 126899999999999999999999   8999999999999999999


Q ss_pred             CceEEecCCCCcccCCCCceeeeecccccCCcccccccccCC-----CCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          212 NVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGV-----FNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       212 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      +.+||+|||++.........  .....|+..|+|||.+....     ++.++|||||||++|||++|+.||...
T Consensus       165 ~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~  236 (291)
T cd06639         165 GGVKLVDFGVSAQLTSTRLR--RNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDM  236 (291)
T ss_pred             CCEEEeecccchhccccccc--ccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCC
Confidence            99999999998765433221  13346888999999876432     689999999999999999999999754

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=9.6e-38  Score=276.87  Aligned_cols=190  Identities=23%  Similarity=0.297  Sum_probs=158.8

Q ss_pred             ccccCCCceEEEEEE--C------------------------CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceee
Q 038823           78 FIKQDSTYKLYKGFW--Q------------------------ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILK  131 (338)
Q Consensus        78 ~lg~G~~g~Vy~~~~--~------------------------~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~  131 (338)
                      +||+|+||.||+|.+  +                        ...|++|.+... .......+.+|+.+++.++||||++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~-~~~~~~~~~~~~~~~~~l~h~niv~   80 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPS-HRDIALAFFETASLMSQVSHIHLAF   80 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChH-HHHHHHHHHHHHHHHhcCCCCCeee
Confidence            699999999999985  1                        134788887654 2333467888999999999999999


Q ss_pred             eeeeeecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC
Q 038823          132 LIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE  211 (338)
Q Consensus       132 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~  211 (338)
                      ++++|.+.+..++||||+++|+|..++.....    .+++..+..++.|++.||.|||   +.+|+||||||+||+++.+
T Consensus        81 ~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~----~~~~~~~~~i~~qi~~~l~~lH---~~~iiH~dlkp~Nill~~~  153 (274)
T cd05076          81 VHGVCVRGSENIMVEEFVEHGPLDVCLRKEKG----RVPVAWKITVAQQLASALSYLE---DKNLVHGNVCAKNILLARL  153 (274)
T ss_pred             EEEEEEeCCceEEEEecCCCCcHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHH---cCCccCCCCCcccEEEecc
Confidence            99999999999999999999999999876432    6899999999999999999999   8999999999999999764


Q ss_pred             C-------ceEEecCCCCcccCCCCceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHH-hCCCCcCCcc
Q 038823          212 N-------VAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELL-TGQSTRDLLR  281 (338)
Q Consensus       212 ~-------~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~-tG~~p~~~~~  281 (338)
                      +       .+|++|||.+......      ....++..|+|||.+.+ ..++.++||||||+++|||+ +|+.||....
T Consensus       154 ~~~~~~~~~~kl~d~g~~~~~~~~------~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~  226 (274)
T cd05076         154 GLAEGTSPFIKLSDPGVSFTALSR------EERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERT  226 (274)
T ss_pred             CcccCccceeeecCCccccccccc------cccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccC
Confidence            4       3899999987654322      23357788999998865 45899999999999999985 6999997543

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=2.6e-38  Score=281.33  Aligned_cols=202  Identities=22%  Similarity=0.269  Sum_probs=173.3

Q ss_pred             cCCCcCCccccCCCceEEEEEE------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeec--CCcc
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW------QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLE--TPIP  142 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~  142 (338)
                      ..|...+.||+|+||.||+|.+      ++..+|+|.+.........+.+.+|+++++.++|+||+++++++..  ....
T Consensus         4 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~   83 (284)
T cd05038           4 RHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSL   83 (284)
T ss_pred             hhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCce
Confidence            3567778999999999999986      2678999999866443345789999999999999999999999877  5578


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSES  222 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a  222 (338)
                      ++||||+++++|.+++.....    .+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.++|+|||.+
T Consensus        84 ~lv~e~~~~~~l~~~l~~~~~----~~~~~~~~~~~~~l~~aL~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~  156 (284)
T cd05038          84 RLIMEYLPSGSLRDYLQRHRD----QINLKRLLLFSSQICKGMDYLG---SQRYIHRDLAARNILVESEDLVKISDFGLA  156 (284)
T ss_pred             EEEEecCCCCCHHHHHHhCcc----ccCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHhEEEcCCCCEEEcccccc
Confidence            999999999999999976543    5899999999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCCce-eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          223 ISIPEGETH-IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       223 ~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ......... .......++..|+|||...+..++.++||||||+++|||+||+.|+..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~  214 (284)
T cd05038         157 KVLPEDKDYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQS  214 (284)
T ss_pred             cccccCCcceeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCccc
Confidence            877643222 111233456679999999888899999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=100.00  E-value=7.8e-38  Score=278.35  Aligned_cols=209  Identities=16%  Similarity=0.224  Sum_probs=175.4

Q ss_pred             CHHHHHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeeeec
Q 038823           62 SAKELEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCCLE  138 (338)
Q Consensus        62 ~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~  138 (338)
                      +..++..+.+.|++.+.||+|+||.||+|.+  +++.+++|.+...  ......+..|+.++.++ +|+||+++++++..
T Consensus         7 ~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~--~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   84 (282)
T cd06636           7 DLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVT--EDEEEEIKLEINMLKKYSHHRNIATYYGAFIK   84 (282)
T ss_pred             hhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecC--hHHHHHHHHHHHHHHHhcCCCcEEEEeeehhc
Confidence            4556667788999999999999999999999  7788999988653  22335678899999998 69999999999863


Q ss_pred             ------CCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC
Q 038823          139 ------TPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN  212 (338)
Q Consensus       139 ------~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~  212 (338)
                            .+..+++|||+++|+|.+++.....   ..+++..+..++.|++.||.|||   +.+++|+||+|+||++++++
T Consensus        85 ~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~---~~~~~~~~~~~~~qi~~al~~LH---~~~ivH~dl~~~nili~~~~  158 (282)
T cd06636          85 KSPPGHDDQLWLVMEFCGAGSVTDLVKNTKG---NALKEDWIAYICREILRGLAHLH---AHKVIHRDIKGQNVLLTENA  158 (282)
T ss_pred             ccccCCCCEEEEEEEeCCCCcHHHHHHHccC---CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCC
Confidence                  4568999999999999999976432   25889999999999999999999   89999999999999999999


Q ss_pred             ceEEecCCCCcccCCCCceeeeecccccCCcccccccc-----cCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          213 VAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKR-----GGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       213 ~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .++|+|||++.........  .....|+..|+|||.+.     ...++.++|+|||||++|||++|+.||...
T Consensus       159 ~~~l~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~  229 (282)
T cd06636         159 EVKLVDFGVSAQLDRTVGR--RNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDM  229 (282)
T ss_pred             CEEEeeCcchhhhhccccC--CCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCcccc
Confidence            9999999998765432111  13456889999999875     345888999999999999999999999754

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=100.00  E-value=1.7e-38  Score=282.94  Aligned_cols=200  Identities=21%  Similarity=0.270  Sum_probs=171.8

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCc-hHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSD-SACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      ++|+..+.||+|+||.||+|.+  +++.+|+|.+...... ...+.+.+|+++++.++|+||+++++++.+++..++|||
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (286)
T cd07846           1 EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFE   80 (286)
T ss_pred             CceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEe
Confidence            4688889999999999999999  5789999998754322 234668899999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |+++++|.++.....     .+++..+..++.|++.||.|||   +.+++|+||+|+||++++++.++|+|||++.....
T Consensus        81 ~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~i~~~l~~LH---~~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~  152 (286)
T cd07846          81 FVDHTVLDDLEKYPN-----GLDESRVRKYLFQILRGIEFCH---SHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAA  152 (286)
T ss_pred             cCCccHHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEECCCCcEEEEeeeeeeeccC
Confidence            999988888765543     5899999999999999999999   89999999999999999999999999999876544


Q ss_pred             CCceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ....  .....++..|+|||++.+. .++.++||||||+++|||++|++||...
T Consensus       153 ~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~  204 (286)
T cd07846         153 PGEV--YTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGD  204 (286)
T ss_pred             Cccc--cCcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCC
Confidence            3221  1334578899999998753 4788999999999999999999999754

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=100.00  E-value=7.8e-38  Score=275.66  Aligned_cols=207  Identities=18%  Similarity=0.241  Sum_probs=178.5

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      ++|++.+.||.|+||+||+|..  ++..+++|.+.........+.+.+|+..++.++|+||+++++.+..++..++|+|+
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~   80 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPY   80 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEec
Confidence            4688999999999999999998  77889999987654444667899999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      +++++|.+++......  ..+++..+..++.|++.||.|||   +.+++|+||+|+||++++++.++|+|||++......
T Consensus        81 ~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~ql~~al~~lh---~~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~  155 (267)
T cd06610          81 LSGGSLLDIMKSSYPR--GGLDEAIIATVLKEVLKGLEYLH---SNGQIHRDIKAGNILLGEDGSVKIADFGVSASLADG  155 (267)
T ss_pred             cCCCcHHHHHHHhccc--CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHhEEEcCCCCEEEcccchHHHhccC
Confidence            9999999999764211  25899999999999999999999   999999999999999999999999999998766544


Q ss_pred             Ccee--eeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          229 ETHI--ITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       229 ~~~~--~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ....  ......|+..|+|||++... .++.++|+||||+++|+|++|+.||.....
T Consensus       156 ~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~  212 (267)
T cd06610         156 GDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPP  212 (267)
T ss_pred             ccccccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccCh
Confidence            3221  11334588999999998777 689999999999999999999999975433

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=100.00  E-value=7.1e-39  Score=296.16  Aligned_cols=204  Identities=19%  Similarity=0.230  Sum_probs=176.8

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-C-----cceeeeeeeeecCCcce
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMD-H-----KHILKLIGCCLETPIPI  143 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h-----~niv~l~~~~~~~~~~~  143 (338)
                      .|.+.+.||+|+||.|-+|.+  +++.||||++++.  .....+...|+.+|..|+ |     -|+|++++||...++.+
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~--k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~Hlc  264 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNK--KRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLC  264 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccC--hHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeecccccccee
Confidence            567788999999999999999  7999999999875  233456778999999997 4     37999999999999999


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC--CceEEecCCC
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE--NVAKLFDFSE  221 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~--~~~kl~Dfg~  221 (338)
                      ||+|.+. .+|.++|+.+.-   .+++...+..++.||+.||.+||   +.+|||+||||+||||.+-  ..+||+|||.
T Consensus       265 iVfELL~-~NLYellK~n~f---~Glsl~~ir~~~~Qil~~L~~L~---~l~IIHcDLKPENILL~~~~r~~vKVIDFGS  337 (586)
T KOG0667|consen  265 IVFELLS-TNLYELLKNNKF---RGLSLPLVRKFAQQILTALLFLH---ELGIIHCDLKPENILLKDPKRSRIKVIDFGS  337 (586)
T ss_pred             eeehhhh-hhHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCChhheeeccCCcCceeEEeccc
Confidence            9999998 899999988754   57999999999999999999999   9999999999999999754  3699999999


Q ss_pred             CcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccCCcccccH
Q 038823          222 SISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHL  289 (338)
Q Consensus       222 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l  289 (338)
                      |+.......     ....+..|.|||++.+.+|+.+.||||||||+.||++|.+-|+..+..++...+
T Consensus       338 Sc~~~q~vy-----tYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~ne~DQl~~I  400 (586)
T KOG0667|consen  338 SCFESQRVY-----TYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGDNEYDQLARI  400 (586)
T ss_pred             ccccCCcce-----eeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccCCCCHHHHHHHH
Confidence            988665432     344677899999999999999999999999999999999989876654443333

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=100.00  E-value=1.4e-37  Score=280.27  Aligned_cols=196  Identities=22%  Similarity=0.291  Sum_probs=170.0

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ..|+..+.||+|+||.||+|..  +++.|++|.+....  .....+.+.+|+.+++.++||||+++++++.+.+..++||
T Consensus        15 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv~   94 (307)
T cd06607          15 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVM   94 (307)
T ss_pred             hhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEEH
Confidence            4588889999999999999998  78899999986432  2334567889999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||++ |+|.+++.....    .+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||++....
T Consensus        95 e~~~-g~l~~~~~~~~~----~l~~~~~~~~~~ql~~~L~~LH---~~~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~  166 (307)
T cd06607          95 EYCL-GSASDILEVHKK----PLQEVEIAAICHGALQGLAYLH---SHERIHRDIKAGNILLTEPGTVKLADFGSASLVS  166 (307)
T ss_pred             HhhC-CCHHHHHHHccc----CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCcccEEECCCCCEEEeecCcceecC
Confidence            9998 688887765443    6899999999999999999999   8999999999999999999999999999987654


Q ss_pred             CCCceeeeecccccCCcccccccc---cCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKR---GGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ..      ....++..|+|||.+.   ...++.++||||||+++|||+||+.||...
T Consensus       167 ~~------~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~  217 (307)
T cd06607         167 PA------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM  217 (307)
T ss_pred             CC------CCccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCc
Confidence            33      2345788999999874   356889999999999999999999999754

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-37  Score=281.77  Aligned_cols=205  Identities=20%  Similarity=0.203  Sum_probs=176.0

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCc--hHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSD--SACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++|+..+.||+|++|.||+|..  ++..+++|.+......  ...+.+..|+++++.++|+||+++++++.+....++||
T Consensus         1 ~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   80 (316)
T cd05574           1 KHFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVM   80 (316)
T ss_pred             CceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEE
Confidence            3688889999999999999999  5889999999765322  34567889999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+.+++|.+++.....   ..+++..+..++.|++.||.|||   ..+++|+||||+||+++.++.++|+|||++....
T Consensus        81 e~~~~~~L~~~~~~~~~---~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~  154 (316)
T cd05574          81 DYCPGGELFRLLQRQPG---KCLSEEVARFYAAEVLLALEYLH---LLGIVYRDLKPENILLHESGHIMLSDFDLSKQSD  154 (316)
T ss_pred             EecCCCCHHHHHHhCCC---CccCHHHHHHHHHHHHHHHHHHH---HCCeeccCCChHHeEEcCCCCEEEeecchhhccc
Confidence            99999999999875432   26899999999999999999999   8999999999999999999999999999886553


Q ss_pred             CCCce---------------------------eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          227 EGETH---------------------------IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       227 ~~~~~---------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      .....                           .......|+..|+|||++.+..++.++||||||+++|+|++|+.||..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~  234 (316)
T cd05574         155 VEPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKG  234 (316)
T ss_pred             ccccccccccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCC
Confidence            22110                           011234678899999999888899999999999999999999999975


Q ss_pred             cc
Q 038823          280 LR  281 (338)
Q Consensus       280 ~~  281 (338)
                      ..
T Consensus       235 ~~  236 (316)
T cd05574         235 SN  236 (316)
T ss_pred             Cc
Confidence            43

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>PTZ00284 protein kinase; Provisional

Probab=100.00  E-value=1.3e-38  Score=302.90  Aligned_cols=201  Identities=14%  Similarity=0.200  Sum_probs=165.7

Q ss_pred             HHHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCC------cceeeeeeee
Q 038823           65 ELEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDH------KHILKLIGCC  136 (338)
Q Consensus        65 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h------~niv~l~~~~  136 (338)
                      ++...+++|.+.+.||+|+||.||+|.+  .++.||||++....  .....+..|+.+++.++|      .+++++++++
T Consensus       123 ~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~--~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~  200 (467)
T PTZ00284        123 DIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP--KYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYF  200 (467)
T ss_pred             ccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecch--hhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEE
Confidence            4445678899999999999999999998  68889999986431  222445667777777654      4588999988


Q ss_pred             ecC-CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CCeeecCCCCCceeeCCCC--
Q 038823          137 LET-PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFP-RPIVFGNLISLCILFNEEN--  212 (338)
Q Consensus       137 ~~~-~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~-~~iiH~dik~~Nill~~~~--  212 (338)
                      ... ...++|||++ +++|.+++....     .+++..+..++.||+.||.|||   . .+|+||||||+|||++.++  
T Consensus       201 ~~~~~~~~iv~~~~-g~~l~~~l~~~~-----~l~~~~~~~i~~qi~~aL~yLH---~~~gIiHrDlKP~NILl~~~~~~  271 (467)
T PTZ00284        201 QNETGHMCIVMPKY-GPCLLDWIMKHG-----PFSHRHLAQIIFQTGVALDYFH---TELHLMHTDLKPENILMETSDTV  271 (467)
T ss_pred             EcCCceEEEEEecc-CCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---hcCCeecCCCCHHHEEEecCCcc
Confidence            754 4688999988 578999887653     5999999999999999999999   7 5999999999999998765  


Q ss_pred             --------------ceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcC
Q 038823          213 --------------VAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRD  278 (338)
Q Consensus       213 --------------~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~  278 (338)
                                    .+||+|||.+.......     ....||..|+|||++.+..++.++|||||||++|||+||+.||+
T Consensus       272 ~~~~~~~~~~~~~~~vkl~DfG~~~~~~~~~-----~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~  346 (467)
T PTZ00284        272 VDPVTNRALPPDPCRVRICDLGGCCDERHSR-----TAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYD  346 (467)
T ss_pred             cccccccccCCCCceEEECCCCccccCcccc-----ccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence                          49999999876433221     34578999999999999999999999999999999999999997


Q ss_pred             Ccc
Q 038823          279 LLR  281 (338)
Q Consensus       279 ~~~  281 (338)
                      ...
T Consensus       347 ~~~  349 (467)
T PTZ00284        347 THD  349 (467)
T ss_pred             CCC
Confidence            644

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-39  Score=299.32  Aligned_cols=233  Identities=19%  Similarity=0.228  Sum_probs=188.3

Q ss_pred             CccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCCCH
Q 038823           77 KFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTL  154 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL  154 (338)
                      -.||+|.||+||.|++  +...+|||-+.... ....+-+..|+.+-++|+|+|||+++|+|.+++.+-+.||-++||||
T Consensus       581 vVLGKGTYG~VYA~RD~~tqvrIaIKEIpekd-sr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSL  659 (1226)
T KOG4279|consen  581 VVLGKGTYGTVYAARDMDTQVRIAIKEIPEKD-SREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGSL  659 (1226)
T ss_pred             EEeecCceeEEEeeccccceeEEEeeeccccc-chhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCcH
Confidence            3699999999999999  56678999987663 33446788999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCCCCCC--CHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeC-CCCceEEecCCCCcccCCCCce
Q 038823          155 RDRIFGAPQPHFEPL--LLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFN-EENVAKLFDFSESISIPEGETH  231 (338)
Q Consensus       155 ~~~l~~~~~~~~~~l--~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~-~~~~~kl~Dfg~a~~~~~~~~~  231 (338)
                      .+++...=    .++  ++.++-.+.+||+.||.|||   ...|||||||-.|+|++ -.|.+||+|||.++....-.  
T Consensus       660 SsLLrskW----GPlKDNEstm~fYtkQILeGLkYLH---en~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAgin--  730 (1226)
T KOG4279|consen  660 SSLLRSKW----GPLKDNESTMNFYTKQILEGLKYLH---ENKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGIN--  730 (1226)
T ss_pred             HHHHHhcc----CCCccchhHHHHHHHHHHHHhhhhh---hcceeeccccCCcEEEeeccceEEecccccchhhccCC--
Confidence            99997653    267  78899999999999999999   99999999999999997 56899999999887654322  


Q ss_pred             eeeecccccCCcccccccccCC--CCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHHHHHHHhcCccccccccc
Q 038823          232 IITRSRFGAWTYSAPEYKRGGV--FNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPI  309 (338)
Q Consensus       232 ~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~  309 (338)
                      ..+....||..|||||++..++  |..++|||||||++.||.||++||.......     .    .+.+-+.+       
T Consensus       731 P~TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~Elgspq-----A----AMFkVGmy-------  794 (1226)
T KOG4279|consen  731 PCTETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQ-----A----AMFKVGMY-------  794 (1226)
T ss_pred             ccccccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCChh-----H----hhhhhcce-------
Confidence            1236677999999999998776  8999999999999999999999997654411     1    11111111       


Q ss_pred             cccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          310 IVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       310 l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                       ..-|+  ...+..+++...+++|..+||
T Consensus       795 -KvHP~--iPeelsaeak~FilrcFepd~  820 (1226)
T KOG4279|consen  795 -KVHPP--IPEELSAEAKNFILRCFEPDP  820 (1226)
T ss_pred             -ecCCC--CcHHHHHHHHHHHHHHcCCCc
Confidence             11111  122345678889999999987

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=100.00  E-value=4.1e-38  Score=276.49  Aligned_cols=237  Identities=14%  Similarity=0.142  Sum_probs=193.6

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      +|++.+.||.|+||.||+|.+  ++..+++|.+....  .....+.+.+|++++++++||||+++++++.+.+..++|+|
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVD   80 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEe
Confidence            478889999999999999999  68899999997542  22456788999999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |+.+++|.+++....     ++++..+..++.|++.||.|||   ..+++|+||+|+||++++++.++|+|||.+.....
T Consensus        81 ~~~~~~L~~~l~~~~-----~l~~~~~~~~~~~i~~~l~~lh---~~~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~  152 (258)
T cd05578          81 LLLGGDLRYHLSQKV-----KFSEEQVKFWICEIVLALEYLH---SKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTP  152 (258)
T ss_pred             CCCCCCHHHHHHhcC-----CcCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeEEcCCCCEEEeecccccccCC
Confidence            999999999997653     6899999999999999999999   89999999999999999999999999999877654


Q ss_pred             CCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHHHHHHHhcCccccccc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIAD  307 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d  307 (338)
                      ....   ....|+..|+|||.+.+..++.++|+||||+++|+|++|+.||......     ...........  ......
T Consensus       153 ~~~~---~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~-----~~~~~~~~~~~--~~~~~~  222 (258)
T cd05578         153 DTLT---TSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRT-----IRDQIRAKQET--ADVLYP  222 (258)
T ss_pred             Cccc---cccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCcc-----HHHHHHHHhcc--ccccCc
Confidence            4221   3456888999999998888999999999999999999999999865431     11112211111  111111


Q ss_pred             cccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          308 PIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       308 ~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                      +            .....+.+++.+||+.+|
T Consensus       223 ~------------~~~~~~~~~i~~~l~~~p  241 (258)
T cd05578         223 A------------TWSTEAIDAINKLLERDP  241 (258)
T ss_pred             c------------cCcHHHHHHHHHHccCCh
Confidence            1            122458899999999987

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=100.00  E-value=1.6e-37  Score=272.26  Aligned_cols=198  Identities=20%  Similarity=0.231  Sum_probs=173.5

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC----CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY----SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      +|+..+.||+|++|.||+|..  ++..|++|.+....    .....+.+.+|+.+++.++|+||+++++++.+.+..++|
T Consensus         1 ~~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   80 (258)
T cd06632           1 RWRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIF   80 (258)
T ss_pred             CccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEE
Confidence            367778999999999999998  68899999886532    133456789999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      +||+++++|.+++....     .+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.+||+|||.+...
T Consensus        81 ~e~~~~~~L~~~~~~~~-----~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~  152 (258)
T cd06632          81 LELVPGGSLAKLLKKYG-----SFPEPVIRLYTRQILLGLEYLH---DRNTVHRDIKGANILVDTNGVVKLADFGMAKQV  152 (258)
T ss_pred             EEecCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEccCccceec
Confidence            99999999999997653     5889999999999999999999   899999999999999999999999999998765


Q ss_pred             CCCCceeeeecccccCCcccccccccCC-CCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGV-FNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ....   ......++..|+|||.+.... ++.++|+||||+++|+|++|+.||...
T Consensus       153 ~~~~---~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~  205 (258)
T cd06632         153 VEFS---FAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQL  205 (258)
T ss_pred             cccc---cccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccC
Confidence            4433   114456888999999987766 899999999999999999999999753

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=100.00  E-value=1.6e-37  Score=272.29  Aligned_cols=200  Identities=18%  Similarity=0.172  Sum_probs=172.2

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeec-CCcceEEEe
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLE-TPIPILVFE  147 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~-~~~~~lv~e  147 (338)
                      +|++.+.||.|++|.||++.+  +++.+++|.+.... .....+.+.+|+.++++++|+|++++++.+.. .+..++|||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e   80 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMG   80 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEec
Confidence            478889999999999999998  67889999986542 33445678899999999999999999998764 446789999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |+++++|.+++.....   ..+++.++..++.+++.||.+||   +.+++|+||+|+||+++.++.++|+|||++.....
T Consensus        81 ~~~~~~l~~~l~~~~~---~~l~~~~~~~~~~~l~~~l~~lH---~~~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~  154 (257)
T cd08223          81 FCEGGDLYHKLKEQKG---KLLPENQVVEWFVQIAMALQYLH---EKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLEN  154 (257)
T ss_pred             ccCCCcHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCchhEEEecCCcEEEecccceEEecc
Confidence            9999999999876432   25899999999999999999999   89999999999999999999999999999876643


Q ss_pred             CCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ....  .....+++.|+|||...+..++.++|+||||+++++|++|+.||..
T Consensus       155 ~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~  204 (257)
T cd08223         155 QCDM--ASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNA  204 (257)
T ss_pred             cCCc--cccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCC
Confidence            3221  1344688899999999988899999999999999999999999974

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=100.00  E-value=1.4e-37  Score=274.49  Aligned_cols=202  Identities=20%  Similarity=0.241  Sum_probs=172.1

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC----CchHHHHHHHHHHHHhccCCcceeeeeeeeec--CCcc
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY----SDSACKFSINNIVYAAQMDHKHILKLIGCCLE--TPIP  142 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~  142 (338)
                      .+|+..+.||+|+||.||+|..  ++..|++|.+....    .......+.+|+.++++++|+||+++++++.+  ....
T Consensus         2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (266)
T cd06651           2 INWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTL   81 (266)
T ss_pred             CCccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEE
Confidence            5799999999999999999998  68899999886432    22345678899999999999999999998865  3567


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSES  222 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a  222 (338)
                      ++++||+++++|.+++....     .+++...+.++.|++.||.|||   +.+++|+||+|+||+++.++.+||+|||++
T Consensus        82 ~l~~e~~~~~~L~~~l~~~~-----~l~~~~~~~~~~qi~~~l~~LH---~~~i~H~~l~p~nil~~~~~~~~l~dfg~~  153 (266)
T cd06651          82 TIFMEYMPGGSVKDQLKAYG-----ALTESVTRKYTRQILEGMSYLH---SNMIVHRDIKGANILRDSAGNVKLGDFGAS  153 (266)
T ss_pred             EEEEeCCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCCCEEEccCCCc
Confidence            89999999999999997653     5889999999999999999999   899999999999999999999999999998


Q ss_pred             cccCCCCce-eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          223 ISIPEGETH-IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       223 ~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ......... .......++..|+|||.+.+..++.++|||||||++|||++|+.||...
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~  212 (266)
T cd06651         154 KRLQTICMSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEY  212 (266)
T ss_pred             cccccccccCCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCcccc
Confidence            765332111 1112345788999999998888999999999999999999999999753

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=6e-39  Score=294.45  Aligned_cols=197  Identities=20%  Similarity=0.236  Sum_probs=169.6

Q ss_pred             cCCccccCCCceEEEEEE--CCeEEE---EEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCc--ceEEEe
Q 038823           75 ERKFIKQDSTYKLYKGFW--QERLIS---VMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPI--PILVFE  147 (338)
Q Consensus        75 ~~~~lg~G~~g~Vy~~~~--~~~~va---ik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~--~~lv~e  147 (338)
                      ....||+|+|-+||+|.+  +|-.||   +|.-....+....++|..|+.+|+.|+|+||+++|+++.+...  ..+|+|
T Consensus        44 ~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iTE  123 (632)
T KOG0584|consen   44 FDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFITE  123 (632)
T ss_pred             hhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeeee
Confidence            346799999999999999  555554   2322223355667899999999999999999999999987655  889999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC-CceEEecCCCCcccC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE-NVAKLFDFSESISIP  226 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~-~~~kl~Dfg~a~~~~  226 (338)
                      .+..|+|..++.+..     .++.+.+..|++||++||.|||+. ..+|||||||..|||++.+ |.+||+|+|+|....
T Consensus       124 L~TSGtLr~Y~kk~~-----~vn~kaik~W~RQILkGL~yLHs~-~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r  197 (632)
T KOG0584|consen  124 LFTSGTLREYRKKHR-----RVNIKAIKSWCRQILKGLVYLHSQ-DPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLR  197 (632)
T ss_pred             cccCCcHHHHHHHhc-----cCCHHHHHHHHHHHHHHhhhhhcC-CCCccccccccceEEEcCCcCceeecchhHHHHhh
Confidence            999999999999886     588999999999999999999976 6799999999999999855 899999999999876


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ....    ....||+.|||||.+. ..|+..+||||||++++||+|+..||.....
T Consensus       198 ~s~a----ksvIGTPEFMAPEmYE-E~YnE~VDVYaFGMCmLEMvT~eYPYsEC~n  248 (632)
T KOG0584|consen  198 KSHA----KSVIGTPEFMAPEMYE-ENYNELVDVYAFGMCMLEMVTSEYPYSECTN  248 (632)
T ss_pred             cccc----ceeccCccccChHHHh-hhcchhhhhhhhhHHHHHHHhccCChhhhCC
Confidence            5443    4468999999999987 7799999999999999999999999986544

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=100.00  E-value=2.4e-37  Score=272.12  Aligned_cols=201  Identities=19%  Similarity=0.221  Sum_probs=179.2

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      ++|++.+.||+|++|.||+|..  ++..+++|++...........+.+|+..+.+++|+||+++++++...+..++||||
T Consensus         1 ~~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (264)
T cd06623           1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEY   80 (264)
T ss_pred             CcceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEe
Confidence            4688899999999999999999  58899999987664434567899999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFP-RPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~-~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      +++++|.+++....     .+++..++.++.|++.||.|||   + .+++|+||+|+||+++.++.++|+|||.+.....
T Consensus        81 ~~~~~L~~~l~~~~-----~l~~~~~~~~~~~l~~~l~~lh---~~~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~  152 (264)
T cd06623          81 MDGGSLADLLKKVG-----KIPEPVLAYIARQILKGLDYLH---TKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLEN  152 (264)
T ss_pred             cCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHh---ccCCCccCCCCHHHEEECCCCCEEEccCccceeccc
Confidence            99999999997653     6899999999999999999999   8 9999999999999999999999999999887654


Q ss_pred             CCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      .....  ....++..|+|||.+.+..++.++|+||||+++|+|+||+.||....
T Consensus       153 ~~~~~--~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~  204 (264)
T cd06623         153 TLDQC--NTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPG  204 (264)
T ss_pred             CCCcc--cceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccc
Confidence            43221  24457889999999998889999999999999999999999997654

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=100.00  E-value=1.4e-37  Score=278.04  Aligned_cols=203  Identities=20%  Similarity=0.243  Sum_probs=171.6

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++++|.+.+.||+|+||.||+|..  +++.+++|.+...........+.+|+.+++.++|+||+++++++.+++..++||
T Consensus         3 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~   82 (291)
T cd07870           3 AATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVF   82 (291)
T ss_pred             ccceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEE
Confidence            357799999999999999999988  788999999875543333346788999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+. ++|.+.+.....    .+++..+..++.|++.||.|||   ..+|+|+||||+||+++.++.+||+|||+++...
T Consensus        83 e~~~-~~l~~~~~~~~~----~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~  154 (291)
T cd07870          83 EYMH-TDLAQYMIQHPG----GLHPYNVRLFMFQLLRGLAYIH---GQHILHRDLKPQNLLISYLGELKLADFGLARAKS  154 (291)
T ss_pred             eccc-CCHHHHHHhCCC----CCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChHHEEEcCCCcEEEeccccccccC
Confidence            9997 788777755432    5788889999999999999999   8999999999999999999999999999987643


Q ss_pred             CCCceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      .....  .....++..|+|||.+.+. .++.++||||||+++|+|+||+.||....
T Consensus       155 ~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~  208 (291)
T cd07870         155 IPSQT--YSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVS  208 (291)
T ss_pred             CCCCC--CCCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCch
Confidence            32211  1334578899999998754 47889999999999999999999997543

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=100.00  E-value=7.4e-38  Score=280.12  Aligned_cols=196  Identities=18%  Similarity=0.246  Sum_probs=170.4

Q ss_pred             CCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecC
Q 038823           73 YDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGE  150 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~  150 (338)
                      |.....||+|+||.||++..  ++..|++|.+... .....+.+.+|+.++++++|+||+++++++..++..++||||++
T Consensus        24 ~~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~  102 (292)
T cd06658          24 LDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLR-KQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLE  102 (292)
T ss_pred             HhhhhcccCCCCeEEEEEEECCCCCEEEEEEEecc-hHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCC
Confidence            44456799999999999998  7889999998654 33445678899999999999999999999999999999999999


Q ss_pred             CCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCc
Q 038823          151 YTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGET  230 (338)
Q Consensus       151 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~  230 (338)
                      +++|.+++...      .+++..+..++.|++.||.|||   +.+|+||||||+||++++++.++|+|||++........
T Consensus       103 ~~~L~~~~~~~------~l~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~  173 (292)
T cd06658         103 GGALTDIVTHT------RMNEEQIATVCLSVLRALSYLH---NQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVP  173 (292)
T ss_pred             CCcHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH---HCCEeecCCCHHHEEEcCCCCEEEccCcchhhcccccc
Confidence            99999988543      5889999999999999999999   89999999999999999999999999999876543222


Q ss_pred             eeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          231 HIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       231 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .  .....|+..|+|||.+.+..++.++|+||||+++|||++|+.||...
T Consensus       174 ~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~  221 (292)
T cd06658         174 K--RKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNE  221 (292)
T ss_pred             c--CceeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            1  13345889999999998888999999999999999999999999753

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=100.00  E-value=2.4e-37  Score=272.77  Aligned_cols=202  Identities=19%  Similarity=0.214  Sum_probs=171.6

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC----CchHHHHHHHHHHHHhccCCcceeeeeeeeecC--Ccc
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY----SDSACKFSINNIVYAAQMDHKHILKLIGCCLET--PIP  142 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~  142 (338)
                      ++|+..+.||+|+||.||+|.+  ++..|++|.+....    .....+.+.+|+.++++++|+||+++++++.+.  ..+
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTL   81 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceE
Confidence            5788999999999999999998  68899999875321    123456788999999999999999999998763  457


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSES  222 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a  222 (338)
                      ++||||+++++|.+++....     .+++..+.+++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||.+
T Consensus        82 ~~v~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~~l~Dfg~~  153 (265)
T cd06652          82 SIFMEHMPGGSIKDQLKSYG-----ALTENVTRKYTRQILEGVSYLH---SNMIVHRDIKGANILRDSVGNVKLGDFGAS  153 (265)
T ss_pred             EEEEEecCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEecCCCCEEECcCccc
Confidence            89999999999999987653     5888999999999999999999   899999999999999999999999999998


Q ss_pred             cccCCCCce-eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          223 ISIPEGETH-IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       223 ~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ......... .......++..|+|||.+.+..++.++||||||+++|+|++|+.||...
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~  212 (265)
T cd06652         154 KRLQTICLSGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEF  212 (265)
T ss_pred             cccccccccccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCcc
Confidence            765322111 0113345888999999998888999999999999999999999999743

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=100.00  E-value=1.3e-37  Score=278.63  Aligned_cols=200  Identities=19%  Similarity=0.249  Sum_probs=175.1

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      .++|.+.+.||+|+||.||+|..  ++..+++|.+... .....+.+.+|+.++++++||||+++++++...+..++|+|
T Consensus        18 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~-~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e   96 (293)
T cd06647          18 KKKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQ-QQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVME   96 (293)
T ss_pred             hhhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccc-cchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEe
Confidence            36788899999999999999987  7788999998644 23334678899999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |+++++|.+++.+.      .+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||++.....
T Consensus        97 ~~~~~~L~~~~~~~------~l~~~~~~~i~~~l~~al~~LH---~~gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~  167 (293)
T cd06647          97 YLAGGSLTDVVTET------CMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITP  167 (293)
T ss_pred             cCCCCcHHHHHhhc------CCCHHHHHHHHHHHHHHHHHHH---hCCEeeccCCHHHEEEcCCCCEEEccCcceecccc
Confidence            99999999998653      4789999999999999999999   99999999999999999999999999998876544


Q ss_pred             CCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      .....  ....++..|+|||.+....++.++|+||||+++|++++|+.||...+
T Consensus       168 ~~~~~--~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~  219 (293)
T cd06647         168 EQSKR--STMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNEN  219 (293)
T ss_pred             ccccc--ccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            32211  33468889999999988889999999999999999999999997543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=1.9e-37  Score=272.05  Aligned_cols=188  Identities=27%  Similarity=0.391  Sum_probs=161.2

Q ss_pred             CccccCCCceEEEEEE--CC----------eEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           77 KFIKQDSTYKLYKGFW--QE----------RLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~--~~----------~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      +.||+|+||.||+|.+  .+          ..+++|.+......  ...+.+|+.++++++|+||+++++++.. +..++
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~--~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~l   77 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRD--SLAFFETASLMSQLSHKHLVKLYGVCVR-DENIM   77 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhh--HHHHHHHHHHHHcCCCcchhheeeEEec-CCcEE
Confidence            3689999999999999  23          24777776644222  5778999999999999999999999988 77899


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC-------ceEEe
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN-------VAKLF  217 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~-------~~kl~  217 (338)
                      ||||+++|+|.+++.....    .+++..+..++.|++.||.|||   +.+|+|+||||+||+++.++       .+||+
T Consensus        78 v~e~~~~~~L~~~l~~~~~----~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~  150 (259)
T cd05037          78 VEEYVKFGPLDVFLHREKN----NVSLHWKLDVAKQLASALHYLE---DKKLVHGNVCGKNILVARYGLNEGYVPFIKLS  150 (259)
T ss_pred             EEEcCCCCcHHHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHh---hCCeecccCccceEEEecCccccCCceeEEeC
Confidence            9999999999999987653    5899999999999999999999   89999999999999999888       79999


Q ss_pred             cCCCCcccCCCCceeeeecccccCCcccccccccC--CCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          218 DFSESISIPEGETHIITRSRFGAWTYSAPEYKRGG--VFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       218 Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      |||++......      ....++..|+|||++...  .++.++||||||+++|+|++ |..||...
T Consensus       151 Dfg~a~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~  210 (259)
T cd05037         151 DPGIPITVLSR------EERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTL  210 (259)
T ss_pred             CCCcccccccc------cccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccC
Confidence            99998765442      334567789999998876  78999999999999999999 57777654

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=100.00  E-value=9.2e-38  Score=280.18  Aligned_cols=193  Identities=18%  Similarity=0.227  Sum_probs=169.0

Q ss_pred             CCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCCC
Q 038823           76 RKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTT  153 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gs  153 (338)
                      ...||+|+||.||+|..  +++.|++|.+.... ....+.+.+|+.++..++||||+++++++..++..++|+||+++++
T Consensus        26 ~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~-~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~~~  104 (297)
T cd06659          26 YIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRK-QQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQGGA  104 (297)
T ss_pred             hhhcCCCCceeEEEEEEcCCCCEEEEEEEEecc-cchHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCCCCC
Confidence            45799999999999998  78899999986542 2334668899999999999999999999999999999999999999


Q ss_pred             HHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCceee
Q 038823          154 LRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHII  233 (338)
Q Consensus       154 L~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~  233 (338)
                      |.+++...      .+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.+||+|||++.........  
T Consensus       105 L~~~~~~~------~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~~--  173 (297)
T cd06659         105 LTDIVSQT------RLNEEQIATVCESVLQALCYLH---SQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPK--  173 (297)
T ss_pred             HHHHHhhc------CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHeEEccCCcEEEeechhHhhccccccc--
Confidence            99987542      5899999999999999999999   899999999999999999999999999998765433221  


Q ss_pred             eecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          234 TRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       234 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .....|+..|+|||++.+..++.++||||||+++|||++|+.||...
T Consensus       174 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~  220 (297)
T cd06659         174 RKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSD  220 (297)
T ss_pred             ccceecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            13456889999999998888999999999999999999999999743

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=100.00  E-value=4.2e-37  Score=269.51  Aligned_cols=200  Identities=25%  Similarity=0.339  Sum_probs=173.9

Q ss_pred             CCcCCccccCCCceEEEEEEC--C----eEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           73 YDERKFIKQDSTYKLYKGFWQ--E----RLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~~--~----~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      |++.+.||.|+||.||++.+.  +    ..+|+|.+.........+.+..|+.++..++|+||+++++++.+.+..+++|
T Consensus         1 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~   80 (258)
T smart00219        1 LTLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVM   80 (258)
T ss_pred             CcccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEE
Confidence            356788999999999999993  3    7899999976644446678999999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++++|.+++.....   ..+++..+..++.|++.||.|||   +.+++|+||+|+||++++++.++|+|||.+....
T Consensus        81 e~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~ql~~~l~~lh---~~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~  154 (258)
T smart00219       81 EYMEGGDLLDYLRKNRP---KELSLSDLLSFALQIARGMEYLE---SKNFIHRDLAARNCLVGENLVVKISDFGLSRDLY  154 (258)
T ss_pred             eccCCCCHHHHHHhhhh---ccCCHHHHHHHHHHHHHHHHHHh---cCCeeecccccceEEEccCCeEEEcccCCceecc
Confidence            99999999999976542   12899999999999999999999   8999999999999999999999999999998776


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCC
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDL  279 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~  279 (338)
                      ....... ....++..|+|||.+.+..++.++|+||||+++++|++ |++||..
T Consensus       155 ~~~~~~~-~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~  207 (258)
T smart00219      155 DDDYYKK-KGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPG  207 (258)
T ss_pred             ccccccc-ccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCC
Confidence            5533322 12337789999999988889999999999999999998 8888875

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=100.00  E-value=4.3e-37  Score=271.66  Aligned_cols=202  Identities=19%  Similarity=0.248  Sum_probs=170.1

Q ss_pred             CCCcCCccccCCCceEEEEEE---CCeEEEEEEeCcC---------CCchHHHHHHHHHHHHhc-cCCcceeeeeeeeec
Q 038823           72 NYDERKFIKQDSTYKLYKGFW---QERLISVMKYNES---------YSDSACKFSINNIVYAAQ-MDHKHILKLIGCCLE  138 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~---~~~~vaik~~~~~---------~~~~~~~~~~~e~~~l~~-l~h~niv~l~~~~~~  138 (338)
                      +|++.+.||+|+||.||+|.+   .+..+++|.+...         ........+.+|+.++.+ ++|+||+++++++.+
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   80 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE   80 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence            478889999999999999998   3578999987532         123345667889888865 789999999999999


Q ss_pred             CCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEec
Q 038823          139 TPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFD  218 (338)
Q Consensus       139 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~D  218 (338)
                      ++..++||||+++++|.+++...... ...+++..++.++.|++.||.|||+  ..+++|+||+|+||+++.++.++|+|
T Consensus        81 ~~~~~lv~e~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~lh~--~~~i~H~dl~~~nil~~~~~~~~l~d  157 (269)
T cd08528          81 NDRLYIVMDLIEGAPLGEHFNSLKEK-KQRFTEERIWNIFVQMVLALRYLHK--EKRIVHRDLTPNNIMLGEDDKVTITD  157 (269)
T ss_pred             CCeEEEEEecCCCCcHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHhcc--CCceeecCCCHHHEEECCCCcEEEec
Confidence            99999999999999999987542111 1268999999999999999999992  26899999999999999999999999


Q ss_pred             CCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          219 FSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       219 fg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ||.+........   .....|+..|+|||.+.+..++.++|+||||+++|+|++|+.||..
T Consensus       158 fg~~~~~~~~~~---~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~  215 (269)
T cd08528         158 FGLAKQKQPESK---LTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYS  215 (269)
T ss_pred             ccceeecccccc---cccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccc
Confidence            999877654431   1455688999999999988899999999999999999999999964

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=100.00  E-value=2.4e-37  Score=272.93  Aligned_cols=201  Identities=16%  Similarity=0.247  Sum_probs=173.3

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC-----chHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS-----DSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~-----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      +|+..+.||+|++|.||+|..  ++..+++|.+.....     ....+.+.+|+.++++++|+||+++++++.+.+..++
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   80 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNL   80 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEE
Confidence            478889999999999999998  788999999875431     1234678899999999999999999999999999999


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC-ceEEecCCCCc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN-VAKLFDFSESI  223 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~-~~kl~Dfg~a~  223 (338)
                      |+||+++++|.+++.+..     ++++..+..++.|++.||.|||   +.+++|+||+|+||+++.++ .+||+|||.+.
T Consensus        81 v~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~ql~~al~~LH---~~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~  152 (268)
T cd06630          81 FVEWMAGGSVSHLLSKYG-----AFKEAVIINYTEQLLRGLSYLH---ENQIIHRDVKGANLLIDSTGQRLRIADFGAAA  152 (268)
T ss_pred             EEeccCCCcHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEEccccccc
Confidence            999999999999997653     6899999999999999999999   89999999999999998776 59999999987


Q ss_pred             ccCCCCce--eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          224 SIPEGETH--IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       224 ~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ........  .......++..|+|||.+.+..++.++|+||+|+++|+|++|+.||...
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~  211 (268)
T cd06630         153 RLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAE  211 (268)
T ss_pred             ccccccccCCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCC
Confidence            76543211  1113345788999999998888999999999999999999999999743

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=100.00  E-value=6e-38  Score=279.67  Aligned_cols=201  Identities=22%  Similarity=0.262  Sum_probs=173.1

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      ++|+..+.||+|++|.||+|.+  +++.|++|.+.... .....+.+.+|++++++++|+||+++++++..++..++|||
T Consensus         1 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e   80 (288)
T cd07833           1 NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFE   80 (288)
T ss_pred             CceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEe
Confidence            3688889999999999999998  67899999987543 23334678999999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |++++.+..+.....     .+++..+..++.|++.||.|||   ..+++|+||+|+||++++++.+||+|||++.....
T Consensus        81 ~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~  152 (288)
T cd07833          81 YVERTLLELLEASPG-----GLPPDAVRSYIWQLLQAIAYCH---SHNIIHRDIKPENILVSESGVLKLCDFGFARALRA  152 (288)
T ss_pred             cCCCCHHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCCEEEEeeecccccCC
Confidence            999876666554432     5899999999999999999999   89999999999999999999999999999887655


Q ss_pred             CCceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ...... ....++..|+|||++.+. .++.++||||||+++|+|++|++||...
T Consensus       153 ~~~~~~-~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~  205 (288)
T cd07833         153 RPASPL-TDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGD  205 (288)
T ss_pred             Cccccc-cCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            432111 345678899999999887 7899999999999999999999999754

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=100.00  E-value=3.9e-37  Score=269.64  Aligned_cols=200  Identities=20%  Similarity=0.228  Sum_probs=174.1

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      +|+..+.||+|++|.||++..  +++.+++|.+.... .......+.+|+.++++++|+||+++++.+..++..++||||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEY   80 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEec
Confidence            477889999999999999998  78889999987542 344567789999999999999999999999989999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC-CceEEecCCCCcccCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE-NVAKLFDFSESISIPE  227 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~-~~~kl~Dfg~a~~~~~  227 (338)
                      +++++|.+++.....   ..+++..+..++.+++.||.|||   +.+++|+||+|+||+++.+ +.+||+|||.+.....
T Consensus        81 ~~~~~L~~~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lh---~~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~  154 (256)
T cd08220          81 APGGTLAEYIQKRCN---SLLDEDTILHFFVQILLALHHVH---TKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSS  154 (256)
T ss_pred             CCCCCHHHHHHHhcc---cCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEEccCCCceecCC
Confidence            999999999976432   25899999999999999999999   8999999999999999855 4689999999987654


Q ss_pred             CCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ....   ....++..|+|||.+....++.++||||||+++|+|++|+.||...
T Consensus       155 ~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~  204 (256)
T cd08220         155 KSKA---YTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAA  204 (256)
T ss_pred             Cccc---cccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccC
Confidence            3321   3346788999999998888999999999999999999999999753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=100.00  E-value=4.6e-37  Score=270.40  Aligned_cols=201  Identities=21%  Similarity=0.276  Sum_probs=175.3

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC-chHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS-DSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      +|+..+.||+|+||.||+|..  +++.+++|.+..... ....+.+.+|+.++++++|+||+++++++...+..++|+||
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEY   80 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEec
Confidence            477889999999999999998  788999999876533 24567899999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      +++++|.+++....     .+++..+..++.+++.||.|||   +.+++|+||+|+||++++++.+||+|||.+......
T Consensus        81 ~~~~~L~~~~~~~~-----~~~~~~~~~i~~~i~~~l~~lh---~~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~  152 (264)
T cd06626          81 CSGGTLEELLEHGR-----ILDEHVIRVYTLQLLEGLAYLH---SHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNN  152 (264)
T ss_pred             CCCCcHHHHHhhcC-----CCChHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEcccccccccCCC
Confidence            99999999997653     4789999999999999999999   899999999999999999999999999998876544


Q ss_pred             Cceee--eecccccCCcccccccccCC---CCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          229 ETHII--TRSRFGAWTYSAPEYKRGGV---FNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       229 ~~~~~--~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .....  .....++..|+|||++....   .+.++||||||+++|+|++|+.||...
T Consensus       153 ~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~  209 (264)
T cd06626         153 TTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSEL  209 (264)
T ss_pred             CCcccccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCC
Confidence            33211  12345788999999988766   889999999999999999999999753

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=5.4e-37  Score=273.78  Aligned_cols=202  Identities=19%  Similarity=0.172  Sum_probs=173.0

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecC--CcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLET--PIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~lv~  146 (338)
                      ++|...+.||.|++|.||+|.+  +++.+++|.+...........+.+|++++++++|+||+++++++.+.  +.+++||
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   80 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAM   80 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEE
Confidence            3677889999999999999999  68899999987654445567789999999999999999999998653  4689999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++++|.+++..... ....+++..+..++.|++.||.|||   ..+++|+||+|.||+++.++.++|+|||++....
T Consensus        81 e~~~~~~L~~~l~~~~~-~~~~l~~~~~~~i~~~i~~~L~~lH---~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~  156 (287)
T cd06621          81 EYCEGGSLDSIYKKVKK-RGGRIGEKVLGKIAESVLKGLSYLH---SRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELV  156 (287)
T ss_pred             EecCCCCHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEecCCeEEEeecccccccc
Confidence            99999999988754221 1126889999999999999999999   8999999999999999999999999999987654


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ....    ....++..|+|||.+.+..++.++||||||+++|+|++|+.||...
T Consensus       157 ~~~~----~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  206 (287)
T cd06621         157 NSLA----GTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPE  206 (287)
T ss_pred             cccc----ccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcc
Confidence            3221    2345788899999998888999999999999999999999999854

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=100.00  E-value=5.1e-38  Score=279.74  Aligned_cols=198  Identities=15%  Similarity=0.221  Sum_probs=168.2

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC-chHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS-DSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      +|+..+.||+|+||.||+|.+  +|..+++|.+..... ......+.+|+.++++++|+||+++++++.+.+..++|+||
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   80 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEY   80 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEec
Confidence            477788999999999999999  788999999865422 22235677899999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      ++ ++|.+++.....    .+++..+..++.||+.||.|||   ..+++|+||||+||+++.++.+||+|||++......
T Consensus        81 ~~-~~l~~~~~~~~~----~~~~~~~~~~~~qi~~al~~LH---~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~  152 (284)
T cd07839          81 CD-QDLKKYFDSCNG----DIDPEIVKSFMFQLLKGLAFCH---SHNVLHRDLKPQNLLINKNGELKLADFGLARAFGIP  152 (284)
T ss_pred             CC-CCHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEEcCCCcEEECccchhhccCCC
Confidence            98 688888765432    6899999999999999999999   899999999999999999999999999998765433


Q ss_pred             CceeeeecccccCCcccccccccCC-CCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGV-FNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ....  ....++..|+|||.+.+.. ++.++|||||||++|+|+||..|+..
T Consensus       153 ~~~~--~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~  202 (284)
T cd07839         153 VRCY--SAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFP  202 (284)
T ss_pred             CCCc--CCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcC
Confidence            2211  3345788999999887644 78999999999999999999988653

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=100.00  E-value=8.5e-38  Score=278.94  Aligned_cols=245  Identities=16%  Similarity=0.183  Sum_probs=184.6

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-CcceeeeeeeeecCCcceEEEee
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      +|...+.||+|+||.||++..  +++.+|+|.+...........+.+|+.++.++. |+||+++++++...+..+++|||
T Consensus         5 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e~   84 (288)
T cd06616           5 DLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICMEL   84 (288)
T ss_pred             HhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEec
Confidence            455667899999999999999  788999999876544455577889999999996 99999999999998899999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      +. +++.++...........+++..+..++.+++.||+|||+  ..+++||||||+||+++.++.+||+|||++......
T Consensus        85 ~~-~~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~--~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~  161 (288)
T cd06616          85 MD-ISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKE--ELKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVDS  161 (288)
T ss_pred             cc-CCHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhh--cCCeeccCCCHHHEEEccCCcEEEeecchhHHhccC
Confidence            88 566554321100001268999999999999999999993  359999999999999999999999999998765433


Q ss_pred             CceeeeecccccCCcccccccccC---CCCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHHHHHHHhcCccccc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGG---VFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEI  305 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~---~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  305 (338)
                      ...   ....|+..|+|||.+.+.   .++.++||||||+++|+|++|+.||....      ...+.+.......     
T Consensus       162 ~~~---~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~------~~~~~~~~~~~~~-----  227 (288)
T cd06616         162 IAK---TRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWN------SVFDQLTQVVKGD-----  227 (288)
T ss_pred             Ccc---ccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcc------hHHHHHhhhcCCC-----
Confidence            221   334578899999998766   68999999999999999999999997432      1222222211111     


Q ss_pred             cccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          306 ADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       306 ~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                       .+.+..+    .......++.+++.+||+.+|
T Consensus       228 -~~~~~~~----~~~~~~~~l~~li~~~l~~~p  255 (288)
T cd06616         228 -PPILSNS----EEREFSPSFVNFINLCLIKDE  255 (288)
T ss_pred             -CCcCCCc----CCCccCHHHHHHHHHHccCCh
Confidence             1111111    111233468889999999887

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=3.2e-37  Score=279.10  Aligned_cols=199  Identities=17%  Similarity=0.180  Sum_probs=161.4

Q ss_pred             CCccccCCCceEEEEEE----CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeec--CCcceEEEeec
Q 038823           76 RKFIKQDSTYKLYKGFW----QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLE--TPIPILVFEYG  149 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~----~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~~lv~e~~  149 (338)
                      .+.||+|+||.||+|..    ++..+|+|.+.....   ...+.+|+.++++++||||+++++++..  +...++||||+
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~---~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~   82 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGI---SMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYA   82 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCCC---cHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEecc
Confidence            46899999999999986    457899999875422   2456789999999999999999998864  44578999999


Q ss_pred             CCCCHHHhhhcCCC----CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceee----CCCCceEEecCCC
Q 038823          150 EYTTLRDRIFGAPQ----PHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILF----NEENVAKLFDFSE  221 (338)
Q Consensus       150 ~~gsL~~~l~~~~~----~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill----~~~~~~kl~Dfg~  221 (338)
                      . ++|.+++.....    .....+++..+..++.|++.||.|||   +.+|+||||||+|||+    +.++.+||+|||+
T Consensus        83 ~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~  158 (317)
T cd07868          83 E-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVKIADMGF  158 (317)
T ss_pred             C-CCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHH---hCCEEcCCCCHHHEEEecCCCCcCcEEEeecCc
Confidence            7 688888753321    11125899999999999999999999   9999999999999999    4567899999999


Q ss_pred             CcccCCCCce-eeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          222 SISIPEGETH-IITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       222 a~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ++........ .......||+.|+|||++.+. .++.++||||+||++|||++|++||....
T Consensus       159 a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~  220 (317)
T cd07868         159 ARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQ  220 (317)
T ss_pred             eeccCCCCccccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccCCc
Confidence            9876543221 111345689999999998764 58999999999999999999999997533

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=100.00  E-value=1.1e-37  Score=273.45  Aligned_cols=200  Identities=22%  Similarity=0.193  Sum_probs=174.3

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      +|+..+.||+|+||.+|++..  +++.+++|.+.... .......+.+|+.++++++|+||+++++++.+.+..++|+||
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDY   80 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEec
Confidence            478889999999999999998  78899999986432 334456789999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      +++++|.+++.....   ..+++.++..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||.+......
T Consensus        81 ~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~  154 (256)
T cd08218          81 CEGGDLYKKINAQRG---VLFPEDQILDWFVQICLALKHVH---DRKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNST  154 (256)
T ss_pred             CCCCcHHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCEEEeeccceeecCcc
Confidence            999999999875432   25789999999999999999999   899999999999999999999999999998766443


Q ss_pred             CceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ....  ....|+..|+|||++.+...+.++|+||||+++++|+||+.||..
T Consensus       155 ~~~~--~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~  203 (256)
T cd08218         155 VELA--RTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEA  203 (256)
T ss_pred             hhhh--hhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccC
Confidence            2211  234578899999999888899999999999999999999999974

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=100.00  E-value=2.2e-37  Score=275.22  Aligned_cols=197  Identities=20%  Similarity=0.246  Sum_probs=166.4

Q ss_pred             CCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-CcceeeeeeeeecC--CcceEEEe
Q 038823           73 YDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCLET--PIPILVFE  147 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~--~~~~lv~e  147 (338)
                      |++.+.||+|+||.||+|..  ++..+|+|.+.............+|+..+.++. |+||+++++++.+.  +..++|||
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e   80 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFE   80 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEe
Confidence            56678899999999999998  788999999876543333344568899999886 99999999999887  88999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |++ ++|.+.+.....    .+++..+..++.|++.||.|||   ..+++|+||+|+||+++. +.+||+|||++.....
T Consensus        81 ~~~-~~l~~~l~~~~~----~~~~~~~~~~~~qi~~~L~~LH---~~~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~  151 (282)
T cd07831          81 LMD-MNLYELIKGRKR----PLPEKRVKSYMYQLLKSLDHMH---RNGIFHRDIKPENILIKD-DILKLADFGSCRGIYS  151 (282)
T ss_pred             cCC-ccHHHHHHhccC----CCCHHHHHHHHHHHHHHHHHHH---HCCceecccCHHHEEEcC-CCeEEEeccccccccc
Confidence            998 688888876432    6899999999999999999999   899999999999999999 9999999999876644


Q ss_pred             CCceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ....   ....++..|+|||.+.. ..++.++|||||||++|||++|..||...+
T Consensus       152 ~~~~---~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~  203 (282)
T cd07831         152 KPPY---TEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTN  203 (282)
T ss_pred             CCCc---CCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCC
Confidence            3221   23457889999997644 557899999999999999999999997643

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=3e-40  Score=271.37  Aligned_cols=201  Identities=20%  Similarity=0.221  Sum_probs=176.7

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcC-CCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNES-YSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~-~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      ..++.|++...||+|.|+.||++..  +|+.+|+|+++.. .+....+.+.+|+.+-+.|+||||++|.+...+....|+
T Consensus         8 ~f~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~yl   87 (355)
T KOG0033|consen    8 KFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYL   87 (355)
T ss_pred             ccchhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEE
Confidence            3456788889999999999999988  8899999888643 244466889999999999999999999999999999999


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC---ceEEecCCC
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN---VAKLFDFSE  221 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~---~~kl~Dfg~  221 (338)
                      |+|+|.|++|..-|-...     .+++..+...+.||++||.|+|   ..+|||||+||+|+++.+..   -+||+|||+
T Consensus        88 vFe~m~G~dl~~eIV~R~-----~ySEa~aSH~~rQiLeal~yCH---~n~IvHRDvkP~nllLASK~~~A~vKL~~FGv  159 (355)
T KOG0033|consen   88 VFDLVTGGELFEDIVARE-----FYSEADASHCIQQILEALAYCH---SNGIVHRDLKPENLLLASKAKGAAVKLADFGL  159 (355)
T ss_pred             EEecccchHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH---hcCceeccCChhheeeeeccCCCceeecccce
Confidence            999999999976554432     5888999999999999999999   99999999999999996443   489999999


Q ss_pred             CcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          222 SISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       222 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      |.....+..   ....+||++|||||++...+|+..+||||.||+||-|+.|.+||..
T Consensus       160 Ai~l~~g~~---~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~  214 (355)
T KOG0033|consen  160 AIEVNDGEA---WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWD  214 (355)
T ss_pred             EEEeCCccc---cccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCC
Confidence            998874332   2678899999999999999999999999999999999999999986

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=100.00  E-value=1.5e-37  Score=276.89  Aligned_cols=201  Identities=18%  Similarity=0.225  Sum_probs=173.8

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC-chHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS-DSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      +|++.+.||+|++|.||+|.+  ++..|++|++..... ......+.+|+.++++++|+||+++++++..++..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~   80 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEY   80 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEecc
Confidence            477889999999999999998  788999999876532 33456789999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      + +++|.+++.....    .+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||.+......
T Consensus        81 ~-~~~L~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~  152 (286)
T cd07832          81 M-PSDLSEVLRDEER----PLPEAQVKSYMRMLLKGVAYMH---ANGIMHRDLKPANLLISADGVLKIADFGLARLFSEE  152 (286)
T ss_pred             c-CCCHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCcCHHHEEEcCCCcEEEeeeeecccccCC
Confidence            9 8999999876543    6999999999999999999999   899999999999999999999999999998876543


Q ss_pred             CceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ... ......++..|+|||.+.+. .++.++||||+|+++|||+||++||....
T Consensus       153 ~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~  205 (286)
T cd07832         153 EPR-LYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGEN  205 (286)
T ss_pred             CCC-ccccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCC
Confidence            321 11345688999999998654 46899999999999999999988886543

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=100.00  E-value=2.4e-37  Score=275.27  Aligned_cols=202  Identities=16%  Similarity=0.257  Sum_probs=172.5

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeec
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYG  149 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  149 (338)
                      +|+..+.||.|++|.||+|.+  ++..|++|.+...........+.+|+.++++++|+||+++++++.+.+..++||||+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   80 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEYM   80 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEecC
Confidence            578889999999999999999  788999999876544434466788999999999999999999999999999999999


Q ss_pred             CCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCC
Q 038823          150 EYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGE  229 (338)
Q Consensus       150 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~  229 (338)
                      + ++|.+++......  ..+++..+..++.|++.||.|||   +.+++|+||+|+||++++++.++|+|||.+.......
T Consensus        81 ~-~~l~~~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~  154 (284)
T cd07836          81 D-KDLKKYMDTHGVR--GALDPNTVKSFTYQLLKGIAFCH---ENRVLHRDLKPQNLLINKRGELKLADFGLARAFGIPV  154 (284)
T ss_pred             C-ccHHHHHHhcCCC--CCcCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEECCCCcEEEeecchhhhhcCCc
Confidence            9 5898888654421  26899999999999999999999   8999999999999999999999999999987654322


Q ss_pred             ceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          230 THIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       230 ~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ..  .....++..|+|||.+.+. .++.++|+||||+++|+|++|+.||....
T Consensus       155 ~~--~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~  205 (284)
T cd07836         155 NT--FSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTN  205 (284)
T ss_pred             cc--cccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            11  1334578899999988654 47899999999999999999999997644

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=100.00  E-value=4.3e-37  Score=274.18  Aligned_cols=202  Identities=19%  Similarity=0.241  Sum_probs=177.0

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      ..++.|+..+.||+|++|.||+|.+  ++..+++|.+.....  ..+.+.+|+.++++++|+|++++++++...+..++|
T Consensus        16 ~~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv   93 (286)
T cd06614          16 DPRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ--NKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVV   93 (286)
T ss_pred             CccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch--hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEE
Confidence            4566788889999999999999999  588999999875533  456788999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      +||+++++|.+++.....    .+++..+..++.+++.||.|||   ..+++|+||+|+||+++.++.++|+|||.+...
T Consensus        94 ~e~~~~~~L~~~l~~~~~----~l~~~~~~~i~~~i~~~L~~lH---~~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~  166 (286)
T cd06614          94 MEYMDGGSLTDIITQNFV----RMNEPQIAYVCREVLQGLEYLH---SQNVIHRDIKSDNILLSKDGSVKLADFGFAAQL  166 (286)
T ss_pred             EeccCCCcHHHHHHHhcc----CCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCChhhEEEcCCCCEEECccchhhhh
Confidence            999999999999987642    6999999999999999999999   899999999999999999999999999987655


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ......  .....++..|+|||.+.+..++.++|+||||+++|+|++|+.||...
T Consensus       167 ~~~~~~--~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~  219 (286)
T cd06614         167 TKEKSK--RNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLRE  219 (286)
T ss_pred             ccchhh--hccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCC
Confidence            433211  12334778999999998888999999999999999999999998743

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=100.00  E-value=2.7e-37  Score=273.38  Aligned_cols=205  Identities=18%  Similarity=0.252  Sum_probs=168.2

Q ss_pred             CCcCCccccCCCceEEEEEE-----CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCC------
Q 038823           73 YDERKFIKQDSTYKLYKGFW-----QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETP------  140 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~-----~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~------  140 (338)
                      |.+.+.||+|+||.||+|.+     ++..||+|.+.... .....+.+.+|++++++++||||+++++++....      
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   80 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLP   80 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCccc
Confidence            56678999999999999986     35789999987543 3445677899999999999999999999886532      


Q ss_pred             cceEEEeecCCCCHHHhhhcCCC-CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecC
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQ-PHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDF  219 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~-~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Df  219 (338)
                      ..++++||+.+|+|.+++..... .....+++..+.+++.|++.||.|||   +.+|+|+||||+||+++.++.+||+||
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~nili~~~~~~kl~df  157 (273)
T cd05074          81 IPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLS---SKNFIHRDLAARNCMLNENMTVCVADF  157 (273)
T ss_pred             ceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCEeecccchhhEEEcCCCCEEECcc
Confidence            24789999999999988753221 11125789999999999999999999   899999999999999999999999999


Q ss_pred             CCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          220 SESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       220 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      |.++...............++..|++||.+....++.++||||||+++|+|++ |++||...
T Consensus       158 g~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~  219 (273)
T cd05074         158 GLSKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGV  219 (273)
T ss_pred             cccccccCCcceecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCC
Confidence            99887654332222233345678999999988889999999999999999999 88998754

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-39  Score=312.00  Aligned_cols=220  Identities=16%  Similarity=0.154  Sum_probs=191.9

Q ss_pred             CHHHHHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeee
Q 038823           62 SAKELEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCL  137 (338)
Q Consensus        62 ~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~  137 (338)
                      ...++....++|.+.++||+|+||.|..++.  +++.+|.|++++..  .......|..|-.+|..-+.+-|+++...|.
T Consensus        66 ~v~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQ  145 (1317)
T KOG0612|consen   66 KVKELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQ  145 (1317)
T ss_pred             HHHHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhc
Confidence            3456777788999999999999999999998  78899999998743  2334567899999999999999999999999


Q ss_pred             cCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEe
Q 038823          138 ETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLF  217 (338)
Q Consensus       138 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~  217 (338)
                      +...+|+|||||+||+|..++.+..     .+++..+..++.+|+.||.-||   +.|+|||||||.|||+|..|++||+
T Consensus       146 D~~~LYlVMdY~pGGDlltLlSk~~-----~~pE~~ArFY~aEiVlAldslH---~mgyVHRDiKPDNvLld~~GHikLA  217 (1317)
T KOG0612|consen  146 DERYLYLVMDYMPGGDLLTLLSKFD-----RLPEDWARFYTAEIVLALDSLH---SMGYVHRDIKPDNVLLDKSGHIKLA  217 (1317)
T ss_pred             CccceEEEEecccCchHHHHHhhcC-----CChHHHHHHHHHHHHHHHHHHH---hccceeccCCcceeEecccCcEeec
Confidence            9999999999999999999998875     5999999999999999999999   9999999999999999999999999


Q ss_pred             cCCCCcccCCCCceeeeecccccCCccccccccc-----CCCCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHH
Q 038823          218 DFSESISIPEGETHIITRSRFGAWTYSAPEYKRG-----GVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLI  290 (338)
Q Consensus       218 Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~  290 (338)
                      |||.+..+..+.+ ..+...+|||.|++||++..     +.|+..+|+||+||++|||+.|..||....-.+++..++
T Consensus       218 DFGsClkm~~dG~-V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYadslveTY~KIm  294 (1317)
T KOG0612|consen  218 DFGSCLKMDADGT-VRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYADSLVETYGKIM  294 (1317)
T ss_pred             cchhHHhcCCCCc-EEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchHHHHHHHHHHHh
Confidence            9999888765443 33478899999999999853     468999999999999999999999998755444444443

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=100.00  E-value=8.3e-37  Score=276.48  Aligned_cols=195  Identities=22%  Similarity=0.288  Sum_probs=168.8

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      .|+..+.||+|+||.||+|.+  ++..+++|.+....  .......+.+|+.++++++|+|++++++++.+++..++|||
T Consensus        26 ~f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  105 (317)
T cd06635          26 LFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVME  105 (317)
T ss_pred             hhhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEe
Confidence            377788999999999999998  77899999986432  23345678899999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |++ |+|.+.+.....    ++++..+..++.+++.||.|||   +.+++|+||+|+||+++.++.++|+|||++.....
T Consensus       106 ~~~-g~l~~~~~~~~~----~l~~~~~~~i~~~i~~~l~~lH---~~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~  177 (317)
T cd06635         106 YCL-GSASDLLEVHKK----PLQEVEIAAITHGALQGLAYLH---SHNMIHRDIKAGNILLTEPGQVKLADFGSASIASP  177 (317)
T ss_pred             CCC-CCHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcccEEECCCCCEEEecCCCccccCC
Confidence            998 588887765443    6899999999999999999999   89999999999999999999999999998876543


Q ss_pred             CCceeeeecccccCCcccccccc---cCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKR---GGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .      ....++..|+|||++.   .+.++.++|||||||++|||++|+.||...
T Consensus       178 ~------~~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~  227 (317)
T cd06635         178 A------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM  227 (317)
T ss_pred             c------ccccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCc
Confidence            2      3345788999999874   456899999999999999999999998753

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=100.00  E-value=5.7e-37  Score=272.59  Aligned_cols=192  Identities=15%  Similarity=0.191  Sum_probs=160.4

Q ss_pred             ccccCCCceEEEEEE--CCeEEEEEEeCcCCC--chHHHHHHHHHHHHh---ccCCcceeeeeeeeecCCcceEEEeecC
Q 038823           78 FIKQDSTYKLYKGFW--QERLISVMKYNESYS--DSACKFSINNIVYAA---QMDHKHILKLIGCCLETPIPILVFEYGE  150 (338)
Q Consensus        78 ~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~--~~~~~~~~~e~~~l~---~l~h~niv~l~~~~~~~~~~~lv~e~~~  150 (338)
                      +||+|+||.||++..  +++.+|+|.+.....  ......+.+|..+++   ..+|+||+.+++++...+..++||||++
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMN   80 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCC
Confidence            489999999999998  678999998865432  122233445544443   3469999999999999999999999999


Q ss_pred             CCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCc
Q 038823          151 YTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGET  230 (338)
Q Consensus       151 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~  230 (338)
                      +++|.+++....     .+++..+..++.|++.||.|||   +.+|+|+||||+||++++++.++|+|||++........
T Consensus        81 ~~~L~~~i~~~~-----~l~~~~~~~i~~qi~~al~~lH---~~~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~~  152 (279)
T cd05633          81 GGDLHYHLSQHG-----VFSEKEMRFYATEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKP  152 (279)
T ss_pred             CCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCcCCCCCCHHHEEECCCCCEEEccCCcceeccccCc
Confidence            999999987654     5999999999999999999999   89999999999999999999999999999875543221


Q ss_pred             eeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          231 HIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       231 ~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                          ....|+..|+|||.+.+ ..++.++|+|||||++|+|++|+.||....
T Consensus       153 ----~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~  200 (279)
T cd05633         153 ----HASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHK  200 (279)
T ss_pred             ----cCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCC
Confidence                33468999999999864 458999999999999999999999997543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=100.00  E-value=7.6e-37  Score=269.02  Aligned_cols=192  Identities=18%  Similarity=0.180  Sum_probs=170.0

Q ss_pred             cccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCCCH
Q 038823           79 IKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTL  154 (338)
Q Consensus        79 lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL  154 (338)
                      ||.|++|.||+|..  +++.+++|.+....  .....+.+.+|+.+++.++|+||+++++++.+++..++|+||+++++|
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGEL   80 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcH
Confidence            69999999999999  48899999987543  223457789999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCceeee
Q 038823          155 RDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIIT  234 (338)
Q Consensus       155 ~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~  234 (338)
                      .+++.+..     .+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||.+........   .
T Consensus        81 ~~~l~~~~-----~l~~~~~~~~~~~i~~~l~~lH---~~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~~---~  149 (262)
T cd05572          81 WTILRDRG-----LFDEYTARFYIACVVLAFEYLH---NRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQK---T  149 (262)
T ss_pred             HHHHhhcC-----CCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCCHHHEEEcCCCCEEEeeCCcccccCcccc---c
Confidence            99997653     5899999999999999999999   89999999999999999999999999999887655421   1


Q ss_pred             ecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          235 RSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       235 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ....++..|+|||.+.+..++.++|+||||+++|+|++|..||....
T Consensus       150 ~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  196 (262)
T cd05572         150 WTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDD  196 (262)
T ss_pred             ccccCCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCC
Confidence            34467889999999988889999999999999999999999997543

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=100.00  E-value=3e-37  Score=274.01  Aligned_cols=194  Identities=17%  Similarity=0.247  Sum_probs=168.1

Q ss_pred             cccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCCCH
Q 038823           79 IKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTL  154 (338)
Q Consensus        79 lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL  154 (338)
                      ||+|+||+||++..  ++..+++|.+....  .......+.+|+.++++++||||+++++++...+..++||||+++++|
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDL   80 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcH
Confidence            69999999999988  68899999986532  122345677899999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCceeee
Q 038823          155 RDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIIT  234 (338)
Q Consensus       155 ~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~  234 (338)
                      .+++.....   ..+++..+..++.|++.||.|||   ..+++|+||+|+||++++++.++|+|||.+.........   
T Consensus        81 ~~~l~~~~~---~~~~~~~~~~~~~ql~~~l~~lH---~~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~---  151 (277)
T cd05577          81 KYHIYNVGE---PGFPEARAIFYAAQIICGLEHLH---QRRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKKI---  151 (277)
T ss_pred             HHHHHHcCc---CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCCCEEEccCcchhhhccCCcc---
Confidence            999876543   25899999999999999999999   899999999999999999999999999998765432211   


Q ss_pred             ecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          235 RSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       235 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ....++..|+|||++.+..++.++|+||||+++|+|++|+.||....
T Consensus       152 ~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  198 (277)
T cd05577         152 KGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRK  198 (277)
T ss_pred             ccccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCc
Confidence            34467889999999988889999999999999999999999997543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.9e-37  Score=273.00  Aligned_cols=205  Identities=18%  Similarity=0.204  Sum_probs=172.4

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCC----
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCCLETP----  140 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~----  140 (338)
                      .++++|++.+.||+|++|.||+|..  +++.+++|.+.....  ..+.+.+|+.+++++ .|+||+++++++....    
T Consensus         3 ~~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~   80 (275)
T cd06608           3 DPTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIED--EEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGN   80 (275)
T ss_pred             CchhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCch--hHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCc
Confidence            4678899999999999999999999  678899999875532  336788999999999 6999999999997654    


Q ss_pred             --cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEec
Q 038823          141 --IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFD  218 (338)
Q Consensus       141 --~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~D  218 (338)
                        ..++||||+++++|.+++...... ...+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|
T Consensus        81 ~~~~~lv~e~~~~~~L~~~~~~~~~~-~~~~~~~~~~~~~~ql~~al~~lH---~~~i~H~~l~p~ni~~~~~~~~~l~d  156 (275)
T cd06608          81 DDQLWLVMELCGGGSVTDLVKGLRKK-GKRLKEEWIAYILRETLRGLAYLH---ENKVIHRDIKGQNILLTKNAEVKLVD  156 (275)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHHHEEEccCCeEEECC
Confidence              489999999999999988653210 126899999999999999999999   99999999999999999999999999


Q ss_pred             CCCCcccCCCCceeeeecccccCCccccccccc-----CCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          219 FSESISIPEGETHIITRSRFGAWTYSAPEYKRG-----GVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       219 fg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ||.+.........  .....|+..|+|||.+..     ..++.++||||||+++|+|+||+.||...
T Consensus       157 ~~~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  221 (275)
T cd06608         157 FGVSAQLDSTLGR--RNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDM  221 (275)
T ss_pred             Cccceecccchhh--hcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCcccc
Confidence            9998765433221  134558889999998753     34778999999999999999999999743

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=100.00  E-value=2e-38  Score=264.41  Aligned_cols=201  Identities=19%  Similarity=0.237  Sum_probs=176.2

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-CcceeeeeeeeecCCcceEEEe
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      ++.+....||.|.-|.|++++.  +|...|||.+....+..+.++++..+.++.+-+ +|+||+.+|||..+...++.||
T Consensus        92 ndl~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMe  171 (391)
T KOG0983|consen   92 NDLENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICME  171 (391)
T ss_pred             HHhhhHHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHH
Confidence            4445567899999999999999  789999999998888888889999999887765 9999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      .|. .-++.++.+-..    ++++..+-++...+.+||.||-.  +.+|+|||+||+|||+|+.|++||+|||.+..+.+
T Consensus       172 lMs-~C~ekLlkrik~----piPE~ilGk~tva~v~AL~YLKe--KH~viHRDvKPSNILlDe~GniKlCDFGIsGrlvd  244 (391)
T KOG0983|consen  172 LMS-TCAEKLLKRIKG----PIPERILGKMTVAIVKALYYLKE--KHGVIHRDVKPSNILLDERGNIKLCDFGISGRLVD  244 (391)
T ss_pred             HHH-HHHHHHHHHhcC----CchHHhhhhhHHHHHHHHHHHHH--hcceeecccCccceEEccCCCEEeecccccceeec
Confidence            987 566667766554    79999999999999999999986  78999999999999999999999999999987766


Q ss_pred             CCceeeeecccccCCccccccccc---CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRG---GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ...+   +...|.+.|||||.+.-   ..|+..+||||||++++||+||+.||...+
T Consensus       245 SkAh---trsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~  298 (391)
T KOG0983|consen  245 SKAH---TRSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCK  298 (391)
T ss_pred             cccc---ccccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCC
Confidence            6554   55679999999998853   459999999999999999999999998643

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9.3e-39  Score=272.29  Aligned_cols=203  Identities=17%  Similarity=0.164  Sum_probs=183.5

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      -++|...++||+|.||.|-+++-  +++.+|+|++++..  ......+-+.|-++|+..+||.+..|...|+..+.+++|
T Consensus       167 m~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCFV  246 (516)
T KOG0690|consen  167 MEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCFV  246 (516)
T ss_pred             cchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEEE
Confidence            47899999999999999999988  88999999998775  455667788999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||..||.|+-+|.+..     .+++.....+..+|+.||.|||   +.+||.||||.+|+++|.+|++||+|||+++..
T Consensus       247 MeyanGGeLf~HLsrer-----~FsE~RtRFYGaEIvsAL~YLH---s~~ivYRDlKLENLlLDkDGHIKitDFGLCKE~  318 (516)
T KOG0690|consen  247 MEYANGGELFFHLSRER-----VFSEDRTRFYGAEIVSALGYLH---SRNIVYRDLKLENLLLDKDGHIKITDFGLCKEE  318 (516)
T ss_pred             EEEccCceEeeehhhhh-----cccchhhhhhhHHHHHHhhhhh---hCCeeeeechhhhheeccCCceEeeecccchhc
Confidence            99999999999998764     6999999999999999999999   999999999999999999999999999999765


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      .....  .+....||+.|+|||++.+..|..++|+|.+||++|||++|+.||.....
T Consensus       319 I~~g~--t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh  373 (516)
T KOG0690|consen  319 IKYGD--TTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDH  373 (516)
T ss_pred             ccccc--eeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccccch
Confidence            43222  22677899999999999999999999999999999999999999986443

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-38  Score=293.17  Aligned_cols=238  Identities=20%  Similarity=0.313  Sum_probs=197.6

Q ss_pred             CCcCCccccCCCceEEEEEE---CC--eEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           73 YDERKFIKQDSTYKLYKGFW---QE--RLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~---~~--~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      ....++||+|.||+|++|.|   +|  -.||||.+....-......|++|+.+|.+|+|+|+++|||...+ ....+|||
T Consensus       112 i~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~-qp~mMV~E  190 (1039)
T KOG0199|consen  112 IKLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLD-QPAMMVFE  190 (1039)
T ss_pred             HHHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeecc-chhhHHhh
Confidence            34457899999999999999   33  35899999877544467899999999999999999999999987 67899999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      +++.|||.+.|.+...   ..|.......++.|||.||.||.   .++.|||||-..|+|+-..-.+||+|||+.+..+.
T Consensus       191 LaplGSLldrLrka~~---~~llv~~Lcdya~QiA~aM~YLe---skrlvHRDLAARNlllasprtVKI~DFGLmRaLg~  264 (1039)
T KOG0199|consen  191 LAPLGSLLDRLRKAKK---AILLVSRLCDYAMQIAKAMQYLE---SKRLVHRDLAARNLLLASPRTVKICDFGLMRALGE  264 (1039)
T ss_pred             hcccchHHHHHhhccc---cceeHHHHHHHHHHHHHHHHHHh---hhhhhhhhhhhhhheecccceeeeecccceeccCC
Confidence            9999999999988332   36888999999999999999999   99999999999999999999999999999999887


Q ss_pred             CCce-eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccCCcccccHHHHHHHHHhcCccccc
Q 038823          228 GETH-IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEI  305 (338)
Q Consensus       228 ~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  305 (338)
                      ++.. .+.....-.+.|+|||.+....++.++|||+|||++|||+| |..||...+.        ..+...+.++     
T Consensus       265 ned~Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g--------~qIL~~iD~~-----  331 (1039)
T KOG0199|consen  265 NEDMYVMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRG--------IQILKNIDAG-----  331 (1039)
T ss_pred             CCcceEecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCH--------HHHHHhcccc-----
Confidence            6554 34455556789999999999999999999999999999999 8889987654        1112222111     


Q ss_pred             cccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          306 ADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       306 ~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                        .+|.      ....|.+.+..+++.||..+|
T Consensus       332 --erLp------RPk~csedIY~imk~cWah~p  356 (1039)
T KOG0199|consen  332 --ERLP------RPKYCSEDIYQIMKNCWAHNP  356 (1039)
T ss_pred             --ccCC------CCCCChHHHHHHHHHhccCCc
Confidence              1111      123477789999999999876

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=100.00  E-value=6.3e-37  Score=274.65  Aligned_cols=200  Identities=20%  Similarity=0.214  Sum_probs=170.7

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCc----hHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSD----SACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      +|+..+.||+|++|.||+|.+  +++.|++|.+......    .....+..|+.++++++|+||+++++++.+.+..++|
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   80 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLV   80 (298)
T ss_pred             CceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEE
Confidence            477788999999999999998  6889999999755322    2235567899999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||+ +++|.+++.....    .+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++...
T Consensus        81 ~e~~-~~~L~~~i~~~~~----~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~  152 (298)
T cd07841          81 FEFM-ETDLEKVIKDKSI----VLTPADIKSYMLMTLRGLEYLH---SNWILHRDLKPNNLLIASDGVLKLADFGLARSF  152 (298)
T ss_pred             Eccc-CCCHHHHHhccCC----CCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCChhhEEEcCCCCEEEccceeeeec
Confidence            9999 8999999976542    5899999999999999999999   899999999999999999999999999999776


Q ss_pred             CCCCceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      .......  ....++..|+|||.+.+ ..++.++|+|||||++|||++|.+||....
T Consensus       153 ~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~  207 (298)
T cd07841         153 GSPNRKM--THQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDS  207 (298)
T ss_pred             cCCCccc--cccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCc
Confidence            5432211  23356788999998855 457899999999999999999988887543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1e-36  Score=268.63  Aligned_cols=202  Identities=19%  Similarity=0.225  Sum_probs=171.9

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC----CchHHHHHHHHHHHHhccCCcceeeeeeeeecC--Ccc
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY----SDSACKFSINNIVYAAQMDHKHILKLIGCCLET--PIP  142 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~  142 (338)
                      .+|.+.+.||+|+||.||+|.+  ++..+++|.+....    .......+.+|+.++++++|+||+++++++.+.  ..+
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKL   81 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEE
Confidence            5789999999999999999998  78899999875321    233456788999999999999999999998764  457


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSES  222 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a  222 (338)
                      ++|+||+++++|.+++....     .+++.....++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||++
T Consensus        82 ~~v~e~~~~~~L~~~~~~~~-----~l~~~~~~~~~~~i~~al~~LH---~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~  153 (264)
T cd06653          82 SIFVEYMPGGSIKDQLKAYG-----ALTENVTRRYTRQILQGVSYLH---SNMIVHRDIKGANILRDSAGNVKLGDFGAS  153 (264)
T ss_pred             EEEEEeCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCEEECccccc
Confidence            89999999999999987653     5889999999999999999999   899999999999999999999999999998


Q ss_pred             cccCCCCce-eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          223 ISIPEGETH-IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       223 ~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ......... .......++..|+|||.+.+..++.++|+||||+++|+|++|+.||...
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  212 (264)
T cd06653         154 KRIQTICMSGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEY  212 (264)
T ss_pred             cccccccccCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCcc
Confidence            765321110 1112345889999999998888999999999999999999999999743

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=100.00  E-value=9.2e-37  Score=268.22  Aligned_cols=206  Identities=15%  Similarity=0.173  Sum_probs=175.0

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeec--CCcceEEE
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLE--TPIPILVF  146 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~~lv~  146 (338)
                      +|++.+.||.|+||.||++..  ++..+++|.+.... .....+.+.+|+.++++++|+||+++++++..  +...+++|
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVM   80 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEe
Confidence            477889999999999999998  77889999887542 34455678899999999999999999998764  44679999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC--CCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGF--PRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~--~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ||+++++|.+++...... ...+++..++.++.|++.||.|||..+  +.+++|+||+|+||+++.++.+||+|||++..
T Consensus        81 e~~~~~~L~~~l~~~~~~-~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~~  159 (265)
T cd08217          81 EYCEGGDLAQLIQKCKKE-RKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKI  159 (265)
T ss_pred             hhccCCCHHHHHHHHhhc-ccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEeccccccc
Confidence            999999999998764211 126899999999999999999999554  67899999999999999999999999999887


Q ss_pred             cCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          225 IPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       225 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ........  ....++..|+|||.+.+..++.++|+||||+++|+|++|+.||...
T Consensus       160 ~~~~~~~~--~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  213 (265)
T cd08217         160 LGHDSSFA--KTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTAR  213 (265)
T ss_pred             ccCCcccc--cccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCc
Confidence            76543211  3446899999999998888999999999999999999999999753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=1.6e-37  Score=272.99  Aligned_cols=189  Identities=21%  Similarity=0.295  Sum_probs=159.3

Q ss_pred             CccccCCCceEEEEEE--CC-------eEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           77 KFIKQDSTYKLYKGFW--QE-------RLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~--~~-------~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      +.||+|+||.||+|..  .+       ..+++|.+... .....+.+.+|+.+++.++||||+++++++..++..++|||
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   79 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKS-HRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQE   79 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcch-hHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEe
Confidence            3689999999999987  22       23777777544 33344678899999999999999999999999899999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCc--------eEEecC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENV--------AKLFDF  219 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~--------~kl~Df  219 (338)
                      |+++|+|.+++.....    .+++..++.++.||+.||.|||   +.+|+||||||+||+++.++.        ++++||
T Consensus        80 ~~~~g~L~~~l~~~~~----~~~~~~~~~~~~qi~~~l~~lH---~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~  152 (258)
T cd05078          80 YVKFGSLDTYLKKNKN----LINISWKLEVAKQLAWALHFLE---DKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDP  152 (258)
T ss_pred             cCCCCcHHHHHhcCCC----CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCccceEEEecccccccCCCceEEeccc
Confidence            9999999999976543    6899999999999999999999   999999999999999987765        699999


Q ss_pred             CCCcccCCCCceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCC-CCcCC
Q 038823          220 SESISIPEGETHIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQ-STRDL  279 (338)
Q Consensus       220 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~-~p~~~  279 (338)
                      |.+......      ....++..|+|||++.+. .++.++||||||+++|||++|. .||..
T Consensus       153 g~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~  208 (258)
T cd05078         153 GISITVLPK------EILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSA  208 (258)
T ss_pred             ccccccCCc------hhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhh
Confidence            988655432      234578899999998764 4899999999999999999995 56553

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=100.00  E-value=2.4e-37  Score=276.78  Aligned_cols=202  Identities=18%  Similarity=0.235  Sum_probs=171.7

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC-chHHHHHHHHHHHHhccCCcceeeeeeeeecC--CcceEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS-DSACKFSINNIVYAAQMDHKHILKLIGCCLET--PIPILV  145 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~lv  145 (338)
                      ++|+..+.||+|+||.||+|.+  ++..+++|.+..... ......+.+|+.++.+++||||+++++++...  +..++|
T Consensus         5 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv   84 (293)
T cd07843           5 DEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMV   84 (293)
T ss_pred             hhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEE
Confidence            4688889999999999999999  678899999875432 22234567899999999999999999998877  889999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||++ ++|.+++.....    .+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.+||+|||.+...
T Consensus        85 ~e~~~-~~L~~~~~~~~~----~l~~~~~~~i~~qi~~aL~~LH---~~~i~H~dl~p~nili~~~~~~~l~d~g~~~~~  156 (293)
T cd07843          85 MEYVE-HDLKSLMETMKQ----PFLQSEVKCLMLQLLSGVAHLH---DNWILHRDLKTSNLLLNNRGILKICDFGLAREY  156 (293)
T ss_pred             ehhcC-cCHHHHHHhccC----CCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHHHEEECCCCcEEEeecCceeec
Confidence            99998 599998876543    6899999999999999999999   899999999999999999999999999998876


Q ss_pred             CCCCceeeeecccccCCcccccccccCC-CCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGV-FNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ......  .....++..|+|||.+.+.. ++.++|+||||+++|+|++|+.||.....
T Consensus       157 ~~~~~~--~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~~  212 (293)
T cd07843         157 GSPLKP--YTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSE  212 (293)
T ss_pred             cCCccc--cccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCCCh
Confidence            554211  13345788999999987544 68999999999999999999999976443

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=100.00  E-value=9.8e-37  Score=275.81  Aligned_cols=198  Identities=17%  Similarity=0.180  Sum_probs=160.3

Q ss_pred             CCccccCCCceEEEEEE----CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeec--CCcceEEEeec
Q 038823           76 RKFIKQDSTYKLYKGFW----QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLE--TPIPILVFEYG  149 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~----~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~~lv~e~~  149 (338)
                      ...||+|+||.||+|..    ++..+|+|.+.....   ...+.+|+.++++++||||+++++++..  +...++||||+
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~---~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~   82 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGI---SMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYA   82 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCCCC---cHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeee
Confidence            46799999999999997    346799998865421   2457789999999999999999999854  45689999998


Q ss_pred             CCCCHHHhhhcCCC----CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceee----CCCCceEEecCCC
Q 038823          150 EYTTLRDRIFGAPQ----PHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILF----NEENVAKLFDFSE  221 (338)
Q Consensus       150 ~~gsL~~~l~~~~~----~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill----~~~~~~kl~Dfg~  221 (338)
                      + ++|.+++.....    .....+++..+..++.|++.||.|||   +.+|+||||||+||++    +.++.+||+|||+
T Consensus        83 ~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~  158 (317)
T cd07867          83 E-HDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVKIADMGF  158 (317)
T ss_pred             C-CcHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHH---hCCEEcCCCCHHHEEEccCCCCCCcEEEeeccc
Confidence            8 588887753211    11125889999999999999999999   8999999999999999    5667899999999


Q ss_pred             CcccCCCCce-eeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          222 SISIPEGETH-IITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       222 a~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ++........ .......||..|+|||.+.+. .++.++|||||||++|||+||++||...
T Consensus       159 a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~~  219 (317)
T cd07867         159 ARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR  219 (317)
T ss_pred             eeccCCCcccccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCcccc
Confidence            9876543221 111345689999999998764 5899999999999999999999999743

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=100.00  E-value=3.9e-37  Score=274.03  Aligned_cols=200  Identities=19%  Similarity=0.248  Sum_probs=170.5

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC-chHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS-DSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      +|+..+.||.|++|.||+|..  ++..|++|.+..... ......+.+|++++++++||||+++++++.+.+..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF   80 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeec
Confidence            578889999999999999998  788999998875432 22335788999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      +. ++|.+++.....   ..+++..+..++.|++.||+|||   ..+++|+||+|+||+++.++.+||+|||++......
T Consensus        81 ~~-~~l~~~~~~~~~---~~l~~~~~~~~~~~i~~~l~~lh---~~~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~  153 (284)
T cd07860          81 LH-QDLKKFMDASPL---SGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP  153 (284)
T ss_pred             cc-cCHHHHHHhCCC---CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEEeeccchhhcccC
Confidence            97 689988866432   26899999999999999999999   899999999999999999999999999998765433


Q ss_pred             CceeeeecccccCCcccccccccCC-CCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGV-FNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ...  .....++..|+|||.+.+.. ++.++||||||+++|+|+||+.||...
T Consensus       154 ~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~  204 (284)
T cd07860         154 VRT--YTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGD  204 (284)
T ss_pred             ccc--cccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence            221  13335688999999886644 688999999999999999999999753

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=100.00  E-value=2.9e-37  Score=283.57  Aligned_cols=199  Identities=17%  Similarity=0.198  Sum_probs=170.8

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecC------
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLET------  139 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~------  139 (338)
                      ..++|+..+.||+|+||.||+|..  ++..||+|.+.... .......+.+|+.++++++|+||+++++++...      
T Consensus        14 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   93 (353)
T cd07850          14 VLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEF   93 (353)
T ss_pred             hhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCcccc
Confidence            457799999999999999999998  78899999987543 333446678899999999999999999988643      


Q ss_pred             CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecC
Q 038823          140 PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDF  219 (338)
Q Consensus       140 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Df  219 (338)
                      ...++||||+. ++|.+.+..       .++...+..++.|++.||.|||   ..+++||||||+||+++.++.+||+||
T Consensus        94 ~~~~lv~e~~~-~~l~~~~~~-------~l~~~~~~~~~~ql~~aL~~LH---~~gi~H~dlkp~Nil~~~~~~~kL~Df  162 (353)
T cd07850          94 QDVYLVMELMD-ANLCQVIQM-------DLDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDF  162 (353)
T ss_pred             CcEEEEEeccC-CCHHHHHhh-------cCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCCCEEEccC
Confidence            34699999998 688888753       3788899999999999999999   899999999999999999999999999


Q ss_pred             CCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          220 SESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       220 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      |++........   .....++..|+|||.+.+..++.++|||||||++|+|++|+.||....
T Consensus       163 g~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~  221 (353)
T cd07850         163 GLARTAGTSFM---MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTD  221 (353)
T ss_pred             ccceeCCCCCC---CCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCCCC
Confidence            99987644322   133457889999999998899999999999999999999999997543

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=100.00  E-value=1.3e-36  Score=271.15  Aligned_cols=197  Identities=19%  Similarity=0.244  Sum_probs=171.2

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeec
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYG  149 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  149 (338)
                      .|...+.||+|++|.||++..  ++..+++|.+... .....+.+.+|+.+++.++|+||+++++++...+..++|+||+
T Consensus        20 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~-~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~   98 (285)
T cd06648          20 YLDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLR-KQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFL   98 (285)
T ss_pred             hhhcceEeccCCCeEEEEEEECCCCCEEEEEEEecc-chhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEecc
Confidence            355567999999999999987  7788999988644 3333466889999999999999999999999999999999999


Q ss_pred             CCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCC
Q 038823          150 EYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGE  229 (338)
Q Consensus       150 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~  229 (338)
                      ++++|.+++...      .+++..+..++.|++.||+|||   +.+++||||+|+||+++.++.++|+|||.+.......
T Consensus        99 ~~~~L~~~~~~~------~~~~~~~~~~~~ql~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~  169 (285)
T cd06648          99 EGGALTDIVTHT------RMNEEQIATVCLAVLKALSFLH---AQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEV  169 (285)
T ss_pred             CCCCHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCChhhEEEcCCCcEEEcccccchhhccCC
Confidence            999999998762      5889999999999999999999   8999999999999999999999999999877554322


Q ss_pred             ceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          230 THIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       230 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ..  .....|+..|+|||...+..++.++||||||+++|+|++|+.||...
T Consensus       170 ~~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~  218 (285)
T cd06648         170 PR--RKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNE  218 (285)
T ss_pred             cc--cccccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCC
Confidence            11  13345889999999998888999999999999999999999999753

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9.3e-39  Score=292.47  Aligned_cols=200  Identities=19%  Similarity=0.198  Sum_probs=174.0

Q ss_pred             CCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecC
Q 038823           73 YDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGE  150 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~  150 (338)
                      +.+..-||.|+||.||+|.+  .+-..|.|.+... +....+.|+-|+.+|..+.||+||+|++.|...+.+|+..|||.
T Consensus        34 WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetk-seEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC~  112 (1187)
T KOG0579|consen   34 WEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETK-SEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFCG  112 (1187)
T ss_pred             HHHHhhhcCccchhhhhhhcccchhhhhhhhhccc-chhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeecC
Confidence            44557799999999999999  3444566777655 66677899999999999999999999999999999999999999


Q ss_pred             CCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCc
Q 038823          151 YTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGET  230 (338)
Q Consensus       151 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~  230 (338)
                      ||.++.++-.-+.    +|++.++.-+++|++.||.|||   +.+|||||||+.|||+.-+|.++|+|||.+........
T Consensus       113 GGAVDaimlEL~r----~LtE~QIqvvc~q~ldALn~LH---s~~iIHRDLKAGNiL~TldGdirLADFGVSAKn~~t~q  185 (1187)
T KOG0579|consen  113 GGAVDAIMLELGR----VLTEDQIQVVCYQVLDALNWLH---SQNIIHRDLKAGNILLTLDGDIRLADFGVSAKNKSTRQ  185 (1187)
T ss_pred             CchHhHHHHHhcc----ccchHHHHHHHHHHHHHHHHHh---hcchhhhhccccceEEEecCcEeeecccccccchhHHh
Confidence            9999999888775    8999999999999999999999   99999999999999999999999999998865433211


Q ss_pred             eeeeecccccCCcccccccc-----cCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          231 HIITRSRFGAWTYSAPEYKR-----GGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       231 ~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                        ......||+.|||||+..     +.+|+.++||||||++|.||..+.+|....++
T Consensus       186 --kRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhelnp  240 (1187)
T KOG0579|consen  186 --KRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHELNP  240 (1187)
T ss_pred             --hhccccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCccccch
Confidence              125677999999999864     45799999999999999999999999876655

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=100.00  E-value=1.2e-36  Score=272.85  Aligned_cols=202  Identities=19%  Similarity=0.227  Sum_probs=170.0

Q ss_pred             HHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-CcceeeeeeeeecCCcce
Q 038823           67 EIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCLETPIPI  143 (338)
Q Consensus        67 ~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~  143 (338)
                      ...-++|++.+.||+|++|.||+|.+  +++.||+|.+...........+..|+.++.+.. |+||+++++++.+....+
T Consensus        11 ~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~   90 (296)
T cd06618          11 PADLNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVF   90 (296)
T ss_pred             cCCcchheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEE
Confidence            34456788899999999999999999  489999999976544444466777887776665 999999999999999999


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CCeeecCCCCCceeeCCCCceEEecCCCC
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFP-RPIVFGNLISLCILFNEENVAKLFDFSES  222 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~-~~iiH~dik~~Nill~~~~~~kl~Dfg~a  222 (338)
                      +||||+. ++|.+++.....    .+++..+..++.|++.||.|||   + .+|+|+||+|+||++++++.+||+|||++
T Consensus        91 ~v~e~~~-~~l~~l~~~~~~----~l~~~~~~~i~~~i~~~l~~lH---~~~~i~H~dl~p~nill~~~~~~kL~dfg~~  162 (296)
T cd06618          91 ICMELMS-TCLDKLLKRIQG----PIPEDILGKMTVAIVKALHYLK---EKHGVIHRDVKPSNILLDASGNVKLCDFGIS  162 (296)
T ss_pred             EEeeccC-cCHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHH---hhCCEecCCCcHHHEEEcCCCCEEECccccc
Confidence            9999987 588887766443    6899999999999999999999   6 59999999999999999999999999998


Q ss_pred             cccCCCCceeeeecccccCCcccccccccCC----CCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          223 ISIPEGETHIITRSRFGAWTYSAPEYKRGGV----FNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       223 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      .........   ....++..|+|||.+....    ++.++||||||+++|+|++|+.||..
T Consensus       163 ~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~  220 (296)
T cd06618         163 GRLVDSKAK---TRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKN  220 (296)
T ss_pred             hhccCCCcc---cCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCc
Confidence            765443222   2335788999999987553    78999999999999999999999974

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=100.00  E-value=2.9e-36  Score=262.78  Aligned_cols=198  Identities=21%  Similarity=0.291  Sum_probs=176.9

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeec
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYG  149 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  149 (338)
                      +|+..+.||+|++|.||++..  ++..+++|++..... .....+.+|+..+++++|+|++++++++...+..++++||+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~   79 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESK-EKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFC   79 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccch-hHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecC
Confidence            477789999999999999999  588899999976633 34578899999999999999999999999999999999999


Q ss_pred             CCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCC
Q 038823          150 EYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGE  229 (338)
Q Consensus       150 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~  229 (338)
                      ++++|.+++.....    .+++..+..++.+++.||.|||   ..+++|+||+|+||++++++.++|+|||.+.......
T Consensus        80 ~~~~L~~~~~~~~~----~~~~~~~~~i~~~i~~~l~~lh---~~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~  152 (253)
T cd05122          80 SGGSLKDLLKSTNQ----TLTESQIAYVCKELLKGLEYLH---SNGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTK  152 (253)
T ss_pred             CCCcHHHHHhhcCC----CCCHHHHHHHHHHHHHHHHHhh---cCCEecCCCCHHHEEEccCCeEEEeeccccccccccc
Confidence            99999999877642    6899999999999999999999   8999999999999999999999999999988776543


Q ss_pred             ceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          230 THIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       230 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .   .....++..|+|||.+....++.++|+||||+++|+|++|+.||...
T Consensus       153 ~---~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  200 (253)
T cd05122         153 A---RNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSEL  200 (253)
T ss_pred             c---ccceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence            2   14456888999999998888999999999999999999999999754

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=100.00  E-value=6.2e-37  Score=273.73  Aligned_cols=200  Identities=19%  Similarity=0.199  Sum_probs=170.3

Q ss_pred             CCCcCCccccCCCceEEEEEE-----CCeEEEEEEeCcCC---CchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcc
Q 038823           72 NYDERKFIKQDSTYKLYKGFW-----QERLISVMKYNESY---SDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIP  142 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~-----~~~~vaik~~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~  142 (338)
                      +|++.+.||+|+||.||++..     ++..||+|.+....   .....+.+.+|+.++.++ +|+||+++++++..+...
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKL   80 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeE
Confidence            477889999999999999987     57889999987532   122346678899999999 599999999999998899


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSES  222 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a  222 (338)
                      ++||||+++++|.+++....     .+++..+..++.|++.||.|||   +.+++||||+|+||+++.++.+||+|||++
T Consensus        81 ~lv~e~~~~~~L~~~l~~~~-----~l~~~~~~~~~~qi~~al~~lH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~  152 (290)
T cd05613          81 HLILDYINGGELFTHLSQRE-----RFKEQEVQIYSGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLS  152 (290)
T ss_pred             EEEEecCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeEECCCCCEEEeeCccc
Confidence            99999999999999997653     5889999999999999999999   899999999999999999999999999998


Q ss_pred             cccCCCCceeeeecccccCCcccccccccC--CCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          223 ISIPEGETHIITRSRFGAWTYSAPEYKRGG--VFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       223 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .......... .....|+..|+|||.+...  .++.++||||||+++|+|+||+.||...
T Consensus       153 ~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~  211 (290)
T cd05613         153 KEFHEDEVER-AYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVD  211 (290)
T ss_pred             eecccccccc-cccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcC
Confidence            7654432211 1334588899999998753  4788999999999999999999999753

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2e-36  Score=266.05  Aligned_cols=190  Identities=18%  Similarity=0.109  Sum_probs=162.2

Q ss_pred             CccccCCCceEEEEEE--CCeEEEEEEeCcCCC--chHHHHHHHHHHHH-hccCCcceeeeeeeeecCCcceEEEeecCC
Q 038823           77 KFIKQDSTYKLYKGFW--QERLISVMKYNESYS--DSACKFSINNIVYA-AQMDHKHILKLIGCCLETPIPILVFEYGEY  151 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~--~~~~~~~~~e~~~l-~~l~h~niv~l~~~~~~~~~~~lv~e~~~~  151 (338)
                      +.||+|+||.||+|..  +++.||+|.+.....  ......+..|..++ ...+|+|++++++++..++.+++|+||+++
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   81 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNG   81 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCC
Confidence            4689999999999998  788999999865421  22223344555444 455899999999999999999999999999


Q ss_pred             CCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCce
Q 038823          152 TTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH  231 (338)
Q Consensus       152 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~  231 (338)
                      ++|.+++....     .+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||++......   
T Consensus        82 ~~L~~~l~~~~-----~~~~~~~~~i~~qi~~aL~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~---  150 (260)
T cd05611          82 GDCASLIKTLG-----GLPEDWAKQYIAEVVLGVEDLH---QRGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLEN---  150 (260)
T ss_pred             CCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCcEEEeecccceecccc---
Confidence            99999997654     5899999999999999999999   899999999999999999999999999988764431   


Q ss_pred             eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          232 IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       232 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                         ....++..|+|||.+.+..++.++||||||+++|+|+||..||...
T Consensus       151 ---~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  196 (260)
T cd05611         151 ---KKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAE  196 (260)
T ss_pred             ---ccCCCCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCC
Confidence               3445788999999998888999999999999999999999999753

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=100.00  E-value=5.8e-37  Score=279.75  Aligned_cols=200  Identities=17%  Similarity=0.217  Sum_probs=169.3

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCC-----cc
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETP-----IP  142 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-----~~  142 (338)
                      +++|++.+.||+|+||.||+|..  +++.||+|.+...........+.+|+.++++++|+||+++++++...+     ..
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~   83 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDV   83 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceE
Confidence            46899999999999999999998  788999999875434445567889999999999999999999876543     57


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSES  222 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a  222 (338)
                      ++|+||++ ++|.+++...      .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++
T Consensus        84 ~lv~e~~~-~~l~~~~~~~------~l~~~~~~~i~~ql~~aL~~LH---~~~ivH~dlkp~Nill~~~~~~kl~dfg~~  153 (336)
T cd07849          84 YIVQELME-TDLYKLIKTQ------HLSNDHIQYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTNCDLKICDFGLA  153 (336)
T ss_pred             EEEehhcc-cCHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEECCCCCEEECcccce
Confidence            99999998 5888887543      5899999999999999999999   899999999999999999999999999998


Q ss_pred             cccCCCCcee-eeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          223 ISIPEGETHI-ITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       223 ~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      .......... ......|+..|+|||.+.+ ..++.++|||||||++|+|++|+.||..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~  212 (336)
T cd07849         154 RIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPG  212 (336)
T ss_pred             eeccccccccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence            7654332211 1123467899999998754 4589999999999999999999999975

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=100.00  E-value=1.3e-36  Score=272.08  Aligned_cols=205  Identities=16%  Similarity=0.183  Sum_probs=168.9

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC-chHHHHHHHHHHHHhccC-CcceeeeeeeeecCCc-----
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS-DSACKFSINNIVYAAQMD-HKHILKLIGCCLETPI-----  141 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~-----  141 (338)
                      ++|+..+.||+|+||.||+|.+  ++..|++|.+..... ......+.+|+.+++.+. |+||+++++++...+.     
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~   80 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPS   80 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCce
Confidence            4688899999999999999998  788999998865432 223356788999999995 6999999999887665     


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC-CCceEEecCC
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE-ENVAKLFDFS  220 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~-~~~~kl~Dfg  220 (338)
                      .++||||++ ++|.+++..........+++..+..++.||+.||.|||   +.+++||||+|+||+++. ++.+||+|||
T Consensus        81 ~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH---~~~i~H~dl~~~nil~~~~~~~~kl~dfg  156 (295)
T cd07837          81 LYLVFEYLD-SDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCH---KHGVMHRDLKPQNLLVDKQKGLLKIADLG  156 (295)
T ss_pred             EEEEeeccC-cCHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCChHHEEEecCCCeEEEeecc
Confidence            799999999 48988886543321236899999999999999999999   899999999999999998 8899999999


Q ss_pred             CCcccCCCCceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          221 ESISIPEGETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      .+.........  .....+++.|+|||++.+ ..++.++|+||||+++|+|++|..||....
T Consensus       157 ~~~~~~~~~~~--~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~  216 (295)
T cd07837         157 LGRAFSIPVKS--YTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDS  216 (295)
T ss_pred             cceecCCCccc--cCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            98765432211  123356788999998865 457999999999999999999999997643

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=100.00  E-value=2.5e-36  Score=266.79  Aligned_cols=197  Identities=18%  Similarity=0.157  Sum_probs=165.3

Q ss_pred             HHHHHhhcCCCcCCcc--ccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeeeec
Q 038823           64 KELEIATNNYDERKFI--KQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCCLE  138 (338)
Q Consensus        64 ~~~~~~~~~~~~~~~l--g~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~  138 (338)
                      .+.....++|++.+.+  |+|+||.||++..  ++..+++|.+.......      .|+.....+ +|+||+++++++..
T Consensus         7 ~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~------~e~~~~~~~~~h~~iv~~~~~~~~   80 (267)
T PHA03390          7 SELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNA------IEPMVHQLMKDNPNFIKLYYSVTT   80 (267)
T ss_pred             HHHHHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcch------hhHHHHHHhhcCCCEEEEEEEEec
Confidence            3444555677777776  9999999999998  77889999986542111      122222222 69999999999999


Q ss_pred             CCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC-ceEEe
Q 038823          139 TPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN-VAKLF  217 (338)
Q Consensus       139 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~-~~kl~  217 (338)
                      .+..++||||+++++|.+++....     .+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++ .++|+
T Consensus        81 ~~~~~iv~e~~~~~~L~~~l~~~~-----~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~~~l~  152 (267)
T PHA03390         81 LKGHVLIMDYIKDGDLFDLLKKEG-----KLSEAEVKKIIRQLVEALNDLH---KHNIIHNDIKLENVLYDRAKDRIYLC  152 (267)
T ss_pred             CCeeEEEEEcCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEEeCCCCeEEEe
Confidence            999999999999999999997653     6899999999999999999999   89999999999999999998 99999


Q ss_pred             cCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          218 DFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       218 Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      |||++......      ....++..|+|||++.+..++.++||||||+++|+|++|+.||...
T Consensus       153 dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~  209 (267)
T PHA03390        153 DYGLCKIIGTP------SCYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKED  209 (267)
T ss_pred             cCccceecCCC------ccCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence            99998766433      2345788999999999888999999999999999999999999843

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.6e-37  Score=284.68  Aligned_cols=205  Identities=21%  Similarity=0.215  Sum_probs=184.0

Q ss_pred             HHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcce
Q 038823           67 EIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        67 ~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      ..-...|.+.+.||+|.|+.|.+|+.  ++..||+|.+.+.. +....+.+.+|+++|+.++|||||+++.+......+|
T Consensus        52 ~~~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~ly  131 (596)
T KOG0586|consen   52 SNSVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLY  131 (596)
T ss_pred             cccccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeE
Confidence            34556789999999999999999998  89999999998775 3444566899999999999999999999999999999


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      +||||+.+|.+++++.+++.     ..+..+..++.|+.+|++|||   .+.|+|||||++||||+.+.++||+|||++.
T Consensus       132 lV~eya~~ge~~~yl~~~gr-----~~e~~ar~~F~q~vsaveYcH---~k~ivHrdLk~eNilL~~~mnikIaDfgfS~  203 (596)
T KOG0586|consen  132 LVMEYASGGELFDYLVKHGR-----MKEKEARAKFRQIVSAVEYCH---SKNIVHRDLKAENILLDENMNIKIADFGFST  203 (596)
T ss_pred             EEEEeccCchhHHHHHhccc-----chhhhhhhhhHHHHHHHHHHh---hcceeccccchhhcccccccceeeeccccce
Confidence            99999999999999998874     666888999999999999999   9999999999999999999999999999998


Q ss_pred             ccCCCCceeeeecccccCCcccccccccCCC-CccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYKRGGVF-NEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ........   ....|++.|.|||++.+..+ .+.+|+||+|+++|-|+.|..||+...-
T Consensus       204 ~~~~~~~l---qt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~l  260 (596)
T KOG0586|consen  204 FFDYGLML---QTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQNL  260 (596)
T ss_pred             eecccccc---cccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCccc
Confidence            88754332   66789999999999998775 5889999999999999999999996443

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=5.5e-39  Score=313.91  Aligned_cols=208  Identities=20%  Similarity=0.242  Sum_probs=177.4

Q ss_pred             HHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcce
Q 038823           67 EIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        67 ~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      ...+-++....+||.|.||.||.|.+  +|...|+|-++-.. .........+|..++..++|||+|++||+-.+++..+
T Consensus      1231 snV~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~ 1310 (1509)
T KOG4645|consen 1231 SNVTFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVY 1310 (1509)
T ss_pred             ccceeeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHH
Confidence            34455677788999999999999999  78888999876443 2344567789999999999999999999999999999


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      +.||||++|+|.+++....     -.++.....+..|++.|++|||   +.+||||||||+||+|+.+|.+|++|||.|.
T Consensus      1311 IFMEyC~~GsLa~ll~~gr-----i~dE~vt~vyt~qll~gla~LH---~~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ 1382 (1509)
T KOG4645|consen 1311 IFMEYCEGGSLASLLEHGR-----IEDEMVTRVYTKQLLEGLAYLH---EHGIVHRDIKPANILLDFNGLIKYGDFGSAV 1382 (1509)
T ss_pred             HHHHHhccCcHHHHHHhcc-----hhhhhHHHHHHHHHHHHHHHHH---hcCceecCCCccceeeecCCcEEeeccccee
Confidence            9999999999999997654     3677777788999999999999   9999999999999999999999999999998


Q ss_pred             ccCCCCce--eeeecccccCCcccccccccCC---CCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          224 SIPEGETH--IITRSRFGAWTYSAPEYKRGGV---FNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       224 ~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      .+......  .......||+.|||||++.+..   ..-+.||||+||++.||+||+.||.....
T Consensus      1383 ki~~~~~~~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dn 1446 (1509)
T KOG4645|consen 1383 KIKNNAQTMPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDN 1446 (1509)
T ss_pred             EecCchhcCCHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhccc
Confidence            87655211  1124567999999999997644   55789999999999999999999986544

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=100.00  E-value=9.5e-37  Score=271.56  Aligned_cols=200  Identities=20%  Similarity=0.248  Sum_probs=170.8

Q ss_pred             CCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecC--CcceEEEe
Q 038823           73 YDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLET--PIPILVFE  147 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~lv~e  147 (338)
                      |++.+.||.|++|.||+|.+  ++..+++|.+.... .......+.+|+.++++++|+|++++++++...  +..++|+|
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e   80 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFE   80 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEec
Confidence            56778899999999999998  57899999998653 233345688999999999999999999999887  78999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |++ ++|.+++.....    .+++..++.++.|++.||.|||   ..+++|+||+|+||++++++.+||+|||.+.....
T Consensus        81 ~~~-~~l~~~~~~~~~----~~~~~~~~~i~~~i~~al~~LH---~~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~  152 (287)
T cd07840          81 YMD-HDLTGLLDSPEV----KFTESQIKCYMKQLLEGLQYLH---SNGILHRDIKGSNILINNDGVLKLADFGLARPYTK  152 (287)
T ss_pred             ccc-ccHHHHHhccCC----CCCHHHHHHHHHHHHHHHHHHH---HCCceeccCcHHHeEEcCCCCEEEccccceeeccC
Confidence            998 599998876542    6899999999999999999999   89999999999999999999999999999887655


Q ss_pred             CCceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ..... .....++..|+|||.+.+ ..++.++||||||+++|||+||+.||....
T Consensus       153 ~~~~~-~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~  206 (287)
T cd07840         153 RNSAD-YTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGST  206 (287)
T ss_pred             CCccc-ccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            43211 134456888999998765 457899999999999999999999997544

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=9.9e-37  Score=271.23  Aligned_cols=200  Identities=18%  Similarity=0.200  Sum_probs=170.5

Q ss_pred             CCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-CcceeeeeeeeecCCcceEEEeec
Q 038823           73 YDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCLETPIPILVFEYG  149 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~  149 (338)
                      |++.+.||+|++|.||+|..  +++.|++|.+.............+|+..+.+++ |+||+++++++.+++..++||||+
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~   80 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYM   80 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecC
Confidence            56778999999999999999  678899999876543333344567999999999 999999999999999999999999


Q ss_pred             CCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCC
Q 038823          150 EYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGE  229 (338)
Q Consensus       150 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~  229 (338)
                       +|+|.+++.....   ..+++..+..++.|++.||.|||   +.+++|+||+|.||+++.++.++|+|||.+.......
T Consensus        81 -~~~l~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~Lh---~~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~  153 (283)
T cd07830          81 -EGNLYQLMKDRKG---KPFSESVIRSIIYQILQGLAHIH---KHGFFHRDLKPENLLVSGPEVVKIADFGLAREIRSRP  153 (283)
T ss_pred             -CCCHHHHHHhccc---ccCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEEcCCCCEEEeecccceeccCCC
Confidence             6899998876542   26899999999999999999999   8999999999999999999999999999987665432


Q ss_pred             ceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          230 THIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       230 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ..   ....++..|+|||.+.. ..++.++|+||||+++++|++|++||.....
T Consensus       154 ~~---~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~  204 (283)
T cd07830         154 PY---TDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSE  204 (283)
T ss_pred             Cc---CCCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCCCh
Confidence            22   33457889999998754 4589999999999999999999999976543

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=100.00  E-value=8e-37  Score=267.81  Aligned_cols=200  Identities=22%  Similarity=0.238  Sum_probs=172.8

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      +|+..+.||+|+||.||+|.+  ++..+++|.+.... .....+.+.+|+.++++++|+||+++++++.+.+..++|+||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~   80 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEY   80 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEec
Confidence            477889999999999999999  67889999986532 223446778999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC-ceEEecCCCCcccCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN-VAKLFDFSESISIPE  227 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~-~~kl~Dfg~a~~~~~  227 (338)
                      +++++|.+++.....   ..+++..+..++.|++.||.|||   ..+++|+||+|+||++++++ .+||+|||.+.....
T Consensus        81 ~~~~~L~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~lh---~~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~  154 (257)
T cd08225          81 CDGGDLMKRINRQRG---VLFSEDQILSWFVQISLGLKHIH---DRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLND  154 (257)
T ss_pred             CCCCcHHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEEcCCCCeEEecccccchhccC
Confidence            999999999876432   25899999999999999999999   89999999999999999885 479999999877654


Q ss_pred             CCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      .....  ....|+..|+|||++.+..++.++|+||||+++|+|++|+.||..
T Consensus       155 ~~~~~--~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~  204 (257)
T cd08225         155 SMELA--YTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEG  204 (257)
T ss_pred             Ccccc--cccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            32211  334588899999999888899999999999999999999999974

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=100.00  E-value=1.7e-36  Score=273.35  Aligned_cols=197  Identities=21%  Similarity=0.295  Sum_probs=168.5

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcC--CCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNES--YSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~--~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      .+.|+..+.||+|+||.||+|..  ++..+++|.+...  ........+.+|+.+++.++|+|++++++++...+..++|
T Consensus        14 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   93 (308)
T cd06634          14 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLV   93 (308)
T ss_pred             HHHHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEE
Confidence            34477778899999999999998  6788999988643  1333456788999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||+. |+|.+.+.....    .+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||++...
T Consensus        94 ~e~~~-~~l~~~~~~~~~----~l~~~~~~~~~~~l~~~l~~LH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~  165 (308)
T cd06634          94 MEYCL-GSASDLLEVHKK----PLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIM  165 (308)
T ss_pred             EEccC-CCHHHHHHHcCC----CCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHhEEECCCCcEEECCcccceee
Confidence            99997 688887765432    6899999999999999999999   899999999999999999999999999998765


Q ss_pred             CCCCceeeeecccccCCcccccccc---cCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKR---GGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ...      ....++..|+|||.+.   .+.++.++|||||||++|+|++|..||...
T Consensus       166 ~~~------~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~  217 (308)
T cd06634         166 APA------NXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM  217 (308)
T ss_pred             cCc------ccccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCccc
Confidence            432      2345788999999874   356889999999999999999999998653

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=100.00  E-value=9.9e-37  Score=274.65  Aligned_cols=203  Identities=18%  Similarity=0.258  Sum_probs=168.4

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC-chHHHHHHHHHHHHhccCCcceeeeeeeeecCCc------
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS-DSACKFSINNIVYAAQMDHKHILKLIGCCLETPI------  141 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~------  141 (338)
                      ++|+..+.||+|+||.||+|..  +++.||+|.+..... ......+.+|+.++++++||||+++++++.....      
T Consensus        12 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   91 (310)
T cd07865          12 SKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRYK   91 (310)
T ss_pred             hheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCCC
Confidence            4688999999999999999998  788999998864422 2223456789999999999999999999876543      


Q ss_pred             --ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecC
Q 038823          142 --PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDF  219 (338)
Q Consensus       142 --~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Df  219 (338)
                        .++||||+. ++|.+.+.....    .+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.+||+||
T Consensus        92 ~~~~lv~e~~~-~~l~~~l~~~~~----~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dl~p~nil~~~~~~~kl~df  163 (310)
T cd07865          92 GSFYLVFEFCE-HDLAGLLSNKNV----KFTLSEIKKVMKMLLNGLYYIH---RNKILHRDMKAANILITKDGILKLADF  163 (310)
T ss_pred             ceEEEEEcCCC-cCHHHHHHhccc----CCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEECCCCcEEECcC
Confidence              499999998 588888866542    6899999999999999999999   899999999999999999999999999


Q ss_pred             CCCcccCCCCce--eeeecccccCCcccccccccCC-CCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          220 SESISIPEGETH--IITRSRFGAWTYSAPEYKRGGV-FNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       220 g~a~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      |++.........  .......++..|+|||.+.+.. ++.++||||||+++|||+||+.||....
T Consensus       164 g~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~~  228 (310)
T cd07865         164 GLARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNT  228 (310)
T ss_pred             CCcccccCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCCC
Confidence            998766433221  1112345788999999886643 7889999999999999999999997543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=100.00  E-value=1e-36  Score=272.78  Aligned_cols=202  Identities=18%  Similarity=0.231  Sum_probs=168.7

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      ++|+..+.||+|++|.||+|.+  +++.|++|.+.... .......+.+|++++++++|+||+++++++.+.+..++|||
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   81 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFE   81 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEe
Confidence            4688899999999999999998  68899999986542 22334568899999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC-CCceEEecCCCCcccC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE-ENVAKLFDFSESISIP  226 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~-~~~~kl~Dfg~a~~~~  226 (338)
                      |++ ++|.+++.....   ..+++..+..++.||+.||.|||   +.+++|+||+|+||+++. ++.+||+|||++....
T Consensus        82 ~~~-~~l~~~~~~~~~---~~~~~~~~~~~~~qi~~aL~~LH---~~~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~  154 (294)
T PLN00009         82 YLD-LDLKKHMDSSPD---FAKNPRLIKTYLYQILRGIAYCH---SHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFG  154 (294)
T ss_pred             ccc-ccHHHHHHhCCC---CCcCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCcceEEEECCCCEEEEcccccccccC
Confidence            997 688888765432   24688899999999999999999   899999999999999985 5679999999997654


Q ss_pred             CCCceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      .....  .....++..|+|||++.+. .++.++||||||+++|+|+||+.||....
T Consensus       155 ~~~~~--~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~  208 (294)
T PLN00009        155 IPVRT--FTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDS  208 (294)
T ss_pred             CCccc--cccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            32211  1334578899999988664 57899999999999999999999997543

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=100.00  E-value=6.3e-36  Score=270.28  Aligned_cols=195  Identities=22%  Similarity=0.290  Sum_probs=167.6

Q ss_pred             CCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           73 YDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      |...+.||+|+||.||+|+.  ++..+++|.+....  .......+.+|+.+++.++|+|++++++++.+.+..++||||
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  102 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEY  102 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEec
Confidence            55567799999999999998  78899999986432  223446788999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      +. |+|.+++.....    ++++.++..++.|++.||.|||   +.+++|+||+|+||+++.++.+||+|||++......
T Consensus       103 ~~-~~l~~~l~~~~~----~l~~~~~~~~~~qi~~al~~LH---~~gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~~~  174 (313)
T cd06633         103 CL-GSASDLLEVHKK----PLQEVEIAAITHGALQGLAYLH---SHNMIHRDIKAGNILLTEPGQVKLADFGSASKSSPA  174 (313)
T ss_pred             CC-CCHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCChhhEEECCCCCEEEeecCCCcccCCC
Confidence            97 688888765443    6899999999999999999999   899999999999999999999999999988654322


Q ss_pred             CceeeeecccccCCcccccccc---cCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKR---GGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                            ....|+..|+|||++.   .+.++.++||||||+++|+|++|..||....
T Consensus       175 ------~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~  224 (313)
T cd06633         175 ------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN  224 (313)
T ss_pred             ------CCccccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence                  3446888999999974   4568899999999999999999999987543

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=100.00  E-value=4.6e-36  Score=267.03  Aligned_cols=199  Identities=17%  Similarity=0.236  Sum_probs=169.5

Q ss_pred             CCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC-chHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeec
Q 038823           73 YDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS-DSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYG  149 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  149 (338)
                      |+..+.||.|++|.||+|.+  ++..|++|++..... ......+.+|+.++++++|+|++++++++.+.+..++||||+
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~   80 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFL   80 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEecc
Confidence            56778999999999999998  789999999875432 223356889999999999999999999999999999999999


Q ss_pred             CCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCC
Q 038823          150 EYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGE  229 (338)
Q Consensus       150 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~  229 (338)
                      + ++|.+++.....   ..+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||.+.......
T Consensus        81 ~-~~l~~~~~~~~~---~~~~~~~~~~~~~~i~~~L~~lH---~~~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~  153 (283)
T cd07835          81 D-LDLKKYMDSSPL---TGLDPPLIKSYLYQLLQGIAYCH---SHRVLHRDLKPQNLLIDREGALKLADFGLARAFGVPV  153 (283)
T ss_pred             C-cCHHHHHhhCCC---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCHHHEEEcCCCcEEEeecccccccCCCc
Confidence            6 799999876542   25899999999999999999999   8999999999999999999999999999987654322


Q ss_pred             ceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          230 THIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       230 ~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ...  ....++..|+|||++.+. .++.++|+||||+++|+|+||++||...
T Consensus       154 ~~~--~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~  203 (283)
T cd07835         154 RTY--THEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGD  203 (283)
T ss_pred             ccc--CccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            111  233568899999987664 4789999999999999999999999754

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-37  Score=291.00  Aligned_cols=236  Identities=20%  Similarity=0.264  Sum_probs=197.9

Q ss_pred             CcCCccccCCCceEEEEEE--CC----eEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           74 DERKFIKQDSTYKLYKGFW--QE----RLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        74 ~~~~~lg~G~~g~Vy~~~~--~~----~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      ...+.||+|+||+||+|.|  .+    -+||+|.+......+...+++.|+-.|.+++|||+++|+|+|.... +.||++
T Consensus       699 kk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~qlvtq  777 (1177)
T KOG1025|consen  699 KKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLST-LQLVTQ  777 (1177)
T ss_pred             hhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccch-HHHHHH
Confidence            3457899999999999999  43    3689999987767777789999999999999999999999999765 899999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |++.|+|.++++.+..    .+..+..+.|+.|||+||.|||   .+.++||||-.+|||+.+-..+||+|||+++....
T Consensus       778 ~mP~G~LlDyvr~hr~----~igsq~lLnw~~QIAkgM~YLe---~qrlVHrdLaaRNVLVksP~hvkitdfgla~ll~~  850 (1177)
T KOG1025|consen  778 LMPLGCLLDYVREHRD----NIGSQDLLNWCYQIAKGMKYLE---EQRLVHRDLAARNVLVKSPNHVKITDFGLAKLLAP  850 (1177)
T ss_pred             hcccchHHHHHHHhhc----cccHHHHHHHHHHHHHHHHHHH---hcchhhhhhhhhheeecCCCeEEEEecchhhccCc
Confidence            9999999999988764    7899999999999999999999   99999999999999999999999999999999887


Q ss_pred             CCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccCCcccccHHHHHHHHHhcCcccccc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIA  306 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  306 (338)
                      ...........-.+.|||-|.+....++.++|||||||++||++| |..|++....        +-+...++.+.     
T Consensus       851 d~~ey~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~--------~eI~dlle~ge-----  917 (1177)
T KOG1025|consen  851 DEKEYSAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPA--------EEIPDLLEKGE-----  917 (1177)
T ss_pred             ccccccccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCCH--------HHhhHHHhccc-----
Confidence            766554445555778999999999999999999999999999999 9999987655        22223333222     


Q ss_pred             ccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          307 DPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       307 d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                        +|...+      -+...+.-++.+||..|+
T Consensus       918 --RLsqPp------iCtiDVy~~mvkCwmid~  941 (1177)
T KOG1025|consen  918 --RLSQPP------ICTIDVYMVMVKCWMIDA  941 (1177)
T ss_pred             --cCCCCC------CccHHHHHHHHHHhccCc
Confidence              232222      234458888999998875

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=6e-37  Score=297.77  Aligned_cols=251  Identities=23%  Similarity=0.303  Sum_probs=204.2

Q ss_pred             HHHHhhcCCCcCCccccCCCceEEEEEE-----C----CeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeee
Q 038823           65 ELEIATNNYDERKFIKQDSTYKLYKGFW-----Q----ERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIG  134 (338)
Q Consensus        65 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-----~----~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~  134 (338)
                      .|+...++..+.+.||+|.||.|++|..     .    ...||||..+......+.+.+..|+++|+.+ +|+||+.++|
T Consensus       290 ~~e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG  369 (609)
T KOG0200|consen  290 KWEIPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLG  369 (609)
T ss_pred             ceeechhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhhee
Confidence            5777788888888999999999999986     1    4579999999887777788999999999998 5999999999


Q ss_pred             eeecCCcceEEEeecCCCCHHHhhhcCC---------CCCC--CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCC
Q 038823          135 CCLETPIPILVFEYGEYTTLRDRIFGAP---------QPHF--EPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLIS  203 (338)
Q Consensus       135 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~---------~~~~--~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~  203 (338)
                      +|..++..++|+||+..|+|.+++....         ....  ..++....+.++.|||.|++||+   +.+++||||-+
T Consensus       370 ~~t~~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~---~~~~vHRDLAa  446 (609)
T KOG0200|consen  370 ACTQDGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLA---SVPCVHRDLAA  446 (609)
T ss_pred             eeccCCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHh---hCCccchhhhh
Confidence            9999999999999999999999998776         1111  13899999999999999999999   99999999999


Q ss_pred             CceeeCCCCceEEecCCCCcccCCCCceeeeecc-cccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          204 LCILFNEENVAKLFDFSESISIPEGETHIITRSR-FGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       204 ~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~-~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      +|||+..+..+||+|||+|+.............. .-...|||||.+....|+.+||||||||+||||+| |..||+...
T Consensus       447 RNVLi~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~  526 (609)
T KOG0200|consen  447 RNVLITKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIP  526 (609)
T ss_pred             hhEEecCCCEEEEccccceeccCCCCceEecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCCC
Confidence            9999999999999999999977665554321111 13556999999999999999999999999999999 899998633


Q ss_pred             CCcccccHHHHHHHHHhcCccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          282 THGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       282 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                      .   ..++.    .+++++.             +...+..|..++..+++.||+.+|
T Consensus       527 ~---~~~l~----~~l~~G~-------------r~~~P~~c~~eiY~iM~~CW~~~p  563 (609)
T KOG0200|consen  527 P---TEELL----EFLKEGN-------------RMEQPEHCSDEIYDLMKSCWNADP  563 (609)
T ss_pred             c---HHHHH----HHHhcCC-------------CCCCCCCCCHHHHHHHHHHhCCCc
Confidence            2   11122    2333332             111233455678899999998887

>PHA03210 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=8.7e-37  Score=291.91  Aligned_cols=205  Identities=15%  Similarity=0.172  Sum_probs=161.8

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE---CCeEEEEEE--------------eCcC--CCchHHHHHHHHHHHHhccCCcc
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW---QERLISVMK--------------YNES--YSDSACKFSINNIVYAAQMDHKH  128 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~---~~~~vaik~--------------~~~~--~~~~~~~~~~~e~~~l~~l~h~n  128 (338)
                      ...++|.+.+.||+|+||.||+|..   .+...+.|.              +.+.  ........+.+|+.+|++++|+|
T Consensus       145 ~~~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~Hpn  224 (501)
T PHA03210        145 EFLAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHEN  224 (501)
T ss_pred             hhhhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCC
Confidence            3457899999999999999999876   121122221              1110  01223456789999999999999


Q ss_pred             eeeeeeeeecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceee
Q 038823          129 ILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILF  208 (338)
Q Consensus       129 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill  208 (338)
                      |+++++++.+.+..++|+|++. ++|.+++...............+..++.|++.||.|||   +.+|+||||||+|||+
T Consensus       225 Iv~l~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH---~~gIiHrDLKP~NILl  300 (501)
T PHA03210        225 ILKIEEILRSEANTYMITQKYD-FDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIH---DKKLIHRDIKLENIFL  300 (501)
T ss_pred             cCcEeEEEEECCeeEEEEeccc-cCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEE
Confidence            9999999999999999999997 68887775543211123446678889999999999999   8999999999999999


Q ss_pred             CCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCc
Q 038823          209 NEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTR  277 (338)
Q Consensus       209 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~  277 (338)
                      +.++.+||+|||++........... ....||..|+|||++.+..++.++|||||||++|||++|..++
T Consensus       301 ~~~~~vkL~DFGla~~~~~~~~~~~-~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~p  368 (501)
T PHA03210        301 NCDGKIVLGDFGTAMPFEKEREAFD-YGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFCP  368 (501)
T ss_pred             CCCCCEEEEeCCCceecCccccccc-ccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCCC
Confidence            9999999999999987654332211 3456999999999999989999999999999999999988643

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=100.00  E-value=2.6e-36  Score=265.36  Aligned_cols=195  Identities=18%  Similarity=0.135  Sum_probs=169.3

Q ss_pred             cccCCCceEEEEEE--CCeEEEEEEeCcCCC--chHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCCCH
Q 038823           79 IKQDSTYKLYKGFW--QERLISVMKYNESYS--DSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTL  154 (338)
Q Consensus        79 lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL  154 (338)
                      ||.|+||.||++..  +++.+++|.+.....  ....+.+.+|++++++++|+||+++++++...+..++|+||+++++|
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDL   80 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcH
Confidence            68999999999999  589999999875432  24456788999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCc----
Q 038823          155 RDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGET----  230 (338)
Q Consensus       155 ~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~----  230 (338)
                      .+++.+..     .+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++........    
T Consensus        81 ~~~l~~~~-----~~~~~~~~~i~~qi~~~L~~lH---~~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~  152 (265)
T cd05579          81 ASLLENVG-----SLDEDVARIYIAEIVLALEYLH---SNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLN  152 (265)
T ss_pred             HHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HcCeecCCCCHHHeEEcCCCCEEEEecccchhcccCcccccc
Confidence            99997654     5899999999999999999999   89999999999999999999999999999876543321    


Q ss_pred             --eeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          231 --HIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       231 --~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                        ........++..|+|||.......+.++||||||+++|+|++|+.||....
T Consensus       153 ~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~  205 (265)
T cd05579         153 DDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGET  205 (265)
T ss_pred             cccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCC
Confidence              111134557889999999988889999999999999999999999997543

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=100.00  E-value=1.4e-36  Score=277.24  Aligned_cols=203  Identities=22%  Similarity=0.317  Sum_probs=170.2

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhcc-CCcceeeeeeeeecC--Ccc
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQM-DHKHILKLIGCCLET--PIP  142 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~--~~~  142 (338)
                      ..++|++.+.||+|+||.||+|.+  ++..+++|++.... .......+.+|+.+++++ +|+||+++++++...  ...
T Consensus         5 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~   84 (337)
T cd07852           5 ILRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDI   84 (337)
T ss_pred             hhhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceE
Confidence            456788899999999999999998  68899999886532 233445677899999999 999999999998653  368


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSES  222 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a  222 (338)
                      ++||||++ ++|.+++...      .+++..+..++.|++.||.|||   +.+|+|+||+|+||+++.++.+||+|||.+
T Consensus        85 ~lv~e~~~-~~L~~~~~~~------~~~~~~~~~i~~qi~~~L~~LH---~~~i~H~dl~p~nill~~~~~~kl~d~g~~  154 (337)
T cd07852          85 YLVFEYME-TDLHAVIRAN------ILEDVHKRYIMYQLLKALKYIH---SGNVIHRDLKPSNILLNSDCRVKLADFGLA  154 (337)
T ss_pred             EEEecccc-cCHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCcEEEeeccch
Confidence            99999998 6999988654      4789999999999999999999   899999999999999999999999999998


Q ss_pred             cccCCCCce---eeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          223 ISIPEGETH---IITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       223 ~~~~~~~~~---~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      .........   .......|+..|+|||.+.+ ..++.++||||||+++|+|+||+.||....
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~  217 (337)
T cd07852         155 RSLSELEENPENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTS  217 (337)
T ss_pred             hccccccccccCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCCC
Confidence            766543221   11134468899999998765 457899999999999999999999997543

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=100.00  E-value=4.9e-36  Score=266.43  Aligned_cols=191  Identities=15%  Similarity=0.194  Sum_probs=159.9

Q ss_pred             ccccCCCceEEEEEE--CCeEEEEEEeCcCCC--chHHHHHHHHHH---HHhccCCcceeeeeeeeecCCcceEEEeecC
Q 038823           78 FIKQDSTYKLYKGFW--QERLISVMKYNESYS--DSACKFSINNIV---YAAQMDHKHILKLIGCCLETPIPILVFEYGE  150 (338)
Q Consensus        78 ~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~--~~~~~~~~~e~~---~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~  150 (338)
                      +||+|+||.||+|..  +++.||+|.+.....  ......+..|..   .++...|+||+++++++.+.+..++||||++
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMN   80 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCC
Confidence            489999999999988  678999999875421  121223344443   3444579999999999999999999999999


Q ss_pred             CCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCc
Q 038823          151 YTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGET  230 (338)
Q Consensus       151 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~  230 (338)
                      +++|.+++....     .+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||++........
T Consensus        81 g~~L~~~l~~~~-----~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~~~  152 (278)
T cd05606          81 GGDLHYHLSQHG-----VFSEAEMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKP  152 (278)
T ss_pred             CCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCEEcCCCCHHHEEECCCCCEEEccCcCccccCccCC
Confidence            999999887643     6999999999999999999999   89999999999999999999999999999876543221


Q ss_pred             eeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          231 HIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       231 ~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                          ....|+..|+|||.+.++ .++.++||||+|+++|+|++|+.||...
T Consensus       153 ----~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~  199 (278)
T cd05606         153 ----HASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQH  199 (278)
T ss_pred             ----cCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCC
Confidence                334689999999998755 5899999999999999999999999754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=100.00  E-value=4.1e-36  Score=268.85  Aligned_cols=193  Identities=18%  Similarity=0.243  Sum_probs=168.7

Q ss_pred             CCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCCC
Q 038823           76 RKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTT  153 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gs  153 (338)
                      ...||+|+||.||++..  ++..|++|++... .......+.+|+.+++.++|+||+++++++...+..++||||+++++
T Consensus        25 ~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~  103 (292)
T cd06657          25 FIKIGEGSTGIVCIATVKSSGKLVAVKKMDLR-KQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGA  103 (292)
T ss_pred             HHHcCCCCCeEEEEEEEcCCCeEEEEEEeccc-chhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCCc
Confidence            35799999999999998  7889999998644 33445678999999999999999999999999999999999999999


Q ss_pred             HHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCceee
Q 038823          154 LRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHII  233 (338)
Q Consensus       154 L~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~  233 (338)
                      |.+++...      .+++..+..++.|++.||.|||   +.+++|+||+|+||++++++.++|+|||++.........  
T Consensus       104 L~~~~~~~------~~~~~~~~~~~~ql~~~l~~lH---~~givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~~--  172 (292)
T cd06657         104 LTDIVTHT------RMNEEQIAAVCLAVLKALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR--  172 (292)
T ss_pred             HHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEEcccccceeccccccc--
Confidence            99987543      5889999999999999999999   899999999999999999999999999988765433211  


Q ss_pred             eecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          234 TRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       234 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .....|+..|+|||.+.+..++.++|+||||+++|+|++|..||...
T Consensus       173 ~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~  219 (292)
T cd06657         173 RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE  219 (292)
T ss_pred             ccccccCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            13456889999999998888999999999999999999999999753

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=100.00  E-value=5.4e-36  Score=270.67  Aligned_cols=207  Identities=18%  Similarity=0.212  Sum_probs=170.8

Q ss_pred             CCCcCCccccCCCceEEEEEE----CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecC--Ccce
Q 038823           72 NYDERKFIKQDSTYKLYKGFW----QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLET--PIPI  143 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~----~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~  143 (338)
                      .|++.+.||+|++|.||+|..    .+..||+|.+....  .....+.+.+|+.++++++||||+++++++.+.  +..+
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   80 (316)
T cd07842           1 KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVY   80 (316)
T ss_pred             CceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEE
Confidence            377788999999999999998    36889999998642  122335678899999999999999999999987  7899


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC----CCceEEecC
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE----ENVAKLFDF  219 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~----~~~~kl~Df  219 (338)
                      +||||++ ++|.+++..........+++..+..++.|++.||.|||   +.+|+||||||+||+++.    ++.+||+||
T Consensus        81 lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Df  156 (316)
T cd07842          81 LLFDYAE-HDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLH---SNWVLHRDLKPANILVMGEGPERGVVKIGDL  156 (316)
T ss_pred             EEEeCCC-cCHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHH---hCCEeeCCCCHHHEEEcCCCCccceEEECCC
Confidence            9999998 57877775433222236899999999999999999999   999999999999999999    899999999


Q ss_pred             CCCcccCCCCc-eeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          220 SESISIPEGET-HIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       220 g~a~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      |++........ ........++..|+|||.+.+. .++.++||||||+++|+|++|++||.....
T Consensus       157 g~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~  221 (316)
T cd07842         157 GLARLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREA  221 (316)
T ss_pred             ccccccCCCcccccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCcc
Confidence            99887654322 1111344678899999987664 588999999999999999999999976543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=100.00  E-value=7.5e-36  Score=261.22  Aligned_cols=202  Identities=22%  Similarity=0.246  Sum_probs=177.6

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC-chHHHHHHHHHHHHhccCCcceeeeeeeeecC--CcceEEE
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS-DSACKFSINNIVYAAQMDHKHILKLIGCCLET--PIPILVF  146 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~lv~  146 (338)
                      +|+..+.||+|++|.||+|..  ++..+++|.+..... ....+.+.+|+.++++++|+||+++++++...  +..++|+
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~   80 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFL   80 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEE
Confidence            477789999999999999999  588999999876532 34567889999999999999999999999988  8899999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++++|.+++....     .+++..+..++.+++.||.|||   +.+++|+||+|+||+++.++.++|+|||.+....
T Consensus        81 e~~~~~~L~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~lh---~~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~  152 (260)
T cd06606          81 EYVSGGSLSSLLKKFG-----KLPEPVIRKYTRQILEGLAYLH---SNGIVHRDIKGANILVDSDGVVKLADFGCAKRLG  152 (260)
T ss_pred             EecCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEcCCCCEEEcccccEEecc
Confidence            9999999999997654     5899999999999999999999   8999999999999999999999999999988776


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ............++..|+|||.+.....+.++||||||+++|+|++|..||....
T Consensus       153 ~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~  207 (260)
T cd06606         153 DIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELG  207 (260)
T ss_pred             cccccccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            5543111244568889999999988889999999999999999999999997543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=100.00  E-value=3.3e-36  Score=271.52  Aligned_cols=203  Identities=18%  Similarity=0.259  Sum_probs=170.1

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC-chHHHHHHHHHHHHhccCCcceeeeeeeeecC--CcceE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS-DSACKFSINNIVYAAQMDHKHILKLIGCCLET--PIPIL  144 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~l  144 (338)
                      .++|++.+.||+|+||.||+|.+  ++..||+|.+..... ......+.+|+.++++++|+||+++++++...  +..++
T Consensus         6 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (309)
T cd07845           6 VTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFL   85 (309)
T ss_pred             ccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEE
Confidence            46799999999999999999999  688999999864422 22223467899999999999999999998754  46899


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ||||+. ++|.+++.....    .+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||.+..
T Consensus        86 v~e~~~-~~l~~~l~~~~~----~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~kL~dfg~~~~  157 (309)
T cd07845          86 VMEYCE-QDLASLLDNMPT----PFSESQVKCLMLQLLRGLQYLH---ENFIIHRDLKVSNLLLTDKGCLKIADFGLART  157 (309)
T ss_pred             EEecCC-CCHHHHHHhccc----CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEECccceeee
Confidence            999998 589888876432    6899999999999999999999   89999999999999999999999999999887


Q ss_pred             cCCCCceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          225 IPEGETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       225 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ........  ....++..|+|||.+.+ ..++.++||||||+++|||++|++||.....
T Consensus       158 ~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~~~  214 (309)
T cd07845         158 YGLPAKPM--TPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSE  214 (309)
T ss_pred             cCCccCCC--CcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence            65432111  23345788999998865 4588999999999999999999999976443

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=100.00  E-value=3.9e-36  Score=263.19  Aligned_cols=238  Identities=18%  Similarity=0.256  Sum_probs=192.0

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      +|++.+.||+|++|.||++..  ++..+++|.+.... .......+.+|+.++++++|+||+++++++.+....++||||
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEY   80 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehh
Confidence            477889999999999999988  77889999987543 334456778999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      +++++|.+++.+.... ...+++..++.++.+++.||.|||   +.+++|+||+|.||+++.++.+||+|||++......
T Consensus        81 ~~~~~L~~~~~~~~~~-~~~~~~~~~~~~~~~l~~al~~lh---~~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~  156 (256)
T cd08530          81 APFGDLSKAISKRKKK-RKLIPEQEIWRIFIQLLRGLQALH---EQKILHRDLKSANILLVANDLVKIGDLGISKVLKKN  156 (256)
T ss_pred             cCCCCHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCCcceEEEecCCcEEEeeccchhhhccC
Confidence            9999999988663211 126899999999999999999999   999999999999999999999999999998877554


Q ss_pred             CceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHHHHHHHhcCcccccccc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADP  308 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~  308 (338)
                      ..    ....++..|+|||.+.+..++.++|+||||+++|+|++|+.||.....    .   + ............+.  
T Consensus       157 ~~----~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~----~---~-~~~~~~~~~~~~~~--  222 (256)
T cd08530         157 MA----KTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSM----Q---D-LRYKVQRGKYPPIP--  222 (256)
T ss_pred             Cc----ccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH----H---H-HHHHHhcCCCCCCc--
Confidence            21    334578899999999888899999999999999999999999975332    1   1 11111222211111  


Q ss_pred             ccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          309 IIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       309 ~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                                 ......+..++.+||+.+|
T Consensus       223 -----------~~~~~~~~~li~~~l~~~p  241 (256)
T cd08530         223 -----------PIYSQDLQNFIRSMLQVKP  241 (256)
T ss_pred             -----------hhhCHHHHHHHHHHcCCCc
Confidence                       1223458889999998876

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=100.00  E-value=3.1e-36  Score=270.57  Aligned_cols=205  Identities=20%  Similarity=0.228  Sum_probs=170.5

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCC----
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETP----  140 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~----  140 (338)
                      ...++|++.+.||+|+||.||+|..  ++..|++|.+.... .......+.+|+.++++++||||+++++++.+..    
T Consensus         4 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~   83 (302)
T cd07864           4 RCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALD   83 (302)
T ss_pred             hhhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhh
Confidence            4567899999999999999999999  67899999987543 2223356778999999999999999999987654    


Q ss_pred             ------cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCce
Q 038823          141 ------IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVA  214 (338)
Q Consensus       141 ------~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~  214 (338)
                            ..++|+||+++ ++.+.+.....    .+++..+..++.|++.||.|||   ..+|+|+||+|+||++++++.+
T Consensus        84 ~~~~~~~~~lv~e~~~~-~l~~~l~~~~~----~~~~~~~~~i~~qi~~aL~~LH---~~~i~H~dl~p~nili~~~~~~  155 (302)
T cd07864          84 FKKDKGAFYLVFEYMDH-DLMGLLESGLV----HFSEDHIKSFMKQLLEGLNYCH---KKNFLHRDIKCSNILLNNKGQI  155 (302)
T ss_pred             ccccCCcEEEEEcccCc-cHHHHHhcCCC----CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCcE
Confidence                  78999999995 77777765432    6899999999999999999999   8999999999999999999999


Q ss_pred             EEecCCCCcccCCCCceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          215 KLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       215 kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ||+|||.+........... ....++..|+|||.+.+ ..++.++|||||||++|+|++|++||....
T Consensus       156 kl~dfg~~~~~~~~~~~~~-~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~  222 (302)
T cd07864         156 KLADFGLARLYNSEESRPY-TNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQ  222 (302)
T ss_pred             EeCcccccccccCCccccc-ccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCC
Confidence            9999999876654322111 23346778999998765 347899999999999999999999997543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=100.00  E-value=5.6e-36  Score=266.70  Aligned_cols=199  Identities=20%  Similarity=0.251  Sum_probs=167.6

Q ss_pred             CCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCc-hHHHHHHHHHHHHhcc---CCcceeeeeeeeecCCc-----
Q 038823           73 YDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSD-SACKFSINNIVYAAQM---DHKHILKLIGCCLETPI-----  141 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~-~~~~~~~~e~~~l~~l---~h~niv~l~~~~~~~~~-----  141 (338)
                      |++.+.||+|+||.||+|.+  ++..+|+|.+...... .....+.+|+.+++++   .|+|++++++++.+.+.     
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~   80 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELK   80 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCce
Confidence            56778999999999999999  5889999999754322 2234566788777666   59999999999987776     


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCC
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSE  221 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~  221 (338)
                      .+++|||+. ++|.+++.....   ..+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.+||+|||.
T Consensus        81 ~~l~~e~~~-~~l~~~l~~~~~---~~l~~~~~~~~~~~i~~al~~LH---~~~i~h~~l~~~nili~~~~~~~l~dfg~  153 (287)
T cd07838          81 LTLVFEHVD-QDLATYLSKCPK---PGLPPETIKDLMRQLLRGVDFLH---SHRIVHRDLKPQNILVTSDGQVKIADFGL  153 (287)
T ss_pred             eEEEehhcc-cCHHHHHHHccC---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCChhhEEEccCCCEEEeccCc
Confidence            899999998 589988876432   25899999999999999999999   89999999999999999999999999999


Q ss_pred             CcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          222 SISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       222 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      +.........   ....++..|+|||.+.+..++.++|+||||+++|+|++|++||....
T Consensus       154 ~~~~~~~~~~---~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~  210 (287)
T cd07838         154 ARIYSFEMAL---TSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTS  210 (287)
T ss_pred             ceeccCCccc---ccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCC
Confidence            8776543221   23347889999999998889999999999999999999999997644

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=100.00  E-value=2.6e-36  Score=275.23  Aligned_cols=203  Identities=15%  Similarity=0.213  Sum_probs=170.9

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC-chHHHHHHHHHHHHhccCCcceeeeeeeeec----CCcc
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS-DSACKFSINNIVYAAQMDHKHILKLIGCCLE----TPIP  142 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~  142 (338)
                      .++|++.+.||+|++|.||+|..  ++..|++|++..... ......+.+|+.++++++|+||+++++++..    ....
T Consensus         4 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   83 (334)
T cd07855           4 GSRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDV   83 (334)
T ss_pred             hhceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceE
Confidence            36799999999999999999998  788999999876432 2345677889999999999999999998753    3467


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSES  222 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a  222 (338)
                      ++||||+. ++|.+++....     .+++..+..++.|++.||.|||   ..+|+|+||||+||+++.++.+||+|||++
T Consensus        84 ~lv~e~~~-~~l~~~~~~~~-----~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~Nil~~~~~~~kl~dfg~~  154 (334)
T cd07855          84 YVVMDLME-SDLHHIIHSDQ-----PLTEEHIRYFLYQLLRGLKYIH---SANVIHRDLKPSNLLVNEDCELRIGDFGMA  154 (334)
T ss_pred             EEEEehhh-hhHHHHhccCC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCcEEecccccc
Confidence            99999997 69999886543     5899999999999999999999   899999999999999999999999999998


Q ss_pred             cccCCCCce--eeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          223 ISIPEGETH--IITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       223 ~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      .........  .......++..|+|||.+.+ ..++.++||||||+++|||++|+.||....
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~  216 (334)
T cd07855         155 RGLSSSPTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKN  216 (334)
T ss_pred             eeecccCcCCCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCC
Confidence            765432211  11123468889999998765 458999999999999999999999997543

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=4e-36  Score=274.84  Aligned_cols=195  Identities=18%  Similarity=0.242  Sum_probs=165.6

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCC------
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETP------  140 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~------  140 (338)
                      .++|...+.||+|+||.||+|.+  ++..||+|++.... .......+.+|+.++++++|+||+++++++....      
T Consensus        14 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~   93 (342)
T cd07879          14 PERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQ   93 (342)
T ss_pred             ccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCc
Confidence            37899999999999999999998  78899999987543 2223456789999999999999999999987543      


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                      ..++|+||+. .+|.+++..       .+++..+..++.|++.||.|||   ..+++||||||+||+++.++.+||+|||
T Consensus        94 ~~~lv~e~~~-~~l~~~~~~-------~~~~~~~~~~~~qi~~aL~~LH---~~~i~H~dlkp~NIll~~~~~~kL~dfg  162 (342)
T cd07879          94 DFYLVMPYMQ-TDLQKIMGH-------PLSEDKVQYLVYQMLCGLKYIH---SAGIIHRDLKPGNLAVNEDCELKILDFG  162 (342)
T ss_pred             eEEEEecccc-cCHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEeeCC
Confidence            4589999997 578776521       5889999999999999999999   8999999999999999999999999999


Q ss_pred             CCcccCCCCceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          221 ESISIPEGETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ++.......     ....++..|+|||.+.+ ..++.++|||||||++|||++|+.||...
T Consensus       163 ~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~  218 (342)
T cd07879         163 LARHADAEM-----TGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGK  218 (342)
T ss_pred             CCcCCCCCC-----CCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCC
Confidence            987654322     23457888999999876 45899999999999999999999999753

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>PHA02882 putative serine/threonine kinase; Provisional

Probab=100.00  E-value=5.6e-36  Score=268.21  Aligned_cols=204  Identities=13%  Similarity=0.091  Sum_probs=156.1

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--C---CeEEEEEEeCcCCCchHH----------HHHHHHHHHHhccCCcceeeee
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--Q---ERLISVMKYNESYSDSAC----------KFSINNIVYAAQMDHKHILKLI  133 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~---~~~vaik~~~~~~~~~~~----------~~~~~e~~~l~~l~h~niv~l~  133 (338)
                      ..+.|.+.++||+|+||.||+|.+  +   +..+++|...........          .....+...+..+.|+||++++
T Consensus        10 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~   89 (294)
T PHA02882         10 TGKEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYY   89 (294)
T ss_pred             CCCceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEE
Confidence            346799999999999999999998  3   345566654322111100          1122334455667899999999


Q ss_pred             eeeecCC----cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeC
Q 038823          134 GCCLETP----IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFN  209 (338)
Q Consensus       134 ~~~~~~~----~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~  209 (338)
                      +++....    ..++++|++. .++.+.+....     ..++..+..++.|++.||.|||   +.+|+||||||+|||++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~i~~qi~~~l~~lH---~~~iiHrDiKp~Nill~  160 (294)
T PHA02882         90 GCGSFKRCRMYYRFILLEKLV-ENTKEIFKRIK-----CKNKKLIKNIMKDMLTTLEYIH---EHGISHGDIKPENIMVD  160 (294)
T ss_pred             EeeeEecCCceEEEEEEehhc-cCHHHHHHhhc-----cCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEc
Confidence            9876543    2367788776 57777665432     4678889999999999999999   89999999999999999


Q ss_pred             CCCceEEecCCCCcccCCCCce-----eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          210 EENVAKLFDFSESISIPEGETH-----IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       210 ~~~~~kl~Dfg~a~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      .++.++|+|||+|+........     .......||+.|+|||...+..++.++|||||||++|||++|+.||....
T Consensus       161 ~~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~  237 (294)
T PHA02882        161 GNNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFG  237 (294)
T ss_pred             CCCcEEEEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccc
Confidence            9999999999999766432211     11123469999999999999999999999999999999999999998653

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=100.00  E-value=9.7e-36  Score=264.62  Aligned_cols=199  Identities=21%  Similarity=0.243  Sum_probs=172.2

Q ss_pred             CCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCc-hHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeec
Q 038823           73 YDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSD-SACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYG  149 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  149 (338)
                      |+..+.||+|++|.||+|..  ++..+++|.+...... .....+.+|+.++++++|+||+++++++..++..++|+||+
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   80 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFM   80 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEecc
Confidence            56678899999999999998  7888999998765322 34567889999999999999999999999999999999999


Q ss_pred             CCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCC
Q 038823          150 EYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGE  229 (338)
Q Consensus       150 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~  229 (338)
                      + ++|.+++.....    .+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||.+.......
T Consensus        81 ~-~~l~~~l~~~~~----~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~  152 (283)
T cd05118          81 D-TDLYKLIKDRQR----GLPESLIKSYLYQLLQGLAFCH---SHGILHRDLKPENLLINTEGVLKLADFGLARSFGSPV  152 (283)
T ss_pred             C-CCHHHHHHhhcc----cCCHHHHHHHHHHHHHHHHHHH---HCCeeecCcCHHHEEECCCCcEEEeeeeeeEecCCCc
Confidence            8 588888876543    6899999999999999999999   8999999999999999999999999999987765543


Q ss_pred             ceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          230 THIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       230 ~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ..  .....++..|+|||.+.+. .++.++|+||||+++|+|+||+.||...+
T Consensus       153 ~~--~~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~  203 (283)
T cd05118         153 RP--YTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKS  203 (283)
T ss_pred             cc--ccCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCC
Confidence            11  1334578899999998776 68999999999999999999999997544

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=1.5e-36  Score=277.07  Aligned_cols=200  Identities=17%  Similarity=0.210  Sum_probs=170.2

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecC-----Cc
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLET-----PI  141 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~  141 (338)
                      .+.|.+.+.||+|+||.||+|..  ++..|++|.+.... .......+.+|+.+++.++|+||+++++++...     ..
T Consensus         4 ~~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~   83 (337)
T cd07858           4 DTKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFND   83 (337)
T ss_pred             ccceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCc
Confidence            45688999999999999999998  78899999987542 233345678899999999999999999988654     34


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCC
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSE  221 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~  221 (338)
                      .++|+||+. ++|.+++....     .+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||+
T Consensus        84 ~~lv~e~~~-~~L~~~~~~~~-----~l~~~~~~~i~~qi~~aL~~LH---~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~  154 (337)
T cd07858          84 VYIVYELMD-TDLHQIIRSSQ-----TLSDDHCQYFLYQLLRGLKYIH---SANVLHRDLKPSNLLLNANCDLKICDFGL  154 (337)
T ss_pred             EEEEEeCCC-CCHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCEEECcCcc
Confidence            799999997 78998887653     6999999999999999999999   89999999999999999999999999999


Q ss_pred             CcccCCCCceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          222 SISIPEGETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       222 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      +.........  .....++..|+|||.+.+ ..++.++|||||||++|+|++|++||...
T Consensus       155 ~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~  212 (337)
T cd07858         155 ARTTSEKGDF--MTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGK  212 (337)
T ss_pred             ccccCCCccc--ccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCC
Confidence            9876543211  134457889999998765 45899999999999999999999999754

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=100.00  E-value=3.8e-36  Score=266.74  Aligned_cols=202  Identities=19%  Similarity=0.201  Sum_probs=176.1

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccC-CcceeeeeeeeecCCcceEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMD-HKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv  145 (338)
                      ++|...+.||+|++|.||+|..  ++..+++|.+....  .......+.+|+.++.+++ |+||+++++++...+..++|
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv   80 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFV   80 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEE
Confidence            4688899999999999999998  78899999987532  2334467889999999998 99999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||+++++|.+++....     .+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||++...
T Consensus        81 ~e~~~~~~L~~~l~~~~-----~l~~~~~~~i~~ql~~~l~~Lh---~~~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~  152 (280)
T cd05581          81 LEYAPNGELLQYIRKYG-----SLDEKCTRFYAAEILLALEYLH---SKGIIHRDLKPENILLDKDMHIKITDFGTAKVL  152 (280)
T ss_pred             EcCCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHeEECCCCCEEecCCcccccc
Confidence            99999999999997654     6999999999999999999999   899999999999999999999999999998766


Q ss_pred             CCCCce------------------eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          226 PEGETH------------------IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       226 ~~~~~~------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ......                  .......++..|+|||......++.++|+||||++++++++|+.||...
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~  225 (280)
T cd05581         153 DPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGS  225 (280)
T ss_pred             CCccccccCCCCCccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCc
Confidence            443211                  1113345788999999998888999999999999999999999999854

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-37  Score=271.45  Aligned_cols=202  Identities=19%  Similarity=0.202  Sum_probs=177.8

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcceE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~l  144 (338)
                      ..+|.....||+|+||.|.+|..  ++..+|||++++..  .+.+.+--+.|-++|... +-|.++++..++++.+.+|+
T Consensus       348 ~tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDRLyF  427 (683)
T KOG0696|consen  348 ATDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLYF  427 (683)
T ss_pred             ecccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhheee
Confidence            34688899999999999999998  66789999998765  233445556777787766 47899999999999999999


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ||||+.||+|--++..-+     .+.+..+..++.+||-||-|||   +++||+||||..||++|.+|++||+|||+++.
T Consensus       428 VMEyvnGGDLMyhiQQ~G-----kFKEp~AvFYAaEiaigLFFLh---~kgIiYRDLKLDNvmLd~eGHiKi~DFGmcKE  499 (683)
T KOG0696|consen  428 VMEYVNGGDLMYHIQQVG-----KFKEPVAVFYAAEIAIGLFFLH---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKE  499 (683)
T ss_pred             EEEEecCchhhhHHHHhc-----ccCCchhhhhhHHHHHHhhhhh---cCCeeeeeccccceEeccCCceEeeecccccc
Confidence            999999999999998776     5889999999999999999999   99999999999999999999999999999976


Q ss_pred             cCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          225 IPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       225 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      .--....  +....||+.|+|||++...+|+.++|+|||||+||||+.|++||+...
T Consensus       500 ni~~~~T--TkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeD  554 (683)
T KOG0696|consen  500 NIFDGVT--TKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGED  554 (683)
T ss_pred             cccCCcc--eeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCCC
Confidence            5443322  267789999999999999999999999999999999999999999643

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=100.00  E-value=1.4e-35  Score=267.93  Aligned_cols=199  Identities=20%  Similarity=0.213  Sum_probs=165.5

Q ss_pred             CCccccCCCceEEEEEECCeEEEEEEeCcC-CCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCCCH
Q 038823           76 RKFIKQDSTYKLYKGFWQERLISVMKYNES-YSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTL  154 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~-~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL  154 (338)
                      .+.+|.|+++.||++..++..||+|++... ........+.+|+.+++.++|+||+++++++.+.+..+++|||+++|+|
T Consensus         7 ~~~~~~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~l   86 (314)
T cd08216           7 GKCFEDLMIVHLAKHKPTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGSC   86 (314)
T ss_pred             hHhhcCCceEEEEEecCCCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCCH
Confidence            444566666666666668999999999765 3455667899999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCc----
Q 038823          155 RDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGET----  230 (338)
Q Consensus       155 ~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~----  230 (338)
                      .+++.....   ..+++..+..++.|++.||.|||   +.+|+|+||||+||+++.++.+||+|||.+........    
T Consensus        87 ~~~l~~~~~---~~~~~~~~~~~~~~l~~~L~~LH---~~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~  160 (314)
T cd08216          87 EDLLKTHFP---EGLPELAIAFILKDVLNALDYIH---SKGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRV  160 (314)
T ss_pred             HHHHHHhcc---cCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCcceEEEecCCceEEecCccceeeccccccccc
Confidence            999976432   25889999999999999999999   89999999999999999999999999998865532211    


Q ss_pred             -eeeeecccccCCcccccccccC--CCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          231 -HIITRSRFGAWTYSAPEYKRGG--VFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       231 -~~~~~~~~gt~~y~aPE~~~~~--~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                       ........++..|+|||++...  .++.++|+|||||++|||++|+.||...
T Consensus       161 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~  213 (314)
T cd08216         161 VHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDM  213 (314)
T ss_pred             cccccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCC
Confidence             1111334567889999998663  4889999999999999999999999754

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.9e-35  Score=270.73  Aligned_cols=205  Identities=18%  Similarity=0.201  Sum_probs=173.4

Q ss_pred             cCHHHHHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeee
Q 038823           61 FSAKELEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCL  137 (338)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~  137 (338)
                      ....++...+++|...+.||+|+||.||+|..  ++..||+|++.... .....+.+.+|+.++++++|+||+++++++.
T Consensus         7 ~~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~   86 (345)
T cd07877           7 ELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFT   86 (345)
T ss_pred             hHHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeee
Confidence            34556777889999999999999999999987  78899999987543 2333466889999999999999999999886


Q ss_pred             cC------CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC
Q 038823          138 ET------PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE  211 (338)
Q Consensus       138 ~~------~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~  211 (338)
                      ..      +..+++++++ +++|.+++...      .+++..+..++.|++.||.|||   +.+|+||||||+||+++.+
T Consensus        87 ~~~~~~~~~~~~lv~~~~-~~~L~~~~~~~------~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIll~~~  156 (345)
T cd07877          87 PARSLEEFNDVYLVTHLM-GADLNNIVKCQ------KLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNED  156 (345)
T ss_pred             ecccccccccEEEEehhc-ccCHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCChHHEEEcCC
Confidence            43      3467888877 58998887543      5899999999999999999999   8999999999999999999


Q ss_pred             CceEEecCCCCcccCCCCceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          212 NVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       212 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      +.+||+|||++.......     ....++..|+|||.+.+ ..++.++|||||||++|+|++|+.||...
T Consensus       157 ~~~kl~dfg~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~  221 (345)
T cd07877         157 CELKILDFGLARHTDDEM-----TGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT  221 (345)
T ss_pred             CCEEEecccccccccccc-----cccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            999999999987654321     33457889999998866 46889999999999999999999999754

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=100.00  E-value=5.9e-36  Score=272.13  Aligned_cols=202  Identities=17%  Similarity=0.176  Sum_probs=171.7

Q ss_pred             HHHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeec-CC
Q 038823           65 ELEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLE-TP  140 (338)
Q Consensus        65 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~-~~  140 (338)
                      ++...+++|+..+.||.|+||.||+|..  ++..|++|++.... .....+.+.+|+.++++++||||+++++++.. ..
T Consensus         4 ~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~   83 (328)
T cd07856           4 TVFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLE   83 (328)
T ss_pred             ceeccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCC
Confidence            3445788899999999999999999998  78899999886532 23344677899999999999999999999865 56


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                      ..++|+||+. ++|.+++...      ++++..+..++.|++.||.|||   ..+++|+||+|+||++++++.++|+|||
T Consensus        84 ~~~lv~e~~~-~~L~~~~~~~------~~~~~~~~~~~~ql~~aL~~LH---~~~iiH~dl~p~Nili~~~~~~~l~dfg  153 (328)
T cd07856          84 DIYFVTELLG-TDLHRLLTSR------PLEKQFIQYFLYQILRGLKYVH---SAGVVHRDLKPSNILINENCDLKICDFG  153 (328)
T ss_pred             cEEEEeehhc-cCHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEeECCCCCEEeCccc
Confidence            7899999985 7898888643      5788889999999999999999   8999999999999999999999999999


Q ss_pred             CCcccCCCCceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          221 ESISIPEGETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      .+.......     ....++..|+|||.+.+ ..++.++||||||+++|+|+||+.||....
T Consensus       154 ~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~  210 (328)
T cd07856         154 LARIQDPQM-----TGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKD  210 (328)
T ss_pred             cccccCCCc-----CCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            987653322     23456888999998765 568999999999999999999999997543

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.2e-35  Score=257.92  Aligned_cols=199  Identities=23%  Similarity=0.308  Sum_probs=176.0

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC-chHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS-DSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      +|+..+.||+|++|.||+|..  ++..+++|.+..... ....+.+.+|++++.+++|+|++++++++.+.+..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEY   80 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEec
Confidence            477889999999999999988  678899999976532 24557889999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      +++++|.+++....     .+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||.+......
T Consensus        81 ~~~~~L~~~~~~~~-----~l~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~  152 (254)
T cd06627          81 AENGSLRQIIKKFG-----PFPESLVAVYVYQVLQGLAYLH---EQGVIHRDIKAANILTTKDGVVKLADFGVATKLNDV  152 (254)
T ss_pred             CCCCcHHHHHHhcc-----CCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCCHHHEEECCCCCEEEeccccceecCCC
Confidence            99999999997653     6899999999999999999999   999999999999999999999999999999877654


Q ss_pred             CceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ...  .....++..|+|||...+..++.++||||+|+++|+|++|+.||...
T Consensus       153 ~~~--~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~  202 (254)
T cd06627         153 SKD--DASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDL  202 (254)
T ss_pred             ccc--ccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCc
Confidence            322  13445788999999988877899999999999999999999999743

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=100.00  E-value=2.7e-35  Score=257.70  Aligned_cols=203  Identities=23%  Similarity=0.278  Sum_probs=176.9

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      +|+..+.||.|++|.||++.+  ++..+++|.+.... .......+.+|+++++.++|+|++++++.+...+..++|+||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~   80 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEY   80 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEe
Confidence            477889999999999999999  58899999987653 234557788999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      +++++|.+++...... ...+++..+..++.+++.||.|||   +.+++|+||+|+||+++.++.++|+|||.+......
T Consensus        81 ~~~~~L~~~l~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lh---~~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~  156 (258)
T cd08215          81 ADGGDLSQKIKKQKKE-GKPFPEEQILDWFVQLCLALKYLH---SRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSST  156 (258)
T ss_pred             cCCCcHHHHHHHhhcc-CCCcCHHHHHHHHHHHHHHHHHHH---hCCEecccCChHHeEEcCCCcEEECCccceeecccC
Confidence            9999999999765310 127999999999999999999999   889999999999999999999999999998776554


Q ss_pred             CceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ..  ......|+..|+|||...+..++.++|+||+|+++++|++|+.||...
T Consensus       157 ~~--~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~  206 (258)
T cd08215         157 VD--LAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGE  206 (258)
T ss_pred             cc--eecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCC
Confidence            31  123456888999999998888999999999999999999999999753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=100.00  E-value=6.1e-36  Score=267.03  Aligned_cols=199  Identities=19%  Similarity=0.208  Sum_probs=169.4

Q ss_pred             CCCcCCccccCCCceEEEEEE-----CCeEEEEEEeCcCC---CchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcc
Q 038823           72 NYDERKFIKQDSTYKLYKGFW-----QERLISVMKYNESY---SDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIP  142 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~-----~~~~vaik~~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~  142 (338)
                      +|++.+.||+|++|.||++..     ++..+++|.+....   .....+.+.+|+.++.++ +|+||+++++++..+...
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~   80 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKL   80 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEE
Confidence            477788999999999999986     46789999986432   122345678999999999 599999999999999999


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSES  222 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a  222 (338)
                      ++||||+++++|.+++....     .+++..+..++.|++.||.|||   ..+++|+||+|.||+++.++.++|+|||++
T Consensus        81 ~lv~e~~~~~~L~~~~~~~~-----~~~~~~~~~~~~ql~~~l~~lH---~~~~~H~dl~p~nil~~~~~~~~l~dfg~~  152 (288)
T cd05583          81 HLILDYVNGGELFTHLYQRE-----HFTESEVRVYIAEIVLALDHLH---QLGIIYRDIKLENILLDSEGHVVLTDFGLS  152 (288)
T ss_pred             EEEEecCCCCcHHHHHhhcC-----CcCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCCCEEEEECccc
Confidence            99999999999999987543     5899999999999999999999   899999999999999999999999999998


Q ss_pred             cccCCCCceeeeecccccCCcccccccccCC--CCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          223 ISIPEGETHIITRSRFGAWTYSAPEYKRGGV--FNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       223 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ........... ....|+..|+|||.+.+..  .+.++|+||||+++|+|+||..||..
T Consensus       153 ~~~~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~  210 (288)
T cd05583         153 KEFLAEEEERA-YSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTV  210 (288)
T ss_pred             ccccccccccc-ccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCccc
Confidence            76544322211 3345888999999987655  78899999999999999999999964

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=100.00  E-value=1.2e-35  Score=270.18  Aligned_cols=198  Identities=17%  Similarity=0.171  Sum_probs=163.4

Q ss_pred             CccccC--CCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCC
Q 038823           77 KFIKQD--STYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEY  151 (338)
Q Consensus        77 ~~lg~G--~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~  151 (338)
                      ..||.|  +||+||++..  +++.||+|.+.... .....+.+.+|+.+++.++||||+++++++..++..++|+||+.+
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~   83 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAY   83 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecccC
Confidence            346666  8999999998  88999999987543 334457788999999999999999999999999999999999999


Q ss_pred             CCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCce
Q 038823          152 TTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH  231 (338)
Q Consensus       152 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~  231 (338)
                      ++|.+++.....   ..+++..+..++.|++.||.|||   +.+++||||||+||+++.++.++++||+.+.........
T Consensus        84 ~~l~~~l~~~~~---~~~~~~~~~~~~~qi~~aL~~lH---~~~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~  157 (328)
T cd08226          84 GSANSLLKTYFP---EGMSEALIGNILFGALRGLNYLH---QNGYIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQK  157 (328)
T ss_pred             CCHHHHHHhhcc---cCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEeCCCcEEEechHHHhhhhccCcc
Confidence            999999876532   25899999999999999999999   899999999999999999999999999755333221110


Q ss_pred             -----eeeecccccCCcccccccccC--CCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          232 -----IITRSRFGAWTYSAPEYKRGG--VFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       232 -----~~~~~~~gt~~y~aPE~~~~~--~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                           .......++..|+|||++.+.  .++.++|||||||++|+|++|+.||...
T Consensus       158 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~  213 (328)
T cd08226         158 AKVVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDM  213 (328)
T ss_pred             ccccccccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCc
Confidence                 000112346679999998764  4789999999999999999999999754

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=100.00  E-value=4.4e-36  Score=270.56  Aligned_cols=205  Identities=16%  Similarity=0.219  Sum_probs=168.1

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC-chHHHHHHHHHHHHhccCCcceeeeeeeeecCC------
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS-DSACKFSINNIVYAAQMDHKHILKLIGCCLETP------  140 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~------  140 (338)
                      .++|++.+.||+|+||.||+|.+  +++.+++|.+..... ......+.+|+++++.++|+||+++++++.+..      
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   86 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRK   86 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccccc
Confidence            46899999999999999999998  688999998865432 222345678999999999999999999875433      


Q ss_pred             --cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEec
Q 038823          141 --IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFD  218 (338)
Q Consensus       141 --~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~D  218 (338)
                        ..++|+||+. ++|.+.+.....    .+++..+..++.|+++||.|||   +.+++|+||||+||++++++.++|+|
T Consensus        87 ~~~~~lv~~~~~-~~l~~~~~~~~~----~~~~~~~~~i~~~l~~al~~lH---~~~i~H~dl~p~nil~~~~~~~~l~d  158 (311)
T cd07866          87 RGSVYMVTPYMD-HDLSGLLENPSV----KLTESQIKCYMLQLLEGINYLH---ENHILHRDIKAANILIDNQGILKIAD  158 (311)
T ss_pred             CceEEEEEecCC-cCHHHHHhcccc----CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEECc
Confidence              4699999998 578777765432    6999999999999999999999   89999999999999999999999999


Q ss_pred             CCCCcccCCCCcee---------eeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          219 FSESISIPEGETHI---------ITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       219 fg~a~~~~~~~~~~---------~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ||++..........         ......++..|+|||.+.+. .++.++||||||+++|||++|++||.....
T Consensus       159 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~  232 (311)
T cd07866         159 FGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSD  232 (311)
T ss_pred             CccchhccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCCH
Confidence            99987654322110         01233567889999987654 488999999999999999999999975443

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=100.00  E-value=4.1e-35  Score=268.24  Aligned_cols=200  Identities=16%  Similarity=0.190  Sum_probs=170.5

Q ss_pred             HHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCC--
Q 038823           66 LEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETP--  140 (338)
Q Consensus        66 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~--  140 (338)
                      +....++|++.+.||+|+||.||+|..  ++..||+|.+.... .......+.+|+.++++++|+||+++++++....  
T Consensus        10 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   89 (343)
T cd07880          10 IWEVPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSL   89 (343)
T ss_pred             hhccccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCccc
Confidence            344577899999999999999999998  78899999986543 2333456889999999999999999999987654  


Q ss_pred             ----cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEE
Q 038823          141 ----IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKL  216 (338)
Q Consensus       141 ----~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl  216 (338)
                          ..++||||+ +++|.+++...      .+++..+..++.|++.||.|||   ..+|+||||||+||+++.++.++|
T Consensus        90 ~~~~~~~lv~e~~-~~~l~~~~~~~------~l~~~~~~~i~~qi~~al~~LH---~~gi~H~dlkp~Nill~~~~~~kl  159 (343)
T cd07880          90 DRFHDFYLVMPFM-GTDLGKLMKHE------KLSEDRIQFLVYQMLKGLKYIH---AAGIIHRDLKPGNLAVNEDCELKI  159 (343)
T ss_pred             cccceEEEEEecC-CCCHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEE
Confidence                358999998 57999888642      5899999999999999999999   899999999999999999999999


Q ss_pred             ecCCCCcccCCCCceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          217 FDFSESISIPEGETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       217 ~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      +|||++.......     ....++..|+|||.+.+ ..++.++|+||||+++|+|++|+.||...
T Consensus       160 ~dfg~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~  219 (343)
T cd07880         160 LDFGLARQTDSEM-----TGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGH  219 (343)
T ss_pred             eecccccccccCc-----cccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            9999987654322     33457889999999876 45889999999999999999999999754

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-38  Score=262.08  Aligned_cols=242  Identities=17%  Similarity=0.194  Sum_probs=185.1

Q ss_pred             cCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhc-cCCcceeeeeeeeecCCcceEEEeecCC
Q 038823           75 ERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQ-MDHKHILKLIGCCLETPIPILVFEYGEY  151 (338)
Q Consensus        75 ~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~-l~h~niv~l~~~~~~~~~~~lv~e~~~~  151 (338)
                      ....||.|+||+|+|-..  .|+..|||++.......+.++++.|.+...+ -+.||||++||.+...+..|+.||+|+ 
T Consensus        68 dlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMELMd-  146 (361)
T KOG1006|consen   68 DLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMELMD-  146 (361)
T ss_pred             HHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHHHh-
Confidence            446799999999999988  8999999999887666777888888886554 469999999999999999999999999 


Q ss_pred             CCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCce
Q 038823          152 TTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH  231 (338)
Q Consensus       152 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~  231 (338)
                      .||+.+.+.--.-....+++...-.|..-++.||.||-.  ...|||||+||+|||+|..|.+||+|||.+...-.+-. 
T Consensus       147 ~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~--~lkiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~SiA-  223 (361)
T KOG1006|consen  147 ISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKE--ELKIIHRDVKPSNILLDRHGDVKLCDFGICGQLVDSIA-  223 (361)
T ss_pred             hhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHH--HhhhhhccCChhheEEecCCCEeeecccchHhHHHHHH-
Confidence            788765442100001268999999999999999999986  78999999999999999999999999999876544322 


Q ss_pred             eeeecccccCCcccccccccC--CCCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHHHHHHHhcCccccccccc
Q 038823          232 IITRSRFGAWTYSAPEYKRGG--VFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPI  309 (338)
Q Consensus       232 ~~~~~~~gt~~y~aPE~~~~~--~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~  309 (338)
                        .+...|...|||||.+...  .|+.+|||||||++|||+.||+.||.....      +.+.+......+.      |.
T Consensus       224 --kT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~s------vfeql~~Vv~gdp------p~  289 (361)
T KOG1006|consen  224 --KTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWDS------VFEQLCQVVIGDP------PI  289 (361)
T ss_pred             --hhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchHHH------HHHHHHHHHcCCC------Ce
Confidence              2566799999999988543  389999999999999999999999986543      3343433332221      22


Q ss_pred             cccCcCCcccHHHHHHHHHHHHHccCCC
Q 038823          310 IVQDLSCTETEHQFQACARLTLECLNES  337 (338)
Q Consensus       310 l~~~~~~~~~~~~~~~~~~l~~~C~~~~  337 (338)
                      |..+..+   .+--..+...+..|+-+|
T Consensus       290 l~~~~~~---~~~s~~~~~fintCl~Kd  314 (361)
T KOG1006|consen  290 LLFDKEC---VHYSFSMVRFINTCLIKD  314 (361)
T ss_pred             ecCcccc---cccCHHHHHHHHHHhhcc
Confidence            2222111   112235777777887654

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=9.6e-37  Score=274.24  Aligned_cols=195  Identities=21%  Similarity=0.210  Sum_probs=172.4

Q ss_pred             CCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCC
Q 038823           76 RKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYT  152 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~g  152 (338)
                      .+.||+|.||+||-|+.  +|+.||||++.+.. ..+......+|+.+|.+++||.||.+--.|.+.+..+.|||-+. |
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~-G  647 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLH-G  647 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhc-c
Confidence            47899999999999999  89999999997653 44555788999999999999999999999999999999999998 5


Q ss_pred             CHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC---CceEEecCCCCcccCCCC
Q 038823          153 TLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE---NVAKLFDFSESISIPEGE  229 (338)
Q Consensus       153 sL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~---~~~kl~Dfg~a~~~~~~~  229 (338)
                      +..+.|-....   ..+++.....++.||+.||.|||   .++|+|+||||+|||+.+.   -++||+|||+|+.++...
T Consensus       648 DMLEMILSsEk---gRL~er~TkFlvtQIL~ALr~LH---~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEks  721 (888)
T KOG4236|consen  648 DMLEMILSSEK---GRLPERITKFLVTQILVALRYLH---FKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKS  721 (888)
T ss_pred             hHHHHHHHhhc---ccchHHHHHHHHHHHHHHHHHhh---hcceeeccCCchheeeccCCCCCceeeccccceeecchhh
Confidence            65555544332   26999999999999999999999   9999999999999999754   369999999999998764


Q ss_pred             ceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          230 THIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       230 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ..   ...+||+.|+|||++.+..|+..-|+||.||++|.-++|..||...
T Consensus       722 FR---rsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEd  769 (888)
T KOG4236|consen  722 FR---RSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNED  769 (888)
T ss_pred             hh---hhhcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCCCc
Confidence            43   6778999999999999999999999999999999999999999754

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=100.00  E-value=7.4e-37  Score=245.47  Aligned_cols=209  Identities=15%  Similarity=0.161  Sum_probs=175.9

Q ss_pred             HHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcc
Q 038823           66 LEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIP  142 (338)
Q Consensus        66 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~  142 (338)
                      ++...++......||+|++|.|-+-+.  +|...|+|.+......+..++.++|+++..+. .+|.+|.+||........
T Consensus        41 ~eV~ad~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdv  120 (282)
T KOG0984|consen   41 FEVPADDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDV  120 (282)
T ss_pred             cccchhhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccE
Confidence            455555666677899999999877777  99999999999887777778899999987655 699999999999999999


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSES  222 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a  222 (338)
                      |+.||.|+ .||+.+-.+--. ....+++..+-+|+..+..||.|||+  ...+||||+||+|||++.+|++|++|||.+
T Consensus       121 wIcME~M~-tSldkfy~~v~~-~g~~ipE~vlGkIa~Svv~al~~L~~--kL~vIHRDvKPsNiLIn~~GqVKiCDFGIs  196 (282)
T KOG0984|consen  121 WICMELMD-TSLDKFYRKVLK-KGGTIPEDVLGKIAVSVVHALEFLHS--KLSVIHRDVKPSNILINYDGQVKICDFGIS  196 (282)
T ss_pred             EEeHHHhh-hhHHHHHHHHHh-cCCcCchHHhhHhHHHHHHHHHHHHH--HhhhhhccCCcceEEEccCCcEEEcccccc
Confidence            99999999 788765543111 11279999999999999999999997  789999999999999999999999999999


Q ss_pred             cccCCCCceeeeecccccCCccccccccc----CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          223 ISIPEGETHIITRSRFGAWTYSAPEYKRG----GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       223 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~----~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ....++...   +...|...|||||.+..    ..|+.++||||||+++.||.+++.||+...
T Consensus       197 G~L~dSiAk---t~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~w~  256 (282)
T KOG0984|consen  197 GYLVDSIAK---TMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYESWG  256 (282)
T ss_pred             eeehhhhHH---HHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhccccccccC
Confidence            877554322   44568899999998753    359999999999999999999999998654

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=2.1e-35  Score=262.40  Aligned_cols=199  Identities=21%  Similarity=0.289  Sum_probs=171.5

Q ss_pred             CCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeec
Q 038823           73 YDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYG  149 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  149 (338)
                      |+..+.||+|++|.||+|+.  +++.+++|.+.... .....+.+.+|+.++++++|+||+++++++.+.+..++||||+
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~   80 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYC   80 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCc
Confidence            55678899999999999999  68999999998653 2333466788999999999999999999999999999999999


Q ss_pred             CCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCC
Q 038823          150 EYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGE  229 (338)
Q Consensus       150 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~  229 (338)
                      + ++|.+++.....    .+++..+..++.+++.||.|||   +.+++|+||+|+||++++++.++|+|||.+.......
T Consensus        81 ~-~~l~~~i~~~~~----~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~  152 (282)
T cd07829          81 D-MDLKKYLDKRPG----PLSPNLIKSIMYQLLRGLAYCH---SHRILHRDLKPQNILINRDGVLKLADFGLARAFGIPL  152 (282)
T ss_pred             C-cCHHHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChheEEEcCCCCEEEecCCcccccCCCc
Confidence            8 699999987642    6899999999999999999999   8999999999999999999999999999987765432


Q ss_pred             ceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          230 THIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       230 ~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ...  ....++..|+|||.+.+. .++.++||||||+++|||++|++||....
T Consensus       153 ~~~--~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~  203 (282)
T cd07829         153 RTY--THEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDS  203 (282)
T ss_pred             ccc--CccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCcc
Confidence            211  233457789999998776 78999999999999999999999997643

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=100.00  E-value=6e-36  Score=272.29  Aligned_cols=201  Identities=20%  Similarity=0.221  Sum_probs=173.7

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC-chHHHHHHHHHHHHhccCCcceeeeeeeeecCC-----cce
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS-DSACKFSINNIVYAAQMDHKHILKLIGCCLETP-----IPI  143 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-----~~~  143 (338)
                      +|.+.+.||.|++|.||+|..  ++..+++|++..... ....+.+.+|+.+++.++|+||+++++++...+     ..+
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVY   80 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceE
Confidence            478889999999999999998  588999999876542 344567899999999999999999999988765     789


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      +||||++ ++|.+++....     .+++..+..++.|++.||.|||   +.+|+|+||||.||+++.++.++|+|||.+.
T Consensus        81 lv~e~~~-~~l~~~l~~~~-----~l~~~~~~~i~~~l~~~l~~LH---~~gi~H~dlkp~nili~~~~~~~L~dfg~~~  151 (330)
T cd07834          81 IVTELME-TDLHKVIKSPQ-----PLTDDHIQYFLYQILRGLKYLH---SANVIHRDLKPSNILVNSNCDLKICDFGLAR  151 (330)
T ss_pred             EEecchh-hhHHHHHhCCC-----CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEcccCceE
Confidence            9999999 68999886653     6999999999999999999999   8999999999999999999999999999998


Q ss_pred             ccCCCCce-eeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          224 SIPEGETH-IITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       224 ~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ........ .......++..|+|||.+.+. .++.++|+||||+++|+|++|++||....
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~  211 (330)
T cd07834         152 GVDPDEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRD  211 (330)
T ss_pred             eecccccccccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCC
Confidence            76554310 111344578899999999887 78999999999999999999999997654

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=4.7e-36  Score=255.18  Aligned_cols=207  Identities=19%  Similarity=0.196  Sum_probs=175.4

Q ss_pred             CHHHHHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-Ccceeeeeeeeec
Q 038823           62 SAKELEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCLE  138 (338)
Q Consensus        62 ~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~  138 (338)
                      ++.++-+.|+     .+||+|+|+.|-.++.  ++..+|||++.+. ......+..+|++++.+.+ |+||++|+.+|.+
T Consensus        74 ~F~d~YkLt~-----e~LGeGAyasVqtcv~i~t~~EYAVKiidKq-~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEd  147 (463)
T KOG0607|consen   74 KFEDMYKLTS-----ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQ-PGHSRSRVFREVETFYQCQGHKNILQLIEFFED  147 (463)
T ss_pred             hHHHHHHhHH-----HHhcCccceeeeeeeeeccchhhhhhhhhcC-CchHHHHHHHHHHHHHHhcCCccHHHHHHHhcc
Confidence            3556655554     5699999999999998  8999999999877 5556688999999999997 9999999999999


Q ss_pred             CCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCc---eE
Q 038823          139 TPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENV---AK  215 (338)
Q Consensus       139 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~---~k  215 (338)
                      +..+|||||-|.||+|..+|.+..     .+++..+.++..+|+.||.|||   .++|.|||+||+|||-.+...   +|
T Consensus       148 d~~FYLVfEKm~GGplLshI~~~~-----~F~E~EAs~vvkdia~aLdFlH---~kgIAHRDlKPENiLC~~pn~vsPvK  219 (463)
T KOG0607|consen  148 DTRFYLVFEKMRGGPLLSHIQKRK-----HFNEREASRVVKDIASALDFLH---TKGIAHRDLKPENILCESPNKVSPVK  219 (463)
T ss_pred             cceEEEEEecccCchHHHHHHHhh-----hccHHHHHHHHHHHHHHHHHHh---hcCcccccCCccceeecCCCCcCcee
Confidence            999999999999999999998875     6999999999999999999999   999999999999999875544   89


Q ss_pred             EecCCCCcccCCCC-----ceeeeecccccCCcccccccc---c--CCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          216 LFDFSESISIPEGE-----THIITRSRFGAWTYSAPEYKR---G--GVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       216 l~Dfg~a~~~~~~~-----~~~~~~~~~gt~~y~aPE~~~---~--~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      |+||.+..-+....     ........+|+..|||||+..   +  ..|+.+.|.|||||++|-|++|.+||.....
T Consensus       220 iCDfDLgSg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg  296 (463)
T KOG0607|consen  220 ICDFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCG  296 (463)
T ss_pred             eeccccccccccCCCCCCCCCccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccC
Confidence            99998765443221     111224567899999999753   2  3489999999999999999999999986654

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=100.00  E-value=1.9e-35  Score=269.68  Aligned_cols=203  Identities=17%  Similarity=0.204  Sum_probs=167.6

Q ss_pred             cCCC-cCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchH-------------HHHHHHHHHHHhccCCcceeeeee
Q 038823           71 NNYD-ERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSA-------------CKFSINNIVYAAQMDHKHILKLIG  134 (338)
Q Consensus        71 ~~~~-~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~-------------~~~~~~e~~~l~~l~h~niv~l~~  134 (338)
                      ++|. +.+.||.|+||.||+|.+  +++.||+|++........             ...+.+|+.++++++|+||+++++
T Consensus         8 ~ry~~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~   87 (335)
T PTZ00024          8 ERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVD   87 (335)
T ss_pred             cchhhhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeE
Confidence            3454 457799999999999998  788999999865422110             124678999999999999999999


Q ss_pred             eeecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCce
Q 038823          135 CCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVA  214 (338)
Q Consensus       135 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~  214 (338)
                      ++...+..++||||+. |+|.+++....     .+++.....++.|++.||.|||   +.+++|+||+|+||+++.++.+
T Consensus        88 ~~~~~~~~~lv~e~~~-~~l~~~l~~~~-----~~~~~~~~~~~~ql~~aL~~LH---~~~i~H~dl~~~nill~~~~~~  158 (335)
T PTZ00024         88 VYVEGDFINLVMDIMA-SDLKKVVDRKI-----RLTESQVKCILLQILNGLNVLH---KWYFMHRDLSPANIFINSKGIC  158 (335)
T ss_pred             EEecCCcEEEEEeccc-cCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---hCCeecccccHHHeEECCCCCE
Confidence            9999999999999998 69999987643     5899999999999999999999   8999999999999999999999


Q ss_pred             EEecCCCCcccCCCCc------------eeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          215 KLFDFSESISIPEGET------------HIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       215 kl~Dfg~a~~~~~~~~------------~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      +|+|||.+........            ........++..|+|||.+.+. .++.++|+||||+++|+|+||++||....
T Consensus       159 kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~  238 (335)
T PTZ00024        159 KIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGEN  238 (335)
T ss_pred             EECCccceeecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            9999999876541110            0011233467889999998764 47899999999999999999999998654


Q ss_pred             C
Q 038823          282 T  282 (338)
Q Consensus       282 ~  282 (338)
                      .
T Consensus       239 ~  239 (335)
T PTZ00024        239 E  239 (335)
T ss_pred             H
Confidence            3

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=100.00  E-value=2.5e-35  Score=259.11  Aligned_cols=201  Identities=17%  Similarity=0.154  Sum_probs=165.8

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC----CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY----SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      .|.+.+.||+|+||.||++.+  .+..+++|..+...    .......+..|+.++++++||||+++++++.+.+..++|
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCII   80 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEE
Confidence            477889999999999999998  34445555554321    223345577899999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||+++++|.+++....... ..+++..++.++.|++.||.|||   +.+++|+||+|+||++++ +.++|+|||.+...
T Consensus        81 ~e~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lH---~~~i~h~~l~~~nili~~-~~~~l~d~g~~~~~  155 (260)
T cd08222          81 TEYCEGRDLDCKLEELKHTG-KTLSENQVCEWFIQLLLGVHYMH---QRRILHRDLKAKNIFLKN-NLLKIGDFGVSRLL  155 (260)
T ss_pred             EEeCCCCCHHHHHHHHhhcc-cccCHHHHHHHHHHHHHHHHHHH---HcCccccCCChhheEeec-CCEeecccCceeec
Confidence            99999999999886432111 26899999999999999999999   899999999999999975 56999999998766


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ......  .....|+..|+|||.+.+..++.++|+||||+++|+|++|..||..
T Consensus       156 ~~~~~~--~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~  207 (260)
T cd08222         156 MGSCDL--ATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEG  207 (260)
T ss_pred             CCCccc--ccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            443221  1344578899999999888889999999999999999999999964

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.4e-34  Score=252.49  Aligned_cols=192  Identities=21%  Similarity=0.225  Sum_probs=169.1

Q ss_pred             cccCCCceEEEEEE--CCeEEEEEEeCcCCC--chHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCCCH
Q 038823           79 IKQDSTYKLYKGFW--QERLISVMKYNESYS--DSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTL  154 (338)
Q Consensus        79 lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL  154 (338)
                      ||.|+||.||++..  ++..+++|.+.....  ......+.+|+.++++++|+||+++++.+..++..++||||+++++|
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L   80 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGEL   80 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcH
Confidence            69999999999998  588999999876532  23456789999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCceeee
Q 038823          155 RDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIIT  234 (338)
Q Consensus       155 ~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~  234 (338)
                      .+++....     .+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||.+........  ..
T Consensus        81 ~~~l~~~~-----~l~~~~~~~~~~qi~~~l~~lh---~~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~--~~  150 (250)
T cd05123          81 FSHLSKEG-----RFSEERARFYAAEIVLALEYLH---SLGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGS--RT  150 (250)
T ss_pred             HHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCcceEEEcCCCcEEEeecCcceecccCCC--cc
Confidence            99997654     5899999999999999999999   89999999999999999999999999999877654321  11


Q ss_pred             ecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          235 RSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       235 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ....++..|+|||...+...+.++|+||||+++|+|++|+.||...
T Consensus       151 ~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~  196 (250)
T cd05123         151 NTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAE  196 (250)
T ss_pred             cCCcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence            4456788999999998888899999999999999999999999743

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=100.00  E-value=5.3e-36  Score=252.81  Aligned_cols=200  Identities=18%  Similarity=0.181  Sum_probs=172.1

Q ss_pred             HhhcCCCcC-CccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-Ccceeeeeeeeec----C
Q 038823           68 IATNNYDER-KFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCLE----T  139 (338)
Q Consensus        68 ~~~~~~~~~-~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~----~  139 (338)
                      ..+++|++. ++||-|-.|.|-.+..  +++.+|+|++...      ....+|+++--..+ |+|||.+++++..    .
T Consensus        58 ~itedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds------~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~r  131 (400)
T KOG0604|consen   58 SITEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDS------PKARREVELHWMASGHPHIVSIIDVYENSYQGR  131 (400)
T ss_pred             cchhhheehhhhhccccCCceEEEEeccchhhhHHHHHhcC------HHHHhHhhhhhhhcCCCceEEeehhhhhhccCc
Confidence            356778764 6899999999999988  8899999998765      56778888766664 9999999998864    3


Q ss_pred             CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC---CCceEE
Q 038823          140 PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE---ENVAKL  216 (338)
Q Consensus       140 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~---~~~~kl  216 (338)
                      ..+.+|||.|+||.|++.+...+.   ..++++++..|..||+.|+.|||   +.+|.||||||+|+|...   |-.+||
T Consensus       132 kcLLiVmE~meGGeLfsriq~~g~---~afTErea~eI~~qI~~Av~~lH---~~nIAHRDlKpENLLyt~t~~na~lKL  205 (400)
T KOG0604|consen  132 KCLLIVMECMEGGELFSRIQDRGD---QAFTEREASEIMKQIGLAVRYLH---SMNIAHRDLKPENLLYTTTSPNAPLKL  205 (400)
T ss_pred             eeeEeeeecccchHHHHHHHHccc---ccchHHHHHHHHHHHHHHHHHHH---hcchhhccCChhheeeecCCCCcceEe
Confidence            457899999999999999988765   46999999999999999999999   999999999999999964   446999


Q ss_pred             ecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          217 FDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       217 ~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      +|||+|+........   ....-|+.|.|||++....|+...|+||+||++|-|++|.+||.+...
T Consensus       206 tDfGFAK~t~~~~~L---~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg  268 (400)
T KOG0604|consen  206 TDFGFAKETQEPGDL---MTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHG  268 (400)
T ss_pred             cccccccccCCCccc---cCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCC
Confidence            999999876543222   456689999999999999999999999999999999999999987554

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=100.00  E-value=2.2e-35  Score=269.97  Aligned_cols=201  Identities=18%  Similarity=0.234  Sum_probs=165.8

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecC--------
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLET--------  139 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--------  139 (338)
                      ..+|...+.||.|+||.||+|..  ++..|++|.+.... ....+.+.+|+.++++++|+||+++++++...        
T Consensus         4 ~~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~-~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~   82 (342)
T cd07854           4 GSRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTD-PQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDV   82 (342)
T ss_pred             CcceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCC-CchHHHHHHHHHHHHhcCCCcchhhHhhhccccccccccc
Confidence            36788999999999999999998  68899999986553 34456788999999999999999999876543        


Q ss_pred             ------CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC-CC
Q 038823          140 ------PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE-EN  212 (338)
Q Consensus       140 ------~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~-~~  212 (338)
                            ...++||||++ ++|.+++...      .+++..+..++.|++.||.|||   +.+++||||||+||+++. ++
T Consensus        83 ~~~~~~~~~~lv~e~~~-~~L~~~~~~~------~l~~~~~~~~~~qi~~aL~~LH---~~givH~dikp~Nili~~~~~  152 (342)
T cd07854          83 GSLTELNSVYIVQEYME-TDLANVLEQG------PLSEEHARLFMYQLLRGLKYIH---SANVLHRDLKPANVFINTEDL  152 (342)
T ss_pred             ccccccceEEEEeeccc-ccHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEcCCCc
Confidence                  34789999998 6998888543      5889999999999999999999   899999999999999974 56


Q ss_pred             ceEEecCCCCcccCCCCcee-eeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          213 VAKLFDFSESISIPEGETHI-ITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       213 ~~kl~Dfg~a~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      .+||+|||.+.......... ......++..|+|||.+.. ..++.++|||||||++|+|++|+.||....
T Consensus       153 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~  223 (342)
T cd07854         153 VLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAH  223 (342)
T ss_pred             eEEECCcccceecCCccccccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            78999999987654321111 1123357889999998654 458899999999999999999999997544

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=100.00  E-value=2.5e-35  Score=269.73  Aligned_cols=199  Identities=19%  Similarity=0.253  Sum_probs=170.4

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCc---
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPI---  141 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~---  141 (338)
                      ...++|+..+.||+|++|.||+|.+  ++..|++|.+.... .......+.+|+.++++++|+||+++++++...+.   
T Consensus        12 ~~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   91 (343)
T cd07851          12 EVPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLED   91 (343)
T ss_pred             cccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccccc
Confidence            4567899999999999999999999  67899999987542 23334667889999999999999999998876554   


Q ss_pred             ---ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEec
Q 038823          142 ---PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFD  218 (338)
Q Consensus       142 ---~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~D  218 (338)
                         .++|+||+. ++|.+++...      .+++..+..++.|++.||.|||   +.+|+|+||+|+||+++.++.++|+|
T Consensus        92 ~~~~~lv~e~~~-~~L~~~~~~~------~l~~~~~~~~~~ql~~aL~~LH---~~gi~H~dlkp~Nill~~~~~~kL~d  161 (343)
T cd07851          92 FQDVYLVTHLMG-ADLNNIVKCQ------KLSDDHIQFLVYQILRGLKYIH---SAGIIHRDLKPSNIAVNEDCELKILD  161 (343)
T ss_pred             cccEEEEEecCC-CCHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCCEEEcc
Confidence               899999985 7999988652      5899999999999999999999   89999999999999999999999999


Q ss_pred             CCCCcccCCCCceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          219 FSESISIPEGETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       219 fg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ||++.......     ....++..|+|||.+.+ ..++.++||||||+++|+|+||+.||....
T Consensus       162 fg~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~~  220 (343)
T cd07851         162 FGLARHTDDEM-----TGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSD  220 (343)
T ss_pred             ccccccccccc-----cCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC
Confidence            99987664431     33457888999998865 357899999999999999999999997543

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=100.00  E-value=1.9e-34  Score=262.78  Aligned_cols=200  Identities=20%  Similarity=0.209  Sum_probs=165.6

Q ss_pred             CCCcCCccccCCCceEEEEEE--C--CeEEEEEEeCcCCC-chHHHHHHHHHHHHhcc-CCcceeeeeeeeecC----Cc
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--Q--ERLISVMKYNESYS-DSACKFSINNIVYAAQM-DHKHILKLIGCCLET----PI  141 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~--~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~----~~  141 (338)
                      +|++.+.||+|+||.||++..  .  +..+|+|.+..... ....+.+.+|+.++.++ .|+||+++++++...    ..
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~   80 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNE   80 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCc
Confidence            477788999999999999998  4  67899999875432 22346788999999999 499999999875432    35


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCC
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSE  221 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~  221 (338)
                      .++++||+. ++|.+++....     .+++..+..++.|++.||.|||   ..+++||||||+||+++.++.+||+|||.
T Consensus        81 ~~~~~e~~~-~~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH---~~givH~dlkp~Nili~~~~~~kl~Dfg~  151 (332)
T cd07857          81 LYLYEELME-ADLHQIIRSGQ-----PLTDAHFQSFIYQILCGLKYIH---SANVLHRDLKPGNLLVNADCELKICDFGL  151 (332)
T ss_pred             EEEEEeccc-CCHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHeEEcCCCCEEeCcCCC
Confidence            788899887 79999886543     6899999999999999999999   89999999999999999999999999999


Q ss_pred             CcccCCCCcee--eeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          222 SISIPEGETHI--ITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       222 a~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      +..........  ......|+..|+|||++.+ ..++.++|+||||+++|+|++|++||...
T Consensus       152 a~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~  213 (332)
T cd07857         152 ARGFSENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGK  213 (332)
T ss_pred             ceecccccccccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCC
Confidence            97654332211  1133468999999998765 45899999999999999999999999754

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.7e-35  Score=271.09  Aligned_cols=217  Identities=15%  Similarity=0.140  Sum_probs=186.1

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      ..-|...+.||-|+||.|.++.-  +...+|.|.+.+..  ..........|-.||..-..+-||+||..|.+++.+|+|
T Consensus       628 KSmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYFV  707 (1034)
T KOG0608|consen  628 KSMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFV  707 (1034)
T ss_pred             ccceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceEEE
Confidence            34577889999999999999876  66678999987653  345567788999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |+|++||++-.+|-+.+     .|.+..+..++.++..|+++.|   ..|+|||||||.|||||.+|++||+|||+++-.
T Consensus       708 MdYIPGGDmMSLLIrmg-----IFeE~LARFYIAEltcAiesVH---kmGFIHRDiKPDNILIDrdGHIKLTDFGLCTGf  779 (1034)
T KOG0608|consen  708 MDYIPGGDMMSLLIRMG-----IFEEDLARFYIAELTCAIESVH---KMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGF  779 (1034)
T ss_pred             EeccCCccHHHHHHHhc-----cCHHHHHHHHHHHHHHHHHHHH---hccceecccCccceEEccCCceeeeeccccccc
Confidence            99999999999998775     6999999999999999999999   999999999999999999999999999997533


Q ss_pred             C---------CCCce-------------------------------eeeecccccCCcccccccccCCCCccchHHHHHH
Q 038823          226 P---------EGETH-------------------------------IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFST  265 (338)
Q Consensus       226 ~---------~~~~~-------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv  265 (338)
                      .         .+...                               ......+||..|+|||++....++..+|+||.||
T Consensus       780 RWTHdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdwws~gv  859 (1034)
T KOG0608|consen  780 RWTHDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWWSVGV  859 (1034)
T ss_pred             eeccccccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchhhHhhH
Confidence            1         00000                               0012457999999999999999999999999999


Q ss_pred             HHHHHHhCCCCcCCccCCcccccHHHHHH
Q 038823          266 VLLELLTGQSTRDLLRTHGSVRHLIEYLK  294 (338)
Q Consensus       266 ~l~el~tG~~p~~~~~~~~~~~~l~~~~~  294 (338)
                      |||||+.|++||-...+.+....+.+|-.
T Consensus       860 il~em~~g~~pf~~~tp~~tq~kv~nw~~  888 (1034)
T KOG0608|consen  860 ILYEMLVGQPPFLADTPGETQYKVINWRN  888 (1034)
T ss_pred             HHHHHhhCCCCccCCCCCcceeeeeehhh
Confidence            99999999999998888777777776644

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=100.00  E-value=1.1e-34  Score=251.84  Aligned_cols=179  Identities=18%  Similarity=0.109  Sum_probs=154.7

Q ss_pred             CCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCCCHHHhhh
Q 038823           82 DSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIF  159 (338)
Q Consensus        82 G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~  159 (338)
                      |.+|.||++.+  +++.+|+|.+....      .+.+|...+....||||+++++++.+.+..++||||+++|+|.+++.
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~   77 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSS------EYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHIS   77 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchh------hhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHH
Confidence            89999999999  88899999987641      23345555556679999999999999999999999999999999987


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCceeeeecccc
Q 038823          160 GAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG  239 (338)
Q Consensus       160 ~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~g  239 (338)
                      ...     .+++..+..++.|++.||.|||   +.+++||||||+||+++.++.++++|||.+.......     ....+
T Consensus        78 ~~~-----~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~-----~~~~~  144 (237)
T cd05576          78 KFL-----NIPEECVKRWAAEMVVALDALH---REGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSC-----DGEAV  144 (237)
T ss_pred             Hhc-----CCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEEcCCCCEEEecccchhcccccc-----ccCCc
Confidence            653     5899999999999999999999   8999999999999999999999999999876554321     23345


Q ss_pred             cCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          240 AWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       240 t~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      +..|+|||......++.++|+||+|+++|||++|+.|+..
T Consensus       145 ~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~~~~  184 (237)
T cd05576         145 ENMYCAPEVGGISEETEACDWWSLGAILFELLTGKTLVEC  184 (237)
T ss_pred             CccccCCcccCCCCCCchhhHHHHHHHHHHHHHCcchhhc
Confidence            6789999999888899999999999999999999988763

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-35  Score=251.45  Aligned_cols=222  Identities=19%  Similarity=0.244  Sum_probs=188.3

Q ss_pred             HHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCC
Q 038823           66 LEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQM-DHKHILKLIGCCLETP  140 (338)
Q Consensus        66 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~  140 (338)
                      +....++|.....||+|+|+.|..+..  +.+.+|+|++++..  .+..+.....|-.+..+- +||.+|-+..||.+.+
T Consensus       245 ~~l~l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtes  324 (593)
T KOG0695|consen  245 QGLGLQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTES  324 (593)
T ss_pred             cccccccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccc
Confidence            345567899999999999999999998  78899999998653  445567778888887776 5999999999999999


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                      .+++|.||++||+|--++.+..     .++++.+..+..+|+-||.|||   +.+||.||||..|+|+|..|++||+|+|
T Consensus       325 rlffvieyv~ggdlmfhmqrqr-----klpeeharfys~ei~lal~flh---~rgiiyrdlkldnvlldaeghikltdyg  396 (593)
T KOG0695|consen  325 RLFFVIEYVNGGDLMFHMQRQR-----KLPEEHARFYSAEICLALNFLH---ERGIIYRDLKLDNVLLDAEGHIKLTDYG  396 (593)
T ss_pred             eEEEEEEEecCcceeeehhhhh-----cCcHHHhhhhhHHHHHHHHHHh---hcCeeeeeccccceEEccCCceeecccc
Confidence            9999999999999987776654     6999999999999999999999   9999999999999999999999999999


Q ss_pred             CCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHHHHHHH
Q 038823          221 ESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYL  297 (338)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~~~~~~  297 (338)
                      +++..-.+...  ++...||+.|+|||++.+..|...+|+|++||+++||+.|+.||+...-.....+..+++-..+
T Consensus       397 mcke~l~~gd~--tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdivgm~n~d~ntedylfqvi  471 (593)
T KOG0695|consen  397 MCKEGLGPGDT--TSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNPDMNTEDYLFQVI  471 (593)
T ss_pred             hhhcCCCCCcc--cccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcceecCCCcccchhHHHHHHH
Confidence            99865433222  2677899999999999999999999999999999999999999985443233344444444333

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-36  Score=269.31  Aligned_cols=203  Identities=14%  Similarity=0.127  Sum_probs=183.2

Q ss_pred             cCCCcCCccccCCCceEEEEEECCeE--EEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFWQERL--ISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~~~~~--vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      .++.....||-||||.|=+...+++.  +|+|++++..  .....++...|-++|...+.|.||++|-.|.+....|+.|
T Consensus       420 ~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYmLm  499 (732)
T KOG0614|consen  420 SDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYMLM  499 (732)
T ss_pred             hhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhhhH
Confidence            34556678999999999999885444  7888887653  4556688999999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      |-|-||.|...+.+.+     .|+..+...++..+++|+.|||   .++||+|||||+|.++|.+|-+||.|||+|+.+.
T Consensus       500 EaClGGElWTiLrdRg-----~Fdd~tarF~~acv~EAfeYLH---~k~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~  571 (732)
T KOG0614|consen  500 EACLGGELWTILRDRG-----SFDDYTARFYVACVLEAFEYLH---RKGIIYRDLKPENLLLDNRGYLKLVDFGFAKKIG  571 (732)
T ss_pred             HhhcCchhhhhhhhcC-----CcccchhhhhHHHHHHHHHHHH---hcCceeccCChhheeeccCCceEEeehhhHHHhc
Confidence            9999999999998876     5999999999999999999999   9999999999999999999999999999999988


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccCCc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHG  284 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~  284 (338)
                      .+...   ....||+.|.|||++.+...+.++|.||||+++|||+||++||....+..
T Consensus       572 ~g~KT---wTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~dpmk  626 (732)
T KOG0614|consen  572 SGRKT---WTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVDPMK  626 (732)
T ss_pred             cCCce---eeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCchHH
Confidence            77654   67889999999999999999999999999999999999999999876643

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.3e-35  Score=287.34  Aligned_cols=198  Identities=23%  Similarity=0.311  Sum_probs=165.0

Q ss_pred             HHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCC----
Q 038823           67 EIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETP----  140 (338)
Q Consensus        67 ~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~----  140 (338)
                      .+..++|....+||+||||.||++++  +|+.+|||++....+......+.+|+.+|++|+|||||+++..+.+..    
T Consensus       475 SRY~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~~~  554 (1351)
T KOG1035|consen  475 SRYLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAWVESTAELT  554 (1351)
T ss_pred             hhHhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCccc
Confidence            45677899999999999999999999  999999999987766666788999999999999999999987653210    


Q ss_pred             --------------------------------------------------------------------------------
Q 038823          141 --------------------------------------------------------------------------------  140 (338)
Q Consensus       141 --------------------------------------------------------------------------------  140 (338)
                                                                                                      
T Consensus       555 ~~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~tS  634 (1351)
T KOG1035|consen  555 VLEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSNTS  634 (1351)
T ss_pred             cccccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCccccccccccccccccc
Confidence                                                                                            


Q ss_pred             -----------------------------------cceEEEeecCCCCHHHhhhcCCCCCCCCC-CHHHHHHHHHHHHHH
Q 038823          141 -----------------------------------IPILVFEYGEYTTLRDRIFGAPQPHFEPL-LLKHRLKVAMGIAHA  184 (338)
Q Consensus       141 -----------------------------------~~~lv~e~~~~gsL~~~l~~~~~~~~~~l-~~~~~~~i~~~i~~~  184 (338)
                                                         .+|+-||||+...|.+++.++..     . .....++++++|+.|
T Consensus       635 ~~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~-----~~~~d~~wrLFreIlEG  709 (1351)
T KOG1035|consen  635 DSEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHF-----NSQRDEAWRLFREILEG  709 (1351)
T ss_pred             ccCCccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhccc-----chhhHHHHHHHHHHHHH
Confidence                                               03677999998777777766532     2 467789999999999


Q ss_pred             HHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC----C------------CCceeeeecccccCCcccccc
Q 038823          185 LAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP----E------------GETHIITRSRFGAWTYSAPEY  248 (338)
Q Consensus       185 l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~----~------------~~~~~~~~~~~gt~~y~aPE~  248 (338)
                      |.|+|   +.+||||||||.|||++++..+||+|||+|+...    .            +......+..+||.-|+|||.
T Consensus       710 LaYIH---~~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEl  786 (1351)
T KOG1035|consen  710 LAYIH---DQGIIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPEL  786 (1351)
T ss_pred             HHHHH---hCceeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHH
Confidence            99999   9999999999999999999999999999998721    0            001112256789999999999


Q ss_pred             cccCC---CCccchHHHHHHHHHHHHh
Q 038823          249 KRGGV---FNEKLDVYTFSTVLLELLT  272 (338)
Q Consensus       249 ~~~~~---~~~~~Dv~s~Gv~l~el~t  272 (338)
                      +.+..   |+.|+|+||+||+++||+.
T Consensus       787 l~~~~~~~Yn~KiDmYSLGIVlFEM~y  813 (1351)
T KOG1035|consen  787 LSDTSSNKYNSKIDMYSLGIVLFEMLY  813 (1351)
T ss_pred             hcccccccccchhhhHHHHHHHHHHhc
Confidence            97654   9999999999999999985

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=100.00  E-value=9.5e-36  Score=252.49  Aligned_cols=207  Identities=18%  Similarity=0.212  Sum_probs=175.2

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE----C--CeEEEEEEeCcCCCc-hHHHHHHHHHHHHhccCCcceeeeeeeeec-CC
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW----Q--ERLISVMKYNESYSD-SACKFSINNIVYAAQMDHKHILKLIGCCLE-TP  140 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~----~--~~~vaik~~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~l~~~~~~-~~  140 (338)
                      ....|+....||+|.||.||+|..    +  +..+|+|+++...+. .-.....+|+.+++.++|+|++.|..++.. +.
T Consensus        22 ~l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~  101 (438)
T KOG0666|consen   22 DLFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDK  101 (438)
T ss_pred             HHHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCc
Confidence            345688889999999999999976    2  236899999755321 223567899999999999999999999887 77


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC----CceEE
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE----NVAKL  216 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~----~~~kl  216 (338)
                      ..++++||.+ -+|..+|..+.......++...+..|+.||+.|+.|||   +.=|+||||||+|||+..+    |.+||
T Consensus       102 ~v~l~fdYAE-hDL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH---~NWvlHRDLKPaNIlvmgdgperG~VKI  177 (438)
T KOG0666|consen  102 KVWLLFDYAE-HDLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLH---SNWVLHRDLKPANILVMGDGPERGRVKI  177 (438)
T ss_pred             eEEEEehhhh-hhHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHh---hhheeeccCCcceEEEeccCCccCeeEe
Confidence            8999999999 69999998766555568999999999999999999999   8899999999999999877    89999


Q ss_pred             ecCCCCcccCCCCcee-eeecccccCCcccccccccCC-CCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          217 FDFSESISIPEGETHI-ITRSRFGAWTYSAPEYKRGGV-FNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       217 ~Dfg~a~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      +|||+++.+...-... .....+-|..|.|||.+.+.. |+.+.||||.|||+.||+|-++-|..
T Consensus       178 aDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g  242 (438)
T KOG0666|consen  178 ADLGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKG  242 (438)
T ss_pred             ecccHHHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCccccc
Confidence            9999999887654332 225566899999999988754 99999999999999999999887754

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=100.00  E-value=7.2e-34  Score=279.96  Aligned_cols=145  Identities=21%  Similarity=0.129  Sum_probs=131.1

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++|.+.+.||+|+||.||+|.+  +++.||+|++....  .......+..|+.++..++|+||+++++++...+..++||
T Consensus         4 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lVm   83 (669)
T cd05610           4 EEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLVM   83 (669)
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEEE
Confidence            5688899999999999999999  68899999987542  2334567889999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      ||+.+++|.+++....     .+++..++.++.||+.||.|||   ..+|+||||||+|||++.++.+||+|||+++
T Consensus        84 Ey~~g~~L~~li~~~~-----~l~~~~~~~i~~qil~aL~yLH---~~gIiHrDLKP~NILl~~~g~vkL~DFGls~  152 (669)
T cd05610          84 EYLIGGDVKSLLHIYG-----YFDEEMAVKYISEVALALDYLH---RHGIIHRDLKPDNMLISNEGHIKLTDFGLSK  152 (669)
T ss_pred             eCCCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCccHHHEEEcCCCCEEEEeCCCCc
Confidence            9999999999997653     5889999999999999999999   8899999999999999999999999999875

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-35  Score=260.38  Aligned_cols=206  Identities=22%  Similarity=0.257  Sum_probs=173.4

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcC--CC----chHHHHHHHHHHHHhccCCcceeeeeeeee-cC
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNES--YS----DSACKFSINNIVYAAQMDHKHILKLIGCCL-ET  139 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~--~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~-~~  139 (338)
                      ..+.|-...+||+|||+.||+|.+  .++.||+|+-...  +.    ....+...+|..+-+.|.||.||++|+++. +.
T Consensus       461 Ln~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDt  540 (775)
T KOG1151|consen  461 LNDRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDT  540 (775)
T ss_pred             hHHHHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeecc
Confidence            344566778999999999999998  7788899886532  21    223566789999999999999999999985 66


Q ss_pred             CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC---CCceEE
Q 038823          140 PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE---ENVAKL  216 (338)
Q Consensus       140 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~---~~~~kl  216 (338)
                      +.++-|+|||+|.+|+-+|..+.     .+++..+..|+.||+.||.||..- +.+|||-||||.|||+-+   -|.+||
T Consensus       541 dsFCTVLEYceGNDLDFYLKQhk-----lmSEKEARSIiMQiVnAL~YLNEi-kpPIIHYDLKPgNILLv~GtacGeIKI  614 (775)
T KOG1151|consen  541 DSFCTVLEYCEGNDLDFYLKQHK-----LMSEKEARSIIMQIVNALKYLNEI-KPPIIHYDLKPGNILLVNGTACGEIKI  614 (775)
T ss_pred             ccceeeeeecCCCchhHHHHhhh-----hhhHHHHHHHHHHHHHHHHHHhcc-CCCeeeeccCCccEEEecCcccceeEe
Confidence            78899999999999999998775     589999999999999999999854 679999999999999953   478999


Q ss_pred             ecCCCCcccCCCCce-----eeeecccccCCcccccccccC----CCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          217 FDFSESISIPEGETH-----IITRSRFGAWTYSAPEYKRGG----VFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       217 ~Dfg~a~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~----~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      +|||+++.+......     ..+....||..|++||.+.-+    .++.|+||||.|||+|+.+.|+.||...
T Consensus       615 TDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhn  687 (775)
T KOG1151|consen  615 TDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHN  687 (775)
T ss_pred             eecchhhhccCCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCc
Confidence            999999988654322     234667899999999988654    4889999999999999999999999753

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=1e-34  Score=228.56  Aligned_cols=199  Identities=16%  Similarity=0.226  Sum_probs=173.1

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCch-HHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDS-ACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~-~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      +|...++||+|.||+||+|++  +...||+|......++. ......+|+-+|+.++|+|||++++..-.+..+-+|+||
T Consensus         3 ~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe~   82 (292)
T KOG0662|consen    3 KYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEF   82 (292)
T ss_pred             chHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHH
Confidence            455667899999999999999  77889999987654333 245678999999999999999999999989999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      |+ .+|..+....+.    .++.+....++.|+++||.|+|   +.++.|||+||.|+|++.+|.+|++|||+++..+-.
T Consensus        83 cd-qdlkkyfdslng----~~d~~~~rsfmlqllrgl~fch---shnvlhrdlkpqnllin~ngelkladfglarafgip  154 (292)
T KOG0662|consen   83 CD-QDLKKYFDSLNG----DLDPEIVRSFMLQLLRGLGFCH---SHNVLHRDLKPQNLLINRNGELKLADFGLARAFGIP  154 (292)
T ss_pred             hh-HHHHHHHHhcCC----cCCHHHHHHHHHHHHhhhhhhh---hhhhhhccCCcceEEeccCCcEEecccchhhhcCCc
Confidence            99 699888877664    7999999999999999999999   999999999999999999999999999999988765


Q ss_pred             CceeeeecccccCCcccccccccCC-CCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGV-FNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      ....  +..+-|..|.+|.++.+.. |+...|+||.||++.|+.. |++.|+..
T Consensus       155 vrcy--saevvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplfpg~  206 (292)
T KOG0662|consen  155 VRCY--SAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGN  206 (292)
T ss_pred             eEee--eceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCC
Confidence            4332  4556789999999988765 8999999999999999988 67667653

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-33  Score=257.57  Aligned_cols=195  Identities=20%  Similarity=0.177  Sum_probs=167.4

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcceEE
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv  145 (338)
                      ++..|.....+|.|+|+.|-.+..  +++..++|++.+...     ...+|+.++... +|+||+++.+.+.++...|+|
T Consensus       320 ~~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~~-----~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v  394 (612)
T KOG0603|consen  320 FTESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRAD-----DNQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLV  394 (612)
T ss_pred             cchhhccccccCCCCccceeeeeccccccchhheecccccc-----ccccccchhhhhcCCCcceeecceecCCceeeee
Confidence            366788888899999999999998  888999999987622     223566555554 699999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceee-CCCCceEEecCCCCcc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILF-NEENVAKLFDFSESIS  224 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill-~~~~~~kl~Dfg~a~~  224 (338)
                      ||.+.|+-|.+.+.....     +. ..+..|+.+|+.|+.|||   .+++||||+||+|||+ ++.++++|+|||.++.
T Consensus       395 ~e~l~g~ell~ri~~~~~-----~~-~e~~~w~~~lv~Av~~LH---~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~  465 (612)
T KOG0603|consen  395 MELLDGGELLRRIRSKPE-----FC-SEASQWAAELVSAVDYLH---EQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSE  465 (612)
T ss_pred             ehhccccHHHHHHHhcch-----hH-HHHHHHHHHHHHHHHHHH---hcCeeecCCChhheeecCCCCcEEEEEechhhh
Confidence            999999999888876542     33 778889999999999999   9999999999999999 6899999999999988


Q ss_pred             cCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          225 IPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       225 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      .....     ....-|..|.|||+.....+++++||||||++||+|++|+.||.....
T Consensus       466 ~~~~~-----~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~  518 (612)
T KOG0603|consen  466 LERSC-----DTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPA  518 (612)
T ss_pred             Cchhh-----cccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCc
Confidence            76651     334568899999999988899999999999999999999999986544

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=5.1e-33  Score=263.39  Aligned_cols=210  Identities=16%  Similarity=0.197  Sum_probs=180.0

Q ss_pred             HHHHHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-Ccceeeeeeeeec-
Q 038823           63 AKELEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCLE-  138 (338)
Q Consensus        63 ~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~-  138 (338)
                      ++.+...++-|.+...||.|.+|.||+++.  +++.+|+|+.....+..  +++..|.++|+... |||++.+||++.. 
T Consensus        11 ~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~d--eEiE~eynil~~~~~hpnv~~fyg~~~k~   88 (953)
T KOG0587|consen   11 LSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDEE--EEIELEYNMLKKYSHHPNVATFYGAFIKK   88 (953)
T ss_pred             hhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCcccc--HHHHHHHHHHHhccCCCCcceEEEEEEEe
Confidence            344556677788999999999999999998  88889999987664433  55677889998884 9999999999863 


Q ss_pred             ----CCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCce
Q 038823          139 ----TPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVA  214 (338)
Q Consensus       139 ----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~  214 (338)
                          ++.+|||||||.+||.-|++++...   ..+.|..+..|+.+++.||.+||   ...++|||||-.|||++.++.+
T Consensus        89 ~~~~~DqLWLVMEfC~gGSVTDLVKn~~g---~rl~E~~IaYI~re~lrgl~HLH---~nkviHRDikG~NiLLT~e~~V  162 (953)
T KOG0587|consen   89 DPGNGDQLWLVMEFCGGGSVTDLVKNTKG---NRLKEEWIAYILREILRGLAHLH---NNKVIHRDIKGQNVLLTENAEV  162 (953)
T ss_pred             cCCCCCeEEEEeeccCCccHHHHHhhhcc---cchhhHHHHHHHHHHHHHHHHHh---hcceeeecccCceEEEeccCcE
Confidence                5679999999999999999988763   36999999999999999999999   8999999999999999999999


Q ss_pred             EEecCCCCcccCCCCceeeeecccccCCcccccccccC-----CCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          215 KLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGG-----VFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       215 kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ||.|||.+........  ......||+.|||||++...     .|+..+|+||||++..||.-|.+|+..+.+
T Consensus       163 KLvDFGvSaQldsT~g--rRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~DmHP  233 (953)
T KOG0587|consen  163 KLVDFGVSAQLDSTVG--RRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDMHP  233 (953)
T ss_pred             EEeeeeeeeeeecccc--cccCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCcch
Confidence            9999999877654322  22566799999999998654     377889999999999999999999987776

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=100.00  E-value=5.2e-32  Score=234.27  Aligned_cols=186  Identities=25%  Similarity=0.286  Sum_probs=165.1

Q ss_pred             CCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCCCHHHhhhc
Q 038823           83 STYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFG  160 (338)
Q Consensus        83 ~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~  160 (338)
                      +||.||+|..  ++..+++|.+.........+.+.+|+..+++++|+||+++++++......++++||+++++|.+++..
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~   80 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKK   80 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHh
Confidence            5899999999  57899999997664333257899999999999999999999999998999999999999999999876


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCceeeeeccccc
Q 038823          161 APQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA  240 (338)
Q Consensus       161 ~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt  240 (338)
                      ..     .+++..+..++.+++.++.|||   ..+++|+||+|.||+++.++.++|+|||.+........   .....++
T Consensus        81 ~~-----~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~~---~~~~~~~  149 (244)
T smart00220       81 RG-----RLSEDEARFYARQILSALEYLH---SNGIIHRDLKPENILLDEDGHVKLADFGLARQLDPGGL---LTTFVGT  149 (244)
T ss_pred             cc-----CCCHHHHHHHHHHHHHHHHHHH---HcCeecCCcCHHHeEECCCCcEEEccccceeeeccccc---cccccCC
Confidence            53     3889999999999999999999   88999999999999999999999999999987765421   1445678


Q ss_pred             CCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       241 ~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ..|++||......++.++|+||||+++++|++|..||..
T Consensus       150 ~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~  188 (244)
T smart00220      150 PEYMAPEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPG  188 (244)
T ss_pred             cCCCCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            899999999888899999999999999999999999975

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=5e-35  Score=241.60  Aligned_cols=202  Identities=18%  Similarity=0.261  Sum_probs=167.4

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcC-CCchHHHHHHHHHHHHhccCCcceeeeeeeeecC--------C
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNES-YSDSACKFSINNIVYAAQMDHKHILKLIGCCLET--------P  140 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~-~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--------~  140 (338)
                      .|....++|+|.||.||+|+.  +++.||+|+..-. ....--...++|+.+|..++|+|++.++..|...        .
T Consensus        18 ~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r~   97 (376)
T KOG0669|consen   18 KYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDRA   97 (376)
T ss_pred             HHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccccc
Confidence            355668899999999999998  6778888765422 1222235578999999999999999999988642        3


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                      .+|+||.+|+ .+|..++.+...    .++...+.+++.++..||.|+|   ...|+|||+||+|+|++.+|.+||+|||
T Consensus        98 t~ylVf~~ce-hDLaGlLsn~~v----r~sls~Ikk~Mk~Lm~GL~~iH---r~kilHRDmKaaNvLIt~dgilklADFG  169 (376)
T KOG0669|consen   98 TFYLVFDFCE-HDLAGLLSNRKV----RFSLSEIKKVMKGLMNGLYYIH---RNKILHRDMKAANVLITKDGILKLADFG  169 (376)
T ss_pred             eeeeeHHHhh-hhHHHHhcCccc----cccHHHHHHHHHHHHHHHHHHH---HhhHHhhcccHhhEEEcCCceEEeeccc
Confidence            4899999999 799999987654    6999999999999999999999   9999999999999999999999999999


Q ss_pred             CCcccCCCCce--eeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          221 ESISIPEGETH--IITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       221 ~a~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      +++........  ...++.+-|..|.+||.+.+. .++++.|||+.||++.||+||.+-+....
T Consensus       170 lar~fs~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgnt  233 (376)
T KOG0669|consen  170 LARAFSTSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNT  233 (376)
T ss_pred             cccceecccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCCh
Confidence            99766543221  122456679999999988764 59999999999999999999998876543

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-34  Score=241.84  Aligned_cols=206  Identities=16%  Similarity=0.219  Sum_probs=176.7

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCC-----cce
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETP-----IPI  143 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-----~~~  143 (338)
                      +.+..+.||.|+||+||..++  +|+.|++|++.... +-...+++.+|+.+|..++|.|++..++......     ++|
T Consensus        54 Di~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiY  133 (449)
T KOG0664|consen   54 DIQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELY  133 (449)
T ss_pred             cCCCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHH
Confidence            456678999999999999999  89999999997654 3455788999999999999999999988876543     578


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      .++|.|. .+|..+|-...     .++...+.-+..||++||.|||   +.+|.||||||.|+|+++|..+||+|||+++
T Consensus       134 V~TELmQ-SDLHKIIVSPQ-----~Ls~DHvKVFlYQILRGLKYLH---sA~ILHRDIKPGNLLVNSNCvLKICDFGLAR  204 (449)
T KOG0664|consen  134 VLTELMQ-SDLHKIIVSPQ-----ALTPDHVKVFVYQILRGLKYLH---TANILHRDIKPGNLLVNSNCILKICDFGLAR  204 (449)
T ss_pred             HHHHHHH-hhhhheeccCC-----CCCcchhhhhHHHHHhhhHHHh---hcchhhccCCCccEEeccCceEEeccccccc
Confidence            9999998 78988886554     6888999999999999999999   9999999999999999999999999999999


Q ss_pred             ccCCCCceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCccCCcccc
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVR  287 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~  287 (338)
                      ....++...+ +..+-|..|.|||.+++. .|+.+.||||.||++.||+..+..|...++.++.+
T Consensus       205 vee~d~~~hM-TqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQAq~PiqQL~  268 (449)
T KOG0664|consen  205 TWDQRDRLNM-THEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAAGPIEQLQ  268 (449)
T ss_pred             ccchhhhhhh-HHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhccChHHHHH
Confidence            8766554444 455678899999999875 49999999999999999999999988766644433

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-33  Score=244.67  Aligned_cols=252  Identities=15%  Similarity=0.231  Sum_probs=206.8

Q ss_pred             HHHHHHhhcCCCcCCccccCCCceEEEEEE-------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeee
Q 038823           63 AKELEIATNNYDERKFIKQDSTYKLYKGFW-------QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGC  135 (338)
Q Consensus        63 ~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~  135 (338)
                      .+++.....++....++-+|.||.||.|.|       +.+.|.+|..+...+.-....++.|.-++..+.|||+.++.+.
T Consensus       276 ~~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V  355 (563)
T KOG1024|consen  276 LQELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGV  355 (563)
T ss_pred             HHhhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEE
Confidence            356666777888889999999999999977       3345778888888788888899999999999999999999999


Q ss_pred             eec-CCcceEEEeecCCCCHHHhhhcCCC---CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC
Q 038823          136 CLE-TPIPILVFEYGEYTTLRDRIFGAPQ---PHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE  211 (338)
Q Consensus       136 ~~~-~~~~~lv~e~~~~gsL~~~l~~~~~---~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~  211 (338)
                      +.+ ...++.++.++.-|+|..++.....   .....++..+...++.|++.|++|||   +.++||.||..+|.++|+.
T Consensus       356 ~ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh---~~~ViHkDiAaRNCvIdd~  432 (563)
T KOG1024|consen  356 SIEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLH---NHGVIHKDIAARNCVIDDQ  432 (563)
T ss_pred             EeeccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHH---hcCcccchhhhhcceehhh
Confidence            875 5578999999999999999982211   11236788899999999999999999   9999999999999999999


Q ss_pred             CceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccCCcccccHH
Q 038823          212 NVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRTHGSVRHLI  290 (338)
Q Consensus       212 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~~~~~~~l~  290 (338)
                      .++||+|=.+++..-+.+.+....+......||+||.+.+..|+.++|||||||+||||+| |+.||....+        
T Consensus       433 LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~PyaeIDP--------  504 (563)
T KOG1024|consen  433 LQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEIDP--------  504 (563)
T ss_pred             eeEEeccchhccccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCccccCH--------
Confidence            9999999999998887777766566667889999999999999999999999999999999 9999976554        


Q ss_pred             HHHHHHHhcCccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          291 EYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       291 ~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                      .-+..+++++.             +-.....|+.++-.++.-||...|
T Consensus       505 fEm~~ylkdGy-------------RlaQP~NCPDeLf~vMacCWallp  539 (563)
T KOG1024|consen  505 FEMEHYLKDGY-------------RLAQPFNCPDELFTVMACCWALLP  539 (563)
T ss_pred             HHHHHHHhccc-------------eecCCCCCcHHHHHHHHHHHhcCc
Confidence            11222333332             111233467789999999998776

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=100.00  E-value=6.4e-32  Score=254.63  Aligned_cols=206  Identities=16%  Similarity=0.187  Sum_probs=154.7

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE------------------CCeEEEEEEeCcCCCchHHH--------------HHHH
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW------------------QERLISVMKYNESYSDSACK--------------FSIN  116 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~------------------~~~~vaik~~~~~~~~~~~~--------------~~~~  116 (338)
                      ..++|++.++||+|+||.||+|..                  .++.||||++..... ...+              ....
T Consensus       143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~-~~~~~fl~e~~~~~~~~e~~~v  221 (507)
T PLN03224        143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQ-GVRQDFLKTGTLAKGSAETGMV  221 (507)
T ss_pred             cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccch-hhHHHHHhhhhhhhcccchhHH
Confidence            467999999999999999999964                  345799999864321 1112              2345


Q ss_pred             HHHHHhccCCcce-----eeeeeeeec--------CCcceEEEeecCCCCHHHhhhcCCCC-------------------
Q 038823          117 NIVYAAQMDHKHI-----LKLIGCCLE--------TPIPILVFEYGEYTTLRDRIFGAPQP-------------------  164 (338)
Q Consensus       117 e~~~l~~l~h~ni-----v~l~~~~~~--------~~~~~lv~e~~~~gsL~~~l~~~~~~-------------------  164 (338)
                      |+..+.+++|.++     ++++++|..        .+..+|||||+++++|.+++......                   
T Consensus       222 E~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~  301 (507)
T PLN03224        222 EAYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNM  301 (507)
T ss_pred             HHHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhc
Confidence            6777777776654     677787753        35689999999999999998753210                   


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcc
Q 038823          165 HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYS  244 (338)
Q Consensus       165 ~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~  244 (338)
                      ....+++..+..++.|++.||.|||   ..+|+||||||+||+++.++.+||+|||++.......... .....+|+.|+
T Consensus       302 ~~~~~~~~~~~~i~~ql~~aL~~lH---~~~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~-~~~g~~tp~Y~  377 (507)
T PLN03224        302 PQDKRDINVIKGVMRQVLTGLRKLH---RIGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFN-PLYGMLDPRYS  377 (507)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCchHhEEECCCCcEEEEeCcCccccccCCccC-ccccCCCccee
Confidence            0113567889999999999999999   8999999999999999999999999999987654332211 12233578999


Q ss_pred             cccccccCCC----------------------CccchHHHHHHHHHHHHhCCC-CcCC
Q 038823          245 APEYKRGGVF----------------------NEKLDVYTFSTVLLELLTGQS-TRDL  279 (338)
Q Consensus       245 aPE~~~~~~~----------------------~~~~Dv~s~Gv~l~el~tG~~-p~~~  279 (338)
                      |||.+.....                      ..+.||||+||++|+|++|.. ||..
T Consensus       378 aPE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~  435 (507)
T PLN03224        378 PPEELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVAN  435 (507)
T ss_pred             ChhhhcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccc
Confidence            9998754321                      134799999999999999986 7653

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.98  E-value=7.8e-32  Score=259.70  Aligned_cols=201  Identities=18%  Similarity=0.156  Sum_probs=143.6

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--C----CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeee------e
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--Q----ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGC------C  136 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~----~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~------~  136 (338)
                      ..++|...+.||+|+||.||+|.+  +    +..||+|++......   +...++  .+....+.++..++..      +
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~~---e~~~~e--~l~~~~~~~~~~~~~~~~~~~~~  204 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGAV---EIWMNE--RVRRACPNSCADFVYGFLEPVSS  204 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccchh---HHHHHH--HHHhhchhhHHHHHHhhhccccc
Confidence            567899999999999999999999  4    689999998643211   111111  1122222233222221      2


Q ss_pred             ecCCcceEEEeecCCCCHHHhhhcCCCCC---------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCC
Q 038823          137 LETPIPILVFEYGEYTTLRDRIFGAPQPH---------------FEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNL  201 (338)
Q Consensus       137 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~---------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~di  201 (338)
                      ......++|+||+++++|.+++.......               ........+..++.|++.||.|||   +.+|+||||
T Consensus       205 ~~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH---~~gIiHRDL  281 (566)
T PLN03225        205 KKEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLH---STGIVHRDV  281 (566)
T ss_pred             ccCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHH---HCCEEeCcC
Confidence            45667899999999999999987543100               001123446689999999999999   899999999


Q ss_pred             CCCceeeCC-CCceEEecCCCCcccCCCCceeeeecccccCCcccccccccC----------------------CCCccc
Q 038823          202 ISLCILFNE-ENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGG----------------------VFNEKL  258 (338)
Q Consensus       202 k~~Nill~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~----------------------~~~~~~  258 (338)
                      ||+|||++. ++.+||+|||+|+.......... ....+++.|+|||.+...                      .++.++
T Consensus       282 KP~NILl~~~~~~~KL~DFGlA~~l~~~~~~~~-~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~  360 (566)
T PLN03225        282 KPQNIIFSEGSGSFKIIDLGAAADLRVGINYIP-KEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRF  360 (566)
T ss_pred             CHHHEEEeCCCCcEEEEeCCCccccccccccCC-cccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCc
Confidence            999999985 58999999999986544332221 455789999999965322                      134567


Q ss_pred             hHHHHHHHHHHHHhCCCCcC
Q 038823          259 DVYTFSTVLLELLTGQSTRD  278 (338)
Q Consensus       259 Dv~s~Gv~l~el~tG~~p~~  278 (338)
                      |||||||++|||+++..|++
T Consensus       361 DVwSlGviL~el~~~~~~~~  380 (566)
T PLN03225        361 DIYSAGLIFLQMAFPNLRSD  380 (566)
T ss_pred             ccHHHHHHHHHHHhCcCCCc
Confidence            99999999999999877654

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.98  E-value=4.6e-33  Score=252.93  Aligned_cols=196  Identities=18%  Similarity=0.203  Sum_probs=171.0

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchH-----HHHHHHHHHHHhccC---Ccceeeeeeeeec
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSA-----CKFSINNIVYAAQMD---HKHILKLIGCCLE  138 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~-----~~~~~~e~~~l~~l~---h~niv~l~~~~~~  138 (338)
                      .+|+..+.+|.|+||.|+.|.+  +...|++|.+.+..  -+.+     .-..-.|+++|..++   |+||++++++|.+
T Consensus       561 s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEd  640 (772)
T KOG1152|consen  561 SDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFED  640 (772)
T ss_pred             ccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeec
Confidence            4588899999999999999999  67789999887642  1111     122446999999997   9999999999999


Q ss_pred             CCcceEEEee-cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEe
Q 038823          139 TPIPILVFEY-GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLF  217 (338)
Q Consensus       139 ~~~~~lv~e~-~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~  217 (338)
                      ++.+||+||- -++.+|+++|..++     .+++..+.-|+.|++.|+++||   +.+|||||||-+|+.++.+|.+||+
T Consensus       641 dd~yyl~te~hg~gIDLFd~IE~kp-----~m~E~eAk~IFkQV~agi~hlh---~~~ivhrdikdenvivd~~g~~kli  712 (772)
T KOG1152|consen  641 DDYYYLETEVHGEGIDLFDFIEFKP-----RMDEPEAKLIFKQVVAGIKHLH---DQGIVHRDIKDENVIVDSNGFVKLI  712 (772)
T ss_pred             CCeeEEEecCCCCCcchhhhhhccC-----ccchHHHHHHHHHHHhcccccc---ccCceecccccccEEEecCCeEEEe
Confidence            9999999997 55789999998886     5999999999999999999999   9999999999999999999999999


Q ss_pred             cCCCCcccCCCCceeeeecccccCCcccccccccCCCC-ccchHHHHHHHHHHHHhCCCCcC
Q 038823          218 DFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFN-EKLDVYTFSTVLLELLTGQSTRD  278 (338)
Q Consensus       218 Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~s~Gv~l~el~tG~~p~~  278 (338)
                      |||.|.....+..    ...+||..|.|||++.+..|- ..-|||++|++||-++....||.
T Consensus       713 dfgsaa~~ksgpf----d~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpyy  770 (772)
T KOG1152|consen  713 DFGSAAYTKSGPF----DVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYY  770 (772)
T ss_pred             eccchhhhcCCCc----ceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCc
Confidence            9999887766543    456799999999999998864 56899999999999999999986

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.97  E-value=6.9e-31  Score=225.07  Aligned_cols=199  Identities=25%  Similarity=0.265  Sum_probs=172.4

Q ss_pred             CCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecC
Q 038823           73 YDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGE  150 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~  150 (338)
                      |+..+.||.|++|.||+|..  ++..+++|.+.........+.+.+|+..+.+++|+|++++++++...+..++++|+++
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYCE   80 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEeccC
Confidence            45678899999999999999  4789999999865333256788999999999999999999999999999999999999


Q ss_pred             CCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCc
Q 038823          151 YTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGET  230 (338)
Q Consensus       151 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~  230 (338)
                      +++|.+++.....    .+++.....++.+++.++.+||   ..+++|+||+|.||+++.++.++|+|||.+........
T Consensus        81 ~~~L~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~  153 (225)
T smart00221       81 GGDLFDYLRKKGG----KLSEEEARFYLRQILEALEYLH---SLGIVHRDLKPENILLGMDGLVKLADFGLARFIHRDLA  153 (225)
T ss_pred             CCCHHHHHHhccc----CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeeCceeeEecCccc
Confidence            9999999976542    2889999999999999999999   88999999999999999999999999999887765421


Q ss_pred             eeeeecccccCCccccccc-ccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          231 HIITRSRFGAWTYSAPEYK-RGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       231 ~~~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      . ......++..|++||.+ ....++.++|+||||+++++|++|+.||+.
T Consensus       154 ~-~~~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      154 A-LLKTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             c-cccceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence            1 11344577889999998 666688899999999999999999999975

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.97  E-value=2e-32  Score=238.20  Aligned_cols=198  Identities=18%  Similarity=0.217  Sum_probs=170.7

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-C-cc----eeeeeeeeecCCc
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMD-H-KH----ILKLIGCCLETPI  141 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h-~n----iv~l~~~~~~~~~  141 (338)
                      ++.|.+..++|+|.||.|-.+.+  .+..||+|+++..  ....+..+-|+++|.++. + |+    ++++.+||.-.++
T Consensus        88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V--~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrgh  165 (415)
T KOG0671|consen   88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNV--DKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGH  165 (415)
T ss_pred             ccceehhhhhcCCcccceEEEeecCCCceehHHHHHHH--HHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCc
Confidence            77899999999999999999998  6778999998764  233456778999999994 2 22    7889999999999


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC-----------
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE-----------  210 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~-----------  210 (338)
                      .++|+|.+. -|+.+++..++-   .+++..++..++.|++.+++|||   +..++|.||||+|||+.+           
T Consensus       166 iCivfellG-~S~~dFlk~N~y---~~fpi~~ir~m~~QL~~sv~fLh---~~kl~HTDLKPENILfvss~~~~~~~~k~  238 (415)
T KOG0671|consen  166 ICIVFELLG-LSTFDFLKENNY---IPFPIDHIRHMGYQLLESVAFLH---DLKLTHTDLKPENILFVSSEYFKTYNPKK  238 (415)
T ss_pred             eEEEEeccC-hhHHHHhccCCc---cccchHHHHHHHHHHHHHHHHHH---hcceeecCCChheEEEeccceEEEeccCC
Confidence            999999986 699999987653   57999999999999999999999   999999999999999942           


Q ss_pred             ---------CCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          211 ---------ENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       211 ---------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                               +..++|+|||.|+......     ...+.|..|.|||++.+-.++..+||||+||||+|+.||...|....
T Consensus       239 ~~~~~r~~ks~~I~vIDFGsAtf~~e~h-----s~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHe  313 (415)
T KOG0671|consen  239 KVCFIRPLKSTAIKVIDFGSATFDHEHH-----STIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHE  313 (415)
T ss_pred             ccceeccCCCcceEEEecCCcceeccCc-----ceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccCC
Confidence                     2358999999998765544     44567889999999999999999999999999999999999987544

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.97  E-value=6.6e-32  Score=254.74  Aligned_cols=200  Identities=21%  Similarity=0.269  Sum_probs=165.8

Q ss_pred             CCCcCCccccCCCc-eEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-CcceeeeeeeeecCCcceEEEeec
Q 038823           72 NYDERKFIKQDSTY-KLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCLETPIPILVFEYG  149 (338)
Q Consensus        72 ~~~~~~~lg~G~~g-~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~  149 (338)
                      -|...+.+|.|+.| .||+|.+.++.||||.+-..    ....+.+|+..|+.-+ |||||++|+.-.++...|++.|.|
T Consensus       510 ~~~~~eilG~Gs~Gt~Vf~G~ye~R~VAVKrll~e----~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalELC  585 (903)
T KOG1027|consen  510 FFSPKEILGYGSNGTVVFRGVYEGREVAVKRLLEE----FFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALELC  585 (903)
T ss_pred             eeccHHHcccCCCCcEEEEEeeCCceehHHHHhhH----hHHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehHh
Confidence            45556778999987 58999999999999998543    3356789999998885 999999999999999999999999


Q ss_pred             CCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC---C--CceEEecCCCCcc
Q 038823          150 EYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE---E--NVAKLFDFSESIS  224 (338)
Q Consensus       150 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~---~--~~~kl~Dfg~a~~  224 (338)
                      . .+|.+++..... ............+..|+++||++||   +.+||||||||.||||+.   +  ..++|+|||+++.
T Consensus       586 ~-~sL~dlie~~~~-d~~~~~~i~~~~~l~q~~~GlaHLH---sl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKk  660 (903)
T KOG1027|consen  586 A-CSLQDLIESSGL-DVEMQSDIDPISVLSQIASGLAHLH---SLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKK  660 (903)
T ss_pred             h-hhHHHHHhcccc-chhhcccccHHHHHHHHHHHHHHHH---hcccccccCCCceEEEEccCCCcceeEEecccccccc
Confidence            9 799999987411 1111222445778999999999999   999999999999999976   3  4699999999998


Q ss_pred             cCCCCceee-eecccccCCcccccccccCCCCccchHHHHHHHHHHHHhC-CCCcCCc
Q 038823          225 IPEGETHII-TRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTG-QSTRDLL  280 (338)
Q Consensus       225 ~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG-~~p~~~~  280 (338)
                      ...+..... .....||.+|+|||.+....-+.++||||+||++|+.++| ..||...
T Consensus       661 l~~~~sS~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~  718 (903)
T KOG1027|consen  661 LAGGKSSFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDS  718 (903)
T ss_pred             cCCCcchhhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCch
Confidence            876654322 3566799999999999988888899999999999999995 8899743

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=1.3e-30  Score=212.71  Aligned_cols=206  Identities=15%  Similarity=0.221  Sum_probs=173.2

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-CcceeeeeeeeecC--Ccce
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCLET--PIPI  143 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~--~~~~  143 (338)
                      ..++|++.+++|+|.++.||.|..  ++..++||+++..    ..+.+.+|+.+|..|. ||||+++++...+.  ..+.
T Consensus        36 ~~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPV----kkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~Sktpa  111 (338)
T KOG0668|consen   36 NQDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPV----KKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPS  111 (338)
T ss_pred             ccchHHHHHHHcCccHhhHhcccccCCCceEEEeeechH----HHHHHHHHHHHHHhccCCCCeeehhhhhcCccccCch
Confidence            456788899999999999999997  8889999998754    2256889999999998 99999999998764  4678


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC-CceEEecCCCC
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE-NVAKLFDFSES  222 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~-~~~kl~Dfg~a  222 (338)
                      ||+||+.+.+...+.        ..++...+..++.+++.||.|+|   +.||.|||+||.|+++|.. -.++|+|+|+|
T Consensus       112 LiFE~v~n~Dfk~ly--------~tl~d~dIryY~~elLkALdyCH---S~GImHRDVKPhNvmIdh~~rkLrlIDWGLA  180 (338)
T KOG0668|consen  112 LIFEYVNNTDFKQLY--------PTLTDYDIRYYIYELLKALDYCH---SMGIMHRDVKPHNVMIDHELRKLRLIDWGLA  180 (338)
T ss_pred             hHhhhhccccHHHHh--------hhhchhhHHHHHHHHHHHHhHHH---hcCcccccCCcceeeechhhceeeeeecchH
Confidence            999999998887765        25888889999999999999999   9999999999999999965 46999999999


Q ss_pred             cccCCCCceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHHHH
Q 038823          223 ISIPEGETHIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLK  294 (338)
Q Consensus       223 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~~~  294 (338)
                      ....++...   +..+.+..|-.||.+.+- .|+.+-|+|||||++..|+..+.||....+  ..+.++..++
T Consensus       181 EFYHp~~eY---nVRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~d--N~DQLVkIak  248 (338)
T KOG0668|consen  181 EFYHPGKEY---NVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHD--NYDQLVKIAK  248 (338)
T ss_pred             hhcCCCcee---eeeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCC--CHHHHHHHHH
Confidence            988776655   455667778899998764 489999999999999999999999975443  3444555444

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.96  E-value=1.4e-28  Score=207.74  Aligned_cols=183  Identities=24%  Similarity=0.341  Sum_probs=160.5

Q ss_pred             cccCCCceEEEEEEC--CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCCCHHH
Q 038823           79 IKQDSTYKLYKGFWQ--ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRD  156 (338)
Q Consensus        79 lg~G~~g~Vy~~~~~--~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~  156 (338)
                      ||+|++|.||++...  +..+++|.+.........+.+.+|+..++.++|++|+++++++......++++|++++++|.+
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~   80 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKD   80 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHHH
Confidence            689999999999994  899999999866433245778999999999999999999999999899999999999999999


Q ss_pred             hhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC-CCceEEecCCCCcccCCCCceeeee
Q 038823          157 RIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE-ENVAKLFDFSESISIPEGETHIITR  235 (338)
Q Consensus       157 ~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~-~~~~kl~Dfg~a~~~~~~~~~~~~~  235 (338)
                      ++.....    .+++..+..++.+++.++.+||   ..+++|+||+|.||+++. ++.++|+|||.+........  ...
T Consensus        81 ~~~~~~~----~~~~~~~~~~~~~l~~~l~~lh---~~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~--~~~  151 (215)
T cd00180          81 LLKENEG----KLSEDEILRILLQILEGLEYLH---SNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKS--LLK  151 (215)
T ss_pred             HHHhccC----CCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcc--hhh
Confidence            9976532    5899999999999999999999   889999999999999999 89999999999887655431  113


Q ss_pred             cccccCCcccccccccC-CCCccchHHHHHHHHHHH
Q 038823          236 SRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLEL  270 (338)
Q Consensus       236 ~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el  270 (338)
                      ...+...|++||..... ..+.++|+|++|+++++|
T Consensus       152 ~~~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l  187 (215)
T cd00180         152 TIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL  187 (215)
T ss_pred             cccCCCCccChhHhcccCCCCchhhhHHHHHHHHHH
Confidence            44578899999998877 788999999999999999

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.96  E-value=1e-30  Score=218.21  Aligned_cols=194  Identities=19%  Similarity=0.211  Sum_probs=161.8

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-Ccceeeeeee-eecCCcceEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGC-CLETPIPILV  145 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~-~~~~~~~~lv  145 (338)
                      .+.|.+.+.||+|.||.+-++..  +++.+++|-+......  .++|.+|...--.|. |.||+.-|+. |++.+.++++
T Consensus        23 ~d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~tt--~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~  100 (378)
T KOG1345|consen   23 EDVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQTT--QADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFV  100 (378)
T ss_pred             hhhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcchhh--HHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEe
Confidence            35689999999999999999999  7788999998876433  478999988766664 9999998875 5667788999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeC-CC-CceEEecCCCCc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFN-EE-NVAKLFDFSESI  223 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~-~~-~~~kl~Dfg~a~  223 (338)
                      +||++.|+|.+-+...      .+.+....+++.|+++||.|+|   ++++||||||.+|||+- .| ..+||+|||.++
T Consensus       101 qE~aP~gdL~snv~~~------GigE~~~K~v~~ql~SAi~fMH---sknlVHRdlK~eNiLif~~df~rvKlcDFG~t~  171 (378)
T KOG1345|consen  101 QEFAPRGDLRSNVEAA------GIGEANTKKVFAQLLSAIEFMH---SKNLVHRDLKAENILIFDADFYRVKLCDFGLTR  171 (378)
T ss_pred             eccCccchhhhhcCcc------cccHHHHHHHHHHHHHHHHHhh---ccchhhcccccceEEEecCCccEEEeeeccccc
Confidence            9999999999888664      5888999999999999999999   99999999999999993 33 469999999987


Q ss_pred             ccCCCCceeeeecccccCCccccccccc---C--CCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYKRG---G--VFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~--~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ..+...     .....+..|.+||....   +  ...+.+|+|.||+++|.++||.+||..
T Consensus       172 k~g~tV-----~~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQk  227 (378)
T KOG1345|consen  172 KVGTTV-----KYLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQK  227 (378)
T ss_pred             ccCcee-----hhhhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchh
Confidence            654422     33345678999997643   2  257889999999999999999999974

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.96  E-value=1.4e-29  Score=215.81  Aligned_cols=195  Identities=18%  Similarity=0.234  Sum_probs=168.1

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCC------c
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETP------I  141 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~------~  141 (338)
                      .+|...+.+|.|.- .|-.+.+  .++.|++|+..... .....++..+|..++..+.|+||++++.++....      .
T Consensus        17 ~Ry~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e   95 (369)
T KOG0665|consen   17 KRYVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQE   95 (369)
T ss_pred             eeeeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHh
Confidence            45767788899988 6767766  89999999987653 3344577899999999999999999999997543      5


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCC
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSE  221 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~  221 (338)
                      .|+|||+|. .+|...+.-       .++-.++..+..|++.|+.|||   +.+|+||||||+||++..+..+||.|||+
T Consensus        96 ~y~v~e~m~-~nl~~vi~~-------elDH~tis~i~yq~~~~ik~lh---s~~IihRdLkPsnivv~~~~~lKi~dfg~  164 (369)
T KOG0665|consen   96 VYLVMELMD-ANLCQVILM-------ELDHETISYILYQMLCGIKHLH---SAGIIHRDLKPSNIVVNSDCTLKILDFGL  164 (369)
T ss_pred             HHHHHHhhh-hHHHHHHHH-------hcchHHHHHHHHHHHHHHHHHH---hcceeecccCcccceecchhheeeccchh
Confidence            799999999 899998862       4778899999999999999999   99999999999999999999999999999


Q ss_pred             CcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          222 SISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       222 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      |+.....   ...+..+.|..|.|||++.+..+.+.+||||.||++.||++|+.-|...
T Consensus       165 ar~e~~~---~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~g~  220 (369)
T KOG0665|consen  165 ARTEDTD---FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFPGK  220 (369)
T ss_pred             hcccCcc---cccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEecCc
Confidence            9876544   1226677899999999998888999999999999999999999998743

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.96  E-value=3.8e-30  Score=231.45  Aligned_cols=202  Identities=19%  Similarity=0.197  Sum_probs=174.8

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC------CcceeeeeeeeecCC
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMD------HKHILKLIGCCLETP  140 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~------h~niv~l~~~~~~~~  140 (338)
                      ..+.|.+....|+|-|++|.+|.+  .|..||||++.....  ..+.=+.|+++|++|+      --|+++|+..|...+
T Consensus       430 LD~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~--M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hkn  507 (752)
T KOG0670|consen  430 LDSRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEV--MHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKN  507 (752)
T ss_pred             hcceeEEEeccccceeeeeeeccccCCCCeeEEEEeecchH--HhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhcc
Confidence            345677777889999999999999  778999999987532  2244578999999996      348999999999999


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC-CceEEecC
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE-NVAKLFDF  219 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~-~~~kl~Df  219 (338)
                      +++||||.+. .+|.++|.+.+.+-  .|....+..++.|+.-||..|-   ..+|+|.||||.|||+++. ..+|||||
T Consensus       508 HLClVFE~Ls-lNLRevLKKyG~nv--GL~ikaVRsYaqQLflALklLK---~c~vlHaDIKPDNiLVNE~k~iLKLCDf  581 (752)
T KOG0670|consen  508 HLCLVFEPLS-LNLREVLKKYGRNV--GLHIKAVRSYAQQLFLALKLLK---KCGVLHADIKPDNILVNESKNILKLCDF  581 (752)
T ss_pred             eeEEEehhhh-chHHHHHHHhCccc--ceeehHHHHHHHHHHHHHHHHH---hcCeeecccCccceEeccCcceeeeccC
Confidence            9999999988 89999999877543  6888899999999999999999   9999999999999999865 56899999


Q ss_pred             CCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          220 SESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       220 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      |.|.....++.    +.+.-+..|.|||++.+-.|+...|+||.||+||||.||+..|+....
T Consensus       582 GSA~~~~enei----tPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~TN  640 (752)
T KOG0670|consen  582 GSASFASENEI----TPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGRTN  640 (752)
T ss_pred             ccccccccccc----cHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecCCCCc
Confidence            99988776654    444566789999999999999999999999999999999999987554

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.96  E-value=5.5e-30  Score=236.41  Aligned_cols=200  Identities=21%  Similarity=0.197  Sum_probs=175.0

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      ...++|.....+|.|.||.|||+++  ++...|+|.++... .....-...|+-+++..+|+||+.++|.+...+..|++
T Consensus        12 nP~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep-~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwic   90 (829)
T KOG0576|consen   12 NPQDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEP-GDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWIC   90 (829)
T ss_pred             CCccchhheeeecCCcccchhhhcccccCchhhheeeeccC-CccccccccceeeeecCCCcChHHHHhhhhhhcCcEEE
Confidence            4567899999999999999999999  88899999988663 33345667899999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      ||||.+|+|.+.-...+     ++++.++...+++.+.||.|||   +.+-+|||||-.||++++.|.+|++|||.+..+
T Consensus        91 MEycgggslQdiy~~Tg-----plselqiayvcRetl~gl~ylh---s~gk~hRdiKGanilltd~gDvklaDfgvsaqi  162 (829)
T KOG0576|consen   91 MEYCGGGSLQDIYHVTG-----PLSELQIAYVCRETLQGLKYLH---SQGKIHRDIKGANILLTDEGDVKLADFGVSAQI  162 (829)
T ss_pred             EEecCCCcccceeeecc-----cchhHHHHHHHhhhhccchhhh---cCCcccccccccceeecccCceeecccCchhhh
Confidence            99999999999887765     7999999999999999999999   999999999999999999999999999998766


Q ss_pred             CCCCceeeeecccccCCcccccccc---cCCCCccchHHHHHHHHHHHHhCCCCcC
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKR---GGVFNEKLDVYTFSTVLLELLTGQSTRD  278 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~Gv~l~el~tG~~p~~  278 (338)
                      ...-.  ......||+.|||||+..   .+.|..++|||+.|+...|+---++|..
T Consensus       163 tati~--KrksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplf  216 (829)
T KOG0576|consen  163 TATIA--KRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLF  216 (829)
T ss_pred             hhhhh--hhhcccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCccc
Confidence            54322  225677999999999863   4569999999999999999988777754

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=4.4e-27  Score=210.48  Aligned_cols=131  Identities=15%  Similarity=0.175  Sum_probs=113.5

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-----C---cceeeeeeeeec--
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMD-----H---KHILKLIGCCLE--  138 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-----h---~niv~l~~~~~~--  138 (338)
                      .+|.+.++||-|.|++||++.+  +.+-||+|+.+..  ....+..+.|+.+|++++     |   .+||+|++.|..  
T Consensus        78 gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSA--qhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsG  155 (590)
T KOG1290|consen   78 GRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSA--QHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSG  155 (590)
T ss_pred             ceEEEEEeccccccceeEEEeeccCCeEEEEEEEehh--hHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecC
Confidence            6788999999999999999999  7788999998764  334467889999999984     2   369999999964  


Q ss_pred             --CCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeC
Q 038823          139 --TPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFN  209 (338)
Q Consensus       139 --~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~  209 (338)
                        +.+.++|+|++. -+|..+|....-   ..++...+.+|+.||+.||.|||.  ..+|||.||||+|||+.
T Consensus       156 pNG~HVCMVfEvLG-dnLLklI~~s~Y---rGlpl~~VK~I~~qvL~GLdYLH~--ecgIIHTDlKPENvLl~  222 (590)
T KOG1290|consen  156 PNGQHVCMVFEVLG-DNLLKLIKYSNY---RGLPLSCVKEICRQVLTGLDYLHR--ECGIIHTDLKPENVLLC  222 (590)
T ss_pred             CCCcEEEEEehhhh-hHHHHHHHHhCC---CCCcHHHHHHHHHHHHHHHHHHHH--hcCccccCCCcceeeee
Confidence              457899999987 799999987654   469999999999999999999997  67999999999999994

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.94  E-value=2.5e-27  Score=208.98  Aligned_cols=201  Identities=21%  Similarity=0.229  Sum_probs=167.5

Q ss_pred             HHhhcCCCcCCccccCCCceEEEEEE-----CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-CcceeeeeeeeecCC
Q 038823           67 EIATNNYDERKFIKQDSTYKLYKGFW-----QERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCLETP  140 (338)
Q Consensus        67 ~~~~~~~~~~~~lg~G~~g~Vy~~~~-----~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~  140 (338)
                      ....+.|...++||+|.|++||++++     .+..||+|.+......   .+..+|++.|..+. +.||+++.+++...+
T Consensus        32 p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~p---~ri~~El~~L~~~gG~~ni~~~~~~~rnnd  108 (418)
T KOG1167|consen   32 PFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSSP---SRILNELEMLYRLGGSDNIIKLNGCFRNND  108 (418)
T ss_pred             hhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccccCc---hHHHHHHHHHHHhccchhhhcchhhhccCC
Confidence            34456688999999999999999998     3568999999866444   56889999999996 999999999999999


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC-CceEEecC
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE-NVAKLFDF  219 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~-~~~kl~Df  219 (338)
                      ...+|+||++.....++..        .++...+..++..++.||.++|   ..|||||||||+|+|.+.. +.-.|.||
T Consensus       109 ~v~ivlp~~~H~~f~~l~~--------~l~~~~i~~Yl~~ll~Al~~~h---~~GIvHRDiKpsNFL~n~~t~rg~LvDF  177 (418)
T KOG1167|consen  109 QVAIVLPYFEHDRFRDLYR--------SLSLAEIRWYLRNLLKALAHLH---KNGIVHRDIKPSNFLYNRRTQRGVLVDF  177 (418)
T ss_pred             eeEEEecccCccCHHHHHh--------cCCHHHHHHHHHHHHHHhhhhh---ccCccccCCCccccccccccCCceEEec
Confidence            9999999999999988884        4778899999999999999999   9999999999999999854 67899999


Q ss_pred             CCCccc-----------------CC----------------C---------CceeeeecccccCCccccccccc-CCCCc
Q 038823          220 SESISI-----------------PE----------------G---------ETHIITRSRFGAWTYSAPEYKRG-GVFNE  256 (338)
Q Consensus       220 g~a~~~-----------------~~----------------~---------~~~~~~~~~~gt~~y~aPE~~~~-~~~~~  256 (338)
                      |+|...                 ..                .         ..........||++|.|||++.. ..-++
T Consensus       178 gLA~~~d~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~Qtt  257 (418)
T KOG1167|consen  178 GLAQRYDGYQQTEHSRSYSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPRQTT  257 (418)
T ss_pred             hhHHHHHhhhhhhhhhhhhcccCCccccCcccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHhhccCcCC
Confidence            998611                 00                0         00011134579999999998765 45789


Q ss_pred             cchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          257 KLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       257 ~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ++||||.||+++-+++++.||....
T Consensus       258 aiDiws~GVI~Lslls~~~PFf~a~  282 (418)
T KOG1167|consen  258 AIDIWSAGVILLSLLSRRYPFFKAK  282 (418)
T ss_pred             ccceeeccceeehhhccccccccCc
Confidence            9999999999999999999997543

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.94  E-value=1.7e-26  Score=209.30  Aligned_cols=169  Identities=15%  Similarity=0.093  Sum_probs=131.7

Q ss_pred             HHHHhhcCCCcCCccccCCCceEEEEEE---CCeEEEEEEeCcCC----CchHHHHHHHHHHHHhccCCcceee-eeeee
Q 038823           65 ELEIATNNYDERKFIKQDSTYKLYKGFW---QERLISVMKYNESY----SDSACKFSINNIVYAAQMDHKHILK-LIGCC  136 (338)
Q Consensus        65 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~---~~~~vaik~~~~~~----~~~~~~~~~~e~~~l~~l~h~niv~-l~~~~  136 (338)
                      ......++|...+.||+|+||+||+|.+   +++.+|+|+.....    .......+.+|+.+|++++|+|+++ ++++ 
T Consensus        12 ~~~~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~-   90 (365)
T PRK09188         12 QIPALSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLAT-   90 (365)
T ss_pred             ccccccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEc-
Confidence            3445667899999999999999999987   46778999875331    2234567899999999999999985 4432 


Q ss_pred             ecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCC-CCCceeeCCCCceE
Q 038823          137 LETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNL-ISLCILFNEENVAK  215 (338)
Q Consensus       137 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~di-k~~Nill~~~~~~k  215 (338)
                         +..++||||++|++|... .  .      ..   ...++.+++.||.|||   ..+|+|||| ||+|||++.++.+|
T Consensus        91 ---~~~~LVmE~~~G~~L~~~-~--~------~~---~~~~~~~i~~aL~~lH---~~gIiHrDL~KP~NILv~~~~~ik  152 (365)
T PRK09188         91 ---GKDGLVRGWTEGVPLHLA-R--P------HG---DPAWFRSAHRALRDLH---RAGITHNDLAKPQNWLMGPDGEAA  152 (365)
T ss_pred             ---CCcEEEEEccCCCCHHHh-C--c------cc---hHHHHHHHHHHHHHHH---HCCCeeCCCCCcceEEEcCCCCEE
Confidence               457999999999999632 1  1      11   1457889999999999   899999999 99999999999999


Q ss_pred             EecCCCCcccCCCCcee------eeecccccCCcccccccccC
Q 038823          216 LFDFSESISIPEGETHI------ITRSRFGAWTYSAPEYKRGG  252 (338)
Q Consensus       216 l~Dfg~a~~~~~~~~~~------~~~~~~gt~~y~aPE~~~~~  252 (338)
                      |+|||+|+.........      ......+++.|+|||++...
T Consensus       153 LiDFGlA~~~~~~~~~~~~~~~~d~~~~~~~~~~~~pe~~~~~  195 (365)
T PRK09188        153 VIDFQLASVFRRRGALYRIAAYEDLRHLLKHKRTYAPDALTPR  195 (365)
T ss_pred             EEECccceecccCcchhhhhhhhhhhhhhccCccCCcccCChh
Confidence            99999998765443211      11345688899999998643

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.94  E-value=3.2e-27  Score=237.98  Aligned_cols=148  Identities=19%  Similarity=0.225  Sum_probs=115.0

Q ss_pred             ccCC-cceeeeeeeee-------cCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC
Q 038823          123 QMDH-KHILKLIGCCL-------ETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPR  194 (338)
Q Consensus       123 ~l~h-~niv~l~~~~~-------~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~  194 (338)
                      .++| .||.+++++|.       +...++.++|++. ++|.+++.....    .+++..++.++.||+.||.|||   +.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~L~~~l~~~~~----~~~~~~~~~i~~qi~~al~~lH---~~   99 (793)
T PLN00181         28 SLSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECED-VSLRQWLDNPDR----SVDAFECFHVFRQIVEIVNAAH---SQ   99 (793)
T ss_pred             hhhHHHHHHHhhcccCCccccccccchhhhhhccCC-ccHHHHHhcccc----cccHHHHHHHHHHHHHHHHHHH---hC
Confidence            4456 68888888872       3345788899886 799999975432    6999999999999999999999   99


Q ss_pred             CeeecCCCCCceeeCCC-------------------CceEEecCCCCcccCCCCc--------------eeeeecccccC
Q 038823          195 PIVFGNLISLCILFNEE-------------------NVAKLFDFSESISIPEGET--------------HIITRSRFGAW  241 (338)
Q Consensus       195 ~iiH~dik~~Nill~~~-------------------~~~kl~Dfg~a~~~~~~~~--------------~~~~~~~~gt~  241 (338)
                      +|+||||||+|||++..                   +.+|++|||+++.......              ........||+
T Consensus       100 gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  179 (793)
T PLN00181        100 GIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMS  179 (793)
T ss_pred             CeeeccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCc
Confidence            99999999999999654                   4456666666653211000              00001235788


Q ss_pred             CcccccccccCCCCccchHHHHHHHHHHHHhCCCCcC
Q 038823          242 TYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRD  278 (338)
Q Consensus       242 ~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~  278 (338)
                      .|+|||++.+..++.++|||||||+||||++|.+|+.
T Consensus       180 ~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~  216 (793)
T PLN00181        180 WYTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSRE  216 (793)
T ss_pred             ceEChhhhccCCCCchhhhhhHHHHHHHHhhCCCchh
Confidence            9999999999999999999999999999999998875

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.93  E-value=6e-26  Score=187.72  Aligned_cols=107  Identities=23%  Similarity=0.191  Sum_probs=94.5

Q ss_pred             CCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCce
Q 038823          152 TTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH  231 (338)
Q Consensus       152 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~  231 (338)
                      |+|.+++...+.    .+++..++.++.|++.||.|||   +.+      ||+|||++.++.+|+  ||.+......   
T Consensus         1 GsL~~~l~~~~~----~l~~~~~~~i~~qi~~~L~~lH---~~~------kp~Nil~~~~~~~~~--fG~~~~~~~~---   62 (176)
T smart00750        1 VSLADILEVRGR----PLNEEEIWAVCLQCLRALRELH---RQA------KSGNILLTWDGLLKL--DGSVAFKTPE---   62 (176)
T ss_pred             CcHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHH---hcC------CcccEeEcCccceee--ccceEeeccc---
Confidence            689999976543    6999999999999999999999   655      999999999999999  9998766442   


Q ss_pred             eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          232 IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       232 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                          ...||+.|+|||++.+..++.++|||||||++|||+||+.||...
T Consensus        63 ----~~~g~~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~  107 (176)
T smart00750       63 ----QSRVDPYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEE  107 (176)
T ss_pred             ----cCCCcccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCcccc
Confidence                225889999999999999999999999999999999999999643

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.93  E-value=4.6e-25  Score=189.29  Aligned_cols=202  Identities=16%  Similarity=0.150  Sum_probs=174.4

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-CcceeeeeeeeecCCcceEEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~  146 (338)
                      .-+|.+.++||+|+||+++.|++  +++.||||.-......   ..+..|....+.|. .++|...|.+..++-.-.||+
T Consensus        27 G~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS~A---PQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVi  103 (449)
T KOG1165|consen   27 GPHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKSEA---PQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVI  103 (449)
T ss_pred             cccceeccccccCcceeeecccccccCceEEEEeccccCCc---chHHHHHHHHHHHcCCCCCCceeeeccccchhhhhh
Confidence            34699999999999999999999  9999999987644222   45667788887775 799999999988888889999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC-----CceEEecCCC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE-----NVAKLFDFSE  221 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~-----~~~kl~Dfg~  221 (338)
                      |++. .||.|++.=.++    .|+..++..+|.|++.-++|+|   .+.+|.|||||+|+||..-     ..+.|+|||+
T Consensus       104 dLLG-PSLEDLFD~CgR----~FSvKTV~miA~Qmi~rie~vH---~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGm  175 (449)
T KOG1165|consen  104 DLLG-PSLEDLFDLCGR----RFSVKTVAMIAKQMITRIEYVH---EKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGM  175 (449)
T ss_pred             hhhC-cCHHHHHHHhcC----cccHHhHHHHHHHHHHHHHHHH---hcceeecccCccceeecCCCCCCCceEEEEeccc
Confidence            9986 899999987776    7999999999999999999999   9999999999999999643     4589999999


Q ss_pred             CcccCCCCce-----eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          222 SISIPEGETH-----IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       222 a~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      |+...+..+.     .......||.+||+-....+..-+...|+-|||-++++.+.|..||.....
T Consensus       176 AK~YrDp~TkqHIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGLKA  241 (449)
T KOG1165|consen  176 AKEYRDPKTKQHIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKA  241 (449)
T ss_pred             hhhhcCccccccCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCccccccC
Confidence            9988665442     122455699999999999999999999999999999999999999987665

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.93  E-value=9.1e-25  Score=197.85  Aligned_cols=203  Identities=16%  Similarity=0.137  Sum_probs=165.8

Q ss_pred             CCCcCCccccCCCceEEEEEE-C--CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCC----cceeeeeeee-ecCCcce
Q 038823           72 NYDERKFIKQDSTYKLYKGFW-Q--ERLISVMKYNESYSDSACKFSINNIVYAAQMDH----KHILKLIGCC-LETPIPI  143 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~-~--~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h----~niv~l~~~~-~~~~~~~  143 (338)
                      +|.+.+.||+|+||.||.+.. .  ...+|+|.......... ..+..|..++..+..    +++..+++.. ......+
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~-~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~   97 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKP-SVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNF   97 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCC-ccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeE
Confidence            799999999999999999998 2  24688888765432222 257788888888863    6899999998 4777889


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC-----CceEEec
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE-----NVAKLFD  218 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~-----~~~kl~D  218 (338)
                      +||+.+. .||.++......   ..++..+.++++.|++.+|.+||   +.|++||||||+|+++...     ..+.|.|
T Consensus        98 iVM~l~G-~sL~dl~~~~~~---~~fs~~T~l~ia~q~l~~l~~lH---~~G~iHRDiKp~N~~~g~~~~~~~~~~~llD  170 (322)
T KOG1164|consen   98 IVMSLLG-PSLEDLRKRNPP---GRFSRKTVLRIAIQNLNALEDLH---SKGFIHRDIKPENFVVGQSSRSEVRTLYLLD  170 (322)
T ss_pred             EEEeccC-ccHHHHHHhCCC---CCcCHhHHHHHHHHHHHHHHHHH---hcCcccCCcCHHHeeecCCCCcccceEEEEe
Confidence            9999876 899998866652   27999999999999999999999   9999999999999999855     4699999


Q ss_pred             CCCCc--ccCCCCc----eee--eecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          219 FSESI--SIPEGET----HII--TRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       219 fg~a~--~~~~~~~----~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ||+++  .......    ...  .....||.+|+++....+...+.+.|+||++.++.|++.|..||.....
T Consensus       171 fGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~  242 (322)
T KOG1164|consen  171 FGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALEM  242 (322)
T ss_pred             cCCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccccc
Confidence            99998  3222111    111  1234599999999999999999999999999999999999999976554

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.92  E-value=1.9e-25  Score=183.81  Aligned_cols=203  Identities=16%  Similarity=0.123  Sum_probs=172.8

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-CcceeeeeeeeecCCcceEE
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv  145 (338)
                      ..++|.+.+.||+|+||.+|.|..  +|..||||.-++....   ..+..|..+...|+ ...|+.+..+..+...-.+|
T Consensus        13 v~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~h---pqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlV   89 (341)
T KOG1163|consen   13 VGGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAKH---PQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLV   89 (341)
T ss_pred             eccceEEEEeecCCchhheeeeeeccCCceEEEEeecccCCC---cchhHHHHHHHHhccCCCCchhhhhccccccceee
Confidence            346799999999999999999999  8999999998766433   34677888888887 57888899999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC---CceEEecCCCC
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE---NVAKLFDFSES  222 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~---~~~kl~Dfg~a  222 (338)
                      |+.+. .||.+++.-..+    .++..+++.++-|++.-++|+|   .++.|||||||+|+|+.-+   ..+.++|||+|
T Consensus        90 MdLLG-PsLEdLfnfC~R----~ftmkTvLMLaDQml~RiEyvH---~r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLa  161 (341)
T KOG1163|consen   90 MDLLG-PSLEDLFNFCSR----RFTMKTVLMLADQMLSRIEYVH---LRNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLA  161 (341)
T ss_pred             eeccC-ccHHHHHHHHhh----hhhHHhHHHHHHHHHHHHHHHH---hhccccccCCccceeeccccccceEEEEeccch
Confidence            99986 899999987765    7999999999999999999999   9999999999999999643   56899999999


Q ss_pred             cccCCCCce-----eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          223 ISIPEGETH-----IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       223 ~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      +...+..+.     .......||.+|.+-....+..-+...|+-|+|.+|.+.-.|..||.....
T Consensus       162 Kky~d~~t~~HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglka  226 (341)
T KOG1163|consen  162 KKYRDIRTRQHIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGLKA  226 (341)
T ss_pred             hhhccccccccCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcccccch
Confidence            877543321     122456799999998877777778899999999999999999999997765

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.91  E-value=2.9e-23  Score=186.75  Aligned_cols=203  Identities=23%  Similarity=0.321  Sum_probs=171.9

Q ss_pred             CCcCCccccCCCceEEEEEECCeEEEEEEeCcCCCch--HHHHHHHHHHHHhccCCc-ceeeeeeeeecCCcceEEEeec
Q 038823           73 YDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDS--ACKFSINNIVYAAQMDHK-HILKLIGCCLETPIPILVFEYG  149 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~--~~~~~~~e~~~l~~l~h~-niv~l~~~~~~~~~~~lv~e~~  149 (338)
                      |.....||.|+||.||++... ..+++|.+.......  ....+.+|+.++..+.|+ +|+++++++......+++++++
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~-~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   80 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR-KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEYV   80 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec-cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEecC
Confidence            566788999999999999987 778899988665443  467899999999999988 7999999997777789999999


Q ss_pred             CCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC-ceEEecCCCCcccCCC
Q 038823          150 EYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN-VAKLFDFSESISIPEG  228 (338)
Q Consensus       150 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~-~~kl~Dfg~a~~~~~~  228 (338)
                      .++++.+++......  ..++......+..|++.++.|+|   ..+++|||+||+||+++..+ .++++|||.+......
T Consensus        81 ~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~H---~~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~  155 (384)
T COG0515          81 DGGSLEDLLKKIGRK--GPLSESEALFILAQILSALEYLH---SKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDP  155 (384)
T ss_pred             CCCcHHHHHHhcccc--cCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeeecCCCCeEEEeccCcceecCCC
Confidence            999999777655321  15889999999999999999999   89999999999999999988 7999999999865544


Q ss_pred             Ccee----eeecccccCCccccccccc---CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          229 ETHI----ITRSRFGAWTYSAPEYKRG---GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       229 ~~~~----~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ....    ......|+..|+|||....   ..++...|+||+|++++++++|..||....
T Consensus       156 ~~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~  215 (384)
T COG0515         156 GSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEK  215 (384)
T ss_pred             CccccccccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC
Confidence            3221    2256679999999999987   578899999999999999999999976543

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.91  E-value=2.7e-24  Score=181.89  Aligned_cols=172  Identities=15%  Similarity=0.095  Sum_probs=135.5

Q ss_pred             hhcCCCcCCccccCCCceEEEEEECCeEEEEEEeCcCCCchH--HHH------HHHHHHHHhccCCcceeeeeeeeecC-
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSA--CKF------SINNIVYAAQMDHKHILKLIGCCLET-  139 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~--~~~------~~~e~~~l~~l~h~niv~l~~~~~~~-  139 (338)
                      ..++|...+++|.|+||.||....++..+++|.+........  ...      +.+|+..+.++.|++|..+.+++... 
T Consensus        29 l~~~y~~~~~l~~~~f~~v~l~~~~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~~  108 (232)
T PRK10359         29 LSYNIKTIKVFRNIDDTKVSLIDTDYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLAE  108 (232)
T ss_pred             hhCceEEEEEecCCCceEEEEEecCCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeecc
Confidence            467899999999999999999776777899999976543221  222      57899999999999999999886533 


Q ss_pred             -------CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC
Q 038823          140 -------PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN  212 (338)
Q Consensus       140 -------~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~  212 (338)
                             +..++||||++|.+|.++.         .++.    ....+++.+|..+|   ..+++|||++|+||+++.++
T Consensus       109 ~~~~~~~~~~~lvmEyi~G~tL~~~~---------~~~~----~~~~~i~~~l~~lH---~~gi~H~Dikp~Nili~~~g  172 (232)
T PRK10359        109 RKTLRYAHTYIMLIEYIEGVELNDMP---------EISE----DVKAKIKASIESLH---QHGMVSGDPHKGNFIVSKNG  172 (232)
T ss_pred             cccccccCCeEEEEEEECCccHHHhh---------hccH----HHHHHHHHHHHHHH---HcCCccCCCChHHEEEeCCC
Confidence                   3579999999999998873         2333    24569999999999   99999999999999999988


Q ss_pred             ceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHH
Q 038823          213 VAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELL  271 (338)
Q Consensus       213 ~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~  271 (338)
                       ++|+|||...........              ..+.....++.++|+||||+++..+.
T Consensus       173 -i~liDfg~~~~~~e~~a~--------------d~~vler~y~~~~di~~lg~~~~~~~  216 (232)
T PRK10359        173 -LRIIDLSGKRCTAQRKAK--------------DRIDLERHYGIKNEIKDLGYYLLIYK  216 (232)
T ss_pred             -EEEEECCCcccccchhhH--------------HHHHHHhHhcccccccceeEeehHHH
Confidence             999999987665332211              11344455778999999999987654

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.90  E-value=2.6e-24  Score=180.18  Aligned_cols=232  Identities=18%  Similarity=0.242  Sum_probs=174.8

Q ss_pred             cCCccccCCCceEEEEEECCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCCC
Q 038823           75 ERKFIKQDSTYKLYKGFWQERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTT  153 (338)
Q Consensus        75 ~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gs  153 (338)
                      ...+|.+...|..|+|+|.|..+++|+++-.. +....+.|..|.-.|+-+.||||+.++|.|.....+.++..||+-||
T Consensus       194 l~tkl~e~hsgelwrgrwqgndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp~gs  273 (448)
T KOG0195|consen  194 LITKLAESHSGELWRGRWQGNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMPFGS  273 (448)
T ss_pred             hhhhhccCCCcccccccccCcchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeeccchH
Confidence            34568889999999999987788888876443 33334678889989999999999999999999999999999999999


Q ss_pred             HHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeec-CCCCCceeeCCCCceEEecCCCCcccCCCCcee
Q 038823          154 LRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFG-NLISLCILFNEENVAKLFDFSESISIPEGETHI  232 (338)
Q Consensus       154 L~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~-dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~  232 (338)
                      |+..+.+...   ...+-.++.+++.++++|++|||+-  .+++-| -+.+..+++|++.+++|+- +-++      ...
T Consensus       274 lynvlhe~t~---vvvd~sqav~faldiargmaflhsl--ep~ipr~~lns~hvmidedltarism-ad~k------fsf  341 (448)
T KOG0195|consen  274 LYNVLHEQTS---VVVDHSQAVRFALDIARGMAFLHSL--EPMIPRFYLNSKHVMIDEDLTARISM-ADTK------FSF  341 (448)
T ss_pred             HHHHHhcCcc---EEEecchHHHHHHHHHhhHHHHhhc--chhhhhhhcccceEEecchhhhheec-ccce------eee
Confidence            9999987654   3577889999999999999999953  344444 6889999999999887741 1111      111


Q ss_pred             eeecccccCCcccccccccCCCC---ccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHHHHHHHhcCccccccccc
Q 038823          233 ITRSRFGAWTYSAPEYKRGGVFN---EKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPI  309 (338)
Q Consensus       233 ~~~~~~gt~~y~aPE~~~~~~~~---~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~  309 (338)
                      +.....-.+.||+||.+...+-+   .++|+|||++++|||.|...||....+.+-...+        .-..++.-+.|-
T Consensus       342 qe~gr~y~pawmspealqrkped~n~raadmwsfaillwel~trevpfadlspmecgmki--------aleglrv~ippg  413 (448)
T KOG0195|consen  342 QEVGRAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLSPMECGMKI--------ALEGLRVHIPPG  413 (448)
T ss_pred             eccccccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCCchhhhhhh--------hhccccccCCCC
Confidence            11334457889999999876643   5799999999999999999999877764332221        122333333333


Q ss_pred             cccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          310 IVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       310 l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                      +.            ..+.+|+.-|.++||
T Consensus       414 is------------~hm~klm~icmnedp  430 (448)
T KOG0195|consen  414 IS------------RHMNKLMNICMNEDP  430 (448)
T ss_pred             cc------------HHHHHHHHHHhcCCC
Confidence            32            347888888998887

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.90  E-value=1.5e-23  Score=175.08  Aligned_cols=140  Identities=13%  Similarity=0.125  Sum_probs=108.9

Q ss_pred             CCccccCCCceEEEEEE-CCeEEEEEEeCcCCCc-hH------------------------HHHHHHHHHHHhccCCcce
Q 038823           76 RKFIKQDSTYKLYKGFW-QERLISVMKYNESYSD-SA------------------------CKFSINNIVYAAQMDHKHI  129 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~-~~------------------------~~~~~~e~~~l~~l~h~ni  129 (338)
                      ...||+|++|.||+|.. +|+.||+|++...... ..                        ......|+..+.++.++++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v   81 (190)
T cd05147           2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGI   81 (190)
T ss_pred             CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            46799999999999998 7999999999754211 00                        1223459999999988776


Q ss_pred             eeeeeeeecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHh-hcCCCCCeeecCCCCCceee
Q 038823          130 LKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYL-HVGFPRPIVFGNLISLCILF  208 (338)
Q Consensus       130 v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~L-H~~~~~~iiH~dik~~Nill  208 (338)
                      .....+..  ...++||||++++++........     .++......++.|++.+|.+| |   ..+|+||||||+||++
T Consensus        82 ~~p~~~~~--~~~~iVmE~i~g~~l~~~~~~~~-----~~~~~~~~~i~~qi~~~L~~l~H---~~giiHrDlkP~NIli  151 (190)
T cd05147          82 PCPEPILL--KSHVLVMEFIGDDGWAAPRLKDA-----PLSESKARELYLQVIQIMRILYQ---DCRLVHADLSEYNLLY  151 (190)
T ss_pred             CCCcEEEe--cCCEEEEEEeCCCCCcchhhhcC-----CCCHHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEE
Confidence            44333222  23489999999887765533322     588999999999999999999 7   7899999999999999


Q ss_pred             CCCCceEEecCCCCcccC
Q 038823          209 NEENVAKLFDFSESISIP  226 (338)
Q Consensus       209 ~~~~~~kl~Dfg~a~~~~  226 (338)
                      + ++.++|+|||+|....
T Consensus       152 ~-~~~v~LiDFG~a~~~~  168 (190)
T cd05147         152 H-DGKLYIIDVSQSVEHD  168 (190)
T ss_pred             E-CCcEEEEEccccccCC
Confidence            8 5789999999987543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.89  E-value=2.4e-22  Score=168.20  Aligned_cols=141  Identities=13%  Similarity=0.143  Sum_probs=111.0

Q ss_pred             CCccccCCCceEEEEEE-CCeEEEEEEeCcCCCch-------------------------HHHHHHHHHHHHhccCCcce
Q 038823           76 RKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDS-------------------------ACKFSINNIVYAAQMDHKHI  129 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~-------------------------~~~~~~~e~~~l~~l~h~ni  129 (338)
                      ...||+|++|.||+|.+ +|+.||+|++.......                         ....+..|...+.++.|+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   81 (190)
T cd05145           2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV   81 (190)
T ss_pred             CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            46799999999999998 79999999987652110                         01234678999999999987


Q ss_pred             eeeeeeeecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CCeeecCCCCCceee
Q 038823          130 LKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFP-RPIVFGNLISLCILF  208 (338)
Q Consensus       130 v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~-~~iiH~dik~~Nill  208 (338)
                      .....+...  ..++||||++|+++........     .++......++.+++.++.+||   . .+|+||||||+||++
T Consensus        82 ~~p~~~~~~--~~~lVmE~~~g~~~~~~~l~~~-----~~~~~~~~~i~~~l~~~l~~lH---~~~givHrDlkP~NIll  151 (190)
T cd05145          82 PVPEPILLK--KNVLVMEFIGDDGSPAPRLKDV-----PLEEEEAEELYEQVVEQMRRLY---QEAGLVHGDLSEYNILY  151 (190)
T ss_pred             CCceEEEec--CCEEEEEEecCCCchhhhhhhc-----cCCHHHHHHHHHHHHHHHHHHH---HhCCEecCCCChhhEEE
Confidence            544433332  2489999999876543322221     5778899999999999999999   7 999999999999999


Q ss_pred             CCCCceEEecCCCCcccCC
Q 038823          209 NEENVAKLFDFSESISIPE  227 (338)
Q Consensus       209 ~~~~~~kl~Dfg~a~~~~~  227 (338)
                      + ++.++|+|||++.....
T Consensus       152 ~-~~~~~liDFG~a~~~~~  169 (190)
T cd05145         152 H-DGKPYIIDVSQAVELDH  169 (190)
T ss_pred             E-CCCEEEEEcccceecCC
Confidence            8 88999999999987654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.88  E-value=5.8e-22  Score=164.40  Aligned_cols=190  Identities=13%  Similarity=0.002  Sum_probs=141.6

Q ss_pred             CcCCccccCCCceEEEEEECCeEEEEEEeCcCCC---chHHHHHHHHHHHHhccC-CcceeeeeeeeecCCcceEEEeec
Q 038823           74 DERKFIKQDSTYKLYKGFWQERLISVMKYNESYS---DSACKFSINNIVYAAQMD-HKHILKLIGCCLETPIPILVFEYG  149 (338)
Q Consensus        74 ~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~---~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~  149 (338)
                      .+...|++|+||+||.+...+.+++.+.+....-   ......+.+|+++|++|. |+++++++++    +..+++|||+
T Consensus         5 ~~~~~l~~~~f~~v~~~~~~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvmeyI   80 (218)
T PRK12274          5 AVNEPLKSDTFGRILLVRGGERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDRSYL   80 (218)
T ss_pred             ccceeecCCCcceEEEeecCCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEEeee
Confidence            4567899999999998877888888877765422   111235789999999995 5889999886    3468999999


Q ss_pred             CCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCC-CCCceeeCCCCceEEecCCCCcccCCC
Q 038823          150 EYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNL-ISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       150 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~di-k~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      .|.+|...+..            ....++.|++.+|.++|   ..+|+|||| ||+|||++.++.++|+|||++......
T Consensus        81 ~G~~L~~~~~~------------~~~~~~~qi~~~L~~lH---~~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~~  145 (218)
T PRK12274         81 AGAAMYQRPPR------------GDLAYFRAARRLLQQLH---RCGVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPR  145 (218)
T ss_pred             cCccHHhhhhh------------hhHHHHHHHHHHHHHHH---HCcCccCCCCCcceEEEcCCCCEEEEECCCceecCCc
Confidence            99888654311            11357789999999999   999999999 799999999999999999999865543


Q ss_pred             Cce----e-------eeecccccCCcccccccccC-CCC-ccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          229 ETH----I-------ITRSRFGAWTYSAPEYKRGG-VFN-EKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       229 ~~~----~-------~~~~~~gt~~y~aPE~~~~~-~~~-~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ...    .       .......++.|++|+-..-- ..+ ...++++-|.-+|.++||+.|+-..+.
T Consensus       146 ~~~~r~L~~rDl~~llk~~~~y~~~~l~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~~~~~  212 (218)
T PRK12274        146 ARWMRLLAREDLRHLLKHKRMYCPAALTPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLHWEDNE  212 (218)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhhccchhHHHHHHHhcchHHHHHhccCCccccCC
Confidence            210    0       00112256677777643321 233 567999999999999999998765443

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=7.3e-23  Score=197.31  Aligned_cols=200  Identities=14%  Similarity=0.176  Sum_probs=159.0

Q ss_pred             CcCCccccCCCceEEEEEE--CCeEEEEEEeC----cCCCc-hHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           74 DERKFIKQDSTYKLYKGFW--QERLISVMKYN----ESYSD-SACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        74 ~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~----~~~~~-~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      .....+|.|.+|.|+....  .......|.+.    ..... .....+..|+.+-..++|+|++..+..+.+.....-+|
T Consensus       321 ~~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~m  400 (601)
T KOG0590|consen  321 KPGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGILQSM  400 (601)
T ss_pred             CccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccchhhh
Confidence            3567899999998877766  33333333332    22121 22233667777888899999998888887776666669


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      |||++ +|+.++....     .+....+-.++.|++.|+.|||   ..+|.|||+|++|+++..+|.+||+|||.+....
T Consensus       401 E~~~~-Dlf~~~~~~~-----~~~~~e~~c~fKqL~~Gv~y~h---~~GiahrdlK~enll~~~~g~lki~Dfg~~~vf~  471 (601)
T KOG0590|consen  401 EYCPY-DLFSLVMSNG-----KLTPLEADCFFKQLLRGVKYLH---SMGLAHRDLKLENLLVTENGILKIIDFGAASVFR  471 (601)
T ss_pred             hcccH-HHHHHHhccc-----ccchhhhhHHHHHHHHHHHHHH---hcCceeccCccccEEEecCCceEEeecCcceeec
Confidence            99998 9999998764     4788889999999999999999   9999999999999999999999999999987654


Q ss_pred             CCCce--eeeecccccCCcccccccccCCCCc-cchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          227 EGETH--IITRSRFGAWTYSAPEYKRGGVFNE-KLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       227 ~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~-~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      -....  .......|+..|+|||.+....|++ ..||||.|+++..|++|+.||.....
T Consensus       472 ~~~e~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~  530 (601)
T KOG0590|consen  472 YPWEKNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKK  530 (601)
T ss_pred             cCcchhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCccccccc
Confidence            43322  3346778999999999999999876 48999999999999999999975544

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.86  E-value=1e-21  Score=181.51  Aligned_cols=200  Identities=27%  Similarity=0.330  Sum_probs=152.9

Q ss_pred             HhccCCcceeeeeeeeecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCe-eec
Q 038823          121 AAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPI-VFG  199 (338)
Q Consensus       121 l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~i-iH~  199 (338)
                      |+.+.|.|+.+++|.+.++...+.|.+||..|+|.|.+.....    .+++.....+.++++.||.|||+   -+| .|+
T Consensus         1 l~~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~~~----~~d~~F~~s~~rdi~~Gl~ylh~---s~i~~hg   73 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSNEDI----KLDYFFILSFIRDISKGLAYLHN---SPIGYHG   73 (484)
T ss_pred             CcccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhcccc----CccHHHHHHHHHHHHHHHHHHhc---Ccceeee
Confidence            4678899999999999999999999999999999999988654    79999999999999999999995   344 999


Q ss_pred             CCCCCceeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCC-------CCccchHHHHHHHHHHHHh
Q 038823          200 NLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGV-------FNEKLDVYTFSTVLLELLT  272 (338)
Q Consensus       200 dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-------~~~~~Dv~s~Gv~l~el~t  272 (338)
                      .+++.|.++|..+.+||+|||+.................-..-|.|||.+....       .+.+.||||||++++|+++
T Consensus        74 ~l~s~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~  153 (484)
T KOG1023|consen   74 ALKSSNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILF  153 (484)
T ss_pred             eeccccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHh
Confidence            999999999999999999999987765311111112223456799999987641       4678999999999999999


Q ss_pred             CCCCcCCccCCcccccHHHHHHHHHhcCccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          273 GQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       273 G~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                      .+.||+..........++..++.     .....+.|.+...      .+...+++.++..||..+|
T Consensus       154 r~~~~~~~~~~~~~~eii~~~~~-----~~~~~~rP~i~~~------~e~~~~l~~l~~~cw~e~P  208 (484)
T KOG1023|consen  154 RSGPFDLRNLVEDPDEIILRVKK-----GGSNPFRPSIELL------NELPPELLLLVARCWEEIP  208 (484)
T ss_pred             ccCccccccccCChHHHHHHHHh-----cCCCCcCcchhhh------hhcchHHHHHHHHhcccCh
Confidence            99999975553333334444333     1222233333221      0223369999999999987

>PRK10345 hypothetical protein; Provisional

Probab=99.86  E-value=6.9e-21  Score=160.56  Aligned_cols=137  Identities=16%  Similarity=0.073  Sum_probs=105.8

Q ss_pred             CCcCCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-----CCcceeeeeeeeecCC---c-ce
Q 038823           73 YDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQM-----DHKHILKLIGCCLETP---I-PI  143 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-----~h~niv~l~~~~~~~~---~-~~  143 (338)
                      .+...+||+|+||.||.-..++.. +||++.... ....+.+.+|+.+++.+     .||||++++|++.++.   . ..
T Consensus         4 L~~~~~LG~G~~~~Vy~hp~~~~k-~IKv~~~~~-~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~   81 (210)
T PRK10345          4 LSEQSPLGTGRHRKCYAHPEDAQR-CIKIVYHRG-DGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYD   81 (210)
T ss_pred             cCCcceecCCCceEEEECCCCcCe-EEEEEeccc-cchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEE
Confidence            445678999999999962224444 688886542 22346789999999999     5799999999998763   3 34


Q ss_pred             EEEee--cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHH-HHhhcCCCCCeeecCCCCCceeeCC----CCceEE
Q 038823          144 LVFEY--GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHAL-AYLHVGFPRPIVFGNLISLCILFNE----ENVAKL  216 (338)
Q Consensus       144 lv~e~--~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l-~~LH~~~~~~iiH~dik~~Nill~~----~~~~kl  216 (338)
                      +|+||  +.+++|.+++.+.      .+++.  ..++.+++.++ .|||   +.+|+||||||+|||++.    ++.++|
T Consensus        82 ~I~e~~G~~~~tL~~~l~~~------~~~e~--~~~~~~~L~~l~~yLh---~~~IvhrDlKp~NILl~~~~~~~~~~~L  150 (210)
T PRK10345         82 VIADFDGKPSITLTEFAEQC------RYEED--VAQLRQLLKKLKRYLL---DNRIVTMELKPQNILCQRISESEVIPVV  150 (210)
T ss_pred             EEecCCCCcchhHHHHHHcc------cccHh--HHHHHHHHHHHHHHHH---HCCEeecCCCHHHEEEeccCCCCCcEEE
Confidence            78999  5589999999653      25554  35678888887 9999   999999999999999974    347999


Q ss_pred             ecCCCC
Q 038823          217 FDFSES  222 (338)
Q Consensus       217 ~Dfg~a  222 (338)
                      +||+.+
T Consensus       151 iDg~G~  156 (210)
T PRK10345        151 CDNIGE  156 (210)
T ss_pred             EECCCC
Confidence            995443

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=1.5e-21  Score=192.36  Aligned_cols=242  Identities=15%  Similarity=0.186  Sum_probs=182.1

Q ss_pred             HHHHHhhcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC---CcceeeeeeeeecC
Q 038823           64 KELEIATNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMD---HKHILKLIGCCLET  139 (338)
Q Consensus        64 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~---h~niv~l~~~~~~~  139 (338)
                      .+.+.....|.+.+.||+|+||.||+|.. +++.||+|.-+....-.    |.--.+++.+|+   -+-|.++..+..-.
T Consensus       691 ~~~~~~~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~WE----fYI~~q~~~RLk~~~~~~~~~~~~a~~~~  766 (974)
T KOG1166|consen  691 TEFEVGGEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNPWE----FYICLQVMERLKPQMLPSIMHISSAHVFQ  766 (974)
T ss_pred             ceeeecceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCcee----eeehHHHHHhhchhhhcchHHHHHHHccC
Confidence            45666777899999999999999999999 88999999987653221    111223344444   34566666666667


Q ss_pred             CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC-------CC
Q 038823          140 PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE-------EN  212 (338)
Q Consensus       140 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~-------~~  212 (338)
                      +..+||+||.+.|+|.+++....     .+++...+.++.|++..+..||   ..+|||+||||+|++|..       +.
T Consensus       767 ~~S~lv~ey~~~Gtlld~~N~~~-----~m~e~lv~~~~~qml~ive~lH---~~~IIHgDiKPDNfll~~~~~~~~~~~  838 (974)
T KOG1166|consen  767 NASVLVSEYSPYGTLLDLINTNK-----VMDEYLVMFFSCQMLRIVEHLH---AMGIIHGDIKPDNFLLRREICADSDSK  838 (974)
T ss_pred             CcceeeeeccccccHHHhhccCC-----CCCchhhhHHHHHHHHHHHHHH---hcceecccCCcceeEeecccCCCCccc
Confidence            78899999999999999998443     6999999999999999999999   999999999999999942       34


Q ss_pred             ceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHH
Q 038823          213 VAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEY  292 (338)
Q Consensus       213 ~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~  292 (338)
                      .++|+|||.+.-+..-.....-....+|-.+-.+|...+.+++..+|.|.++.+++.|+.|+.-=  ..+ +..-.+..-
T Consensus       839 ~l~lIDfG~siDm~lfp~~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y~q--~~~-g~~~~~~~~  915 (974)
T KOG1166|consen  839 GLYLIDFGRSIDMKLFPDGTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKYME--VKN-GSSWMVKTN  915 (974)
T ss_pred             ceEEEecccceeeeEcCCCcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHHHH--hcC-Ccceecccc
Confidence            59999999986543221111125667888999999999999999999999999999999998542  111 111222222


Q ss_pred             HHHHHhcCccccccccccccCcCCcccH
Q 038823          293 LKNYLQNNRFTEIADPIIVQDLSCTETE  320 (338)
Q Consensus       293 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~  320 (338)
                      ++.++..+-+..+++..|+.+..+.+..
T Consensus       916 ~~Ry~~~~~W~~~F~~lLN~~~~~~p~l  943 (974)
T KOG1166|consen  916 FPRYWKRDMWNKFFDLLLNPDCDTLPNL  943 (974)
T ss_pred             chhhhhHHHHHHHHHHHhCcCcccchhH
Confidence            6777888888888888888554433333

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.85  E-value=1.5e-22  Score=187.47  Aligned_cols=185  Identities=19%  Similarity=0.125  Sum_probs=158.3

Q ss_pred             cccCCCceEEEEEE-----CCeEEEEEEeCcCCCc-hHHHHHHHHHHHHhccC-CcceeeeeeeeecCCcceEEEeecCC
Q 038823           79 IKQDSTYKLYKGFW-----QERLISVMKYNESYSD-SACKFSINNIVYAAQMD-HKHILKLIGCCLETPIPILVFEYGEY  151 (338)
Q Consensus        79 lg~G~~g~Vy~~~~-----~~~~vaik~~~~~~~~-~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~  151 (338)
                      +|+|.||.|+++.-     .+..++.|...+.... ........|..++..++ ||.++++...+..+...+++.++..+
T Consensus         2 lg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~rg   81 (612)
T KOG0603|consen    2 LGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFLRG   81 (612)
T ss_pred             CCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhccc
Confidence            79999999987543     5667888877654311 11125667888888887 99999999999999999999999999


Q ss_pred             CCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCce
Q 038823          152 TTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH  231 (338)
Q Consensus       152 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~  231 (338)
                      |.|...+....     .+.+.....+...++-|++++|   +.+|+|||+|++||+++.+|++++.|||+++..-.... 
T Consensus        82 g~lft~l~~~~-----~f~~~~~~~~~aelaLald~lh---~l~iiyrd~k~enilld~~Ghi~~tdfglske~v~~~~-  152 (612)
T KOG0603|consen   82 GDLFTRLSKEV-----MFDELDVAFYLAELALALDHLH---KLGIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEKI-  152 (612)
T ss_pred             chhhhccccCC-----chHHHHHHHHHHHHHHHHhhcc---hhHHHHhcccccceeecccCccccCCchhhhHhHhhhh-
Confidence            99999887765     5888888899999999999999   99999999999999999999999999999987755432 


Q ss_pred             eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          232 IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       232 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                           ..||..|||||++.  .....+|.||||++++||+||..||..
T Consensus       153 -----~cgt~eymApEI~~--gh~~a~D~ws~gvl~felltg~~pf~~  193 (612)
T KOG0603|consen  153 -----ACGTYEYRAPEIIN--GHLSAADWWSFGVLAFELLTGTLPFGG  193 (612)
T ss_pred             -----cccchhhhhhHhhh--ccCCcccchhhhhhHHHHhhCCCCCch
Confidence                 27899999999988  567889999999999999999999975

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.84  E-value=7.5e-22  Score=191.85  Aligned_cols=239  Identities=21%  Similarity=0.208  Sum_probs=182.9

Q ss_pred             CCCcCCccccCCCceEEEEEECCeEEEEEEeCcCCCchHH---HHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           72 NYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSAC---KFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~---~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      ++...+-||.+.|=.|.+|+.+.+.|++|++-+....-..   .+.+.|++ ...++|||.+++.-+-......|||-+|
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~eG~vVvKVFvk~~p~~sL~~~~qrL~~ik-~~l~~~pn~lPfqk~~~t~kAAylvRqy  102 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDREGLVVVKVFVKQDPTISLRPFKQRLEEIK-FALMKAPNCLPFQKVLVTDKAAYLVRQY  102 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCCceEEEEEEeccCCCCCchHHHHHHHHHH-HHhhcCCcccchHHHHHhhHHHHHHHHH
Confidence            5777788999999999999997677999999766433333   33344454 4556899999998887777888999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc--C
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI--P  226 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~--~  226 (338)
                      .. -+|.|.+.-.+     -+.......|+.|++.||..+|   ..+|+|+|||.+|||+++=.=+.|+||..=+..  +
T Consensus       103 vk-hnLyDRlSTRP-----FL~~iEKkWiaFQLL~al~qcH---~~gVcHGDIKsENILiTSWNW~~LtDFAsFKPtYLP  173 (1431)
T KOG1240|consen  103 VK-HNLYDRLSTRP-----FLVLIEKKWIAFQLLKALSQCH---KLGVCHGDIKSENILITSWNWLYLTDFASFKPTYLP  173 (1431)
T ss_pred             Hh-hhhhhhhccch-----HHHHHHHHHHHHHHHHHHHHHH---HcCccccccccceEEEeeechhhhhcccccCCccCC
Confidence            98 69999997664     4778888999999999999999   999999999999999998777899999743322  2


Q ss_pred             CCC----ceeeeecccccCCcccccccccC----------C-CCccchHHHHHHHHHHHHh-CCCCcCCccCC---cccc
Q 038823          227 EGE----THIITRSRFGAWTYSAPEYKRGG----------V-FNEKLDVYTFSTVLLELLT-GQSTRDLLRTH---GSVR  287 (338)
Q Consensus       227 ~~~----~~~~~~~~~gt~~y~aPE~~~~~----------~-~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~~---~~~~  287 (338)
                      .+.    +....+... -..|+|||.+...          . .+++.||||+||++.||++ |++||...+--   ....
T Consensus       174 eDNPadf~fFFDTSrR-RtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~LSQL~aYr~~~~  252 (1431)
T KOG1240|consen  174 EDNPADFTFFFDTSRR-RTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTLSQLLAYRSGNA  252 (1431)
T ss_pred             CCCcccceEEEecCCc-eeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccHHHHHhHhccCc
Confidence            111    111112222 2359999987541          2 6789999999999999999 79998643211   1124


Q ss_pred             cHHHHHHHHHhcCccccccccccccCcCCcccHH
Q 038823          288 HLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEH  321 (338)
Q Consensus       288 ~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~  321 (338)
                      ...+...+.+++..+++++-.++..||..|.+.+
T Consensus       253 ~~~e~~Le~Ied~~~Rnlil~Mi~rdPs~RlSAe  286 (1431)
T KOG1240|consen  253 DDPEQLLEKIEDVSLRNLILSMIQRDPSKRLSAE  286 (1431)
T ss_pred             cCHHHHHHhCcCccHHHHHHHHHccCchhccCHH
Confidence            5667778888889999999999999988887754

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.83  E-value=9.8e-20  Score=155.04  Aligned_cols=136  Identities=17%  Similarity=0.157  Sum_probs=115.4

Q ss_pred             CccccCCCceEEEEEECCeEEEEEEeCcCCC-ch------HHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeec
Q 038823           77 KFIKQDSTYKLYKGFWQERLISVMKYNESYS-DS------ACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYG  149 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~-~~------~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  149 (338)
                      +.||+|++|.||+|.+.+..+++|....... ..      ....+.+|+.++..+.|++++....++...+..++||||+
T Consensus         2 ~~l~~G~~~~vy~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~   81 (211)
T PRK14879          2 KLIKRGAEAEIYLGDFLGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEYI   81 (211)
T ss_pred             cccccCceEEEEEEeeCCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEEe
Confidence            5799999999999999888999998764321 11      1245788999999999999888777777777889999999


Q ss_pred             CCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          150 EYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       150 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      +|++|.+++...        .+ .+..++.+++.+|.+||   ..+++|+|++|.||+++ ++.++|+|||.+...
T Consensus        82 ~G~~L~~~~~~~--------~~-~~~~i~~~i~~~l~~lH---~~~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~~  144 (211)
T PRK14879         82 EGEPLKDLINSN--------GM-EELELSREIGRLVGKLH---SAGIIHGDLTTSNMILS-GGKIYLIDFGLAEFS  144 (211)
T ss_pred             CCcCHHHHHHhc--------cH-HHHHHHHHHHHHHHHHH---hCCcccCCCCcccEEEE-CCCEEEEECCcccCC
Confidence            999999998542        12 78899999999999999   99999999999999999 789999999988763

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.83  E-value=7.3e-20  Score=154.40  Aligned_cols=132  Identities=17%  Similarity=0.144  Sum_probs=108.9

Q ss_pred             ccccCCCceEEEEEECCeEEEEEEeCcCC-Cc------hHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecC
Q 038823           78 FIKQDSTYKLYKGFWQERLISVMKYNESY-SD------SACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGE  150 (338)
Q Consensus        78 ~lg~G~~g~Vy~~~~~~~~vaik~~~~~~-~~------~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~  150 (338)
                      +||+|++|.||+|.+++..+++|...... ..      ....++.+|++++..++|+++.....++...+..++||||++
T Consensus         1 ~ig~G~~~~vy~~~~~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~~   80 (199)
T TIGR03724         1 LIAKGAEAIIYLGDFLGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYIE   80 (199)
T ss_pred             CCCCCceEEEEEeecCCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEEC
Confidence            48999999999999988899999865432 11      123567789999999998876655555566667899999999


Q ss_pred             CCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          151 YTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       151 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |++|.+++....      .      .++.+++.+|.+||   ..+++|+|++|.||+++ ++.++++|||++...
T Consensus        81 g~~l~~~~~~~~------~------~~~~~i~~~l~~lH---~~gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~~  139 (199)
T TIGR03724        81 GKPLKDVIEEGN------D------ELLREIGRLVGKLH---KAGIVHGDLTTSNIIVR-DDKLYLIDFGLGKYS  139 (199)
T ss_pred             CccHHHHHhhcH------H------HHHHHHHHHHHHHH---HCCeecCCCCcceEEEE-CCcEEEEECCCCcCC
Confidence            999998874421      1      78999999999999   99999999999999999 889999999988664

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>smart00090 RIO RIO-like kinase

Probab=99.82  E-value=7.5e-20  Score=157.85  Aligned_cols=149  Identities=14%  Similarity=0.120  Sum_probs=114.6

Q ss_pred             HHHhhcCCCcCCccccCCCceEEEEE-E--CCeEEEEEEeCcCCCc-----------------------hHHHHHHHHHH
Q 038823           66 LEIATNNYDERKFIKQDSTYKLYKGF-W--QERLISVMKYNESYSD-----------------------SACKFSINNIV  119 (338)
Q Consensus        66 ~~~~~~~~~~~~~lg~G~~g~Vy~~~-~--~~~~vaik~~~~~~~~-----------------------~~~~~~~~e~~  119 (338)
                      +..-...|++.+.||+|++|.||+|. .  +|+.||+|++......                       .....+.+|+.
T Consensus        23 ~~~~~~~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~  102 (237)
T smart00090       23 LLNRGILSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFR  102 (237)
T ss_pred             HHhcCchHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHH
Confidence            34444457888999999999999998 3  8899999998754210                       01123568999


Q ss_pred             HHhccCCc--ceeeeeeeeecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC-e
Q 038823          120 YAAQMDHK--HILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRP-I  196 (338)
Q Consensus       120 ~l~~l~h~--niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~-i  196 (338)
                      .+.++.+.  .+++++++    ...++||||+++.+|........     .+.......++.|++.++.+||   ..+ +
T Consensus       103 ~L~~L~~~~i~~p~~~~~----~~~~lV~E~~~g~~L~~~~~~~~-----~~~~~~~~~i~~qi~~~l~~LH---~~g~i  170 (237)
T smart00090      103 NLQRLYEAGVPVPKPIAW----RRNVLVMEFIGGDGLPAPRLKDV-----EPEEEEEFELYDDILEEMRKLY---KEGEL  170 (237)
T ss_pred             HHHHHHhcCCCCCeeeEe----cCceEEEEEecCCcccccccccC-----CcchHHHHHHHHHHHHHHHHHH---hcCCE
Confidence            99999753  34455543    23589999999988876543322     4566677899999999999999   899 9


Q ss_pred             eecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          197 VFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       197 iH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      +|+||||+||+++ ++.++|+|||.+.....
T Consensus       171 iH~Dikp~NIli~-~~~i~LiDFg~a~~~~~  200 (237)
T smart00090      171 VHGDLSEYNILVH-DGKVVIIDVSQSVELDH  200 (237)
T ss_pred             EeCCCChhhEEEE-CCCEEEEEChhhhccCC
Confidence            9999999999999 88999999998875543

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.82  E-value=5.5e-20  Score=160.32  Aligned_cols=200  Identities=15%  Similarity=0.152  Sum_probs=132.2

Q ss_pred             CCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCC----------cceeeeeeeee-
Q 038823           73 YDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDH----------KHILKLIGCCL-  137 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h----------~niv~l~~~~~-  137 (338)
                      +.....||.|+++.||.+++  +++.+++|.+....  .....+.+.+|.-....+.+          -.++--++... 
T Consensus        14 l~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~i   93 (288)
T PF14531_consen   14 LVRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLRI   93 (288)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEEE
T ss_pred             EEEccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEEE
Confidence            44567899999999999999  78999999986443  23345666666655554332          12222222111 


Q ss_pred             --------cC---C-----cceEEEeecCCCCHHHhhhc---CCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeee
Q 038823          138 --------ET---P-----IPILVFEYGEYTTLRDRIFG---APQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVF  198 (338)
Q Consensus       138 --------~~---~-----~~~lv~e~~~~gsL~~~l~~---~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH  198 (338)
                              ..   +     ..+++|+-+. +||.+++.-   .... ...+....++.+..|+++.+++||   ..+++|
T Consensus        94 ~~~~~~~~~~~~~~~~~v~n~~~l~P~~~-~dL~~~~~~l~~~~~~-~~~l~~~arl~lT~Q~I~lvA~Lh---~~GlVH  168 (288)
T PF14531_consen   94 PGKPPFFERGPGQSIYWVLNRFLLMPRAQ-GDLQDLVEALFSRAQT-HSPLAFAARLSLTVQMIRLVANLH---SYGLVH  168 (288)
T ss_dssp             TTS-SEEEECETTEEEEEESEEEEEE--S-EEHHHHHHHHHHHTTT-SHHHHHHHHHHHHHHHHHHHHHHH---HTTEEE
T ss_pred             cCCCcceecCCCCccceeehhhhccchhh-hcHHHHHHHHhhcccc-cchhHHHHHHHHHHHHHHHHHHHh---hcceEe
Confidence                    11   1     2367888886 899887542   2211 113455667778899999999999   999999


Q ss_pred             cCCCCCceeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccC--------CCCccchHHHHHHHHHHH
Q 038823          199 GNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGG--------VFNEKLDVYTFSTVLLEL  270 (338)
Q Consensus       199 ~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~--------~~~~~~Dv~s~Gv~l~el  270 (338)
                      +||+|+|++++.+|.++|+||+.....+...     .....+..|.+||.....        .++.+.|.|++|+++|.|
T Consensus       169 gdi~~~nfll~~~G~v~Lg~F~~~~r~g~~~-----~~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~l  243 (288)
T PF14531_consen  169 GDIKPENFLLDQDGGVFLGDFSSLVRAGTRY-----RCSEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSL  243 (288)
T ss_dssp             ST-SGGGEEE-TTS-EEE--GGGEEETTEEE-----EGGGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHH
T ss_pred             cccceeeEEEcCCCCEEEcChHHHeecCcee-----eccCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHH
Confidence            9999999999999999999998665543321     113456789999976432        478999999999999999


Q ss_pred             HhCCCCcCCccC
Q 038823          271 LTGQSTRDLLRT  282 (338)
Q Consensus       271 ~tG~~p~~~~~~  282 (338)
                      ++|+.||.....
T Consensus       244 WC~~lPf~~~~~  255 (288)
T PF14531_consen  244 WCGRLPFGLSSP  255 (288)
T ss_dssp             HHSS-STCCCGG
T ss_pred             HHccCCCCCCCc
Confidence            999999987544

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.80  E-value=3.5e-19  Score=171.96  Aligned_cols=139  Identities=14%  Similarity=0.142  Sum_probs=114.1

Q ss_pred             hcCCCcCCccccCCCceEEEEEECCeEEEEEEeC-cCCCc------hHHHHHHHHHHHHhccCCcceeeeeeeeecCCcc
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFWQERLISVMKYN-ESYSD------SACKFSINNIVYAAQMDHKHILKLIGCCLETPIP  142 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~-~~~~~------~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~  142 (338)
                      ...|...+.||+|+||.||+|.+.+..+++|+.. +....      ...+++.+|++++..++|++++....++.+.+..
T Consensus       332 ~~~~~~~~~iG~G~~g~Vy~~~~~~~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~  411 (535)
T PRK09605        332 KRRKIPDHLIGKGAEADIKKGEYLGRDAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEEK  411 (535)
T ss_pred             ccccCccceeccCCcEEEEEEeecCccceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCCC
Confidence            3445667899999999999999965555555432 21111      1235688999999999999999888888777788


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSES  222 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a  222 (338)
                      ++||||+++++|.+++.             ....++.+++.+|.+||   ..+++||||||+||++ .++.++|+|||++
T Consensus       412 ~lv~E~~~g~~L~~~l~-------------~~~~~~~~i~~~L~~lH---~~giiHrDlkp~NILl-~~~~~~liDFGla  474 (535)
T PRK09605        412 TIVMEYIGGKDLKDVLE-------------GNPELVRKVGEIVAKLH---KAGIVHGDLTTSNFIV-RDDRLYLIDFGLG  474 (535)
T ss_pred             EEEEEecCCCcHHHHHH-------------HHHHHHHHHHHHHHHHH---hCCCccCCCChHHEEE-ECCcEEEEeCccc
Confidence            99999999999998873             34678999999999999   8999999999999999 6789999999998


Q ss_pred             ccc
Q 038823          223 ISI  225 (338)
Q Consensus       223 ~~~  225 (338)
                      +..
T Consensus       475 ~~~  477 (535)
T PRK09605        475 KYS  477 (535)
T ss_pred             ccC
Confidence            764

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.80  E-value=5.7e-19  Score=148.85  Aligned_cols=146  Identities=12%  Similarity=0.064  Sum_probs=113.4

Q ss_pred             HHHHHhhcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCc---------------------hHHHHHHHHHHHH
Q 038823           64 KELEIATNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSD---------------------SACKFSINNIVYA  121 (338)
Q Consensus        64 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~---------------------~~~~~~~~e~~~l  121 (338)
                      .++......|...+.||+|+||.||+|.. +++.||+|++......                     .....+..|..++
T Consensus         8 ~~~~~~~~~~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l   87 (198)
T cd05144           8 HTLVKRGVVESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAAL   87 (198)
T ss_pred             HHHHHcCchhhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHH
Confidence            34555555588889999999999999998 7999999987643210                     0112357788999


Q ss_pred             hccCCc--ceeeeeeeeecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeec
Q 038823          122 AQMDHK--HILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFG  199 (338)
Q Consensus       122 ~~l~h~--niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~  199 (338)
                      ..+.|+  .+++.++.    ...++||||++|++|......           .....++.+++.++.++|   ..+++|+
T Consensus        88 ~~l~~~~i~v~~~~~~----~~~~lv~e~~~g~~L~~~~~~-----------~~~~~~~~~i~~~l~~lh---~~gi~H~  149 (198)
T cd05144          88 KALYEEGFPVPKPIDW----NRHAVVMEYIDGVELYRVRVL-----------EDPEEVLDEILEEIVKAY---KHGIIHG  149 (198)
T ss_pred             HHHHHcCCCCCceeec----CCceEEEEEeCCcchhhcccc-----------ccHHHHHHHHHHHHHHHH---HCCCCcC
Confidence            999877  44555442    355899999999998765421           234578899999999999   8999999


Q ss_pred             CCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          200 NLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       200 dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      ||+|+||+++.++.++|+|||.+.....
T Consensus       150 Dl~p~Nill~~~~~~~liDfg~~~~~~~  177 (198)
T cd05144         150 DLSEFNILVDDDEKIYIIDWPQMVSTDH  177 (198)
T ss_pred             CCCcccEEEcCCCcEEEEECCccccCCC
Confidence            9999999999999999999999865543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.76  E-value=1.3e-18  Score=153.21  Aligned_cols=145  Identities=17%  Similarity=0.162  Sum_probs=113.5

Q ss_pred             CCcceeeeeeeeecC---------------------------CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHH
Q 038823          125 DHKHILKLIGCCLET---------------------------PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKV  177 (338)
Q Consensus       125 ~h~niv~l~~~~~~~---------------------------~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i  177 (338)
                      +|||||++.++|.+.                           ..+|+||..++ .+|..++-..      ..+.....-+
T Consensus       274 ~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~-~tLr~yl~~~------~~s~r~~~~~  346 (598)
T KOG4158|consen  274 KHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYR-QTLREYLWTR------HRSYRTGRVI  346 (598)
T ss_pred             CCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcch-hhHHHHHhcC------CCchHHHHHH
Confidence            499999999988642                           13689999988 6999998665      4778888999


Q ss_pred             HHHHHHHHHHhhcCCCCCeeecCCCCCceeeC--CCC--ceEEecCCCCcccCCCCc----eeeeecccccCCccccccc
Q 038823          178 AMGIAHALAYLHVGFPRPIVFGNLISLCILFN--EEN--VAKLFDFSESISIPEGET----HIITRSRFGAWTYSAPEYK  249 (338)
Q Consensus       178 ~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~--~~~--~~kl~Dfg~a~~~~~~~~----~~~~~~~~gt~~y~aPE~~  249 (338)
                      +.|+++|+.|||   ..+|.|||+|++|||+.  +|+  .+.|+|||++.......-    ....-...|.-.-||||+.
T Consensus       347 laQlLEav~hL~---~hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~  423 (598)
T KOG4158|consen  347 LAQLLEAVTHLH---KHGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIA  423 (598)
T ss_pred             HHHHHHHHHHHH---HccchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchhhh
Confidence            999999999999   99999999999999994  443  478999998754322100    0111234477788999998


Q ss_pred             ccCC------CCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          250 RGGV------FNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       250 ~~~~------~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ...+      --.|+|.|+.|.+.||+++..-||..
T Consensus       424 ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~  459 (598)
T KOG4158|consen  424 TAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYK  459 (598)
T ss_pred             hcCCCCceeeccchhhhhhhhhhHHHHhccCCcccc
Confidence            6533      12589999999999999999999986

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.76  E-value=6.9e-18  Score=135.23  Aligned_cols=136  Identities=15%  Similarity=0.072  Sum_probs=115.0

Q ss_pred             cCCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCC--cceeeeeeeeecCCcceEEEeecCCC
Q 038823           75 ERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDH--KHILKLIGCCLETPIPILVFEYGEYT  152 (338)
Q Consensus        75 ~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h--~niv~l~~~~~~~~~~~lv~e~~~~g  152 (338)
                      +.+.||+|.++.||++...+..+++|.......   ...+.+|+.++..++|  .++++++++....+..+++|||++++
T Consensus         2 ~~~~i~~g~~~~v~~~~~~~~~~~iK~~~~~~~---~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~   78 (155)
T cd05120           2 SIKLLKGGLTNRVYLLGTKDEDYVLKINPSREK---GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGE   78 (155)
T ss_pred             cceecccccccceEEEEecCCeEEEEecCCCCc---hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCCe
Confidence            356799999999999999778899999876533   3578899999999976  58999999988888899999999987


Q ss_pred             CHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          153 TLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       153 sL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      ++..+            +......++.+++.+|.+||.....+++|+|++|.||++++.+.+++.|||.+...
T Consensus        79 ~~~~~------------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~~  139 (155)
T cd05120          79 TLDEV------------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGYG  139 (155)
T ss_pred             ecccC------------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccCC
Confidence            77543            44667788999999999999443357999999999999999899999999988654

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.73  E-value=6.4e-18  Score=164.53  Aligned_cols=168  Identities=18%  Similarity=0.202  Sum_probs=124.8

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ..++|...+++..|+||.||..+.  ..+.+|+ ++++.      ..+.+-  ++.....|.+|                
T Consensus        81 ~e~df~~IklisngAygavylvrh~~trqrfa~-kiNkq------~lilRn--ilt~a~npfvv----------------  135 (1205)
T KOG0606|consen   81 SESDFNTIKLISNGAYGAVYLVRHKETRQRFAM-KINKQ------NLILRN--ILTFAGNPFVV----------------  135 (1205)
T ss_pred             CccccceeEeeccCCCCceeeeeccccccchhh-ccccc------chhhhc--cccccCCccee----------------
Confidence            357899999999999999999987  5777888 44332      111110  22222233333                


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                           |+-...+..-+     +++..        ++.+++|||   +.+|+|||+||+|.++..-|++|++|||++....
T Consensus       136 -----gDc~tllk~~g-----~lPvd--------mvla~Eylh---~ygivhrdlkpdnllIT~mGhiKlTDfgLsk~GL  194 (1205)
T KOG0606|consen  136 -----GDCATLLKNIG-----PLPVD--------MVLAVEYLH---SYGIVHRDLKPDNLLITSMGHIKLTDFGLSKKGL  194 (1205)
T ss_pred             -----chhhhhcccCC-----CCcch--------hhHHhHhhc---cCCeecCCCCCCcceeeecccccccchhhhhhhh
Confidence                 45555554433     33332        388999999   9999999999999999999999999999976543


Q ss_pred             CCCc-------------eeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          227 EGET-------------HIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       227 ~~~~-------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ...+             ........||+.|.|||++....|...+|+|++|+++||.+-|..||....+
T Consensus       195 ms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVilrqgygkpvdwwamGiIlyeFLVgcvpffGdtp  263 (1205)
T KOG0606|consen  195 MSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTP  263 (1205)
T ss_pred             hhccchhhhcchHHHHHHhhhccccCCccccChhhhhhhccCCCccHHHHHHHHHHHheeeeeccCCCH
Confidence            2111             1112456799999999999998999999999999999999999999997655

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.73  E-value=7.9e-17  Score=139.33  Aligned_cols=138  Identities=14%  Similarity=0.057  Sum_probs=108.4

Q ss_pred             CCccc-cCCCceEEEEEECCeEEEEEEeCcCC------------CchHHHHHHHHHHHHhccCCcce--eeeeeeeecCC
Q 038823           76 RKFIK-QDSTYKLYKGFWQERLISVMKYNESY------------SDSACKFSINNIVYAAQMDHKHI--LKLIGCCLETP  140 (338)
Q Consensus        76 ~~~lg-~G~~g~Vy~~~~~~~~vaik~~~~~~------------~~~~~~~~~~e~~~l~~l~h~ni--v~l~~~~~~~~  140 (338)
                      ...|| .||.|+||.+...+..+++|.+....            .......+.+|+.++.++.|++|  +..+++.....
T Consensus        36 ~~~lg~~~g~gtv~~v~~~~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~~  115 (239)
T PRK01723         36 ARVVGSAKGRGTTWFVQTPGVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVRH  115 (239)
T ss_pred             CceeecCCCCccEEEEEeCCceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeeec
Confidence            45687 89999999999988899999885321            11233567899999999998875  67777654322


Q ss_pred             ----cceEEEeecCC-CCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceE
Q 038823          141 ----IPILVFEYGEY-TTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAK  215 (338)
Q Consensus       141 ----~~~lv~e~~~~-gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~k  215 (338)
                          ..++|||+++| .+|.+++...      .++..    .+.+++.+|.+||   ..+|+|+||||.|||++.++.++
T Consensus       116 ~~~~~~~lV~e~l~G~~~L~~~l~~~------~l~~~----~~~~i~~~l~~lH---~~GI~HrDlkp~NILv~~~~~v~  182 (239)
T PRK01723        116 GLFYRADILIERIEGARDLVALLQEA------PLSEE----QWQAIGQLIARFH---DAGVYHADLNAHNILLDPDGKFW  182 (239)
T ss_pred             CcceeeeEEEEecCCCCCHHHHHhcC------CCCHH----HHHHHHHHHHHHH---HCCCCCCCCCchhEEEcCCCCEE
Confidence                23599999997 6898887543      35544    3578999999999   99999999999999999999999


Q ss_pred             EecCCCCcccC
Q 038823          216 LFDFSESISIP  226 (338)
Q Consensus       216 l~Dfg~a~~~~  226 (338)
                      |+|||.+....
T Consensus       183 LIDfg~~~~~~  193 (239)
T PRK01723        183 LIDFDRGELRT  193 (239)
T ss_pred             EEECCCcccCC
Confidence            99999887643

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.72  E-value=4.9e-17  Score=135.69  Aligned_cols=137  Identities=15%  Similarity=0.154  Sum_probs=98.6

Q ss_pred             CCccccCCCceEEEEEE-CCeEEEEEEeCcCCCc-hHHHH----------------------HHHHHHHHhccCCc--ce
Q 038823           76 RKFIKQDSTYKLYKGFW-QERLISVMKYNESYSD-SACKF----------------------SINNIVYAAQMDHK--HI  129 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~-~~~~~----------------------~~~e~~~l~~l~h~--ni  129 (338)
                      .+.||+|+||.||+|.. +++.||+|.+...... .....                      ...|...+.++.+.  .+
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~   81 (187)
T cd05119           2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV   81 (187)
T ss_pred             CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence            46799999999999998 6999999998754211 11111                      13455666665433  24


Q ss_pred             eeeeeeeecCCcceEEEeecCCCCHHHh-hhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CCeeecCCCCCcee
Q 038823          130 LKLIGCCLETPIPILVFEYGEYTTLRDR-IFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFP-RPIVFGNLISLCIL  207 (338)
Q Consensus       130 v~l~~~~~~~~~~~lv~e~~~~gsL~~~-l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~-~~iiH~dik~~Nil  207 (338)
                      .+.+++    ...++||||++++++... +....      .. .....++.+++.++.++|   . .+|+|+||||+||+
T Consensus        82 ~~~~~~----~~~~lv~e~~~g~~~~~~~l~~~~------~~-~~~~~~~~~~~~~l~~lh---~~~~ivH~Dl~p~Nil  147 (187)
T cd05119          82 PKPIDL----NRHVLVMEFIGGDGIPAPRLKDVR------LL-EDPEELYDQILELMRKLY---REAGLVHGDLSEYNIL  147 (187)
T ss_pred             CceEec----CCCEEEEEEeCCCCccChhhhhhh------hc-ccHHHHHHHHHHHHHHHh---hccCcCcCCCChhhEE
Confidence            445543    246899999998554321 11110      11 567889999999999999   7 99999999999999


Q ss_pred             eCCCCceEEecCCCCcccCC
Q 038823          208 FNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       208 l~~~~~~kl~Dfg~a~~~~~  227 (338)
                      ++ ++.++|+|||.+.....
T Consensus       148 i~-~~~~~liDfg~a~~~~~  166 (187)
T cd05119         148 VD-DGKVYIIDVPQAVEIDH  166 (187)
T ss_pred             EE-CCcEEEEECcccccccC
Confidence            99 89999999999865543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=1.4e-17  Score=151.86  Aligned_cols=124  Identities=27%  Similarity=0.375  Sum_probs=107.3

Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                      .+|+.|++|...+|.++|.+....  ...++...+.++.|++.|+.|      ++.+|+|+||.||+...+..+||+|||
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr~~~--e~~s~s~~~~~~~q~~~~~~y------k~~ihrdlkp~nif~~~d~q~kIgDFg  401 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRRRTG--EERSLSLMLDIFKQIAPAVEY------KGLIHRDLKPSNIFFSDDDQLKIGDFG  401 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCCCcc--cccchhHHHHHHHhhccchhh------ccchhhhccccccccccchhhhhhhhh
Confidence            478999999999999999755432  257888999999999999998      688999999999999999999999999


Q ss_pred             CCcccCCCC----ceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh
Q 038823          221 ESISIPEGE----THIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT  272 (338)
Q Consensus       221 ~a~~~~~~~----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t  272 (338)
                      +........    ........+||..||+||.+.+..|+.|+||||||++|+|+++
T Consensus       402 l~ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~  457 (516)
T KOG1033|consen  402 LVTSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLI  457 (516)
T ss_pred             heeecccCCcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHH
Confidence            987766554    1112256679999999999999999999999999999999998

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.66  E-value=1.8e-17  Score=160.07  Aligned_cols=209  Identities=17%  Similarity=0.187  Sum_probs=168.6

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE---CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccC-CcceeeeeeeeecCCcce
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW---QERLISVMKYNESY-SDSACKFSINNIVYAAQMD-HKHILKLIGCCLETPIPI  143 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~---~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~  143 (338)
                      ....|.+.+.||+|+|+.|-....   ....++.|.+.... ..........|..+-+.+. |+|++++++...+.+..+
T Consensus        18 ~~~~~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~~~~   97 (601)
T KOG0590|consen   18 PNSQYKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPRSYL   97 (601)
T ss_pred             ccccccccccccccccchhhhhhhcCCCcceeeccCCCCCCCccchhhhcCccccccccccccccccccCCccCCCcccc
Confidence            345677888899999999988877   33456666665442 2333345556777777776 999999999999999999


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC-ceEEecCCCC
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN-VAKLFDFSES  222 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~-~~kl~Dfg~a  222 (338)
                      ++++|..++++.+.+.....   ...+......++.|+..++.|+|.  ..++.|+||||+|.+++..+ ..+++|||+|
T Consensus        98 ~~~~~s~g~~~f~~i~~~~~---~~~~~~~~~~~~~ql~s~l~~~H~--~~~~~h~~ikP~n~~l~~s~~~l~~~df~~A  172 (601)
T KOG0590|consen   98 LSLSYSDGGSLFSKISHPDS---TGTSSSSASRYLPQLNSGLSYLHP--ENGVTHRDIKPSNSLLDESGSALKIADFGLA  172 (601)
T ss_pred             cccCcccccccccccccCCc---cCCCCcchhhhhhhhccCccccCc--ccccccCCCCCccchhccCCCcccCCCchhh
Confidence            99999999999998842221   145666778899999999999995  57899999999999999999 9999999999


Q ss_pred             cccCC-CCceeeeecccc-cCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          223 ISIPE-GETHIITRSRFG-AWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       223 ~~~~~-~~~~~~~~~~~g-t~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ..... ...........| ++.|+|||...+. -..+..|+||.|+++.-+++|..||.....
T Consensus       173 t~~~~~~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~  235 (601)
T KOG0590|consen  173 TAYRNKNGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSR  235 (601)
T ss_pred             ccccccCCcceeeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCcccccc
Confidence            88876 444444466778 9999999998874 467889999999999999999999986554

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.56  E-value=1.7e-14  Score=135.34  Aligned_cols=142  Identities=13%  Similarity=0.052  Sum_probs=99.5

Q ss_pred             CCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchH---------------------------------------HHHHH
Q 038823           76 RKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSA---------------------------------------CKFSI  115 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~---------------------------------------~~~~~  115 (338)
                      .+.||.|++|.||+|+. +|+.||||+........-                                       .-+|.
T Consensus       122 ~~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~  201 (437)
T TIGR01982       122 EKPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLR  201 (437)
T ss_pred             CcceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHH
Confidence            36799999999999999 899999999876531110                                       00244


Q ss_pred             HHHHHHhccC----Ccceeeeeeee-ecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHH-HHHHhh
Q 038823          116 NNIVYAAQMD----HKHILKLIGCC-LETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAH-ALAYLH  189 (338)
Q Consensus       116 ~e~~~l~~l~----h~niv~l~~~~-~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~-~l~~LH  189 (338)
                      +|+..+.++.    |.+-+.+-..+ ...+..+|||||++|++|.++......    ..   ...+++..++. .+..+|
T Consensus       202 ~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~~----~~---~~~~ia~~~~~~~l~ql~  274 (437)
T TIGR01982       202 REAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEA----GL---DRKALAENLARSFLNQVL  274 (437)
T ss_pred             HHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHhc----CC---CHHHHHHHHHHHHHHHHH
Confidence            5555555542    22222222222 223457999999999999887643221    22   23456666666 467889


Q ss_pred             cCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          190 VGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       190 ~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                         ..+++|+|++|.||+++.++.++++|||++...+.
T Consensus       275 ---~~g~~H~D~hPgNilv~~~g~i~liDfG~~~~l~~  309 (437)
T TIGR01982       275 ---RDGFFHADLHPGNIFVLKDGKIIALDFGIVGRLSE  309 (437)
T ss_pred             ---hCCceeCCCCcccEEECCCCcEEEEeCCCeeECCH
Confidence               89999999999999999999999999999877654

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.51  E-value=3e-14  Score=123.16  Aligned_cols=214  Identities=18%  Similarity=0.191  Sum_probs=150.1

Q ss_pred             HHhccCCcceeeeeeeeecC-----CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC
Q 038823          120 YAAQMDHKHILKLIGCCLET-----PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPR  194 (338)
Q Consensus       120 ~l~~l~h~niv~l~~~~~~~-----~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~  194 (338)
                      -|-++-|.|||++..|+.+.     .+..++.|||..|+|..+|++..... ..+......+|+-||++||.|||.+ ..
T Consensus       120 nllqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~-~a~~~~~wkkw~tqIlsal~yLhs~-~P  197 (458)
T KOG1266|consen  120 NLLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQ-KALFQKAWKKWCTQILSALSYLHSC-DP  197 (458)
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhh-hhhhHHHHHHHHHHHHhhhhhhhcc-CC
Confidence            45556799999999998653     35789999999999999998754322 2577888889999999999999965 78


Q ss_pred             CeeecCCCCCceeeCCCCceEEecCCCCcccCCCCc--eeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh
Q 038823          195 PIVFGNLISLCILFNEENVAKLFDFSESISIPEGET--HIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT  272 (338)
Q Consensus       195 ~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t  272 (338)
                      +|+|+++...-|++..+|-+|++--......+.-..  ........+-++|.|||+-.....+..+|||+||...+||..
T Consensus       198 piihgnlTc~tifiq~ngLIkig~~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgmcAlemai  277 (458)
T KOG1266|consen  198 PIIHGNLTCDTIFIQHNGLIKIGSVAPDSTHPSVNSTREAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGMCALEMAI  277 (458)
T ss_pred             ccccCCcchhheeecCCceEEecccCccccchhhhhhhHhhhhccccCCccccCCcCcccccccchhhhhhhHHHHHHHH
Confidence            999999999999999999999864332222111111  011133446789999999877778889999999999999999


Q ss_pred             CCCC-cCCccCCcccccHHHHHHHHHhcCccccccccccccCcCCcccHHHH---------HHHHHHHHHccCC
Q 038823          273 GQST-RDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQF---------QACARLTLECLNE  336 (338)
Q Consensus       273 G~~p-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~---------~~~~~l~~~C~~~  336 (338)
                      |..- -........+..+ .-+--...++.-++.+-+++.++|+.|++...+         -.+..++.-|+-.
T Consensus       278 lEiq~tnseS~~~~ee~i-a~~i~~len~lqr~~i~kcl~~eP~~rp~ar~llfHpllfeVhslkll~ahclv~  350 (458)
T KOG1266|consen  278 LEIQSTNSESKVEVEENI-ANVIIGLENGLQRGSITKCLEGEPNGRPDARLLLFHPLLFEVHSLKLLMAHCLVL  350 (458)
T ss_pred             heeccCCCcceeehhhhh-hhheeeccCccccCcCcccccCCCCCCcchhhhhcCceeeecchHHHHhhHheec
Confidence            8753 2222111111111 122223345667788888999988887775422         2344566666644

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.48  E-value=3e-13  Score=110.81  Aligned_cols=127  Identities=18%  Similarity=0.043  Sum_probs=95.9

Q ss_pred             CccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcce-eeeeeeeecCCcceEEEeecCCCCHH
Q 038823           77 KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHI-LKLIGCCLETPIPILVFEYGEYTTLR  155 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~~~gsL~  155 (338)
                      +.|+.|.++.||++...+..+++|........  ...+.+|+..++.+.+.++ ++++.+..  ...++||||++|.++.
T Consensus         4 ~~l~~G~~~~vy~~~~~~~~~~lK~~~~~~~~--~~~~~~E~~~l~~l~~~~~~P~~~~~~~--~~~~lv~e~i~G~~l~   79 (170)
T cd05151           4 SPLKGGMTNKNYRVEVANKKYVVRIPGNGTEL--LINRENEAENSKLAAEAGIGPKLYYFDP--ETGVLITEFIEGSELL   79 (170)
T ss_pred             eecCCcccCceEEEEECCeEEEEEeCCCCccc--ccCHHHHHHHHHHHHHhCCCCceEEEeC--CCCeEEEEecCCCccc
Confidence            56889999999999998889999998655321  1345788999998875554 44555432  3458999999998876


Q ss_pred             HhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC-----eeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          156 DRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRP-----IVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       156 ~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~-----iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      +.    .     ..    ...++.+++.+|+.||   ..+     ++|+|++|.||+++ ++.++++||+.+..
T Consensus        80 ~~----~-----~~----~~~~~~~l~~~l~~LH---~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~  136 (170)
T cd05151          80 TE----D-----FS----DPENLEKIAKLLKKLH---SSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGM  136 (170)
T ss_pred             cc----c-----cc----CHHHHHHHHHHHHHHh---CCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccC
Confidence            43    0     01    1235678999999999   555     59999999999998 67899999998754

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.46  E-value=8.6e-13  Score=124.15  Aligned_cols=165  Identities=19%  Similarity=0.174  Sum_probs=125.4

Q ss_pred             CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHH
Q 038823           93 QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLK  172 (338)
Q Consensus        93 ~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~  172 (338)
                      ++.+|.+..++.... .......+.+..|+.++||||+++++.....+..|+|+|.+.  .|..++..        +...
T Consensus        36 ~~~~vsVF~~~~~~~-~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV~--Pl~~~lk~--------l~~~  104 (690)
T KOG1243|consen   36 DGGPVSVFVYKRSNG-EVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERVR--PLETVLKE--------LGKE  104 (690)
T ss_pred             cCCceEEEEEeCCCc-hhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeeccc--cHHHHHHH--------hHHH
Confidence            778888888876533 445667888999999999999999999999999999999986  67777754        3345


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccC
Q 038823          173 HRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGG  252 (338)
Q Consensus       173 ~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  252 (338)
                      ...-.+.||+.||.|||+  ..+++|++|.-..|+++..|.+||++|-.+........  .......-..|..|+.+...
T Consensus       105 ~v~~Gl~qIl~AL~FL~~--d~~lvHgNv~~~SVfVn~~GeWkLggle~v~~~~~~~~--~~~~~~~~~s~~~P~~~~~s  180 (690)
T KOG1243|consen  105 EVCLGLFQILAALSFLND--DCNLVHGNVCKDSVFVNESGEWKLGGLELVSKASGFNA--PAKSLYLIESFDDPEEIDPS  180 (690)
T ss_pred             HHHHHHHHHHHHHHHHhc--cCCeeeccEeeeeEEEcCCCcEEEeeeEEEeccccCCc--ccccchhhhcccChhhcCcc
Confidence            666778999999999986  78999999999999999999999999977654332211  00111122235556544322


Q ss_pred             CCCccchHHHHHHHHHHHHhCC
Q 038823          253 VFNEKLDVYTFSTVLLELLTGQ  274 (338)
Q Consensus       253 ~~~~~~Dv~s~Gv~l~el~tG~  274 (338)
                      .  -..|.|-||++++|++.|.
T Consensus       181 ~--~s~D~~~Lg~li~el~ng~  200 (690)
T KOG1243|consen  181 E--WSIDSWGLGCLIEELFNGS  200 (690)
T ss_pred             c--cchhhhhHHHHHHHHhCcc
Confidence            2  3469999999999999993

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.43  E-value=2.7e-12  Score=106.56  Aligned_cols=139  Identities=10%  Similarity=0.087  Sum_probs=101.6

Q ss_pred             CCccccCCCceEEEEEEC--------CeEEEEEEeCcCCC---------------------chHHH----HHHHHHHHHh
Q 038823           76 RKFIKQDSTYKLYKGFWQ--------ERLISVMKYNESYS---------------------DSACK----FSINNIVYAA  122 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~~--------~~~vaik~~~~~~~---------------------~~~~~----~~~~e~~~l~  122 (338)
                      ...||.|--+.||.|...        +..+|+|++.....                     ....+    ...+|+..|+
T Consensus         2 ~g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~   81 (197)
T cd05146           2 NGCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLK   81 (197)
T ss_pred             CCccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHH
Confidence            357899999999999873        36899998843210                     01112    2348999999


Q ss_pred             ccC--CcceeeeeeeeecCCcceEEEeecCCCCHHH-hhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHh-hcCCCCCeee
Q 038823          123 QMD--HKHILKLIGCCLETPIPILVFEYGEYTTLRD-RIFGAPQPHFEPLLLKHRLKVAMGIAHALAYL-HVGFPRPIVF  198 (338)
Q Consensus       123 ~l~--h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~-~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~L-H~~~~~~iiH  198 (338)
                      ++.  .-++++.+++    ..-++||||+.+..+.. .+.+.      .++......+..+++.+|..| |   ..+++|
T Consensus        82 rl~~~Gv~vP~pi~~----~~~~lvME~Ig~~~~~~~~Lkd~------~~~~~~~~~i~~~i~~~l~~l~H---~~glVH  148 (197)
T cd05146          82 RMQKAGIPCPEVVVL----KKHVLVMSFIGDDQVPAPKLKDA------KLNDEEMKNAYYQVLSMMKQLYK---ECNLVH  148 (197)
T ss_pred             HHHHcCCCCCeEEEe----cCCEEEEEEcCCCCccchhhhcc------ccCHHHHHHHHHHHHHHHHHHHH---hCCeec
Confidence            986  3567777765    45689999998654422 22221      355566778889999999998 8   889999


Q ss_pred             cCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          199 GNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       199 ~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      +||++.||+++ ++.+.|+|||.+.....+
T Consensus       149 GDLs~~NIL~~-~~~v~iIDF~qav~~~hp  177 (197)
T cd05146         149 ADLSEYNMLWH-DGKVWFIDVSQSVEPTHP  177 (197)
T ss_pred             CCCCHHHEEEE-CCcEEEEECCCceeCCCC
Confidence            99999999996 478999999988766543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.43  E-value=5.9e-13  Score=126.56  Aligned_cols=143  Identities=13%  Similarity=0.047  Sum_probs=90.3

Q ss_pred             CCCcCCccccCCCceEEEEEE-C-CeEEEEEEeCcCCCch---------------------------------HHHH---
Q 038823           72 NYDERKFIKQDSTYKLYKGFW-Q-ERLISVMKYNESYSDS---------------------------------ACKF---  113 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~-~-~~~vaik~~~~~~~~~---------------------------------~~~~---  113 (338)
                      +|+. +.||+|++|.||+|+. + |+.||||+..+.....                                 ..+.   
T Consensus       121 ~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~~  199 (537)
T PRK04750        121 DFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLHD  199 (537)
T ss_pred             hcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHH
Confidence            4666 7899999999999999 5 8999999997552110                                 0111   


Q ss_pred             ---HHHHHHHHhccC----Ccceeeeeeeeec-CCcceEEEeecCCCCHHHhh--hcCCCCCCCCCCHHHHHHHHHHHHH
Q 038823          114 ---SINNIVYAAQMD----HKHILKLIGCCLE-TPIPILVFEYGEYTTLRDRI--FGAPQPHFEPLLLKHRLKVAMGIAH  183 (338)
Q Consensus       114 ---~~~e~~~l~~l~----h~niv~l~~~~~~-~~~~~lv~e~~~~gsL~~~l--~~~~~~~~~~l~~~~~~~i~~~i~~  183 (338)
                         +.+|+..+.++.    +.+.+.+-..+.+ ....+|||||++|+.+.++-  ...      ..+...   ++...+.
T Consensus       200 ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~------g~d~~~---la~~~v~  270 (537)
T PRK04750        200 ELDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAA------GTDMKL---LAERGVE  270 (537)
T ss_pred             hhCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhc------CCCHHH---HHHHHHH
Confidence               233443333332    2222222222211 33567999999999998742  222      122221   2222222


Q ss_pred             H-HHHhhcCCCCCeeecCCCCCceeeCCCC----ceEEecCCCCcccCC
Q 038823          184 A-LAYLHVGFPRPIVFGNLISLCILFNEEN----VAKLFDFSESISIPE  227 (338)
Q Consensus       184 ~-l~~LH~~~~~~iiH~dik~~Nill~~~~----~~kl~Dfg~a~~~~~  227 (338)
                      . +..+.   ..|++|+|++|.||+++.++    .+++.|||++...+.
T Consensus       271 ~~~~Qif---~~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~~  316 (537)
T PRK04750        271 VFFTQVF---RDGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLNK  316 (537)
T ss_pred             HHHHHHH---hCCeeeCCCChHHeEEecCCCCCCeEEEEecceEEECCH
Confidence            1 23334   57999999999999999888    999999999877754

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.38  E-value=6.3e-13  Score=123.73  Aligned_cols=198  Identities=18%  Similarity=0.196  Sum_probs=157.0

Q ss_pred             CCCcCCcccc--CCCceEEEEEE----CCeEEEEEEeCcCCC-chHHHHHHHHHHHHhccC-CcceeeeeeeeecCCcce
Q 038823           72 NYDERKFIKQ--DSTYKLYKGFW----QERLISVMKYNESYS-DSACKFSINNIVYAAQMD-HKHILKLIGCCLETPIPI  143 (338)
Q Consensus        72 ~~~~~~~lg~--G~~g~Vy~~~~----~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~  143 (338)
                      .|.....+|.  |.+|.||.+..    ++..+|+|+-+...+ ......-++|+....+++ |+|.++.+..+..++..+
T Consensus       115 ~~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~~~~lf  194 (524)
T KOG0601|consen  115 RFPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEGSGILF  194 (524)
T ss_pred             hcccccccccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccCccccccccCcccccCCcce
Confidence            3666788999  99999999987    567888888543322 222234456777777775 999999899999999999


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHH----HHHHhhcCCCCCeeecCCCCCceeeCCC-CceEEec
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAH----ALAYLHVGFPRPIVFGNLISLCILFNEE-NVAKLFD  218 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~----~l~~LH~~~~~~iiH~dik~~Nill~~~-~~~kl~D  218 (338)
                      +-+|++. .+|.++......    .++....+....+...    ||.++|   ..+++|-|+||.||++..+ ...+++|
T Consensus       195 iqtE~~~-~sl~~~~~~~~~----~~p~~~l~~~~~~~~~~~~~al~~~h---s~~~~~~~~kp~~i~~~~~~~s~~~~d  266 (524)
T KOG0601|consen  195 IQTELCG-ESLQSYCHTPCN----FLPDNLLWNSLRDWLSRDVTALSHLH---SNNIVHDDLKPANIFTTSDWTSCKLTD  266 (524)
T ss_pred             eeecccc-chhHHhhhcccc----cCCchhhhhHHhhhhhcccccccccC---CCcccccccchhheecccccceeecCC
Confidence            9999998 788777765543    4777788888888888    999999   9999999999999999999 8899999


Q ss_pred             CCCCcccCCCCcee---eeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcC
Q 038823          219 FSESISIPEGETHI---ITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRD  278 (338)
Q Consensus       219 fg~a~~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~  278 (338)
                      ||+...+.......   ......|...|++||... +.++.+.|+||+|.+..+-.+|..+..
T Consensus       267 f~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~-~l~~~~~di~sl~ev~l~~~l~~~~~~  328 (524)
T KOG0601|consen  267 FGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLN-GLATFASDIFSLGEVILEAILGSHLPS  328 (524)
T ss_pred             cceeEEccCCccccceeeeecCCCCceEeChhhhc-cccchHhhhcchhhhhHhhHhhccccc
Confidence            99988877654221   112336788899999864 568999999999999999998866543

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.34  E-value=1.7e-11  Score=98.38  Aligned_cols=145  Identities=18%  Similarity=0.162  Sum_probs=110.4

Q ss_pred             cCCccccCCCceEEEEEECCeEEEEEEeC-cCCCch------HHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           75 ERKFIKQDSTYKLYKGFWQERLISVMKYN-ESYSDS------ACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        75 ~~~~lg~G~~g~Vy~~~~~~~~vaik~~~-~~~~~~------~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      ...++.+|+-+.|+++.+.|+...||.-. +.....      ...+..+|+++|.++.--.|.--.-++.+...-.++||
T Consensus        11 ~l~likQGAEArv~~~~~~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i~ME   90 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSFSGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQIYME   90 (229)
T ss_pred             cceeeeccceeeEeeeccCCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeEEEE
Confidence            46789999999999999999988887543 333221      24567889999999875565555555666666789999


Q ss_pred             ecCC-CCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCc---eEEecCCCCc
Q 038823          148 YGEY-TTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENV---AKLFDFSESI  223 (338)
Q Consensus       148 ~~~~-gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~---~kl~Dfg~a~  223 (338)
                      |++| .++.+++.....+   .........++..|-+.+.-||   ..+|+|+||..+||++..++.   +.++|||++.
T Consensus        91 ~~~g~~~vk~~i~~~~~~---~~~d~~~~~~~~~iG~~igklH---~ndiiHGDLTTSNill~~~~~~~~~~lIdfgls~  164 (229)
T KOG3087|consen   91 FIDGASTVKDFILSTMED---ESEDEGLAELARRIGELIGKLH---DNDIIHGDLTTSNILLRSDGNQITPILIDFGLSS  164 (229)
T ss_pred             eccchhHHHHHHHHHccC---cccchhHHHHHHHHHHHHHHhh---hCCeecccccccceEEecCCCcCceEEEeecchh
Confidence            9995 4788888765542   2223333788899999999999   999999999999999976653   5899999986


Q ss_pred             cc
Q 038823          224 SI  225 (338)
Q Consensus       224 ~~  225 (338)
                      ..
T Consensus       165 ~s  166 (229)
T KOG3087|consen  165 VS  166 (229)
T ss_pred             cc
Confidence            54

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.34  E-value=2.2e-11  Score=98.01  Aligned_cols=133  Identities=19%  Similarity=0.171  Sum_probs=102.8

Q ss_pred             CccccCCCceEEEEEECCeEEEEEEeC-cCCCchH------HHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeec
Q 038823           77 KFIKQDSTYKLYKGFWQERLISVMKYN-ESYSDSA------CKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYG  149 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~~~~~vaik~~~-~~~~~~~------~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  149 (338)
                      .++++|+-+.+|.+.+-|..+.+|.-. +......      ..+-.+|+.++.+++--.|.-.+=+..+.+...++|||+
T Consensus         2 ~~i~~GAEa~i~~~~~~g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~me~I   81 (204)
T COG3642           2 DLIKQGAEAIIYLTDFLGLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLIVMEYI   81 (204)
T ss_pred             chhhCCcceeEEeeeccCcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEEEEe
Confidence            468899999999998877666676543 3332222      345678999999987666655555666777788999999


Q ss_pred             CCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          150 EYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       150 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      +|..|.+.+...            ...++..+-.-+.-||   ..+|+|+||.++||++..+. +.++|||++...
T Consensus        82 ~G~~lkd~l~~~------------~~~~~r~vG~~vg~lH---~~givHGDLTtsNiIl~~~~-i~~IDfGLg~~s  141 (204)
T COG3642          82 EGELLKDALEEA------------RPDLLREVGRLVGKLH---KAGIVHGDLTTSNIILSGGR-IYFIDFGLGEFS  141 (204)
T ss_pred             CChhHHHHHHhc------------chHHHHHHHHHHHHHH---hcCeecCCCccceEEEeCCc-EEEEECCccccc
Confidence            998898888553            2456777778888899   99999999999999997654 999999998753

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=99.32  E-value=2.4e-11  Score=103.84  Aligned_cols=143  Identities=18%  Similarity=0.178  Sum_probs=110.9

Q ss_pred             CccccCCCceEEEEEECC-eEEEEEEeCcCCCchHHHHHHHHHHHHhccCC--cceeeeeeeeecCC---cceEEEeecC
Q 038823           77 KFIKQDSTYKLYKGFWQE-RLISVMKYNESYSDSACKFSINNIVYAAQMDH--KHILKLIGCCLETP---IPILVFEYGE  150 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~~~-~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h--~niv~l~~~~~~~~---~~~lv~e~~~  150 (338)
                      +.|+.|..+.||++...+ ..+++|.............+.+|+.+++.+.+  .++++++.+.....   ..++||||++
T Consensus         4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i~   83 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERVD   83 (223)
T ss_pred             eecCCCccceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEeC
Confidence            568999999999999844 88999997654332234567899999999975  34677887776543   5689999999


Q ss_pred             CCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC--------------------------------------
Q 038823          151 YTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGF--------------------------------------  192 (338)
Q Consensus       151 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~--------------------------------------  192 (338)
                      |.++.+.+.. .     .++......++.+++.+|..||+..                                      
T Consensus        84 G~~l~~~~~~-~-----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (223)
T cd05154          84 GRVLRDRLLR-P-----ELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPAM  157 (223)
T ss_pred             CEecCCCCCC-C-----CCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccccHHH
Confidence            9888776532 1     4777888888999999999998431                                      


Q ss_pred             ---------------CCCeeecCCCCCceeeCC--CCceEEecCCCCccc
Q 038823          193 ---------------PRPIVFGNLISLCILFNE--ENVAKLFDFSESISI  225 (338)
Q Consensus       193 ---------------~~~iiH~dik~~Nill~~--~~~~kl~Dfg~a~~~  225 (338)
                                     ...++|+|+.|.||+++.  ++.+.|+||+.+...
T Consensus       158 ~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~g  207 (223)
T cd05154         158 ERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATLG  207 (223)
T ss_pred             HHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEeccccccC
Confidence                           246799999999999998  567899999877643

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.30  E-value=8.7e-13  Score=122.79  Aligned_cols=207  Identities=15%  Similarity=0.130  Sum_probs=158.5

Q ss_pred             CCccccCHHH-HHHhhcCCCcCCccccCCCceEEEEEE---CCeEEEEEEeCcCCC-chHHHHHHHHHHHHhccC-Ccce
Q 038823           56 NPYRIFSAKE-LEIATNNYDERKFIKQDSTYKLYKGFW---QERLISVMKYNESYS-DSACKFSINNIVYAAQMD-HKHI  129 (338)
Q Consensus        56 ~~~~~~~~~~-~~~~~~~~~~~~~lg~G~~g~Vy~~~~---~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l~-h~ni  129 (338)
                      .+..+|...+ ....+.+|.....||.|.|+.|+....   ++..+++|-..+... ......-..|+.+...+. |.++
T Consensus       249 kp~~i~~~~~~~s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~  328 (524)
T KOG0601|consen  249 KPANIFTTSDWTSCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPS  328 (524)
T ss_pred             chhheecccccceeecCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhccccc
Confidence            3445566666 445567899999999999999998776   677888888776543 233334467777777774 9999


Q ss_pred             eeeeeeeecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeC
Q 038823          130 LKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFN  209 (338)
Q Consensus       130 v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~  209 (338)
                      +.++..+..-...|+--|||.++++...+.-.     ..+++..++++..|++.++.++|   ++.++|+|++|+||++.
T Consensus       329 ~g~~~~W~~~r~~~ip~e~~~~~s~~l~~~~~-----~~~d~~~~~~~~~q~~~~l~~i~---s~~~~~~d~~psni~i~  400 (524)
T KOG0601|consen  329 VGKNSSWSQLRQGYIPLEFCEGGSSSLRSVTS-----QMLDEDPRLRLTAQILTALNVIH---SKLFVHLDVKPSNILIS  400 (524)
T ss_pred             CCCCCCccccccccCchhhhcCcchhhhhHHH-----HhcCcchhhhhHHHHHhcccccc---chhhhcccccccceeec
Confidence            99988888777888999999999987665222     25788889999999999999999   99999999999999998


Q ss_pred             CC-CceEEecCCCCcccCCCCceeeeecccccCCcc--cccccccCCCCccchHHHHHHHHHHHHhCCC
Q 038823          210 EE-NVAKLFDFSESISIPEGETHIITRSRFGAWTYS--APEYKRGGVFNEKLDVYTFSTVLLELLTGQS  275 (338)
Q Consensus       210 ~~-~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~--aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~  275 (338)
                      .+ +..+++|||.+....-..     ....+.-++.  +|.......+..+.|+||||..+.+.++|..
T Consensus       401 ~~~~~~~~~~~~~~t~~~~~~-----~~~~~~~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~  464 (524)
T KOG0601|consen  401 NDGFFSKLGDFGCWTRLAFSS-----GVFHHIDRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSP  464 (524)
T ss_pred             cchhhhhccccccccccceec-----ccccccccccccchhhccccccccccccccccccccccccCcc
Confidence            86 788999999886432211     1122233344  4555556678899999999999999999875

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.21  E-value=3.4e-12  Score=125.18  Aligned_cols=207  Identities=14%  Similarity=0.047  Sum_probs=150.9

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcce
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      ...+.|.+.+-+-.|.++.++.+.-  .+...+++......  .....+....+-.++-..++|.++.....+......+
T Consensus       801 sS~d~~~i~~p~qS~sp~ss~p~~pa~sgh~~~~~v~~~ap~i~~~~~~s~r~~s~~~i~p~~P~v~~~~~s~~~rsP~~  880 (1205)
T KOG0606|consen  801 SSPDGFEITKPSQSGSPSSSFPASPAGSGHTRPSKVHGLAPKIRTNDYESIRSKSNILITPRSPAVVRSFPSFPCRSPLP  880 (1205)
T ss_pred             CCCccceecccccCCCCcccccCCccccccccchhhhccchhhccccccccCCccCccccCCCCceecccCCCCCCCCcc
Confidence            3456677777888999999998776  44444444332221  1222233334444444445677776666666677889


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      ||++|..+++|...+...+     +.+..-.......+..++.|||   ...+.|+|++|.|++...++..+++|||...
T Consensus       881 L~~~~~~~~~~~Skl~~~~-----~~saepaRs~i~~~vqs~e~L~---s~~r~h~~~~p~~~l~~~~gh~~l~~~~t~~  952 (1205)
T KOG0606|consen  881 LVGHYLNGGDLPSKLHNSG-----CLSAEPARSPILERVQSLESLH---SSLRKHRDLKPDSLLIAYDGHRPLTDFGTLS  952 (1205)
T ss_pred             hhhHHhccCCchhhhhcCC-----CcccccccchhHHHHhhhhccc---cchhhcccccccchhhcccCCcccCcccccc
Confidence            9999999999999998765     4555555667778899999999   7789999999999999999999999998322


Q ss_pred             ccCC---------------------CC---ce-----eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCC
Q 038823          224 SIPE---------------------GE---TH-----IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ  274 (338)
Q Consensus       224 ~~~~---------------------~~---~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~  274 (338)
                      ..+.                     ..   ..     .......||+.|.+||...+......+|+|++|++++|.++|.
T Consensus       953 ~vg~~~p~~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~ 1032 (1205)
T KOG0606|consen  953 KVGLIPPTTDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGI 1032 (1205)
T ss_pred             ccccccCcCCcccccccCccccccccccccccccchhhccccccCCCcccCCcccccccCCCcchhhhhhhhhhhhhcCC
Confidence            1110                     00   00     1123456899999999999999999999999999999999999


Q ss_pred             CCcCCccC
Q 038823          275 STRDLLRT  282 (338)
Q Consensus       275 ~p~~~~~~  282 (338)
                      +||....+
T Consensus      1033 pp~na~tp 1040 (1205)
T KOG0606|consen 1033 PPFNAETP 1040 (1205)
T ss_pred             CCCCCcch
Confidence            99987655

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=99.19  E-value=4.4e-10  Score=98.46  Aligned_cols=142  Identities=8%  Similarity=-0.038  Sum_probs=102.8

Q ss_pred             CccccCCCceEEEEEECCeEEEEEEeCcCCCchHHH----------HHHHHHHHHhccCCcc--eeeeeeeeec-----C
Q 038823           77 KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACK----------FSINNIVYAAQMDHKH--ILKLIGCCLE-----T  139 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~----------~~~~e~~~l~~l~h~n--iv~l~~~~~~-----~  139 (338)
                      ..+-......|++..++|+.+.+|...........+          .+.+|...+.++...+  .++.+++...     .
T Consensus        28 e~v~~~~~rrvvr~~~~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~~  107 (268)
T PRK15123         28 EVFRELEGRRTLRFELAGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGVDTMTGVAFGERGSNPAT  107 (268)
T ss_pred             cEEecCCCceEEEEEECCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCcc
Confidence            334444445577887889999999875432111111          3778999998885433  3444555543     2


Q ss_pred             CcceEEEeecCCC-CHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC-------C
Q 038823          140 PIPILVFEYGEYT-TLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE-------E  211 (338)
Q Consensus       140 ~~~~lv~e~~~~g-sL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~-------~  211 (338)
                      ...++|||++++. +|.+++.....   .+.+......++.+++..+.-||   ..||+|+|+++.|||++.       +
T Consensus       108 ~~s~LVte~l~~~~sL~~~~~~~~~---~~~~~~~~~~ll~~la~~i~~LH---~~Gi~HgDL~~~NiLl~~~~~~~~~~  181 (268)
T PRK15123        108 RTSFIITEDLAPTISLEDYCADWAT---NPPDPRLKRMLIKRVATMVRDMH---AAGINHRDCYICHFLLHLPFPGREED  181 (268)
T ss_pred             ceeEEEEeeCCCCccHHHHHHhhcc---cCCCHHHHHHHHHHHHHHHHHHH---HCcCccCCCChhhEEEeccccCCCCC
Confidence            3468999999976 89998854221   14566778899999999999999   999999999999999975       4


Q ss_pred             CceEEecCCCCcc
Q 038823          212 NVAKLFDFSESIS  224 (338)
Q Consensus       212 ~~~kl~Dfg~a~~  224 (338)
                      +.+.++||+.+..
T Consensus       182 ~~~~LIDl~r~~~  194 (268)
T PRK15123        182 LKLSVIDLHRAQI  194 (268)
T ss_pred             ceEEEEECCcccc
Confidence            6799999998754

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.14  E-value=4.7e-10  Score=92.83  Aligned_cols=127  Identities=16%  Similarity=0.170  Sum_probs=84.6

Q ss_pred             eEEEEEE-CCeEEEEEEeCcCCC-------------------------chHHHHHHHHHHHHhccCCc--ceeeeeeeee
Q 038823           86 KLYKGFW-QERLISVMKYNESYS-------------------------DSACKFSINNIVYAAQMDHK--HILKLIGCCL  137 (338)
Q Consensus        86 ~Vy~~~~-~~~~vaik~~~~~~~-------------------------~~~~~~~~~e~~~l~~l~h~--niv~l~~~~~  137 (338)
                      .||.|.. ++..+|+|.......                         ........+|++.|.++...  ++++.+++. 
T Consensus         1 ~Vy~~~~~~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~p~~~~-   79 (188)
T PF01163_consen    1 DVYHAIDPDGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPKPYDYN-   79 (188)
T ss_dssp             EEEEEEECTTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--EEEEE-
T ss_pred             CEEEEECCCCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCcEEEEe-
Confidence            3899998 888999999853210                         01134567899999999755  567777553 


Q ss_pred             cCCcceEEEeecC--CCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHH-hhcCCCCCeeecCCCCCceeeCCCCce
Q 038823          138 ETPIPILVFEYGE--YTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAY-LHVGFPRPIVFGNLISLCILFNEENVA  214 (338)
Q Consensus       138 ~~~~~~lv~e~~~--~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~-LH~~~~~~iiH~dik~~Nill~~~~~~  214 (338)
                         .-.+||||++  |..+..+....       ++......++.+++..+.. +|   ..+|+|+|+.+.||+++++ .+
T Consensus        80 ---~~~ivME~I~~~G~~~~~l~~~~-------~~~~~~~~~~~~il~~~~~~~~---~~givHGDLs~~NIlv~~~-~~  145 (188)
T PF01163_consen   80 ---RNVIVMEYIGEDGVPLPRLKDVD-------LSPEEPKELLEEILEEIIKMLH---KAGIVHGDLSEYNILVDDG-KV  145 (188)
T ss_dssp             ---TTEEEEE--EETTEEGGCHHHCG-------GGGSTHHHHHHHHHHHHHHHHH---CTTEEESS-STTSEEEETT-CE
T ss_pred             ---CCEEEEEecCCCccchhhHHhcc-------ccchhHHHHHHHHHHHHHHHHH---hcCceecCCChhhEEeecc-eE
Confidence               3479999999  65665443221       2234456677788885555 58   8999999999999999887 99


Q ss_pred             EEecCCCCcccCC
Q 038823          215 KLFDFSESISIPE  227 (338)
Q Consensus       215 kl~Dfg~a~~~~~  227 (338)
                      .|+|||.+.....
T Consensus       146 ~iIDf~qav~~~~  158 (188)
T PF01163_consen  146 YIIDFGQAVDSSH  158 (188)
T ss_dssp             EE--GTTEEETTS
T ss_pred             EEEecCcceecCC
Confidence            9999998866543

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.97  E-value=5.5e-09  Score=89.31  Aligned_cols=138  Identities=17%  Similarity=0.111  Sum_probs=99.1

Q ss_pred             CCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCC---------------------chHHHHHHHHHHHHhccCCc--c
Q 038823           73 YDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYS---------------------DSACKFSINNIVYAAQMDHK--H  128 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~---------------------~~~~~~~~~e~~~l~~l~h~--n  128 (338)
                      ..+.+.||-|--+.||.|.. +|.++++|.-..+..                     ........+|...|.+|...  .
T Consensus        93 e~iG~~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~~  172 (304)
T COG0478          93 EAIGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVK  172 (304)
T ss_pred             HhhccccccCccceEEEEECCCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCCC
Confidence            45678999999999999999 799999987632210                     11234467899999999755  7


Q ss_pred             eeeeeeeeecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceee
Q 038823          129 ILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILF  208 (338)
Q Consensus       129 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill  208 (338)
                      +++.+++    +.-.+|||+++|..|...-          ++....-.++..|+.-+.-+-   ..|+||+|+++-||++
T Consensus       173 VP~P~~~----nRHaVvMe~ieG~eL~~~r----------~~~en~~~il~~il~~~~~~~---~~GiVHGDlSefNIlV  235 (304)
T COG0478         173 VPKPIAW----NRHAVVMEYIEGVELYRLR----------LDVENPDEILDKILEEVRKAY---RRGIVHGDLSEFNILV  235 (304)
T ss_pred             CCCcccc----ccceeeeehcccceeeccc----------CcccCHHHHHHHHHHHHHHHH---HcCccccCCchheEEE
Confidence            7777765    3456999999986665432          222333344444555444444   5799999999999999


Q ss_pred             CCCCceEEecCCCCcccCC
Q 038823          209 NEENVAKLFDFSESISIPE  227 (338)
Q Consensus       209 ~~~~~~kl~Dfg~a~~~~~  227 (338)
                      ++||.+.++||--+.....
T Consensus       236 ~~dg~~~vIDwPQ~v~~~h  254 (304)
T COG0478         236 TEDGDIVVIDWPQAVPISH  254 (304)
T ss_pred             ecCCCEEEEeCcccccCCC
Confidence            9999999999976655433

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.95  E-value=1.1e-08  Score=94.24  Aligned_cols=170  Identities=16%  Similarity=0.124  Sum_probs=125.8

Q ss_pred             CCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeee----cCCcceEEEeecCC-CCHH
Q 038823           83 STYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCL----ETPIPILVFEYGEY-TTLR  155 (338)
Q Consensus        83 ~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~----~~~~~~lv~e~~~~-gsL~  155 (338)
                      ...+.|++..  +|..+++|++... ..........-++.++++.|.|+|++..++.    .+..+++||+|.++ ++|.
T Consensus       288 ~~~Ttyk~~s~~DG~~YvLkRlhg~-r~~~~nk~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~  366 (655)
T KOG3741|consen  288 FSITTYKATSNVDGNAYVLKRLHGD-RDQSTNKDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLY  366 (655)
T ss_pred             ccceeEeeeeccCCceeeeeeeccc-cccCcccchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCchHH
Confidence            3457899988  8999999999422 2211122345578899999999999998876    34568999999885 6777


Q ss_pred             HhhhcCCCC----------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          156 DRIFGAPQP----------HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       156 ~~l~~~~~~----------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      ++.......          .....++..+|.++.|+..||.++|   +.|..-+-+.|.+|+++.+..++|+..|.....
T Consensus       367 d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIH---ssGLAck~L~~~kIlv~G~~RIriS~C~i~Dvl  443 (655)
T KOG3741|consen  367 DLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIH---SSGLACKTLDLKKILVTGKMRIRISGCGIMDVL  443 (655)
T ss_pred             HHHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHH---hcCceeecccHhHeEeeCcceEEEecccceeee
Confidence            765433211          1235788999999999999999999   889999999999999999999999887766555


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCC
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQS  275 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~  275 (338)
                      ..+..                +-+.   --.+-|.=.||.+++.|.||..
T Consensus       444 ~~d~~----------------~~le---~~Qq~D~~~lG~ll~aLAt~~~  474 (655)
T KOG3741|consen  444 QEDPT----------------EPLE---SQQQNDLRDLGLLLLALATGTE  474 (655)
T ss_pred             cCCCC----------------cchh---HHhhhhHHHHHHHHHHHhhccc
Confidence            43321                0011   1234688899999999999953

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.90  E-value=1.1e-08  Score=86.71  Aligned_cols=108  Identities=18%  Similarity=0.096  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHhccCC--cceeeeeeeeecCC----cceEEEeecCCC-CHHHhhhcCCCCCCCCCCHHHHHHHHHHHHH
Q 038823          111 CKFSINNIVYAAQMDH--KHILKLIGCCLETP----IPILVFEYGEYT-TLRDRIFGAPQPHFEPLLLKHRLKVAMGIAH  183 (338)
Q Consensus       111 ~~~~~~e~~~l~~l~h--~niv~l~~~~~~~~----~~~lv~e~~~~g-sL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~  183 (338)
                      ...+.+|...+..|..  -..++.+++.....    ..++|+|++++. +|.+++....     .++......++.+++.
T Consensus        55 ~~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~-----~~~~~~~~~ll~~l~~  129 (206)
T PF06293_consen   55 RSRAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWE-----QLDPSQRRELLRALAR  129 (206)
T ss_pred             chHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhc-----ccchhhHHHHHHHHHH
Confidence            3467788888888753  33556666665432    358999999974 7999887643     2566678889999999


Q ss_pred             HHHHhhcCCCCCeeecCCCCCceeeCCCC---ceEEecCCCCcccC
Q 038823          184 ALAYLHVGFPRPIVFGNLISLCILFNEEN---VAKLFDFSESISIP  226 (338)
Q Consensus       184 ~l~~LH~~~~~~iiH~dik~~Nill~~~~---~~kl~Dfg~a~~~~  226 (338)
                      .+.-||   ..+|+|+|+++.|||++.++   .+.++||+.++...
T Consensus       130 ~i~~lH---~~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~~~  172 (206)
T PF06293_consen  130 LIAKLH---DAGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRFRP  172 (206)
T ss_pred             HHHHHH---HCcCCCCCCCcccEEEeCCCCceeEEEEcchhceeCC
Confidence            999999   99999999999999999887   89999999776543

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>PRK09902 hypothetical protein; Provisional

Probab=98.89  E-value=4.9e-08  Score=81.50  Aligned_cols=140  Identities=12%  Similarity=0.036  Sum_probs=106.2

Q ss_pred             cccCCCceEEEEEECCeEEEEEEeCcCCC-----chHHHHHHHHHHHHhccCC--cceeeeeeeeecC----CcceEEEe
Q 038823           79 IKQDSTYKLYKGFWQERLISVMKYNESYS-----DSACKFSINNIVYAAQMDH--KHILKLIGCCLET----PIPILVFE  147 (338)
Q Consensus        79 lg~G~~g~Vy~~~~~~~~vaik~~~~~~~-----~~~~~~~~~e~~~l~~l~h--~niv~l~~~~~~~----~~~~lv~e  147 (338)
                      -|.||.+-|++-...|..+-+|.-.....     ......|.+|+..|.+|..  -.+++...+....    -..+||+|
T Consensus        26 ~~rgG~SgV~r~~~~g~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pvf~~~~k~~~~~rA~LVTe  105 (216)
T PRK09902         26 YRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTE  105 (216)
T ss_pred             cCCCCcceEEEEEeCCcEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccceeeeeccCCceEEEEEEE
Confidence            47789999999888777888888753321     3345779999999999863  3355555222222    23689999


Q ss_pred             ecCC-CCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCc--eEEecCCCCcc
Q 038823          148 YGEY-TTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENV--AKLFDFSESIS  224 (338)
Q Consensus       148 ~~~~-gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~--~kl~Dfg~a~~  224 (338)
                      -+++ -+|.+++.+...   .+.+...+..++.+++..++-||   ..++.|+|+.+.||+++.++.  ++++||.-++.
T Consensus       106 ~L~g~~~L~~~l~~~~~---~~~~~~~k~~il~~va~~ia~LH---~~Gv~Hgdly~khIll~~~g~~~v~lIDlEk~r~  179 (216)
T PRK09902        106 DMAGFISIADWYAQHAV---SPYSDEVRQAMLKAVALAFKKMH---SVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRR  179 (216)
T ss_pred             eCCCCccHHHHHhcCCc---CCcchHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHhheeecCCCCeeEEEEEhhccch
Confidence            7664 588888865432   25677888899999999999999   999999999999999986667  99999976654

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.80  E-value=1.4e-07  Score=85.05  Aligned_cols=198  Identities=15%  Similarity=0.120  Sum_probs=128.5

Q ss_pred             CcCCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeee------eecCC-cceEE
Q 038823           74 DERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGC------CLETP-IPILV  145 (338)
Q Consensus        74 ~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~------~~~~~-~~~lv  145 (338)
                      ....-||+|+.+.+|..---+. .+.|++....-...    ...+..|... .||-+-.-+.+      .-+.+ ...+.
T Consensus        14 ~~gr~LgqGgea~ly~l~e~~d-~VAKIYh~Pppa~~----aqk~a~la~~p~~p~~~~rvaWPqa~L~G~~~~~~iGfl   88 (637)
T COG4248          14 PPGRPLGQGGEADLYTLGEVRD-QVAKIYHAPPPAAQ----AQKVAELAATPDAPLLNYRVAWPQATLHGGRRGKVIGFL   88 (637)
T ss_pred             CCCccccCCccceeeecchhhc-hhheeecCCCchHH----HHHHHHhccCCCCcchhhhhcccHHHhhCCCccceeEEe
Confidence            4567899999999997543222 23466554321111    1223334433 35543221111      11222 25677


Q ss_pred             EeecCCCC-HHHhhhc-CCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          146 FEYGEYTT-LRDRIFG-APQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       146 ~e~~~~gs-L~~~l~~-~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      |+.+.+.- +.+++.. +.+.+....+|...++.++.++.+.+-||   ..|.+-+|+.++|+|+++++.+.|.|=..-.
T Consensus        89 mP~v~g~~pI~~~y~p~tRRqs~P~~~w~fllrvaRnlA~aFA~lH---~~Gh~vGDVn~~~~lVsd~~~V~LVdsDsfq  165 (637)
T COG4248          89 MPKVSGKEPIHMIYSPATRRQSYPHCAWDFLLRVARNLASAFATLH---EHGHVVGDVNQNSFLVSDDSKVVLVDSDSFQ  165 (637)
T ss_pred             cccCCCccchhhhcCchhhcccCCccccHHHHHHHHHHHHHHHHHH---hcCCcccccCccceeeecCceEEEEccccee
Confidence            88776532 2223221 22234456899999999999999999999   8899999999999999999999998753222


Q ss_pred             ccCCCCceeeeecccccCCcccccccc-----cCCCCccchHHHHHHHHHHHHhC-CCCcCCccC
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYKR-----GGVFNEKLDVYTFSTVLLELLTG-QSTRDLLRT  282 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~Gv~l~el~tG-~~p~~~~~~  282 (338)
                      ....+..+   ...+|...|.+||.-.     +-..+...|-|.||+++++++.| +.||.....
T Consensus       166 i~~ng~~~---~cpVg~~eftPPElQ~~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~~  227 (637)
T COG4248         166 INANGTLH---LCPVGVSEFTPPELQTLPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYSGIPL  227 (637)
T ss_pred             eccCCceE---ecccCccccCCHHHhccccccccCCCccccchhHHHHHHHHHhcCCCCCCcccc
Confidence            21122112   5567899999999754     23356789999999999999996 999986554

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=98.71  E-value=2.8e-07  Score=79.12  Aligned_cols=139  Identities=8%  Similarity=-0.007  Sum_probs=85.2

Q ss_pred             CccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcc--eeeeeeeeecCCcceEEEeecCCCC-
Q 038823           77 KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKH--ILKLIGCCLETPIPILVFEYGEYTT-  153 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~l~~~~~~~~~~~lv~e~~~~gs-  153 (338)
                      ..||+|..+.||+.  .+..+++|........   ....+|.++++.+..-+  +.+.++++...+...+|||+++|.+ 
T Consensus         7 ~~i~~G~t~~~y~~--~~~~~VlR~~~~~~~~---~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~~~glv~e~i~G~~~   81 (226)
T TIGR02172         7 TQTGEGGNGESYTH--KTGKWMLKLYNPGFDK---ETIKREFDASRKVFSLGIPTPHPFDLVEDGGRLGLIYELIVGKRS   81 (226)
T ss_pred             eeecCCCCcceeEe--cCCCEEEEeCCCCCCH---HHHHHHHHHHHHHHHcCCCCCceEEEEecCCeeeeeeeecCCccc
Confidence            56899999999984  2456778887654322   34678999999886443  4677888877777889999999863 


Q ss_pred             HHHhh---------------------hcCCCCCCCCCCHHHHH-HHHH----------HHHH-HHHHhhc-CCCCCeeec
Q 038823          154 LRDRI---------------------FGAPQPHFEPLLLKHRL-KVAM----------GIAH-ALAYLHV-GFPRPIVFG  199 (338)
Q Consensus       154 L~~~l---------------------~~~~~~~~~~l~~~~~~-~i~~----------~i~~-~l~~LH~-~~~~~iiH~  199 (338)
                      +...+                     +.....   ..+..... .+..          .+.. ...+|.. .....++|+
T Consensus        82 ~~~~~~~~~~~~~~l~~~la~~l~~lH~~~~~---~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~Hg  158 (226)
T TIGR02172        82 FSRIISDNPSRLEEIAKIFAEMAKKLHSTKCD---TSTFQSYKEKIRKFIEEKDFVPKDYKEKARAFIKEVPDTSTCLHG  158 (226)
T ss_pred             hhhhhcCCHHHHHHHHHHHHHHHHHHhCCCCC---CCcHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCCCCceEec
Confidence            22111                     110000   11111100 0000          0001 1112211 123467899


Q ss_pred             CCCCCceeeCCCCceEEecCCCCcc
Q 038823          200 NLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       200 dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      |+.|.||++++++ +.++||+.+..
T Consensus       159 D~~~~Nii~~~~~-~~iIDwe~a~~  182 (226)
T TIGR02172       159 DFQIGNLITSGKG-TYWIDLGDFGY  182 (226)
T ss_pred             CCCCCcEEEcCCC-cEEEechhcCc
Confidence            9999999999888 99999987754

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.67  E-value=1.3e-07  Score=89.74  Aligned_cols=141  Identities=11%  Similarity=0.005  Sum_probs=92.1

Q ss_pred             CccccCCCceEEEEEE-CCeEEEEEEeCcCCCchH---------------------------------------HHHHHH
Q 038823           77 KFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSA---------------------------------------CKFSIN  116 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~---------------------------------------~~~~~~  116 (338)
                      .-|+.++-|.||+|++ +|+.||||+..++....-                                       .-++.+
T Consensus       131 ~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~~  210 (517)
T COG0661         131 EPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYRR  210 (517)
T ss_pred             CchhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHhCHHH
Confidence            6799999999999999 799999999865432110                                       001234


Q ss_pred             HHHHHhccC-----Ccc--eeeeeeeeecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 038823          117 NIVYAAQMD-----HKH--ILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLH  189 (338)
Q Consensus       117 e~~~l~~l~-----h~n--iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH  189 (338)
                      |..-+.+++     .++  |++++  ..-.+...|+|||++|..+.+...-...    .++...+.....++.-  ..+-
T Consensus       211 EA~n~~~~~~nf~~~~~v~VP~V~--we~t~~~VLtmE~i~Gi~i~d~~~l~~~----g~d~k~ia~~~~~~f~--~q~~  282 (517)
T COG0661         211 EAANAERFRENFKDDPDVYVPKVY--WEYTTRRVLTMEWIDGIKISDIAALKSA----GIDRKELAELLVRAFL--RQLL  282 (517)
T ss_pred             HHHHHHHHHHHcCCCCCeEeceee--hhccCCcEEEEEeeCCEecccHHHHHhc----CCCHHHHHHHHHHHHH--HHHH
Confidence            444444442     222  22222  1223456899999999999887433222    3554333333222222  2222


Q ss_pred             cCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          190 VGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       190 ~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                         ..+++|.|..|.||+++.+|.+-+.|||+....++.
T Consensus       283 ---~dgffHaDpHpGNi~v~~~g~i~~lDfGi~g~l~~~  318 (517)
T COG0661         283 ---RDGFFHADPHPGNILVRSDGRIVLLDFGIVGRLDPK  318 (517)
T ss_pred             ---hcCccccCCCccceEEecCCcEEEEcCcceecCCHH
Confidence               459999999999999999999999999998777653

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=98.59  E-value=9.3e-07  Score=74.21  Aligned_cols=138  Identities=16%  Similarity=0.066  Sum_probs=93.8

Q ss_pred             hhcCCCcCCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHH---------HHHHHHHhccCC---cceeeeeeee
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFS---------INNIVYAAQMDH---KHILKLIGCC  136 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~---------~~e~~~l~~l~h---~niv~l~~~~  136 (338)
                      ..++|...+.+-......|.+-..+++.+.+|.........+ +.|         .+++..+.++..   ..+..++.+.
T Consensus        29 ~~~~~~~~kv~k~~~r~~ValIei~~~kyIlK~pr~~~~r~e-r~~~sf~kg~~~~~l~~~~~~i~~~g~~~~~~~yl~~  107 (229)
T PF06176_consen   29 LDNNYKIIKVFKNTKRNYVALIEIDGKKYILKEPREENRRPE-RRFKSFFKGSEYSRLINNTDKIRNEGFTEPADPYLAA  107 (229)
T ss_pred             HhCCceEEEeecCCCccEEEEEEECCcEEEEeccchhhhhHH-HHHHHHhccHHHHHHHHHHHHHHHcCccccccceeee
Confidence            356788878888877777888877999999999876543221 222         233333344432   2233333332


Q ss_pred             ec-----CCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC
Q 038823          137 LE-----TPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE  211 (338)
Q Consensus       137 ~~-----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~  211 (338)
                      ..     ....+++|||++|..|.+..         .++.    .++..+..++.-||   ..|++|+|..|.|++++++
T Consensus       108 ekk~~~~~~~~~ll~EYIeG~~l~d~~---------~i~e----~~~~ki~~~ikqlH---~~G~~HGD~hpgNFlv~~~  171 (229)
T PF06176_consen  108 EKKIFRYTSSYVLLMEYIEGVELNDIE---------DIDE----DLAEKIVEAIKQLH---KHGFYHGDPHPGNFLVSNN  171 (229)
T ss_pred             eeeeccceeEEEEEEEEecCeecccch---------hcCH----HHHHHHHHHHHHHH---HcCCccCCCCcCcEEEECC
Confidence            21     23457899999998887654         2333    24566788899999   9999999999999999855


Q ss_pred             CceEEecCCCCcc
Q 038823          212 NVAKLFDFSESIS  224 (338)
Q Consensus       212 ~~~kl~Dfg~a~~  224 (338)
                       .++++||+..+.
T Consensus       172 -~i~iID~~~k~~  183 (229)
T PF06176_consen  172 -GIRIIDTQGKRM  183 (229)
T ss_pred             -cEEEEECccccc
Confidence             599999986654

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=98.59  E-value=1.4e-08  Score=95.74  Aligned_cols=182  Identities=14%  Similarity=0.043  Sum_probs=133.0

Q ss_pred             CCccccCCCceEEEEEECC-eEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcc-eeeeeeeeecCCcceEEEeecCCC-
Q 038823           76 RKFIKQDSTYKLYKGFWQE-RLISVMKYNESYSDSACKFSINNIVYAAQMDHKH-ILKLIGCCLETPIPILVFEYGEYT-  152 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~~~-~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~n-iv~l~~~~~~~~~~~lv~e~~~~g-  152 (338)
                      ..-+++|+++.+||.+... .....+.+...      ....-++++|.+++||| .+..++.+...+..+++++++.++ 
T Consensus       247 fh~fvK~altknpKkRptaeklL~h~fvs~~------l~~rl~~eLLdK~n~P~~~v~~~~d~~~E~~~~i~~~i~s~~r  320 (829)
T KOG0576|consen  247 FHNFVKGALTKNPKKRPTAEKLLQHPFVSQT------LSRRLAIELLDKVNNPNPVVRYLEDYDGEDYLWIPMRICSTGR  320 (829)
T ss_pred             HHHHHHHHhcCCCccCCChhhheeceeeccc------hhhHHHHHHHHHccCCCCcccccccCCcccccchhhhhhcCCc
Confidence            3446899999999988732 22223333322      33456788999999999 777777777788899999999877 


Q ss_pred             CHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCcee
Q 038823          153 TLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHI  232 (338)
Q Consensus       153 sL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~  232 (338)
                      +-........    ..+...+...+...-++++++||   +..-+|+|    ||+..+ +..|.+||+.........+  
T Consensus       321 s~~~~~~~se----~~~~~~~~~~~~r~et~~l~~l~---~~~~~~~d----~~l~s~-~~~~~~~~~v~~~L~~~~~--  386 (829)
T KOG0576|consen  321 SSALEMTVSE----IALEQYQFAYPLRKETRPLAELH---SSYKVHRD----NILGSE-EEVKLLDFAVPPQLTRTMK--  386 (829)
T ss_pred             cccccCChhh----Hhhhhhhhhhhhhhhcccccccc---cccccCcc----cccccc-cccccccccCCcccCcccc--
Confidence            3322221111    13445556667778888999999   66568888    777654 7899999998877665542  


Q ss_pred             eeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcC
Q 038823          233 ITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRD  278 (338)
Q Consensus       233 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~  278 (338)
                       .+...+++.++|||+...+.+..+.|+||+|+-..+|.-|-+|-.
T Consensus       387 -~~t~~~~~~~~~pev~~~~~~~~~p~~~~~~~~~~~~ap~~pPr~  431 (829)
T KOG0576|consen  387 -PRTAIGTPEPLAPEVIQENTIDGCPDSGSLAVSAIQMAPGLPPRS  431 (829)
T ss_pred             -cccCCCCCCCCCchhhcccccccCCCccCCCcchhhcCCCCCCCC
Confidence             256678999999999999999999999999987778877776643

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=98.57  E-value=9.7e-07  Score=74.94  Aligned_cols=154  Identities=17%  Similarity=0.171  Sum_probs=101.1

Q ss_pred             CHHHHHHhhcCCCcCCc---cccCCCceEEEEEE-CCeEEEEEEeCcCCCch-----------------------HHHHH
Q 038823           62 SAKELEIATNNYDERKF---IKQDSTYKLYKGFW-QERLISVMKYNESYSDS-----------------------ACKFS  114 (338)
Q Consensus        62 ~~~~~~~~~~~~~~~~~---lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~-----------------------~~~~~  114 (338)
                      +.+.+....+...+..+   |++|.-+.||+|.. ++..+|+|++.......                       ...+.
T Consensus        36 t~~~l~~L~~rg~i~~~~g~istGKEA~Vy~a~~~~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~~W~  115 (268)
T COG1718          36 TLETLRRLLSRGVITELVGCISTGKEANVYLAETGDGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVFAWA  115 (268)
T ss_pred             HHHHHHHHhcCCceeeeEeeecCCcceEEEeeccCCCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHHHHH
Confidence            44555666566655555   45566668999987 78899999996432111                       01223


Q ss_pred             HHHHHHHhccC--CcceeeeeeeeecCCcceEEEeecCCCCH-HHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 038823          115 INNIVYAAQMD--HKHILKLIGCCLETPIPILVFEYGEYTTL-RDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVG  191 (338)
Q Consensus       115 ~~e~~~l~~l~--h~niv~l~~~~~~~~~~~lv~e~~~~gsL-~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~  191 (338)
                      ..|+.-|.++.  +-.+++-+++.    .-.|||||+..... .-.|..      .++.......+..+++..+.-|-. 
T Consensus       116 ~kEf~NL~R~~eAGVrvP~Pi~~~----~nVLvMEfIg~~g~pAP~LkD------v~~e~~e~~~~~~~~v~~~~~l~~-  184 (268)
T COG1718         116 RKEFRNLKRAYEAGVRVPEPIAFR----NNVLVMEFIGDDGLPAPRLKD------VPLELEEAEGLYEDVVEYMRRLYK-  184 (268)
T ss_pred             HHHHHHHHHHHHcCCCCCCceeec----CCeEEEEeccCCCCCCCCccc------CCcCchhHHHHHHHHHHHHHHHHH-
Confidence            45666666664  33445555443    23699999874311 111211      133444677778888888887762 


Q ss_pred             CCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          192 FPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       192 ~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                       ..++||+||+.-|||+. ++.+.|+|||-|....++
T Consensus       185 -~a~LVHgDLSEyNiL~~-~~~p~iID~~QaV~~~hp  219 (268)
T COG1718         185 -EAGLVHGDLSEYNILVH-DGEPYIIDVSQAVTIDHP  219 (268)
T ss_pred             -hcCcccccchhhheEEE-CCeEEEEECccccccCCC
Confidence             38999999999999999 889999999988776544

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.56  E-value=9.4e-09  Score=97.72  Aligned_cols=99  Identities=23%  Similarity=0.297  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCce-------eeeecccccCCcccccccc
Q 038823          178 AMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH-------IITRSRFGAWTYSAPEYKR  250 (338)
Q Consensus       178 ~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~-------~~~~~~~gt~~y~aPE~~~  250 (338)
                      +.+++.|+.|+|.  +.++||++|.|++|.++.++.+||+.|+.+.....+...       ...........|.|||++.
T Consensus       105 l~~v~dgl~flh~--sAk~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~~  182 (700)
T KOG2137|consen  105 LGNVADGLAFLHR--SAKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYLL  182 (700)
T ss_pred             hhcccchhhhhcc--CcceeecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhhc
Confidence            3455699999997  789999999999999999999999999987655442111       0111223456899999999


Q ss_pred             cCCCCccchHHHHHHHHHHHH-hCCCCcC
Q 038823          251 GGVFNEKLDVYTFSTVLLELL-TGQSTRD  278 (338)
Q Consensus       251 ~~~~~~~~Dv~s~Gv~l~el~-tG~~p~~  278 (338)
                      +...+.++|+||+|+++|-+. .|+.-+.
T Consensus       183 ~~~~~~~sd~fSlG~li~~i~~~gk~i~~  211 (700)
T KOG2137|consen  183 GTTNTPASDVFSLGVLIYTIYNGGKSIIA  211 (700)
T ss_pred             cccccccccceeeeeEEEEEecCCcchhh
Confidence            988999999999999999998 4554444

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=98.49  E-value=5.8e-07  Score=74.69  Aligned_cols=105  Identities=20%  Similarity=0.214  Sum_probs=83.4

Q ss_pred             HHHHHHHhccCC-cceeeeeeeeecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC
Q 038823          115 INNIVYAAQMDH-KHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFP  193 (338)
Q Consensus       115 ~~e~~~l~~l~h-~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~  193 (338)
                      .+|.-+++.+++ +++++++|+|-.    ++|.||...+++...-.  .-......+|..+.+||.++++.+.+|++...
T Consensus         7 ~~E~lll~~l~~~~~~pk~lG~CG~----~~v~E~~~~~~~~~~~~--~l~~~~~~~w~~R~~iA~~lL~~l~~l~~~~~   80 (188)
T PF12260_consen    7 NNEPLLLQLLQGSEPFPKLLGSCGR----FYVVEYVGAGSLYGIYR--PLSQFLQSPWEQRAKIALQLLELLEELDHGPL   80 (188)
T ss_pred             ccHHHHHHHcCCCCCCCCeeeECCC----EEEEEeecCcccccccc--ccccccccCHHHHHHHHHHHHHHHHHHhcCCC
Confidence            357888888875 699999999943    57999999776653200  00011257899999999999999999997766


Q ss_pred             CCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          194 RPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       194 ~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      ..+.-+|++|+|+-+++++.+|++|.......
T Consensus        81 ~~~~lcDv~~~nfgv~~~~~lk~iDld~v~~~  112 (188)
T PF12260_consen   81 GFFYLCDVSPDNFGVNDDGRLKLIDLDDVFVE  112 (188)
T ss_pred             CcEEEeecchHHeEEeCCCcEEEEechhcchh
Confidence            77888999999999999999999999866544

Proteins in this uncharacterised family are described as transmembrane proteins.

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=98.44  E-value=4e-06  Score=72.84  Aligned_cols=141  Identities=9%  Similarity=-0.037  Sum_probs=85.9

Q ss_pred             cccCCC-ceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-CcceeeeeeeeecCCcceEEEeecCCCCHHH
Q 038823           79 IKQDST-YKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCLETPIPILVFEYGEYTTLRD  156 (338)
Q Consensus        79 lg~G~~-g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~  156 (338)
                      |..|.+ ..||+....+..+.+|......    .....+|+.+++.+. +--+++++++....+..++|||+++|.+|..
T Consensus         6 ~~~g~~~~~v~~~~~~~~~~~vk~~~~~~----~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~~   81 (244)
T cd05150           6 VTEGQSGATVYRLDGKNPGLYLKIAPSGP----TYELEREAERLRWLAGKLPVPEVIDYGSDDGRAWLLTSAVPGVPAAA   81 (244)
T ss_pred             cCCCCCcCeEEEEcCCCCcEEEEecCCCc----ccchHHHHHHHHHHHhcCCCCeEEEEEecCCccEEEEEeeCCccHhH
Confidence            444555 7899998766778888876542    234667888888874 4446677887776667899999999877764


Q ss_pred             hhh-------------------cCCCCCCCCCCH--HHHHHHHH--------------------HHHHHHHHhh----cC
Q 038823          157 RIF-------------------GAPQPHFEPLLL--KHRLKVAM--------------------GIAHALAYLH----VG  191 (338)
Q Consensus       157 ~l~-------------------~~~~~~~~~l~~--~~~~~i~~--------------------~i~~~l~~LH----~~  191 (338)
                      ...                   ...... .++..  ........                    .+...+..|-    ..
T Consensus        82 ~~~~~~~~~~~~~l~~~l~~lH~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  160 (244)
T cd05150          82 LWEELEPERLVDALAEALRRLHALPVAD-CPFDRRLDRRLAEARARVENGLVDEDDFDDERRGWSAEELYAELEATRPAE  160 (244)
T ss_pred             hhcccCHHHHHHHHHHHHHHHhcCCccc-CCcchhHHHHHHHHHHHHhcCCcChhhCcHhhcCCCHHHHHHHHHhhCCCc
Confidence            321                   111000 01110  00000000                    0111122221    01


Q ss_pred             CCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          192 FPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       192 ~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ....++|+|+.|.||+++++..+.|+||+.+..
T Consensus       161 ~~~~l~HgD~~~~Nil~~~~~~~~iIDwe~a~~  193 (244)
T cd05150         161 EDLVVTHGDACLPNIIVDPGKFSGFIDLGRLGV  193 (244)
T ss_pred             CceEEECCCCCCccEEEeCCcEEEEEEcccccc
Confidence            245699999999999999987789999987653

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=98.41  E-value=2.9e-06  Score=72.80  Aligned_cols=144  Identities=15%  Similarity=0.191  Sum_probs=84.3

Q ss_pred             CccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCc--ceeeeeeeeec---CCcceEEEeecCC
Q 038823           77 KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHK--HILKLIGCCLE---TPIPILVFEYGEY  151 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~--niv~l~~~~~~---~~~~~lv~e~~~~  151 (338)
                      +.|+.|..+.||+...+++.+++|.....   .....+.+|..+++.+...  .+.+++.++..   ....+++|++++|
T Consensus         3 ~~l~~G~~n~~~~v~~~~~~~vlK~~~~~---~~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~~~~~~~~~~~~~i~g   79 (239)
T PF01636_consen    3 RPLSGGFSNRVYRVTTDDGRYVLKFYRPP---DAAERLRREAAVLRQLAEHGIPVPRVLAFDTSDEFNGFPYLLMEYIPG   79 (239)
T ss_dssp             EEEEESSSSEEEEEEETTSEEEEEEESSH---HHHHHHHHHHHHHHHHHHTTSBS--EEEEEEETEETSEEEEEEEEESS
T ss_pred             ccCCCCCeeeEEEEEECCcEEEEEEeCCC---CCHHHHHHHHHHHHHHHhcCCCCceEEeecccccccccceEEEEEecc
Confidence            46889999999999996689999997644   3446677888888888633  35677765432   2346899999998


Q ss_pred             CCHHH----------------hhh---cCCCCCCCCCCHHH---------HHHH------------HHHHHH-HHHHhhc
Q 038823          152 TTLRD----------------RIF---GAPQPHFEPLLLKH---------RLKV------------AMGIAH-ALAYLHV  190 (338)
Q Consensus       152 gsL~~----------------~l~---~~~~~~~~~l~~~~---------~~~i------------~~~i~~-~l~~LH~  190 (338)
                      ..+..                .+.   .... ...++....         ....            ...+.. .+..++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (239)
T PF01636_consen   80 RPLDDELSPEQRPELLRQLGRALAQLHQVPP-PFSPFADWPEWRLEFLRQLESWTARLRASELFDDLEELEERLLQELEA  158 (239)
T ss_dssp             EEHHHTSTHHHHHHHHHHHHHHHHHHHHSHT-TCCCHTHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhhhhhcccccc-cccccccccccccccccccccccccccchhhhhhhHHHHHHHHHHHHh
Confidence            88777                111   1100 000111110         0000            011111 2222221


Q ss_pred             ----CCCCCeeecCCCCCceeeC-CCCceEEecCCCCcc
Q 038823          191 ----GFPRPIVFGNLISLCILFN-EENVAKLFDFSESIS  224 (338)
Q Consensus       191 ----~~~~~iiH~dik~~Nill~-~~~~~kl~Dfg~a~~  224 (338)
                          .....++|+|+.|.||+++ +++.+-|+||+.+..
T Consensus       159 ~~~~~~~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~~  197 (239)
T PF01636_consen  159 LLPKPLPPVLIHGDLHPGNILVDPSDGRIGIIDFEDAGW  197 (239)
T ss_dssp             HHHCCSCEEEE-SS-SGGGEEEESSTTEEEE--GTT-EE
T ss_pred             hhccCCCcEEEEeccccccceeeeccceeEEEecccceE
Confidence                1357799999999999999 666678999986643

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=98.37  E-value=2.2e-06  Score=81.30  Aligned_cols=142  Identities=11%  Similarity=-0.020  Sum_probs=93.6

Q ss_pred             CCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHH------------------------------------HHHHHHH
Q 038823           76 RKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSAC------------------------------------KFSINNI  118 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~------------------------------------~~~~~e~  118 (338)
                      .+.||.-+.|.||+|+. +|+.||||+-++...+...                                    -+|.+|+
T Consensus       166 ~~piaaASlaQVhrA~L~~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~EA  245 (538)
T KOG1235|consen  166 EEPIAAASLAQVHRARLKNGEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFTKEA  245 (538)
T ss_pred             cchhhhcchhheEEEEecCCCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchHHHH
Confidence            36799999999999999 8899999998765322110                                    0123343


Q ss_pred             HHHhc----cCCcc------eeeeeeeeecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 038823          119 VYAAQ----MDHKH------ILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYL  188 (338)
Q Consensus       119 ~~l~~----l~h~n------iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~L  188 (338)
                      +-..+    +.|-+      |+++|-.+.  ....|+||||+|..+.|.-.-...    .++...+..-+.++..-+-+-
T Consensus       246 ~Nae~~~~~f~~~~~~~~V~VP~Vy~~~s--t~RVLtME~~~G~~i~Dl~~i~~~----gi~~~~i~~~l~~~~~~qIf~  319 (538)
T KOG1235|consen  246 KNAERFRENFKDFSLLTYVLVPKVYWDLS--TKRVLTMEYVDGIKINDLDAIDKR----GISPHDILNKLVEAYLEQIFK  319 (538)
T ss_pred             HhHHHHHHHHHhcccccceeCCeehhhcC--cceEEEEEecCCccCCCHHHHHHc----CCCHHHHHHHHHHHHHHHHHh
Confidence            33322    23444      444444332  346899999999887665332221    466665554444444444444


Q ss_pred             hcCCCCCeeecCCCCCceeeCC----CCceEEecCCCCcccCCC
Q 038823          189 HVGFPRPIVFGNLISLCILFNE----ENVAKLFDFSESISIPEG  228 (338)
Q Consensus       189 H~~~~~~iiH~dik~~Nill~~----~~~~kl~Dfg~a~~~~~~  228 (338)
                      |     |.+|+|=.|.||+++.    ++.+.+-|||+...+...
T Consensus       320 ~-----GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~is~~  358 (538)
T KOG1235|consen  320 T-----GFFHADPHPGNILVRPNPEGDEEIVLLDHGLYAVISHK  358 (538)
T ss_pred             c-----CCccCCCCCCcEEEecCCCCCccEEEEcccccccccHH
Confidence            4     8999999999999984    578999999998877654

>PLN02876 acyl-CoA dehydrogenase

Probab=98.36  E-value=7e-06  Score=83.65  Aligned_cols=79  Identities=9%  Similarity=0.029  Sum_probs=57.3

Q ss_pred             CCccccCCCceEEEEEECC----eEEEEEEeCcCCCchHHHHHHHHHHHHhccC-Ccce--eeeeeeeecC---CcceEE
Q 038823           76 RKFIKQDSTYKLYKGFWQE----RLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHI--LKLIGCCLET---PIPILV  145 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~~~----~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h~ni--v~l~~~~~~~---~~~~lv  145 (338)
                      ...++.|.++.+|+....+    ..+++|+............+.+|+.+|+.+. |.++  ++++.+|.+.   +..++|
T Consensus        43 v~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~~~~~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~~v~G~~flV  122 (822)
T PLN02876         43 VSQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLLQSAHAVEREYQVLRALGEHTDVPVPKVYCLCTDASVIGTAFYI  122 (822)
T ss_pred             EEEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccCccHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCCcCCCceEE
Confidence            4567899999999988733    4677777654322223356789999999996 6665  7888888764   467999


Q ss_pred             EeecCCCCH
Q 038823          146 FEYGEYTTL  154 (338)
Q Consensus       146 ~e~~~~gsL  154 (338)
                      |||++|..+
T Consensus       123 ME~v~G~~~  131 (822)
T PLN02876        123 MEYLEGRIF  131 (822)
T ss_pred             EEecCCccc
Confidence            999997543

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=98.30  E-value=2.9e-05  Score=64.88  Aligned_cols=137  Identities=19%  Similarity=0.158  Sum_probs=92.9

Q ss_pred             CcCCccccCCCceEEEEEECCeEEEEEEeCcCC---------------CchHHHHHHHHHHHHhccC------Ccceeee
Q 038823           74 DERKFIKQDSTYKLYKGFWQERLISVMKYNESY---------------SDSACKFSINNIVYAAQMD------HKHILKL  132 (338)
Q Consensus        74 ~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~---------------~~~~~~~~~~e~~~l~~l~------h~niv~l  132 (338)
                      +...+||+|+.-.||.-- ++...+||+.....               .........+|+.....+.      +.+|.++
T Consensus         4 ~~~~~i~~G~~R~cy~HP-~dp~~cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~~i~r~   82 (199)
T PF10707_consen    4 SESDLIAQGGERDCYQHP-DDPNLCIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWSHIPRF   82 (199)
T ss_pred             CCCcccccCCCceEEECC-CCCCeEEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCcccccccE
Confidence            345689999999998633 45567888887653               0112345566666555554      8899999


Q ss_pred             eeeeecCCcceEEEeecCC------CCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCce
Q 038823          133 IGCCLETPIPILVFEYGEY------TTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCI  206 (338)
Q Consensus       133 ~~~~~~~~~~~lv~e~~~~------gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Ni  206 (338)
                      +|+..++--+.+|+|.+..      -+|.+++...      .++. ...+.+.+..   .||-   ...|+.+|++|.||
T Consensus        83 ~G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~~------~~~~-~~~~~L~~f~---~~l~---~~~Iv~~dl~~~NI  149 (199)
T PF10707_consen   83 YGFVETNLGLGLVVELIRDADGNISPTLEDYLKEG------GLTE-ELRQALDEFK---RYLL---DHHIVIRDLNPHNI  149 (199)
T ss_pred             eEEEecCCceEEEEEEEECCCCCcCccHHHHHHcC------CccH-HHHHHHHHHH---HHHH---HcCCeecCCCcccE
Confidence            9999998888999998542      4577888544      3555 4444444444   4555   77899999999999


Q ss_pred             eeCCC--C--ceEEec-CCCCcc
Q 038823          207 LFNEE--N--VAKLFD-FSESIS  224 (338)
Q Consensus       207 ll~~~--~--~~kl~D-fg~a~~  224 (338)
                      ++...  +  .+.|+| ||....
T Consensus       150 v~~~~~~~~~~lvlIDG~G~~~~  172 (199)
T PF10707_consen  150 VVQRRDSGEFRLVLIDGLGEKEL  172 (199)
T ss_pred             EEEecCCCceEEEEEeCCCCccc
Confidence            99633  2  477777 454433

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=98.30  E-value=8e-06  Score=65.80  Aligned_cols=130  Identities=14%  Similarity=0.106  Sum_probs=92.0

Q ss_pred             CcCCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcce-eeeeeeeecCCcceEEEeecCCC
Q 038823           74 DERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHI-LKLIGCCLETPIPILVFEYGEYT  152 (338)
Q Consensus        74 ~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~~~g  152 (338)
                      ...+.|++|.+|.||+|.+.|..+|+|+-....   ....+..|+++|..+.-.++ .++|.|..+    ++.|||+.|-
T Consensus        25 ~v~~~L~KG~~s~Vyl~~~~~~~~a~Kvrr~ds---~r~~l~kEakiLeil~g~~~~p~vy~yg~~----~i~me~i~G~   97 (201)
T COG2112          25 RVEKELAKGTTSVVYLGEWRGGEVALKVRRRDS---PRRNLEKEAKILEILAGEGVTPEVYFYGED----FIRMEYIDGR   97 (201)
T ss_pred             hhhhhhhcccccEEEEeeccCceEEEEEecCCc---chhhHHHHHHHHHHhhhcCCCceEEEechh----hhhhhhhcCc
Confidence            445789999999999999999999999976542   23668899999999986665 445555433    3559999988


Q ss_pred             CHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCC-CCceeeCCCCceEEecCCCCccc
Q 038823          153 TLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLI-SLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       153 sL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik-~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      +|.+.-..        .+..+...    ++++-.-|-   ..||-|+.|. |...++-.+..+.|+||..|+..
T Consensus        98 ~L~~~~~~--------~~rk~l~~----vlE~a~~LD---~~GI~H~El~~~~k~vlv~~~~~~iIDFd~At~k  156 (201)
T COG2112          98 PLGKLEIG--------GDRKHLLR----VLEKAYKLD---RLGIEHGELSRPWKNVLVNDRDVYIIDFDSATFK  156 (201)
T ss_pred             chhhhhhc--------ccHHHHHH----HHHHHHHHH---HhccchhhhcCCceeEEecCCcEEEEEccchhhc
Confidence            88776532        12333333    333333344   7788888885 55566666669999999988743

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=98.12  E-value=3.7e-05  Score=63.85  Aligned_cols=126  Identities=19%  Similarity=0.185  Sum_probs=90.7

Q ss_pred             cCCCcCCccccCCC-ceEEEEEECCeEEEEEEeCcC-----------CCc---------hHHHHHHHHHHHHhccC---C
Q 038823           71 NNYDERKFIKQDST-YKLYKGFWQERLISVMKYNES-----------YSD---------SACKFSINNIVYAAQMD---H  126 (338)
Q Consensus        71 ~~~~~~~~lg~G~~-g~Vy~~~~~~~~vaik~~~~~-----------~~~---------~~~~~~~~e~~~l~~l~---h  126 (338)
                      .+++..+.||.|.. |.||++..+|..+|+|.+..-           ...         ....-|..|.+...+|+   +
T Consensus        37 ~~I~flefLg~g~~~~~V~kv~I~g~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~ECRAfgRLke~~~  116 (207)
T PF13095_consen   37 DDIEFLEFLGHGSHDGYVFKVEIDGRIYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCECRAFGRLKEAGR  116 (207)
T ss_pred             CcEeeeeecCCCCceeEEEEEEECCeEEEEEEeeccccCCCccccccccccccccchhhhhcChHHHHHHhhHHHHhccc
Confidence            78888999999999 999999999999999994210           000         11234677877777765   5


Q ss_pred             cce--eeeeeeeecC------------------CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 038823          127 KHI--LKLIGCCLET------------------PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALA  186 (338)
Q Consensus       127 ~ni--v~l~~~~~~~------------------~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~  186 (338)
                      .++  |+.+||..-.                  ...-+|.||.+...              .+.    .+-+.+|.+-|.
T Consensus       117 e~~~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~--------------~~~----~~~~~~~~~dl~  178 (207)
T PF13095_consen  117 EGLWAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDP--------------PLQ----IRDIPQMLRDLK  178 (207)
T ss_pred             cCceEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCcc--------------ccc----hhHHHHHHHHHH
Confidence            566  9999987321                  01356777666322              122    234567888889


Q ss_pred             HhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCC
Q 038823          187 YLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSES  222 (338)
Q Consensus       187 ~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a  222 (338)
                      .+|   ..+|+-+|+++.|..     .-||+|||.+
T Consensus       179 ~~~---k~gI~~~Dv~~~ny~-----~G~lvDfs~~  206 (207)
T PF13095_consen  179 ILH---KLGIVPRDVKPRNYR-----GGKLVDFSSS  206 (207)
T ss_pred             HHH---HCCeeeccCcccccc-----CCEEEecccC
Confidence            999   999999999999987     4589999864

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=98.01  E-value=7.8e-05  Score=64.40  Aligned_cols=73  Identities=12%  Similarity=0.050  Sum_probs=45.4

Q ss_pred             CccccCCCc-eEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCc---ceeeeeeeeecC---CcceEEEeec
Q 038823           77 KFIKQDSTY-KLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHK---HILKLIGCCLET---PIPILVFEYG  149 (338)
Q Consensus        77 ~~lg~G~~g-~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~---niv~l~~~~~~~---~~~~lv~e~~  149 (338)
                      ..++.|+.. .||+.   +..+++|......   ....+.+|..++..+...   -+.++++.....   ...+++|+++
T Consensus         3 ~~~~~gG~~n~vy~~---~~~~VlR~~~~~~---~~~~~~~E~~~l~~L~~~~~v~vP~~~~~~~~~~~~~~~~~l~~~i   76 (235)
T cd05155           3 EPVDSGGTDNATFRL---GDDMSVRLPSAAG---YAGQVRKEQRWLPRLAPHLPLPVPEPLGKGEPGEGYPWPWSVYRWL   76 (235)
T ss_pred             eeccCCCcccceEEc---CCceEEEcCCccc---hHHHHHHHHHHHHHHhccCCCCCCceeecCCCccCCCcceEEEEee
Confidence            456766665 58875   2346667654321   234678899998887532   345555544332   2358899999


Q ss_pred             CCCCHH
Q 038823          150 EYTTLR  155 (338)
Q Consensus       150 ~~gsL~  155 (338)
                      +|.++.
T Consensus        77 ~G~~l~   82 (235)
T cd05155          77 EGETAT   82 (235)
T ss_pred             cCCCCC
Confidence            987764

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>TIGR02721 ycfN_thiK thiamine kinase

Probab=97.99  E-value=6e-05  Score=65.99  Aligned_cols=141  Identities=11%  Similarity=0.002  Sum_probs=80.9

Q ss_pred             ccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcce-eeeeeeeecCCcceEEEeecCCCCHHH
Q 038823           78 FIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHI-LKLIGCCLETPIPILVFEYGEYTTLRD  156 (338)
Q Consensus        78 ~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~~~gsL~~  156 (338)
                      .+..|-.+.+|+...++..+++|.......... ....+|..+++.+....+ +++++.+.    .++||||++|..+..
T Consensus         3 ~~~~G~tn~~y~~~~~~~~~vlR~~~~~~~~~~-~~r~~E~~~l~~l~~~g~~P~~i~~~~----~~~v~e~i~G~~~~~   77 (256)
T TIGR02721         3 TLSGGLTNRSWRIEHPGISFVWRPQSPVCKALG-VDRQREYQILQALSALGLAPKPILVNE----HWLLVEWLEGEVITL   77 (256)
T ss_pred             cCCCcCcCCeEEEEeCCccEEEeeCCccccccc-CcHHHHHHHHHHHHhcCCCCceEEEeC----CEEEEEeccCccccc
Confidence            356688889999888777888887654322211 124678888888864333 44454432    369999999866542


Q ss_pred             h-----------------hhcCCCCCCCCCCHHH-HHHHHHHH---------HHHHHHhhc-----CCCCCeeecCCCCC
Q 038823          157 R-----------------IFGAPQPHFEPLLLKH-RLKVAMGI---------AHALAYLHV-----GFPRPIVFGNLISL  204 (338)
Q Consensus       157 ~-----------------l~~~~~~~~~~l~~~~-~~~i~~~i---------~~~l~~LH~-----~~~~~iiH~dik~~  204 (338)
                      .                 ++..... ..+++... ...+..++         ...+..+-.     .....++|+|+.|.
T Consensus        78 ~~~~~~~~~~~la~~l~~lH~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~H~Dl~~~  156 (256)
T TIGR02721        78 DQFVALDLLLELAALLHQLHSQPRF-GYPLSLKARIAHYWLQIDPARRTPEWLRLYKQFRSAPEPAPLPLAPLHMDVHAY  156 (256)
T ss_pred             ccccCchhHHHHHHHHHHHhCCCCC-CCCCCHHHHHHHHHHhcccccCChHHHHHHHHHHhccCCCCCCCeeecCCCCcC
Confidence            1                 1111110 11222221 11111111         111221111     11346899999999


Q ss_pred             ceeeCCCCceEEecCCCCccc
Q 038823          205 CILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       205 Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      ||++++++ +.|+||..+...
T Consensus       157 Nil~~~~~-~~lIDwE~a~~g  176 (256)
T TIGR02721       157 NLVVTPQG-LKLIDWEYASDG  176 (256)
T ss_pred             cEEEeCCC-CEEEeccccCcC
Confidence            99999877 789999877554

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>PRK10593 hypothetical protein; Provisional

Probab=97.95  E-value=0.00027  Score=63.30  Aligned_cols=76  Identities=8%  Similarity=-0.011  Sum_probs=56.1

Q ss_pred             CCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCC---cceeeeeeeeec---CCcceEEEeec
Q 038823           76 RKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDH---KHILKLIGCCLE---TPIPILVFEYG  149 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h---~niv~l~~~~~~---~~~~~lv~e~~  149 (338)
                      .+.||.|..+.||+....+..+.+|..+.. ..  ...+.+|...|+.|.-   -.+++++++|..   .+..++|||++
T Consensus        19 ~~~i~~G~~~~vy~~~~~~~~~~~k~~~~~-~~--~~~~~~Ea~~L~~L~~~~~vpVP~V~~~~~~~~~~g~~~LVmE~i   95 (297)
T PRK10593         19 VECISEQPYAALWALYDSQGNPMPLMARSF-ST--PGVAQQEAWKLSMLARSGTVRMPTVYGVMTHEQSPGPDVLLLERL   95 (297)
T ss_pred             eeecCCccceeEEEEEcCCCCEEEEEeccc-cc--chHHHHHHHHHHHHccCCCCCcCcEEEEeccCCcCCCeEEEEecc
Confidence            467999999999999875556666775431 11  1467889999988853   368888888754   35689999999


Q ss_pred             CCCCH
Q 038823          150 EYTTL  154 (338)
Q Consensus       150 ~~gsL  154 (338)
                      +++++
T Consensus        96 ~G~~~  100 (297)
T PRK10593         96 RGVSV  100 (297)
T ss_pred             CCEec
Confidence            98754

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=97.90  E-value=0.00017  Score=62.26  Aligned_cols=72  Identities=18%  Similarity=0.057  Sum_probs=47.0

Q ss_pred             CccccCCCceEEEEEEC---CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcc-eeeeeeeeecCCcceEEEeecCCC
Q 038823           77 KFIKQDSTYKLYKGFWQ---ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKH-ILKLIGCCLETPIPILVFEYGEYT  152 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~~---~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~n-iv~l~~~~~~~~~~~lv~e~~~~g  152 (338)
                      +.|..|-...+|+....   +..+++|........ . ....+|+.+++.+...+ .+++++.+. +   .++|||++|.
T Consensus         4 ~~l~gG~tN~~~~v~~~~~~~~~~vlR~~~~~~~~-~-~d~~~E~~~~~~l~~~gl~P~v~~~~~-~---~~l~e~i~G~   77 (235)
T cd05157           4 KRFTGGITNKLVKVSNKEDNQDAVLVRVYGNKTEL-I-IDRERELRIHKLLSKHGLAPKLYATFQ-N---GLIYEFIPGR   77 (235)
T ss_pred             EEcCCcccceEEEEEcCCCCCCeEEEEEccCCccc-e-ecHHHHHHHHHHHHhCCCCCeEEEEeC-C---cEEEEeeCCC
Confidence            45777888899999874   578888877543211 1 22346888888885333 445554432 2   4899999986


Q ss_pred             CH
Q 038823          153 TL  154 (338)
Q Consensus       153 sL  154 (338)
                      ++
T Consensus        78 ~l   79 (235)
T cd05157          78 TL   79 (235)
T ss_pred             cC
Confidence            65

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=97.88  E-value=0.00024  Score=65.76  Aligned_cols=75  Identities=7%  Similarity=-0.118  Sum_probs=53.6

Q ss_pred             CccccCCCceEEEEEE-CC-eEEEEEEeCcCCC------chHHHHHHHHHHHHhccC---CcceeeeeeeeecCCcceEE
Q 038823           77 KFIKQDSTYKLYKGFW-QE-RLISVMKYNESYS------DSACKFSINNIVYAAQMD---HKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~-~~-~~vaik~~~~~~~------~~~~~~~~~e~~~l~~l~---h~niv~l~~~~~~~~~~~lv  145 (338)
                      +.||.|.+..||++.. +| +.++||.-.....      ....++...|.+.|..+.   ..++++++.+..  +..++|
T Consensus        32 ~elggGn~N~VyrV~~~~g~~svIVKqa~p~~r~~g~~wpl~~eR~~~Eae~L~~l~~~~p~~VPkV~~~D~--~~~~lV  109 (401)
T PRK09550         32 REIGDGNLNLVFRVSDTEGGKSVIVKQALPYVRVVGESWPLTLDRARIEAEALKIQAKYVPDLVPKVYHYDE--ELAVTV  109 (401)
T ss_pred             eEcCCCceEEEEEEEeCCCCeEEEEEecCcccccccccccccHHHHHHHHHHHHHHHhhCCCCCCeEEEECC--CCCEEE
Confidence            5689999999999999 44 4899998542211      123466778888888763   346778887743  457899


Q ss_pred             EeecCCCC
Q 038823          146 FEYGEYTT  153 (338)
Q Consensus       146 ~e~~~~gs  153 (338)
                      |||+++..
T Consensus       110 ME~L~~~~  117 (401)
T PRK09550        110 MEDLSDHK  117 (401)
T ss_pred             EecCCCcc
Confidence            99998644

>PRK05231 homoserine kinase; Provisional

Probab=97.87  E-value=0.00049  Score=62.27  Aligned_cols=160  Identities=14%  Similarity=0.105  Sum_probs=84.0

Q ss_pred             CHHHHHHhhcCCCc-----CCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcc--eeeeee
Q 038823           62 SAKELEIATNNYDE-----RKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKH--ILKLIG  134 (338)
Q Consensus        62 ~~~~~~~~~~~~~~-----~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~l~~  134 (338)
                      +.+++...-..|..     .+.++.|....+|+...+++.+++|++. .....   ....|..++..|...+  +.+.+.
T Consensus         8 s~~~l~~~l~~y~~~~~~~~~~l~~G~~n~~y~v~t~~g~~vLK~~~-~~~~~---~l~~~~~~l~~L~~~glpvP~~i~   83 (319)
T PRK05231          8 SDDELAAFLAPYDLGELLSLKGIAEGIENSNFFLTTTQGEYVLTLFE-RLTAE---DLPFFLGLMQHLAARGVPVPAPVA   83 (319)
T ss_pred             CHHHHHHHHHhcCCchhhccchhccccccceEEEEeCCCcEEEEEec-cCChH---HhHHHHHHHHHHHHCCCCCCccee
Confidence            44455444444543     2456677778999988766688999876 22222   2233445555543212  333332


Q ss_pred             e------eecCCcceEEEeecCCCCHHH-----------hhh---cCCC----C--CCCCCCH-HHHHH-----------
Q 038823          135 C------CLETPIPILVFEYGEYTTLRD-----------RIF---GAPQ----P--HFEPLLL-KHRLK-----------  176 (338)
Q Consensus       135 ~------~~~~~~~~lv~e~~~~gsL~~-----------~l~---~~~~----~--~~~~l~~-~~~~~-----------  176 (338)
                      .      ....+..++++||++|..+..           .+.   ....    .  ....+.| .....           
T Consensus        84 ~~~G~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~G~~LA~lH~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (319)
T PRK05231         84 RRDGAALGELAGKPAAIVTFLEGKWPRAPTAAHCAEVGEMLARMHLAGRDFPLERPNLRGLAWWRELAPRLLPFLADEQA  163 (319)
T ss_pred             CCCCCEeeeeCCEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCccCCCCCChHHHHHHHHHHhhccChhHH
Confidence            1      122456789999999764321           110   1000    0  0001111 11111           


Q ss_pred             -HH-HHHHHHHHHhhcC----CCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          177 -VA-MGIAHALAYLHVG----FPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       177 -i~-~~i~~~l~~LH~~----~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                       .. ..+...+..+...    -+.+++|+|+.|.||+++.+...-|+||+.+...
T Consensus       164 ~~l~~~~~~~~~~~~~~~~~~lp~~liHgD~~~~Nil~~~~~~~~iIDf~~~~~~  218 (319)
T PRK05231        164 ALLEAELAAQLAFLASAAWPALPRGVIHADLFRDNVLFEGDRLSGFIDFYFACND  218 (319)
T ss_pred             HHHHHHHHHHHHhhhccccccCCcccCCCCCCCCcEEEECCceEEEEecccccCC
Confidence             11 1111122222211    2568999999999999987666689999987543

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=97.83  E-value=0.00011  Score=74.56  Aligned_cols=155  Identities=19%  Similarity=0.176  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHhccCCcceeeeeeeeecCCc----ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 038823          111 CKFSINNIVYAAQMDHKHILKLIGCCLETPI----PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALA  186 (338)
Q Consensus       111 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~----~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~  186 (338)
                      .....-|...+.++.|+|++.++.|......    ..+..+++..-++.+.+..-+     .++..+...+..+...||.
T Consensus       226 i~~~E~e~~~l~k~~~~n~~~~~~~~le~~~~g~~~~v~~~~~s~~~~~~~~q~v~-----~i~~~~~r~~~~~~~~GL~  300 (1351)
T KOG1035|consen  226 IQTTEIELESLSKIAHDNLGGYFVYGLERLFRGIVLDVLQEICSKVELRSLLQSVG-----SIPLETLRILHQKLLEGLA  300 (1351)
T ss_pred             HHHHHHHHHHHHhhccccccceeEEeehhhcchHHHHHHHhhcCccchHHHHhhcc-----ccCHHHHHHHHHHHhhhHH
Confidence            3344456677888899999999999875432    234567888888888887665     5888999999999999999


Q ss_pred             HhhcCCCCCeeecCCCCC---ceeeCCCCceEEe--cCCCCcccCCCCceeeeecccccCCcccccccccCCCCc--cch
Q 038823          187 YLHVGFPRPIVFGNLISL---CILFNEENVAKLF--DFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNE--KLD  259 (338)
Q Consensus       187 ~LH~~~~~~iiH~dik~~---Nill~~~~~~kl~--Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~--~~D  259 (338)
                      |+|   .....|.-+..+   +.-.+.++...++  ||+.+...+.....   .....+..+.+||......++.  ..|
T Consensus       301 ~~h---~~~l~~v~L~~s~~~~~~~~~e~~~~~sl~~~~ss~~l~d~~~~---~~~~~~~~~~~~e~~~~~~~~~~r~~d  374 (1351)
T KOG1035|consen  301 YLH---SLSLEHVVLSASSSKESTVDGEGVVAISLSDFDSSKPLPDNEKS---FSDLLAEIRNADEDLKENTAKKSRLTD  374 (1351)
T ss_pred             HHH---HhccceeEEecccccccccCccceeecchhhhcccccCCCcccc---hhhcCccccccccccccccchhhhhhH
Confidence            999   554444444333   3444555666666  88887776654432   2333455678888877665554  479


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 038823          260 VYTFSTVLLELLTGQST  276 (338)
Q Consensus       260 v~s~Gv~l~el~tG~~p  276 (338)
                      +|.+|.++..+..|..+
T Consensus       375 L~~lgll~~~~~~~~~i  391 (1351)
T KOG1035|consen  375 LWCLGLLLLQLSQGEDI  391 (1351)
T ss_pred             HHHHHHHHhhhhhcCcc
Confidence            99999999999998764

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=97.79  E-value=0.00038  Score=62.29  Aligned_cols=145  Identities=14%  Similarity=0.126  Sum_probs=86.0

Q ss_pred             CCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcc--eeeeeeee------ecCCcceEEEe
Q 038823           76 RKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKH--ILKLIGCC------LETPIPILVFE  147 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~l~~~~------~~~~~~~lv~e  147 (338)
                      ...+..|....+|+...++..+++|..... .   ......|+.++..+.+.+  +++++...      ...+..+.|++
T Consensus        19 i~~i~~G~~n~~y~v~~~~~~~vLr~~~~~-~---~~~~~~e~~~l~~L~~~g~~vp~~i~~~~g~~~~~~~~~~~~l~~   94 (296)
T cd05153          19 FEGISAGIENTNYFVTTDSGRYVLTLFEKV-S---AEELPFFLALLDHLAERGLPVPRPIADRDGEYLSELAGKPAALVE   94 (296)
T ss_pred             eecccCccccceEEEEeCCCcEEEEEcCCC-C---hHhccHHHHHHHHHHHCCCCCCccccCCCCcEeeeeCCceEEEEE
Confidence            456777888899998877778889987642 2   244566777777775332  44544421      22345689999


Q ss_pred             ecCCCCHHH----h----------hhcC----CCC--CCCCCCHHHHH----------HHHHHHHHHHHHhhc----CCC
Q 038823          148 YGEYTTLRD----R----------IFGA----PQP--HFEPLLLKHRL----------KVAMGIAHALAYLHV----GFP  193 (338)
Q Consensus       148 ~~~~gsL~~----~----------l~~~----~~~--~~~~l~~~~~~----------~i~~~i~~~l~~LH~----~~~  193 (338)
                      |++|..+..    .          ++..    ...  ......|....          .....+..++.++..    ..+
T Consensus        95 ~i~G~~~~~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~  174 (296)
T cd05153          95 FLAGEHLTRPTAAHCRQIGEALARLHLAAQSFPGERNNLRGLAWIRELGKDLLPLLSAEDRALLADELARQDAFDPSDLP  174 (296)
T ss_pred             eCCCCCCCCCCHHHHHHHHHHHHHHHHHhccCCccCCCcCCcHHHHHHHHHhccccCHHHHHHHHHHHHHHHhhhhhcCC
Confidence            999866532    0          0000    000  00011221110          011223334444442    124


Q ss_pred             CCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          194 RPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       194 ~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      .+++|+|+.|.||++++++.+.|.||+.+..
T Consensus       175 ~~l~HgD~~~~Nil~~~~~~~~iIDfe~a~~  205 (296)
T cd05153         175 RGVIHADLFRDNVLFDGDELSGVIDFYFACT  205 (296)
T ss_pred             CcCCccCcCcccEEEeCCceEEEeehhhhcC
Confidence            5799999999999999887789999987654

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=97.67  E-value=0.002  Score=57.99  Aligned_cols=147  Identities=13%  Similarity=0.104  Sum_probs=83.9

Q ss_pred             CCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcc--eeeeeeee------ecCCcceEEEe
Q 038823           76 RKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKH--ILKLIGCC------LETPIPILVFE  147 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~l~~~~------~~~~~~~lv~e  147 (338)
                      .+.++.|....+|+...+++.+++|........   .....|.+++..|....  +++++...      ...+..++++|
T Consensus        27 i~~~~~G~~n~~y~v~t~~~~~vLK~~~~~~~~---~~i~~e~~~l~~L~~~g~pvp~~i~t~~g~~~~~~~g~~~~l~e  103 (307)
T TIGR00938        27 LKGIAEGVENSNYLLTTDVGRYILTLYEKRVKA---EELPFFLALTTHLAARGLPVPKPVKSRDGRQLSTLAGKPACLVE  103 (307)
T ss_pred             ccccCCccccceEEEEeCCCcEEEEEecCCCCH---HHHHHHHHHHHHHHHCCCCCCccccCCCCCeehhcCCeEEEEEE
Confidence            355777777899998776667888887553222   33455667777664222  44444422      12345789999


Q ss_pred             ecCCCCHHH-----------h---hhcCCC----CC---CCCCCHHHHH------------HHHHHHHHHHHHhhc----
Q 038823          148 YGEYTTLRD-----------R---IFGAPQ----PH---FEPLLLKHRL------------KVAMGIAHALAYLHV----  190 (338)
Q Consensus       148 ~~~~gsL~~-----------~---l~~~~~----~~---~~~l~~~~~~------------~i~~~i~~~l~~LH~----  190 (338)
                      |++|..+..           .   ++....    ..   ...-.|....            .....+...+.++..    
T Consensus       104 ~i~G~~~~~~~~~~~~~~G~~LA~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~l~~~~~~~l~~~~~~l~~~~~~  183 (307)
T TIGR00938       104 FLQGLSVGRPTAMHCRPVGEVLAWMHLAGAHFPENRKNSLRLEAWHILAEKCFEAAPQLEAHMGAELDKELDYLDKFWPR  183 (307)
T ss_pred             eCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCCCChHHHHHHHHhhhhcccccCHHHHHHHHHHHHHHHhhhhh
Confidence            999754321           0   111000    00   0001111110            011223344555532    


Q ss_pred             CCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          191 GFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       191 ~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      ..+.+++|+|+.+.||+++.++...|+||+.+...
T Consensus       184 ~~~~~l~HgD~~~~Nvl~~~~~~~~vIDfd~~~~~  218 (307)
T TIGR00938       184 DLPRGVIHADLFPDNVLFDGDSVKGVIDFYFACTD  218 (307)
T ss_pred             cCCCccCCCCCCcCcEEEECCceEEEeecccccCc
Confidence            12578999999999999998887799999977543

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=97.51  E-value=0.0017  Score=58.25  Aligned_cols=140  Identities=14%  Similarity=0.045  Sum_probs=88.5

Q ss_pred             ccccCCCceEEEEEECCeEEEEEEeCc-CCCchHHHHHHHHHHHHhccCC--cceeeeeeeeecCC--cceEEEeecCCC
Q 038823           78 FIKQDSTYKLYKGFWQERLISVMKYNE-SYSDSACKFSINNIVYAAQMDH--KHILKLIGCCLETP--IPILVFEYGEYT  152 (338)
Q Consensus        78 ~lg~G~~g~Vy~~~~~~~~vaik~~~~-~~~~~~~~~~~~e~~~l~~l~h--~niv~l~~~~~~~~--~~~lv~e~~~~g  152 (338)
                      .+..|-.-.+|....+++.+++. ... ...........+|..+++.+.-  --+...+++|.++.  .++.||+|++|.
T Consensus        32 ~~~~G~sn~t~~~~~~~~~~vlR-~P~~~~~~~~~~~~~re~~~i~~l~~~~vP~p~~~~~~~~~~~g~pf~v~~~veGe  110 (321)
T COG3173          32 EISGGWSNDTFRLGDTGQKYVLR-KPPRGDPVESAHDEKREYRVIAALLDVDVPVPRAFGLCGEGYLGTPFYVMEWVEGE  110 (321)
T ss_pred             eccCCcccceEEEecCCceEEEe-cCCccccchhhhHHHhHHHHHHHhcCCCCCCcccccccccCCCCCceEEEEEecce
Confidence            33334444556555567777777 332 2233344556778888887643  23455677787766  779999999975


Q ss_pred             CHHHhhhcCCCCCCCCCCHHHHHHHH-HHHHHHHHHhhcC----------------------------------------
Q 038823          153 TLRDRIFGAPQPHFEPLLLKHRLKVA-MGIAHALAYLHVG----------------------------------------  191 (338)
Q Consensus       153 sL~~~l~~~~~~~~~~l~~~~~~~i~-~~i~~~l~~LH~~----------------------------------------  191 (338)
                      .+.+.+....      ..    -+++ ..+++.|.-||+-                                        
T Consensus       111 ~~~~~~~~~~------~~----~~~~~~~l~~~La~LH~ida~~~~~~g~~~~~~~rql~~~~~~~~~~~~~~~~~~p~~  180 (321)
T COG3173         111 VVWSALPPES------LG----RQFALDALADFLAELHSIDAAGLPDPGKPNAYRGRQLARWDDEYRRAKKELGGRIPLA  180 (321)
T ss_pred             eccCcCCccc------ch----HHHHHHHHHHHHHHHhCCCCcCCCCCCccCccccchhhHHHHHHHHHHHhccCCCchH
Confidence            4443332111      11    1122 3555666666621                                        


Q ss_pred             ---------------CCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          192 ---------------FPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       192 ---------------~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                                     ....++|+|+.+.|++++...-+-+.||+++....+.
T Consensus       181 ~~~~~Wl~~~~p~~~~~~~lvHGD~~~gNlii~~~~~~gVlDwe~~~lGDP~  232 (321)
T COG3173         181 DRLIKWLEANRPPWAGPPVLVHGDYRPGNLIIDPGRPTGVLDWELATLGDPL  232 (321)
T ss_pred             HHHHHHHHhcCCCcCCCceeeeCCcccCCEEEeCCCeeEEEeccccccCCcH
Confidence                           1247999999999999999888999999998776543

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=97.50  E-value=0.00095  Score=59.90  Aligned_cols=141  Identities=20%  Similarity=0.114  Sum_probs=82.1

Q ss_pred             ccccCCCceEEEEEEC--------CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcc-eeeeeeeeecCCcceEEEee
Q 038823           78 FIKQDSTYKLYKGFWQ--------ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKH-ILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        78 ~lg~G~~g~Vy~~~~~--------~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~n-iv~l~~~~~~~~~~~lv~e~  148 (338)
                      .+..|-...+|+....        +..+++|.......  ......+|..++..+...+ ..++++++..    .+|+||
T Consensus         5 ~l~gGltN~~y~v~~~~~~~~~~~~~~~vlRi~~~~~~--~~~~r~~E~~~~~~l~~~g~~P~~~~~~~~----~~v~e~   78 (302)
T cd05156           5 KISGGLTNAVYKVSLPDEDALSDEPRKVLLRVYGQSVE--LLIDRERELVVFARLSERNLGPKLYGIFPN----GRIEEF   78 (302)
T ss_pred             EecCcccceeEEEEcCCcccccCCCCeEEEEEecCCCc--ceechHHHHHHHHHHHhCCCCCceEEEeCC----Cchhhe
Confidence            4566777799998873        47888898765421  1234567888888875333 3455555532    368999


Q ss_pred             cCCCCHHHh-----------------hhcCCCC--C--CCCCC--HHHHHH--------------------------HHH
Q 038823          149 GEYTTLRDR-----------------IFGAPQP--H--FEPLL--LKHRLK--------------------------VAM  179 (338)
Q Consensus       149 ~~~gsL~~~-----------------l~~~~~~--~--~~~l~--~~~~~~--------------------------i~~  179 (338)
                      ++|..+...                 ++.....  .  ....+  +.....                          +..
T Consensus        79 i~G~~l~~~~~~~~~~~~~ia~~L~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (302)
T cd05156          79 IPSRTLTTEELRDPDISAEIARRMAKLHSIVVPLSPEERDLTPAIWKLLKQWLDLAETVIEIVDSDSEKLLEVELSLFLE  158 (302)
T ss_pred             eCCCcCCHhHcCCcHHHHHHHHHHHHhhCCCCCCCCCcCcccchHHHHHHHHHHHhhhhhhhcccchhhhhhhhHHHHHH
Confidence            998766431                 1111110  0  00011  111111                          112


Q ss_pred             HHHHHHHHhhc------CCCCCeeecCCCCCceeeCCC----CceEEecCCCCcc
Q 038823          180 GIAHALAYLHV------GFPRPIVFGNLISLCILFNEE----NVAKLFDFSESIS  224 (338)
Q Consensus       180 ~i~~~l~~LH~------~~~~~iiH~dik~~Nill~~~----~~~kl~Dfg~a~~  224 (338)
                      .+...+.+|-.      .....++|+|+.|.||+++++    +.+.++||..|..
T Consensus       159 ~~~~~~~~l~~~~~~~~~~~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~~  213 (302)
T cd05156         159 DEAKYLRFLLESTSEESGSPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYASY  213 (302)
T ss_pred             HHHHHHHHHHhhccCCCCCCceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCCC
Confidence            22233334431      236689999999999999875    8899999987653

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]

Probab=97.47  E-value=3.6e-05  Score=79.84  Aligned_cols=191  Identities=11%  Similarity=-0.093  Sum_probs=128.2

Q ss_pred             CceEEEEEE---CCeEEEEEEeCcCC----CchHHHHHHHHHHHHhccCCcceeeeeeeeec--CCcceEEEeecCCCCH
Q 038823           84 TYKLYKGFW---QERLISVMKYNESY----SDSACKFSINNIVYAAQMDHKHILKLIGCCLE--TPIPILVFEYGEYTTL  154 (338)
Q Consensus        84 ~g~Vy~~~~---~~~~vaik~~~~~~----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~~lv~e~~~~gsL  154 (338)
                      .+.-+++.+   .-..+.+++.+...    .+...+-...|.+.++...|+++...+.=...  ..+-+.+++|+.+|.+
T Consensus      1239 ~~~~~R~k~Lr~kid~Fk~~I~ke~d~e~LsePlkemll~e~de~~~~~h~~~~~~p~rI~ps~s~ee~~r~~~~~~g~~ 1318 (2724)
T KOG1826|consen 1239 NHFHFRNKWLRSKIDWFKFSIYKEYDFENLSEPLKEMLLSERDELREAKHYLTEVDPLRIPPSESTEEYIRSLYVEFGKL 1318 (2724)
T ss_pred             cceeeccchHhhhhceeEEEeehhhhHHHHhhHHHHhhhhhhhhhhhhhceeeecccccCCCCCChHHHHHHHHHHHhHH
Confidence            344566666   22234566654332    12223334556666667789998876654433  3356889999999999


Q ss_pred             HHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC--CCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCcee
Q 038823          155 RDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVG--FPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHI  232 (338)
Q Consensus       155 ~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~--~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~  232 (338)
                      ++.|.+.... ..+++..-....-.+...+..-+|..  ...--+|+++|+.|.++..+..+|++++|+.+...+.... 
T Consensus      1319 f~iIikg~ee-~~~ld~~~v~~~~kvsvl~~~~~ls~tnlg~T~v~~~Lkf~lpmIVtny~v~~gk~gLdKIknp~~sf- 1396 (2724)
T KOG1826|consen 1319 FSIIIKGLEE-SPDLDRSPVHLRHKVSVLNRNVILSLTNLGNTNVSKSLKFTLPMIVTNYNVKLGKGGLDKIKNPVLSF- 1396 (2724)
T ss_pred             HHHHHhcccc-CCcchhchHHHHHHHHHhccchhhhcccCCccchhhhhhhhccceecCCcccccccccccccCchHhh-
Confidence            9998765431 22344333333333335555555533  2335789999999999999999999999999844332221 


Q ss_pred             eeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCc
Q 038823          233 ITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTR  277 (338)
Q Consensus       233 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~  277 (338)
                       .+...+++-|++|+....-.++.++|+|..|+.+|+.--|..+|
T Consensus      1397 -~Gl~l~sp~~v~qli~N~ik~t~rsdilr~s~~ly~rs~~n~~f 1440 (2724)
T KOG1826|consen 1397 -FGLELCSPIYVLQLIKNEIKFTKRSDILRRSLSLYLRSDGNAYF 1440 (2724)
T ss_pred             -hhhhhCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccHHH
Confidence             15566788899999888888999999999999999988887765

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=97.37  E-value=0.00025  Score=62.81  Aligned_cols=148  Identities=14%  Similarity=0.088  Sum_probs=98.0

Q ss_pred             ccCHHHHHHhhc---CCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCC-----------------Cch----HHHHH
Q 038823           60 IFSAKELEIATN---NYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESY-----------------SDS----ACKFS  114 (338)
Q Consensus        60 ~~~~~~~~~~~~---~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~-----------------~~~----~~~~~  114 (338)
                      .+.+-.+....+   =+++.+.||-|.-+.||.+-+ .|.+.++|.-....                 +..    ..-..
T Consensus        78 GyDyLAlktL~~R~~v~svGnqIGVGKESDIY~v~d~~G~~~~lK~HRLGRtSFR~Vk~kRDY~r~r~~~sWlyLSRlaa  157 (465)
T KOG2268|consen   78 GYDYLALKTLSNRGSVESVGNQIGVGKESDIYVVADEEGNPLILKLHRLGRTSFRNVKNKRDYLRKRKSGSWLYLSRLAA  157 (465)
T ss_pred             cchHHHHHHHHhcchhhhhccccccccccceEEEecCCCCchhHHHHhhhhhhHHHhhhhhhhHhcCCccchhhhHHHHH
Confidence            344444444333   357789999999999999999 78888887642211                 000    12234


Q ss_pred             HHHHHHHhccC-Cc-ceeeeeeeeecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 038823          115 INNIVYAAQMD-HK-HILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGF  192 (338)
Q Consensus       115 ~~e~~~l~~l~-h~-niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~  192 (338)
                      .+|+..|+.|. |. -+++.+++    +.-++|||++.+..|...-.-        .+..++..-+..+.   --|-   
T Consensus       158 ~kEfafmkaL~e~gfpVPkpiD~----~RH~Vvmelv~g~Pl~~v~~v--------~d~~~ly~~lm~~I---v~la---  219 (465)
T KOG2268|consen  158 TKEFAFMKALYERGFPVPKPIDH----NRHCVVMELVDGYPLRQVRHV--------EDPPTLYDDLMGLI---VRLA---  219 (465)
T ss_pred             HHHHHHHHHHHHcCCCCCCcccc----cceeeHHHhhcccceeeeeec--------CChHHHHHHHHHHH---HHHH---
Confidence            67888888885 33 24555554    345789999998888765422        23344443333333   3344   


Q ss_pred             CCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          193 PRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       193 ~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      ..|+||+|..--||++++++.++++||--....
T Consensus       220 ~~GlIHgDFNEFNimv~dd~~i~vIDFPQmvS~  252 (465)
T KOG2268|consen  220 NHGLIHGDFNEFNIMVKDDDKIVVIDFPQMVST  252 (465)
T ss_pred             HcCceecccchheeEEecCCCEEEeechHhhcc
Confidence            789999999999999999999999999654333

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=97.32  E-value=0.003  Score=57.10  Aligned_cols=143  Identities=12%  Similarity=0.119  Sum_probs=96.3

Q ss_pred             cCCccccCCCceEEEEEE-CCeEEEEEEeCcCC--------------------Cch-----HHHHHHHHHHHHhccCCcc
Q 038823           75 ERKFIKQDSTYKLYKGFW-QERLISVMKYNESY--------------------SDS-----ACKFSINNIVYAAQMDHKH  128 (338)
Q Consensus        75 ~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~--------------------~~~-----~~~~~~~e~~~l~~l~h~n  128 (338)
                      +...|..|--+-||.+.. +|..+|||+++...                    +..     -.-+...|++-|++|+...
T Consensus       148 inGCiSTGKEANVYHat~~dG~~~AIKIYKTSILvFKDRdRYV~GEfRFRhgyck~NPRKMVk~WAEKE~RNLkRl~~aG  227 (520)
T KOG2270|consen  148 INGCISTGKEANVYHATEEDGSEFAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKHNPRKMVKTWAEKEMRNLKRLNNAG  227 (520)
T ss_pred             cccccccCccceeEeeecCCCceEEEEEEeeeEEEEechhhhccceeeeecccccCCcHHHHHHHHHHHHHHHHHHHhcC
Confidence            346788899999999998 88889999985321                    000     1123456777777776555


Q ss_pred             eeeeeeeeecCCcceEEEeecCCCCHHH-hhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCcee
Q 038823          129 ILKLIGCCLETPIPILVFEYGEYTTLRD-RIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCIL  207 (338)
Q Consensus       129 iv~l~~~~~~~~~~~lv~e~~~~gsL~~-~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nil  207 (338)
                      |.-.--....  .-.|||+|+..-.... .|..      ..++...+..+-.+++.-+.-|-+  ...+||.||+--|+|
T Consensus       228 IP~PePIlLk--~hVLVM~FlGrdgw~aPkLKd------~~ls~~ka~~~Y~~~v~~MR~lY~--~c~LVHADLSEfN~L  297 (520)
T KOG2270|consen  228 IPCPEPILLK--NHVLVMEFLGRDGWAAPKLKD------ASLSTSKARELYQQCVRIMRRLYQ--KCRLVHADLSEFNLL  297 (520)
T ss_pred             CCCCCceeee--cceEeeeeccCCCCcCccccc------ccCChHHHHHHHHHHHHHHHHHHH--Hhceeccchhhhhhe
Confidence            4321111111  2369999987432211 2211      257777777777888888887765  668999999999999


Q ss_pred             eCCCCceEEecCCCCcccCCC
Q 038823          208 FNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       208 l~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      + .+|.+.|+|.+-+....++
T Consensus       298 y-hdG~lyiIDVSQSVE~DHP  317 (520)
T KOG2270|consen  298 Y-HDGKLYIIDVSQSVEHDHP  317 (520)
T ss_pred             E-ECCEEEEEEccccccCCCh
Confidence            8 5689999999988766554

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=97.19  E-value=0.0052  Score=54.59  Aligned_cols=73  Identities=12%  Similarity=-0.027  Sum_probs=47.9

Q ss_pred             CCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC---CcceeeeeeeeecCCcceEEEeecCCC
Q 038823           76 RKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMD---HKHILKLIGCCLETPIPILVFEYGEYT  152 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~---h~niv~l~~~~~~~~~~~lv~e~~~~g  152 (338)
                      ...++.|....+|+...+++.+.+|.-...    ....|..|..-|+.|.   .-.+++.+++....+..+||+||++.+
T Consensus        22 ~~~v~GG~i~~a~~~~~~~~~~FvK~~~~~----~~~~f~~Ea~gL~~L~~~~~~~vP~vi~~G~~~~~~fLlle~l~~~   97 (288)
T PF03881_consen   22 IEPVSGGDINEAYRLDTDGGSYFVKVNSES----GRDMFEGEAEGLKALAEANPIRVPKVIAWGEYDDDAFLLLEFLEMG   97 (288)
T ss_dssp             EEEE--SSSSEEEEEETTS-EEEEEEEEGG----GCCHHHHHHHHHHHHCHTTTSBS--EEEEEE-SSCCEEEEE-----
T ss_pred             eEecCCCChhheEEEECCCccEEEEecChh----hHHHHHHHHHHHHHHHhcCCCCCCeEEEEEeecCCceEEEEeecCC
Confidence            456888999999998888889999987632    1245677877777773   456888999888777789999999866

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>PLN02756 S-methyl-5-thioribose kinase

Probab=97.14  E-value=0.015  Score=53.89  Aligned_cols=79  Identities=9%  Similarity=-0.003  Sum_probs=54.5

Q ss_pred             CCccccCCCceEEEEEECCeEEEEEEeCcCCC---c---hHHHHHHHHHHHHhccC---CcceeeeeeeeecCCcceEEE
Q 038823           76 RKFIKQDSTYKLYKGFWQERLISVMKYNESYS---D---SACKFSINNIVYAAQMD---HKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~---~---~~~~~~~~e~~~l~~l~---h~niv~l~~~~~~~~~~~lv~  146 (338)
                      .+.||.|....||+....++.++||.-.....   .   ....+...|...|+.+.   ..++++++.++.+  ..+++|
T Consensus        37 ~~eiggGn~N~VyrV~~~~~svVVKqa~p~~r~vga~wpl~~~R~~~Ea~aL~~~~~~~p~~VPkVy~~ded--~~vlvM  114 (418)
T PLN02756         37 IKEVGDGNLNFVYIVVSSSGSFVIKQALPYIRCIGESWPMTKERAYFEATALREHGRLCPDHVPEVYHFDRT--MALIGM  114 (418)
T ss_pred             EEEcCCCceeeEEEEEcCCccEEEEeCCccccCCCccccCCccHHHHHHHHHHHhhhcCCCCCCeEEEECCC--CCEEEE
Confidence            45689999999999888667788988763221   1   12344555667676653   3578889998874  357899


Q ss_pred             eecCC--CCHHH
Q 038823          147 EYGEY--TTLRD  156 (338)
Q Consensus       147 e~~~~--gsL~~  156 (338)
                      |++++  ..+.+
T Consensus       115 E~L~~~~~ilr~  126 (418)
T PLN02756        115 RYLEPPHIILRK  126 (418)
T ss_pred             eecCCcceehhh
Confidence            99986  34544

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=97.11  E-value=0.006  Score=53.99  Aligned_cols=32  Identities=28%  Similarity=0.376  Sum_probs=26.2

Q ss_pred             CCeeecCCCCCceeeCCCCc-eEEecCCCCccc
Q 038823          194 RPIVFGNLISLCILFNEENV-AKLFDFSESISI  225 (338)
Q Consensus       194 ~~iiH~dik~~Nill~~~~~-~kl~Dfg~a~~~  225 (338)
                      ..++|+|+.|.||++++++. .-|.||+.+...
T Consensus       185 ~~lvHGD~~~~Nilv~~~~~~~gviDWe~a~iG  217 (276)
T cd05152         185 TVLVHGDLHPGHILIDEDARVTGLIDWTEAKVG  217 (276)
T ss_pred             CeeEeCCCCCCcEEEeCCCCEEEEECcHhcccC
Confidence            45899999999999997555 569999977653

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>PLN02236 choline kinase

Probab=97.03  E-value=0.0054  Score=56.14  Aligned_cols=143  Identities=16%  Similarity=0.113  Sum_probs=81.9

Q ss_pred             CccccCCCceEEEEEE-C-----CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcce-eeeeeeeecCCcceEEEeec
Q 038823           77 KFIKQDSTYKLYKGFW-Q-----ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHI-LKLIGCCLETPIPILVFEYG  149 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~-~-----~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~  149 (338)
                      ..+..|-...+|+... +     +..++++...... ..... ..+|..+++.+...++ .++++++..+    .|.+|+
T Consensus        42 ~~l~gGlTN~~y~v~~~~~~~~~~~~~v~Ri~g~~t-~~~id-R~~E~~~~~~l~~~gl~P~~~~~~~~g----~v~efi  115 (344)
T PLN02236         42 IPLKGAMTNEVFQIKWPTKEGNLGRKVLVRIYGEGV-ELFFD-RDDEIRTFECMSRHGQGPRLLGRFPNG----RVEEFI  115 (344)
T ss_pred             EEcCCcccceeEEEEeCCCCCCCCCeEEEEEccCCC-Ceeec-hHHHHHHHHHHHHcCCCCceEEEECCc----eEEEee
Confidence            3455588889999876 2     2578888876542 22222 3678888888864444 3556655332    689999


Q ss_pred             CCCCHHHh-----------------hhcCCCCCCC-CCCHHHHHHHHHHH-----------------HHHHHHh----hc
Q 038823          150 EYTTLRDR-----------------IFGAPQPHFE-PLLLKHRLKVAMGI-----------------AHALAYL----HV  190 (338)
Q Consensus       150 ~~gsL~~~-----------------l~~~~~~~~~-~l~~~~~~~i~~~i-----------------~~~l~~L----H~  190 (338)
                      ++.+|...                 ++........ ...+..+.++..++                 ...+..|    ..
T Consensus       116 ~g~~l~~~~l~~~~~~~~ia~~L~~lH~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~L~~~~~~  195 (344)
T PLN02236        116 HARTLSAADLRDPEISALIAAKLREFHSLDMPGPKNVLLWDRLRNWLKEAKNLCSPEEAKEFRLDSLEDEINLLEKELSG  195 (344)
T ss_pred             CCCCCCHHHcCChHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhhcCcchhhhcCHHHHHHHHHHHHHHhcc
Confidence            87665421                 1111100000 11233333332221                 1111112    11


Q ss_pred             -CCCCCeeecCCCCCceeeCC-CCceEEecCCCCccc
Q 038823          191 -GFPRPIVFGNLISLCILFNE-ENVAKLFDFSESISI  225 (338)
Q Consensus       191 -~~~~~iiH~dik~~Nill~~-~~~~kl~Dfg~a~~~  225 (338)
                       ..+..++|+|+++.||++++ ++.+.++||..+...
T Consensus       196 ~~~~~~~cH~Dl~~~Nil~~~~~~~~~lID~Eya~~~  232 (344)
T PLN02236        196 DDQEIGFCHNDLQYGNIMIDEETRAITIIDYEYASYN  232 (344)
T ss_pred             cCCCceEEeCCCCcCcEEEeCCCCcEEEEeehhcccc
Confidence             12457899999999999986 468999999877543

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=96.88  E-value=0.014  Score=53.25  Aligned_cols=72  Identities=10%  Similarity=-0.038  Sum_probs=47.6

Q ss_pred             ccccCCCceEEEEEECC--eEEEEEEeCcCC------CchHHHHHHHHHHHHhccC--Cc-ceeeeeeeeecCCcceEEE
Q 038823           78 FIKQDSTYKLYKGFWQE--RLISVMKYNESY------SDSACKFSINNIVYAAQMD--HK-HILKLIGCCLETPIPILVF  146 (338)
Q Consensus        78 ~lg~G~~g~Vy~~~~~~--~~vaik~~~~~~------~~~~~~~~~~e~~~l~~l~--h~-niv~l~~~~~~~~~~~lv~  146 (338)
                      .||.|....||++...+  +.|+||.-....      -.-...+..-|...|+...  -| .++++|.+  +.....+||
T Consensus         2 EigdGnlN~VfrV~~~~g~~svIVKQAlp~vRv~g~~wpl~~~R~~~E~~~L~~~~~~~P~~vP~vy~~--D~e~~~~vM   79 (370)
T TIGR01767         2 EVGDGNLNLVFHVYDQEGDRAAIVKQALPYVRVVGESWPLTLDRARIESSALIRQGEHVPHLVPRIFHF--DTEMAVTVM   79 (370)
T ss_pred             cCCCCceEEEEEEEcCCCCeeEEEEEcCHHHhhcCCCCCCCccHHHHHHHHHHHhhccCccccCeEEEE--ccccceehH
Confidence            47999999999999833  579998764221      1223455667777776653  34 46666655  344456899


Q ss_pred             eecCC
Q 038823          147 EYGEY  151 (338)
Q Consensus       147 e~~~~  151 (338)
                      |+++.
T Consensus        80 EdL~~   84 (370)
T TIGR01767        80 EDLSH   84 (370)
T ss_pred             hhCcc
Confidence            99864

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=96.88  E-value=0.0065  Score=51.14  Aligned_cols=116  Identities=16%  Similarity=0.052  Sum_probs=74.5

Q ss_pred             CCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCCCHHHhhhcC
Q 038823           82 DSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGA  161 (338)
Q Consensus        82 G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~  161 (338)
                      |+.++.-.++.+=.+..+|++.....--....|.++.+++++++  .|+++..-  ..-.+.++.|+|-....       
T Consensus        73 ~gNsTl~~~kt~iG~L~lKKi~slp~~~~~~~y~nky~v~Armh--GilrL~ND--n~~~yGvIlE~Cy~~~i-------  141 (308)
T PF07387_consen   73 NGNSTLLIGKTKIGPLFLKKIRSLPCCINDALYFNKYRVFARMH--GILRLKND--NNYKYGVILERCYKIKI-------  141 (308)
T ss_pred             CCceEEEEeccccchhhhhhccCCCcccchhhhhhhhhHHHHhh--heeEeecC--CCceeEEEEeeccCccc-------
Confidence            45555555554335566777764433223356788999998875  57777632  33456788888863211       


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          162 PQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       162 ~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                                ...-.+.++ +.+|.-.|++ ..+.+|+|..|+||+=|..|.+||.|=+
T Consensus       142 ----------~~~N~i~ag-i~~L~~fH~~-~~~~lHGD~np~NiM~D~~G~lKlVDP~  188 (308)
T PF07387_consen  142 ----------NFSNFITAG-IKDLMDFHSE-NQHCLHGDCNPDNIMCDKFGYLKLVDPV  188 (308)
T ss_pred             ----------chhHHHHHh-HHHHHHhhcc-CCCeecCCCChhheeecCCCCEEecChh
Confidence                      011112111 3556667754 6799999999999999999999999865

The function of this family is unknown.

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=96.61  E-value=0.024  Score=51.02  Aligned_cols=33  Identities=18%  Similarity=0.282  Sum_probs=29.1

Q ss_pred             CCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          193 PRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       193 ~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      ..+++|+|+.+.|++++.++.+.++||..+...
T Consensus       195 ~~~lcHgD~~~~Nvl~~~~~~~~iIDfd~~~~d  227 (309)
T TIGR02904       195 RTVLVHGKLSLSHFLYDETRGGYFINFEKASFA  227 (309)
T ss_pred             ceeeeCCCCcHHhEEEcCCCCEEEEEhhhcccC
Confidence            568999999999999999999999999877553

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=96.54  E-value=0.018  Score=52.35  Aligned_cols=143  Identities=17%  Similarity=0.134  Sum_probs=79.8

Q ss_pred             CccccCCCceEEEEEECC-----eEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcce-eeeeeeeecCCcceEEEeecC
Q 038823           77 KFIKQDSTYKLYKGFWQE-----RLISVMKYNESYSDSACKFSINNIVYAAQMDHKHI-LKLIGCCLETPIPILVFEYGE  150 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~~~-----~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~~  150 (338)
                      +.|..|-...+|+....+     ..|.++....... .. -...+|..+++.+...++ +++++++..+    +|.+|++
T Consensus        20 ~~l~gGlTN~~~~v~~~~~~~~~~~~v~Ri~g~~t~-~~-IdR~~E~~il~~l~~~gl~P~~l~~~~~G----~i~~fi~   93 (330)
T PLN02421         20 ERISGGITNLLLKVSVKEENGNEVSVTVRLFGPNTD-YV-IDRERELQAIKYLSAAGFGAKLLGVFGNG----MIQSFIN   93 (330)
T ss_pred             EEeCCcccceEEEEEecCCCCCCceEEEEEecCCcC-eE-echHHHHHHHHHHHhcCCCCceeEEeCCc----Eeehhhc
Confidence            345557778899987632     3788888765422 21 233578888888865554 4566655322    5899988


Q ss_pred             CCCHHH-----------------hhhcCCCCCCC-CCCHHHHHHHHHHH----------------------HHHHH----
Q 038823          151 YTTLRD-----------------RIFGAPQPHFE-PLLLKHRLKVAMGI----------------------AHALA----  186 (338)
Q Consensus       151 ~gsL~~-----------------~l~~~~~~~~~-~l~~~~~~~i~~~i----------------------~~~l~----  186 (338)
                      +-.|..                 .++....+... +-.+..+.++..++                      ..-+.    
T Consensus        94 g~~l~~~~l~~~~~~~~ia~~L~~lH~~~~~~~~~~~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  173 (330)
T PLN02421         94 ARTLTPSDMRKPKVAAEIAKELRRLHQVEIPGSKEPQLWNDIFKFYEKASTVKFEDPEKQKKYETISFEELRDEIVELKE  173 (330)
T ss_pred             CCCCChHHCCCHHHHHHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHhhhcccCcHHHhhhhcccCHHHHHHHHHHHHH
Confidence            665421                 01111110000 11233332222221                      11111    


Q ss_pred             Hhhc-CCCCCeeecCCCCCceeeCC-CCceEEecCCCCccc
Q 038823          187 YLHV-GFPRPIVFGNLISLCILFNE-ENVAKLFDFSESISI  225 (338)
Q Consensus       187 ~LH~-~~~~~iiH~dik~~Nill~~-~~~~kl~Dfg~a~~~  225 (338)
                      .+.. ..+.-.+|.|+.+.||++++ ++.++++||..|...
T Consensus       174 ~~~~~~~~~v~CHnDl~~~NiL~~~~~~~l~lID~EYag~n  214 (330)
T PLN02421        174 ITDSLKAPVVFAHNDLLSGNLMLNEDEGKLYFIDFEYGSYS  214 (330)
T ss_pred             HhccCCCCeEEEECCCCcccEEEeCCCCcEEEEcccccCCC
Confidence            1110 12345899999999999974 578999999877544

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=96.53  E-value=0.035  Score=49.91  Aligned_cols=31  Identities=19%  Similarity=0.213  Sum_probs=26.5

Q ss_pred             CCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          193 PRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       193 ~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ..+++|+|+.+.||+++. +.+.|+||+.+..
T Consensus       186 ~~~liHgD~~~~Nil~~~-~~i~lIDfd~~~~  216 (313)
T TIGR02906       186 IRGFCHQDYAYHNILLKD-NEVYVIDFDYCTI  216 (313)
T ss_pred             cCceEcCCCCcccEEEeC-CcEEEEECccccc
Confidence            468999999999999987 6789999986644

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=96.46  E-value=0.0085  Score=50.73  Aligned_cols=32  Identities=28%  Similarity=0.313  Sum_probs=22.4

Q ss_pred             CCCeeecCCCCCceee-CCCCceEEecCCCCcc
Q 038823          193 PRPIVFGNLISLCILF-NEENVAKLFDFSESIS  224 (338)
Q Consensus       193 ~~~iiH~dik~~Nill-~~~~~~kl~Dfg~a~~  224 (338)
                      +..++|+|+.|.||++ +.++.++++||..|..
T Consensus       142 ~~v~cHnDl~~~Nil~~~~~~~~~lIDfEya~~  174 (211)
T PF01633_consen  142 PLVFCHNDLNPGNILINNKDGEVKLIDFEYAGY  174 (211)
T ss_dssp             GEEEE-S--SGGGEEETSSSSCEEE--GTT-EE
T ss_pred             CceEeeccCccccEEeccCCCeEEEecHHHHhh
Confidence            4578999999999999 8889999999987654

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>COG3001 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.18  E-value=0.053  Score=46.07  Aligned_cols=76  Identities=12%  Similarity=-0.008  Sum_probs=56.8

Q ss_pred             CCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC---CcceeeeeeeeecCCcceEEEeecCCC
Q 038823           76 RKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMD---HKHILKLIGCCLETPIPILVFEYGEYT  152 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~---h~niv~l~~~~~~~~~~~lv~e~~~~g  152 (338)
                      .+.+..|.--..|...+...++.+|.-..    .....|..|+.-|..|.   .-.+.+++.+..+.+..|+|+||++-+
T Consensus        21 r~~v~gG~inea~~v~dg~~~~FvK~n~~----~~~~~f~AEa~gL~~la~s~ti~VP~vi~~G~~~~~sylVle~L~~~   96 (286)
T COG3001          21 REEVSGGDINEAWRLRDGTDPFFVKCNQR----EQLSMFTAEADGLELLARSNTITVPKVIAVGASRDHSYLVLEYLPTG   96 (286)
T ss_pred             ccccCCccccceeEeecCCcceEEEecch----hhHHHHHHHHHHHHHHHhcCCccccceEEecCCCCeeEEEEeeccCC
Confidence            45567777777788777778888888532    23456777877776664   456888898888999999999999876


Q ss_pred             CHH
Q 038823          153 TLR  155 (338)
Q Consensus       153 sL~  155 (338)
                      .+.
T Consensus        97 ~~d   99 (286)
T COG3001          97 PLD   99 (286)
T ss_pred             CCC
Confidence            665

>PRK12396 5-methylribose kinase; Reviewed

Probab=96.09  E-value=0.042  Score=50.80  Aligned_cols=74  Identities=8%  Similarity=-0.094  Sum_probs=50.1

Q ss_pred             CCccccCCCceEEEEEEC--CeEEEEEEeCcCC----C-chHHHHHHHHHHHHhccC--Cc-ceeeeeeeeecCCcceEE
Q 038823           76 RKFIKQDSTYKLYKGFWQ--ERLISVMKYNESY----S-DSACKFSINNIVYAAQMD--HK-HILKLIGCCLETPIPILV  145 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~~--~~~vaik~~~~~~----~-~~~~~~~~~e~~~l~~l~--h~-niv~l~~~~~~~~~~~lv  145 (338)
                      .+.||.|.-..||++.+.  ++.|+||.-....    + .-..++..-|...|+...  .| +++++|.+-  .....+|
T Consensus        34 ~~eigdGnlN~VfrV~~~~~~~svIVKQAlp~vRv~~swpL~~~R~~~E~~aL~~~~~~~P~~VP~vy~~D--~e~~~~v  111 (409)
T PRK12396         34 CKEIGDGNLNYVFRVWDEQKNISVIVKQAGDTARISDEFKLSTNRIRIESDVLQLEEELAPGLVPKVYLFD--SVMNCCV  111 (409)
T ss_pred             eeEcCCCceEEEEEEeeCCCCceEEEEeccHhhccCCCCCCChHHHHHHHHHHHHHHhhCCCcCCeEEEEC--cHHhhHH
Confidence            457899999999999983  6789998764322    1 233566777888887764  34 566676653  3345688


Q ss_pred             EeecCC
Q 038823          146 FEYGEY  151 (338)
Q Consensus       146 ~e~~~~  151 (338)
                      ||+++.
T Consensus       112 MEdL~~  117 (409)
T PRK12396        112 MEDLSD  117 (409)
T ss_pred             HHhCcc
Confidence            888754

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=96.04  E-value=0.023  Score=51.46  Aligned_cols=74  Identities=23%  Similarity=0.106  Sum_probs=56.7

Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                      ..|++|++-. +++.. +.        --.+++...++.+.+..+.-+..  ..+.-|||+...|||++ +|++.|+||.
T Consensus       300 y~yl~~kdhg-t~is~-ik--------~~~~~e~lsff~s~~sil~~lek--kf~fehrnlt~~niLId-~GnvtLIDfk  366 (488)
T COG5072         300 YLYLHFKDHG-TPISI-IK--------ADRSEEELSFFWSCISILDILEK--KFPFEHRNLTLDNILID-EGNVTLIDFK  366 (488)
T ss_pred             EEEEEEecCC-ceeee-ee--------cccHHHHHHHHHHHHHHHhhhhh--cCCcccccccccceeee-cCceEEEEee
Confidence            3466666543 45532 21        34688999999998888888874  67889999999999999 9999999999


Q ss_pred             CCcccCC
Q 038823          221 ESISIPE  227 (338)
Q Consensus       221 ~a~~~~~  227 (338)
                      +++....
T Consensus       367 lsRl~~~  373 (488)
T COG5072         367 LSRLSYS  373 (488)
T ss_pred             eeecccC
Confidence            9985443

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=95.86  E-value=0.34  Score=43.95  Aligned_cols=142  Identities=17%  Similarity=0.245  Sum_probs=78.8

Q ss_pred             cccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcc------eeeeeeeee--cCC--cceEEEee
Q 038823           79 IKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKH------ILKLIGCCL--ETP--IPILVFEY  148 (338)
Q Consensus        79 lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~n------iv~l~~~~~--~~~--~~~lv~e~  148 (338)
                      |.+ .-..+|+...+++.+++|........   ....-|...|..|.-.+      +..+-|-..  -..  ...-+++|
T Consensus        34 l~s-~eN~~f~~~~~~g~~iLki~~~~~~~---~~i~~el~~l~~La~~~i~v~~Pl~~~dG~~l~~~~~~~r~a~lf~~  109 (331)
T COG2334          34 LNS-EENSNFRVQTEDGRYILKIYRPGWTR---AEIPFELALLQHLAERGIPVPAPLPSLDGELLEALSGGPRPAALFEY  109 (331)
T ss_pred             ccc-ccCceEEEEecCCCeEEEEecCCCCH---HHHHHHHHHHHHHHHcCCCCCCCccCCCcchhhhccCCceeEEEEEe
Confidence            444 45678998886666688888765222   34455666666653222      222222111  123  67889999


Q ss_pred             cCCCCHHH-h--------------h----hcCC--CCC-CCCCCHHH-------------HHHHHHHHHHHHHHhhcC--
Q 038823          149 GEYTTLRD-R--------------I----FGAP--QPH-FEPLLLKH-------------RLKVAMGIAHALAYLHVG--  191 (338)
Q Consensus       149 ~~~gsL~~-~--------------l----~~~~--~~~-~~~l~~~~-------------~~~i~~~i~~~l~~LH~~--  191 (338)
                      ++|..+.. .              +    .+-.  ++. .....|..             ......++...+..+...  
T Consensus       110 l~G~~~~~~~~~~~~~~lG~~LgrlH~a~~~f~~~~p~~~~~~~w~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~~~  189 (331)
T COG2334         110 LPGRPLERDDNAEQLEELGRMLGRLHLALRGFPFERPNALRRLEWDILEPRALLRLDLVEPEDLRAALLAALDRLLARLP  189 (331)
T ss_pred             cCCcCcCCCCcHHHHHHHHHHHHHHHHHhCcCCccCCCcccccchhhhcchhhhhhcccCchhhHHHHHHHHHHHHhhch
Confidence            99887772 0              0    0111  000 11222320             111233334444444322  


Q ss_pred             --CCCC---eeecCCCCCceeeCCCCc-eEEecCCCCcc
Q 038823          192 --FPRP---IVFGNLISLCILFNEENV-AKLFDFSESIS  224 (338)
Q Consensus       192 --~~~~---iiH~dik~~Nill~~~~~-~kl~Dfg~a~~  224 (338)
                        .+..   +||+|+.|.||+++.+.. +.+.||+-+..
T Consensus       190 ~~lp~~~~~iIH~D~~~~NVl~d~~~~~~g~iDFdDa~~  228 (331)
T COG2334         190 AHLPALGDQIIHGDLHPDNVLFDDDTDVSGFIDFDDAGY  228 (331)
T ss_pred             hhCCcccceeeecCCCccceeEcCCCCeeeEEEcccccc
Confidence              1223   999999999999998875 89999997754

>PF04655 APH_6_hur: Aminoglycoside/hydroxyurea antibiotic resistance kinase; InterPro: IPR006748 The aminoglycosides are a large group of biologically active bacterial secondary metabolites, best known for their antibiotic properties []

Probab=95.58  E-value=0.1  Score=45.49  Aligned_cols=78  Identities=8%  Similarity=-0.113  Sum_probs=53.5

Q ss_pred             CCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeec-CCCC
Q 038823           76 RKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYG-EYTT  153 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~-~~gs  153 (338)
                      ...+..|..+.|+.+.. +|.++++|.........   ........|+..+-...|++++.-.+.  ..+.+|.+ ++.+
T Consensus         7 ~~~~~~g~~s~V~pv~~~dG~~avLKl~~p~~~~~---~E~~g~~~L~~w~G~GaVrll~~d~~~--~AlLLErl~~g~~   81 (253)
T PF04655_consen    7 DGPPAHGSSSLVVPVRRADGTPAVLKLAPPHAEAE---HEARGEAALRWWNGRGAVRLLAADPER--GALLLERLDPGRS   81 (253)
T ss_pred             CCCCCCCcceEEEEEEcCCCCeEEEEecCCcccch---hhhhHHhHhheeCCCCceeeecccccc--chhhhhhccCCCc
Confidence            34567788999999988 88999999987552111   111122457777888889999876443  45888998 5557


Q ss_pred             HHHhh
Q 038823          154 LRDRI  158 (338)
Q Consensus       154 L~~~l  158 (338)
                      |.++.
T Consensus        82 L~~~~   86 (253)
T PF04655_consen   82 LASLP   86 (253)
T ss_pred             hhhcc
Confidence            76654

Aminoglycoside phosphotransferases achieve inactivation of these enzymes by phosphorylation, utilising ATP. Likewise, hydroxyurea is inactivated by phosphorylation of the hydroxy group in the hydroxylamine moiety.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0006468 protein phosphorylation, 0019748 secondary metabolic process

>PRK06148 hypothetical protein; Provisional

Probab=95.51  E-value=0.25  Score=51.91  Aligned_cols=33  Identities=18%  Similarity=0.463  Sum_probs=27.1

Q ss_pred             CCCeeecCCCCCceeeCCCC--ceE-EecCCCCccc
Q 038823          193 PRPIVFGNLISLCILFNEEN--VAK-LFDFSESISI  225 (338)
Q Consensus       193 ~~~iiH~dik~~Nill~~~~--~~k-l~Dfg~a~~~  225 (338)
                      +..+||+|+.+.|||++.++  .+. |+|||-+...
T Consensus       202 p~~vIHgDln~~NiLv~~~~~~~isGiIDFgDa~~~  237 (1013)
T PRK06148        202 PAQVIHNDANDYNILVDADDGERISGLIDFGDAVHA  237 (1013)
T ss_pred             CcceECCCCCcccEEEcCCCCcceEEEEECcccccc
Confidence            56799999999999999875  454 9999977543

>PRK11768 serine/threonine protein kinase; Provisional

Probab=95.25  E-value=0.98  Score=41.00  Aligned_cols=94  Identities=9%  Similarity=0.078  Sum_probs=50.3

Q ss_pred             ccccCHHHHHHhhcCCCcC---C-ccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcc--ee
Q 038823           58 YRIFSAKELEIATNNYDER---K-FIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKH--IL  130 (338)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~---~-~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv  130 (338)
                      ...++.+.+..+...+-..   + ..-.+.-..||+... ++..+++|......  ........|+..+..|....  ++
T Consensus         8 ~~~l~p~~~~~a~~~~g~~~~~~~~~l~s~eN~vy~v~~~~~~~~vlKv~r~~~--~~~~~i~~E~~~l~~L~~~gipv~   85 (325)
T PRK11768          8 FQTLTPDLILDALESLGLRVDGRLLALNSYENRVYQFGDEDGRRVVAKFYRPER--WSDAQILEEHAFALELAEAEIPVV   85 (325)
T ss_pred             CCCCChHHHHHHHHHcCCCCccceEeeccccceEEEEecCCCCEEEEEEcCccc--CCHHHHHHHHHHHHHHHHCCCCCC
Confidence            3445565655555444221   1 122234567899887 56678888875432  12244556777776664211  22


Q ss_pred             eee---e--eeecCCcceEEEeecCCCC
Q 038823          131 KLI---G--CCLETPIPILVFEYGEYTT  153 (338)
Q Consensus       131 ~l~---~--~~~~~~~~~lv~e~~~~gs  153 (338)
                      ...   |  ....++..+.++++++|..
T Consensus        86 ~p~~~~G~~~~~~~g~~~~l~~~~~G~~  113 (325)
T PRK11768         86 APLAFNGQTLHEHQGFRFALFPRRGGRA  113 (325)
T ss_pred             CCccCCCCEEEEECCEEEEEEeeeCCCC
Confidence            211   1  1122345788999988754

>PTZ00384 choline kinase; Provisional

Probab=95.16  E-value=0.18  Score=46.90  Aligned_cols=73  Identities=15%  Similarity=0.108  Sum_probs=44.4

Q ss_pred             CccccCCCceEEEEEEC-C--eE-----EEEEEeCcCCCchHHHHHHHHHHHHhccCCcce-eeeeeeeecCCcceEEEe
Q 038823           77 KFIKQDSTYKLYKGFWQ-E--RL-----ISVMKYNESYSDSACKFSINNIVYAAQMDHKHI-LKLIGCCLETPIPILVFE  147 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~~-~--~~-----vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e  147 (338)
                      +.|..|-...+|++... +  ..     |.+...... .... -.-.+|..+++.+...++ .++++.+..    +++.|
T Consensus        56 ~~l~gGLTN~l~~v~~~~~~~~~~~~k~Vl~R~~g~~-~~l~-IdR~~E~~i~~~Ls~~glgP~l~~~f~~----g~l~e  129 (383)
T PTZ00384         56 KKMNNGITNQVYQATLVDGDKDRYPIKSVCIKKSSTY-NSLV-IDNDLQYNIAKLLGDNNFGPKIIGRFGD----FTIQE  129 (383)
T ss_pred             EEeCCcccceEEEEEecCCCCCccccceEEEEeccCC-CceE-eccHHHHHHHHHHHhCCCCCeEEEecCC----EEEEE
Confidence            45556888899999762 2  12     444443222 1111 223578889999975554 455665542    59999


Q ss_pred             ecCCCCHH
Q 038823          148 YGEYTTLR  155 (338)
Q Consensus       148 ~~~~gsL~  155 (338)
                      |++|-+|.
T Consensus       130 fIeGr~l~  137 (383)
T PTZ00384        130 WVEGNTMG  137 (383)
T ss_pred             EeccccCC
Confidence            99987654

>PTZ00296 choline kinase; Provisional

Probab=94.52  E-value=0.37  Score=45.65  Aligned_cols=73  Identities=15%  Similarity=0.059  Sum_probs=45.1

Q ss_pred             CCccccCCCceEEEEEEC----------CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCccee-eeeeeeecCCcceE
Q 038823           76 RKFIKQDSTYKLYKGFWQ----------ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHIL-KLIGCCLETPIPIL  144 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~~----------~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv-~l~~~~~~~~~~~l  144 (338)
                      .+.|..|-.-.+|+....          +..|.+++...... .- -....|..+++.+...+|- ++++.+.    -+.
T Consensus       110 i~~l~gGlTN~~f~v~~~~~~~~~~~~~~~~~lvRiyG~~te-~l-IdR~~E~~v~~~ls~~gi~P~l~~~f~----gg~  183 (442)
T PTZ00296        110 VNQILSGLTNQLFEVSLKEETANNYPSIRRRVLFRIYGKDVD-EL-YNPISEFEVYKTMSKYRIAPQLLNTFS----GGR  183 (442)
T ss_pred             EEEecCcccCceEEEEecCCCCccccCcCceEEEEecCCCcc-ce-eCHHHHHHHHHHHHHCCCCCceEEEeC----CCE
Confidence            345666777889988762          35688888765422 11 2335677777777644443 4555442    246


Q ss_pred             EEeecCCCCH
Q 038823          145 VFEYGEYTTL  154 (338)
Q Consensus       145 v~e~~~~gsL  154 (338)
                      |.||++|-+|
T Consensus       184 I~efi~g~~l  193 (442)
T PTZ00296        184 IEEWLYGDPL  193 (442)
T ss_pred             EEEeeCCccC
Confidence            8999997644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	338
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		6e-21
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		8e-21
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		8e-21
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		7e-20
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		4e-12
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		4e-12
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		5e-12
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		5e-12
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		1e-11
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		1e-11
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		2e-10
3orm_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain D76a		2e-09
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		3e-09
3f61_A	311	Crystal Structure Of M. Tuberculosis Pknb Leu33aspV		3e-09
3f69_A	311	Crystal Structure Of The Mycobacterium Tuberculosis		3e-09
3ori_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain L33d		3e-09
1mru_A	311	Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycob		3e-09
1o6y_A	299	Catalytic Domain Of Pknb Kinase From Mycobacterium		4e-09
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		9e-08
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		2e-07
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		4e-07
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		4e-07
4e20_A	290	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		1e-06
4e1z_A	291	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		1e-06
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		8e-06
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		8e-06
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		8e-06
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		9e-06
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		9e-06
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		9e-06
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		1e-05
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		1e-05
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		1e-05
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		1e-05
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		1e-05
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		1e-05
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		2e-05
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		2e-05
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		2e-05
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		2e-05
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		2e-05
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		2e-05
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		2e-05
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		2e-05
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		2e-05
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		3e-05
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		3e-05
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		3e-05
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		3e-05
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		3e-05
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		3e-05
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		4e-05
2zm3_A	308	Complex Structure Of Insulin-Like Growth Factor Rec		5e-05
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		5e-05
1ir3_A	306	Phosphorylated Insulin Receptor Tyrosine Kinase In		5e-05
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		5e-05
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		6e-05
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		6e-05
3lw0_A	304	Igf-1rk In Complex With Ligand Msc1609119a-1 Length		6e-05
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		6e-05
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		6e-05
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		6e-05
3ekk_A	307	Insulin Receptor Kinase Complexed With An Inhibitor		6e-05
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		7e-05
1p4o_A	322	Structure Of Apo Unactivated Igf-1r Kinase Domain A		7e-05
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		7e-05
1p14_A	306	Crystal Structure Of A Catalytic-Loop Mutant Of The		7e-05
2ivs_A	314	Crystal Structure Of Non-Phosphorylated Ret Tyrosin		7e-05
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		7e-05
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		7e-05
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		8e-05
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		8e-05
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		8e-05
3kxx_A	317	Structure Of The Mutant Fibroblast Growth Factor Re		8e-05
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		8e-05
1jqh_A	308	Igf-1 Receptor Kinase Domain Length = 308		8e-05
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		9e-05
1irk_A	306	Crystal Structure Of The Tyrosine Kinase Domain Of		9e-05
3rhx_B	306	Crystal Structure Of The Catalytic Domain Of Fgfr1		1e-04
1fgk_A	310	Crystal Structure Of The Tyrosine Kinase Domain Of		1e-04
2pl0_A	289	Lck Bound To Imatinib Length = 289		1e-04
3c4f_A	302	Fgfr Tyrosine Kinase Domain In Complex With 3-(3- M		1e-04
4f63_A	309	Crystal Structure Of Human Fibroblast Growth Factor		1e-04
3gql_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		1e-04
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		1e-04
3js2_A	317	Crystal Structure Of Minimal Kinase Domain Of Fibro		1e-04
3b2t_A	311	Structure Of Phosphotransferase Length = 311		1e-04
1rqq_A	306	Crystal Structure Of The Insulin Receptor Kinase In		1e-04
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		1e-04
3o23_A	305	Human Unphosphorylated Igf1-R Kinase Domain In Comp		1e-04
2ivv_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		1e-04
2ivt_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		1e-04
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		1e-04
3tt0_A	382	Co-Structure Of Fibroblast Growth Factor Receptor 1		1e-04
1gjo_A	316	The Fgfr2 Tyrosine Kinase Domain Length = 316		1e-04
2pzp_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		1e-04
2psq_A	370	Crystal Structure Of Unphosphorylated Unactivated W		2e-04
3ri1_A	313	Crystal Structure Of The Catalytic Domain Of Fgfr2		2e-04
2pvy_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-04
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		2e-04
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		2e-04
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		2e-04
2pvf_A	334	Crystal Structure Of Tyrosine Phosphorylated Activa		2e-04
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		2e-04
3cly_A	334	Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase		2e-04
1zys_A	273	Co-Crystal Structure Of Checkpoint Kinase Chk1 With		2e-04
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		2e-04
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		2e-04
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		2e-04
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		2e-04
3gqi_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		2e-04
2z8c_A	303	Phosphorylated Insulin Receptor Tyrosine Kinase In		2e-04
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		2e-04
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		2e-04
2pz5_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-04
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		2e-04
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		2e-04
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		2e-04
1i44_A	306	Crystallographic Studies Of An Activation Loop Muta		2e-04
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		2e-04
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		2e-04
2pwl_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-04
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		2e-04
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		2e-04
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		2e-04
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		2e-04
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		2e-04
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		2e-04
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		2e-04
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		2e-04
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		2e-04
3lvp_A	336	Crystal Structure Of Bisphosphorylated Igf1-R Kinas		3e-04
2j0j_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		3e-04
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		3e-04
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		3e-04
2pzr_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		3e-04
2gcd_A	309	Tao2 Kinase Domain-Staurosporine Structure Length =		3e-04
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		3e-04
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		3e-04
2j0k_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		3e-04
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		3e-04
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		3e-04
1u5q_A	348	Crystal Structure Of The Tao2 Kinase Domain: Activa		3e-04
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		3e-04
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		3e-04
3i81_A	315	Crystal Structure Of Insulin-Like Growth Factor 1 R		4e-04
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		4e-04
1m7n_A	322	Crystal Structure Of Unactivated Apo Insulin-Like G		4e-04
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		4e-04
3bz3_A	276	Crystal Structure Analysis Of Focal Adhesion Kinase		4e-04
2oj9_A	307	Structure Of Igf-1r Kinase Domain Complexed With A		4e-04
1k3a_A	299	Structure Of The Insulin-Like Growth Factor 1 Recep		4e-04
2j0m_B	276	Crystal Structure A Two-Chain Complex Between The F		4e-04
2etm_A	281	Crystal Structure Of Focal Adhesion Kinase Domain C		4e-04
3pxk_A	282	Focal Adhesion Kinase Catalytic Domain In Complex W		5e-04
2jkm_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		5e-04
4ebw_A	304	Structure Of Focal Adhesion Kinase Catalytic Domain		5e-04
1mp8_A	281	Crystal Structure Of Focal Adhesion Kinase (Fak) Le		5e-04
4g31_A	299	Crystal Structure Of Gsk6414 Bound To Perk (R587-R1		5e-04
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		5e-04
3gop_A	361	Crystal Structure Of The Egf Receptor Juxtamembrane		5e-04
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		5e-04
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		5e-04
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		5e-04
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		5e-04
3ot3_A	273	X-Ray Crystal Structure Of Compound 22k Bound To Hu		6e-04
4fsw_A	279	Crystal Structure Of The Chk1 Length = 279		6e-04
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		6e-04
2x8e_A	276	Discovery Of A Novel Class Of Triazolones As Checkp		6e-04
2ydj_A	276	Discovery Of Checkpoint Kinase Inhibitor Azd7762 By		6e-04
4fst_A	269	Crystal Structure Of The Chk1 Length = 269		6e-04
4fsn_A	278	Crystal Structure Of The Chk1 Length = 278		6e-04
2e9v_A	268	Structure Of H-Chk1 Complexed With A859017 Length =		6e-04
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		6e-04
4ft3_A	279	Crystal Structure Of The Chk1 Length = 279		7e-04
4fsz_A	279	Crystal Structure Of The Chk1 Length = 279		7e-04
2ghg_A	269	H-Chk1 Complexed With A431994 Length = 269		7e-04
4fsm_A	279	Crystal Structure Of The Chk1 Length = 279		7e-04
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		7e-04
3jvr_A	271	Characterization Of The Chk1 Allosteric Inhibitor B		7e-04
4fsu_A	279	Crystal Structure Of The Chk1 Length = 279		7e-04
2ayp_A	269	Crystal Structure Of Chk1 With An Indol Inhibitor L		7e-04
3eta_A	317	Kinase Domain Of Insulin Receptor Complexed With A		7e-04
2j0l_A	276	Crystal Structure Of A The Active Conformation Of T		7e-04
4fsy_A	279	Crystal Structure Of The Chk1 Length = 279		7e-04
2q0b_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		7e-04
3d94_A	301	Crystal Structure Of The Insulin-Like Growth Factor		8e-04
3qqu_A	301	Cocrystal Structure Of Unphosphorylated Igf With Py		8e-04
2jkk_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		8e-04
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		8e-04
2br1_A	297	Structure-Based Design Of Novel Chk1 Inhibitors: In		8e-04
1ia8_A	289	The 1.7 A Crystal Structure Of Human Cell Cycle Che		8e-04
1zlt_A	295	Crystal Structure Of Chk1 Complexed With A Hymenald		8e-04
2hog_A	322	Crystal Structure Of Chek1 In Complex With Inhibito		8e-04
2r0u_A	323	Crystal Structure Of Chek1 In Complex With Inhibito		8e-04

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 98.2 bits (243), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 135/284 (47%), Gaps = 16/284 (5%)
Query: 61  FSAKELEIATNNYDERKFIKQDSTYKLYKGFWQE-RLISVMKYNESYSDSACKFSINNIV 119
           FS +EL++A++N+  +  + +    K+YKG   +  L++V +  E  +          + 
Sbjct: 20  FSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQFQTEVE 79
Query: 120 YAAQMDHKHILKLIGCCLETPIPILVFEY---GEYTT-LRDRIFGAPQPHFEPLLLKHRL 175
             +   H+++L+L G C+     +LV+ Y   G   + LR+R    P     PL    R 
Sbjct: 80  MISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQP-----PLDWPKRQ 134
Query: 176 KVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITR 235
           ++A+G A  LAYLH      I+  ++ +  IL +EE  A + DF  +  +   + H+   
Sbjct: 135 RIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXA 194
Query: 236 SRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR-THGSVRHLIEYLK 294
            R G   + APEY   G  +EK DV+ +  +LLEL+TGQ   DL R  +     L++++K
Sbjct: 195 VR-GXIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVK 253
Query: 295 NYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP 338
             L+  +   + D     DL     + + +   ++ L C   SP
Sbjct: 254 GLLKEKKLEALVDV----DLQGNYKDEEVEQLIQVALLCTQSSP 293

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 97.8 bits (242), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 133/284 (46%), Gaps = 16/284 (5%)
Query: 61  FSAKELEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVY 120
           FS +EL++A++N+  +  + +    K+YKG   +  +  +K  +       +      V 
Sbjct: 28  FSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQTEVE 87
Query: 121 AAQMD-HKHILKLIGCCLETPIPILVFEY---GEYTT-LRDRIFGAPQPHFEPLLLKHRL 175
              M  H+++L+L G C+     +LV+ Y   G   + LR+R    P     PL    R 
Sbjct: 88  MISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQP-----PLDWPKRQ 142
Query: 176 KVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITR 235
           ++A+G A  LAYLH      I+  ++ +  IL +EE  A + DF  +  +   + H+   
Sbjct: 143 RIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXA 202
Query: 236 SRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR-THGSVRHLIEYLK 294
            R G   + APEY   G  +EK DV+ +  +LLEL+TGQ   DL R  +     L++++K
Sbjct: 203 VR-GTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVK 261
Query: 295 NYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP 338
             L+  +   + D     DL     + + +   ++ L C   SP
Sbjct: 262 GLLKEKKLEALVDV----DLQGNYKDEEVEQLIQVALLCTQSSP 301

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 97.8 bits (242), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 118/247 (47%), Gaps = 11/247 (4%)
Query: 65  ELEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQM 124
           +LE ATNN+D +  I      K+YKG  ++     +K     S    +     I   +  
Sbjct: 33  DLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFC 92
Query: 125 DHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHA 184
            H H++ LIG C E    IL+++Y E   L+  ++G+  P    +  + RL++ +G A  
Sbjct: 93  RHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMS-MSWEQRLEICIGAARG 151
Query: 185 LAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE-GETHIITRSRFGAWTY 243
           L YLH    R I+  ++ S+ IL +E  V K+ DF  S    E G+TH+    + G   Y
Sbjct: 152 LHYLHT---RAIIHRDVKSINILLDENFVPKITDFGISKKGTELGQTHLXXVVK-GTLGY 207
Query: 244 SAPEYKRGGVFNEKLDVYTFSTVLLELLTGQST--RDLLRTHGSVRHLIEYLKNYLQNNR 301
             PEY   G   EK DVY+F  VL E+L  +S   + L R    + +L E+      N +
Sbjct: 208 IDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPR---EMVNLAEWAVESHNNGQ 264
Query: 302 FTEIADP 308
             +I DP
Sbjct: 265 LEQIVDP 271

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 94.4 bits (233), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 117/247 (47%), Gaps = 11/247 (4%)
Query: 65  ELEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQM 124
           +LE ATNN+D +  I      K+YKG  ++     +K     S    +     I   +  
Sbjct: 33  DLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFC 92
Query: 125 DHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHA 184
            H H++ LIG C E    IL+++Y E   L+  ++G+  P    +  + RL++ +G A  
Sbjct: 93  RHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMS-MSWEQRLEICIGAARG 151
Query: 185 LAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE-GETHIITRSRFGAWTY 243
           L YLH    R I+  ++ S+ IL +E  V K+ DF  S    E  +TH+    + G   Y
Sbjct: 152 LHYLHT---RAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLXXVVK-GTLGY 207
Query: 244 SAPEYKRGGVFNEKLDVYTFSTVLLELLTGQST--RDLLRTHGSVRHLIEYLKNYLQNNR 301
             PEY   G   EK DVY+F  VL E+L  +S   + L R    + +L E+      N +
Sbjct: 208 IDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPR---EMVNLAEWAVESHNNGQ 264
Query: 302 FTEIADP 308
             +I DP
Sbjct: 265 LEQIVDP 271

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 104/233 (44%), Gaps = 21/233 (9%)
Query: 58  YRIFSAKELEIATNNYDERKF------IKQDSTYKLYKGFWQERLISVMKYNESYSDSAC 111
           +  FS  EL+  TNN+DER        + +     +YKG+     ++V K       +  
Sbjct: 6   FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTE 65
Query: 112 KFS---INNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIF---GAPQPH 165
           +        I   A+  H+++++L+G   +     LV+ Y    +L DR+    G P   
Sbjct: 66  ELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTP--- 122
Query: 166 FEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI 225
             PL    R K+A G A+ + +LH       +  ++ S  IL +E   AK+ DF  + + 
Sbjct: 123 --PLSWHMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARAS 177
Query: 226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRD 278
            +    ++     G   Y APE  RG +   K D+Y+F  VLLE++TG    D
Sbjct: 178 EKFAQXVMXXRIVGTTAYMAPEALRGEI-TPKSDIYSFGVVLLEIITGLPAVD 229

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 21/228 (9%)
Query: 58  YRIFSAKELEIATNNYDERKF------IKQDSTYKLYKGFWQERLISVMKYNESYSDSAC 111
           +  FS  EL+  TNN+DER        + +     +YKG+     ++V K       +  
Sbjct: 12  FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTE 71
Query: 112 KFS---INNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIF---GAPQPH 165
           +        I   A+  H+++++L+G   +     LV+ Y    +L DR+    G P   
Sbjct: 72  ELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTP--- 128
Query: 166 FEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI 225
             PL    R K+A G A+ + +LH       +  ++ S  IL +E   AK+ DF  + + 
Sbjct: 129 --PLSWHMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARAS 183
Query: 226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTG 273
            +    ++     G   Y APE  RG +   K D+Y+F  VLLE++TG
Sbjct: 184 EKFAQTVMXSRIVGTTAYMAPEALRGEI-TPKSDIYSFGVVLLEIITG 230

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 21/228 (9%)
Query: 58  YRIFSAKELEIATNNYDERKF------IKQDSTYKLYKGFWQERLISVMKYNESYSDSAC 111
           +  FS  EL+  TNN+DER        + +     +YKG+     ++V K       +  
Sbjct: 12  FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTE 71
Query: 112 KFS---INNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIF---GAPQPH 165
           +        I   A+  H+++++L+G   +     LV+ Y    +L DR+    G P   
Sbjct: 72  ELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTP--- 128
Query: 166 FEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI 225
             PL    R K+A G A+ + +LH       +  ++ S  IL +E   AK+ DF  + + 
Sbjct: 129 --PLSWHMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARAS 183
Query: 226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTG 273
            +    ++     G   Y APE  RG +   K D+Y+F  VLLE++TG
Sbjct: 184 EKFAQTVMXXRIVGTTAYMAPEALRGEI-TPKSDIYSFGVVLLEIITG 230

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 21/228 (9%)
Query: 58  YRIFSAKELEIATNNYDERKF------IKQDSTYKLYKGFWQERLISVMKYNESYSDSAC 111
           +  FS  EL+  TNN+DER          +     +YKG+     ++V K       +  
Sbjct: 3   FHSFSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTE 62
Query: 112 KFS---INNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIF---GAPQPH 165
           +        I   A+  H+++++L+G   +     LV+ Y    +L DR+    G P   
Sbjct: 63  ELKQQFDQEIKVXAKCQHENLVELLGFSSDGDDLCLVYVYXPNGSLLDRLSCLDGTP--- 119
Query: 166 FEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI 225
             PL    R K+A G A+ + +LH       +  ++ S  IL +E   AK+ DF  + + 
Sbjct: 120 --PLSWHXRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARAS 174
Query: 226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTG 273
            +    +      G   Y APE  RG +   K D+Y+F  VLLE++TG
Sbjct: 175 EKFAQXVXXSRIVGTTAYXAPEALRGEI-TPKSDIYSFGVVLLEIITG 221

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 24/210 (11%)
Query: 89  KGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY 148
           K  W+ + +++ +     S+S  K  I  +   ++++H +I+KL G CL  P+  LV EY
Sbjct: 27  KAKWRAKDVAIKQIE---SESERKAFIVELRQLSRVNHPNIVKLYGACL-NPV-CLVMEY 81
Query: 149 GEYTTLRDRIFGA-PQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISL-CI 206
            E  +L + + GA P P++      H +   +  +  +AYLH   P+ ++  +L     +
Sbjct: 82  AEGGSLYNVLHGAEPLPYY---TAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLL 138
Query: 207 LFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTV 266
           L     V K+ DF  +  I   +TH+       AW   APE   G  ++EK DV+++  +
Sbjct: 139 LVAGGTVLKICDFGTACDI---QTHMTNNKGSAAWM--APEVFEGSNYSEKCDVFSWGII 193
Query: 267 LLELLT---------GQSTRDLLRTHGSVR 287
           L E++T         G + R +   H   R
Sbjct: 194 LWEVITRRKPFDEIGGPAFRIMWAVHNGTR 223

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 24/210 (11%)
Query: 89  KGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY 148
           K  W+ + +++ +     S+S  K  I  +   ++++H +I+KL G CL  P+  LV EY
Sbjct: 26  KAKWRAKDVAIKQIE---SESERKAFIVELRQLSRVNHPNIVKLYGACL-NPV-CLVMEY 80
Query: 149 GEYTTLRDRIFGA-PQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISL-CI 206
            E  +L + + GA P P++      H +   +  +  +AYLH   P+ ++  +L     +
Sbjct: 81  AEGGSLYNVLHGAEPLPYY---TAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLL 137
Query: 207 LFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTV 266
           L     V K+ DF  +  I   +TH+       AW   APE   G  ++EK DV+++  +
Sbjct: 138 LVAGGTVLKICDFGTACDI---QTHMTNNKGSAAWM--APEVFEGSNYSEKCDVFSWGII 192
Query: 267 LLELLT---------GQSTRDLLRTHGSVR 287
           L E++T         G + R +   H   R
Sbjct: 193 LWEVITRRKPFDEIGGPAFRIMWAVHNGTR 222

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 95/202 (47%), Gaps = 25/202 (12%)
Query: 86  KLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQM----DHKHILKLIGCCLETPI 141
           K+Y+ FW    ++V K      D     +I N+   A++     H +I+ L G CL+ P 
Sbjct: 22  KVYRAFWIGDEVAV-KAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPN 80
Query: 142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNL 201
             LV E+     L   + G   P   P +L   +  A+ IA  + YLH     PI+  +L
Sbjct: 81  LCLVMEFARGGPLNRVLSGKRIP---PDIL---VNWAVQIARGMNYLHDEAIVPIIHRDL 134
Query: 202 IS--LCILFNEEN------VAKLFDFSESISIPEGETHIITR-SRFGAWTYSAPEYKRGG 252
            S  + IL   EN      + K+ DF  +      E H  T+ S  GA+ + APE  R  
Sbjct: 135 KSSNILILQKVENGDLSNKILKITDFGLA-----REWHRTTKMSAAGAYAWMAPEVIRAS 189
Query: 253 VFNEKLDVYTFSTVLLELLTGQ 274
           +F++  DV+++  +L ELLTG+
Sbjct: 190 MFSKGSDVWSYGVLLWELLTGE 211

>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant Length = 311

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 15/160 (9%)
Query: 121 AAQMDHKHILKLIGCC-LETP---IPILVFEYGEYTTLRDRIFGAPQPHFE-PLLLKHRL 175
           AA ++H  I+ +      ETP   +P +V EY +  TLRD +      H E P+  K  +
Sbjct: 66  AAALNHPAIVAVYATGEAETPAGPLPYIVMEYVDGVTLRDIV------HTEGPMTPKRAI 119
Query: 176 KVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE-GETHIIT 234
           +V      AL + H      I+  ++    I+ +  N  K+ DF  + +I + G +   T
Sbjct: 120 EVIADACQALNFSHQNG---IIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQT 176
Query: 235 RSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
            +  G   Y +PE  RG   + + DVY+   VL E+LTG+
Sbjct: 177 AAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGE 216

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 12/218 (5%)
Query: 61  FSAKELEIATNNYDERKFIKQDSTYKLYKGFWQ--ERLISVMKYNESYSDSACKFSINNI 118
               +++I   + + ++ I   S   +++  W   +  + ++   + +++   +F +  +
Sbjct: 27  MDGDDMDIPWCDLNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEF-LREV 85
Query: 119 VYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIF--GAPQPHFEPLLLKHRLK 176
               ++ H +I+  +G   + P   +V EY    +L   +   GA     E L  + RL 
Sbjct: 86  AIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGA----REQLDERRRLS 141
Query: 177 VAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRS 236
           +A  +A  + YLH   P PIV  NL S  +L +++   K+ DF   +S  +  T + ++S
Sbjct: 142 MAYDVAKGMNYLHNRNP-PIVHRNLKSPNLLVDKKYTVKVCDFG--LSRLKASTFLSSKS 198
Query: 237 RFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
             G   + APE  R    NEK DVY+F  +L EL T Q
Sbjct: 199 AAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQ 236

>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 15/160 (9%)
Query: 121 AAQMDHKHILKLIGCC-LETP---IPILVFEYGEYTTLRDRIFGAPQPHFE-PLLLKHRL 175
           AA ++H  I+ +      ETP   +P +V EY +  TLRD +      H E P+  K  +
Sbjct: 66  AAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIV------HTEGPMTPKRAI 119
Query: 176 KVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE-GETHIIT 234
           +V      AL + H      I+  ++    I+ +  N  K+ DF  + +I + G +   T
Sbjct: 120 EVIADACQALNFSHQNG---IIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQT 176
Query: 235 RSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
            +  G   Y +PE  RG   + + DVY+   VL E+LTG+
Sbjct: 177 AAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGE 216

>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb Mutant Kinase Domain In Complex With Kt5720 Length = 311

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 15/160 (9%)
Query: 121 AAQMDHKHILKLIGCC-LETP---IPILVFEYGEYTTLRDRIFGAPQPHFE-PLLLKHRL 175
           AA ++H  I+ +      ETP   +P +V EY +  TLRD +      H E P+  K  +
Sbjct: 66  AAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIV------HTEGPMTPKRAI 119
Query: 176 KVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE-GETHIIT 234
           +V      AL + H      I+  ++    IL +  N  K+ DF  + +I + G +   T
Sbjct: 120 EVIADACQALNFSHQNG---IIHRDVKPANILISATNAVKVVDFGIARAIADSGNSVXQT 176
Query: 235 RSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
            +  G   Y +PE  RG   + + DVY+   VL E+LTG+
Sbjct: 177 AAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGE 216

>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 15/160 (9%)
Query: 121 AAQMDHKHILKLIGCC-LETP---IPILVFEYGEYTTLRDRIFGAPQPHFE-PLLLKHRL 175
           AA ++H  I+ +      ETP   +P +V EY +  TLRD +      H E P+  K  +
Sbjct: 66  AAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIV------HTEGPMTPKRAI 119
Query: 176 KVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE-GETHIIT 234
           +V      AL + H      I+  ++    I+ +  N  K+ DF  + +I + G +   T
Sbjct: 120 EVIADACQALNFSHQNG---IIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQT 176
Query: 235 RSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
            +  G   Y +PE  RG   + + DVY+   VL E+LTG+
Sbjct: 177 AAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGE 216

>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycobacterium Tuberculosis Pknb. Length = 311

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 15/160 (9%)
Query: 121 AAQMDHKHILKLIGCC-LETP---IPILVFEYGEYTTLRDRIFGAPQPHFE-PLLLKHRL 175
           AA ++H  I+ +      ETP   +P +V EY +  TLRD +      H E P+  K  +
Sbjct: 66  AAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIV------HTEGPMTPKRAI 119
Query: 176 KVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE-GETHIIT 234
           +V      AL + H      I+  ++    I+ +  N  K+ DF  + +I + G +   T
Sbjct: 120 EVIADACQALNFSHQNG---IIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQT 176
Query: 235 RSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
            +  G   Y +PE  RG   + + DVY+   VL E+LTG+
Sbjct: 177 AAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGE 216

>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium Tuberculosis Length = 299

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 15/160 (9%)
Query: 121 AAQMDHKHILKLIGCC-LETP---IPILVFEYGEYTTLRDRIFGAPQPHFE-PLLLKHRL 175
           AA ++H  I+ +      ETP   +P +V EY +  TLRD +      H E P+  K  +
Sbjct: 83  AAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIV------HTEGPMTPKRAI 136
Query: 176 KVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE-GETHIIT 234
           +V   IA A   L+      I+  ++    I+ +  N  K+ DF  + +I + G +   T
Sbjct: 137 EV---IADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQT 193
Query: 235 RSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
            +  G   Y +PE  RG   + + DVY+   VL E+LTG+
Sbjct: 194 AAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGE 233

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 100/218 (45%), Gaps = 12/218 (5%)
Query: 61  FSAKELEIATNNYDERKFIKQDSTYKLYKGFWQ--ERLISVMKYNESYSDSACKFSINNI 118
               +++I   + + ++ I   S   +++  W   +  + ++   + +++   +F +  +
Sbjct: 27  MDGDDMDIPWCDLNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEF-LREV 85
Query: 119 VYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIF--GAPQPHFEPLLLKHRLK 176
               ++ H +I+  +G   + P   +V EY    +L   +   GA     E L  + RL 
Sbjct: 86  AIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGA----REQLDERRRLS 141
Query: 177 VAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRS 236
           +A  +A  + YLH   P PIV  +L S  +L +++   K+ DF   +S  +    + ++ 
Sbjct: 142 MAYDVAKGMNYLHNRNP-PIVHRDLKSPNLLVDKKYTVKVCDFG--LSRLKASXFLXSKX 198
Query: 237 RFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
             G   + APE  R    NEK DVY+F  +L EL T Q
Sbjct: 199 AAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQ 236

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 12/150 (8%)
Query: 126 HKHILKLIGCCLETPIPIL--VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAH 183
           H+HI+K  GCC +     L  V EY    +LRD +   P+     + L   L  A  I  
Sbjct: 75  HEHIIKYKGCCEDQGEKSLQLVMEYVPLGSLRDYL---PR---HSIGLAQLLLFAQQICE 128
Query: 184 ALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWT- 242
            +AYLH    +  +  NL +  +L + + + K+ DF  + ++PEG  +   R    +   
Sbjct: 129 GMAYLHA---QHYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVF 185
Query: 243 YSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           + APE  +   F    DV++F   L ELLT
Sbjct: 186 WYAPECLKEYKFYYASDVWSFGVTLYELLT 215

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 12/150 (8%)
Query: 126 HKHILKLIGCCLETPIPI--LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAH 183
           H+HI+K  GCC +       LV EY    +LRD +   P+     + L   L  A  I  
Sbjct: 92  HEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYL---PR---HSIGLAQLLLFAQQICE 145
Query: 184 ALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG-ETHIITRSRFGAWT 242
            +AYLH    +  +  +L +  +L + + + K+ DF  + ++PEG E + +         
Sbjct: 146 GMAYLHA---QHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEXYRVREDGDSPVF 202
Query: 243 YSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           + APE  +   F    DV++F   L ELLT
Sbjct: 203 WYAPECLKEYKFYYASDVWSFGVTLYELLT 232

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 12/150 (8%)
Query: 126 HKHILKLIGCCLETPIPIL--VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAH 183
           H+HI+K  GCC +     L  V EY    +LRD +   P+     + L   L  A  I  
Sbjct: 75  HEHIIKYKGCCEDQGEKSLQLVMEYVPLGSLRDYL---PR---HSIGLAQLLLFAQQICE 128
Query: 184 ALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWT- 242
            +AYLH    +  +  NL +  +L + + + K+ DF  + ++PEG  +   R    +   
Sbjct: 129 GMAYLHS---QHYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVF 185
Query: 243 YSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           + APE  +   F    DV++F   L ELLT
Sbjct: 186 WYAPECLKEYKFYYASDVWSFGVTLYELLT 215

>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 14/185 (7%)
Query: 126 HKHILKLIGCCLETPIPI--LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAH 183
           H+HI+K  GCC +       LV EY    +LRD +        + LL   ++   M   H
Sbjct: 69  HEHIVKYKGCCEDQGEKSVQLVMEYVPLGSLRDYLPRHCVGLAQLLLFAQQICEGMAYLH 128
Query: 184 ALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWT- 242
           A  Y+H    R +   N     +L + + + K+ DF  + ++PEG  +   R    +   
Sbjct: 129 AQHYIH----RALAARN-----VLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVF 179
Query: 243 YSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRF 302
           + APE  +   F    DV++F   L ELLT   +      H     LI + +  +   R 
Sbjct: 180 WYAPECLKECKFYYASDVWSFGVTLYELLTYCDSNQ--SPHTKFTELIGHTQGQMTVLRL 237
Query: 303 TEIAD 307
           TE+ +
Sbjct: 238 TELLE 242

>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 14/185 (7%)
Query: 126 HKHILKLIGCCLETPIPI--LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAH 183
           H+HI+K  GCC +       LV EY    +LRD +        + LL   ++   M   H
Sbjct: 70  HEHIVKYKGCCEDQGEKSVQLVMEYVPLGSLRDYLPRHCVGLAQLLLFAQQICEGMAYLH 129
Query: 184 ALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWT- 242
           A  Y+H    R +   N     +L + + + K+ DF  + ++PEG  +   R    +   
Sbjct: 130 AQHYIH----RALAARN-----VLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVF 180
Query: 243 YSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRF 302
           + APE  +   F    DV++F   L ELLT   +      H     LI + +  +   R 
Sbjct: 181 WYAPECLKECKFYYASDVWSFGVTLYELLTYCDSNQ--SPHTKFTELIGHTQGQMTVLRL 238
Query: 303 TEIAD 307
           TE+ +
Sbjct: 239 TELLE 243

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 90/216 (41%), Gaps = 11/216 (5%)
Query: 62  SAKELEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYA 121
           S+ + EI        + I   S   +YKG W   +   M    + +    +   N +   
Sbjct: 15  SSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVL 74
Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
            +  H +IL  +G   +  + I V ++ E ++L   +  A +  FE   +K  + +A   
Sbjct: 75  RKTRHVNILLFMGYSTKPQLAI-VTQWCEGSSLYHHLH-ASETKFE---MKKLIDIARQT 129
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAW 241
           A  + YLH    + I+  +L S  I  +E+N  K+ DF  +                G+ 
Sbjct: 130 ARGMDYLHA---KSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSI 186
Query: 242 TYSAPEYKR---GGVFNEKLDVYTFSTVLLELLTGQ 274
            + APE  R      ++ + DVY F  VL EL+TGQ
Sbjct: 187 LWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQ 222

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 94/217 (43%), Gaps = 17/217 (7%)
Query: 66  LEIATNNYDERKFIKQDSTYK----------LYKGFWQERLISVMKYNESYSDSACKFSI 115
           ++ ++ NYD+ +  + D T K          +Y+G W++  ++V            +  +
Sbjct: 3   MDPSSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFL 62
Query: 116 NNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRL 175
                  ++ H ++++L+G C   P   ++ E+  Y  L D +    +     ++L   L
Sbjct: 63  KEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVL---L 119
Query: 176 KVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITR 235
            +A  I+ A+ YL     +  +  +L +   L  E ++ K+ DF  S  +  G+T+    
Sbjct: 120 YMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHA 175
Query: 236 SRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
                  ++APE      F+ K DV+ F  +L E+ T
Sbjct: 176 GAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 212

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 11/155 (7%)
Query: 121 AAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMG 180
           ++Q+ H++I+ +I    E     LV EY E  TL + I    + H  PL +   +     
Sbjct: 65  SSQLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYI----ESHG-PLSVDTAINFTNQ 119
Query: 181 IAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHII-TRSRFG 239
           I   + + H      IV  ++    IL +     K+FDF   I+    ET +  T    G
Sbjct: 120 ILDGIKHAH---DMRIVHRDIKPQNILIDSNKTLKIFDFG--IAKALSETSLTQTNHVLG 174
Query: 240 AWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
              Y +PE  +G   +E  D+Y+   VL E+L G+
Sbjct: 175 TVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGE 209

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 90/211 (42%), Gaps = 17/211 (8%)
Query: 72  NYDERKFIKQDSTYK----------LYKGFWQERLISVMKYNESYSDSACKFSINNIVYA 121
           NYD+ +  + D T K          +Y+G W++  ++V            +  +      
Sbjct: 211 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVM 270
Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
            ++ H ++++L+G C   P   ++ E+  Y  L D +    +     ++L   L +A  I
Sbjct: 271 KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVL---LYMATQI 327
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAW 241
           + A+ YL     +  +  NL +   L  E ++ K+ DF  S  +  G+T+          
Sbjct: 328 SSAMEYLE---KKNFIHRNLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAKFPI 383
Query: 242 TYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            ++APE      F+ K DV+ F  +L E+ T
Sbjct: 384 KWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 414

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 89/216 (41%), Gaps = 11/216 (5%)
Query: 62  SAKELEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYA 121
           +A + EI        + I   S   +YKG W   +   M    + +    +   N +   
Sbjct: 15  AADDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVL 74
Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
            +  H +IL  +G     P   +V ++ E ++L   +  A +  FE   +K  + +A   
Sbjct: 75  RKTRHVNILLFMGYST-APQLAIVTQWCEGSSLYHHLH-ASETKFE---MKKLIDIARQT 129
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAW 241
           A  + YLH    + I+  +L S  I  +E+N  K+ DF  +                G+ 
Sbjct: 130 ARGMDYLHA---KSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSI 186
Query: 242 TYSAPEYKR---GGVFNEKLDVYTFSTVLLELLTGQ 274
            + APE  R      ++ + DVY F  VL EL+TGQ
Sbjct: 187 LWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQ 222

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 90/211 (42%), Gaps = 17/211 (8%)
Query: 72  NYDERKFIKQDSTYK----------LYKGFWQERLISVMKYNESYSDSACKFSINNIVYA 121
           NYD+ +  + D T K          +Y+G W++  ++V            +  +      
Sbjct: 250 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVM 309
Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
            ++ H ++++L+G C   P   ++ E+  Y  L D +    +     ++L   L +A  I
Sbjct: 310 KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVL---LYMATQI 366
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAW 241
           + A+ YL     +  +  NL +   L  E ++ K+ DF  S  +  G+T+          
Sbjct: 367 SSAMEYLE---KKNFIHRNLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAKFPI 422
Query: 242 TYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            ++APE      F+ K DV+ F  +L E+ T
Sbjct: 423 KWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 453

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 90/216 (41%), Gaps = 11/216 (5%)
Query: 62  SAKELEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYA 121
           S+ + EI        + I   S   +YKG W   +   M    + +    +   N +   
Sbjct: 3   SSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVL 62
Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
            +  H +IL  +G   +  + I V ++ E ++L   +  A +  FE   +K  + +A   
Sbjct: 63  RKTRHVNILLFMGYSTKPQLAI-VTQWCEGSSLYHHLH-ASETKFE---MKKLIDIARQT 117
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAW 241
           A  + YLH    + I+  +L S  I  +E+N  K+ DF  +                G+ 
Sbjct: 118 ARGMDYLHA---KSIIHRDLKSNNIFLHEDNTVKIGDFGLATVKSRWSGSHQFEQLSGSI 174
Query: 242 TYSAPEYKR---GGVFNEKLDVYTFSTVLLELLTGQ 274
            + APE  R      ++ + DVY F  VL EL+TGQ
Sbjct: 175 LWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQ 210

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 91/214 (42%), Gaps = 17/214 (7%)
Query: 69  ATNNYDERKFIKQDSTYK----------LYKGFWQERLISVMKYNESYSDSACKFSINNI 118
            + NYD+ +  + D T K          +Y+G W++  ++V            +  +   
Sbjct: 1   GSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEA 60
Query: 119 VYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVA 178
               ++ H ++++L+G C   P   ++ E+  Y  L D +    +     ++L   L +A
Sbjct: 61  AVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVL---LYMA 117
Query: 179 MGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRF 238
             I+ A+ YL     +  +  +L +   L  E ++ K+ DF  S  +  G+T+       
Sbjct: 118 TQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAK 173
Query: 239 GAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
               ++APE      F+ K DV+ F  +L E+ T
Sbjct: 174 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 207

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 91/214 (42%), Gaps = 17/214 (7%)
Query: 69  ATNNYDERKFIKQDSTYK----------LYKGFWQERLISVMKYNESYSDSACKFSINNI 118
            + NYD+ +  + D T K          +Y+G W++  ++V            +  +   
Sbjct: 1   GSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEA 60
Query: 119 VYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVA 178
               ++ H ++++L+G C   P   ++ E+  Y  L D +    +     ++L   L +A
Sbjct: 61  AVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVL---LYMA 117
Query: 179 MGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRF 238
             I+ A+ YL     +  +  +L +   L  E ++ K+ DF  S  +  G+T+       
Sbjct: 118 TQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAK 173
Query: 239 GAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
               ++APE      F+ K DV+ F  +L E+ T
Sbjct: 174 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 207

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 94/217 (43%), Gaps = 17/217 (7%)
Query: 66  LEIATNNYDERKFIKQDSTYK----------LYKGFWQERLISVMKYNESYSDSACKFSI 115
           ++ ++ NYD+ +  + D T K          +Y+G W++  ++V            +  +
Sbjct: 3   MDPSSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFL 62
Query: 116 NNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRL 175
                  ++ H ++++L+G C   P   ++ E+  Y  L D +    +     ++L   L
Sbjct: 63  KEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVL---L 119
Query: 176 KVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITR 235
            +A  I+ A+ YL     +  +  +L +   L  E ++ K+ DF  S  +  G+T+    
Sbjct: 120 YMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHA 175
Query: 236 SRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
                  ++APE      F+ K DV+ F  +L E+ T
Sbjct: 176 GAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 212

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 94/217 (43%), Gaps = 17/217 (7%)
Query: 66  LEIATNNYDERKFIKQDSTYK----------LYKGFWQERLISVMKYNESYSDSACKFSI 115
           ++ ++ NYD+ +  + D T K          +Y+G W++  ++V            +  +
Sbjct: 3   MDPSSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFL 62
Query: 116 NNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRL 175
                  ++ H ++++L+G C   P   ++ E+  Y  L D +    +     ++L   L
Sbjct: 63  KEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVL---L 119
Query: 176 KVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITR 235
            +A  I+ A+ YL     +  +  +L +   L  E ++ K+ DF  S  +  G+T+    
Sbjct: 120 YMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHA 175
Query: 236 SRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
                  ++APE      F+ K DV+ F  +L E+ T
Sbjct: 176 GAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 212

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 94/217 (43%), Gaps = 17/217 (7%)
Query: 66  LEIATNNYDERKFIKQDSTYK----------LYKGFWQERLISVMKYNESYSDSACKFSI 115
           ++ ++ NYD+ +  + D T K          +Y+G W++  ++V            +  +
Sbjct: 3   MDPSSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFL 62
Query: 116 NNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRL 175
                  ++ H ++++L+G C   P   ++ E+  Y  L D +    +     ++L   L
Sbjct: 63  KEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVL---L 119
Query: 176 KVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITR 235
            +A  I+ A+ YL     +  +  +L +   L  E ++ K+ DF  S  +  G+T+    
Sbjct: 120 YMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHA 175
Query: 236 SRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
                  ++APE      F+ K DV+ F  +L E+ T
Sbjct: 176 GAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 212

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 90/211 (42%), Gaps = 17/211 (8%)
Query: 72  NYDERKFIKQDSTYK----------LYKGFWQERLISVMKYNESYSDSACKFSINNIVYA 121
           NYD+ +  + D T K          +Y+G W++  ++V            +  +      
Sbjct: 6   NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVM 65
Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
            ++ H ++++L+G C   P   ++ E+  Y  L D +    +     ++L   L +A  I
Sbjct: 66  KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVL---LYMATQI 122
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAW 241
           + A+ YL     +  +  +L +   L  E ++ K+ DF  S  +  G+T+          
Sbjct: 123 SSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAPAGAKFPI 178
Query: 242 TYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            ++APE      F+ K DV+ F  +L E+ T
Sbjct: 179 KWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 209

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 90/211 (42%), Gaps = 17/211 (8%)
Query: 72  NYDERKFIKQDSTYK----------LYKGFWQERLISVMKYNESYSDSACKFSINNIVYA 121
           NYD+ +  + D T K          +Y+G W++  ++V            +  +      
Sbjct: 5   NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVM 64
Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
            ++ H ++++L+G C   P   ++ E+  Y  L D +    +     ++L   L +A  I
Sbjct: 65  KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVL---LYMATQI 121
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAW 241
           + A+ YL     +  +  +L +   L  E ++ K+ DF  S  +  G+T+          
Sbjct: 122 SSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAPAGAKFPI 177
Query: 242 TYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            ++APE      F+ K DV+ F  +L E+ T
Sbjct: 178 KWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 208

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 91/214 (42%), Gaps = 17/214 (7%)
Query: 69  ATNNYDERKFIKQDSTYK----------LYKGFWQERLISVMKYNESYSDSACKFSINNI 118
            + NYD+ +  + D T K          +Y+G W++  ++V            +  +   
Sbjct: 1   GSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEA 60
Query: 119 VYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVA 178
               ++ H ++++L+G C   P   ++ E+  Y  L D +    +     ++L   L +A
Sbjct: 61  AVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVL---LYMA 117
Query: 179 MGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRF 238
             I+ A+ YL     +  +  +L +   L  E ++ K+ DF  S  +  G+T+       
Sbjct: 118 TQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAK 173
Query: 239 GAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
               ++APE      F+ K DV+ F  +L E+ T
Sbjct: 174 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 207

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 91/214 (42%), Gaps = 17/214 (7%)
Query: 69  ATNNYDERKFIKQDSTYK----------LYKGFWQERLISVMKYNESYSDSACKFSINNI 118
            + NYD+ +  + D T K          +Y+G W++  ++V            +  +   
Sbjct: 14  GSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEA 73
Query: 119 VYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVA 178
               ++ H ++++L+G C   P   ++ E+  Y  L D +    +     ++L   L +A
Sbjct: 74  AVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVL---LYMA 130
Query: 179 MGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRF 238
             I+ A+ YL     +  +  +L +   L  E ++ K+ DF  S  +  G+T+       
Sbjct: 131 TQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAK 186
Query: 239 GAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
               ++APE      F+ K DV+ F  +L E+ T
Sbjct: 187 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 220

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 90/211 (42%), Gaps = 17/211 (8%)
Query: 72  NYDERKFIKQDSTYK----------LYKGFWQERLISVMKYNESYSDSACKFSINNIVYA 121
           NYD+ +  + D T K          +Y+G W++  ++V            +  +      
Sbjct: 4   NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVM 63
Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
            ++ H ++++L+G C   P   ++ E+  Y  L D +    +     ++L   L +A  I
Sbjct: 64  KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVL---LYMATQI 120
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAW 241
           + A+ YL     +  +  +L +   L  E ++ K+ DF  S  +  G+T+          
Sbjct: 121 SSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAKFPI 176
Query: 242 TYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            ++APE      F+ K DV+ F  +L E+ T
Sbjct: 177 KWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 207

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 91/214 (42%), Gaps = 17/214 (7%)
Query: 69  ATNNYDERKFIKQDSTYK----------LYKGFWQERLISVMKYNESYSDSACKFSINNI 118
            + NYD+ +  + D T K          +Y+G W++  ++V            +  +   
Sbjct: 1   GSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEA 60
Query: 119 VYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVA 178
               ++ H ++++L+G C   P   ++ E+  Y  L D +    +     ++L   L +A
Sbjct: 61  AVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVL---LYMA 117
Query: 179 MGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRF 238
             I+ A+ YL     +  +  +L +   L  E ++ K+ DF  S  +  G+T+       
Sbjct: 118 TQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAK 173
Query: 239 GAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
               ++APE      F+ K DV+ F  +L E+ T
Sbjct: 174 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 207

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 90/211 (42%), Gaps = 17/211 (8%)
Query: 72  NYDERKFIKQDSTYK----------LYKGFWQERLISVMKYNESYSDSACKFSINNIVYA 121
           NYD+ +  + D T K          +Y+G W++  ++V            +  +      
Sbjct: 6   NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVM 65
Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
            ++ H ++++L+G C   P   ++ E+  Y  L D +    +     ++L   L +A  I
Sbjct: 66  KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVL---LYMATQI 122
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAW 241
           + A+ YL     +  +  +L +   L  E ++ K+ DF  S  +  G+T+          
Sbjct: 123 SSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAKFPI 178
Query: 242 TYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            ++APE      F+ K DV+ F  +L E+ T
Sbjct: 179 KWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 209

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 90/211 (42%), Gaps = 17/211 (8%)
Query: 72  NYDERKFIKQDSTYK----------LYKGFWQERLISVMKYNESYSDSACKFSINNIVYA 121
           NYD+ +  + D T K          +Y+G W++  ++V            +  +      
Sbjct: 6   NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVM 65
Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
            ++ H ++++L+G C   P   ++ E+  Y  L D +    +     ++L   L +A  I
Sbjct: 66  KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVL---LYMATQI 122
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAW 241
           + A+ YL     +  +  +L +   L  E ++ K+ DF  S  +  G+T+          
Sbjct: 123 SSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAKFPI 178
Query: 242 TYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            ++APE      F+ K DV+ F  +L E+ T
Sbjct: 179 KWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 209

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 89/211 (42%), Gaps = 17/211 (8%)
Query: 72  NYDERKFIKQDSTYK----------LYKGFWQERLISVMKYNESYSDSACKFSINNIVYA 121
           NYD+ +  + D T K          +Y+G W++  ++V            +  +      
Sbjct: 5   NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVM 64
Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
            ++ H ++++L+G C   P   ++ E+  Y  L D +    +     ++L   L +A  I
Sbjct: 65  KEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVL---LYMATQI 121
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAW 241
           + A+ YL     +  +  +L +   L  E ++ K+ DF  S  +  G+T           
Sbjct: 122 SSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTXTAHAGAKFPI 177
Query: 242 TYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            ++APE      F+ K DV+ F  +L E+ T
Sbjct: 178 KWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 208

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 90/211 (42%), Gaps = 17/211 (8%)
Query: 72  NYDERKFIKQDSTYK----------LYKGFWQERLISVMKYNESYSDSACKFSINNIVYA 121
           NYD+ +  + D T K          +Y+G W++  ++V            +  +      
Sbjct: 8   NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVM 67
Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
            ++ H ++++L+G C   P   ++ E+  Y  L D +    +     ++L   L +A  I
Sbjct: 68  KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVL---LYMATQI 124
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAW 241
           + A+ YL     +  +  +L +   L  E ++ K+ DF  S  +  G+T+          
Sbjct: 125 SSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAKFPI 180
Query: 242 TYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            ++APE      F+ K DV+ F  +L E+ T
Sbjct: 181 KWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 211

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 93/217 (42%), Gaps = 17/217 (7%)
Query: 66  LEIATNNYDERKFIKQDSTYK----------LYKGFWQERLISVMKYNESYSDSACKFSI 115
           ++ ++ NYD+ +  + D T K          +Y+G W++  ++V            +  +
Sbjct: 3   MDPSSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFL 62
Query: 116 NNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRL 175
                  ++ H ++++L+G C   P   ++ E+  Y  L D +    +     ++L   L
Sbjct: 63  KEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVL---L 119
Query: 176 KVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITR 235
            +A  I+ A+ YL     +  +  +L +   L  E ++ K+ DF  S  +  G+T     
Sbjct: 120 YMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTXTAHA 175
Query: 236 SRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
                  ++APE      F+ K DV+ F  +L E+ T
Sbjct: 176 GAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 212

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 11/188 (5%)
Query: 93  QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYT 152
           Q++++  +K  +  SD+A K           + H+HI+K  G C+E    I+VFEY ++ 
Sbjct: 41  QDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHG 100
Query: 153 TLR--------DRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISL 204
            L         D +  A       L     L +A  IA  + YL     +  V  +L + 
Sbjct: 101 DLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYL---ASQHFVHRDLATR 157
Query: 205 CILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFS 264
             L  E  + K+ DF  S  +   + + +         +  PE      F  + DV++  
Sbjct: 158 NCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLG 217
Query: 265 TVLLELLT 272
            VL E+ T
Sbjct: 218 VVLWEIFT 225

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 90/211 (42%), Gaps = 17/211 (8%)
Query: 72  NYDERKFIKQDSTYK----------LYKGFWQERLISVMKYNESYSDSACKFSINNIVYA 121
           NYD+ +  + D T K          +Y+G W++  ++V            +  +      
Sbjct: 4   NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVM 63
Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
            ++ H ++++L+G C   P   ++ E+  Y  L D +    +     ++L   L +A  I
Sbjct: 64  KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVL---LYMATQI 120
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAW 241
           + A+ YL     +  +  +L +   L  E ++ K+ DF  S  +  G+T+          
Sbjct: 121 SSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAKFPI 176
Query: 242 TYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            ++APE      F+ K DV+ F  +L E+ T
Sbjct: 177 KWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 207

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIA 182
           Q+ H+ +++L     + PI I+  EY E  +L D +     P    L +   L +A  IA
Sbjct: 60  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFL---KTPSGIKLTINKLLDMAAQIA 115
Query: 183 HALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWT 242
             +A++     R  +  NL +  IL ++    K+ DF  +  I + E      ++F    
Sbjct: 116 EGMAFIE---ERNYIHRNLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPI-K 171
Query: 243 YSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           ++APE    G F  K DV++F  +L E++T
Sbjct: 172 WTAPEAINYGTFTIKSDVWSFGILLTEIVT 201

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 77/187 (41%), Gaps = 22/187 (11%)
Query: 124 MDHKHILKLIGCCLETPIP--ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           + H +I+K  G C         L+ EY  Y +LRD +    Q H E +     L+    I
Sbjct: 69  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTSQI 124
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG-ETHIITRSRFGA 240
              + YL     +  +  NL +  IL   EN  K+ DF  +  +P+  E + +       
Sbjct: 125 CKGMEYLGT---KRYIHRNLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESP 181
Query: 241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-----GQSTRDLLRTHGS-------VRH 288
             + APE      F+   DV++F  VL EL T          + +R  G+       V H
Sbjct: 182 IFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFH 241
Query: 289 LIEYLKN 295
           LIE LKN
Sbjct: 242 LIELLKN 248

>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor And Isoquinolinedione Inhibitor Length = 308

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/248 (20%), Positives = 97/248 (39%), Gaps = 22/248 (8%)
Query: 53  GKYNPYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQ-------ERLISVMKYNES 105
           G ++   ++   E E+A       + + Q S   +Y+G  +       E  +++   NE+
Sbjct: 1   GSFSAADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEA 60
Query: 106 YSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRD-----RIFG 160
            S       +N      + +  H+++L+G   +    +++ E      L+      R   
Sbjct: 61  ASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEM 120
Query: 161 APQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS 220
              P   P  L   +++A  IA  +AYL+       V  +L +   +  E+   K+ DF 
Sbjct: 121 ENNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFG 177
Query: 221 ESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-------G 273
            +  I E +             + +PE  + GVF    DV++F  VL E+ T       G
Sbjct: 178 MTRDIXETDXXRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQG 237
Query: 274 QSTRDLLR 281
            S   +LR
Sbjct: 238 LSNEQVLR 245

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIA 182
           Q+ H+ +++L     + PI I+  EY E  +L D +     P    L +   L +A  IA
Sbjct: 65  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFL---KTPSGIKLTINKLLDMAAQIA 120
Query: 183 HALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWT 242
             +A++     R  +  +L +  IL ++    K+ DF  +  I + E      ++F    
Sbjct: 121 EGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPI-K 176
Query: 243 YSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           ++APE    G F  K DV++F  +L E++T
Sbjct: 177 WTAPEAINYGTFTIKSDVWSFGILLTEIVT 206

>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With Peptide Substrate And Atp Analog Length = 306

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 90/228 (39%), Gaps = 15/228 (6%)
Query: 57  PYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQ-------ERLISVMKYNESYSDS 109
           P  +F   E E++       + + Q S   +Y+G  +       E  ++V   NES S  
Sbjct: 3   PSSVFVPDEWEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLR 62
Query: 110 ACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRD-----RIFGAPQP 164
                +N           H+++L+G   +    ++V E   +  L+      R      P
Sbjct: 63  ERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNP 122
Query: 165 HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS 224
              P  L+  +++A  IA  +AYL+    +  V  +L +   +   +   K+ DF  +  
Sbjct: 123 GRPPPTLQEMIQMAAEIADGMAYLNA---KKFVHRDLAARNCMVAHDFTVKIGDFGMTRD 179
Query: 225 IPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           I E +             + APE  + GVF    D+++F  VL E+ +
Sbjct: 180 IXETDXXRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITS 227

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIA 182
           Q+ H+ +++L     + PI I+  EY E  +L D +     P    L +   L +A  IA
Sbjct: 64  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFL---KTPSGIKLTINKLLDMAAQIA 119
Query: 183 HALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWT 242
             +A++     R  +  +L +  IL ++    K+ DF  +  I + E      ++F    
Sbjct: 120 EGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPI-K 175
Query: 243 YSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           ++APE    G F  K DV++F  +L E++T
Sbjct: 176 WTAPEAINYGTFTIKSDVWSFGILLTEIVT 205

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIA 182
           Q+ H+ +++L     + PI I+  EY E  +L D +     P    L +   L +A  IA
Sbjct: 64  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFL---KTPSGIKLTINKLLDMAAQIA 119
Query: 183 HALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWT 242
             +A++     R  +  +L +  IL ++    K+ DF  +  I + E      ++F    
Sbjct: 120 EGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDAEXTAREGAKFPI-K 175
Query: 243 YSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           ++APE    G F  K DV++F  +L E++T
Sbjct: 176 WTAPEAINYGTFTIKSDVWSFGILLTEIVT 205

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIA 182
           Q+ H+ +++L     + PI I+  EY E  +L D +     P    L +   L +A  IA
Sbjct: 66  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFL---KTPSGIKLTINKLLDMAAQIA 121
Query: 183 HALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWT 242
             +A++     R  +  +L +  IL ++    K+ DF  +  I + E      ++F    
Sbjct: 122 EGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPI-K 177
Query: 243 YSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           ++APE    G F  K DV++F  +L E++T
Sbjct: 178 WTAPEAINYGTFTIKSDVWSFGILLTEIVT 207

>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1 Length = 304

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 22/241 (9%)
Query: 60  IFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQ-------ERLISVMKYNESYSDSACK 112
           ++   E E+A       + + Q S   +Y+G  +       E  +++   NE+ S     
Sbjct: 4   VYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERI 63
Query: 113 FSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRD-----RIFGAPQPHFE 167
             +N      + +  H+++L+G   +    +++ E      L+      R   A  P   
Sbjct: 64  EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLA 123
Query: 168 PLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE 227
           P  L   +++A  IA  +AYL+       V  +L +   +  E+   K+ DF  +  I E
Sbjct: 124 PPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYE 180
Query: 228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-------GQSTRDLL 280
            + +           + +PE  + GVF    DV++F  VL E+ T       G S   +L
Sbjct: 181 TDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVL 240
Query: 281 R 281
           R
Sbjct: 241 R 241

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIA 182
           Q+ H+ +++L     + PI I+  EY E  +L D +     P    L +   L +A  IA
Sbjct: 64  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFL---KTPSGIKLTINKLLDMAAQIA 119
Query: 183 HALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWT 242
             +A++     R  +  +L +  IL ++    K+ DF  +  I + E      ++F    
Sbjct: 120 EGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPI-K 175
Query: 243 YSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           ++APE    G F  K DV++F  +L E++T
Sbjct: 176 WTAPEAINYGTFTIKSDVWSFGILLTEIVT 205

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 15/191 (7%)
Query: 93  QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYT 152
           Q++++  +K  +  S+SA +           + H+HI++  G C E    ++VFEY  + 
Sbjct: 40  QDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHG 99
Query: 153 TLRDRIFGAPQPHFE-----------PLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNL 201
            L +R   +  P  +           PL L   L VA  +A  + YL  G     V  +L
Sbjct: 100 DL-NRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYL-AGL--HFVHRDL 155
Query: 202 ISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVY 261
            +   L  +  V K+ DF  S  I   + + +         +  PE      F  + DV+
Sbjct: 156 ATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVW 215
Query: 262 TFSTVLLELLT 272
           +F  VL E+ T
Sbjct: 216 SFGVVLWEIFT 226

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIA 182
           Q+ H+ +++L     + PI I+  EY E  +L D +     P    L +   L +A  IA
Sbjct: 72  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFL---KTPSGIKLTINKLLDMAAQIA 127
Query: 183 HALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWT 242
             +A++     R  +  +L +  IL ++    K+ DF  +  I + E      ++F    
Sbjct: 128 EGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPI-K 183
Query: 243 YSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           ++APE    G F  K DV++F  +L E++T
Sbjct: 184 WTAPEAINYGTFTIKSDVWSFGILLTEIVT 213

>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor Length = 307

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 91/228 (39%), Gaps = 15/228 (6%)
Query: 57  PYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQ-------ERLISVMKYNESYSDS 109
           P  ++   E E++       + + Q S   +Y+G  +       E  ++V   NES S  
Sbjct: 4   PSSVYVPDEWEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLR 63
Query: 110 ACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRD-----RIFGAPQP 164
                +N           H+++L+G   +    ++V E   +  L+      R      P
Sbjct: 64  ERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNP 123
Query: 165 HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS 224
              P  L+  +++A  IA  +AYL+    +  V  NL +   +   +   K+ DF  +  
Sbjct: 124 GRPPPTLQEMIQMAAEIADGMAYLNA---KKFVHRNLAARNCMVAHDFTVKIGDFGMTRD 180
Query: 225 IPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           I E + +           + APE  + GVF    D+++F  VL E+ +
Sbjct: 181 IYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITS 228

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 15/191 (7%)
Query: 93  QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYT 152
           Q++++  +K  +  S+SA +           + H+HI++  G C E    ++VFEY  + 
Sbjct: 46  QDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHG 105
Query: 153 TLRDRIFGAPQPHFE-----------PLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNL 201
            L +R   +  P  +           PL L   L VA  +A  + YL  G     V  +L
Sbjct: 106 DL-NRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYL-AGL--HFVHRDL 161
Query: 202 ISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVY 261
            +   L  +  V K+ DF  S  I   + + +         +  PE      F  + DV+
Sbjct: 162 ATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVW 221
Query: 262 TFSTVLLELLT 272
           +F  VL E+ T
Sbjct: 222 SFGVVLWEIFT 232

>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a Resolution. Length = 322

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 22/241 (9%)
Query: 60  IFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQ-------ERLISVMKYNESYSDSACK 112
           ++   E E+A       + + Q S   +Y+G  +       E  +++   NE+ S     
Sbjct: 14  VYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERI 73
Query: 113 FSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRD-----RIFGAPQPHFE 167
             +N      + +  H+++L+G   +    +++ E      L+      R   A  P   
Sbjct: 74  EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLA 133
Query: 168 PLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE 227
           P  L   +++A  IA  +AYL+       V  +L +   +  E+   K+ DF  +  I E
Sbjct: 134 PPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYE 190
Query: 228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-------GQSTRDLL 280
            + +           + +PE  + GVF    DV++F  VL E+ T       G S   +L
Sbjct: 191 TDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVL 250
Query: 281 R 281
           R
Sbjct: 251 R 251

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIA 182
           Q+ H+ +++L     + PI I+  EY E  +L D +     P    L +   L +A  IA
Sbjct: 70  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFL---KTPSGIKLTINKLLDMAAQIA 125
Query: 183 HALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWT 242
             +A++     R  +  +L +  IL ++    K+ DF  +  I + E      ++F    
Sbjct: 126 EGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPI-K 181
Query: 243 YSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           ++APE    G F  K DV++F  +L E++T
Sbjct: 182 WTAPEAINYGTFTIKSDVWSFGILLTEIVT 211

>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 91/228 (39%), Gaps = 15/228 (6%)
Query: 57  PYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQ-------ERLISVMKYNESYSDS 109
           P  ++   E E++       + + Q S   +Y+G  +       E  ++V   NES S  
Sbjct: 3   PSSVYVPDEWEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLR 62
Query: 110 ACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRD-----RIFGAPQP 164
                +N           H+++L+G   +    ++V E   +  L+      R      P
Sbjct: 63  ERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNP 122
Query: 165 HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS 224
              P  L+  +++A  IA  +AYL+    +  V  NL +   +   +   K+ DF  +  
Sbjct: 123 GRPPPTLQEMIQMAAEIADGMAYLNA---KKFVHRNLAARNCMVAHDFTVKIGDFGMTRD 179
Query: 225 IPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           I E + +           + APE  + GVF    D+++F  VL E+ +
Sbjct: 180 IYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITS 227

>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 22/195 (11%)
Query: 97  ISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLR- 155
           ++V    E+ S S  +  ++      Q++H H++KL G C +    +L+ EY +Y +LR 
Sbjct: 56  VAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRG 115
Query: 156 ----DRIFGA--------------PQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIV 197
                R  G                 P    L +   +  A  I+  + YL       +V
Sbjct: 116 FLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLA---EMKLV 172
Query: 198 FGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEK 257
             +L +  IL  E    K+ DF  S  + E ++++          + A E     ++  +
Sbjct: 173 HRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQ 232
Query: 258 LDVYTFSTVLLELLT 272
            DV++F  +L E++T
Sbjct: 233 SDVWSFGVLLWEIVT 247

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIA 182
           Q+ H+ +++L     + PI I+  EY E  +L D +     P    L +   L +A  IA
Sbjct: 73  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFL---KTPSGIKLTINKLLDMAAQIA 128
Query: 183 HALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWT 242
             +A++     R  +  +L +  IL ++    K+ DF  +  I + E      ++F    
Sbjct: 129 EGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPI-K 184
Query: 243 YSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           ++APE    G F  K DV++F  +L E++T
Sbjct: 185 WTAPEAINYGTFTIKSDVWSFGILLTEIVT 214

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 7/187 (3%)
Query: 86  KLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV 145
           ++Y G W++  ++V            +  +       ++ H ++++L+G C   P   +V
Sbjct: 47  EVYVGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTLEPPFYIV 106
Query: 146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLC 205
            EY  Y  L D +    +     ++L   L +A  I+ A+ YL     +  +  +L +  
Sbjct: 107 TEYMPYGNLLDYLRECNREEVTAVVL---LYMATQISSAMEYLE---KKNFIHRDLAARN 160
Query: 206 ILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFST 265
            L  E +V K+ DF  S  +  G+T+           ++APE      F+ K DV+ F  
Sbjct: 161 CLVGENHVVKVADFGLS-RLMTGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGV 219
Query: 266 VLLELLT 272
           +L E+ T
Sbjct: 220 LLWEIAT 226

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIA 182
           Q+ H+ +++L     + PI I+  EY E  +L D +     P    L +   L +A  IA
Sbjct: 64  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFL---KTPSGIKLTINKLLDMAAQIA 119
Query: 183 HALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWT 242
             +A++     R  +  +L +  IL ++    K+ DF  +  I + E      ++F    
Sbjct: 120 EGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPI-K 175
Query: 243 YSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           ++APE    G F  K DV++F  +L E++T
Sbjct: 176 WTAPEAINYGTFTIKSDVWSFGILLTEIVT 205

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIA 182
           Q+ H+ +++L     + PI I+  EY E  +L D +     P    L +   L +A  IA
Sbjct: 70  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFL---KTPSGIKLTINKLLDMAAQIA 125
Query: 183 HALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWT 242
             +A++     R  +  +L +  IL ++    K+ DF  +  I + E      ++F    
Sbjct: 126 EGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPI-K 181
Query: 243 YSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           ++APE    G F  K DV++F  +L E++T
Sbjct: 182 WTAPEAINYGTFTIKSDVWSFGILLTEIVT 211

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%)
Query: 93  QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYT 152
           Q++++  +K  +  S+SA +           + H+HI++  G C E    ++VFEY  + 
Sbjct: 69  QDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHG 128
Query: 153 TLRDRIFGAPQPHFE-----------PLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNL 201
            L +R   +  P  +           PL L   L VA  +A  + YL  G     V  +L
Sbjct: 129 DL-NRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYL-AGL--HFVHRDL 184
Query: 202 ISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPE---YKRGGVFNEKL 258
            +   L  +  V K+ DF  S  I   + + +         +  PE   Y++   F  + 
Sbjct: 185 ATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRK---FTTES 241
Query: 259 DVYTFSTVLLELLT 272
           DV++F  VL E+ T
Sbjct: 242 DVWSFGVVLWEIFT 255

>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor 1 Length = 317

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 14/158 (8%)
Query: 126 HKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHF-----------EPLLLKHR 174
           HK+I+ L+G C +     ++ EY     LR+ +     P             E L  K  
Sbjct: 93  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQAREPPGLEYSYNPSHNPEEQLSSKDL 152
Query: 175 LKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIIT 234
           +  A  +A  + YL     +  +  +L +  +L  E+NV K+ DF  +  I   + +  T
Sbjct: 153 VSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKT 209
Query: 235 RSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            +      + APE     ++  + DV++F  +L E+ T
Sbjct: 210 TNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFT 247

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIA 182
           Q+ H+ +++L     + PI I+  EY E  +L D +     P    L +   L +A  IA
Sbjct: 59  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFL---KTPSGIKLTINKLLDMAAQIA 114
Query: 183 HALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWT 242
             +A++     R  +  +L +  IL ++    K+ DF  +  I + E      ++F    
Sbjct: 115 EGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPI-K 170
Query: 243 YSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           ++APE    G F  K DV++F  +L E++T
Sbjct: 171 WTAPEAINYGTFTIKSDVWSFGILLTEIVT 200

>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain Length = 308

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/248 (20%), Positives = 98/248 (39%), Gaps = 22/248 (8%)
Query: 53  GKYNPYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQ-------ERLISVMKYNES 105
           G ++   ++   E E+A       + + Q S   +Y+G  +       E  +++   NE+
Sbjct: 1   GSFSAADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEA 60
Query: 106 YSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRD-----RIFG 160
            S       +N      + +  H+++L+G   +    +++ E      L+      R   
Sbjct: 61  ASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEM 120
Query: 161 APQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS 220
              P   P  L   +++A  IA  +AYL+       V  +L +   +  E+   K+ DF 
Sbjct: 121 ENNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFG 177
Query: 221 ESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-------G 273
            +  I E + +           + +PE  + GVF    DV++F  VL E+ T       G
Sbjct: 178 MTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQG 237
Query: 274 QSTRDLLR 281
            S   +LR
Sbjct: 238 LSNEQVLR 245

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIA 182
           Q+ H+ +++L     + PI I+  EY E  +L D +     P    L +   L +A  IA
Sbjct: 69  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFL---KTPSGIKLTINKLLDMAAQIA 124
Query: 183 HALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWT 242
             +A++     R  +  +L +  IL ++    K+ DF  +  I + E      ++F    
Sbjct: 125 EGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPI-K 180
Query: 243 YSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           ++APE    G F  K DV++F  +L E++T
Sbjct: 181 WTAPEAINYGTFTIKSDVWSFGILLTEIVT 210

>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Human Insulin Receptor Length = 306

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 91/228 (39%), Gaps = 15/228 (6%)
Query: 57  PYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQ-------ERLISVMKYNESYSDS 109
           P  +F   E E++       + + Q S   +Y+G  +       E  ++V   NES S  
Sbjct: 3   PSSVFVPDEWEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLR 62
Query: 110 ACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRD-----RIFGAPQP 164
                +N           H+++L+G   +    ++V E   +  L+      R      P
Sbjct: 63  ERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNP 122
Query: 165 HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS 224
              P  L+  +++A  IA  +AYL+    +  V  +L +   +   +   K+ DF  +  
Sbjct: 123 GRPPPTLQEMIQMAAEIADGMAYLNA---KKFVHRDLAARNCMVAHDFTVKIGDFGMTRD 179
Query: 225 IPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           I E + +           + APE  + GVF    D+++F  VL E+ +
Sbjct: 180 IYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITS 227

>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase In Complex With Arq 069 Length = 306

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 14/158 (8%)
Query: 126 HKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHF-----------EPLLLKHR 174
           HK+I+ L+G C +     ++ EY     LR+ +     P             E L  K  
Sbjct: 82  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDL 141
Query: 175 LKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIIT 234
           +  A  +A  + YL     +  +  +L +  +L  E+NV K+ DF  +  I   + +  T
Sbjct: 142 VSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKT 198
Query: 235 RSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            +      + APE     ++  + DV++F  +L E+ T
Sbjct: 199 TNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFT 236

>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fibroblast Growth Factor Receptor 1 Length = 310

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 14/158 (8%)
Query: 126 HKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHF-----------EPLLLKHR 174
           HK+I+ L+G C +     ++ EY     LR+ +     P             E L  K  
Sbjct: 86  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDL 145
Query: 175 LKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIIT 234
           +  A  +A  + YL     +  +  +L +  +L  E+NV K+ DF  +  I   + +  T
Sbjct: 146 VSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKT 202
Query: 235 RSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            +      + APE     ++  + DV++F  +L E+ T
Sbjct: 203 TNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFT 240

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIA 182
           Q+ H+ +++L     + PI I+  EY E  +L D +     P    L +   L +A  IA
Sbjct: 74  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFL---KTPSGIKLTINKLLDMAAQIA 129
Query: 183 HALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWT 242
             +A++     R  +  +L +  IL ++    K+ DF  +  I + E      ++F    
Sbjct: 130 EGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPI-K 185
Query: 243 YSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           ++APE    G F  K DV++F  +L E++T
Sbjct: 186 WTAPEAINYGTFTIKSDVWSFGILLTEIVT 215

>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3- Methoxybenzyl)-7-Azaindole Length = 302

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 14/158 (8%)
Query: 126 HKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHF-----------EPLLLKHR 174
           HK+I+ L+G C +     ++ EY     LR+ +     P             E L  K  
Sbjct: 78  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKDL 137
Query: 175 LKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIIT 234
           +  A  +A  + YL     +  +  +L +  +L  E+NV K+ DF  +  I   + +  T
Sbjct: 138 VSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKT 194
Query: 235 RSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            +      + APE     ++  + DV++F  +L E+ T
Sbjct: 195 TNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFT 232

>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor Receptor 1 Kinase Domain In Complex With Compound 1 Length = 309

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 14/158 (8%)
Query: 126 HKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHF-----------EPLLLKHR 174
           HK+I+ L+G C +     ++ EY     LR+ +     P             E L  K  
Sbjct: 85  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDL 144
Query: 175 LKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIIT 234
           +  A  +A  + YL     +  +  +L +  +L  E+NV K+ DF  +  I   + +  T
Sbjct: 145 VSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKT 201
Query: 235 RSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            +      + APE     ++  + DV++F  +L E+ T
Sbjct: 202 TNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFT 239

>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 14/158 (8%)
Query: 126 HKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHF-----------EPLLLKHR 174
           HK+I+ L+G C +     ++ EY     LR+ +     P             E L  K  
Sbjct: 93  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKDL 152
Query: 175 LKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIIT 234
           +  A  +A  + YL     +  +  +L +  +L  E+NV K+ DF  +  I   + +  T
Sbjct: 153 VSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKT 209
Query: 235 RSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            +      + APE     ++  + DV++F  +L E+ T
Sbjct: 210 TNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFT 247

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 76/187 (40%), Gaps = 22/187 (11%)
Query: 124 MDHKHILKLIGCCLETPIP--ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           + H +I+K  G C         L+ EY  Y +LRD +    Q H E +     L+    I
Sbjct: 71  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QAHAERIDHIKLLQYTSQI 126
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG-ETHIITRSRFGA 240
              + YL     +  +  +L +  IL   EN  K+ DF  +  +P+  E   +       
Sbjct: 127 CKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESP 183
Query: 241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-----GQSTRDLLRTHGS-------VRH 288
             + APE      F+   DV++F  VL EL T          + +R  G+       V H
Sbjct: 184 IFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFH 243
Query: 289 LIEYLKN 295
           LIE LKN
Sbjct: 244 LIELLKN 250

>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast Growth Factor Receptor 1 In Complex With 5-(2-Thienyl) Nicotinic Acid Length = 317

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 14/158 (8%)
Query: 126 HKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHF-----------EPLLLKHR 174
           HK+I+ L+G C +     ++ EY     LR+ +     P             E L  K  
Sbjct: 93  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDL 152
Query: 175 LKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIIT 234
           +  A  +A  + YL     +  +  +L +  +L  E+NV K+ DF  +  I   + +  T
Sbjct: 153 VSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKT 209
Query: 235 RSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            +      + APE     ++  + DV++F  +L E+ T
Sbjct: 210 TNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFT 247

>pdb|3B2T|A Chain A, Structure Of Phosphotransferase Length = 311

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Query: 108 DSACKFSINNIVYAAQM-----DHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAP 162
           D A +  ++++V   +M      HK+I+ L+G C +     ++ EY     LR+ +    
Sbjct: 64  DDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARR 123
Query: 163 QPHF-----------EPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE 211
            P             E +  K  +     +A  + YL     +  +  +L +  +L  E 
Sbjct: 124 PPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QKCIHRDLTARNVLVTEN 180
Query: 212 NVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELL 271
           NV K+ DF  +  I   + +  T +      + APE     V+  + DV++F  ++ E+ 
Sbjct: 181 NVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIF 240
Query: 272 T 272
           T
Sbjct: 241 T 241

>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In Complex With The Sh2 Domain Of Aps Length = 306

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 15/228 (6%)
Query: 57  PYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQ-------ERLISVMKYNESYSDS 109
           P  ++   E E++       + + Q S   +Y+G  +       E  ++V   NES S  
Sbjct: 3   PSSVYVPDEWEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLR 62
Query: 110 ACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRD-----RIFGAPQP 164
                +N           H+++L+G   +    ++V E   +  L+      R      P
Sbjct: 63  ERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNP 122
Query: 165 HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS 224
              P  L+  +++A  IA  +AYL+    +  V  +L +   +   +   K+ DF  +  
Sbjct: 123 GRPPPTLQEMIQMAAEIADGMAYLNA---KKFVHRDLAARNCMVAHDFTVKIGDFGMTRD 179
Query: 225 IPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           I E +             + APE  + GVF    D+++F  VL E+ +
Sbjct: 180 IXETDXXRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITS 227

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 14/153 (9%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFE-PLLLKHRLKVAMGI 181
           ++ H+ +++L     E PI I V EY    +L D + G    +   P L+    ++A G+
Sbjct: 59  KLRHEKLVQLYAVVSEEPIXI-VTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGM 117
Query: 182 AHA--LAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG 239
           A+   + Y+H          +L +  IL  E  V K+ DF  +  I + E      ++F 
Sbjct: 118 AYVERMNYVHR---------DLRAANILVGENLVCKVADFGLARLIEDNEXTARQGAKFP 168
Query: 240 AWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
              ++APE    G F  K DV++F  +L EL T
Sbjct: 169 I-KWTAPEAALYGRFTIKSDVWSFGILLTELTT 200

>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex With An Hydantoin Inhibitor Length = 305

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 95/241 (39%), Gaps = 22/241 (9%)
Query: 60  IFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQ-------ERLISVMKYNESYSDSACK 112
           +F   E E+A       + + Q S   +Y+G  +       E  +++   NE+ S     
Sbjct: 5   VFVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERI 64
Query: 113 FSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRD-----RIFGAPQPHFE 167
             +N      + +  H+++L+G   +    +++ E      L+      R      P   
Sbjct: 65  EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLA 124
Query: 168 PLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE 227
           P  L   +++A  IA  +AYL+       V  +L +   +  E+   K+ DF  +  I E
Sbjct: 125 PPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYE 181
Query: 228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-------GQSTRDLL 280
            + +           + +PE  + GVF    DV++F  VL E+ T       G S   +L
Sbjct: 182 TDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVL 241
Query: 281 R 281
           R
Sbjct: 242 R 242

>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Complexed With The Inhibitor Pp1 Length = 314

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 79/195 (40%), Gaps = 22/195 (11%)
Query: 97  ISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLR- 155
           ++V    E+ S S  +  ++      Q++H H++KL G C +    +L+ EY +Y +LR 
Sbjct: 56  VAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRG 115
Query: 156 ----DRIFGA--------------PQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIV 197
                R  G                 P    L +   +  A  I+  + YL       +V
Sbjct: 116 FLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLA---EMSLV 172
Query: 198 FGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEK 257
             +L +  IL  E    K+ DF  S  + E ++ +          + A E     ++  +
Sbjct: 173 HRDLAARNILVAEGRKMKISDFGLSRDVYEEDSXVKRSQGRIPVKWMAIESLFDHIYTTQ 232
Query: 258 LDVYTFSTVLLELLT 272
            DV++F  +L E++T
Sbjct: 233 SDVWSFGVLLWEIVT 247

>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 79/195 (40%), Gaps = 22/195 (11%)
Query: 97  ISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLR- 155
           ++V    E+ S S  +  ++      Q++H H++KL G C +    +L+ EY +Y +LR 
Sbjct: 56  VAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRG 115
Query: 156 ----DRIFGA--------------PQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIV 197
                R  G                 P    L +   +  A  I+  + YL       +V
Sbjct: 116 FLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLA---EMKLV 172
Query: 198 FGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEK 257
             +L +  IL  E    K+ DF  S  + E ++ +          + A E     ++  +
Sbjct: 173 HRDLAARNILVAEGRKMKISDFGLSRDVYEEDSXVKRSQGRIPVKWMAIESLFDHIYTTQ 232
Query: 258 LDVYTFSTVLLELLT 272
            DV++F  +L E++T
Sbjct: 233 SDVWSFGVLLWEIVT 247

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIA 182
           ++ H  +++L G CLE     LVFE+ E+  L D +    +        +  L + + + 
Sbjct: 58  KLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYL----RTQRGLFAAETLLGMCLDVC 113
Query: 183 HALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWT 242
             +AYL       ++  +L +   L  E  V K+ DF  +  + + +    T ++F    
Sbjct: 114 EGMAYLE---EASVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPV-K 169
Query: 243 YSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           +++PE      ++ K DV++F  ++ E+ +
Sbjct: 170 WASPEVFSFSRYSSKSDVWSFGVLMWEVFS 199

>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase Domain With 3-(2,6-Dichloro-3, 5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1- Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398) Length = 382

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 14/158 (8%)
Query: 126 HKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHF-----------EPLLLKHR 174
           HK+I+ L+G C +     ++ EY     LR+ +     P             E L  K  
Sbjct: 134 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDL 193
Query: 175 LKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIIT 234
           +  A  +A  + YL     +  +  +L +  +L  E+NV K+ DF  +  I   + +  T
Sbjct: 194 VSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKT 250
Query: 235 RSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            +      + APE     ++  + DV++F  +L E+ T
Sbjct: 251 TNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFT 288

>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain Length = 316

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Query: 108 DSACKFSINNIVYAAQM-----DHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAP 162
           D A +  ++++V   +M      HK+I+ L+G C +     ++ EY     LR+ +    
Sbjct: 69  DDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARR 128
Query: 163 QPHF-----------EPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE 211
            P             E +  K  +     +A  + YL     +  +  +L +  +L  E 
Sbjct: 129 PPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QKCIHRDLAARNVLVTEN 185
Query: 212 NVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELL 271
           NV K+ DF  +  I   + +  T +      + APE     V+  + DV++F  ++ E+ 
Sbjct: 186 NVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIF 245
Query: 272 T 272
           T
Sbjct: 246 T 246

>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K526e Mutation Responsible For Crouzon Syndrome Length = 324

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Query: 108 DSACKFSINNIVYAAQM-----DHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAP 162
           D A +  ++++V   +M      HK+I+ L+G C +     ++ EY     LR+ +    
Sbjct: 77  DDATEEDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARR 136
Query: 163 QPHF-----------EPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE 211
            P             E +  K  +     +A  + YL     +  +  +L +  +L  E 
Sbjct: 137 PPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QKCIHRDLAARNVLVTEN 193
Query: 212 NVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELL 271
           NV K+ DF  +  I   + +  T +      + APE     V+  + DV++F  ++ E+ 
Sbjct: 194 NVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIF 253
Query: 272 T 272
           T
Sbjct: 254 T 254

>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild Type Fgf Receptor 2 (Fgfr2) Kinase Domain Length = 370

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Query: 108 DSACKFSINNIVYAAQM-----DHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAP 162
           D A +  ++++V   +M      HK+I+ L+G C +     ++ EY     LR+ +    
Sbjct: 123 DDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARR 182
Query: 163 QPHF-----------EPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE 211
            P             E +  K  +     +A  + YL     +  +  +L +  +L  E 
Sbjct: 183 PPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QKCIHRDLAARNVLVTEN 239
Query: 212 NVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELL 271
           NV K+ DF  +  I   + +  T +      + APE     V+  + DV++F  ++ E+ 
Sbjct: 240 NVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIF 299
Query: 272 T 272
           T
Sbjct: 300 T 300

>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase In Complex With Arq 069 Length = 313

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Query: 108 DSACKFSINNIVYAAQM-----DHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAP 162
           D A +  ++++V   +M      HK+I+ L+G C +     ++ EY     LR+ +    
Sbjct: 66  DDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARR 125
Query: 163 QPHF-----------EPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE 211
            P             E +  K  +     +A  + YL     +  +  +L +  +L  E 
Sbjct: 126 PPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QKCIHRDLAARNVLVTEN 182
Query: 212 NVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELL 271
           NV K+ DF  +  I   + +  T +      + APE     V+  + DV++F  ++ E+ 
Sbjct: 183 NVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIF 242
Query: 272 T 272
           T
Sbjct: 243 T 243

>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K659n Mutation Responsible For An Unclassified Craniosynostosis Syndrome. Length = 324

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Query: 108 DSACKFSINNIVYAAQM-----DHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAP 162
           D A +  ++++V   +M      HK+I+ L+G C +     ++ EY     LR+ +    
Sbjct: 77  DDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARR 136
Query: 163 QPHF-----------EPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE 211
            P             E +  K  +     +A  + YL     +  +  +L +  +L  E 
Sbjct: 137 PPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QKCIHRDLAARNVLVTEN 193
Query: 212 NVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELL 271
           NV K+ DF  +  I   + +  T +      + APE     V+  + DV++F  ++ E+ 
Sbjct: 194 NVMKIADFGLARDINNIDYYKNTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIF 253
Query: 272 T 272
           T
Sbjct: 254 T 254

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 76/187 (40%), Gaps = 22/187 (11%)
Query: 124 MDHKHILKLIGCCLETPIP--ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           + H +I+K  G C         L+ EY  Y +LRD +    Q H E +     L+    I
Sbjct: 73  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTSQI 128
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG-ETHIITRSRFGA 240
              + YL     +  +  +L +  IL   EN  K+ DF  +  +P+  E   +       
Sbjct: 129 CKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESP 185
Query: 241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-----GQSTRDLLRTHGS-------VRH 288
             + APE      F+   DV++F  VL EL T          + +R  G+       V H
Sbjct: 186 IFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFH 245
Query: 289 LIEYLKN 295
           LIE LKN
Sbjct: 246 LIELLKN 252

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 76/187 (40%), Gaps = 22/187 (11%)
Query: 124 MDHKHILKLIGCCLETPIP--ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           + H +I+K  G C         L+ EY  Y +LRD +    Q H E +     L+    I
Sbjct: 71  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTSQI 126
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG-ETHIITRSRFGA 240
              + YL     +  +  +L +  IL   EN  K+ DF  +  +P+  E   +       
Sbjct: 127 CKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESP 183
Query: 241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-----GQSTRDLLRTHGS-------VRH 288
             + APE      F+   DV++F  VL EL T          + +R  G+       V H
Sbjct: 184 IFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFH 243
Query: 289 LIEYLKN 295
           LIE LKN
Sbjct: 244 LIELLKN 250

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 76/187 (40%), Gaps = 22/187 (11%)
Query: 124 MDHKHILKLIGCCLETPIP--ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           + H +I+K  G C         L+ EY  Y +LRD +    Q H E +     L+    I
Sbjct: 74  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTSQI 129
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG-ETHIITRSRFGA 240
              + YL     +  +  +L +  IL   EN  K+ DF  +  +P+  E   +       
Sbjct: 130 CKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESP 186
Query: 241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-----GQSTRDLLRTHGS-------VRH 288
             + APE      F+   DV++F  VL EL T          + +R  G+       V H
Sbjct: 187 IFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFH 246
Query: 289 LIEYLKN 295
           LIE LKN
Sbjct: 247 LIELLKN 253

>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp Analog And Substrate Peptide Length = 334

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 74/181 (40%), Gaps = 19/181 (10%)
Query: 108 DSACKFSINNIVYAAQM-----DHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAP 162
           D A +  ++++V   +M      HK+I+ L+G C +     ++ EY     LR+ +    
Sbjct: 77  DDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARR 136
Query: 163 QPHF-----------EPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE 211
            P             E +  K  +     +A  + YL     +  +  +L +  +L  E 
Sbjct: 137 PPGMEXSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QKCIHRDLAARNVLVTEN 193
Query: 212 NVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELL 271
           NV K+ DF  +  I   +    T +      + APE     V+  + DV++F  ++ E+ 
Sbjct: 194 NVMKIADFGLARDINNIDXXKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIF 253
Query: 272 T 272
           T
Sbjct: 254 T 254

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 76/187 (40%), Gaps = 22/187 (11%)
Query: 124 MDHKHILKLIGCCLETPIP--ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           + H +I+K  G C         L+ EY  Y +LRD +    Q H E +     L+    I
Sbjct: 99  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTSQI 154
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG-ETHIITRSRFGA 240
              + YL     +  +  +L +  IL   EN  K+ DF  +  +P+  E   +       
Sbjct: 155 CKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESP 211
Query: 241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-----GQSTRDLLRTHGS-------VRH 288
             + APE      F+   DV++F  VL EL T          + +R  G+       V H
Sbjct: 212 IFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFH 271
Query: 289 LIEYLKN 295
           LIE LKN
Sbjct: 272 LIELLKN 278

>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains Trapped In Trans-Phosphorylation Reaction Length = 334

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 74/181 (40%), Gaps = 19/181 (10%)
Query: 108 DSACKFSINNIVYAAQM-----DHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAP 162
           D A +  ++++V   +M      HK+I+ L+G C +     ++ EY     LR+ +    
Sbjct: 77  DDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARR 136
Query: 163 QPHF-----------EPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE 211
            P             E +  K  +     +A  + YL     +  +  +L +  +L  E 
Sbjct: 137 PPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QKCIHRDLAARNVLVTEN 193
Query: 212 NVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELL 271
           NV K+ DF  +  I   +    T +      + APE     V+  + DV++F  ++ E+ 
Sbjct: 194 NVMKIADFGLARDINNIDXXKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIF 253
Query: 272 T 272
           T
Sbjct: 254 T 254

>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A Pyrrolo-Pyridine Inhibitor Length = 273

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 66/165 (40%), Gaps = 15/165 (9%)
Query: 118 IVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRI---FGAPQPHFEPLLLKHR 174
           I   A ++H++++K  G   E  I  L  EY     L DRI    G P+P  +     H+
Sbjct: 56  ICINAMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQ 113
Query: 175 LKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIIT 234
           L   +   H +   H    R I   NL     L +E +  K+ DF  +          + 
Sbjct: 114 LMAGVVYLHGIGITH----RDIKPENL-----LLDERDNLKISDFGLATVFRYNNRERLL 164
Query: 235 RSRFGAWTYSAPE-YKRGGVFNEKLDVYTFSTVLLELLTGQSTRD 278
               G   Y APE  KR     E +DV++   VL  +L G+   D
Sbjct: 165 NKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWD 209

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 76/187 (40%), Gaps = 22/187 (11%)
Query: 124 MDHKHILKLIGCCLETPIP--ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           + H +I+K  G C         L+ EY  Y +LRD +    Q H E +     L+    I
Sbjct: 75  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTSQI 130
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG-ETHIITRSRFGA 240
              + YL     +  +  +L +  IL   EN  K+ DF  +  +P+  E   +       
Sbjct: 131 CKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESP 187
Query: 241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-----GQSTRDLLRTHGS-------VRH 288
             + APE      F+   DV++F  VL EL T          + +R  G+       V H
Sbjct: 188 IFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFH 247
Query: 289 LIEYLKN 295
           LIE LKN
Sbjct: 248 LIELLKN 254

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 76/187 (40%), Gaps = 22/187 (11%)
Query: 124 MDHKHILKLIGCCLETPIP--ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           + H +I+K  G C         L+ EY  Y +LRD +    Q H E +     L+    I
Sbjct: 68  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTSQI 123
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG-ETHIITRSRFGA 240
              + YL     +  +  +L +  IL   EN  K+ DF  +  +P+  E   +       
Sbjct: 124 CKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESP 180
Query: 241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-----GQSTRDLLRTHGS-------VRH 288
             + APE      F+   DV++F  VL EL T          + +R  G+       V H
Sbjct: 181 IFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFH 240
Query: 289 LIEYLKN 295
           LIE LKN
Sbjct: 241 LIELLKN 247

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 76/187 (40%), Gaps = 22/187 (11%)
Query: 124 MDHKHILKLIGCCLETPIP--ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           + H +I+K  G C         L+ EY  Y +LRD +    Q H E +     L+    I
Sbjct: 66  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTSQI 121
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG-ETHIITRSRFGA 240
              + YL     +  +  +L +  IL   EN  K+ DF  +  +P+  E   +       
Sbjct: 122 CKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESP 178
Query: 241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-----GQSTRDLLRTHGS-------VRH 288
             + APE      F+   DV++F  VL EL T          + +R  G+       V H
Sbjct: 179 IFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFH 238
Query: 289 LIEYLKN 295
           LIE LKN
Sbjct: 239 LIELLKN 245

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 81/187 (43%), Gaps = 7/187 (3%)
Query: 86  KLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV 145
           ++Y+G W++  ++V            +  +       ++ H ++++L+G C   P   ++
Sbjct: 26  EVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 85
Query: 146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLC 205
            E+  Y  L D +    +     ++L   L +A  I+ A+ YL     +  +  +L +  
Sbjct: 86  IEFMTYGNLLDYLRECNRQEVSAVVL---LYMATQISSAMEYLE---KKNFIHRDLAARN 139
Query: 206 ILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFST 265
            L  E ++ K+ DF  S  +  G+T            ++APE      F+ K DV+ F  
Sbjct: 140 CLVGENHLVKVADFGLS-RLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGV 198
Query: 266 VLLELLT 272
           +L E+ T
Sbjct: 199 LLWEIAT 205

>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 14/158 (8%)
Query: 126 HKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHF-----------EPLLLKHR 174
           HK+I+ L+G C +     ++ EY     LR+ +     P             E L  K  
Sbjct: 93  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEFSFNPSHNPEEQLSSKDL 152
Query: 175 LKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIIT 234
           +  A  +A  + YL     +  +  +L +  +L  E+NV K+ DF  +  I   +    T
Sbjct: 153 VSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDXXKKT 209
Query: 235 RSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            +      + APE     ++  + DV++F  +L E+ T
Sbjct: 210 TNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFT 247

>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2- Yl]amino}phenyl)acetic Acid Length = 303

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 89/225 (39%), Gaps = 15/225 (6%)
Query: 60  IFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQ-------ERLISVMKYNESYSDSACK 112
           +F   E E++       + + Q S   +Y+G  +       E  ++V   NES S     
Sbjct: 3   VFVPDEWEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERI 62
Query: 113 FSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRD-----RIFGAPQPHFE 167
             +N           H+++L+G   +    ++V E   +  L+      R      P   
Sbjct: 63  EFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRP 122
Query: 168 PLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE 227
           P  L+  +++A  IA  +AYL+    +  V  +L +   +   +   K+ DF  +  I E
Sbjct: 123 PPTLQEMIQMAAEIADGMAYLNA---KKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXE 179
Query: 228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            +             + APE  + GVF    D+++F  VL E+ +
Sbjct: 180 TDXXRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITS 224

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 76/187 (40%), Gaps = 22/187 (11%)
Query: 124 MDHKHILKLIGCCLETPIP--ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           + H +I+K  G C         L+ EY  Y +LRD +    Q H E +     L+    I
Sbjct: 67  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTSQI 122
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG-ETHIITRSRFGA 240
              + YL     +  +  +L +  IL   EN  K+ DF  +  +P+  E   +       
Sbjct: 123 CKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESP 179
Query: 241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-----GQSTRDLLRTHGS-------VRH 288
             + APE      F+   DV++F  VL EL T          + +R  G+       V H
Sbjct: 180 IFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFH 239
Query: 289 LIEYLKN 295
           LIE LKN
Sbjct: 240 LIELLKN 246

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 76/187 (40%), Gaps = 22/187 (11%)
Query: 124 MDHKHILKLIGCCLETPIP--ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           + H +I+K  G C         L+ EY  Y +LRD +    Q H E +     L+    I
Sbjct: 68  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTSQI 123
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG-ETHIITRSRFGA 240
              + YL     +  +  +L +  IL   EN  K+ DF  +  +P+  E   +       
Sbjct: 124 CKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESP 180
Query: 241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-----GQSTRDLLRTHGS-------VRH 288
             + APE      F+   DV++F  VL EL T          + +R  G+       V H
Sbjct: 181 IFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFH 240
Query: 289 LIEYLKN 295
           LIE LKN
Sbjct: 241 LIELLKN 247

>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549t Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Query: 108 DSACKFSINNIVYAAQM-----DHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAP 162
           D A +  ++++V   +M      HK+I+ L+G C +     ++ EY     LR+ +    
Sbjct: 77  DDATEKDLSDLVSEMEMMKMIGKHKNIITLLGACTQDGPLYVIVEYASKGNLREYLRARR 136
Query: 163 QPHF-----------EPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE 211
            P             E +  K  +     +A  + YL     +  +  +L +  +L  E 
Sbjct: 137 PPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QKCIHRDLAARNVLVTEN 193
Query: 212 NVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELL 271
           NV K+ DF  +  I   + +  T +      + APE     V+  + DV++F  ++ E+ 
Sbjct: 194 NVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIF 253
Query: 272 T 272
           T
Sbjct: 254 T 254

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 14/153 (9%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFE-PLLLKHRLKVAMGI 181
           ++ H+ +++L     E PI I V EY    +L D + G    +   P L+    ++A G+
Sbjct: 235 KLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGM 293
Query: 182 AHA--LAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG 239
           A+   + Y+H          +L +  IL  E  V K+ DF  +  I + E      ++F 
Sbjct: 294 AYVERMNYVHR---------DLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFP 344
Query: 240 AWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
              ++APE    G F  K DV++F  +L EL T
Sbjct: 345 I-KWTAPEAALYGRFTIKSDVWSFGILLTELTT 376

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 14/153 (9%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFE-PLLLKHRLKVAMGI 181
           ++ H+ +++L     E PI I V EY    +L D + G    +   P L+    ++A G+
Sbjct: 235 KLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGM 293
Query: 182 AHA--LAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG 239
           A+   + Y+H          +L +  IL  E  V K+ DF  +  I + E      ++F 
Sbjct: 294 AYVERMNYVHR---------DLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFP 344
Query: 240 AWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
              ++APE    G F  K DV++F  +L EL T
Sbjct: 345 I-KWTAPEAALYGRFTIKSDVWSFGILLTELTT 376

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 76/187 (40%), Gaps = 22/187 (11%)
Query: 124 MDHKHILKLIGCCLETPIP--ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           + H +I+K  G C         L+ EY  Y +LRD +    Q H E +     L+    I
Sbjct: 72  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTSQI 127
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG-ETHIITRSRFGA 240
              + YL     +  +  +L +  IL   EN  K+ DF  +  +P+  E   +       
Sbjct: 128 CKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESP 184
Query: 241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-----GQSTRDLLRTHGS-------VRH 288
             + APE      F+   DV++F  VL EL T          + +R  G+       V H
Sbjct: 185 IFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFH 244
Query: 289 LIEYLKN 295
           LIE LKN
Sbjct: 245 LIELLKN 251

>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 90/228 (39%), Gaps = 15/228 (6%)
Query: 57  PYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQ-------ERLISVMKYNESYSDS 109
           P  +F   E E++       + + Q S   +Y+G  +       E  ++V   NES S  
Sbjct: 3   PSSVFVPDEWEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLR 62
Query: 110 ACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRD-----RIFGAPQP 164
                +N           H+++L+G   +    ++V E   +  L+      R      P
Sbjct: 63  ERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNP 122
Query: 165 HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS 224
              P  L+  +++A  IA  +AYL+    +  V  +L +   +   +   K+ DF  +  
Sbjct: 123 GRPPPTLQEMIQMAAEIADGMAYLNA---KKFVHRDLAARNCMVAHDFTVKIGDFGMTRD 179
Query: 225 IPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           I E   +           + APE  + GVF    D+++F  VL E+ +
Sbjct: 180 IYETAYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITS 227

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 80/183 (43%), Gaps = 9/183 (4%)
Query: 90  GFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYG 149
           G+W  +    +K  +  S S   F I       ++ H  +++L G CLE     LVFE+ 
Sbjct: 46  GYWLNKDKVAIKTIKEGSMSEDDF-IEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFM 104
Query: 150 EYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFN 209
           E+  L D +    +        +  L + + +   +AYL       ++  +L +   L  
Sbjct: 105 EHGCLSDYL----RTQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVG 157
Query: 210 EENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLE 269
           E  V K+ DF  +  + + +    T ++F    +++PE      ++ K DV++F  ++ E
Sbjct: 158 ENQVIKVSDFGMTRFVLDDQYTSSTGTKFPV-KWASPEVFSFSRYSSKSDVWSFGVLMWE 216
Query: 270 LLT 272
           + +
Sbjct: 217 VFS 219

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 14/153 (9%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFE-PLLLKHRLKVAMGI 181
           ++ H+ +++L     E PI I V EY    +L D + G    +   P L+    ++A G+
Sbjct: 69  KLRHEKLVQLYAVVSEEPIYI-VIEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGM 127
Query: 182 AHA--LAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG 239
           A+   + Y+H          +L +  IL  E  V K+ DF  +  I + E      ++F 
Sbjct: 128 AYVERMNYVHR---------DLRAANILVGENLVCKVADFGLARLIEDNEXTARQGAKFP 178
Query: 240 AWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
              ++APE    G F  K DV++F  +L EL T
Sbjct: 179 I-KWTAPEAALYGRFTIKSDVWSFGILLTELTT 210

>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549h Mutation Responsible For Crouzon Syndrome. Length = 324

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Query: 108 DSACKFSINNIVYAAQM-----DHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAP 162
           D A +  ++++V   +M      HK+I+ L+G C +     ++ EY     LR+ +    
Sbjct: 77  DDATEKDLSDLVSEMEMMKMIGKHKNIIHLLGACTQDGPLYVIVEYASKGNLREYLRARR 136
Query: 163 QPHF-----------EPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE 211
            P             E +  K  +     +A  + YL     +  +  +L +  +L  E 
Sbjct: 137 PPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QKCIHRDLAARNVLVTEN 193
Query: 212 NVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELL 271
           NV K+ DF  +  I   + +  T +      + APE     V+  + DV++F  ++ E+ 
Sbjct: 194 NVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIF 253
Query: 272 T 272
           T
Sbjct: 254 T 254

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 14/153 (9%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFE-PLLLKHRLKVAMGI 181
           ++ H+ +++L     E PI I V EY    +L D + G    +   P L+    ++A G+
Sbjct: 235 KLRHEKLVQLYAVVSEEPIYI-VGEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGM 293
Query: 182 AHA--LAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG 239
           A+   + Y+H          +L +  IL  E  V K+ DF  +  I + E      ++F 
Sbjct: 294 AYVERMNYVHR---------DLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFP 344
Query: 240 AWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
              ++APE    G F  K DV++F  +L EL T
Sbjct: 345 I-KWTAPEAALYGRFTIKSDVWSFGILLTELTT 376

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 76/187 (40%), Gaps = 22/187 (11%)
Query: 124 MDHKHILKLIGCCLETPIP--ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           + H +I+K  G C         L+ EY  Y +LRD +    Q H E +     L+    I
Sbjct: 86  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTSQI 141
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG-ETHIITRSRFGA 240
              + YL     +  +  +L +  IL   EN  K+ DF  +  +P+  E   +       
Sbjct: 142 CKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESP 198
Query: 241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-----GQSTRDLLRTHGS-------VRH 288
             + APE      F+   DV++F  VL EL T          + +R  G+       V H
Sbjct: 199 IFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFH 258
Query: 289 LIEYLKN 295
           LIE LKN
Sbjct: 259 LIELLKN 265

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 14/153 (9%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFE-PLLLKHRLKVAMGI 181
           ++ H+ +++L     E PI  +V EY    +L D + G    +   P L+    ++A G+
Sbjct: 66  KLRHEKLVQLYAVVSEEPI-YIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGM 124
Query: 182 AHA--LAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG 239
           A+   + Y+H          +L +  IL  E  V K+ DF  +  I + E      ++F 
Sbjct: 125 AYVERMNYVHR---------DLRAANILVGENLVCKVADFGLARLIEDNEWTARQGAKFP 175
Query: 240 AWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
              ++APE    G F  K DV++F  +L EL T
Sbjct: 176 I-KWTAPEAALYGRFTIKSDVWSFGILLTELTT 207

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 19/164 (11%)
Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           + ++H +I+KL G  +  P P +V E+     L  R+     P    + L+  L +A+GI
Sbjct: 78  SNLNHPNIVKLYGL-MHNP-PRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGI 135
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFN--EENV---AKLFDFSESISIPEGETHIITRS 236
                Y+    P PIV  +L S  I     +EN    AK+ DFS S    +   H ++  
Sbjct: 136 E----YMQNQNP-PIVHRDLRSPNIFLQSLDENAPVCAKVADFSLS----QQSVHSVS-G 185
Query: 237 RFGAWTYSAPEY--KRGGVFNEKLDVYTFSTVLLELLTGQSTRD 278
             G + + APE        + EK D Y+F+ +L  +LTG+   D
Sbjct: 186 LLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFD 229

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 76/187 (40%), Gaps = 22/187 (11%)
Query: 124 MDHKHILKLIGCCLETPIP--ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           + H +I+K  G C         L+ EY  Y +LRD +    Q H E +     L+    I
Sbjct: 86  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTSQI 141
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG-ETHIITRSRFGA 240
              + YL     +  +  +L +  IL   EN  K+ DF  +  +P+  E   +       
Sbjct: 142 CKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESP 198
Query: 241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-----GQSTRDLLRTHGS-------VRH 288
             + APE      F+   DV++F  VL EL T          + +R  G+       V H
Sbjct: 199 IFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFH 258
Query: 289 LIEYLKN 295
           LIE LKN
Sbjct: 259 LIELLKN 265

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 8/150 (5%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIA 182
           ++ H  +++L G CLE     LVFE+ E+  L D +           LL   L V  G  
Sbjct: 56  KLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEG-- 113
Query: 183 HALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWT 242
             +AYL       ++  +L +   L  E  V K+ DF  +  + + +    T ++F    
Sbjct: 114 --MAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPV-K 167
Query: 243 YSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           +++PE      ++ K DV++F  ++ E+ +
Sbjct: 168 WASPEVFSFSRYSSKSDVWSFGVLMWEVFS 197

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIA 182
           ++ H  +++L G CLE     LVFE+ E+  L D +    +        +  L + + + 
Sbjct: 61  KLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYL----RTQRGLFAAETLLGMCLDVC 116
Query: 183 HALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWT 242
             +AYL       ++  +L +   L  E  V K+ DF  +  + + +    T ++F    
Sbjct: 117 EGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPV-K 172
Query: 243 YSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           +++PE      ++ K DV++F  ++ E+ +
Sbjct: 173 WASPEVFSFSRYSSKSDVWSFGVLMWEVFS 202

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIA 182
           ++ H  +++L G CLE     LVFE+ E+  L D +    +        +  L + + + 
Sbjct: 58  KLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYL----RTQRGLFAAETLLGMCLDVC 113
Query: 183 HALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWT 242
             +AYL       ++  +L +   L  E  V K+ DF  +  + + +    T ++F    
Sbjct: 114 EGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPV-K 169
Query: 243 YSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           +++PE      ++ K DV++F  ++ E+ +
Sbjct: 170 WASPEVFSFSRYSSKSDVWSFGVLMWEVFS 199

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 77/187 (41%), Gaps = 19/187 (10%)
Query: 97  ISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRD 156
           + VMK    + +   +  +  +     ++H ++LK IG   +      + EY +  TLR 
Sbjct: 37  VMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRG 96
Query: 157 RIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKL 216
            I      +        R+  A  IA  +AYLH      I+  +L S   L  E     +
Sbjct: 97  IIKSMDSQY----PWSQRVSFAKDIASGMAYLHS---MNIIHRDLNSHNCLVRENKNVVV 149
Query: 217 FDFS------ESISIPEGETHIITRSRFGAWT------YSAPEYKRGGVFNEKLDVYTFS 264
            DF       +  + PEG   +    R   +T      + APE   G  ++EK+DV++F 
Sbjct: 150 ADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFG 209
Query: 265 TVLLELL 271
            VL E++
Sbjct: 210 IVLCEII 216

>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase Domain (2p) In Complex With A Bis-Azaindole Inhibitor Length = 336

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 108/265 (40%), Gaps = 24/265 (9%)
Query: 38  RNGARVLKELI-ASSHGKY-NPYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQ-- 93
           RN +R+   ++ AS + +Y +   ++   E E+A       + + Q S   +Y+G  +  
Sbjct: 12  RNNSRLGNGVLYASVNPEYFSAADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGV 71
Query: 94  -----ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY 148
                E  +++   NE+ S       +N      + +  H+++L+G   +    +++ E 
Sbjct: 72  VKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMEL 131
Query: 149 GEYTTLRD-----RIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLIS 203
                L+      R      P   P  L   +++A  IA  +AYL+       V  +L +
Sbjct: 132 MTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAA 188
Query: 204 LCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTF 263
              +  E+   K+ DF  +  I E + +           + +PE  + GVF    DV++F
Sbjct: 189 RNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSF 248
Query: 264 STVLLELLT-------GQSTRDLLR 281
             VL E+ T       G S   +LR
Sbjct: 249 GVVLWEIATLAEQPYQGLSNEQVLR 273

>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains Length = 656

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 108/271 (39%), Gaps = 22/271 (8%)
Query: 11  FAVRPQPQMGSILTKFKDRTDKRTLMVRNGARVLKEL--IASSHGKYNPYRIFSAKELEI 68
           F +RPQ +    L       +     VR+    + E    A    + + Y + S ++ EI
Sbjct: 328 FIIRPQKEGERALPSIPKLANNEKQGVRSHTVSVSETDDYAEIIDEEDTYTMPSTRDYEI 387
Query: 69  ATNNYDERKFIKQDSTYKLYKGFWQE-----RLISVMKYNESYSDSACKFSINNIVYAAQ 123
                +  + I +     +++G +         +++       SDS  +  +   +   Q
Sbjct: 388 QRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQ 447
Query: 124 MDHKHILKLIGCCLETPIPILV--FEYGEYTT-LRDRIFGAPQPHFEPLLLKHRLKVAMG 180
            DH HI+KLIG   E P+ I++     GE  + L+ R F         L L   +  A  
Sbjct: 448 FDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKFS--------LDLASLILYAYQ 499
Query: 181 IAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA 240
           ++ ALAYL     +  V  ++ +  +L +  +  KL DF  S  + +   +  ++ +   
Sbjct: 500 LSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPI 556
Query: 241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELL 271
             + APE      F    DV+ F   + E+L
Sbjct: 557 -KWMAPESINFRRFTSASDVWMFGVCMWEIL 586

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 16/154 (10%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFE-PLLLKHRLKVAMGI 181
           ++ H+ +++L     E PI  +V EY    +L D + G    +   P L+    ++A G+
Sbjct: 318 KLRHEKLVQLYAVVSEEPI-YIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGM 376
Query: 182 AHA--LAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG 239
           A+   + Y+H          +L +  IL  E  V K+ DF  +  I + E      ++F 
Sbjct: 377 AYVERMNYVHR---------DLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFP 427
Query: 240 -AWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
             WT  APE    G F  K DV++F  +L EL T
Sbjct: 428 IKWT--APEAALYGRFTIKSDVWSFGILLTELTT 459

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 81/187 (43%), Gaps = 7/187 (3%)
Query: 86  KLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV 145
           ++Y+G W++  ++V            +  +       ++ H ++++L+G C   P   ++
Sbjct: 26  EVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 85
Query: 146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLC 205
            E+  Y  L D +    +     ++L   L +A  I+ A+ YL     +  +  +L +  
Sbjct: 86  TEFMTYGNLLDYLRECNRQEVSAVVL---LYMATQISSAMEYLE---KKNFIHRDLAARN 139
Query: 206 ILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFST 265
            L  E ++ K+ DF  S  +  G+T            ++APE      F+ K DV+ F  
Sbjct: 140 CLVGENHLVKVADFGLS-RLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGV 198
Query: 266 VLLELLT 272
           +L E+ T
Sbjct: 199 LLWEIAT 205

>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K641r Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Query: 108 DSACKFSINNIVYAAQM-----DHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAP 162
           D A +  ++++V   +M      HK+I+ L+G C +     ++ EY     LR+ +    
Sbjct: 77  DDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARR 136
Query: 163 QPHF-----------EPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE 211
            P             E +  K  +     +A  + YL     +  +  +L +  +L  E 
Sbjct: 137 PPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QKCIHRDLAARNVLVTEN 193
Query: 212 NVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELL 271
           NV ++ DF  +  I   + +  T +      + APE     V+  + DV++F  ++ E+ 
Sbjct: 194 NVMRIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIF 253
Query: 272 T 272
           T
Sbjct: 254 T 254

>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure Length = 309

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 85/216 (39%), Gaps = 27/216 (12%)
Query: 97  ISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY--GEYTTL 154
           I  M Y+   S+   +  I  + +  ++ H + ++  GC L      LV EY  G  + L
Sbjct: 45  IKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDL 104
Query: 155 RDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVG--FPRPIVFGNLISLCILFNEEN 212
                   + H +PL       V  G    LAYLH      R +  GN     IL +E  
Sbjct: 105 L-------EVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGN-----ILLSEPG 152
Query: 213 VAKLFDF-SESISIPEGETHIITRSRFGAWTYSAPEY---KRGGVFNEKLDVYTFSTVLL 268
           + KL DF S SI  P            G   + APE       G ++ K+DV++     +
Sbjct: 153 LVKLGDFGSASIMAP-------ANXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCI 205
Query: 269 ELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTE 304
           EL   +     +    ++ H+ +     LQ+  ++E
Sbjct: 206 ELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSE 241

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 14/153 (9%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFE-PLLLKHRLKVAMGI 181
           ++ H+ +++L     E PI I V EY    +L D + G    +   P L+    ++A G+
Sbjct: 66  KLRHEKLVQLYAVVSEEPIYI-VTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGM 124
Query: 182 AHA--LAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG 239
           A+   + Y+H          +L +  IL  E  V K+ DF  +  I + E      ++F 
Sbjct: 125 AYVERMNYVHR---------DLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFP 175
Query: 240 AWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
              ++APE    G F  K DV++F  +L EL T
Sbjct: 176 I-KWTAPEAALYGRFTIKSDVWSFGILLTELTT 207

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 14/153 (9%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFE-PLLLKHRLKVAMGI 181
           ++ H+ +++L     E PI I V EY    +L D + G    +   P L+    ++A G+
Sbjct: 69  KLRHEKLVQLYAVVSEEPIYI-VIEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGM 127
Query: 182 AHA--LAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG 239
           A+   + Y+H          +L +  IL  E  V K+ DF  +  I + E      ++F 
Sbjct: 128 AYVERMNYVHR---------DLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFP 178
Query: 240 AWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
              ++APE    G F  K DV++F  +L EL T
Sbjct: 179 I-KWTAPEAALYGRFTIKSDVWSFGILLTELTT 210

>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains. Length = 656

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 108/271 (39%), Gaps = 22/271 (8%)
Query: 11  FAVRPQPQMGSILTKFKDRTDKRTLMVRNGARVLKEL--IASSHGKYNPYRIFSAKELEI 68
           F +RPQ +    L       +     VR+    + E    A    + + Y + S ++ EI
Sbjct: 328 FIIRPQKEGERALPSIPKLANNEKQGVRSHTVSVSETDDYAEIIDEEDTYTMPSTRDYEI 387
Query: 69  ATNNYDERKFIKQDSTYKLYKGFWQE-----RLISVMKYNESYSDSACKFSINNIVYAAQ 123
                +  + I +     +++G +         +++       SDS  +  +   +   Q
Sbjct: 388 QRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQ 447
Query: 124 MDHKHILKLIGCCLETPIPILV--FEYGEYTT-LRDRIFGAPQPHFEPLLLKHRLKVAMG 180
            DH HI+KLIG   E P+ I++     GE  + L+ R F         L L   +  A  
Sbjct: 448 FDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKFS--------LDLASLILYAYQ 499
Query: 181 IAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA 240
           ++ ALAYL     +  V  ++ +  +L +  +  KL DF  S  + +   +  ++ +   
Sbjct: 500 LSTALAYLE---SKRFVHRDIAARNVLVSATDCVKLGDFGLSRYMEDSTYYKASKGKLPI 556
Query: 241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELL 271
             + APE      F    DV+ F   + E+L
Sbjct: 557 -KWMAPESINFRRFTSASDVWMFGVCMWEIL 586

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 14/153 (9%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFE-PLLLKHRLKVAMGI 181
           ++ H+ +++L     E PI I V EY    +L D + G    +   P L+    ++A G+
Sbjct: 69  KLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGM 127
Query: 182 AHA--LAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG 239
           A+   + Y+H          +L +  IL  E  V K+ DF  +  I + E      ++F 
Sbjct: 128 AYVERMNYVHR---------DLAAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFP 178
Query: 240 AWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
              ++APE    G F  K DV++F  +L EL T
Sbjct: 179 I-KWTAPEAALYGRFTIKSDVWSFGILLTELTT 210

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 76/187 (40%), Gaps = 22/187 (11%)
Query: 124 MDHKHILKLIGCCLETPIP--ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           + H +I+K  G C         L+ EY  Y +LRD +    Q H E +     L+    I
Sbjct: 68  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTSQI 123
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG-ETHIITRSRFGA 240
              + YL     +  +  +L +  IL   EN  K+ DF  +  +P+  E   +       
Sbjct: 124 CKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESP 180
Query: 241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-----GQSTRDLLRTHGS-------VRH 288
             + APE      F+   DV++F  VL EL T          + +R  G+       V H
Sbjct: 181 IFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFH 240
Query: 289 LIEYLKN 295
           LIE LKN
Sbjct: 241 LIELLKN 247

>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation And Specifity Of A Ste20p Map3k Length = 348

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 85/216 (39%), Gaps = 27/216 (12%)
Query: 97  ISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY--GEYTTL 154
           I  M Y+   S+   +  I  + +  ++ H + ++  GC L      LV EY  G  + L
Sbjct: 84  IKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDL 143
Query: 155 RDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVG--FPRPIVFGNLISLCILFNEEN 212
            +        H +PL       V  G    LAYLH      R +  GN     IL +E  
Sbjct: 144 LEV-------HKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGN-----ILLSEPG 191
Query: 213 VAKLFDF-SESISIPEGETHIITRSRFGAWTYSAPEY---KRGGVFNEKLDVYTFSTVLL 268
           + KL DF S SI  P            G   + APE       G ++ K+DV++     +
Sbjct: 192 LVKLGDFGSASIMAP-------ANXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCI 244
Query: 269 ELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTE 304
           EL   +     +    ++ H+ +     LQ+  ++E
Sbjct: 245 ELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSE 280

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 19/164 (11%)
Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           + ++H +I+KL G  +  P P +V E+     L  R+     P    + L+  L +A+GI
Sbjct: 78  SNLNHPNIVKLYGL-MHNP-PRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGI 135
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFN--EENV---AKLFDFSESISIPEGETHIITRS 236
                Y+    P PIV  +L S  I     +EN    AK+ DF  S    +   H ++  
Sbjct: 136 E----YMQNQNP-PIVHRDLRSPNIFLQSLDENAPVCAKVADFGTS----QQSVHSVS-G 185
Query: 237 RFGAWTYSAPEY--KRGGVFNEKLDVYTFSTVLLELLTGQSTRD 278
             G + + APE        + EK D Y+F+ +L  +LTG+   D
Sbjct: 186 LLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFD 229

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 81/187 (43%), Gaps = 7/187 (3%)
Query: 86  KLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV 145
           ++Y+G W++  ++V            +  +       ++ H ++++L+G C   P   ++
Sbjct: 26  EVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 85
Query: 146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLC 205
            E+  Y  L D +    +     ++L   L +A  I+ A+ YL     +  +  +L +  
Sbjct: 86  TEFMTYGNLLDYLRECNRQEVSAVVL---LYMATQISSAMEYLE---KKNFIHRDLAARN 139
Query: 206 ILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFST 265
            L  E ++ K+ DF  S  +  G+T            ++APE      F+ K DV+ F  
Sbjct: 140 CLVGENHLVKVADFGLS-RLMTGDTFTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGV 198
Query: 266 VLLELLT 272
           +L E+ T
Sbjct: 199 LLWEIAT 205

>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor (Igf-1r-Wt) Complex With Bms-754807 [1-(4-((5-Cyclopropyl- 1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2, 4]triazin-2-Yl)-N- (6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide] Length = 315

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 95/241 (39%), Gaps = 22/241 (9%)
Query: 60  IFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQ-------ERLISVMKYNESYSDSACK 112
           ++   E E+A       + + Q S   +Y+G  +       E  +++   NE+ S     
Sbjct: 7   VYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERI 66
Query: 113 FSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRD-----RIFGAPQPHFE 167
             +N      + +  H+++L+G   +    +++ E      L+      R      P   
Sbjct: 67  EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLA 126
Query: 168 PLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE 227
           P  L   +++A  IA  +AYL+       V  +L +   +  E+   K+ DF  +  I E
Sbjct: 127 PPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYE 183
Query: 228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-------GQSTRDLL 280
            + +           + +PE  + GVF    DV++F  VL E+ T       G S   +L
Sbjct: 184 TDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVL 243
Query: 281 R 281
           R
Sbjct: 244 R 244

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 14/153 (9%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFE-PLLLKHRLKVAMGI 181
           ++ H+ +++L     E PI I V EY    +L D + G    +   P L+    ++A G+
Sbjct: 62  KLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGM 120
Query: 182 AHA--LAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG 239
           A+   + Y+H          +L +  IL  E  V K+ DF  +  I + E      ++F 
Sbjct: 121 AYVERMNYVHR---------DLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFP 171
Query: 240 AWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
              ++APE    G F  K DV++F  +L EL T
Sbjct: 172 I-KWTAPEAALYGRFTIKSDVWSFGILLTELTT 203

>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth Factor-1 Receptor Kinase Domain Length = 322

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 95/241 (39%), Gaps = 22/241 (9%)
Query: 60  IFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQ-------ERLISVMKYNESYSDSACK 112
           ++   E E+A       + + Q S   +Y+G  +       E  +++   NE+ S     
Sbjct: 14  VYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERI 73
Query: 113 FSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRD-----RIFGAPQPHFE 167
             +N      + +  H+++L+G   +    +++ E      L+      R      P   
Sbjct: 74  EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLA 133
Query: 168 PLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE 227
           P  L   +++A  IA  +AYL+       V  +L +   +  E+   K+ DF  +  I E
Sbjct: 134 PPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYE 190
Query: 228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-------GQSTRDLL 280
            + +           + +PE  + GVF    DV++F  VL E+ T       G S   +L
Sbjct: 191 TDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVL 250
Query: 281 R 281
           R
Sbjct: 251 R 251

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 14/153 (9%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFE-PLLLKHRLKVAMGI 181
           ++ H+ +++L     E PI I V EY    +L D + G    +   P L+    ++A G+
Sbjct: 236 KLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGM 294
Query: 182 AHA--LAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG 239
           A+   + Y+H          +L +  IL  E  V K+ DF     I + E      ++F 
Sbjct: 295 AYVERMNYVHR---------DLRAANILVGENLVCKVADFGLGRLIEDNEYTARQGAKFP 345
Query: 240 AWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
              ++APE    G F  K DV++F  +L EL T
Sbjct: 346 I-KWTAPEAALYGRFTIKSDVWSFGILLTELTT 377

>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A Methanesulfonamide Diaminopyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 9/165 (5%)
Query: 107 SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHF 166
           SDS  +  +   +   Q DH HI+KLIG   E P+ I + E      LR  +    Q   
Sbjct: 48  SDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWI-IMELCTLGELRSFL----QVRK 102
Query: 167 EPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP 226
             L L   +  A  ++ ALAYL     +  V  ++ +  +L +  +  KL DF  S  + 
Sbjct: 103 YSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYME 159
Query: 227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELL 271
           +   +  ++ +     + APE      F    DV+ F   + E+L
Sbjct: 160 DSTYYKASKGKLPI-KWMAPESINFRRFTSASDVWMFGVCMWEIL 203

>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A Benzimidazole Inhibitor Length = 307

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 95/241 (39%), Gaps = 22/241 (9%)
Query: 60  IFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQ-------ERLISVMKYNESYSDSACK 112
           ++   E E+A       + + Q S   +Y+G  +       E  +++   NE+ S     
Sbjct: 7   VYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERI 66
Query: 113 FSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRD-----RIFGAPQPHFE 167
             +N      + +  H+++L+G   +    +++ E      L+      R      P   
Sbjct: 67  EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLA 126
Query: 168 PLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE 227
           P  L   +++A  IA  +AYL+       V  +L +   +  E+   K+ DF  +  I E
Sbjct: 127 PPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYE 183
Query: 228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-------GQSTRDLL 280
            + +           + +PE  + GVF    DV++F  VL E+ T       G S   +L
Sbjct: 184 TDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVL 243
Query: 281 R 281
           R
Sbjct: 244 R 244

>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor Kinase Length = 299

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 15/220 (6%)
Query: 65  ELEIATNNYDERKFIKQDSTYKLYKGFWQ-------ERLISVMKYNESYSDSACKFSINN 117
           E E+A       + + Q S   +Y+G  +       E  +++   NE+ S       +N 
Sbjct: 4   EWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNE 63
Query: 118 IVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRD-----RIFGAPQPHFEPLLLK 172
                + +  H+++L+G   +    +++ E      L+      R      P   P  L 
Sbjct: 64  ASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLS 123
Query: 173 HRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHI 232
             +++A  IA  +AYL+       V  +L +   +  E+   K+ DF  +  I E +   
Sbjct: 124 KMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIXETDXXR 180
Query: 233 ITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
                     + +PE  + GVF    DV++F  VL E+ T
Sbjct: 181 KGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIAT 220

>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And Kinase Domains Of Focal Adhesion Kinase. Length = 276

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 9/165 (5%)
Query: 107 SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHF 166
           SDS  +  +   +   Q DH HI+KLIG   E P+ I + E      LR  +    Q   
Sbjct: 51  SDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWI-IMELCTLGELRSFL----QVRK 105
Query: 167 EPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP 226
             L L   +  A  ++ ALAYL     +  V  ++ +  +L +  +  KL DF  S  + 
Sbjct: 106 YSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYME 162
Query: 227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELL 271
           +   +  ++ +     + APE      F    DV+ F   + E+L
Sbjct: 163 DSTYYKASKGKLPI-KWMAPESINFRRFTSASDVWMFGVCMWEIL 206

>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative Length = 281

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 9/165 (5%)
Query: 107 SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHF 166
           SDS  +  +   +   Q DH HI+KLIG   E P+ I + E      LR  +    Q   
Sbjct: 53  SDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWI-IMELCTLGELRSFL----QVRK 107
Query: 167 EPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP 226
             L L   +  A  ++ ALAYL     +  V  ++ +  +L +  +  KL DF  S  + 
Sbjct: 108 YSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYME 164
Query: 227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELL 271
           +   +  ++ +     + APE      F    DV+ F   + E+L
Sbjct: 165 DSTYYKASKGKLPI-KWMAPESINFRRFTSASDVWMFGVCMWEIL 208

>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Pyrrolo[2,3- D]thiazole Length = 282

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 9/165 (5%)
Query: 107 SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHF 166
           SDS  +  +   +   Q DH HI+KLIG   E P+ I + E      LR  +    Q   
Sbjct: 54  SDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWI-IMELCTLGELRSFL----QVRK 108
Query: 167 EPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP 226
             L L   +  A  ++ ALAYL     +  V  ++ +  +L +  +  KL DF  S  + 
Sbjct: 109 YSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYME 165
Query: 227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELL 271
           +   +  ++ +     + APE      F    DV+ F   + E+L
Sbjct: 166 DSTYYKASKGKLPI-KWMAPESINFRRFTSASDVWMFGVCMWEIL 209

>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 9/165 (5%)
Query: 107 SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHF 166
           SDS  +  +   +   Q DH HI+KLIG   E P+ I + E      LR  +    Q   
Sbjct: 51  SDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWI-IMELCTLGELRSFL----QVRK 105
Query: 167 EPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP 226
             L L   +  A  ++ ALAYL     +  V  ++ +  +L +  +  KL DF  S  + 
Sbjct: 106 YSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYME 162
Query: 227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELL 271
           +   +  ++ +     + APE      F    DV+ F   + E+L
Sbjct: 163 DSTYYKASKGKLPI-KWMAPESINFRRFTSASDVWMFGVCMWEIL 206

>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In Complex With Novel Allosteric Inhibitor Length = 304

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 9/165 (5%)
Query: 107 SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHF 166
           SDS  +  +   +   Q DH HI+KLIG   E P+ I + E      LR  +    Q   
Sbjct: 79  SDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWI-IMELCTLGELRSFL----QVRK 133
Query: 167 EPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP 226
             L L   +  A  ++ ALAYL     +  V  ++ +  +L +  +  KL DF  S  + 
Sbjct: 134 YSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYME 190
Query: 227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELL 271
           +   +  ++ +     + APE      F    DV+ F   + E+L
Sbjct: 191 DSTYYKASKGKLPI-KWMAPESINFRRFTSASDVWMFGVCMWEIL 234

>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak) Length = 281

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 9/165 (5%)
Query: 107 SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHF 166
           SDS  +  +   +   Q DH HI+KLIG   E P+ I + E      LR  +    Q   
Sbjct: 56  SDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWI-IMELCTLGELRSFL----QVRK 110
Query: 167 EPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP 226
             L L   +  A  ++ ALAYL     +  V  ++ +  +L +  +  KL DF  S  + 
Sbjct: 111 YSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYME 167
Query: 227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELL 271
           +   +  ++ +     + APE      F    DV+ F   + E+L
Sbjct: 168 DSTYYKASKGKLPI-KWMAPESINFRRFTSASDVWMFGVCMWEIL 211

>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092, Delete A660- T867) At 2.28 A Resolution Length = 299

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 14/126 (11%)
Query: 175 LKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS--ESISIPEGETHI 232
           L + + IA A+ +LH    + ++  +L    I F  ++V K+ DF    ++   E E  +
Sbjct: 121 LHIFLQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTV 177
Query: 233 IT--------RSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTR-DLLRTH 283
           +T          + G   Y +PE   G  ++ K+D+++   +L ELL   ST+ + +RT 
Sbjct: 178 LTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLYPFSTQMERVRTL 237
Query: 284 GSVRHL 289
             VR+L
Sbjct: 238 TDVRNL 243

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 14/153 (9%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFE-PLLLKHRLKVAMGI 181
           ++ H+ +++L     E PI I V EY     L D + G    +   P L+    ++A G+
Sbjct: 69  KLRHEKLVQLYAVVSEEPIYI-VMEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIASGM 127
Query: 182 AHA--LAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG 239
           A+   + Y+H          +L +  IL  E  V K+ DF  +  I + E      ++F 
Sbjct: 128 AYVERMNYVHR---------DLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFP 178
Query: 240 AWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
              ++APE    G F  K DV++F  +L EL T
Sbjct: 179 I-KWTAPEAALYGRFTIKSDVWSFGILLTELTT 210

>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And Kinase Domains Length = 361

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 107/249 (42%), Gaps = 23/249 (9%)
Query: 32  KRTLMVRNGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGF 91
           KRTL      R L E +  S    N   +   KE E     + + K +   +   +YKG 
Sbjct: 15  KRTLRRLLQERELVEPLTPSGEAPNQALLRILKETE-----FKKIKVLGSGAFGTVYKGL 69
Query: 92  W---QERL---ISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV 145
           W    E++   +++M+  E+ S  A K  ++     A +D+ H+ +L+G CL + +  L+
Sbjct: 70  WIPEGEKVKIPVAIMELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQ-LI 128
Query: 146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLC 205
            +   +  L D +    + H + +  ++ L   + IA  + YL     R +V  +L +  
Sbjct: 129 TQLMPFGCLLDYV----REHKDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARN 181
Query: 206 ILFNEENVAKLFDF--SESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTF 263
           +L       K+ DF  ++ +   E E H         W   A E     ++  + DV+++
Sbjct: 182 VLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM--ALESILHRIYTHQSDVWSY 239
Query: 264 STVLLELLT 272
              + EL+T
Sbjct: 240 GVTVWELMT 248

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 14/153 (9%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFE-PLLLKHRLKVAMGI 181
           ++ H+ +++L     E PI I V EY    +L D + G    +   P L+    ++A G+
Sbjct: 60  KLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGM 118
Query: 182 AHA--LAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG 239
           A+   + Y+H          +L +  IL  E  V K+ DF  +  I + E      ++F 
Sbjct: 119 AYVERMNYVHR---------DLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFP 169
Query: 240 AWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
              ++APE    G F  K DV++F  +L EL T
Sbjct: 170 I-KWTAPEAALYGRFTIKSDVWSFGILLTELTT 201

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 14/153 (9%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFE-PLLLKHRLKVAMGI 181
           ++ H+ +++L     E PI I V EY    +L D + G    +   P L+    ++A G+
Sbjct: 69  KLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGM 127
Query: 182 AHA--LAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG 239
           A+   + Y+H          +L +  IL  E  V K+ DF  +  I + E      ++F 
Sbjct: 128 AYVERMNYVHR---------DLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFP 178
Query: 240 AWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
              ++APE    G F  K DV++F  +L EL T
Sbjct: 179 I-KWTAPEAALYGRFTIKSDVWSFGILLTELTT 210

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 14/153 (9%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFE-PLLLKHRLKVAMGI 181
           ++ H+ +++L     E PI I V EY    +L D + G    +   P L+    ++A G+
Sbjct: 69  KLRHEKLVQLYAVVSEEPIYI-VCEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGM 127
Query: 182 AHA--LAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG 239
           A+   + Y+H          +L +  IL  E  V K+ DF  +  I + E      ++F 
Sbjct: 128 AYVERMNYVHR---------DLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFP 178
Query: 240 AWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
              ++APE    G F  K DV++F  +L EL T
Sbjct: 179 I-KWTAPEAALYGRFTIKSDVWSFGILLTELTT 210

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 14/153 (9%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFE-PLLLKHRLKVAMGI 181
           ++ H+ +++L     E PI  +V EY    +L D + G    +   P L+    ++A G+
Sbjct: 58  KLRHEKLVQLYAVVSEEPI-YIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGM 116
Query: 182 AHA--LAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG 239
           A+   + Y+H          +L +  IL  E  V K+ DF  +  I + E      ++F 
Sbjct: 117 AYVERMNYVHR---------DLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFP 167
Query: 240 AWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
              ++APE    G F  K DV++F  +L EL T
Sbjct: 168 I-KWTAPEAALYGRFTIKSDVWSFGILLTELTT 199

>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human Chk1 Kinase Domain Length = 273

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 15/159 (9%)
Query: 124 MDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRI---FGAPQPHFEPLLLKHRLKVAMG 180
           ++H++++K  G   E  I  L  EY     L DRI    G P+P  +     H+L   + 
Sbjct: 61  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 118
Query: 181 IAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA 240
             H +   H    R I   NL     L +E +  K+ DF  +          +     G 
Sbjct: 119 YLHGIGITH----RDIKPENL-----LLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 169
Query: 241 WTYSAPE-YKRGGVFNEKLDVYTFSTVLLELLTGQSTRD 278
             Y APE  KR     E +DV++   VL  +L G+   D
Sbjct: 170 LPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWD 208

>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 15/159 (9%)
Query: 124 MDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRI---FGAPQPHFEPLLLKHRLKVAMG 180
           ++H++++K  G   E  I  L  EY     L DRI    G P+P  +     H+L   + 
Sbjct: 61  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 118
Query: 181 IAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA 240
             H +   H    R I   NL     L +E +  K+ DF  +          +     G 
Sbjct: 119 YLHGIGITH----RDIKPENL-----LLDERDNLKISDFGLATVFRYNNRERLLNKMXGT 169
Query: 241 WTYSAPE-YKRGGVFNEKLDVYTFSTVLLELLTGQSTRD 278
             Y APE  KR     E +DV++   VL  +L G+   D
Sbjct: 170 LPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWD 208

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 19/164 (11%)
Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           + ++H +I+KL G  +  P P +V E+     L  R+     P    + L+  L +A+GI
Sbjct: 78  SNLNHPNIVKLYGL-MHNP-PRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGI 135
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFN--EENV---AKLFDFSESISIPEGETHIITRS 236
                Y+    P PIV  +L S  I     +EN    AK+ DF  S    +   H ++  
Sbjct: 136 E----YMQNQNP-PIVHRDLRSPNIFLQSLDENAPVCAKVADFGLS----QQSVHSVS-G 185
Query: 237 RFGAWTYSAPEY--KRGGVFNEKLDVYTFSTVLLELLTGQSTRD 278
             G + + APE        + EK D Y+F+ +L  +LTG+   D
Sbjct: 186 LLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFD 229

>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint Kinase Inhibitors - Hit To Lead Exploration Length = 276

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 65/165 (39%), Gaps = 15/165 (9%)
Query: 118 IVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRI---FGAPQPHFEPLLLKHR 174
           I     ++H++++K  G   E  I  L  EY     L DRI    G P+P  +     H+
Sbjct: 56  ICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQ 113
Query: 175 LKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIIT 234
           L   +   H +   H    R I   NL     L +E +  K+ DF  +          + 
Sbjct: 114 LMAGVVYLHGIGITH----RDIKPENL-----LLDERDNLKISDFGLATVFRYNNRERLL 164
Query: 235 RSRFGAWTYSAPE-YKRGGVFNEKLDVYTFSTVLLELLTGQSTRD 278
               G   Y APE  KR     E +DV++   VL  +L G+   D
Sbjct: 165 NKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWD 209

>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By Structure Based Design And Optimization Of Thiophene Carboxamide Ureas Length = 276

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 15/159 (9%)
Query: 124 MDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRI---FGAPQPHFEPLLLKHRLKVAMG 180
           ++H++++K  G   E  I  L  EY     L DRI    G P+P  +     H+L   + 
Sbjct: 62  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 119
Query: 181 IAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA 240
             H +   H    R I   NL     L +E +  K+ DF  +          +     G 
Sbjct: 120 YLHGIGITH----RDIKPENL-----LLDERDNLKISDFGLATVFRYNNRERLLNKMXGT 170
Query: 241 WTYSAPE-YKRGGVFNEKLDVYTFSTVLLELLTGQSTRD 278
             Y APE  KR     E +DV++   VL  +L G+   D
Sbjct: 171 LPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWD 209

>pdb|4FST|A Chain A, Crystal Structure Of The Chk1 Length = 269

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 15/159 (9%)
Query: 124 MDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRI---FGAPQPHFEPLLLKHRLKVAMG 180
           ++H++++K  G   E  I  L  EY     L DRI    G P+P  +     H+L   + 
Sbjct: 61  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 118
Query: 181 IAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA 240
             H +   H    R I   NL     L +E +  K+ DF  +          +     G 
Sbjct: 119 YLHGIGITH----RDIKPENL-----LLDERDNLKISDFGLATVFRYNNRERLLNKMXGT 169
Query: 241 WTYSAPE-YKRGGVFNEKLDVYTFSTVLLELLTGQSTRD 278
             Y APE  KR     E +DV++   VL  +L G+   D
Sbjct: 170 LPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWD 208

>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1 Length = 278

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 15/159 (9%)
Query: 124 MDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRI---FGAPQPHFEPLLLKHRLKVAMG 180
           ++H++++K  G   E  I  L  EY     L DRI    G P+P  +     H+L   + 
Sbjct: 60  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 117
Query: 181 IAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA 240
             H +   H    R I   NL     L +E +  K+ DF  +          +     G 
Sbjct: 118 YLHGIGITH----RDIKPENL-----LLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 168
Query: 241 WTYSAPE-YKRGGVFNEKLDVYTFSTVLLELLTGQSTRD 278
             Y APE  KR     E +DV++   VL  +L G+   D
Sbjct: 169 LPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWD 207

>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017 Length = 268

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 65/165 (39%), Gaps = 15/165 (9%)
Query: 118 IVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRI---FGAPQPHFEPLLLKHR 174
           I     ++H++++K  G   E  I  L  EY     L DRI    G P+P  +     H+
Sbjct: 55  ICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQ 112
Query: 175 LKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIIT 234
           L   +   H +   H    R I   NL     L +E +  K+ DF  +          + 
Sbjct: 113 LMAGVVYLHGIGITH----RDIKPENL-----LLDERDNLKISDFGLATVFRYNNRERLL 163
Query: 235 RSRFGAWTYSAPE-YKRGGVFNEKLDVYTFSTVLLELLTGQSTRD 278
               G   Y APE  KR     E +DV++   VL  +L G+   D
Sbjct: 164 NKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWD 208

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 14/153 (9%)
Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFE-PLLLKHRLKVAMGI 181
           ++ H+ +++L     E PI I V EY    +L D + G    +   P L+    ++A G+
Sbjct: 69  KIRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGM 127
Query: 182 AHA--LAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG 239
           A+   + Y+H          +L +  IL  E  V K+ DF  +  I + E      ++F 
Sbjct: 128 AYVERMNYVHR---------DLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFP 178
Query: 240 AWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
              ++APE    G F  K DV++F  +L EL T
Sbjct: 179 I-KWTAPEAALYGRFTIKSDVWSFGILLTELTT 210

>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 15/159 (9%)
Query: 124 MDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRI---FGAPQPHFEPLLLKHRLKVAMG 180
           ++H++++K  G   E  I  L  EY     L DRI    G P+P  +     H+L   + 
Sbjct: 61  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 118
Query: 181 IAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA 240
             H +   H    R I   NL     L +E +  K+ DF  +          +     G 
Sbjct: 119 YLHGIGITH----RDIKPENL-----LLDERDNLKISDFGLATVFRYNNRERLLNKMXGT 169
Query: 241 WTYSAPE-YKRGGVFNEKLDVYTFSTVLLELLTGQSTRD 278
             Y APE  KR     E +DV++   VL  +L G+   D
Sbjct: 170 LPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWD 208

>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 15/159 (9%)
Query: 124 MDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRI---FGAPQPHFEPLLLKHRLKVAMG 180
           ++H++++K  G   E  I  L  EY     L DRI    G P+P  +     H+L   + 
Sbjct: 61  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 118
Query: 181 IAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA 240
             H +   H    R I   NL     L +E +  K+ DF  +          +     G 
Sbjct: 119 YLHGIGITH----RDIKPENL-----LLDERDNLKISDFGLATVFRYNNRERLLNKMXGT 169
Query: 241 WTYSAPE-YKRGGVFNEKLDVYTFSTVLLELLTGQSTRD 278
             Y APE  KR     E +DV++   VL  +L G+   D
Sbjct: 170 LPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWD 208

>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994 Length = 269

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 65/165 (39%), Gaps = 15/165 (9%)
Query: 118 IVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRI---FGAPQPHFEPLLLKHR 174
           I     ++H++++K  G   E  I  L  EY     L DRI    G P+P  +     H+
Sbjct: 55  ICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQ 112
Query: 175 LKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIIT 234
           L   +   H +   H    R I   NL     L +E +  K+ DF  +          + 
Sbjct: 113 LMAGVVYLHGIGITH----RDIKPENL-----LLDERDNLKISDFGLATVFRYNNRERLL 163
Query: 235 RSRFGAWTYSAPE-YKRGGVFNEKLDVYTFSTVLLELLTGQSTRD 278
               G   Y APE  KR     E +DV++   VL  +L G+   D
Sbjct: 164 NKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWD 208

>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 15/159 (9%)
Query: 124 MDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRI---FGAPQPHFEPLLLKHRLKVAMG 180
           ++H++++K  G   E  I  L  EY     L DRI    G P+P  +     H+L   + 
Sbjct: 61  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 118
Query: 181 IAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA 240
             H +   H    R I   NL     L +E +  K+ DF  +          +     G 
Sbjct: 119 YLHGIGITH----RDIKPENL-----LLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 169
Query: 241 WTYSAPE-YKRGGVFNEKLDVYTFSTVLLELLTGQSTRD 278
             Y APE  KR     E +DV++   VL  +L G+   D
Sbjct: 170 LPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWD 208

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 23/175 (13%)
Query: 123 QMDHKHILKLIGCCLE-TPIPILV--FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAM 179
           Q  H +I++LIG C +  PI I++   + G++ T   R  GA       L +K  L++  
Sbjct: 168 QYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFL-RTEGAR------LRVKTLLQMVG 220
Query: 180 GIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG 239
             A  + YL     +  +  +L +   L  E+NV K+ DF  S    +G        R  
Sbjct: 221 DAAAGMEYLE---SKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVXAASGGLRQV 277
Query: 240 AWTYSAPEYKRGGVFNEKLDVYTFSTVLLEL----------LTGQSTRDLLRTHG 284
              ++APE    G ++ + DV++F  +L E           L+ Q TR+ +   G
Sbjct: 278 PVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVEKGG 332

>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding Site Length = 271

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 15/159 (9%)
Query: 124 MDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRI---FGAPQPHFEPLLLKHRLKVAMG 180
           ++H++++K  G   E  I  L  EY     L DRI    G P+P  +     H+L   + 
Sbjct: 61  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 118
Query: 181 IAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA 240
             H +   H    R I   NL     L +E +  K+ DF  +          +     G 
Sbjct: 119 YLHGIGITH----RDIKPENL-----LLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 169
Query: 241 WTYSAPE-YKRGGVFNEKLDVYTFSTVLLELLTGQSTRD 278
             Y APE  KR     E +DV++   VL  +L G+   D
Sbjct: 170 LPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWD 208

>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 15/159 (9%)
Query: 124 MDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRI---FGAPQPHFEPLLLKHRLKVAMG 180
           ++H++++K  G   E  I  L  EY     L DRI    G P+P  +     H+L   + 
Sbjct: 61  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 118
Query: 181 IAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA 240
             H +   H    R I   NL     L +E +  K+ DF  +          +     G 
Sbjct: 119 YLHGIGITH----RDIKPENL-----LLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 169
Query: 241 WTYSAPE-YKRGGVFNEKLDVYTFSTVLLELLTGQSTRD 278
             Y APE  KR     E +DV++   VL  +L G+   D
Sbjct: 170 LPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWD 208

>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor Length = 269

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 15/159 (9%)
Query: 124 MDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRI---FGAPQPHFEPLLLKHRLKVAMG 180
           ++H++++K  G   E  I  L  EY     L DRI    G P+P  +     H+L   + 
Sbjct: 62  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 119
Query: 181 IAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA 240
             H +   H    R I   NL     L +E +  K+ DF  +          +     G 
Sbjct: 120 YLHGIGITH----RDIKPENL-----LLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 170
Query: 241 WTYSAPE-YKRGGVFNEKLDVYTFSTVLLELLTGQSTRD 278
             Y APE  KR     E +DV++   VL  +L G+   D
Sbjct: 171 LPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWD 209

>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo Pyridine Inhibitor Length = 317

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 75/184 (40%), Gaps = 8/184 (4%)
Query: 94  ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTT 153
           E  ++V   NES S       +N           H+++L+G   +    ++V E   +  
Sbjct: 46  ETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGD 105
Query: 154 LRD-----RIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILF 208
           L+      R      P   P  L+  +++A  IA  +AYL+    +  V  +L +   + 
Sbjct: 106 LKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNA---KKFVHRDLAARNCMV 162
Query: 209 NEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLL 268
             +   K+ DF  +  I E + +           + APE  + GVF    D+++F  VL 
Sbjct: 163 AHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLW 222
Query: 269 ELLT 272
           E+ +
Sbjct: 223 EITS 226

>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The Kinase Domain Of Focal Adhesion Kinase With A Phosphorylated Activation Loop Length = 276

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 15/178 (8%)
Query: 97  ISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV--FEYGEYTT- 153
           +++       SDS  +  +   +   Q DH HI+KLIG   E P+ I++     GE  + 
Sbjct: 41  VAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSF 100
Query: 154 LRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENV 213
           L+ R F         L L   +  A  ++ ALAYL     +  V  ++ +  +L +  + 
Sbjct: 101 LQVRKFS--------LDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDC 149
Query: 214 AKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELL 271
            KL DF  S  + +      ++ +     + APE      F    DV+ F   + E+L
Sbjct: 150 VKLGDFGLSRYMEDSTXXKASKGKLPI-KWMAPESINFRRFTSASDVWMFGVCMWEIL 206

>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 15/159 (9%)
Query: 124 MDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRI---FGAPQPHFEPLLLKHRLKVAMG 180
           ++H++++K  G   E  I  L  EY     L DRI    G P+P  +     H+L   + 
Sbjct: 61  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 118
Query: 181 IAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA 240
             H +   H    R I   NL     L +E +  K+ DF  +          +     G 
Sbjct: 119 YLHGIGITH----RDIKPENL-----LLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 169
Query: 241 WTYSAPE-YKRGGVFNEKLDVYTFSTVLLELLTGQSTRD 278
             Y APE  KR     E +DV++   VL  +L G+   D
Sbjct: 170 LPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWD 208

>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565a Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 74/181 (40%), Gaps = 19/181 (10%)
Query: 108 DSACKFSINNIVYAAQM-----DHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAP 162
           D A +  ++++V   +M      HK+I+ L+G C +     ++  Y     LR+ +    
Sbjct: 77  DDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVAYASKGNLREYLRARR 136
Query: 163 QPHF-----------EPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE 211
            P             E +  K  +     +A  + YL     +  +  +L +  +L  E 
Sbjct: 137 PPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QKCIHRDLAARNVLVTEN 193
Query: 212 NVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELL 271
           NV K+ DF  +  I   + +  T +      + APE     V+  + DV++F  ++ E+ 
Sbjct: 194 NVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIF 253
Query: 272 T 272
           T
Sbjct: 254 T 254

>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1 Receptor Kinase In Complex With Pqip Length = 301

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 94/241 (39%), Gaps = 22/241 (9%)
Query: 60  IFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQ-------ERLISVMKYNESYSDSACK 112
           ++   E E+A       + + Q S   +Y+G  +       E  +++   NE+ S     
Sbjct: 1   VYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERI 60
Query: 113 FSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRD-----RIFGAPQPHFE 167
             +N      + +  H+++L+G   +    +++ E      L+      R      P   
Sbjct: 61  EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLA 120
Query: 168 PLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE 227
           P  L   +++A  IA  +AYL+       V  +L +      E+   K+ DF  +  I E
Sbjct: 121 PPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCXVAEDFTVKIGDFGMTRDIYE 177
Query: 228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-------GQSTRDLL 280
            + +           + +PE  + GVF    DV++F  VL E+ T       G S   +L
Sbjct: 178 TDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVL 237
Query: 281 R 281
           R
Sbjct: 238 R 238

>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With Pyrimidine 8 Length = 301

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/236 (21%), Positives = 93/236 (39%), Gaps = 22/236 (9%)
Query: 65  ELEIATNNYDERKFIKQDSTYKLYKGFWQ-------ERLISVMKYNESYSDSACKFSINN 117
           E E+A       + + Q S   +Y+G  +       E  +++   NE+ S       +N 
Sbjct: 6   EWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNE 65
Query: 118 IVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRD-----RIFGAPQPHFEPLLLK 172
                + +  H+++L+G   +    +++ E      L+      R      P   P  L 
Sbjct: 66  ASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLS 125
Query: 173 HRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHI 232
             +++A  IA  +AYL+       V  +L +   +  E+   K+ DF  +  I E + + 
Sbjct: 126 KMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYR 182
Query: 233 ITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-------GQSTRDLLR 281
                     + +PE  + GVF    DV++F  VL E+ T       G S   +LR
Sbjct: 183 KGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLR 238

>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 15/168 (8%)
Query: 107 SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV--FEYGEYTT-LRDRIFGAPQ 163
           SDS  +  +   +   Q DH HI+KLIG   E P+ I++     GE  + L+ R F    
Sbjct: 51  SDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKFS--- 107
Query: 164 PHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI 223
                L L   +  A  ++ ALAYL     +  V  ++ +  +L +  +  KL DF  S 
Sbjct: 108 -----LDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSATDCVKLGDFGLSR 159
Query: 224 SIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELL 271
            + +   +  ++ +     + APE      F    DV+ F   + E+L
Sbjct: 160 YMEDSTYYKASKGKLPI-KWMAPESINFRRFTSASDVWMFGVCMWEIL 206

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 12/149 (8%)
Query: 123 QMDHKHILKLIGCCLETPIPI-LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           Q+ H ++++L+G  +E    + +V EY    +L D +    +       L   LK ++ +
Sbjct: 61  QLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCL---LKFSLDV 117
Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAW 241
             A+ YL        V  +L +  +L +E+NVAK+ DF  +    E  +   T      W
Sbjct: 118 CEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLT---KEASSTQDTGKLPVKW 171
Query: 242 TYSAPEYKRGGVFNEKLDVYTFSTVLLEL 270
           T  APE  R   F+ K DV++F  +L E+
Sbjct: 172 T--APEALREAAFSTKSDVWSFGILLWEI 198

>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights Into Hydrogen Bonding And Protein-Ligand Affinity Length = 297

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 15/159 (9%)
Query: 124 MDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRI---FGAPQPHFEPLLLKHRLKVAMG 180
           ++H++++K  G   E  I  L  EY     L DRI    G P+P  +     H+L   + 
Sbjct: 62  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 119
Query: 181 IAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA 240
             H +   H    R I   NL     L +E +  K+ DF  +          +     G 
Sbjct: 120 YLHGIGITH----RDIKPENL-----LLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 170
Query: 241 WTYSAPE-YKRGGVFNEKLDVYTFSTVLLELLTGQSTRD 278
             Y APE  KR     E +DV++   VL  +L G+   D
Sbjct: 171 LPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWD 209

>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint Kinase Chk1 Length = 289

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 15/159 (9%)
Query: 124 MDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRI---FGAPQPHFEPLLLKHRLKVAMG 180
           ++H++++K  G   E  I  L  EY     L DRI    G P+P  +     H+L   + 
Sbjct: 62  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 119
Query: 181 IAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA 240
             H +   H    R I   NL     L +E +  K+ DF  +          +     G 
Sbjct: 120 YLHGIGITH----RDIKPENL-----LLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 170
Query: 241 WTYSAPE-YKRGGVFNEKLDVYTFSTVLLELLTGQSTRD 278
             Y APE  KR     E +DV++   VL  +L G+   D
Sbjct: 171 LPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWD 209

>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine Analog Length = 295

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 15/159 (9%)
Query: 124 MDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRI---FGAPQPHFEPLLLKHRLKVAMG 180
           ++H++++K  G   E  I  L  EY     L DRI    G P+P  +     H+L   + 
Sbjct: 62  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 119
Query: 181 IAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA 240
             H +   H    R I   NL     L +E +  K+ DF  +          +     G 
Sbjct: 120 YLHGIGITH----RDIKPENL-----LLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 170
Query: 241 WTYSAPE-YKRGGVFNEKLDVYTFSTVLLELLTGQSTRD 278
             Y APE  KR     E +DV++   VL  +L G+   D
Sbjct: 171 LPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWD 209

>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20 Length = 322

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 15/159 (9%)
Query: 124 MDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRI---FGAPQPHFEPLLLKHRLKVAMG 180
           ++H++++K  G   E  I  L  EY     L DRI    G P+P  +     H+L   + 
Sbjct: 61  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 118
Query: 181 IAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA 240
             H +   H    R I   NL     L +E +  K+ DF  +          +     G 
Sbjct: 119 YLHGIGITH----RDIKPENL-----LLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 169
Query: 241 WTYSAPE-YKRGGVFNEKLDVYTFSTVLLELLTGQSTRD 278
             Y APE  KR     E +DV++   VL  +L G+   D
Sbjct: 170 LPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWD 208

>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54 Length = 323

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 15/159 (9%)
Query: 124 MDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRI---FGAPQPHFEPLLLKHRLKVAMG 180
           ++H++++K  G   E  I  L  EY     L DRI    G P+P  +     H+L   + 
Sbjct: 62  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 119
Query: 181 IAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA 240
             H +   H    R I   NL     L +E +  K+ DF  +          +     G 
Sbjct: 120 YLHGIGITH----RDIKPENL-----LLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 170
Query: 241 WTYSAPE-YKRGGVFNEKLDVYTFSTVLLELLTGQSTRD 278
             Y APE  KR     E +DV++   VL  +L G+   D
Sbjct: 171 LPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWD 209

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	338
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	6e-47
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	3e-42
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	6e-40
3soc_A	322	Activin receptor type-2A; structural genomics cons	2e-29
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	7e-23
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	3e-22
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	1e-21
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	6e-21
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	8e-21
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	1e-19
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	5e-19
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	1e-18
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	7e-18
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	1e-17
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	3e-17
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	4e-17
3q4u_A	301	Activin receptor type-1; structural genomics conso	5e-17
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	1e-16
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	6e-12
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	8e-12
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	2e-11
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	8e-11
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	9e-11
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	9e-11
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	1e-10
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	1e-10
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	1e-10
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	2e-10
3pls_A	298	Macrophage-stimulating protein receptor; protein k	3e-10
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	3e-10
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	4e-10
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	4e-10
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	5e-10
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	6e-10
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	8e-10
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	8e-10
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	9e-10
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	1e-09
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	2e-09
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	2e-09
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	2e-09
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	2e-09
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	3e-09
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	3e-09
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	4e-09
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	4e-09
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	6e-09
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	6e-09
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	7e-09
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	7e-09
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	8e-09
4aoj_A	329	High affinity nerve growth factor receptor; transf	8e-09
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	9e-09
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	9e-09
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	1e-08
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	1e-08
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	1e-08
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	2e-08
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	2e-08
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	2e-08
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	2e-08
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	4e-08
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	4e-08
3ork_A	311	Serine/threonine protein kinase; structural genomi	6e-08
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	1e-07
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	1e-07
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	1e-07
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	1e-07
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	3e-07
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	3e-07
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	3e-07
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	1e-06
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	3e-06
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	7e-06
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	8e-06
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	1e-05
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	1e-05
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	5e-05
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	1e-04
3uqc_A	286	Probable conserved transmembrane protein; structur	1e-04
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	2e-04
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	2e-04
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	2e-04
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	4e-04
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	5e-04

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  160 bits (407), Expect = 6e-47
 Identities = 83/304 (27%), Positives = 136/304 (44%), Gaps = 17/304 (5%)

Query: 39  NGARVLKELIASSHGKYNPYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQE-RLI 97
                + + ++SS+            +LE ATNN+D +  I      K+YKG  ++   +
Sbjct: 7   KATNSINDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKV 66

Query: 98  SVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDR 157
           ++ +     S    +F    I   +   H H++ LIG C E    IL+++Y E   L+  
Sbjct: 67  ALKRRTPESSQGIEEF-ETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRH 125

Query: 158 IFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLF 217
           ++G+  P    +  + RL++ +G A  L YLH      I+  ++ S+ IL +E  V K+ 
Sbjct: 126 LYGSDLPT-MSMSWEQRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENFVPKIT 181

Query: 218 DFSESISIPEG-ETHIITRSR--FGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
           DF  S    E  +TH+ T  +   G   Y  PEY   G   EK DVY+F  VL E+L  +
Sbjct: 182 DFGISKKGTELDQTHLSTVVKGTLG---YIDPEYFIKGRLTEKSDVYSFGVVLFEVLCAR 238

Query: 275 STRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECL 334
           S          V +L E+      N +  +I DP +   +   E+  +F   A   ++CL
Sbjct: 239 SAIVQSLPREMV-NLAEWAVESHNNGQLEQIVDPNLADKIR-PESLRKFGDTA---VKCL 293

Query: 335 NESP 338
             S 
Sbjct: 294 ALSS 297

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  148 bits (375), Expect = 3e-42
 Identities = 80/289 (27%), Positives = 135/289 (46%), Gaps = 22/289 (7%)

Query: 59  RIFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQE-RLISVMKYNESYSDSACK--F-- 113
           + FS +EL++A++N+  +  + +    K+YKG   +  L++V K  +       +  F  
Sbjct: 18  KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAV-KRLKEERTQGGELQFQT 76

Query: 114 ---SINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLL 170
               I+  V      H+++L+L G C+     +LV+ Y    ++   +   P     PL 
Sbjct: 77  EVEMISMAV------HRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERP-ESQPPLD 129

Query: 171 LKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGET 230
              R ++A+G A  LAYLH      I+  ++ +  IL +EE  A + DF  +  +   +T
Sbjct: 130 WPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDT 189

Query: 231 HIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHG-SVRHL 289
           H+ T  R G   + APEY   G  +EK DV+ +  +LLEL+TGQ   DL R        L
Sbjct: 190 HVTTAVR-GTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVML 248

Query: 290 IEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP 338
           ++++K  L+  +   + D  +  +    E E Q    A L   C   SP
Sbjct: 249 LDWVKGLLKEKKLEALVDVDLQGNYKDEEVE-QLIQVALL---CTQSSP 293

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  141 bits (359), Expect = 6e-40
 Identities = 71/296 (23%), Positives = 120/296 (40%), Gaps = 36/296 (12%)

Query: 59  RIFSAKELEIATNNYDERKFIKQDSTYKL--------YKGFWQERLISVMKYNESYSDSA 110
             FS  EL+  TNN+DER      +  K+        YKG+     ++V K       + 
Sbjct: 13  HSFSFYELKNVTNNFDERPISVGGN--KMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITT 70

Query: 111 CK----FSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHF 166
            +    F    I   A+  H+++++L+G   +     LV+ Y    +L DR+        
Sbjct: 71  EELKQQF-DQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGT-- 127

Query: 167 EPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP 226
            PL    R K+A G A+ + +LH       +  ++ S  IL +E   AK+ DF  + +  
Sbjct: 128 PPLSWHMRCKIAQGAANGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASE 184

Query: 227 EGE-THIITRSR--FGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTH 283
           +   T + +R         Y APE  RG     K D+Y+F  VLLE++TG    D  R  
Sbjct: 185 KFAQTVMTSRIVGTTA---YMAPEALRGE-ITPKSDIYSFGVVLLEIITGLPAVDEHREP 240

Query: 284 GSVRHLIEYLKNYLQNNR-FTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP 338
              + L++  +      +   +  D  +             +A   +  +CL+E  
Sbjct: 241 ---QLLLDIKEEIEDEEKTIEDYIDKKMND-----ADSTSVEAMYSVASQCLHEKK 288

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  114 bits (286), Expect = 2e-29
 Identities = 49/300 (16%), Positives = 93/300 (31%), Gaps = 35/300 (11%)

Query: 61  FSAKELEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVY 120
              + L   +      +   +     ++K       ++V  +     D     +   +  
Sbjct: 14  LGTENLYFQSMPLQLLEVKARGRFGCVWKAQLLNEYVAVKIF--PIQDKQSWQNEYEVYS 71

Query: 121 AAQMDHKHILKLIGCCLETPIP----ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLK 176
              M H++IL+ IG             L+  + E  +L D +          +       
Sbjct: 72  LPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFL------KANVVSWNELCH 125

Query: 177 VAMGIAHALAYLHVGFPR-------PIVFGNLISLCILFNEENVAKLFDFSESISIPEGE 229
           +A  +A  LAYLH   P         I   ++ S  +L      A + DF  ++    G+
Sbjct: 126 IAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGK 185

Query: 230 THIITRSRFGAWTYSAPEYKRGGV-----FNEKLDVYTFSTVLLELLTGQSTRDLLRTHG 284
           +   T  + G   Y APE   G +        ++D+Y    VL EL +  +  D     G
Sbjct: 186 SAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAAD-----G 240

Query: 285 SVRHLIEYLKNYLQNNRFTEIADPIIVQDL------SCTETEHQFQACARLTLECLNESP 338
            V   +   +  +  +   E    ++V            +             EC +   
Sbjct: 241 PVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDA 300

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 96.4 bits (240), Expect = 7e-23
 Identities = 53/308 (17%), Positives = 100/308 (32%), Gaps = 40/308 (12%)

Query: 61  FSAKELEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVY 120
            +A E  +  +N    + I +     +YKG   ER ++V  ++ +   +       NI  
Sbjct: 3   AAASEPSLDLDNLKLLELIGRGRYGAVYKGSLDERPVAVKVFSFANRQNFINEK--NIYR 60

Query: 121 AAQMDHKHILKLIGCCLETPIPI-----LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRL 175
              M+H +I + I               LV EY    +L   +                 
Sbjct: 61  VPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYL------SLHTSDWVSSC 114

Query: 176 KVAMGIAHALAYLHVGFPR------PIVFGNLISLCILFNEENVAKLFDF------SESI 223
           ++A  +   LAYLH   PR       I   +L S  +L   +    + DF      + + 
Sbjct: 115 RLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNR 174

Query: 224 SIPEGETHIITRSRFGAWTYSAPEYKRGGV-------FNEKLDVYTFSTVLLELLTGQST 276
            +  GE      S  G   Y APE   G V         +++D+Y    +  E+      
Sbjct: 175 LVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMR--C 232

Query: 277 RDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDL------SCTETEHQFQACARLT 330
            DL        + + +      +  F ++   +  +        +  E     ++     
Sbjct: 233 TDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETI 292

Query: 331 LECLNESP 338
            +C ++  
Sbjct: 293 EDCWDQDA 300

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 94.3 bits (235), Expect = 3e-22
 Identities = 52/214 (24%), Positives = 95/214 (44%), Gaps = 6/214 (2%)

Query: 62  SAKELEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYN-ESYSDSACKFSINNIVY 120
              +++I   + + ++ I   S   +++  W    ++V     + +        +  +  
Sbjct: 28  DGDDMDIPWCDLNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAI 87

Query: 121 AAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMG 180
             ++ H +I+  +G   + P   +V EY    +L   +  +     E L  + RL +A  
Sbjct: 88  MKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAR--EQLDERRRLSMAYD 145

Query: 181 IAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA 240
           +A  + YLH     PIV  NL S  +L +++   K+ DF   +S  +  T + ++S  G 
Sbjct: 146 VAKGMNYLH-NRNPPIVHRNLKSPNLLVDKKYTVKVCDFG--LSRLKASTFLSSKSAAGT 202

Query: 241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
             + APE  R    NEK DVY+F  +L EL T Q
Sbjct: 203 PEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQ 236

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 92.8 bits (231), Expect = 1e-21
 Identities = 47/190 (24%), Positives = 88/190 (46%), Gaps = 13/190 (6%)

Query: 86  KLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV 145
            + K  W+ + +++ +     S+S  K  I  +   ++++H +I+KL G CL      LV
Sbjct: 23  VVCKAKWRAKDVAIKQIE---SESERKAFIVELRQLSRVNHPNIVKLYGACLNPVC--LV 77

Query: 146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLC 205
            EY E  +L + + GA           H +   +  +  +AYLH   P+ ++  +L    
Sbjct: 78  MEYAEGGSLYNVLHGAEPL--PYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPN 135

Query: 206 ILFNEEN-VAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFS 264
           +L      V K+ DF  +  I    T     +  G+  + APE   G  ++EK DV+++ 
Sbjct: 136 LLLVAGGTVLKICDFGTACDIQTHMT-----NNKGSAAWMAPEVFEGSNYSEKCDVFSWG 190

Query: 265 TVLLELLTGQ 274
            +L E++T +
Sbjct: 191 IILWEVITRR 200

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 89.6 bits (223), Expect = 6e-21
 Identities = 41/197 (20%), Positives = 75/197 (38%), Gaps = 21/197 (10%)

Query: 86  KLYKGFWQERLISVMKYNESYSDSACKFSINNIVYA-AQMDHKHILKLIGCCLETPIPIL 144
           +L+KG WQ   I V         +      N          H ++L ++G C   P P  
Sbjct: 25  ELWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHP 84

Query: 145 --VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLI 202
             +  +  Y +L + +    +     +     +K A+ +A  +A+LH      I    L 
Sbjct: 85  TLITHWMPYGSLYNVLH---EGTNFVVDQSQAVKFALDMARGMAFLH-TLEPLIPRHALN 140

Query: 203 SLCILFNEENVAKL--FDFSESISIPEGETHIITRSRFGAWTYSAPE---YKRGGVFNEK 257
           S  ++ +E+  A++   D   S           +  R  A  + APE    K        
Sbjct: 141 SRSVMIDEDMTARISMADVKFSFQ---------SPGRMYAPAWVAPEALQKKPEDTNRRS 191

Query: 258 LDVYTFSTVLLELLTGQ 274
            D+++F+ +L EL+T +
Sbjct: 192 ADMWSFAVLLWELVTRE 208

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 89.3 bits (222), Expect = 8e-21
 Identities = 50/202 (24%), Positives = 81/202 (40%), Gaps = 25/202 (12%)

Query: 86  KLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQM---DHKHILKLIGCCLETPIP 142
           K+Y+ FW    ++V        +   +   N    A       H +I+ L G CL+ P  
Sbjct: 22  KVYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNL 81

Query: 143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLI 202
            LV E+     L   +        + +     +  A+ IA  + YLH     PI+  +L 
Sbjct: 82  CLVMEFARGGPLNRVL------SGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLK 135

Query: 203 SLCILFNEE--------NVAKLFDFSESISIPEGETHIITRSRFG--AWTYSAPEYKRGG 252
           S  IL  ++         + K+ DF  +             S  G  AW   APE  R  
Sbjct: 136 SSNILILQKVENGDLSNKILKITDFGLAREWHRTTK----MSAAGAYAWM--APEVIRAS 189

Query: 253 VFNEKLDVYTFSTVLLELLTGQ 274
           +F++  DV+++  +L ELLTG+
Sbjct: 190 MFSKGSDVWSYGVLLWELLTGE 211

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 86.2 bits (214), Expect = 1e-19
 Identities = 43/203 (21%), Positives = 73/203 (35%), Gaps = 38/203 (18%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
                  T +  + F  E  + V++                     +  H +IL  +G  
Sbjct: 53  MLNVTAPTPQQLQAFKNE--VGVLR---------------------KTRHVNILLFMGYS 89

Query: 137 LETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPI 196
               + I V ++ E ++L   +            +K  + +A   A  + YLH    + I
Sbjct: 90  TAPQLAI-VTQWCEGSSLYHHL----HASETKFEMKKLIDIARQTARGMDYLHA---KSI 141

Query: 197 VFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG--AWTYSAPE---YKRG 251
           +  +L S  I  +E+N  K+ DF  +                G   W   APE    +  
Sbjct: 142 IHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWM--APEVIRMQDS 199

Query: 252 GVFNEKLDVYTFSTVLLELLTGQ 274
             ++ + DVY F  VL EL+TGQ
Sbjct: 200 NPYSFQSDVYAFGIVLYELMTGQ 222

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 84.7 bits (210), Expect = 5e-19
 Identities = 42/204 (20%), Positives = 78/204 (38%), Gaps = 27/204 (13%)

Query: 86  KLYKGFWQERLISV----MKYNESYSDSACKFSINN----IVYAAQMDHKHILKLIGCCL 137
            ++KG   +    V    +   +S  ++            +   + ++H +I+KL G   
Sbjct: 34  LVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMH 93

Query: 138 ETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIV 197
             P   +V E+     L  R+         P+    +L++ + IA  + Y+      PIV
Sbjct: 94  NPPR--MVMEFVPCGDLYHRLLDKA----HPIKWSVKLRLMLDIALGIEYMQ-NQNPPIV 146

Query: 198 -----FGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPE--YKR 250
                  N+    +  N    AK+ DF  S      ++        G + + APE     
Sbjct: 147 HRDLRSPNIFLQSLDENAPVCAKVADFGLS-----QQSVHSVSGLLGNFQWMAPETIGAE 201

Query: 251 GGVFNEKLDVYTFSTVLLELLTGQ 274
              + EK D Y+F+ +L  +LTG+
Sbjct: 202 EESYTEKADTYSFAMILYTILTGE 225

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 81.6 bits (202), Expect = 7e-18
 Identities = 44/202 (21%), Positives = 76/202 (37%), Gaps = 20/202 (9%)

Query: 86  KLYKGFWQERLISV-MKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL 144
           +  K   +E    + MK    + +   +  +  +     ++H ++LK IG   +      
Sbjct: 25  QAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNF 84

Query: 145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISL 204
           + EY +  TLR  I    +          R+  A  IA  +AYLH      I+  +L S 
Sbjct: 85  ITEYIKGGTLRGII----KSMDSQYPWSQRVSFAKDIASGMAYLH---SMNIIHRDLNSH 137

Query: 205 CILFNEENVAKLFDF------------SESISIPEGETHIITRSRFGAWTYSAPEYKRGG 252
             L  E     + DF             E +   +        +  G   + APE   G 
Sbjct: 138 NCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGR 197

Query: 253 VFNEKLDVYTFSTVLLELLTGQ 274
            ++EK+DV++F  VL E++   
Sbjct: 198 SYDEKVDVFSFGIVLCEIIGRV 219

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 81.3 bits (201), Expect = 1e-17
 Identities = 39/205 (19%), Positives = 69/205 (33%), Gaps = 25/205 (12%)

Query: 86  KLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI-- 143
           +++ G W+   ++V  +  +  + A  F    I     M H++IL  I   ++       
Sbjct: 52  EVWMGKWRGEKVAVKVFFTT--EEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQ 109

Query: 144 --LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPR-----PI 196
             L+ +Y E  +L D +          L  K  LK+A      L +LH           I
Sbjct: 110 LYLITDYHENGSLYDYL------KSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAI 163

Query: 197 VFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWT--YSAPE------Y 248
              +L S  IL  +     + D   ++        +         T  Y  PE       
Sbjct: 164 AHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLN 223

Query: 249 KRGGVFNEKLDVYTFSTVLLELLTG 273
           +         D+Y+F  +L E+   
Sbjct: 224 RNHFQSYIMADMYSFGLILWEVARR 248

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 80.5 bits (199), Expect = 3e-17
 Identities = 38/211 (18%), Positives = 72/211 (34%), Gaps = 43/211 (20%)

Query: 76  RKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGC 135
           R    +       K F +E  +   +                     Q  H++++  +G 
Sbjct: 61  RLIDIERDNEDQLKAFKRE--VMAYR---------------------QTRHENVVLFMGA 97

Query: 136 CLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRP 195
           C+  P   ++    +  TL   +    +     L +    ++A  I   + YLH    + 
Sbjct: 98  CMSPPHLAIITSLCKGRTLYSVV----RDAKIVLDVNKTRQIAQEIVKGMGYLHA---KG 150

Query: 196 IVFGNLISLCILFNEENVAKLFDF---SESISIPEGETHIITRSRFGAWTYSAPEYKRGG 252
           I+  +L S  + ++   V  + DF   S S  +  G      R + G   + APE  R  
Sbjct: 151 ILHKDLKSKNVFYDNGKV-VITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQL 209

Query: 253 V---------FNEKLDVYTFSTVLLELLTGQ 274
                     F++  DV+   T+  EL   +
Sbjct: 210 SPDTEEDKLPFSKHSDVFALGTIWYELHARE 240

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 80.2 bits (198), Expect = 4e-17
 Identities = 40/208 (19%), Positives = 76/208 (36%), Gaps = 25/208 (12%)

Query: 86  KLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI-- 143
           ++++G W+   ++V  ++     S   F    I     + H++IL  I    +       
Sbjct: 57  EVWRGKWRGEEVAVKIFSSREERSW--FREAEIYQTVMLRHENILGFIAADNKDNGTWTQ 114

Query: 144 --LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPR-----PI 196
             LV +Y E+ +L D +      +   + ++  +K+A+  A  LA+LH+          I
Sbjct: 115 LWLVSDYHEHGSLFDYL------NRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAI 168

Query: 197 VFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWT--YSAPEYKRGGV- 253
              +L S  IL  +     + D   ++        I         T  Y APE     + 
Sbjct: 169 AHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSIN 228

Query: 254 -----FNEKLDVYTFSTVLLELLTGQST 276
                  ++ D+Y    V  E+    S 
Sbjct: 229 MKHFESFKRADIYAMGLVFWEIARRCSI 256

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 79.3 bits (196), Expect = 5e-17
 Identities = 39/206 (18%), Positives = 76/206 (36%), Gaps = 27/206 (13%)

Query: 86  KLYKGFWQERLISVMKYNESYSDSACKFSINNIVYA-AQMDHKHILKLIGCCLETPIPI- 143
           ++++G WQ   ++V  ++     S   +     +Y    + H++IL  I   + +     
Sbjct: 23  EVWRGSWQGENVAVKIFSSRDEKS---WFRETELYNTVMLRHENILGFIASDMTSRHSST 79

Query: 144 ---LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPR-----P 195
              L+  Y E  +L D +          L     L++ + IA  LA+LH+          
Sbjct: 80  QLWLITHYHEMGSLYDYL------QLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPA 133

Query: 196 IVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWT--YSAPE------ 247
           I   +L S  IL  +     + D   ++   +    +   +     T  Y APE      
Sbjct: 134 IAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETI 193

Query: 248 YKRGGVFNEKLDVYTFSTVLLELLTG 273
                   +++D++ F  VL E+   
Sbjct: 194 QVDCFDSYKRVDIWAFGLVLWEVARR 219

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 64.6 bits (158), Expect = 6e-12
 Identities = 37/207 (17%), Positives = 74/207 (35%), Gaps = 53/207 (25%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
           K +++ ++ K  K    E    VM                       +D+ H+ +L+G C
Sbjct: 50  KELREATSPKANKEILDE--AYVMA---------------------SVDNPHVCRLLGIC 86

Query: 137 LETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYL------HV 190
           L + + + + +   +  L D +    + H + +  ++ L   + IA  + YL      H 
Sbjct: 87  LTSTVQL-ITQLMPFGCLLDYV----REHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVH- 140

Query: 191 GFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA-----WTYSA 245
              R +   N     +L       K+ DF  +  +   E         G      W   A
Sbjct: 141 ---RDLAARN-----VLVKTPQHVKITDFGLAKLLGAEEK---EYHAEGGKVPIKWM--A 187

Query: 246 PEYKRGGVFNEKLDVYTFSTVLLELLT 272
            E     ++  + DV+++   + EL+T
Sbjct: 188 LESILHRIYTHQSDVWSYGVTVWELMT 214

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 63.9 bits (156), Expect = 8e-12
 Identities = 50/243 (20%), Positives = 85/243 (34%), Gaps = 64/243 (26%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
           K +K +S         +E  I +++                      + H++I+K  G C
Sbjct: 56  KSLKPESGGNHIADLKKE--IEILR---------------------NLYHENIVKYKGIC 92

Query: 137 LETPI-PI-LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYL------ 188
            E     I L+ E+    +L++ +      +   + LK +LK A+ I   + YL      
Sbjct: 93  TEDGGNGIKLIMEFLPSGSLKEYL----PKNKNKINLKQQLKYAVQICKGMDYLGSRQYV 148

Query: 189 HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA-----WTY 243
           H    R +   N     +L   E+  K+ DF  + +I   + +   +          W  
Sbjct: 149 H----RDLAARN-----VLVESEHQVKIGDFGLTKAIETDKEYYTVKD--DRDSPVFWY- 196

Query: 244 SAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRTHG----------SVRHLIEY 292
            APE      F    DV++F   L ELLT   S    +              +V  L+  
Sbjct: 197 -APECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNT 255

Query: 293 LKN 295
           LK 
Sbjct: 256 LKE 258

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 63.7 bits (155), Expect = 2e-11
 Identities = 44/158 (27%), Positives = 63/158 (39%), Gaps = 23/158 (14%)

Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
            Q DH HI+KLIG   E P+ I + E      LR  +    Q     L L   +  A  +
Sbjct: 446 RQFDHPHIVKLIGVITENPVWI-IMELCTLGELRSFL----QVRKFSLDLASLILYAYQL 500

Query: 182 AHALAYL------HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITR 235
           + ALAYL      H    R I   N     +L +  +  KL DF  S  + +   +  ++
Sbjct: 501 STALAYLESKRFVH----RDIAARN-----VLVSSNDCVKLGDFGLSRYMEDSTYYKASK 551

Query: 236 SRFGA-WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            +    W   APE      F    DV+ F   + E+L 
Sbjct: 552 GKLPIKWM--APESINFRRFTSASDVWMFGVCMWEILM 587

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 61.8 bits (150), Expect = 8e-11
 Identities = 51/192 (26%), Positives = 78/192 (40%), Gaps = 23/192 (11%)

Query: 88  YKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE 147
           + G W       +K  +  + S   F +       ++ H+ +++L     E PI I V E
Sbjct: 284 WMGTWNGTTRVAIKTLKPGTMSPEAF-LQEAQVMKKLRHEKLVQLYAVVSEEPIYI-VTE 341

Query: 148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYL------HVGFPRPIVFGNL 201
           Y    +L D + G    +     L   + +A  IA  +AY+      H    R +   N 
Sbjct: 342 YMSKGSLLDFLKGETGKYLRLPQL---VDMAAQIASGMAYVERMNYVH----RDLRAAN- 393

Query: 202 ISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG-AWTYSAPEYKRGGVFNEKLDV 260
               IL  E  V K+ DF  +  I + E      ++F   WT  APE    G F  K DV
Sbjct: 394 ----ILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWT--APEAALYGRFTIKSDV 447

Query: 261 YTFSTVLLELLT 272
           ++F  +L EL T
Sbjct: 448 WSFGILLTELTT 459

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 61.2 bits (149), Expect = 9e-11
 Identities = 37/207 (17%), Positives = 74/207 (35%), Gaps = 53/207 (25%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
           K +++ ++ K  K    E    VM                       +D+ H+ +L+G C
Sbjct: 50  KELREATSPKANKEILDE--AYVMA---------------------SVDNPHVCRLLGIC 86

Query: 137 LETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYL------HV 190
           L + + + + +   +  L D +    + H + +  ++ L   + IA  + YL      H 
Sbjct: 87  LTSTVQL-ITQLMPFGCLLDYV----REHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVH- 140

Query: 191 GFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA-----WTYSA 245
              R +   N     +L       K+ DF  +  +   E         G      W   A
Sbjct: 141 ---RDLAARN-----VLVKTPQHVKITDFGLAKLLGAEEK---EYHAEGGKVPIKWM--A 187

Query: 246 PEYKRGGVFNEKLDVYTFSTVLLELLT 272
            E     ++  + DV+++   + EL+T
Sbjct: 188 LESILHRIYTHQSDVWSYGVTVWELMT 214

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 60.7 bits (148), Expect = 9e-11
 Identities = 50/203 (24%), Positives = 74/203 (36%), Gaps = 46/203 (22%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
           K  K  ++  + + F QE     M+                     Q DH HI+KLIG  
Sbjct: 49  KTCKNCTSDSVREKFLQE--ALTMR---------------------QFDHPHIVKLIGVI 85

Query: 137 LETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYL------HV 190
            E P+ I + E      LR  +    Q     L L   +  A  ++ ALAYL      H 
Sbjct: 86  TENPVWI-IMELCTLGELRSFL----QVRKYSLDLASLILYAYQLSTALAYLESKRFVH- 139

Query: 191 GFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA-WTYSAPEYK 249
              R I   N     +L +  +  KL DF  S  + +   +  ++ +    W   APE  
Sbjct: 140 ---RDIAARN-----VLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWM--APESI 189

Query: 250 RGGVFNEKLDVYTFSTVLLELLT 272
               F    DV+ F   + E+L 
Sbjct: 190 NFRRFTSASDVWMFGVCMWEILM 212

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 38/207 (18%), Positives = 73/207 (35%), Gaps = 53/207 (25%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
           K I+  S  + ++       +  +                       +DH HI++L+G C
Sbjct: 48  KVIEDKSGRQSFQAVTDH--MLAIG---------------------SLDHAHIVRLLGLC 84

Query: 137 LETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYL------HV 190
             + + + V +Y    +L D +    + H   L  +  L   + IA  + YL      H 
Sbjct: 85  PGSSLQL-VTQYLPLGSLLDHV----RQHRGALGPQLLLNWGVQIAKGMYYLEEHGMVH- 138

Query: 191 GFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA-----WTYSA 245
              R +   N     +L    +  ++ DF  +  +P  +          A     W   A
Sbjct: 139 ---RNLAARN-----VLLKSPSQVQVADFGVADLLPPDDKQ---LLYSEAKTPIKWM--A 185

Query: 246 PEYKRGGVFNEKLDVYTFSTVLLELLT 272
            E    G +  + DV+++   + EL+T
Sbjct: 186 LESIHFGKYTHQSDVWSYGVTVWELMT 212

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 35/161 (21%), Positives = 63/161 (39%), Gaps = 26/161 (16%)

Query: 123 QMDHKHILKLIGCCLETPIPIL-VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
              H ++L L+G CL +    L V  Y ++  LR+ I    +       +K  +   + +
Sbjct: 146 DFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFI----RNETHNPTVKDLIGFGLQV 201

Query: 182 AHALAYL------HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITR 235
           A  + +L      H    R +   N      + +E+   K+ DF  +  + + E   +  
Sbjct: 202 AKGMKFLASKKFVH----RDLAARN-----CMLDEKFTVKVADFGLARDMYDKEFDSVHN 252

Query: 236 SRFGA----WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
                    W   A E  +   F  K DV++F  +L EL+T
Sbjct: 253 KTGAKLPVKWM--ALESLQTQKFTTKSDVWSFGVLLWELMT 291

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 61.3 bits (149), Expect = 1e-10
 Identities = 51/192 (26%), Positives = 77/192 (40%), Gaps = 23/192 (11%)

Query: 88  YKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE 147
           + G W       +K  +  + S   F +       ++ H+ +++L     E PI I V E
Sbjct: 201 WMGTWNGTTRVAIKTLKPGTMSPEAF-LQEAQVMKKLRHEKLVQLYAVVSEEPIYI-VTE 258

Query: 148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYL------HVGFPRPIVFGNL 201
           Y    +L D         +  L L   + +A  IA  +AY+      H    R +   N 
Sbjct: 259 YMSKGSLLDF-LKGETGKY--LRLPQLVDMAAQIASGMAYVERMNYVH----RDLRAAN- 310

Query: 202 ISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG-AWTYSAPEYKRGGVFNEKLDV 260
               IL  E  V K+ DF  +  I + E      ++F   WT  APE    G F  K DV
Sbjct: 311 ----ILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWT--APEAALYGRFTIKSDV 364

Query: 261 YTFSTVLLELLT 272
           ++F  +L EL T
Sbjct: 365 WSFGILLTELTT 376

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 36/161 (22%), Positives = 64/161 (39%), Gaps = 26/161 (16%)

Query: 123 QMDHKHILKLIGCCLETPIPIL-VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
              H ++L L+G CL +    L V  Y ++  LR+ I    +       +K  +   + +
Sbjct: 82  DFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFI----RNETHNPTVKDLIGFGLQV 137

Query: 182 AHALAYL------HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITR 235
           A  + YL      H    R +   N      + +E+   K+ DF  +  + + E + +  
Sbjct: 138 AKGMKYLASKKFVH----RDLAARN-----CMLDEKFTVKVADFGLARDMYDKEYYSVHN 188

Query: 236 SRFGA----WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
                    W   A E  +   F  K DV++F  +L EL+T
Sbjct: 189 KTGAKLPVKWM--ALESLQTQKFTTKSDVWSFGVLLWELMT 227

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 59.2 bits (144), Expect = 3e-10
 Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 26/161 (16%)

Query: 123 QMDHKHILKLIGCCLET-PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
            ++H ++L LIG  L    +P ++  Y  +  L   I    +       +K  +   + +
Sbjct: 78  GLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFI----RSPQRNPTVKDLISFGLQV 133

Query: 182 AHALAYL------HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITR 235
           A  + YL      H    R +   N      + +E    K+ DF  +  I + E + + +
Sbjct: 134 ARGMEYLAEQKFVH----RDLAARN-----CMLDESFTVKVADFGLARDILDREYYSVQQ 184

Query: 236 SRFGA----WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            R       WT  A E  +   F  K DV++F  +L ELLT
Sbjct: 185 HRHARLPVKWT--ALESLQTYRFTTKSDVWSFGVLLWELLT 223

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 58/249 (23%), Positives = 92/249 (36%), Gaps = 78/249 (31%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
           K +K D+  +   G+ QE  I +++                      + H+HI+K  GCC
Sbjct: 66  KALKADAGPQHRSGWKQE--IDILR---------------------TLYHEHIIKYKGCC 102

Query: 137 LET-PIPI-LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKV------AMGIAHALAYL 188
            +     + LV EY    +LRD             L +H + +      A  I   +AYL
Sbjct: 103 EDAGAASLQLVMEYVPLGSLRD------------YLPRHSIGLAQLLLFAQQICEGMAYL 150

Query: 189 ------HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA-- 240
                 H    R +   N     +L + + + K+ DF  + ++PEG  +   R R     
Sbjct: 151 HAQHYIH----RDLAARN-----VLLDNDRLVKIGDFGLAKAVPEGHEY--YRVREDGDS 199

Query: 241 ---WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRTHG----------SV 286
              W   APE  +   F    DV++F   L ELLT   S++                 +V
Sbjct: 200 PVFWY--APECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTV 257

Query: 287 RHLIEYLKN 295
             L E L+ 
Sbjct: 258 LRLTELLER 266

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 58.8 bits (143), Expect = 4e-10
 Identities = 37/207 (17%), Positives = 75/207 (36%), Gaps = 52/207 (25%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
           K +KQ +     +   +E    +M                      Q+D+ +I++LIG C
Sbjct: 43  KVLKQGTEKADTEEMMRE--AQIMH---------------------QLDNPYIVRLIGVC 79

Query: 137 LETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYL------HV 190
               + + V E      L   +        E + + +  ++   ++  + YL      H 
Sbjct: 80  QAEALML-VMEMAGGGPLHKFL----VGKREEIPVSNVAELLHQVSMGMKYLEEKNFVH- 133

Query: 191 GFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA-----WTYSA 245
              R +   N     +L    + AK+ DF  S ++   +++    +R        W   A
Sbjct: 134 ---RDLAARN-----VLLVNRHYAKISDFGLSKALGADDSYY--TARSAGKWPLKWY--A 181

Query: 246 PEYKRGGVFNEKLDVYTFSTVLLELLT 272
           PE      F+ + DV+++   + E L+
Sbjct: 182 PECINFRKFSSRSDVWSYGVTMWEALS 208

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 48/208 (23%), Positives = 74/208 (35%), Gaps = 54/208 (25%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIG-C 135
           K  ++     L   F QE    ++K                     Q  H +I++LIG C
Sbjct: 145 KSCRETLPPDLKAKFLQE--ARILK---------------------QYSHPNIVRLIGVC 181

Query: 136 CLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYL------H 189
             + PI I V E  +       +    +     L +K  L++    A  + YL      H
Sbjct: 182 TQKQPIYI-VMELVQGGDFLTFL----RTEGARLRVKTLLQMVGDAAAGMEYLESKCCIH 236

Query: 190 VGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA-----WTYS 244
               R +   N      L  E+NV K+ DF  S    +G       S         WT  
Sbjct: 237 ----RDLAARN-----CLVTEKNVLKISDFGMSREEADGV---YAASGGLRQVPVKWT-- 282

Query: 245 APEYKRGGVFNEKLDVYTFSTVLLELLT 272
           APE    G ++ + DV++F  +L E  +
Sbjct: 283 APEALNYGRYSSESDVWSFGILLWETFS 310

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 58.8 bits (143), Expect = 5e-10
 Identities = 46/212 (21%), Positives = 77/212 (36%), Gaps = 53/212 (25%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
           K + + ++ +    F  E   SVMK                     + +  H+++L+G  
Sbjct: 61  KTVNEAASMRERIEFLNE--ASVMK---------------------EFNCHHVVRLLGVV 97

Query: 137 LETPIPILVFEYGEYTTLRD-----RIFGAPQPHFEPLLLKHRLKVAMGIAHALAYL--- 188
            +    +++ E      L+      R   A  P   P  L   +++A  IA  +AYL   
Sbjct: 98  SQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN 157

Query: 189 ---HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA----- 240
              H    R +   N      +  E+   K+ DF  +  I E +     R          
Sbjct: 158 KFVH----RDLAARN-----CMVAEDFTVKIGDFGMTRDIYETD---YYRKGGKGLLPVR 205

Query: 241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           W   +PE  + GVF    DV++F  VL E+ T
Sbjct: 206 WM--SPESLKDGVFTTYSDVWSFGVVLWEIAT 235

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 58.8 bits (142), Expect = 6e-10
 Identities = 31/265 (11%), Positives = 79/265 (29%), Gaps = 20/265 (7%)

Query: 59  RIFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQER--LISVMKY------NESYSDSA 110
            I    E ++ +        + + +  ++Y+    +     +  K+        +  +  
Sbjct: 53  AIKPKTEFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFY 112

Query: 111 CKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLL 170
               +   +          +K     L     +LV E   Y TL + I        + + 
Sbjct: 113 IGTQLMERL--KPSMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMP 170

Query: 171 LKHRLKVAMGIAHALAYLHVGF-------PRPIVFGNLISLCILFNEENVA-KLFDFSES 222
               +  AM + + +  +H          P   + GN        ++ +    L D  +S
Sbjct: 171 QGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQS 230

Query: 223 ISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT 282
           I +       I  ++     +   E      +N ++D +  +  +  +L G   +  ++ 
Sbjct: 231 IDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMK--VKN 288

Query: 283 HGSVRHLIEYLKNYLQNNRFTEIAD 307
            G         +     + + E   
Sbjct: 289 EGGECKPEGLFRRLPHLDMWNEFFH 313

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 58.0 bits (141), Expect = 8e-10
 Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 26/159 (16%)

Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRD--RIFGAPQPHFEPLLLKHRLKVAMG 180
           Q+ H+ +++L     + PI I + EY E  +L D  +     +     L     L +A  
Sbjct: 64  QLQHQRLVRLYAVVTQEPIYI-ITEYMENGSLVDFLKTPSGIKLTINKL-----LDMAAQ 117

Query: 181 IAHALAYL------HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIIT 234
           IA  +A++      H    R +   N     IL ++    K+ DF  +  I + E     
Sbjct: 118 IAEGMAFIEERNYIH----RDLRAAN-----ILVSDTLSCKIADFGLARLIEDNEYTARE 168

Query: 235 RSRFGA-WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            ++F   WT  APE    G F  K DV++F  +L E++T
Sbjct: 169 GAKFPIKWT--APEAINYGTFTIKSDVWSFGILLTEIVT 205

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 58.6 bits (142), Expect = 8e-10
 Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 26/159 (16%)

Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRD--RIFGAPQPHFEPLLLKHRLKVAMG 180
            + H  ++KL     + PI I + E+    +L D  +             L   +  +  
Sbjct: 239 TLQHDKLVKLHAVVTKEPIYI-ITEFMAKGSLLDFLK-----SDEGSKQPLPKLIDFSAQ 292

Query: 181 IAHALAYL------HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIIT 234
           IA  +A++      H    R +   N     IL +   V K+ DF  +  I + E     
Sbjct: 293 IAEGMAFIEQRNYIH----RDLRAAN-----ILVSASLVCKIADFGLARVIEDNEYTARE 343

Query: 235 RSRFGA-WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            ++F   WT  APE    G F  K DV++F  +L+E++T
Sbjct: 344 GAKFPIKWT--APEAINFGSFTIKSDVWSFGILLMEIVT 380

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 57.6 bits (140), Expect = 9e-10
 Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 29/162 (17%)

Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
             +DH+++++L G  L  P+ + V E     +L DR+    Q HF    L    + A+ +
Sbjct: 76  HSLDHRNLIRLYGVVLTPPMKM-VTELAPLGSLLDRL-RKHQGHFLLGTL---SRYAVQV 130

Query: 182 AHALAYL------HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITR 235
           A  + YL      H    R +   N     +L    ++ K+ DF    ++P+ + H    
Sbjct: 131 AEGMGYLESKRFIH----RDLAARN-----LLLATRDLVKIGDFGLMRALPQNDDH--YV 179

Query: 236 SRFGA-----WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            +        W   APE  +   F+   D + F   L E+ T
Sbjct: 180 MQEHRKVPFAWC--APESLKTRTFSHASDTWMFGVTLWEMFT 219

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 57.6 bits (140), Expect = 1e-09
 Identities = 50/203 (24%), Positives = 75/203 (36%), Gaps = 46/203 (22%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
           K  K+D T    + F  E    +MK                      +DH HI+KLIG  
Sbjct: 46  KTCKKDCTLDNKEKFMSE--AVIMK---------------------NLDHPHIVKLIGII 82

Query: 137 LETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYL------HV 190
            E P  I + E   Y  L   +    + +   L +   +  ++ I  A+AYL      H 
Sbjct: 83  EEEPTWI-IMELYPYGELGHYL----ERNKNSLKVLTLVLYSLQICKAMAYLESINCVH- 136

Query: 191 GFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG-AWTYSAPEYK 249
              R I   N     IL       KL DF  S  I + + +  + +R    W   +PE  
Sbjct: 137 ---RDIAVRN-----ILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIKWM--SPESI 186

Query: 250 RGGVFNEKLDVYTFSTVLLELLT 272
               F    DV+ F+  + E+L+
Sbjct: 187 NFRRFTTASDVWMFAVCMWEILS 209

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 57.6 bits (139), Expect = 2e-09
 Identities = 38/207 (18%), Positives = 75/207 (36%), Gaps = 52/207 (25%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
           K +KQ +     +   +E    +M                      Q+D+ +I++LIG C
Sbjct: 369 KVLKQGTEKADTEEMMRE--AQIMH---------------------QLDNPYIVRLIGVC 405

Query: 137 LETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYL------HV 190
               + + V E      L   +        E + + +  ++   ++  + YL      H 
Sbjct: 406 QAEALML-VMEMAGGGPLHKFL----VGKREEIPVSNVAELLHQVSMGMKYLEEKNFVH- 459

Query: 191 GFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA-----WTYSA 245
              R +   N     +L    + AK+ DF  S ++   +++   RS         W   A
Sbjct: 460 ---RNLAARN-----VLLVNRHYAKISDFGLSKALGADDSYYTARS--AGKWPLKWY--A 507

Query: 246 PEYKRGGVFNEKLDVYTFSTVLLELLT 272
           PE      F+ + DV+++   + E L+
Sbjct: 508 PECINFRKFSSRSDVWSYGVTMWEALS 534

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 37/170 (21%)

Query: 123 QMDHKHILKLIGCCLET-----PIPILVFEYGEY----TTLRDRIFGAPQPHFEPLLLKH 173
              H ++++L+G C+E      P P+++  + +Y    T L        +   + + L+ 
Sbjct: 92  DFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYS---RLETGPKHIPLQT 148

Query: 174 RLKVAMGIAHALAYL------HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE 227
            LK  + IA  + YL      H    R +   N      +  ++    + DF  S  I  
Sbjct: 149 LLKFMVDIALGMEYLSNRNFLH----RDLAARN-----CMLRDDMTVCVADFGLSKKIYS 199

Query: 228 GETHIITRSRFGA-----WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           G+ +   R    A     W   A E     V+  K DV+ F   + E+ T
Sbjct: 200 GDYY---RQGRIAKMPVKWI--AIESLADRVYTSKSDVWAFGVTMWEIAT 244

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 32/168 (19%)

Query: 123 QMDHKHILKLIGCCLE------TPIPILVFEYGEYTTLRDRIFGA-PQPHFEPLLLKHRL 175
           + DH H+ KL+G  L        PIP+++  + ++  L   +  +    +   L L+  +
Sbjct: 81  EFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLV 140

Query: 176 KVAMGIAHALAYL------HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGE 229
           +  + IA  + YL      H    R +   N      +  E+    + DF  S  I  G+
Sbjct: 141 RFMVDIACGMEYLSSRNFIH----RDLAARN-----CMLAEDMTVCVADFGLSRKIYSGD 191

Query: 230 THIITRSRFGA-----WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            +   R    +     W   A E     ++    DV+ F   + E++T
Sbjct: 192 YY---RQGCASKLPVKWL--ALESLADNLYTVHSDVWAFGVTMWEIMT 234

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 53/199 (26%), Positives = 76/199 (38%), Gaps = 42/199 (21%)

Query: 122 AQMDHKHILKLIGCCLETPI-PI-LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAM 179
             + H +I+K  G C       + L+ EY  Y +LRD +    Q H E +     L+   
Sbjct: 66  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTS 121

Query: 180 GIAHALAYL------HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHII 233
            I   + YL      H    R +   N     IL   EN  K+ DF  +  +P+ +    
Sbjct: 122 QICKGMEYLGTKRYIH----RDLATRN-----ILVENENRVKIGDFGLTKVLPQDKEF-- 170

Query: 234 TRSRFGA-----WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-----GQSTRDLLRTH 283
            + +        W   APE      F+   DV++F  VL EL T          + +R  
Sbjct: 171 FKVKEPGESPIFWY--APESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMI 228

Query: 284 G-------SVRHLIEYLKN 295
           G        V HLIE LKN
Sbjct: 229 GNDKQGQMIVFHLIELLKN 247

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 56.1 bits (136), Expect = 3e-09
 Identities = 33/164 (20%), Positives = 52/164 (31%), Gaps = 29/164 (17%)

Query: 121 AAQMDHKHILKL--IGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVA 178
           A ++   H++ +   G         +         L   +         PL     + + 
Sbjct: 88  AGRLQEPHVVPIHDFGE--IDGQLYVDMRLINGVDLAAML-----RRQGPLAPPRAVAIV 140

Query: 179 MGIAHALAYLH-VGF------PRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH 231
             I  AL   H  G       P      N     IL + ++ A L DF   I+    +  
Sbjct: 141 RQIGSALDAAHAAGATHRDVKP-----EN-----ILVSADDFAYLVDFG--IASATTDEK 188

Query: 232 I-ITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
           +    +  G   Y APE         + D+Y  + VL E LTG 
Sbjct: 189 LTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGS 232

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 56.1 bits (136), Expect = 3e-09
 Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 15/157 (9%)

Query: 121 AAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMG 180
           ++Q+ H++I+ +I    E     LV EY E  TL + I    + H  PL +   +     
Sbjct: 65  SSQLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYI----ESHG-PLSVDTAINFTNQ 119

Query: 181 IAHALAYLH-VGFP-RPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHI-ITRSR 237
           I   + + H +    R I   N     IL +     K+FDF   I+    ET +  T   
Sbjct: 120 ILDGIKHAHDMRIVHRDIKPQN-----ILIDSNKTLKIFDFG--IAKALSETSLTQTNHV 172

Query: 238 FGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
            G   Y +PE  +G   +E  D+Y+   VL E+L G+
Sbjct: 173 LGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGE 209

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 53/199 (26%), Positives = 77/199 (38%), Gaps = 42/199 (21%)

Query: 122 AQMDHKHILKLIGCCLETPI-PI-LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAM 179
             + H +I+K  G C       + L+ EY  Y +LRD +    Q H E +     L+   
Sbjct: 97  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTS 152

Query: 180 GIAHALAYL------HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHII 233
            I   + YL      H    R +   N     IL   EN  K+ DF  +  +P+ + +  
Sbjct: 153 QICKGMEYLGTKRYIH----RDLATRN-----ILVENENRVKIGDFGLTKVLPQDKEY-- 201

Query: 234 TRSRFGA-----WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-----GQSTRDLLRTH 283
            + +        W   APE      F+   DV++F  VL EL T          + +R  
Sbjct: 202 YKVKEPGESPIFWY--APESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMI 259

Query: 284 G-------SVRHLIEYLKN 295
           G        V HLIE LKN
Sbjct: 260 GNDKQGQMIVFHLIELLKN 278

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 55.7 bits (135), Expect = 4e-09
 Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 38/164 (23%)

Query: 123 QMDHKHILKLIGCCLETPIPI-LVFEYGEYTTLRD--RIFGAPQPHFEPLLLKHRLKVAM 179
           Q+ H ++++L+G  +E    + +V EY    +L D  R  G      + LL     K ++
Sbjct: 70  QLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLL-----KFSL 124

Query: 180 GIAHALAYL------HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHII 233
            +  A+ YL      H    R +   N     +L +E+NVAK+ DF        G T   
Sbjct: 125 DVCEAMEYLEGNNFVH----RDLAARN-----VLVSEDNVAKVSDF--------GLTKEA 167

Query: 234 TRSRFGA-----WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           + ++        WT  APE  R   F+ K DV++F  +L E+ +
Sbjct: 168 SSTQDTGKLPVKWT--APEALREKKFSTKSDVWSFGILLWEIYS 209

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 55.9 bits (135), Expect = 6e-09
 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 23/158 (14%)

Query: 123 QMDHKHILKLIGCCLETPIPI-LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           ++ H ++++L+G C   P P  ++ E+  Y  L D +    +     ++L   L +A  I
Sbjct: 272 EIKHPNLVQLLGVCTREP-PFYIITEFMTYGNLLDYLRECNRQEVSAVVL---LYMATQI 327

Query: 182 AHALAYL------HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITR 235
           + A+ YL      H    R +   N      L  E ++ K+ DF  S  +          
Sbjct: 328 SSAMEYLEKKNFIH----RNLAARN-----CLVGENHLVKVADFGLSRLMTGDTYTAHAG 378

Query: 236 SRFGA-WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           ++F   WT  APE      F+ K DV+ F  +L E+ T
Sbjct: 379 AKFPIKWT--APESLAYNKFSIKSDVWAFGVLLWEIAT 414

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 54.9 bits (133), Expect = 6e-09
 Identities = 35/162 (21%), Positives = 66/162 (40%), Gaps = 32/162 (19%)

Query: 123 QMDHKHILKLIGCCL-ETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           ++ H  +++L G CL + PI + V E+ E+  L D +    +        +  L + + +
Sbjct: 59  KLSHPKLVQLYGVCLEQAPICL-VTEFMEHGCLSDYL----RTQRGLFAAETLLGMCLDV 113

Query: 182 AHALAYL------HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITR 235
              +AYL      H    R +   N      L  E  V K+ DF  +  + + +      
Sbjct: 114 CEGMAYLEEACVIH----RDLAARN-----CLVGENQVIKVSDFGMTRFVLDDQ----YT 160

Query: 236 SRFGA-----WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           S  G      W   +PE      ++ K DV++F  ++ E+ +
Sbjct: 161 SSTGTKFPVKWA--SPEVFSFSRYSSKSDVWSFGVLMWEVFS 200

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 54.9 bits (133), Expect = 7e-09
 Identities = 35/162 (21%), Positives = 65/162 (40%), Gaps = 32/162 (19%)

Query: 123 QMDHKHILKLIGCCL-ETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
            + H+ +++L G C  + PI I + EY     L + +    +        +  L++   +
Sbjct: 75  NLSHEKLVQLYGVCTKQRPIFI-ITEYMANGCLLNYL----REMRHRFQTQQLLEMCKDV 129

Query: 182 AHALAYL------HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITR 235
             A+ YL      H    R +   N      L N++ V K+ DF  S  + + E      
Sbjct: 130 CEAMEYLESKQFLH----RDLAARN-----CLVNDQGVVKVSDFGLSRYVLDDEY----T 176

Query: 236 SRFGA-----WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           S  G+     W+   PE      F+ K D++ F  ++ E+ +
Sbjct: 177 SSVGSKFPVRWS--PPEVLMYSKFSSKSDIWAFGVLMWEIYS 216

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 54.9 bits (133), Expect = 7e-09
 Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 23/158 (14%)

Query: 123 QMDHKHILKLIGCCL-ETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           ++ H ++++L+G C  E P  I + E+  Y  L D +    +     ++L   L +A  I
Sbjct: 65  EIKHPNLVQLLGVCTREPPFYI-ITEFMTYGNLLDYLRECNRQEVSAVVL---LYMATQI 120

Query: 182 AHALAYL------HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITR 235
           + A+ YL      H    R +   N      L  E ++ K+ DF  S  +          
Sbjct: 121 SSAMEYLEKKNFIH----RDLAARN-----CLVGENHLVKVADFGLSRLMTGDTYTAHAG 171

Query: 236 SRFGA-WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           ++F   WT  APE      F+ K DV+ F  +L E+ T
Sbjct: 172 AKFPIKWT--APESLAYNKFSIKSDVWAFGVLLWEIAT 207

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 55.0 bits (133), Expect = 8e-09
 Identities = 34/162 (20%), Positives = 67/162 (41%), Gaps = 30/162 (18%)

Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
            Q+D+ +I+++IG C      + V E  E   L   +    Q +   +  K+ +++   +
Sbjct: 73  QQLDNPYIVRMIGICEAESWML-VMEMAELGPLNKYL----QQN-RHVKDKNIIELVHQV 126

Query: 182 AHALAYL------HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITR 235
           +  + YL      H    R +   N     +L   ++ AK+ DF  S ++   E +   +
Sbjct: 127 SMGMKYLEESNFVH----RDLAARN-----VLLVTQHYAKISDFGLSKALRADENYYKAQ 177

Query: 236 SRFGA-----WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           +         W   APE      F+ K DV++F  ++ E  +
Sbjct: 178 T--HGKWPVKWY--APECINYYKFSSKSDVWSFGVLMWEAFS 215

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 55.0 bits (133), Expect = 8e-09
 Identities = 44/172 (25%), Positives = 62/172 (36%), Gaps = 35/172 (20%)

Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEY----TTLRDR------IFGAPQPHFEPLLL 171
             + H+HI++  G C E    ++VFEY  +      LR        + G       PL L
Sbjct: 98  TMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGL 157

Query: 172 KHRLKVAMGIAHALAYL------HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI 225
              L VA  +A  + YL      H    R +   N      L  +  V K+ DF  S  I
Sbjct: 158 GQLLAVASQVAAGMVYLAGLHFVH----RDLATRN-----CLVGQGLVVKIGDFGMSRDI 208

Query: 226 PEGETHIITRSRFGA-----WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
              +     R          W    PE      F  + DV++F  VL E+ T
Sbjct: 209 YSTDY---YRVGGRTMLPIRWM--PPESILYRKFTTESDVWSFGVVLWEIFT 255

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 54.5 bits (132), Expect = 9e-09
 Identities = 34/158 (21%), Positives = 65/158 (41%), Gaps = 24/158 (15%)

Query: 123 QMDHKHILKLIGCCL-ETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           ++ H  ++K  G C  E PI I V EY     L + +    + H + L     L++   +
Sbjct: 59  KLSHPKLVKFYGVCSKEYPIYI-VTEYISNGCLLNYL----RSHGKGLEPSQLLEMCYDV 113

Query: 182 AHALAYL------HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITR 235
              +A+L      H    R +   N      L + +   K+ DF  +  + + +      
Sbjct: 114 CEGMAFLESHQFIH----RDLAARN-----CLVDRDLCVKVSDFGMTRYVLDDQYVSSVG 164

Query: 236 SRFGA-WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           ++F   W+  APE      ++ K DV+ F  ++ E+ +
Sbjct: 165 TKFPVKWS--APEVFHYFKYSSKSDVWAFGILMWEVFS 200

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 55.6 bits (134), Expect = 9e-09
 Identities = 36/166 (21%), Positives = 56/166 (33%), Gaps = 37/166 (22%)

Query: 121 AAQMDHKHILKLI-----GCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRL 175
            A++ H  I+++            P+  +V EY    +L+             L +   +
Sbjct: 133 LAEVVHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQ-------KLPVAEAI 185

Query: 176 KVAMGIAHALAYLHVGFPRPIVF-----GNLISLCILFNEENVAKLFDFSESISIPEGET 230
              + I  AL+YLH      +V+      N     I+  EE + KL D         G  
Sbjct: 186 AYLLEILPALSYLH---SIGLVYNDLKPEN-----IMLTEEQL-KLIDL--------GAV 228

Query: 231 HIITRSR--FGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
             I      +G   + APE  R G      D+YT    L  L    
Sbjct: 229 SRINSFGYLYGTPGFQAPEIVRTGP-TVATDIYTVGRTLAALTLDL 273

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 46/209 (22%), Positives = 71/209 (33%), Gaps = 54/209 (25%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
           K ++     +  + F +E  I ++K                      +    I+K  G  
Sbjct: 58  KQLQHSGPDQQ-RDFQRE--IQILK---------------------ALHSDFIVKYRGVS 93

Query: 137 LETPI-PI-LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYL------ 188
                  + LV EY     LRD +    Q H   L     L  +  I   + YL      
Sbjct: 94  YGPGRQSLRLVMEYLPSGCLRDFL----QRHRARLDASRLLLYSSQICKGMEYLGSRRCV 149

Query: 189 HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA-----WTY 243
           H    R +   N     IL   E   K+ DF  +  +P  + + + R          W  
Sbjct: 150 H----RDLAARN-----ILVESEAHVKIADFGLAKLLPLDKDYYVVRE--PGQSPIFWY- 197

Query: 244 SAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            APE     +F+ + DV++F  VL EL T
Sbjct: 198 -APESLSDNIFSRQSDVWSFGVVLYELFT 225

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 42/210 (20%), Positives = 70/210 (33%), Gaps = 49/210 (23%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
           K + +  + +    F  E    ++                      + +H++I++ IG  
Sbjct: 66  KTLPEVCSEQDELDFLME--ALIIS---------------------KFNHQNIVRCIGVS 102

Query: 137 LETPIPILVFEYGEYTTLRD--RIFGAPQPHFEPLLLKHRLKVAMGIAHALAYL------ 188
           L++    ++ E      L+   R           L +   L VA  IA    YL      
Sbjct: 103 LQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFI 162

Query: 189 HVGFPRPIVFGN-LISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA-----WT 242
           H    R I   N L++         VAK+ DF  +  I         R    A     W 
Sbjct: 163 H----RDIAARNCLLTCP---GPGRVAKIGDFGMARDIYRASY---YRKGGCAMLPVKWM 212

Query: 243 YSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
              PE    G+F  K D ++F  +L E+ +
Sbjct: 213 --PPEAFMEGIFTSKTDTWSFGVLLWEIFS 240

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 28/159 (17%)

Query: 123 QMDHKHILKLIGCCLETPIPI-LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           Q+ H ++++L+G  +E    + +V EY    +L D +    +       L   LK ++ +
Sbjct: 242 QLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCL---LKFSLDV 298

Query: 182 AHALAYL------HVGFPRPIVFGNLISLCILFNEENVAKLFDF--SESISIPEGETHII 233
             A+ YL      H    R +   N     +L +E+NVAK+ DF  ++  S  +    + 
Sbjct: 299 CEAMEYLEGNNFVH----RDLAARN-----VLVSEDNVAKVSDFGLTKEASSTQDTGKLP 349

Query: 234 TRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            +     WT  APE  R   F+ K DV++F  +L E+ +
Sbjct: 350 VK-----WT--APEALREKKFSTKSDVWSFGILLWEIYS 381

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 24/160 (15%)

Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIA 182
           ++ HKH++   G C+     ILV E+ ++ +L   +    + +   + +  +L+VA  +A
Sbjct: 68  KLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYL----KKNKNCINILWKLEVAKQLA 123

Query: 183 HALAYL------HVGFPRPIVFGN-LIS--LCILFNEENVAKLFDFSESISIPEGETHII 233
            A+ +L      H      +   N L+              KL D   SI++   +   I
Sbjct: 124 AAMHFLEENTLIH----GNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKD---I 176

Query: 234 TRSRFGAWTYSAPE-YKRGGVFNEKLDVYTFSTVLLELLT 272
            + R   W    PE  +     N   D ++F T L E+ +
Sbjct: 177 LQERI-PWV--PPECIENPKNLNLATDKWSFGTTLWEICS 213

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 45/208 (21%), Positives = 73/208 (35%), Gaps = 53/208 (25%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
           K +K   T +  + F  E   S+M                      Q DH +I++L G  
Sbjct: 83  KALKAGYTERQRRDFLSE--ASIMG---------------------QFDHPNIIRLEGVV 119

Query: 137 LETPIPIL-VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYL------H 189
                  + V EY E  +L   +    + H     +   + +  G+   + YL      H
Sbjct: 120 TRGR-LAMIVTEYMENGSLDTFL----RTHDGQFTIMQLVGMLRGVGAGMRYLSDLGYVH 174

Query: 190 VGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA-----WTYS 244
               R +   N     +L +   V K+ DF  S  + +      T +  G      WT  
Sbjct: 175 ----RDLAARN-----VLVDSNLVCKVSDFGLSRVLEDDPDAAYTTT--GGKIPIRWT-- 221

Query: 245 APEYKRGGVFNEKLDVYTFSTVLLELLT 272
           APE      F+   DV++F  V+ E+L 
Sbjct: 222 APEAIAFRTFSSASDVWSFGVVMWEVLA 249

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 39/164 (23%), Positives = 61/164 (37%), Gaps = 26/164 (15%)

Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRD--RIFGAPQPHFEPLLLKHRLKVAMG 180
           + +H++I++ IG  L++    ++ E      L+   R           L +   L VA  
Sbjct: 130 KFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARD 189

Query: 181 IAHALAYL------HVGFPRPIVFGN-LISLCILFNEENVAKLFDFSESISIPEGETHII 233
           IA    YL      H    R I   N L++         VAK+ DF  +  I        
Sbjct: 190 IACGCQYLEENHFIH----RDIAARNCLLTCP---GPGRVAKIGDFGMARDIYRAGY--- 239

Query: 234 TRSRFGA-----WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            R    A     W    PE    G+F  K D ++F  +L E+ +
Sbjct: 240 YRKGGCAMLPVKWM--PPEAFMEGIFTSKTDTWSFGVLLWEIFS 281

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 45/205 (21%), Positives = 74/205 (36%), Gaps = 47/205 (22%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
           K +K   T K  + F  E   S+M                      Q DH +I++L G  
Sbjct: 79  KTLKVGYTEKQRRDFLGE--ASIMG---------------------QFDHPNIIRLEGVV 115

Query: 137 LETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYL------HV 190
            ++   ++V EY E  +L   +    + H     +   + +  GIA  + YL      H 
Sbjct: 116 TKSKPVMIVTEYMENGSLDSFL----RKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVH- 170

Query: 191 GFPRPIVFGNLISLCILFNEENVAKLFDF--SESISIPEGETHIITRSRFGA-WTYSAPE 247
              R +   N     IL N   V K+ DF     +       +     +    WT  +PE
Sbjct: 171 ---RDLAARN-----ILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWT--SPE 220

Query: 248 YKRGGVFNEKLDVYTFSTVLLELLT 272
                 F    DV+++  VL E+++
Sbjct: 221 AIAYRKFTSASDVWSYGIVLWEVMS 245

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 46/234 (19%), Positives = 79/234 (33%), Gaps = 65/234 (27%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
           K +K D+T K       E  + +MK                        HK+I+ L+G C
Sbjct: 73  KMLKDDATEKDLSDLVSE--MEMMK----------MIG----------KHKNIINLLGAC 110

Query: 137 LETPIPILVFEYGEYTTLRD-----------RIFGAPQPHFEPLLLKHRLKVAMGIAHAL 185
            +     ++ EY     LR+             +   +   E +  K  +     +A  +
Sbjct: 111 TQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGM 170

Query: 186 AYL------HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG 239
            YL      H    R +   N     +L  E NV K+ DF  +  I   + +   +    
Sbjct: 171 EYLASQKCIH----RDLAARN-----VLVTENNVMKIADFGLARDINNIDYY---KKTTN 218

Query: 240 A-----WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-------GQSTRDLLR 281
                 W   APE     V+  + DV++F  ++ E+ T       G    +L +
Sbjct: 219 GRLPVKWM--APEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFK 270

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 47/207 (22%), Positives = 71/207 (34%), Gaps = 51/207 (24%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
           K +K   T K    F  E    +M                      Q  H +I++L G  
Sbjct: 79  KTLKAGYTEKQRVDFLGE--AGIMG---------------------QFSHHNIIRLEGVI 115

Query: 137 LETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYL------HV 190
            +    +++ EY E   L   +    +       +   + +  GIA  + YL      H 
Sbjct: 116 SKYKPMMIITEYMENGALDKFL----REKDGEFSVLQLVGMLRGIAAGMKYLANMNYVH- 170

Query: 191 GFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA-----WTYSA 245
              R +   N     IL N   V K+ DF  S  + +      T S  G      WT  A
Sbjct: 171 ---RDLAARN-----ILVNSNLVCKVSDFGLSRVLEDDPEATYTTS--GGKIPIRWT--A 218

Query: 246 PEYKRGGVFNEKLDVYTFSTVLLELLT 272
           PE      F    DV++F  V+ E++T
Sbjct: 219 PEAISYRKFTSASDVWSFGIVMWEVMT 245

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 52.6 bits (127), Expect = 6e-08
 Identities = 44/164 (26%), Positives = 71/164 (43%), Gaps = 23/164 (14%)

Query: 121 AAQMDHKHILKL--IGC--CLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLK 176
           AA ++H  I+ +   G       P+P +V EY +  TLRD +         P+  K  ++
Sbjct: 66  AAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIV----HTEG-PMTPKRAIE 120

Query: 177 VAMGIAHALAYLHVGFPRPIVF-----GNLISLCILFNEENVAKLFDFSESISIPEGETH 231
           V      AL + H      I+       N     I+ +  N  K+ DF  + +I +    
Sbjct: 121 VIADACQALNFSH---QNGIIHRDVKPAN-----IMISATNAVKVMDFGIARAIADSGNS 172

Query: 232 I-ITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
           +  T +  G   Y +PE  RG   + + DVY+   VL E+LTG+
Sbjct: 173 VTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGE 216

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 40/220 (18%), Positives = 82/220 (37%), Gaps = 61/220 (27%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
           K +K+ +T+  ++    E  + ++              I +        H +++ L+G C
Sbjct: 63  KMLKEGATHSEHRALMSE--LKILI------------HIGH--------HLNVVNLLGAC 100

Query: 137 LETPIPI-LVFEYGEYTTLRD-----------RIFGAPQPHFEPLLLKHRLKVAMGIAHA 184
            +   P+ ++ E+ ++  L                     + + L L+H +  +  +A  
Sbjct: 101 TKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKG 160

Query: 185 LAYL------HVGFPRPIVFGNLISLCILFNEENVAKLFDF--SESISIPEGETHIITRS 236
           + +L      H    R +   N     IL +E+NV K+ DF  +  I     +     R 
Sbjct: 161 MEFLASRKCIH----RDLAARN-----ILLSEKNVVKICDFGLARDIY----KDPDYVRK 207

Query: 237 RFGA----WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
                   W   APE     V+  + DV++F  +L E+ +
Sbjct: 208 GDARLPLKWM--APETIFDRVYTIQSDVWSFGVLLWEIFS 245

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 42/173 (24%), Positives = 64/173 (36%), Gaps = 36/173 (20%)

Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEY----TTLRDR-------IFGAPQPHFEPLL 170
             + H+HI+K  G C +    I+VFEY ++      LR         + G P+     L 
Sbjct: 72  TNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELG 131

Query: 171 LKHRLKVAMGIAHALAYL------HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS 224
           L   L +A  IA  + YL      H    R +   N      L     + K+ DF  S  
Sbjct: 132 LSQMLHIASQIASGMVYLASQHFVH----RDLATRN-----CLVGANLLVKIGDFGMSRD 182

Query: 225 IPEGETHIITRSRFGA-----WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           +   + +   R          W    PE      F  + DV++F  +L E+ T
Sbjct: 183 VYSTDYY---RVGGHTMLPIRWM--PPESIMYRKFTTESDVWSFGVILWEIFT 230

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 45/257 (17%), Positives = 83/257 (32%), Gaps = 51/257 (19%)

Query: 49  ASSHGKYNPYRIFSAKELEIATNNYDERKFI-----------KQDSTYKLYKGFWQERLI 97
             S G+ N Y  F    + I   +Y   + +           +       Y         
Sbjct: 9   HHSSGRENLY--FQGHMVIIDNKHYLFIQKLGEGGFSYVDLVEGLHDGHFY--------- 57

Query: 98  SVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIP----ILVFEYGEYTT 153
             +K    +     + +          +H +IL+L+  CL          L+  + +  T
Sbjct: 58  -ALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGT 116

Query: 154 LRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIV-----FGNLISLCILF 208
           L + I          L     L + +GI   L  +H    +          N     IL 
Sbjct: 117 LWNEIERLKDKG-NFLTEDQILWLLLGICRGLEAIH---AKGYAHRDLKPTN-----ILL 167

Query: 209 NEENVAKLFDF---SESISIPEGETHIIT----RSRFGAWTYSAPE---YKRGGVFNEKL 258
            +E    L D    +++    EG    +T     ++    +Y APE    +   V +E+ 
Sbjct: 168 GDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERT 227

Query: 259 DVYTFSTVLLELLTGQS 275
           DV++   VL  ++ G+ 
Sbjct: 228 DVWSLGCVLYAMMFGEG 244

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 46/228 (20%), Positives = 81/228 (35%), Gaps = 53/228 (23%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
           K +K D+T K       E  + +MK                        HK+I+ L+G C
Sbjct: 107 KMLKSDATEKDLSDLISE--MEMMK----------MIG----------KHKNIINLLGAC 144

Query: 137 LETPIPILVFEYGEYTTLRD-----------RIFGAPQPHFEPLLLKHRLKVAMGIAHAL 185
            +     ++ EY     LR+             +       E L  K  +  A  +A  +
Sbjct: 145 TQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGM 204

Query: 186 AYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA----- 240
            YL     +  +  +L +  +L  E+NV K+ DF  +  I   + +   +          
Sbjct: 205 EYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYY---KKTTNGRLPVK 258

Query: 241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-------GQSTRDLLR 281
           W   APE     ++  + DV++F  +L E+ T       G    +L +
Sbjct: 259 WM--APEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFK 304

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 47/234 (20%), Positives = 81/234 (34%), Gaps = 65/234 (27%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
           K +K D+T K       E  + +MK                        HK+I+ L+G C
Sbjct: 119 KMLKDDATEKDLSDLVSE--MEMMK----------MIG----------KHKNIINLLGAC 156

Query: 137 LETPIPILVFEYGEYTTLRD-----------RIFGAPQPHFEPLLLKHRLKVAMGIAHAL 185
            +     ++ EY     LR+             +   +   E +  K  +     +A  +
Sbjct: 157 TQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGM 216

Query: 186 AYL------HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRS--- 236
            YL      H    R +   N     +L  E NV K+ DF  +  I   + +  T +   
Sbjct: 217 EYLASQKCIH----RDLAARN-----VLVTENNVMKIADFGLARDINNIDYYKKTTNGRL 267

Query: 237 --RFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-------GQSTRDLLR 281
             +   W   APE     V+  + DV++F  ++ E+ T       G    +L +
Sbjct: 268 PVK---WM--APEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFK 316

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 37/214 (17%), Positives = 71/214 (33%), Gaps = 48/214 (22%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
           K +K  +     +    E  + V+                        +H +I+ L+G C
Sbjct: 59  KMLKPSAHLTEREALMSE--LKVLS----------YLG----------NHMNIVNLLGAC 96

Query: 137 LETPIPILVFEYGEYTTLRD-------------RIFGAPQPHFEPLLLKHRLKVAMGIAH 183
                 +++ EY  Y  L +                   +     L L+  L  +  +A 
Sbjct: 97  TIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAK 156

Query: 184 ALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA--- 240
            +A+L     +  +  +L +  IL     + K+ DF  +  I     +     +  A   
Sbjct: 157 GMAFLA---SKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNY---VVKGNARLP 210

Query: 241 --WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
             W   APE     V+  + DV+++   L EL +
Sbjct: 211 VKWM--APESIFNCVYTFESDVWSYGIFLWELFS 242

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 45/233 (19%), Positives = 77/233 (33%), Gaps = 66/233 (28%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
           K +K+ ++   ++ F  E  + V+           K             H +I+ L+G C
Sbjct: 58  KRMKEYASKDDHRDFAGE--LEVLC----------KLG----------HHPNIINLLGAC 95

Query: 137 LETPIPILVFEYGEYTTLRD-----------RIFGAPQPHFEPLLLKHRLKVAMGIAHAL 185
                  L  EY  +  L D             F         L  +  L  A  +A  +
Sbjct: 96  EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGM 155

Query: 186 AYL------HVGFPRPIVFGNLISLCILFNEENVAKLFDF----SESISIPEGETHIITR 235
            YL      H    R +   N     IL  E  VAK+ DF     + + + +    +  R
Sbjct: 156 DYLSQKQFIH----RDLAARN-----ILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVR 206

Query: 236 SRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-------GQSTRDLLR 281
                W   A E     V+    DV+++  +L E+++       G +  +L  
Sbjct: 207 -----WM--AIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYE 252

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 49.9 bits (120), Expect = 4e-07
 Identities = 31/218 (14%), Positives = 67/218 (30%), Gaps = 59/218 (27%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
           K +K  +   L + F  E    +                       ++ H +++ L+G  
Sbjct: 45  KTLKDKAEGPLREEFRHE--AMLRA---------------------RLQHPNVVCLLGVV 81

Query: 137 LETPIPILVFEYGEYTTLRD-----------RIFGAPQPHFEPLLLKHRLKVAMGIAHAL 185
            +     ++F Y  +  L +                 +     L     + +   IA  +
Sbjct: 82  TKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGM 141

Query: 186 AYL------HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG 239
            YL      H    + +   N     +L  ++   K+ D      +   +     +    
Sbjct: 142 EYLSSHHVVH----KDLATRN-----VLVYDKLNVKISDLGLFREVYAADY---YKLLGN 189

Query: 240 A-----WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           +     W   APE    G F+   D++++  VL E+ +
Sbjct: 190 SLLPIRWM--APEAIMYGKFSIDSDIWSYGVVLWEVFS 225

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 7e-07
 Identities = 61/422 (14%), Positives = 106/422 (25%), Gaps = 164/422 (38%)

Query: 6   FLINQFAVRP-QPQMGSIL------------TKFKDRTDKRTLMVRNGARVLKELIASS- 51
           FL++       QP M + +              F      R        + L EL  +  
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 52  ---HG--------------------KYNPYRIF--------SAKE-LEIATN-------N 72
               G                        ++IF        S +  LE+          N
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 73  YDERKFIKQDSTYKLYKGFWQE---RLISVMKYNESYSDSACKFSINNIVYAAQMDH--- 126
           +  R      S  KL     Q    RL+    Y               +V    + +   
Sbjct: 213 WTSR--SDHSSNIKLRIHSIQAELRRLLKSKPYENCL-----------LV----LLNVQN 255

Query: 127 KHILKL--IGCCLETPIPILVFEYGEYTTLRDR-----IFGAPQPH---------FEP-- 168
                   + C       IL+      TT R +     +  A   H           P  
Sbjct: 256 AKAWNAFNLSC------KILL------TT-RFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 169 ---LLLK----------------HRLKVAMGIAHALA--------YLHVGFPRPIVFGNL 201
              LLLK                +  ++++ IA ++         + HV   +      +
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCDK---LTTI 358

Query: 202 ISLCI-LFNEENVAKLFD----FSESISIPEGETHIITRSRFGAWTYSAPE--------Y 248
           I   + +       K+FD    F  S  IP     +I       W               
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI-------WFDVIKSDVMVVVNKL 411

Query: 249 KRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIE-Y--LKNYLQNNRFTEI 305
            +  +  ++    T S   + L       +    H   R +++ Y   K +  ++     
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALH---RSIVDHYNIPKTFDSDDLIPPY 468

Query: 306 AD 307
            D
Sbjct: 469 LD 470

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 53/327 (16%), Positives = 92/327 (28%), Gaps = 99/327 (30%)

Query: 57  PYRIFSAKELE--IATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFS 114
           P  I S +E++  I + +           T +L   FW      + K  E       KF 
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSG-------TLRL---FW----TLLSKQEEMVQ----KF- 82

Query: 115 INNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQ---PHF----E 167
              +    ++++K ++  I    E   P +      Y   RDR++   Q    +     +
Sbjct: 83  ---VEEVLRINYKFLMSPIK--TEQRQPSM--MTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135

Query: 168 PLL-LKH---RLKVAMGIA-H--------ALAY-------LHVGFPRPIV---FGN---- 200
           P L L+     L+ A  +            +A        +       I      N    
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 201 ------LISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRG--- 251
                 L  L     + N     D S +I +         R         +  Y+     
Sbjct: 196 ETVLEMLQKLLYQI-DPNWTSRSDHSSNIKLRIHSIQAELRRLL-----KSKPYENCLLV 249

Query: 252 --GVFNEK-LDVYTFS-TVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIAD 307
              V N K  + +  S  +LL      +TR        V        ++L     T I+ 
Sbjct: 250 LLNVQNAKAWNAFNLSCKILL------TTRFK-----QV-------TDFLSAATTTHISL 291

Query: 308 PIIVQDLSCTETEHQFQACARLTLECL 334
                 L+  E +           + L
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDL 318

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 47/242 (19%), Positives = 82/242 (33%), Gaps = 74/242 (30%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
           K +K++++    +    E   +V+K                     Q++H H++KL G C
Sbjct: 59  KMLKENASPSELRDLLSE--FNVLK---------------------QVNHPHVIKLYGAC 95

Query: 137 LETPIPILVFEYGEYTTLRD-------------------RIFGAPQPHFEPLLLKHRLKV 177
            +    +L+ EY +Y +LR                           P    L +   +  
Sbjct: 96  SQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISF 155

Query: 178 AMGIAHALAYL------HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH 231
           A  I+  + YL      H    R +   N     IL  E    K+ DF  S  + E +++
Sbjct: 156 AWQISQGMQYLAEMKLVH----RDLAARN-----ILVAEGRKMKISDFGLSRDVYEEDSY 206

Query: 232 IITRSRFGA-----WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-------GQSTRDL 279
                R        W   A E     ++  + DV++F  +L E++T       G     L
Sbjct: 207 ---VKRSQGRIPVKWM--AIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERL 261

Query: 280 LR 281
             
Sbjct: 262 FN 263

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 16/157 (10%)

Query: 123 QMDHKHILKLIGCCLETPIP----ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVA 178
            + H +I++       T       +LV E     TL+  +       F+ + +K      
Sbjct: 81  GLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYL-----KRFKVMKIKVLRSWC 135

Query: 179 MGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN-VAKLFDFSESISIPEGETHIITRSR 237
             I   L +LH   P PI+  +L    I         K+ D   +          +  + 
Sbjct: 136 RQILKGLQFLHTRTP-PIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTP 194

Query: 238 FGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
              +   APE       +E +DVY F   +LE+ T +
Sbjct: 195 E--FM--APEMYEEKY-DESVDVYAFGMCMLEMATSE 226

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 46/226 (20%), Positives = 78/226 (34%), Gaps = 67/226 (29%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
           K +K++++  +   F +E   ++M                      + D+ +I+KL+G C
Sbjct: 83  KMLKEEASADMQADFQRE--AALMA---------------------EFDNPNIVKLLGVC 119

Query: 137 LETPIPILVFEYGEY----TTLRDR---------------IFGAPQPHFEPLLLKHRLKV 177
                  L+FEY  Y      LR                       P   PL    +L +
Sbjct: 120 AVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCI 179

Query: 178 AMGIAHALAYL------HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH 231
           A  +A  +AYL      H    R +   N      L  E  V K+ DF  S +I   + +
Sbjct: 180 ARQVAAGMAYLSERKFVH----RDLATRN-----CLVGENMVVKIADFGLSRNIYSADYY 230

Query: 232 IITRSRFGA-----WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
              ++         W    PE      +  + DV+ +  VL E+ +
Sbjct: 231 ---KADGNDAIPIRWM--PPESIFYNRYTTESDVWAYGVVLWEIFS 271

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 45.7 bits (109), Expect = 8e-06
 Identities = 34/168 (20%), Positives = 62/168 (36%), Gaps = 34/168 (20%)

Query: 125 DHKHILKLIGCCLETPIPILVFEYGEYTTLRD---------RIFGAPQPHFEPLLLKHRL 175
            H++I+ L+G C      +++ EY  Y  L +             A          +  L
Sbjct: 108 QHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLL 167

Query: 176 KVAMGIAHALAYL------HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGE 229
             +  +A  +A+L      H    R +   N     +L    +VAK+ DF  +  I    
Sbjct: 168 HFSSQVAQGMAFLASKNCIH----RDVAARN-----VLLTNGHVAKIGDFGLARDIMNDS 218

Query: 230 THIITRSRFGA-----WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
            +     +  A     W   APE     V+  + DV+++  +L E+ +
Sbjct: 219 NY---IVKGNARLPVKWM--APESIFDCVYTVQSDVWSYGILLWEIFS 261

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 45.8 bits (108), Expect = 1e-05
 Identities = 22/170 (12%), Positives = 51/170 (30%), Gaps = 35/170 (20%)

Query: 124 MDHKHILKLIGCCLETPIPILVFEY----GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAM 179
              K ++++     +  +    F Y        T  + +      H + L+   RL++ +
Sbjct: 155 PQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTH-KSLVHHARLQLTL 213

Query: 180 GIAHALAYLHVGFPRPIVFG-----NLISLCILFNEENVAKLFDFSESISIPEGETHIIT 234
            +   LA LH      +V       +     I+ ++     L  F     + +G   + +
Sbjct: 214 QVIRLLASLHH---YGLVHTYLRPVD-----IVLDQRGGVFLTGF--EHLVRDGARVVSS 263

Query: 235 RSRFGAWTYSAPEY-----------KRGGVFNEKLDVYTFSTVLLELLTG 273
                +  +  PE             R  +     D +    V+  +   
Sbjct: 264 ----VSRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCA 309

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 45.8 bits (108), Expect = 1e-05
 Identities = 39/210 (18%), Positives = 74/210 (35%), Gaps = 46/210 (21%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
           K  +Q+ + K  + +  E  I +MK                     +++H +++      
Sbjct: 45  KQCRQELSPKNRERWCLE--IQIMK---------------------KLNHPNVVSAR-EV 80

Query: 137 LETP-------IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLH 189
            +         +P+L  EY E   LR  +      +   L       +   I+ AL YLH
Sbjct: 81  PDGLQKLAPNDLPLLAMEYCEGGDLRKYL--NQFENCCGLKEGPIRTLLSDISSALRYLH 138

Query: 190 VGFPRPIVF-----GNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYS 244
                 I+       N+  +     +  + K+ D   +  + +GE   +     G   Y 
Sbjct: 139 ---ENRIIHRDLKPENI--VLQPGPQRLIHKIIDLGYAKELDQGE---LCTEFVGTLQYL 190

Query: 245 APEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
           APE      +   +D ++F T+  E +TG 
Sbjct: 191 APELLEQKKYTVTVDYWSFGTLAFECITGF 220

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 43.5 bits (102), Expect = 5e-05
 Identities = 15/135 (11%), Positives = 33/135 (24%), Gaps = 13/135 (9%)

Query: 144 LVFEY--GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNL 201
           L+      +   L   +            +     +   +    A L     + +V G+ 
Sbjct: 165 LLMPAASVDLELLFSTLDFVYVFR-GDEGILALHILTAQLIRLAANLQ---SKGLVHGHF 220

Query: 202 ISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEY--KRGGVFNEKLD 259
               +    +    L D   S     G       +     TY+  E+       F   L+
Sbjct: 221 TPDNLFIMPDGRLMLGDV--SALWKVGTR---GPASSVPVTYAPREFLNASTATFTHALN 275

Query: 260 VYTFSTVLLELLTGQ 274
            +     +  +    
Sbjct: 276 AWQLGLSIYRVWCLF 290

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 33/210 (15%), Positives = 69/210 (32%), Gaps = 16/210 (7%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
            +++        +            +  S        S+           K+ +  +   
Sbjct: 72  AWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMD-PFSTKNTVGQLQPS 130

Query: 137 LETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPI 196
                  +  +      L+D +    +   E       L + + IA A+ +LH    + +
Sbjct: 131 SPKVYLYIQMQLCRKENLKDWM--NRRCSLEDREHGVCLHIFIQIAEAVEFLH---SKGL 185

Query: 197 VFGNLISLCILFNEENVAKLFDF----------SESISIPEGETHIITRSRFGAWTYSAP 246
           +  +L    I F  ++V K+ DF           E   +     +     + G   Y +P
Sbjct: 186 MHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSP 245

Query: 247 EYKRGGVFNEKLDVYTFSTVLLELLTGQST 276
           E   G  ++ K+D+++   +L ELL   ST
Sbjct: 246 EQIHGNNYSHKVDIFSLGLILFELLYSFST 275

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 15/156 (9%), Positives = 39/156 (25%), Gaps = 43/156 (27%)

Query: 121 AAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMG 180
            +++D   + +++         ++V E+    +L++    +P P          ++    
Sbjct: 85  LSRIDKPGVARVLDVVHTRAGGLVVAEWIRGGSLQEVADTSPSPV-------GAIRAMQS 137

Query: 181 IAHALAYLH-VGFP-RPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRF 238
           +A A    H  G               +  + +    L   +                  
Sbjct: 138 LAAAADAAHRAGVALSIDHPSR-----VRVSIDGDVVLAYPA------------------ 174

Query: 239 GAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
                      +        D+      L  LL  +
Sbjct: 175 ----TMPDANPQD-------DIRGIGASLYALLVNR 199

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 38/225 (16%), Positives = 69/225 (30%), Gaps = 65/225 (28%)

Query: 77  KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC 136
           K +K+ +     +    E  + +M           +             H++I+ L+G C
Sbjct: 81  KMLKEKADSSEREALMSE--LKMMT----------QLG----------SHENIVNLLGAC 118

Query: 137 LETPIPILVFEYGEYTTLRD------------------RIFGAPQPHFEPLLLKHRLKVA 178
             +    L+FEY  Y  L +                  +     +     L  +  L  A
Sbjct: 119 TLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFA 178

Query: 179 MGIAHALAYL-HVGF------PRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH 231
             +A  + +L            R     N     +L     V K+ DF  +  I      
Sbjct: 179 YQVAKGMEFLEFKSCVHRDLAAR-----N-----VLVTHGKVVKICDFGLARDI--MSDS 226

Query: 232 IITRSRFGA----WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
                        W   APE    G++  K DV+++  +L E+ +
Sbjct: 227 NYVVRGNARLPVKWM--APESLFEGIYTIKSDVWSYGILLWEIFS 269

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 21/147 (14%), Positives = 42/147 (28%), Gaps = 34/147 (23%)

Query: 146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLH-VGF------PRPIVF 198
                  T  + +      H + L+   RL++ + +   LA LH  G       P     
Sbjct: 186 RMQSNLQTFGEVLLSHSSTH-KSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRP----- 239

Query: 199 GNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEY---------- 248
            +     I+ ++     L  F     + +G +     S  G   ++ PE           
Sbjct: 240 VD-----IVLDQRGGVFLTGF--EHLVRDGAS---AVSPIGR-GFAPPETTAERMLPFGQ 288

Query: 249 KRGGVFNEKLDVYTFSTVLLELLTGQS 275
               +     D +T    +  +     
Sbjct: 289 HHPTLMTFAFDTWTLGLAIYWIWCADL 315

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 7/157 (4%)

Query: 122 AQMDHKHILKLIGCCLETPIPIL--VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAM 179
            ++ H +I++     ++     L  V EY E   L   I    +   + L  +  L+V  
Sbjct: 60  RELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKER-QYLDEEFVLRVMT 118

Query: 180 GIAHALAYLH--VGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSR 237
            +  AL   H        ++  +L    +  + +   KL DF   ++          ++ 
Sbjct: 119 QLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDF--GLARILNHDTSFAKTF 176

Query: 238 FGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
            G   Y +PE      +NEK D+++   +L EL    
Sbjct: 177 VGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALM 213

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 10/154 (6%)

Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHF-EPLLLKHRLKVAMG 180
           A M H +I++      E     +V +Y E   L  RI       F E  +    L   + 
Sbjct: 78  ANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQI----LDWFVQ 133

Query: 181 IAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA 240
           I  AL ++H    R I+  ++ S  I   ++   +L DF   I+     T  + R+  G 
Sbjct: 134 ICLALKHVH---DRKILHRDIKSQNIFLTKDGTVQLGDF--GIARVLNSTVELARACIGT 188

Query: 241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
             Y +PE      +N K D++    VL EL T +
Sbjct: 189 PYYLSPEICENKPYNNKSDIWALGCVLYELCTLK 222

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 33/154 (21%), Positives = 61/154 (39%), Gaps = 19/154 (12%)

Query: 125 DHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHA 184
           +  +I+   G         +  E+ +  +L D++        E +L K    V++ +   
Sbjct: 89  NSPYIVGFYGAFYSDGEISICMEHMDGGSL-DQVLKKAGRIPEQILGK----VSIAVIKG 143

Query: 185 LAYLHVGFP---RPIVFGNLISLCILFNEENVAKLFDFSESISIPEGE-THIITRSRFGA 240
           L YL        R +   N     IL N     KL DF  S     G+    +  S  G 
Sbjct: 144 LTYLREKHKIMHRDVKPSN-----ILVNSRGEIKLCDFGVS-----GQLIDSMANSFVGT 193

Query: 241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
            +Y +PE  +G  ++ + D+++    L+E+  G+
Sbjct: 194 RSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 227

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	338
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
2dyl_A	318	Dual specificity mitogen-activated protein kinase	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	100.0
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	100.0
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	100.0
3uqc_A	286	Probable conserved transmembrane protein; structur	100.0
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	100.0
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	100.0
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	100.0
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.96
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.93
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.84
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.76
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.46
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.33
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	99.33
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	99.17
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.9
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.68
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.64
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	98.63
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.52
3ats_A	357	Putative uncharacterized protein; hypothetical pro	98.4
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	98.24
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	98.2
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	97.98
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	97.96
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.67
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	97.64
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	97.6
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	97.58
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	97.55
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	97.43
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	97.34
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	97.33
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	97.1
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	97.03
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	96.65
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	96.11
3mes_A	424	Choline kinase; malaria, structural genomics, stru	95.95
4ann_A	215	ESSB; membrane protein, membrane secretion, ESS ty	92.95
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	89.84
4ano_A	219	ESSB; membrane protein, membrane secretion, ESS ty	89.41
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	80.24

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=2.1e-57  Score=404.80  Aligned_cols=209  Identities=21%  Similarity=0.257  Sum_probs=176.2

Q ss_pred             HHHHhhcCCCcCCccccCCCceEEEEEECCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcce
Q 038823           65 ELEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        65 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      .|+...+++.+.+.||+|+||+||+|++.+ .||||+++... +....+.|.+|+.+|++++|||||+++|+|.+ +.++
T Consensus        30 ~Wei~~~~l~l~~~iG~G~fG~Vy~~~~~~-~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~  107 (307)
T 3omv_A           30 YWEIEASEVMLSTRIGSGSFGTVYKGKWHG-DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLA  107 (307)
T ss_dssp             CCBCCTTSCCEEEECCCCSSSEEEEEESSS-EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCE
T ss_pred             CcEEcHHHeEEeeEEeeCCCcEEEEEEECC-cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEE
Confidence            356667888899999999999999999855 58999987543 45566889999999999999999999999865 5689


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      +|||||++|+|.++|.....    .+++.+++.++.||+.||.|||   +.+||||||||+|||+++++.+||+|||+|+
T Consensus       108 iVmEy~~gGsL~~~l~~~~~----~l~~~~~~~i~~qia~gL~yLH---~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~  180 (307)
T 3omv_A          108 IVTQWCEGSSLYKHLHVQET----KFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKIGDFGLAT  180 (307)
T ss_dssp             EEEECCSSCBHHHHHHTSCC----CCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCSSSEEEETTEEEEECCCSSCB
T ss_pred             EEEEcCCCCCHHHHHhhcCC----CCCHHHHHHHHHHHHHHHHHHH---HCCccCCccCHHHEEECCCCcEEEeeccCce
Confidence            99999999999999976543    6999999999999999999999   8999999999999999999999999999998


Q ss_pred             ccCCCCceeeeecccccCCccccccccc---CCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYKRG---GVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ...............||+.|||||++..   +.|+.++|||||||++|||+||+.||...+.
T Consensus       181 ~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~  242 (307)
T 3omv_A          181 VKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINN  242 (307)
T ss_dssp             C------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCC
T ss_pred             ecccCCcceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCCh
Confidence            7655433333356689999999999863   4699999999999999999999999986443

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=5.1e-58  Score=408.49  Aligned_cols=244  Identities=23%  Similarity=0.282  Sum_probs=198.0

Q ss_pred             hcCCCcCCccccCCCceEEEEEE-------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcc
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW-------QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIP  142 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~-------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~  142 (338)
                      .++|.+.+.||+|+||+||+|.+       ++..||||+++.. +....+.|.+|+++|++++|||||+++|+|.+++.+
T Consensus        12 r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~-~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~   90 (299)
T 4asz_A           12 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA-SDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPL   90 (299)
T ss_dssp             GGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSE
T ss_pred             HHHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCC-ChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEE
Confidence            45788889999999999999986       3678999999865 555668899999999999999999999999999999


Q ss_pred             eEEEeecCCCCHHHhhhcCC--------CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCce
Q 038823          143 ILVFEYGEYTTLRDRIFGAP--------QPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVA  214 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~--------~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~  214 (338)
                      ++|||||++|+|.++|....        ......++|.+++.++.||+.||.|||   +++|+||||||+|||+++++.+
T Consensus        91 ~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDlKp~NILl~~~~~~  167 (299)
T 4asz_A           91 IMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLA---SQHFVHRDLATRNCLVGENLLV  167 (299)
T ss_dssp             EEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCE
T ss_pred             EEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCccCHhhEEECCCCcE
Confidence            99999999999999997642        111236999999999999999999999   8999999999999999999999


Q ss_pred             EEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccCCcccccHHHHH
Q 038823          215 KLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRTHGSVRHLIEYL  293 (338)
Q Consensus       215 kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~~~~~~~l~~~~  293 (338)
                      ||+|||+|+...............||+.|||||++.+..++.++|||||||++|||+| |+.||.....    ..+... 
T Consensus       168 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~----~~~~~~-  242 (299)
T 4asz_A          168 KIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN----NEVIEC-  242 (299)
T ss_dssp             EECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH----HHHHHH-
T ss_pred             EECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCH----HHHHHH-
Confidence            9999999987765544443345679999999999999999999999999999999999 9999986443    222222 


Q ss_pred             HHHHhcCccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          294 KNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       294 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                         +..+...+.     .        ..+..++.+|+.+||+.||
T Consensus       243 ---i~~~~~~~~-----p--------~~~~~~~~~li~~cl~~dP  271 (299)
T 4asz_A          243 ---ITQGRVLQR-----P--------RTCPQEVYELMLGCWQREP  271 (299)
T ss_dssp             ---HHHTCCCCC-----C--------TTCCHHHHHHHHHHTCSSG
T ss_pred             ---HHcCCCCCC-----C--------ccchHHHHHHHHHHcCCCh
Confidence               222221110     0        1123458888999999887

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=5.2e-57  Score=403.66  Aligned_cols=244  Identities=17%  Similarity=0.229  Sum_probs=198.4

Q ss_pred             cCCCcCCccccCCCceEEEEEE-------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcce
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW-------QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~-------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      .++.+.+.||+|+||+||+|.+       +++.||||++.........+.|.+|+.++++++|||||+++|+|.+.+.++
T Consensus        26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~  105 (308)
T 4gt4_A           26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS  105 (308)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred             HHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEE
Confidence            3455678899999999999986       457899999987655555688999999999999999999999999999999


Q ss_pred             EEEeecCCCCHHHhhhcCCCC-----------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC
Q 038823          144 LVFEYGEYTTLRDRIFGAPQP-----------HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN  212 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~-----------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~  212 (338)
                      +|||||++|+|.++|......           ....+++..++.++.|||.||.|||   +.+||||||||+|||+++++
T Consensus       106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLK~~NILl~~~~  182 (308)
T 4gt4_A          106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLS---SHHVVHKDLATRNVLVYDKL  182 (308)
T ss_dssp             EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGG
T ss_pred             EEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCccccceEECCCC
Confidence            999999999999999654211           1136999999999999999999999   89999999999999999999


Q ss_pred             ceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccCCcccccHHH
Q 038823          213 VAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRTHGSVRHLIE  291 (338)
Q Consensus       213 ~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~~~~~~~l~~  291 (338)
                      .+||+|||+|+...............||+.|||||++.++.++.++|||||||++|||+| |+.||.....    ..+..
T Consensus       183 ~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~----~~~~~  258 (308)
T 4gt4_A          183 NVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN----QDVVE  258 (308)
T ss_dssp             CEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCH----HHHHH
T ss_pred             CEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCH----HHHHH
Confidence            999999999987655443333356679999999999999999999999999999999999 8999986443    22222


Q ss_pred             HHHHHHhcCccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          292 YLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       292 ~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                          .+..+...+.             ...+..++.+|+.+||+.||
T Consensus       259 ----~i~~~~~~~~-------------p~~~~~~~~~li~~C~~~dP  288 (308)
T 4gt4_A          259 ----MIRNRQVLPC-------------PDDCPAWVYALMIECWNEFP  288 (308)
T ss_dssp             ----HHHTTCCCCC-------------CTTCCHHHHHHHHHHTCSSG
T ss_pred             ----HHHcCCCCCC-------------cccchHHHHHHHHHHcCCCh
Confidence                2223222111             11234568899999999998

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=7.4e-57  Score=406.25  Aligned_cols=208  Identities=23%  Similarity=0.255  Sum_probs=173.5

Q ss_pred             hcCCCcCCccccCCCceEEEEEE-------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcc
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW-------QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIP  142 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~-------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~  142 (338)
                      .++|.+.+.||+|+||+||+|.+       ++..||||++... +....+.|.+|+.+|++++|||||+++|+|.+.+.+
T Consensus        40 ~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~-~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~  118 (329)
T 4aoj_A           40 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA-SESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPL  118 (329)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCC-SHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSE
T ss_pred             HHHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcC-CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEE
Confidence            35677788999999999999986       3678999999865 555668899999999999999999999999999999


Q ss_pred             eEEEeecCCCCHHHhhhcCCCC----------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQP----------HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN  212 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~----------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~  212 (338)
                      ++|||||++|+|.+++......          ...+++|.+++.++.||+.||.|||   +.+||||||||+|||+++++
T Consensus       119 ~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLKp~NILl~~~~  195 (329)
T 4aoj_A          119 LMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLA---GLHFVHRDLATRNCLVGQGL  195 (329)
T ss_dssp             EEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTT
T ss_pred             EEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecccccHhhEEECCCC
Confidence            9999999999999999764321          1236999999999999999999999   89999999999999999999


Q ss_pred             ceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          213 VAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       213 ~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      .+||+|||+|+...............||+.|||||++.+..++.++|||||||++|||+| |+.||....
T Consensus       196 ~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~  265 (329)
T 4aoj_A          196 VVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLS  265 (329)
T ss_dssp             EEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSC
T ss_pred             cEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCC
Confidence            999999999987765544433356679999999999999999999999999999999999 999998644

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=2.6e-56  Score=397.13  Aligned_cols=203  Identities=16%  Similarity=0.177  Sum_probs=183.5

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      .++|++.+.||+|+||+||+|..  +++.||+|++.+..  .....+.+.+|+++|++++|||||++++++.+.+.+|+|
T Consensus        31 ~~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yiv  110 (311)
T 4aw0_A           31 PEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFG  110 (311)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            35799999999999999999999  78999999997542  223457789999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||++||+|.+++.+.+     .+++..+..++.||+.||.|||   +++|+||||||+|||++.++.+||+|||+|+..
T Consensus       111 mEy~~gG~L~~~i~~~~-----~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~  182 (311)
T 4aw0_A          111 LSYAKNGELLKYIRKIG-----SFDETCTRFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVL  182 (311)
T ss_dssp             ECCCTTEEHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             EecCCCCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEEcCCCCEEEEEcCCceec
Confidence            99999999999998764     6999999999999999999999   899999999999999999999999999999987


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ............+||+.|||||++.+..|+.++||||+||++|||+||++||...
T Consensus       183 ~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~  237 (311)
T 4aw0_A          183 SPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAG  237 (311)
T ss_dssp             CTTTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CCCCCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            6544333336678999999999999999999999999999999999999999753

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=4.7e-56  Score=401.75  Aligned_cols=202  Identities=22%  Similarity=0.201  Sum_probs=175.2

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      ++|.+.+.||+|+||+||+|.+  +|+.||||++.... .....+.+.+|+.+|++++|||||++++++.+.+.+|+|||
T Consensus        24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE  103 (350)
T 4b9d_A           24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD  103 (350)
T ss_dssp             CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence            5789999999999999999998  78999999997553 44556789999999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      ||+||+|.++|.....   ..+++..+..++.||+.||.|||   +.+|+||||||+|||++.+|.+||+|||+|+....
T Consensus       104 y~~gg~L~~~i~~~~~---~~~~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~  177 (350)
T 4b9d_A          104 YCEGGDLFKRINAQKG---VLFQEDQILDWFVQICLALKHVH---DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNS  177 (350)
T ss_dssp             CCTTCBHHHHHHHTTT---CCCCHHHHHHHHHHHHHHHHHHH---HTTCEETTCCGGGEEECTTCCEEECSTTEESCCCH
T ss_pred             CCCCCcHHHHHHHcCC---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHHHEEECCCCCEEEcccccceeecC
Confidence            9999999999976543   25899999999999999999999   89999999999999999999999999999987653


Q ss_pred             CCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ...  .....+||+.|||||++.+..|+.++|||||||++|||+||+.||...
T Consensus       178 ~~~--~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~  228 (350)
T 4b9d_A          178 TVE--LARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAG  228 (350)
T ss_dssp             HHH--HHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             Ccc--cccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence            221  114557999999999999999999999999999999999999999753

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=1.7e-55  Score=397.52  Aligned_cols=198  Identities=18%  Similarity=0.243  Sum_probs=178.7

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      ..|+..+.||+|+||+||+|.+  +|+.||||++.... ....+.+.+|+.+|++++|||||++++++.+.+.+|+||||
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~-~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy  152 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRK-QQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF  152 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGG-CSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCc-hhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeC
Confidence            5688899999999999999999  78999999997542 22335688999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      |+||+|.+++.+.      .+++..+..++.||+.||.|||   +.+|+||||||+|||++.+|.+||+|||+|+.....
T Consensus       153 ~~gg~L~~~l~~~------~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~  223 (346)
T 4fih_A          153 LEGGALTDIVTHT------RMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE  223 (346)
T ss_dssp             CTTEEHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSS
T ss_pred             CCCCcHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEECCCCCEEEecCcCceecCCC
Confidence            9999999999763      5999999999999999999999   899999999999999999999999999999877544


Q ss_pred             CceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ...  ....+||+.|||||++.+..|+.++|||||||++|||+||++||...
T Consensus       224 ~~~--~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~  273 (346)
T 4fih_A          224 VPR--RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE  273 (346)
T ss_dssp             SCC--BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             CCc--ccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence            322  25668999999999999999999999999999999999999999753

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=6.8e-55  Score=385.90  Aligned_cols=233  Identities=16%  Similarity=0.179  Sum_probs=187.1

Q ss_pred             CcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeec----CCcceEEE
Q 038823           74 DERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLE----TPIPILVF  146 (338)
Q Consensus        74 ~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~~lv~  146 (338)
                      .+.+.||+|+||+||+|.+  ++..||+|++.... .....+.+.+|+.+|++++|||||++++++.+    .+.+|+||
T Consensus        29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm  108 (290)
T 3fpq_A           29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT  108 (290)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence            4556799999999999999  78899999997543 45556789999999999999999999999864    34589999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--eeecCCCCCceeeCC-CCceEEecCCCCc
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRP--IVFGNLISLCILFNE-ENVAKLFDFSESI  223 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--iiH~dik~~Nill~~-~~~~kl~Dfg~a~  223 (338)
                      |||+||+|.+++.+..     .+++..+..++.||+.||.|||   +.+  |+||||||+|||++. ++.+||+|||+|+
T Consensus       109 Ey~~gg~L~~~l~~~~-----~l~~~~~~~~~~qi~~aL~ylH---~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~  180 (290)
T 3fpq_A          109 ELMTSGTLKTYLKRFK-----VMKIKVLRSWCRQILKGLQFLH---TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLAT  180 (290)
T ss_dssp             ECCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---TSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGG
T ss_pred             eCCCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCCCEEecccChhheeEECCCCCEEEEeCcCCE
Confidence            9999999999998754     6999999999999999999999   777  999999999999984 7999999999998


Q ss_pred             ccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHHHHHHHhcCccc
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFT  303 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~  303 (338)
                      .......    ....||+.|||||++.+ .|+.++|||||||++|||+||+.||.....      ... +...+..+...
T Consensus       181 ~~~~~~~----~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~------~~~-~~~~i~~~~~~  248 (290)
T 3fpq_A          181 LKRASFA----KAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQN------AAQ-IYRRVTSGVKP  248 (290)
T ss_dssp             GCCTTSB----EESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSS------HHH-HHHHHTTTCCC
T ss_pred             eCCCCcc----CCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCc------HHH-HHHHHHcCCCC
Confidence            6544322    45679999999998864 699999999999999999999999975332      111 12222222111


Q ss_pred             cccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          304 EIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       304 ~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                      ...++    .        ...++.+++.+||+.||
T Consensus       249 ~~~~~----~--------~~~~~~~li~~~L~~dP  271 (290)
T 3fpq_A          249 ASFDK----V--------AIPEVKEIIEGCIRQNK  271 (290)
T ss_dssp             GGGGG----C--------CCHHHHHHHHHHSCSSG
T ss_pred             CCCCc----c--------CCHHHHHHHHHHccCCh
Confidence            11111    1        11247889999999987

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=5.6e-56  Score=403.74  Aligned_cols=219  Identities=18%  Similarity=0.280  Sum_probs=191.6

Q ss_pred             cCHHHHHHhhcCCCcCCccccCCCceEEEEEEC-------CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCC-cceeee
Q 038823           61 FSAKELEIATNNYDERKFIKQDSTYKLYKGFWQ-------ERLISVMKYNESYSDSACKFSINNIVYAAQMDH-KHILKL  132 (338)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~-------~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h-~niv~l  132 (338)
                      +..++|+...++|++.+.||+|+||+||+|.+.       ++.||+|.+.........+.+.+|+.+|.++.| ||||++
T Consensus        54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l  133 (353)
T 4ase_A           54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL  133 (353)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             CCCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEE
Confidence            456789999999999999999999999999972       257999999877666667889999999999965 899999


Q ss_pred             eeeeecC-CcceEEEeecCCCCHHHhhhcCCC-----------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecC
Q 038823          133 IGCCLET-PIPILVFEYGEYTTLRDRIFGAPQ-----------PHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGN  200 (338)
Q Consensus       133 ~~~~~~~-~~~~lv~e~~~~gsL~~~l~~~~~-----------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~d  200 (338)
                      +|+|.+. +.+++|||||++|+|.++|.....           .....+++..++.++.|||.||.|||   +++|||||
T Consensus       134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH---~~~iiHRD  210 (353)
T 4ase_A          134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRD  210 (353)
T ss_dssp             EEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSC
T ss_pred             EEEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHh---hCCeecCc
Confidence            9999764 568999999999999999975421           01135899999999999999999999   89999999


Q ss_pred             CCCCceeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCC
Q 038823          201 LISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDL  279 (338)
Q Consensus       201 ik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~  279 (338)
                      |||+|||+++++.+||+|||+|+...............||+.|||||++.+..++.++|||||||++|||+| |+.||..
T Consensus       211 LK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~  290 (353)
T 4ase_A          211 LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG  290 (353)
T ss_dssp             CSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTT
T ss_pred             cCccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCC
Confidence            999999999999999999999998766555555466779999999999999999999999999999999998 9999986


Q ss_pred             ccC
Q 038823          280 LRT  282 (338)
Q Consensus       280 ~~~  282 (338)
                      ...
T Consensus       291 ~~~  293 (353)
T 4ase_A          291 VKI  293 (353)
T ss_dssp             CCC
T ss_pred             CCH
Confidence            543

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=2.5e-54  Score=399.14  Aligned_cols=199  Identities=18%  Similarity=0.242  Sum_probs=179.5

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      .+.|+..+.||+|+||.||+|.+  +|+.||||++.... ....+.+.+|+.+|++++|||||++++++.+.+.+|+|||
T Consensus       150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~-~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmE  228 (423)
T 4fie_A          150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRK-QQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVME  228 (423)
T ss_dssp             GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTT-CSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccc-hhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEe
Confidence            35689999999999999999999  78999999997552 2334668899999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      ||+||+|.+++...      .+++..+..++.||+.||.|||   +.+||||||||+|||++.+|.+||+|||+|+....
T Consensus       229 y~~gG~L~~~i~~~------~l~e~~~~~~~~qil~aL~ylH---~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~  299 (423)
T 4fie_A          229 FLEGGALTDIVTHT------RMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK  299 (423)
T ss_dssp             CCTTEEHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSTTTEEECTTCCEEECCCTTCEECCS
T ss_pred             CCCCCcHHHHHhcc------CCCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEecCccceECCC
Confidence            99999999999754      5999999999999999999999   89999999999999999999999999999987654


Q ss_pred             CCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ....  ....+||+.|||||++.+..|+.++|||||||++|||++|++||...
T Consensus       300 ~~~~--~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~  350 (423)
T 4fie_A          300 EVPR--RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE  350 (423)
T ss_dssp             SCCC--BCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             CCcc--ccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence            4322  25668999999999999999999999999999999999999999753

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=9.5e-55  Score=391.49  Aligned_cols=199  Identities=20%  Similarity=0.181  Sum_probs=173.3

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      .+.|...++||+|+||.||+|++  +|+.||||++.....      ..+|+.+|++++|||||++++++.+++.+|+|||
T Consensus        57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~------~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmE  130 (336)
T 4g3f_A           57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF------RVEELVACAGLSSPRIVPLYGAVREGPWVNIFME  130 (336)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC------CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh------HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence            34577778899999999999998  789999999975422      2479999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC-ceEEecCCCCcccC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN-VAKLFDFSESISIP  226 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~-~~kl~Dfg~a~~~~  226 (338)
                      ||+||+|.+++...+     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.+| .+||+|||+|+...
T Consensus       131 y~~gg~L~~~l~~~~-----~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~  202 (336)
T 4g3f_A          131 LLEGGSLGQLIKQMG-----CLPEDRALYYLGQALEGLEYLH---TRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQ  202 (336)
T ss_dssp             CCTTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC-
T ss_pred             ccCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCceecccCHHHEEEeCCCCEEEEeeCCCCeEcc
Confidence            999999999998754     6999999999999999999999   99999999999999999988 59999999998775


Q ss_pred             CCCce---eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          227 EGETH---IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       227 ~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      .....   ......+||+.|||||++.+..|+.++|||||||++|||+||++||.....
T Consensus       203 ~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~  261 (336)
T 4g3f_A          203 PDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFR  261 (336)
T ss_dssp             -----------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCC
T ss_pred             CCCcccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCH
Confidence            43221   122345799999999999999999999999999999999999999986544

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=3e-54  Score=378.64  Aligned_cols=197  Identities=23%  Similarity=0.290  Sum_probs=163.4

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++|++.+.||+|+||+||+|..  +++.||+|++.+..  .......+.+|+.+|++++|||||++++++.+.+.+|+||
T Consensus        13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm   92 (275)
T 3hyh_A           13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI   92 (275)
T ss_dssp             -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence            5799999999999999999998  78999999997543  2233567899999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+ +|+|.+++...+     .+++..+..++.||+.||.|||   +++|+||||||+|||++.++.+||+|||+|+...
T Consensus        93 Ey~-~g~L~~~l~~~~-----~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~  163 (275)
T 3hyh_A           93 EYA-GNELFDYIVQRD-----KMSEQEARRFFQQIISAVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMT  163 (275)
T ss_dssp             ECC-CEEHHHHHHHSC-----SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTCCEEECCSSCC----
T ss_pred             eCC-CCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCcccccCChHHeEECCCCCEEEeecCCCeecC
Confidence            999 589999998764     6999999999999999999999   8999999999999999999999999999998765


Q ss_pred             CCCceeeeecccccCCcccccccccCCC-CccchHHHHHHHHHHHHhCCCCcCC
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVF-NEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      .....   ....||+.|+|||++.+..+ +.++||||+||++|||+||+.||..
T Consensus       164 ~~~~~---~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~  214 (275)
T 3hyh_A          164 DGNFL---KTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDD  214 (275)
T ss_dssp             --------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             CCCcc---CCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCC
Confidence            43322   45679999999999988876 5899999999999999999999975

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=5.6e-54  Score=384.31  Aligned_cols=253  Identities=19%  Similarity=0.241  Sum_probs=188.7

Q ss_pred             cCCCcCCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCC----cceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETP----IPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~----~~~lv~  146 (338)
                      ++|.+.+.||+|+||+||+|+++|+.||||++....  .....+..|+..+.+++|||||+++|+|.+.+    .++|||
T Consensus         3 r~i~L~~~iG~G~fG~Vy~~~~~g~~VAvK~l~~~~--~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~   80 (303)
T 3hmm_A            3 RTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSRE--ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS   80 (303)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTEEEEEEEECGGG--HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEECCEEEEEEEECccc--hhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEe
Confidence            346777899999999999999999999999997541  11123345666677899999999999998654    479999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC-----CCCCeeecCCCCCceeeCCCCceEEecCCC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVG-----FPRPIVFGNLISLCILFNEENVAKLFDFSE  221 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~-----~~~~iiH~dik~~Nill~~~~~~kl~Dfg~  221 (338)
                      |||++|+|.+++...      ++++..+.+++.|++.||+|||+.     ...+|+||||||+|||++.++.+||+|||+
T Consensus        81 Ey~~~gsL~~~l~~~------~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGl  154 (303)
T 3hmm_A           81 DYHEHGSLFDYLNRY------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL  154 (303)
T ss_dssp             ECCTTCBHHHHHHHC------CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTT
T ss_pred             cCCCCCcHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCC
Confidence            999999999999764      589999999999999999999932     123999999999999999999999999999


Q ss_pred             CcccCCCCcee--eeecccccCCcccccccccC------CCCccchHHHHHHHHHHHHhCCCCcCCccCCcc-------c
Q 038823          222 SISIPEGETHI--ITRSRFGAWTYSAPEYKRGG------VFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGS-------V  286 (338)
Q Consensus       222 a~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~-------~  286 (338)
                      |+.........  ......||+.|||||++.+.      .++.++|||||||++|||+||.+||........       .
T Consensus       155 a~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~  234 (303)
T 3hmm_A          155 AVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPS  234 (303)
T ss_dssp             CEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCS
T ss_pred             CccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccc
Confidence            98775543322  22345799999999998764      367899999999999999999887754322110       0


Q ss_pred             ccHHHHHHHHHhcCccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          287 RHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       287 ~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                      ....+.+......+.+    +|.+...+   ...+++..+.+|+.+||+.||
T Consensus       235 ~~~~~~~~~~~~~~~~----rp~~p~~~---~~~~~~~~l~~li~~cl~~dP  279 (303)
T 3hmm_A          235 DPSVEEMRKVVCEQKL----RPNIPNRW---QSCEALRVMAKIMRECWYANG  279 (303)
T ss_dssp             SCCHHHHHHHHTTSCC----CCCCCGGG---GSSHHHHHHHHHHHTTCCSSG
T ss_pred             cchHHHHHHHHhcccC----CCCCCccc---cchHHHHHHHHHHHHHcccCH
Confidence            0112222333322222    22222221   233567788999999999998

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=4.4e-55  Score=389.02  Aligned_cols=201  Identities=20%  Similarity=0.169  Sum_probs=171.4

Q ss_pred             hcCCCcCCccccCCCceEEEEEE-----CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcce
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW-----QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~-----~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      .++|++.+.||+|+||+||+|+.     +++.||+|++.+.. .......+.+|+.+|++++|||||++++++.+.+.+|
T Consensus        23 p~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  102 (304)
T 3ubd_A           23 PSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLY  102 (304)
T ss_dssp             GGGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEE
T ss_pred             ccccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEE
Confidence            36799999999999999999987     46789999997542 2222346789999999999999999999999999999


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      +|||||+||+|.+++.+..     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+|+
T Consensus       103 ivmEy~~gg~L~~~l~~~~-----~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~  174 (304)
T 3ubd_A          103 LILDFLRGGDLFTRLSKEV-----MFTEEDVKFYLAELALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSK  174 (304)
T ss_dssp             EEECCCTTCEEHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTSCEEEESSEEEE
T ss_pred             EEEEcCCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHeEEcCCCCEEecccccce
Confidence            9999999999999998764     6999999999999999999999   8999999999999999999999999999998


Q ss_pred             ccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ........  .....||+.|||||++.+..++.++|||||||++|||+||+.||...
T Consensus       175 ~~~~~~~~--~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~  229 (304)
T 3ubd_A          175 ESIDHEKK--AYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGK  229 (304)
T ss_dssp             C-----CC--CCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             eccCCCcc--ccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCc
Confidence            65443222  14567999999999999999999999999999999999999999754

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=4.9e-52  Score=370.35  Aligned_cols=200  Identities=18%  Similarity=0.293  Sum_probs=164.4

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCC--------
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETP--------  140 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~--------  140 (338)
                      ++|++.+.||+|+||+||+|++  +++.||+|++.........+.+.+|+.+|++++|||||++++++.+.+        
T Consensus         5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~   84 (299)
T 4g31_A            5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS   84 (299)
T ss_dssp             HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred             hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence            4688999999999999999998  789999999976655556678999999999999999999999987544        


Q ss_pred             ----cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEE
Q 038823          141 ----IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKL  216 (338)
Q Consensus       141 ----~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl  216 (338)
                          .+|+|||||++|+|.+++.....  ....++..+..++.||+.||.|||   +++|+||||||+|||++.++.+||
T Consensus        85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~--~~~~~~~~~~~i~~qi~~al~ylH---~~~IiHRDlKp~NILl~~~~~vKl  159 (299)
T 4g31_A           85 SPKVYLYIQMQLCRKENLKDWMNGRCT--IEERERSVCLHIFLQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKV  159 (299)
T ss_dssp             --CEEEEEEEECCCSCCHHHHHHTCCS--GGGSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEE
T ss_pred             CCCcEEEEEEecCCCCcHHHHHHhcCC--CChhHHHHHHHHHHHHHHHHHHHH---HCcCccccCcHHHeEECCCCcEEE
Confidence                26899999999999999987643  124567788999999999999999   899999999999999999999999


Q ss_pred             ecCCCCcccCCCCcee----------eeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcC
Q 038823          217 FDFSESISIPEGETHI----------ITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRD  278 (338)
Q Consensus       217 ~Dfg~a~~~~~~~~~~----------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~  278 (338)
                      +|||+|+.........          .....+||+.|||||++.+..|+.++|||||||++|||++   ||.
T Consensus       160 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~  228 (299)
T 4g31_A          160 GDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFS  228 (299)
T ss_dssp             CCCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCS
T ss_pred             ccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCC
Confidence            9999998775432211          1134579999999999999999999999999999999996   775

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=3e-49  Score=365.24  Aligned_cols=202  Identities=15%  Similarity=0.221  Sum_probs=174.4

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeec------CCc
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLE------TPI  141 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~------~~~  141 (338)
                      ++|.+.+.||+|+||+||+|.+  +|+.||||++.... .....+.+.+|+.+|++++|||||++++++..      .+.
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~  133 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS  133 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence            5789999999999999999999  79999999997654 34456778999999999999999999998764      357


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCC
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSE  221 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~  221 (338)
                      +|+|||||+ |+|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+
T Consensus       134 ~~ivmE~~~-g~L~~~i~~~~-----~l~~~~~~~~~~qil~al~ylH---~~~iiHRDlKP~NIl~~~~~~~Ki~DFGl  204 (398)
T 4b99_A          134 VYVVLDLME-SDLHQIIHSSQ-----PLTLEHVRYFLYQLLRGLKYMH---SAQVIHRDLKPSNLLVNENCELKIGDFGM  204 (398)
T ss_dssp             EEEEEECCS-EEHHHHHTSSS-----CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTT
T ss_pred             EEEEEeCCC-CCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCcCcCCCcCccccccCCCCCEEEeecce
Confidence            899999997 78999997754     6999999999999999999999   99999999999999999999999999999


Q ss_pred             CcccCCCCc--eeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          222 SISIPEGET--HIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       222 a~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      |+.......  .......+||+.|+|||++.+. .++.++||||+||++|||+||++||...+
T Consensus       205 a~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~  267 (398)
T 4b99_A          205 ARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKN  267 (398)
T ss_dssp             CBCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSS
T ss_pred             eeecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCC
Confidence            987643321  1122456899999999998775 47999999999999999999999998643

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=4.6e-49  Score=379.93  Aligned_cols=199  Identities=14%  Similarity=0.172  Sum_probs=174.4

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-----CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcce
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-----SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      ++|.+.+.||+|+||.||+|..  +|+.||+|++.+..     ..........++.+++.++|||||++++++.+.+.+|
T Consensus       189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~ly  268 (689)
T 3v5w_A          189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS  268 (689)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred             HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEE
Confidence            6799999999999999999999  89999999996431     1112223334467778889999999999999999999


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      +||||++||+|.++|.+.+     .+++..+..++.||+.||.|||   +.+||||||||+|||++.+|++||+|||+|+
T Consensus       269 lVmEy~~GGdL~~~l~~~~-----~l~E~~a~~y~~qIl~aL~yLH---~~gIiHRDLKPeNILld~~G~vKL~DFGlA~  340 (689)
T 3v5w_A          269 FILDLMNGGDLHYHLSQHG-----VFSEADMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLAC  340 (689)
T ss_dssp             EEECCCCSCBHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             EEEecCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCchHHeEEeCCCCEEecccceee
Confidence            9999999999999998764     6999999999999999999999   9999999999999999999999999999998


Q ss_pred             ccCCCCceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      .......    ...+||+.|||||++.. ..|+.++|||||||++|||+||++||....
T Consensus       341 ~~~~~~~----~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~  395 (689)
T 3v5w_A          341 DFSKKKP----HASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHK  395 (689)
T ss_dssp             ECSSCCC----CSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGG
T ss_pred             ecCCCCC----CCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            7765432    45689999999999975 469999999999999999999999997543

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=2.7e-48  Score=350.80  Aligned_cols=268  Identities=28%  Similarity=0.421  Sum_probs=227.6

Q ss_pred             cCHHHHHHhhcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecC
Q 038823           61 FSAKELEIATNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLET  139 (338)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~  139 (338)
                      +...++...+++|...+.||+|+||.||+|.+ ++..||+|++... .....+.+.+|+.++++++||||+++++++.+.
T Consensus        29 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~  107 (321)
T 2qkw_B           29 VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPE-SSQGIEEFETEIETLSFCRHPHLVSLIGFCDER  107 (321)
T ss_dssp             -CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSC-CSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCT
T ss_pred             ecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEeccc-ChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCC
Confidence            44556677889999999999999999999998 7899999998765 344567899999999999999999999999999


Q ss_pred             CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecC
Q 038823          140 PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDF  219 (338)
Q Consensus       140 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Df  219 (338)
                      +..++||||+++|+|.+++....... ..+++..++.++.|++.||.|||   ..+|+||||||+||+++.++.+||+||
T Consensus       108 ~~~~lv~e~~~~~~L~~~l~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Df  183 (321)
T 2qkw_B          108 NEMILIYKYMENGNLKRHLYGSDLPT-MSMSWEQRLEICIGAARGLHYLH---TRAIIHRDVKSINILLDENFVPKITDF  183 (321)
T ss_dssp             TCCEEEEECCTTCBTGGGSSSSCCCS-CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCSTTEEECTTCCEEECCC
T ss_pred             CeEEEEEEcCCCCcHHHHHhccCCCc-cccCHHHHHHHHHHHHHHHHHhc---CCCeecCCCCHHHEEECCCCCEEEeec
Confidence            99999999999999999997654321 25899999999999999999999   899999999999999999999999999


Q ss_pred             CCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHHHHHHHhc
Q 038823          220 SESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQN  299 (338)
Q Consensus       220 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~~~~~~~~  299 (338)
                      |++................||+.|+|||.+.+..++.++||||||+++|||+||+.||....+ .....+..|.......
T Consensus       184 g~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~-~~~~~~~~~~~~~~~~  262 (321)
T 2qkw_B          184 GISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLP-REMVNLAEWAVESHNN  262 (321)
T ss_dssp             TTCEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSS-SSCCCHHHHTHHHHTT
T ss_pred             ccccccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCc-HHHHHHHHHhhhcccc
Confidence            999875543322222445689999999999888999999999999999999999999986555 4445667777777777


Q ss_pred             CccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          300 NRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       300 ~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                      +.+..++++.+...    ........+.+++.+||+.||
T Consensus       263 ~~~~~~~~~~~~~~----~~~~~~~~l~~li~~~l~~dP  297 (321)
T 2qkw_B          263 GQLEQIVDPNLADK----IRPESLRKFGDTAVKCLALSS  297 (321)
T ss_dssp             TCCCSSSSSSCTTC----SCHHHHHHHHHHHHHHTCSSG
T ss_pred             ccHHHhcChhhccc----cCHHHHHHHHHHHHHHcCCCc
Confidence            77777777766554    456778889999999999988

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=1.5e-48  Score=353.00  Aligned_cols=277  Identities=26%  Similarity=0.421  Sum_probs=231.8

Q ss_pred             CCccccCHHHHHHhhcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeee
Q 038823           56 NPYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIG  134 (338)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~  134 (338)
                      ...+.++..++...+++|+..+.||+|+||.||+|.. +++.||+|++...........+.+|+.++++++||||+++++
T Consensus        15 ~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~   94 (326)
T 3uim_A           15 GQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRG   94 (326)
T ss_dssp             CCCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCE
T ss_pred             CccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEE
Confidence            4467799999999999999999999999999999998 788999999976543333346889999999999999999999


Q ss_pred             eeecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCce
Q 038823          135 CCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVA  214 (338)
Q Consensus       135 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~  214 (338)
                      ++.+.+..++||||+++|+|.+++....... ..+++..+..++.|++.||.|||+.+..+|+||||||+|||++.++.+
T Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~  173 (326)
T 3uim_A           95 FCMTPTERLLVYPYMANGSVASCLRERPESQ-PPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEA  173 (326)
T ss_dssp             EECCSSCCEEEEECCTTCBHHHHHHCCSTTC-CCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCE
T ss_pred             EEecCCceEEEEEeccCCCHHHHHHhccccC-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCE
Confidence            9999999999999999999999998764322 369999999999999999999993222299999999999999999999


Q ss_pred             EEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccC-CcccccHHHHH
Q 038823          215 KLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT-HGSVRHLIEYL  293 (338)
Q Consensus       215 kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~-~~~~~~l~~~~  293 (338)
                      ||+|||++........... ....||+.|+|||.+.+..++.++||||||+++|+|+||+.||+.... ......+..++
T Consensus       174 kl~Dfg~~~~~~~~~~~~~-~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~  252 (326)
T 3uim_A          174 VVGDFGLAKLMDYKDTHVT-TAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWV  252 (326)
T ss_dssp             EECCCSSCEECCSSSSCEE-CCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHH
T ss_pred             EeccCccccccCccccccc-ccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHH
Confidence            9999999987754433322 455699999999999888899999999999999999999999964321 12334567777


Q ss_pred             HHHHhcCccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          294 KNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       294 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                      ........+..+++..+...    ........+.+++.+||+.||
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~li~~cl~~dP  293 (326)
T 3uim_A          253 KGLLKEKKLEALVDVDLQGN----YKDEEVEQLIQVALLCTQSSP  293 (326)
T ss_dssp             TTTTSSCCSTTSSCTTCTTS----CCHHHHHHHHHHHHHHTCSCG
T ss_pred             HHHhhchhhhhhcChhhccc----cCHHHHHHHHHHHHHHhCcCC
Confidence            77777777778887777665    556788899999999999998

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=1.5e-48  Score=376.99  Aligned_cols=201  Identities=14%  Similarity=0.162  Sum_probs=181.4

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      .++|.+.+.||+|+||.||+|..  +|+.||+|++... .....+.+.+|+.+|+.++|||||++++++.+.+.+|+|||
T Consensus       156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~-~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E  234 (573)
T 3uto_A          156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTP-HESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYE  234 (573)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-SHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEecc-chhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEe
Confidence            36799999999999999999999  7899999999765 34455778999999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC--CceEEecCCCCccc
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE--NVAKLFDFSESISI  225 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~--~~~kl~Dfg~a~~~  225 (338)
                      ||+||+|.+++.....    .+++..+..++.||+.||.|||   +.+|+||||||+|||++.+  +.+||+|||+|+..
T Consensus       235 ~~~gg~L~~~i~~~~~----~l~e~~~~~~~~qi~~al~ylH---~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~  307 (573)
T 3uto_A          235 FMSGGELFEKVADEHN----KMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHL  307 (573)
T ss_dssp             CCCCCBHHHHHTCTTS----CEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCSSCEEC
T ss_pred             ecCCCcHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCChhhccccCCCCCCEEEeeccceeEc
Confidence            9999999999976543    6999999999999999999999   9999999999999999854  89999999999987


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ......   ....||+.|+|||++.+..|+.++|||||||++|||++|++||....
T Consensus       308 ~~~~~~---~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~  360 (573)
T 3uto_A          308 DPKQSV---KVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGEN  360 (573)
T ss_dssp             CTTSEE---EEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSS
T ss_pred             cCCCce---eeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC
Confidence            655433   45579999999999999999999999999999999999999998543

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=6.3e-48  Score=352.65  Aligned_cols=200  Identities=15%  Similarity=0.167  Sum_probs=171.4

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE-----CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCc
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW-----QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPI  141 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~-----~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~  141 (338)
                      ...+.|.+.+.||+|+||+||+|+.     +++.||+|.+.....   ...+.+|+++|+.+ +||||+++++++.+.+.
T Consensus        18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~---~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~   94 (361)
T 4f9c_A           18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSH---PIRIAAELQCLTVAGGQDNVMGVKYCFRKNDH   94 (361)
T ss_dssp             GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSC---HHHHHHHHHHHHHTCSBTTBCCCSEEEEETTE
T ss_pred             CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccccC---HHHHHHHHHHHHHhcCCCCCceEEEEEEECCE
Confidence            4567899999999999999999986     367899999876522   25678999999998 69999999999999999


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC-CceEEecCC
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE-NVAKLFDFS  220 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~-~~~kl~Dfg  220 (338)
                      .|+||||+++|+|.+++.        .+++..+..++.|++.||.|||   +.+|+||||||+|||++.+ +.+||+|||
T Consensus        95 ~~lvmE~~~g~~L~~~~~--------~l~~~~~~~~~~qll~al~ylH---~~gIiHRDiKPeNiLl~~~~~~~kl~DFG  163 (361)
T 4f9c_A           95 VVIAMPYLEHESFLDILN--------SLSFQEVREYMLNLFKALKRIH---QFGIVHRDVKPSNFLYNRRLKKYALVDFG  163 (361)
T ss_dssp             EEEEEECCCCCCHHHHHT--------TCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCT
T ss_pred             EEEEEeCCCcccHHHHHc--------CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCcCCHHHeEEeCCCCeEEECcCC
Confidence            999999999999999982        4899999999999999999999   9999999999999999877 799999999


Q ss_pred             CCcccCCCCce--------------------------eeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhC
Q 038823          221 ESISIPEGETH--------------------------IITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTG  273 (338)
Q Consensus       221 ~a~~~~~~~~~--------------------------~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG  273 (338)
                      +|+........                          ......+||+.|+|||++.+. .++.++||||+||++|||+||
T Consensus       164 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G  243 (361)
T 4f9c_A          164 LAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSG  243 (361)
T ss_dssp             TCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHT
T ss_pred             CCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHC
Confidence            99765432110                          011345799999999998775 489999999999999999999


Q ss_pred             CCCcCCcc
Q 038823          274 QSTRDLLR  281 (338)
Q Consensus       274 ~~p~~~~~  281 (338)
                      +.||....
T Consensus       244 ~~Pf~~~~  251 (361)
T 4f9c_A          244 RYPFYKAS  251 (361)
T ss_dssp             CSSSSCCS
T ss_pred             CCCCCCCC
Confidence            99996433

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=2.1e-45  Score=329.60  Aligned_cols=268  Identities=25%  Similarity=0.358  Sum_probs=217.6

Q ss_pred             CccccCHHHHHHhhcCCCcC------CccccCCCceEEEEEECCeEEEEEEeCcCC---CchHHHHHHHHHHHHhccCCc
Q 038823           57 PYRIFSAKELEIATNNYDER------KFIKQDSTYKLYKGFWQERLISVMKYNESY---SDSACKFSINNIVYAAQMDHK  127 (338)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~------~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~---~~~~~~~~~~e~~~l~~l~h~  127 (338)
                      +.+.|++.++..++++|...      +.||+|+||.||+|..+++.||+|++....   .....+.+.+|+.++++++||
T Consensus        11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~   90 (307)
T 2nru_A           11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHE   90 (307)
T ss_dssp             CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEESSSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCT
T ss_pred             CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEECCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCC
Confidence            45779999999999999987      899999999999999999999999997542   234457789999999999999


Q ss_pred             ceeeeeeeeecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCcee
Q 038823          128 HILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCIL  207 (338)
Q Consensus       128 niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nil  207 (338)
                      ||+++++++.+.+..++||||+++++|.+++......  ..+++..++.++.|++.||.|||   +.+|+||||||+||+
T Consensus        91 ~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nil  165 (307)
T 2nru_A           91 NLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGT--PPLSWHMRCKIAQGAANGINFLH---ENHHIHRDIKSANIL  165 (307)
T ss_dssp             TBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGC--CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEE
T ss_pred             CeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCC--CCCCHHHHHHHHHHHHHHHHHHh---cCCeecCCCCHHHEE
Confidence            9999999999999999999999999999999754321  26999999999999999999999   899999999999999


Q ss_pred             eCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccCCcccc
Q 038823          208 FNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVR  287 (338)
Q Consensus       208 l~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~  287 (338)
                      ++.++.+||+|||++................||+.|+|||.+.+ .++.++||||||+++|+|+||+.||..........
T Consensus       166 i~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~  244 (307)
T 2nru_A          166 LDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLL  244 (307)
T ss_dssp             ECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTT
T ss_pred             EcCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcchHHHH
Confidence            99999999999999987665443333345679999999998764 58999999999999999999999998655433222


Q ss_pred             cHHHHHHHHHh-cCccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          288 HLIEYLKNYLQ-NNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       288 ~l~~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                      .+   ...... ...+.+.+++.+..     ........+.+++.+||+.||
T Consensus       245 ~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~li~~cl~~~p  288 (307)
T 2nru_A          245 DI---KEEIEDEEKTIEDYIDKKMND-----ADSTSVEAMYSVASQCLHEKK  288 (307)
T ss_dssp             HH---HHHHHTTSCCHHHHSCSSCSC-----CCHHHHHHHHHHHHHHTCSST
T ss_pred             HH---HHHhhhhhhhhhhhccccccc-----cchHHHHHHHHHHHHHcCCCc
Confidence            22   222221 12233444443322     244567788899999999987

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=1.6e-45  Score=329.22  Aligned_cols=200  Identities=18%  Similarity=0.242  Sum_probs=179.0

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ..++|...+.||+|+||.||+|.+  +++.||+|.+..... ...+.+.+|+.++++++||||+++++++...+..++||
T Consensus        18 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   96 (297)
T 3fxz_A           18 PKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQ-PKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVM   96 (297)
T ss_dssp             GGGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGC-SCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hhhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccc-cHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEE
Confidence            346799999999999999999997  789999999875532 23467889999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++|+|.+++...      .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++....
T Consensus        97 e~~~~~~L~~~~~~~------~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~  167 (297)
T 3fxz_A           97 EYLAGGSLTDVVTET------CMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQIT  167 (297)
T ss_dssp             ECCTTCBHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECC
T ss_pred             ECCCCCCHHHHHhhc------CCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEECCCCCEEEeeCCCceecC
Confidence            999999999999764      5899999999999999999999   8999999999999999999999999999998765


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .....  .....||+.|+|||.+.+..++.++||||||+++|||+||+.||...
T Consensus       168 ~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  219 (297)
T 3fxz_A          168 PEQSK--RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNE  219 (297)
T ss_dssp             STTCC--BCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             Ccccc--cCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            44332  14557999999999999999999999999999999999999999754

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=1.2e-45  Score=331.79  Aligned_cols=214  Identities=25%  Similarity=0.303  Sum_probs=175.5

Q ss_pred             cCHHHHHHhhcCCCcCCccccCCCceEEEEEECCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecC
Q 038823           61 FSAKELEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLET  139 (338)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~  139 (338)
                      +...++....++|++.+.||+|+||.||+|.+++..||+|++.... .....+.+.+|+.++++++||||+++++++.+.
T Consensus        27 ~~~~~~~i~~~~y~i~~~lG~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~  106 (309)
T 3p86_A           27 MDGDDMDIPWCDLNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQP  106 (309)
T ss_dssp             -----CBCCGGGEEEEEEEEECSSEEEEEEEETTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECST
T ss_pred             CCcccccCChhHceeeeEeecCCCeEEEEEEECCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEEC
Confidence            4445566677889999999999999999999999999999997654 344567889999999999999999999999999


Q ss_pred             CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--eeecCCCCCceeeCCCCceEEe
Q 038823          140 PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRP--IVFGNLISLCILFNEENVAKLF  217 (338)
Q Consensus       140 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--iiH~dik~~Nill~~~~~~kl~  217 (338)
                      +..++||||+++|+|.+++......  ..+++..++.++.|++.||.|||   +.+  |+||||||+||+++.++.+||+
T Consensus       107 ~~~~lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~i~~qi~~aL~~LH---~~~~~ivH~Dikp~NIll~~~~~~kL~  181 (309)
T 3p86_A          107 PNLSIVTEYLSRGSLYRLLHKSGAR--EQLDERRRLSMAYDVAKGMNYLH---NRNPPIVHRNLKSPNLLVDKKYTVKVC  181 (309)
T ss_dssp             TCCEEEEECCTTCBHHHHHHSTTHH--HHSCHHHHHHHHHHHHHHHHHHH---TSSSCCCCTTCCGGGEEECTTCCEEEC
T ss_pred             CceEEEEecCCCCcHHHHHhhcCCC--CCCCHHHHHHHHHHHHHHHHHHH---cCCCCEECCCCChhhEEEeCCCcEEEC
Confidence            9999999999999999999875421  13899999999999999999999   888  9999999999999999999999


Q ss_pred             cCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          218 DFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       218 Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      |||+++........  .....||+.|+|||.+.+..++.++||||||+++|+|+||+.||....
T Consensus       182 Dfg~a~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~  243 (309)
T 3p86_A          182 DFGLSRLKASTFLS--SKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLN  243 (309)
T ss_dssp             CCC-------------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSC
T ss_pred             CCCCCccccccccc--cccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            99999765433211  245579999999999999999999999999999999999999997543

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=2.2e-45  Score=332.69  Aligned_cols=202  Identities=20%  Similarity=0.249  Sum_probs=180.9

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      ...++|.+.+.||+|+||.||+|.+  +++.||+|++.... .....+.+.+|+.+++.++||||+++++++.+.+..++
T Consensus        12 ~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~l   91 (328)
T 3fe3_A           12 PHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYL   91 (328)
T ss_dssp             CEETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             CccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEE
Confidence            3456799999999999999999998  88999999997543 44556778999999999999999999999999999999


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ||||+++|+|.+++...+     .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++..
T Consensus        92 v~e~~~~~~L~~~l~~~~-----~l~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~  163 (328)
T 3fe3_A           92 IMEYASGGEVFDYLVAHG-----RMKEKEARSKFRQIVSAVQYCH---QKRIVHRDLKAENLLLDADMNIKIADFGFSNE  163 (328)
T ss_dssp             EECCCTTCBHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSTTCCGG
T ss_pred             EEECCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCCHHHEEEcCCCCEEEeeccCcee
Confidence            999999999999997754     5999999999999999999999   89999999999999999999999999999987


Q ss_pred             cCCCCceeeeecccccCCcccccccccCCCC-ccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          225 IPEGETHIITRSRFGAWTYSAPEYKRGGVFN-EKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       225 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .......   ....||+.|+|||.+.+..++ .++|||||||++|+|+||+.||...
T Consensus       164 ~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  217 (328)
T 3fe3_A          164 FTVGGKL---DAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQ  217 (328)
T ss_dssp             GSSSCGG---GTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cCCCCcc---ccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCC
Confidence            6554322   456799999999999888765 8999999999999999999999754

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=2e-45  Score=332.33  Aligned_cols=205  Identities=20%  Similarity=0.223  Sum_probs=176.3

Q ss_pred             HHhhcCCCcCCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCc----c
Q 038823           67 EIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPI----P  142 (338)
Q Consensus        67 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~----~  142 (338)
                      ....++|.+.+.||+|+||.||+|.+.++.||+|++...  ......+.+|+.++++++||||+++++++.+...    +
T Consensus        20 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~   97 (322)
T 3soc_A           20 YFQSMPLQLLEVKARGRFGCVWKAQLLNEYVAVKIFPIQ--DKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDL   97 (322)
T ss_dssp             EETTEEEEEEEEEECSTTCEEEEEEETTEEEEEEEECGG--GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEE
T ss_pred             ccchhhchhhheecccCceEEEEEEECCCEEEEEEeecC--chHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceE
Confidence            345578999999999999999999999999999999654  2333456679999999999999999999987543    6


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC----------CeeecCCCCCceeeCCCC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPR----------PIVFGNLISLCILFNEEN  212 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~----------~iiH~dik~~Nill~~~~  212 (338)
                      ++||||+++|+|.+++...      .+++..+..++.|++.||.|||   +.          +|+||||||+|||++.++
T Consensus        98 ~lv~e~~~~g~L~~~l~~~------~~~~~~~~~i~~qi~~al~~LH---~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~  168 (322)
T 3soc_A           98 WLITAFHEKGSLSDFLKAN------VVSWNELCHIAETMARGLAYLH---EDIPGLKDGHKPAISHRDIKSKNVLLKNNL  168 (322)
T ss_dssp             EEEEECCTTCBHHHHHHHC------CBCHHHHHHHHHHHHHHHHHHT---CCEEEETTEEECEEECSCCSGGGEEECTTC
T ss_pred             EEEEecCCCCCHHHHHHhc------CCCHHHHHHHHHHHHHHHHHHH---hhccccccccCCCEEeCCCChHhEEECCCC
Confidence            9999999999999999764      5899999999999999999999   88          999999999999999999


Q ss_pred             ceEEecCCCCcccCCCCceeeeecccccCCcccccccccC-----CCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          213 VAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGG-----VFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       213 ~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      .+||+|||+++...............||+.|+|||.+.+.     .++.++|||||||++|||+||+.||.....
T Consensus       169 ~~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~  243 (322)
T 3soc_A          169 TACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVD  243 (322)
T ss_dssp             CEEECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCC
T ss_pred             eEEEccCCcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcc
Confidence            9999999999877654433333456799999999998763     456789999999999999999999976443

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=1.7e-45  Score=338.95  Aligned_cols=210  Identities=19%  Similarity=0.265  Sum_probs=181.5

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE---------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeeeec
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW---------QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCCLE  138 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~---------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~  138 (338)
                      ..++|.+.+.||+|+||.||+|.+         ++..||+|.+.........+.+.+|+.+++++ +||||+++++++.+
T Consensus        79 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~  158 (370)
T 2psq_A           79 PRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ  158 (370)
T ss_dssp             CGGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECS
T ss_pred             cHHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEcc
Confidence            346788889999999999999986         23569999998765566678899999999999 89999999999999


Q ss_pred             CCcceEEEeecCCCCHHHhhhcCCCC-----------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCcee
Q 038823          139 TPIPILVFEYGEYTTLRDRIFGAPQP-----------HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCIL  207 (338)
Q Consensus       139 ~~~~~lv~e~~~~gsL~~~l~~~~~~-----------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nil  207 (338)
                      .+..++||||+++|+|.+++......           ....+++..++.++.||+.||.|||   +.+|+||||||+|||
T Consensus       159 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIl  235 (370)
T 2psq_A          159 DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVL  235 (370)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEE
T ss_pred             CCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeccccchhhEE
Confidence            99999999999999999999865321           1125899999999999999999999   899999999999999


Q ss_pred             eCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          208 FNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       208 l~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      ++.++.+||+|||+++...............+|+.|+|||++.+..++.++|||||||++|||+| |+.||....
T Consensus       236 l~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~  310 (370)
T 2psq_A          236 VTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP  310 (370)
T ss_dssp             ECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred             ECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCC
Confidence            99999999999999987655433222244557889999999999999999999999999999999 999998643

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=2.8e-45  Score=333.08  Aligned_cols=201  Identities=15%  Similarity=0.168  Sum_probs=178.3

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      .++|.+.+.||+|+||.||+|..  +++.||+|.+.+..  .......+.+|+.+++.++||||+++++++.+.+..++|
T Consensus         4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv   83 (337)
T 1o6l_A            4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV   83 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEE
Confidence            36788999999999999999998  78999999997542  223356788999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||+++|+|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+++..
T Consensus        84 ~E~~~gg~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~  155 (337)
T 1o6l_A           84 MEYANGGELFFHLSRER-----VFTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEG  155 (337)
T ss_dssp             EECCTTCBHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCS
T ss_pred             EeCCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCCHHHEEECCCCCEEEeeccchhhc
Confidence            99999999999997654     5899999999999999999999   899999999999999999999999999999864


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ......  .....||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus       156 ~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~  208 (337)
T 1o6l_A          156 ISDGAT--MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ  208 (337)
T ss_dssp             CCTTCC--BCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccCCCc--ccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCC
Confidence            332221  14567999999999999989999999999999999999999999753

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=1.1e-44  Score=327.35  Aligned_cols=210  Identities=18%  Similarity=0.230  Sum_probs=184.6

Q ss_pred             cccCHHHHHHhhcC----------CCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCC
Q 038823           59 RIFSAKELEIATNN----------YDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDH  126 (338)
Q Consensus        59 ~~~~~~~~~~~~~~----------~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h  126 (338)
                      ..++.+++..+++.          |+..+.||+|+||.||+|..  +|+.||+|++.... ....+.+.+|+.++++++|
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h  101 (321)
T 2c30_A           23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRK-QQRRELLFNEVVIMRDYQH  101 (321)
T ss_dssp             --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTT-CCSHHHHHHHHHHHTTCCC
T ss_pred             CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccc-hhHHHHHHHHHHHHHhCCC
Confidence            45788888888765          56667899999999999998  78999999997653 3344678899999999999


Q ss_pred             cceeeeeeeeecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCce
Q 038823          127 KHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCI  206 (338)
Q Consensus       127 ~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Ni  206 (338)
                      |||+++++++...+..++||||+++++|.+++...      .+++..+..++.|++.||.|||   +.+|+||||||+||
T Consensus       102 ~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~------~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NI  172 (321)
T 2c30_A          102 FNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQV------RLNEEQIATVCEAVLQALAYLH---AQGVIHRDIKSDSI  172 (321)
T ss_dssp             TTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTTC------CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGE
T ss_pred             CCcceEEEEEEECCEEEEEEecCCCCCHHHHHHhc------CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHE
Confidence            99999999999999999999999999999998653      5899999999999999999999   89999999999999


Q ss_pred             eeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          207 LFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       207 ll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      +++.++.+||+|||++.........  .....||+.|+|||.+.+..++.++||||||+++|||+||+.||...
T Consensus       173 ll~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~  244 (321)
T 2c30_A          173 LLTLDGRVKLSDFGFCAQISKDVPK--RKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSD  244 (321)
T ss_dssp             EECTTCCEEECCCTTCEECCSSSCC--BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             EECCCCcEEEeeeeeeeecccCccc--cccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            9999999999999999876543221  14557999999999999989999999999999999999999999753

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=3.9e-45  Score=328.41  Aligned_cols=251  Identities=18%  Similarity=0.200  Sum_probs=202.0

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      .++|...+.||+|+||.||+|.+  ++..||+|.+... .....+.+.+|+.++++++||||+++++++.+++..++|||
T Consensus         9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   87 (310)
T 3s95_A            9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRF-DEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITE   87 (310)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccC-CHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEE
Confidence            35688899999999999999999  6889999998654 55566889999999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |+++|+|.+++.....    .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++.....
T Consensus        88 ~~~~~~L~~~l~~~~~----~~~~~~~~~i~~qi~~al~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  160 (310)
T 3s95_A           88 YIKGGTLRGIIKSMDS----QYPWSQRVSFAKDIASGMAYLH---SMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVD  160 (310)
T ss_dssp             CCTTCBHHHHHHHCCT----TSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEECTTSCEEECCCTTCEECC-
T ss_pred             ecCCCcHHHHHHhccC----CCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCcCeEEECCCCCEEEeecccceeccc
Confidence            9999999999987543    6999999999999999999999   89999999999999999999999999999987654


Q ss_pred             CCceee------------eecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccCCcc--cccHHHHH
Q 038823          228 GETHII------------TRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGS--VRHLIEYL  293 (338)
Q Consensus       228 ~~~~~~------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~--~~~l~~~~  293 (338)
                      ......            .....||+.|+|||.+.+..++.++||||||+++|||++|..||........  ........
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~  240 (310)
T 3s95_A          161 EKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFL  240 (310)
T ss_dssp             -------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHH
T ss_pred             ccccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhccc
Confidence            332110            0145699999999999999999999999999999999999999875433221  11222222


Q ss_pred             HHHHh---cCccccccccccccCcCCcccHHHHHHHHH
Q 038823          294 KNYLQ---NNRFTEIADPIIVQDLSCTETEHQFQACAR  328 (338)
Q Consensus       294 ~~~~~---~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~  328 (338)
                      .....   ...+.+++..++..+|..|++..++.+.++
T Consensus       241 ~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~  278 (310)
T 3s95_A          241 DRYCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLE  278 (310)
T ss_dssp             HHTCCTTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence            22111   134566777777777777777666555443

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=1.3e-46  Score=347.32  Aligned_cols=211  Identities=20%  Similarity=0.246  Sum_probs=184.3

Q ss_pred             HHHHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCc
Q 038823           64 KELEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPI  141 (338)
Q Consensus        64 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~  141 (338)
                      ..|....++|.+.+.||+|+||.||+|.+  ++..||+|.+.........+.+.+|+.++++++||||+++++++.+.+.
T Consensus       107 ~~~~~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~  186 (377)
T 3cbl_A          107 DKWVLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQP  186 (377)
T ss_dssp             CTTBCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred             cccEEchHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCC
Confidence            45566678899999999999999999999  6889999999866555555678999999999999999999999999999


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCC
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSE  221 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~  221 (338)
                      .++||||+++|+|.+++...+.    .+++..++.++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||+
T Consensus       187 ~~lv~e~~~~g~L~~~l~~~~~----~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nil~~~~~~~kl~DfG~  259 (377)
T 3cbl_A          187 IYIVMELVQGGDFLTFLRTEGA----RLRVKTLLQMVGDAAAGMEYLE---SKCCIHRDLAARNCLVTEKNVLKISDFGM  259 (377)
T ss_dssp             CEEEEECCTTCBHHHHHHHHGG----GCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGG
T ss_pred             cEEEEEcCCCCCHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHH---HCCcCCcccCHHHEEEcCCCcEEECcCCC
Confidence            9999999999999999976543    6899999999999999999999   89999999999999999999999999999


Q ss_pred             CcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          222 SISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       222 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      ++...............++..|+|||.+..+.++.++|||||||++|||+| |..||....
T Consensus       260 s~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~  320 (377)
T 3cbl_A          260 SREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLS  320 (377)
T ss_dssp             CEECTTSEEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSC
T ss_pred             ceecCCCceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence            987554322221123346778999999998889999999999999999999 999998643

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=4.8e-45  Score=325.62  Aligned_cols=202  Identities=21%  Similarity=0.263  Sum_probs=174.5

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      .++|.+.+.||+|+||.||+|.+  ++..||+|.+....  .....+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv   89 (294)
T 4eqm_A           10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV   89 (294)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred             hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence            46799999999999999999998  78899999985432  344567889999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||+++++|.+++....     ++++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++...
T Consensus        90 ~e~~~g~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~  161 (294)
T 4eqm_A           90 MEYIEGPTLSEYIESHG-----PLSVDTAINFTNQILDGIKHAH---DMRIVHRDIKPQNILIDSNKTLKIFDFGIAKAL  161 (294)
T ss_dssp             EECCCSCBHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC
T ss_pred             EeCCCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEEeCCCcccc
Confidence            99999999999997654     6999999999999999999999   899999999999999999999999999999876


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ...... ......||+.|+|||.+.+..++.++||||||+++|+|+||+.||...
T Consensus       162 ~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~  215 (294)
T 4eqm_A          162 SETSLT-QTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGE  215 (294)
T ss_dssp             --------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSS
T ss_pred             cccccc-ccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence            543222 124456999999999999999999999999999999999999999754

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.7e-44  Score=325.70  Aligned_cols=261  Identities=15%  Similarity=0.194  Sum_probs=201.2

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCC--cceEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETP--IPILV  145 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~--~~~lv  145 (338)
                      .++|.+.+.||+|+||.||+|.+  +++.||+|++.........+.+.+|+.++++++||||+++++++...+  ..++|
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv   87 (319)
T 4euu_A            8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI   87 (319)
T ss_dssp             SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred             CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEE
Confidence            35688899999999999999999  689999999986544444577889999999999999999999988655  67999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceee----CCCCceEEecCCC
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILF----NEENVAKLFDFSE  221 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill----~~~~~~kl~Dfg~  221 (338)
                      |||+++++|.+++......  ..+++..++.++.|++.||.|||   +.+|+||||||+||++    +.++.+||+|||+
T Consensus        88 ~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~  162 (319)
T 4euu_A           88 MEFCPCGSLYTVLEEPSNA--YGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGA  162 (319)
T ss_dssp             EECCTTCBHHHHHHSGGGT--TCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEECTTSCEEEEECCCTT
T ss_pred             EeCCCCCCHHHHHHHhccc--cCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEEeccCCCCceEEEccCCC
Confidence            9999999999999875431  14999999999999999999999   8999999999999999    7888899999999


Q ss_pred             CcccCCCCceeeeecccccCCcccccccc--------cCCCCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHHH
Q 038823          222 SISIPEGETHIITRSRFGAWTYSAPEYKR--------GGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYL  293 (338)
Q Consensus       222 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~~  293 (338)
                      ++........   ....||..|+|||.+.        +..++.++|||||||++|||+||+.||...........+...+
T Consensus       163 a~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~  239 (319)
T 4euu_A          163 ARELEDDEQF---VSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKI  239 (319)
T ss_dssp             CEECCTTCCB---CCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHH
T ss_pred             ceecCCCCce---eecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHH
Confidence            9877654332   3456899999999886        4678999999999999999999999997654433333333222


Q ss_pred             HHHHhcCcccccc---cccc----ccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          294 KNYLQNNRFTEIA---DPII----VQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       294 ~~~~~~~~~~~~~---d~~l----~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                      ....+...+..+.   ...+    .-.............+..++.+||+.||
T Consensus       240 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP  291 (319)
T 4euu_A          240 ITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQ  291 (319)
T ss_dssp             HHHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCT
T ss_pred             hcCCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCCh
Confidence            2222111111110   0000    0001112334566778899999999998

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=3e-45  Score=331.58  Aligned_cols=205  Identities=19%  Similarity=0.260  Sum_probs=177.5

Q ss_pred             hcCCCcCCccccCCCceEEEEEE-----CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW-----QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~-----~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      .++|.+.+.||+|+||.||+|.+     .+..||+|.+.........+.+.+|+.++++++||||+++++++.+.+..++
T Consensus        48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  127 (325)
T 3kul_A           48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMI  127 (325)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEE
T ss_pred             hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEE
Confidence            45678889999999999999998     3446999999877666667889999999999999999999999999999999


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ||||+++|+|.+++.....    .+++..++.++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++..
T Consensus       128 v~e~~~~~~L~~~l~~~~~----~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~  200 (325)
T 3kul_A          128 VTEYMENGSLDTFLRTHDG----QFTIMQLVGMLRGVGAGMRYLS---DLGYVHRDLAARNVLVDSNLVCKVSDFGLSRV  200 (325)
T ss_dssp             EEECCTTCBHHHHHHTTTT----CSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCSSCEE
T ss_pred             EeeCCCCCcHHHHHHhccc----CCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEECCCCCEEECCCCcccc
Confidence            9999999999999976543    6999999999999999999999   89999999999999999999999999999987


Q ss_pred             cCCCCce-eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          225 IPEGETH-IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       225 ~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      ....... .......+|+.|+|||.+.+..++.++||||||+++|||++ |+.||....
T Consensus       201 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~  259 (325)
T 3kul_A          201 LEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMT  259 (325)
T ss_dssp             CC----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSC
T ss_pred             cccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCC
Confidence            7554322 12233456788999999998889999999999999999999 999997543

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=7.7e-46  Score=347.34  Aligned_cols=212  Identities=15%  Similarity=0.131  Sum_probs=184.2

Q ss_pred             CHHHHHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeee
Q 038823           62 SAKELEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCL  137 (338)
Q Consensus        62 ~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~  137 (338)
                      ...++....++|.+.+.||+|+||.||+|..  +++.||+|++.+..  .......+.+|..++..++||||+++++++.
T Consensus        65 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~  144 (437)
T 4aw2_A           65 KVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQ  144 (437)
T ss_dssp             HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred             hhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe
Confidence            4556677788999999999999999999999  68899999996531  1112234788999999999999999999999


Q ss_pred             cCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEe
Q 038823          138 ETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLF  217 (338)
Q Consensus       138 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~  217 (338)
                      +.+..++||||+++|+|.+++.....    .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+
T Consensus       145 ~~~~~~lV~Ey~~gg~L~~~l~~~~~----~l~e~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILl~~~g~vkL~  217 (437)
T 4aw2_A          145 DDNNLYLVMDYYVGGDLLTLLSKFED----RLPEEMARFYLAEMVIAIDSVH---QLHYVHRDIKPDNILMDMNGHIRLA  217 (437)
T ss_dssp             CSSEEEEEECCCTTCBHHHHHHTTTT----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEEC
T ss_pred             eCCEEEEEEecCCCCcHHHHHHHccC----CCCHHHHHHHHHHHHHHHHHHH---hCCeEecccCHHHeeEcCCCCEEEc
Confidence            99999999999999999999987443    6999999999999999999999   8999999999999999999999999


Q ss_pred             cCCCCcccCCCCceeeeecccccCCcccccccc-----cCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          218 DFSESISIPEGETHIITRSRFGAWTYSAPEYKR-----GGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       218 Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      |||+++......... .....||+.|+|||++.     ...++.++|||||||++|||+||+.||....
T Consensus       218 DFGla~~~~~~~~~~-~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~  285 (437)
T 4aw2_A          218 DFGSCLKLMEDGTVQ-SSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAES  285 (437)
T ss_dssp             CCTTCEECCTTSCEE-CCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred             chhhhhhcccCCCcc-cccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCC
Confidence            999998765543332 24567999999999987     4568999999999999999999999998543

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=5.6e-45  Score=337.30  Aligned_cols=202  Identities=21%  Similarity=0.277  Sum_probs=177.1

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcce
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~  143 (338)
                      ..++|.+.+.||+|+||.||+|..  +++.||+|++.+..  .....+.+.+|..++.++ +||||+++++++.+.+..+
T Consensus        50 ~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~  129 (396)
T 4dc2_A           50 GLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLF  129 (396)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEE
T ss_pred             ChhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEE
Confidence            346799999999999999999999  78899999997543  223345678899999887 7999999999999999999


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      +||||+++|+|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+++
T Consensus       130 lV~E~~~gg~L~~~l~~~~-----~l~~~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~DFGla~  201 (396)
T 4dc2_A          130 FVIEYVNGGDLMFHMQRQR-----KLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCK  201 (396)
T ss_dssp             EEEECCTTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCB
T ss_pred             EEEEcCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEECCCCCEEEeecceee
Confidence            9999999999999998754     5999999999999999999999   8999999999999999999999999999998


Q ss_pred             ccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ........  .....||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus       202 ~~~~~~~~--~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~  256 (396)
T 4dc2_A          202 EGLRPGDT--TSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIV  256 (396)
T ss_dssp             CCCCTTCC--BCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTT
T ss_pred             ecccCCCc--cccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccc
Confidence            64332221  25567999999999999999999999999999999999999999754

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=1.2e-45  Score=338.21  Aligned_cols=219  Identities=18%  Similarity=0.287  Sum_probs=189.4

Q ss_pred             ccCHHHHHHhhcCCCcCCccccCCCceEEEEEE-------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceee
Q 038823           60 IFSAKELEIATNNYDERKFIKQDSTYKLYKGFW-------QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILK  131 (338)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~  131 (338)
                      .+...+++...++|.+.+.||+|+||.||+|.+       +++.||+|++.........+.+.+|+.++.++ +||||++
T Consensus        11 ~~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~   90 (359)
T 3vhe_A           11 PYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVN   90 (359)
T ss_dssp             CCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred             CCCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceee
Confidence            367788889999999999999999999999984       45789999998766666667899999999999 7999999


Q ss_pred             eeeeeecCC-cceEEEeecCCCCHHHhhhcCCCCC---------------------------------------------
Q 038823          132 LIGCCLETP-IPILVFEYGEYTTLRDRIFGAPQPH---------------------------------------------  165 (338)
Q Consensus       132 l~~~~~~~~-~~~lv~e~~~~gsL~~~l~~~~~~~---------------------------------------------  165 (338)
                      +++++.+.+ ..++||||+++|+|.+++.......                                             
T Consensus        91 ~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (359)
T 3vhe_A           91 LLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEE  170 (359)
T ss_dssp             EEEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC-----------------------------------------
T ss_pred             eeeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccc
Confidence            999998755 4899999999999999998754210                                             


Q ss_pred             ----------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCC
Q 038823          166 ----------------FEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGE  229 (338)
Q Consensus       166 ----------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~  229 (338)
                                      ...+++..++.++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++.......
T Consensus       171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~  247 (359)
T 3vhe_A          171 KSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDP  247 (359)
T ss_dssp             -------------CTTTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCT
T ss_pred             cccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEEcCCCcEEEEeccceeeecccc
Confidence                            112899999999999999999999   8999999999999999999999999999998765544


Q ss_pred             ceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          230 THIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       230 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      .........||+.|+|||++.+..++.++||||||+++|||+| |+.||....
T Consensus       248 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~  300 (359)
T 3vhe_A          248 DYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK  300 (359)
T ss_dssp             TCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred             cchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccc
Confidence            4333356678999999999999999999999999999999999 999997644

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=2.2e-44  Score=330.01  Aligned_cols=201  Identities=18%  Similarity=0.142  Sum_probs=179.4

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCc-----hHHHHHHHHHHHHhccCCcceeeeeeeeecCCc
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSD-----SACKFSINNIVYAAQMDHKHILKLIGCCLETPI  141 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~-----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~  141 (338)
                      ..+.|.+.+.||+|+||.||+|..  ++..||+|.+......     ...+.+.+|+.+|++++||||+++++++.+.+.
T Consensus        10 ~~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~   89 (361)
T 2yab_A           10 VEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTD   89 (361)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE
T ss_pred             hhhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCE
Confidence            456799999999999999999999  7899999999765321     134678999999999999999999999999999


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC----ceEEe
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN----VAKLF  217 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~----~~kl~  217 (338)
                      .++||||+++|+|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++    .+||+
T Consensus        90 ~~lv~e~~~gg~L~~~l~~~~-----~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~~~vkl~  161 (361)
T 2yab_A           90 VVLILELVSGGELFDFLAQKE-----SLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLI  161 (361)
T ss_dssp             EEEEEECCCSCBHHHHHTTCS-----CCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEEC
T ss_pred             EEEEEEcCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEeCCCCCccCEEEE
Confidence            999999999999999997653     6999999999999999999999   89999999999999998877    79999


Q ss_pred             cCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          218 DFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       218 Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      |||++.........   ....||+.|+|||++.+..++.++|||||||++|+|++|..||...
T Consensus       162 DFG~a~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~  221 (361)
T 2yab_A          162 DFGLAHEIEDGVEF---KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD  221 (361)
T ss_dssp             CCSSCEECCTTCCC---CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             ecCCceEcCCCCcc---ccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence            99999877554322   4556999999999999889999999999999999999999999754

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=6.8e-45  Score=328.92  Aligned_cols=205  Identities=19%  Similarity=0.232  Sum_probs=177.0

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      .++|.+.+.||+|+||.||+|.+  +++.||+|++.........+.+.+|+.+++.++||||+++++++.+++..++|||
T Consensus         6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e   85 (323)
T 3tki_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   85 (323)
T ss_dssp             TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEE
Confidence            46789999999999999999998  7889999998755444444678899999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |+++|+|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++.....
T Consensus        86 ~~~~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  157 (323)
T 3tki_A           86 YCSGGELFDRIEPDI-----GMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRY  157 (323)
T ss_dssp             CCTTEEGGGGSBTTT-----BCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEE
T ss_pred             cCCCCcHHHHHhhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCccccccchHHEEEeCCCCEEEEEeeccceecc
Confidence            999999999997654     5999999999999999999999   89999999999999999999999999999987654


Q ss_pred             CCceeeeecccccCCcccccccccCCC-CccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGVF-NEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ...........||+.|+|||.+.+..+ +.++|||||||++|+|+||+.||.....
T Consensus       158 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~  213 (323)
T 3tki_A          158 NNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSD  213 (323)
T ss_dssp             TTEECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCT
T ss_pred             CCcccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCch
Confidence            333322345679999999999987765 7899999999999999999999976443

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=6.5e-45  Score=335.72  Aligned_cols=202  Identities=15%  Similarity=0.180  Sum_probs=178.6

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      -++|.+.+.||+|+||.||+|..  ++..||+|.+....  .....+.+.+|+.+|+.++||||+++++++.+.+..++|
T Consensus        14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv   93 (384)
T 4fr4_A           14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMV   93 (384)
T ss_dssp             GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence            36788999999999999999998  78899999986532  223356788999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||+.+|+|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||++...
T Consensus        94 ~e~~~gg~L~~~l~~~~-----~l~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~  165 (384)
T 4fr4_A           94 VDLLLGGDLRYHLQQNV-----HFKEETVKLFICELVMALDYLQ---NQRIIHRDMKPDNILLDEHGHVHITDFNIAAML  165 (384)
T ss_dssp             ECCCTTEEHHHHHHTTC-----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             EecCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCceeccCcHHHeEECCCCCEEEeccceeeec
Confidence            99999999999998754     5999999999999999999999   899999999999999999999999999999876


Q ss_pred             CCCCceeeeecccccCCccccccccc---CCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRG---GVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ......   ....||+.|+|||++..   ..++.++|||||||++|||+||+.||.....
T Consensus       166 ~~~~~~---~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~  222 (384)
T 4fr4_A          166 PRETQI---TTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSS  222 (384)
T ss_dssp             CTTCCB---CCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTT
T ss_pred             cCCCce---eccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCC
Confidence            544322   45679999999999864   4589999999999999999999999975433

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=1.7e-44  Score=325.44  Aligned_cols=198  Identities=17%  Similarity=0.218  Sum_probs=178.0

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      .++|.+.+.||+|+||.||+|..  +++.||+|.+.+..  .....+.+.+|..+++.++||||+++++++.+.+..++|
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv   84 (318)
T 1fot_A            5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI   84 (318)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred             hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence            35788999999999999999999  78999999997542  122346788999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||+++|+|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||++...
T Consensus        85 ~e~~~gg~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~  156 (318)
T 1fot_A           85 MDYIEGGELFSLLRKSQ-----RFPNPVAKFYAAEVCLALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYV  156 (318)
T ss_dssp             ECCCCSCBHHHHHHHTS-----SCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTSCEEECCCSSCEEC
T ss_pred             EeCCCCCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChheEEEcCCCCEEEeecCcceec
Confidence            99999999999998754     5999999999999999999999   999999999999999999999999999999876


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ....     ....||+.|+|||.+.+..++.++|||||||++|||++|+.||...
T Consensus       157 ~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  206 (318)
T 1fot_A          157 PDVT-----YTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDS  206 (318)
T ss_dssp             SSCB-----CCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             CCcc-----ccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCC
Confidence            5432     4457999999999999989999999999999999999999999753

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.7e-44  Score=324.68  Aligned_cols=199  Identities=17%  Similarity=0.196  Sum_probs=178.8

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      .++|.+.+.||+|+||.||+|..  ++..+|+|.+...  ......+.+|+.+++.++||||+++++++.+.+..++|||
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~--~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e   81 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK--GTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFE   81 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC--THHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecC--cccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEE
Confidence            46789999999999999999999  7899999998754  3344678899999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC--CCceEEecCCCCccc
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE--ENVAKLFDFSESISI  225 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~--~~~~kl~Dfg~a~~~  225 (338)
                      |+++|+|.+++.....    .+++..+..++.|++.||.|||   +.+|+||||||+|||++.  ++.+||+|||++...
T Consensus        82 ~~~g~~L~~~l~~~~~----~~~~~~~~~i~~qi~~al~~lH---~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~  154 (321)
T 1tki_A           82 FISGLDIFERINTSAF----ELNEREIVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQL  154 (321)
T ss_dssp             CCCCCBHHHHHTSSSC----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCTTCEEC
T ss_pred             eCCCCCHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeEC
Confidence            9999999999976543    6999999999999999999999   899999999999999987  789999999999887


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ......   ....||+.|+|||.+.+..++.++||||||+++|+|++|+.||...
T Consensus       155 ~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~  206 (321)
T 1tki_A          155 KPGDNF---RLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAE  206 (321)
T ss_dssp             CTTCEE---EEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             CCCCcc---ccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCC
Confidence            654432   4456899999999998888999999999999999999999999754

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.1e-45  Score=342.04  Aligned_cols=213  Identities=15%  Similarity=0.114  Sum_probs=184.7

Q ss_pred             cCHHHHHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeee
Q 038823           61 FSAKELEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCC  136 (338)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~  136 (338)
                      +..+++....++|.+.+.||+|+||.||+|..  +++.||+|++.+..  .....+.+.+|..++..++||||+++++++
T Consensus        51 ~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~  130 (412)
T 2vd5_A           51 VRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAF  130 (412)
T ss_dssp             HHHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEE
T ss_pred             hhhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEE
Confidence            34556667788999999999999999999999  78999999996531  112234578999999999999999999999


Q ss_pred             ecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEE
Q 038823          137 LETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKL  216 (338)
Q Consensus       137 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl  216 (338)
                      .+.+..|+||||+++|+|.+++.+.+.    .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||
T Consensus       131 ~~~~~~~lVmE~~~gg~L~~~l~~~~~----~l~~~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILld~~g~vkL  203 (412)
T 2vd5_A          131 QDENYLYLVMEYYVGGDLLTLLSKFGE----RIPAEMARFYLAEIVMAIDSVH---RLGYVHRDIKPDNILLDRCGHIRL  203 (412)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHHHHHSS----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEE
T ss_pred             eeCCEEEEEEcCCCCCcHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHH---HCCeeecccCHHHeeecCCCCEEE
Confidence            999999999999999999999986542    6999999999999999999999   899999999999999999999999


Q ss_pred             ecCCCCcccCCCCceeeeecccccCCcccccccc-------cCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          217 FDFSESISIPEGETHIITRSRFGAWTYSAPEYKR-------GGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       217 ~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      +|||+++......... .....||+.|+|||++.       ...++.++|||||||++|||+||+.||....
T Consensus       204 ~DFGla~~~~~~~~~~-~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~  274 (412)
T 2vd5_A          204 ADFGSCLKLRADGTVR-SLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADS  274 (412)
T ss_dssp             CCCTTCEECCTTSCEE-CSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred             eechhheeccCCCccc-cceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCC
Confidence            9999998775543321 24567999999999987       3568999999999999999999999997643

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=1.7e-44  Score=329.06  Aligned_cols=201  Identities=21%  Similarity=0.278  Sum_probs=178.4

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcceE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~l  144 (338)
                      .++|.+.+.||+|+||.||+|..  +++.||+|++.+..  .....+.+.+|..++.++ +||||+++++++.+.+..++
T Consensus         8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l   87 (345)
T 3a8x_A            8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF   87 (345)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEE
Confidence            35688899999999999999999  68999999997543  334556788999999988 89999999999999999999


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ||||+++|+|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+++.
T Consensus        88 v~e~~~gg~L~~~l~~~~-----~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~  159 (345)
T 3a8x_A           88 VIEYVNGGDLMFHMQRQR-----KLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKE  159 (345)
T ss_dssp             EECCCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCGGGCBC
T ss_pred             EEeCCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEEecccccc
Confidence            999999999999997654     5999999999999999999999   89999999999999999999999999999986


Q ss_pred             cCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          225 IPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       225 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .......  .....||+.|+|||.+.+..++.++|||||||++|||++|+.||...
T Consensus       160 ~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  213 (345)
T 3a8x_A          160 GLRPGDT--TSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIV  213 (345)
T ss_dssp             SCCTTCC--BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTT
T ss_pred             ccCCCCc--ccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCc
Confidence            4332211  24567999999999999989999999999999999999999999753

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=4.2e-44  Score=328.67  Aligned_cols=202  Identities=19%  Similarity=0.205  Sum_probs=179.6

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      ...++|.+.+.||+|+||.||+|..  ++..||+|++.... .....+.+.+|+.++++++||||+++++++.+.+..++
T Consensus        26 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~l  105 (362)
T 2bdw_A           26 KFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYL  105 (362)
T ss_dssp             HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             CcccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEE
Confidence            3456799999999999999999998  78899999997553 44456778999999999999999999999999999999


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC---CceEEecCCC
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE---NVAKLFDFSE  221 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~---~~~kl~Dfg~  221 (338)
                      ||||+++|+|.+.+....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.+   +.+||+|||+
T Consensus       106 v~e~~~gg~L~~~l~~~~-----~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~  177 (362)
T 2bdw_A          106 VFDLVTGGELFEDIVARE-----FYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGL  177 (362)
T ss_dssp             EECCCCSCBHHHHHTTCS-----CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEESCSSTTCCEEECCCTT
T ss_pred             EEecCCCCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEeecCc
Confidence            999999999999997654     5899999999999999999999   8999999999999999865   4599999999


Q ss_pred             CcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          222 SISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       222 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      +.........   ....||+.|+|||++.+..++.++|||||||++|+|++|+.||...
T Consensus       178 a~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~  233 (362)
T 2bdw_A          178 AIEVNDSEAW---HGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE  233 (362)
T ss_dssp             CBCCTTCCSC---CCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ceEecCCccc---ccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence            9876644322   4457999999999999889999999999999999999999999753

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=4.8e-45  Score=333.60  Aligned_cols=203  Identities=19%  Similarity=0.220  Sum_probs=174.3

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcc
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIP  142 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~  142 (338)
                      ...++|.+.+.||+|+||.||+|..  +++.||+|++.+..  .....+.+.+|..++..+ +||||+++++++.+.+..
T Consensus        20 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~   99 (353)
T 3txo_A           20 LGIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRL   99 (353)
T ss_dssp             ---CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEE
T ss_pred             CchhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEE
Confidence            3356899999999999999999998  78899999997542  223456788999999988 699999999999999999


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSES  222 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a  222 (338)
                      ++||||+++|+|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||++
T Consensus       100 ~lv~E~~~gg~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NILl~~~g~ikL~DFG~a  171 (353)
T 3txo_A          100 FFVMEFVNGGDLMFHIQKSR-----RFDEARARFYAAEIISALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMC  171 (353)
T ss_dssp             EEEEECCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTC
T ss_pred             EEEEeCCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCCcccCCCHHHEEECCCCCEEEccccce
Confidence            99999999999999997754     5999999999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          223 ISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       223 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      +........  .....||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus       172 ~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~  227 (353)
T 3txo_A          172 KEGICNGVT--TATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAE  227 (353)
T ss_dssp             BCSCC-----------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             eecccCCcc--ccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCC
Confidence            864332221  24567999999999998888999999999999999999999999754

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=2.1e-45  Score=341.81  Aligned_cols=208  Identities=14%  Similarity=0.157  Sum_probs=181.1

Q ss_pred             HHHHHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeec
Q 038823           63 AKELEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLE  138 (338)
Q Consensus        63 ~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~  138 (338)
                      ..++....++|.+.+.||+|+||.||+|..  ++..||+|++.+..  .....+.+.+|+.+++.++||||+++++++.+
T Consensus        61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~  140 (410)
T 3v8s_A           61 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD  140 (410)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             HHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEE
Confidence            345666778999999999999999999999  78899999986421  11122457899999999999999999999999


Q ss_pred             CCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEec
Q 038823          139 TPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFD  218 (338)
Q Consensus       139 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~D  218 (338)
                      .+..++||||++||+|.+++...      .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|
T Consensus       141 ~~~~~lV~E~~~gg~L~~~l~~~------~~~e~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~D  211 (410)
T 3v8s_A          141 DRYLYMVMEYMPGGDLVNLMSNY------DVPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLAD  211 (410)
T ss_dssp             SSEEEEEECCCTTEEHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECC
T ss_pred             CCEEEEEEeCCCCCcHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeeECCCCCEEEec
Confidence            99999999999999999999754      5899999999999999999999   89999999999999999999999999


Q ss_pred             CCCCcccCCCCceeeeecccccCCcccccccccCC----CCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          219 FSESISIPEGETHIITRSRFGAWTYSAPEYKRGGV----FNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       219 fg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ||+++........ ......||+.|+|||++.+..    ++.++|||||||++|||+||+.||...
T Consensus       212 FG~a~~~~~~~~~-~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~  276 (410)
T 3v8s_A          212 FGTCMKMNKEGMV-RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD  276 (410)
T ss_dssp             CTTCEECCTTSEE-ECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             cceeEeeccCCcc-cccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCC
Confidence            9999876554322 224667999999999997655    789999999999999999999999754

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=4.7e-45  Score=336.27  Aligned_cols=206  Identities=20%  Similarity=0.258  Sum_probs=168.4

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE-----CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcce
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW-----QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~-----~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      ..++|++.+.||+|+||.||+|.+     ++..||+|.+.........+.+.+|+.++++++||||+++++++.+.+..+
T Consensus        43 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~  122 (373)
T 2qol_A           43 DATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVM  122 (373)
T ss_dssp             CGGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCE
T ss_pred             CHhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceE
Confidence            345799999999999999999987     356799999987656666778999999999999999999999999999999


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      +||||+++|+|.+++.....    .+++..++.++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||+++
T Consensus       123 lv~e~~~~~sL~~~l~~~~~----~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~  195 (373)
T 2qol_A          123 IVTEYMENGSLDSFLRKHDA----QFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLAARNILINSNLVCKVSDFGLGR  195 (373)
T ss_dssp             EEEECCTTCBHHHHHHTTTT----CSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC----
T ss_pred             EEEeCCCCCcHHHHHHhCCC----CCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEEcCCCCEEECcCcccc
Confidence            99999999999999987653    6999999999999999999999   8999999999999999999999999999998


Q ss_pred             ccCCCCcee-eeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          224 SIPEGETHI-ITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       224 ~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      ......... ......++..|+|||.+.+..++.++||||||+++|||++ |+.||....
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~  255 (373)
T 2qol_A          196 VLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMS  255 (373)
T ss_dssp             ------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCC
T ss_pred             ccccCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCC
Confidence            765432211 1123345778999999999999999999999999999998 999997543

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=2.3e-45  Score=332.52  Aligned_cols=205  Identities=20%  Similarity=0.317  Sum_probs=170.3

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCe----EEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcce
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QER----LISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~----~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      .++|+..+.||+|+||.||+|.+  ++.    .||+|.+.........+.+.+|+.++++++||||++++++|.+.. .+
T Consensus        14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~   92 (327)
T 3poz_A           14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ   92 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EE
T ss_pred             HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eE
Confidence            35688899999999999999998  444    368888865544555678999999999999999999999998754 78


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      +|+||+.+|+|.+++.....    .+++..++.++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||+++
T Consensus        93 ~v~e~~~~g~L~~~l~~~~~----~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~  165 (327)
T 3poz_A           93 LITQLMPFGCLLDYVREHKD----NIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAK  165 (327)
T ss_dssp             EEEECCTTCBHHHHHHHSTT----SCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTHHH
T ss_pred             EEEEecCCCcHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCChheEEECCCCCEEEccCccee
Confidence            99999999999999987653    6999999999999999999999   8999999999999999999999999999998


Q ss_pred             ccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccC
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRT  282 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~  282 (338)
                      ...............+|..|+|||.+.+..++.++||||||+++|||+| |+.||.....
T Consensus       166 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~  225 (327)
T 3poz_A          166 LLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA  225 (327)
T ss_dssp             HHTTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG
T ss_pred             EccCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCH
Confidence            7765544333345567889999999999999999999999999999999 9999986443

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=1.7e-44  Score=328.87  Aligned_cols=204  Identities=20%  Similarity=0.266  Sum_probs=178.2

Q ss_pred             HHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCc
Q 038823           67 EIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPI  141 (338)
Q Consensus        67 ~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~  141 (338)
                      ....++|.+.+.||+|+||.||+|..  +++.||+|.+.+..  .....+.+..|..++..+ +||||+++++++.+.+.
T Consensus        13 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~   92 (345)
T 1xjd_A           13 KLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKEN   92 (345)
T ss_dssp             ---CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSE
T ss_pred             CCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCE
Confidence            45567899999999999999999999  78999999997542  122346678899999887 89999999999999999


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCC
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSE  221 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~  221 (338)
                      .++||||+++|+|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+
T Consensus        93 ~~lv~E~~~gg~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~  164 (345)
T 1xjd_A           93 LFFVMEYLNGGDLMYHIQSCH-----KFDLSRATFYAAEIILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGM  164 (345)
T ss_dssp             EEEEEECCTTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTT
T ss_pred             EEEEEeCCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCChhhEEECCCCCEEEeEChh
Confidence            999999999999999997654     5999999999999999999999   89999999999999999999999999999


Q ss_pred             CcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          222 SISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       222 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ++........  .....||+.|+|||.+.+..++.++|||||||++|||++|+.||...
T Consensus       165 a~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~  221 (345)
T 1xjd_A          165 CKENMLGDAK--TNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQ  221 (345)
T ss_dssp             CBCCCCTTCC--BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             hhhcccCCCc--ccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCC
Confidence            9865332221  24567999999999999989999999999999999999999999753

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=1.8e-44  Score=329.44  Aligned_cols=198  Identities=14%  Similarity=0.133  Sum_probs=178.3

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      .++|...+.||+|+||.||+|..  +++.||+|++....  .....+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus        40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  119 (350)
T 1rdq_E           40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV  119 (350)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEE
Confidence            35789999999999999999999  78999999986542  123356788999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||+++|+|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+++..
T Consensus       120 ~e~~~gg~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~  191 (350)
T 1rdq_E          120 MEYVAGGEMFSHLRRIG-----RFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV  191 (350)
T ss_dssp             EECCTTCBHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             EcCCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCcccccCccceEEECCCCCEEEcccccceec
Confidence            99999999999998754     5999999999999999999999   899999999999999999999999999999876


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ....     ....||+.|+|||.+.+..++.++|||||||++|||++|+.||...
T Consensus       192 ~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~  241 (350)
T 1rdq_E          192 KGRT-----WTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFAD  241 (350)
T ss_dssp             SSCB-----CCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cCCc-----ccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCC
Confidence            5432     3456999999999999989999999999999999999999999754

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=4.9e-44  Score=319.48  Aligned_cols=199  Identities=17%  Similarity=0.180  Sum_probs=168.9

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCc-------------------------hHHHHHHHHHHHHh
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSD-------------------------SACKFSINNIVYAA  122 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~-------------------------~~~~~~~~e~~~l~  122 (338)
                      .++|.+.+.||+|+||.||+|.+  +++.||+|.+......                         ...+.+.+|+.+++
T Consensus        12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~   91 (298)
T 2zv2_A           12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK   91 (298)
T ss_dssp             ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred             ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence            46799999999999999999998  7899999998654211                         12356889999999


Q ss_pred             ccCCcceeeeeeeeec--CCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecC
Q 038823          123 QMDHKHILKLIGCCLE--TPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGN  200 (338)
Q Consensus       123 ~l~h~niv~l~~~~~~--~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~d  200 (338)
                      +++||||+++++++.+  .+..++||||+++++|.+++...      .+++..+..++.|++.||.|||   +.+|+|||
T Consensus        92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~------~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~D  162 (298)
T 2zv2_A           92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLK------PLSEDQARFYFQDLIKGIEYLH---YQKIIHRD  162 (298)
T ss_dssp             TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCSS------CCCHHHHHHHHHHHHHHHHHHH---HTTEECCC
T ss_pred             hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHH---HCCeeccC
Confidence            9999999999999986  56789999999999998865432      6999999999999999999999   89999999


Q ss_pred             CCCCceeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCC---CCccchHHHHHHHHHHHHhCCCCc
Q 038823          201 LISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGV---FNEKLDVYTFSTVLLELLTGQSTR  277 (338)
Q Consensus       201 ik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~s~Gv~l~el~tG~~p~  277 (338)
                      |||+||+++.++.+||+|||++.........  .....||+.|+|||.+.+..   ++.++||||||+++|+|++|+.||
T Consensus       163 lkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf  240 (298)
T 2zv2_A          163 IKPSNLLVGEDGHIKIADFGVSNEFKGSDAL--LSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPF  240 (298)
T ss_dssp             CCGGGEEECTTSCEEECCCTTCEECSSSSCE--ECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSS
T ss_pred             CCHHHEEECCCCCEEEecCCCcccccccccc--ccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCC
Confidence            9999999999999999999999876544322  14557999999999987665   478899999999999999999999


Q ss_pred             CC
Q 038823          278 DL  279 (338)
Q Consensus       278 ~~  279 (338)
                      ..
T Consensus       241 ~~  242 (298)
T 2zv2_A          241 MD  242 (298)
T ss_dssp             CC
T ss_pred             CC
Confidence            75

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=6.2e-44  Score=323.06  Aligned_cols=200  Identities=17%  Similarity=0.144  Sum_probs=177.9

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCc-----hHHHHHHHHHHHHhccCCcceeeeeeeeecCCcc
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSD-----SACKFSINNIVYAAQMDHKHILKLIGCCLETPIP  142 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~-----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~  142 (338)
                      .+.|.+.+.||+|+||.||+|..  ++..||+|.+......     ...+.+.+|+.++++++||||+++++++.+.+..
T Consensus        10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~   89 (326)
T 2y0a_A           10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV   89 (326)
T ss_dssp             HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEE
Confidence            35588899999999999999999  6889999998754321     2357789999999999999999999999999999


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC----ceEEec
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN----VAKLFD  218 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~----~~kl~D  218 (338)
                      ++||||+++++|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++    .+||+|
T Consensus        90 ~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~kl~D  161 (326)
T 2y0a_A           90 ILILELVAGGELFDFLAEKE-----SLTEEEATEFLKQILNGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIID  161 (326)
T ss_dssp             EEEEECCCSCBHHHHHTTSS-----CCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCSSSSSCCEEECC
T ss_pred             EEEEEcCCCCCHHHHHHhcC-----CcCHHHHHHHHHHHHHHHHHHH---HCCeEcCCCCHHHEEEecCCCCCCCEEEEE
Confidence            99999999999999997653     6999999999999999999999   89999999999999999887    799999


Q ss_pred             CCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          219 FSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       219 fg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ||++.........   ....||+.|+|||.+.+..++.++|||||||++|+|++|+.||...
T Consensus       162 fg~a~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~  220 (326)
T 2y0a_A          162 FGLAHKIDFGNEF---KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD  220 (326)
T ss_dssp             CTTCEECCTTSCC---CCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             CCCCeECCCCCcc---ccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCC
Confidence            9999877543322   4456999999999999889999999999999999999999999753

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=2.1e-44  Score=329.28  Aligned_cols=202  Identities=19%  Similarity=0.195  Sum_probs=177.6

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcce
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~  143 (338)
                      ..++|.+.+.||+|+||.||+|..  +++.||+|++.+..  .....+.+.+|..++..+ +||||+++++++.+.+..+
T Consensus        18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~   97 (353)
T 2i0e_A           18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY   97 (353)
T ss_dssp             -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred             chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence            456899999999999999999999  57889999997542  123346788999999988 7999999999999999999


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      +||||+++|+|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||++.
T Consensus        98 lv~E~~~gg~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~  169 (353)
T 2i0e_A           98 FVMEYVNGGDLMYHIQQVG-----RFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCK  169 (353)
T ss_dssp             EEEECCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCB
T ss_pred             EEEeCCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEEcCCCcEEEEeCCccc
Confidence            9999999999999998654     5999999999999999999999   8999999999999999999999999999998


Q ss_pred             ccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ........  .....||+.|+|||.+.+..++.++|||||||++|||++|+.||...
T Consensus       170 ~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~  224 (353)
T 2i0e_A          170 ENIWDGVT--TKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE  224 (353)
T ss_dssp             CCCCTTCC--BCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccccCCcc--cccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCC
Confidence            64332211  24567999999999999999999999999999999999999999753

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=9.4e-44  Score=328.74  Aligned_cols=200  Identities=16%  Similarity=0.126  Sum_probs=178.4

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      .++|.+.+.||+|+||.||+|..  ++..||+|.+... .......+.+|+.++++++||||+++++++.+.+..++|||
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~-~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E  128 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTP-YPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILE  128 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-SHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEE
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEeccc-chhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEE
Confidence            46799999999999999999999  7889999998765 33344678999999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC--CCceEEecCCCCccc
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE--ENVAKLFDFSESISI  225 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~--~~~~kl~Dfg~a~~~  225 (338)
                      |+++|+|.+++.....    .+++..+..++.||+.||.|||   +.+|+||||||+|||++.  ++.+||+|||++...
T Consensus       129 ~~~gg~L~~~l~~~~~----~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~  201 (387)
T 1kob_A          129 FLSGGELFDRIAAEDY----KMSEAEVINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKL  201 (387)
T ss_dssp             CCCCCBHHHHTTCTTC----CBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTCCCEEECCCTTCEEC
T ss_pred             cCCCCcHHHHHHhhcC----CCCHHHHHHHHHHHHHHHHHHH---hCCeeecccchHHeEEecCCCCceEEEecccceec
Confidence            9999999999976543    6899999999999999999999   899999999999999974  477999999999877


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ......   ....||+.|+|||++.+..++.++|||||||++|||+||+.||...
T Consensus       202 ~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~  253 (387)
T 1kob_A          202 NPDEIV---KVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGE  253 (387)
T ss_dssp             CTTSCE---EEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             CCCcce---eeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCC
Confidence            654332   3446899999999999989999999999999999999999999754

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=2.5e-44  Score=327.41  Aligned_cols=214  Identities=22%  Similarity=0.263  Sum_probs=183.6

Q ss_pred             HHHHHhhcCCCcCCccccCCCceEEEEEECC-------eEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeee
Q 038823           64 KELEIATNNYDERKFIKQDSTYKLYKGFWQE-------RLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC  136 (338)
Q Consensus        64 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~-------~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~  136 (338)
                      ..+....++|.+.+.||+|+||.||+|.+.+       ..||+|.+.........+.+.+|+.++++++||||+++++++
T Consensus        40 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~  119 (343)
T 1luf_A           40 LSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVC  119 (343)
T ss_dssp             HHTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             ceeEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence            3445567899999999999999999999832       789999998765666667899999999999999999999999


Q ss_pred             ecCCcceEEEeecCCCCHHHhhhcCCCCC-------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCee
Q 038823          137 LETPIPILVFEYGEYTTLRDRIFGAPQPH-------------------FEPLLLKHRLKVAMGIAHALAYLHVGFPRPIV  197 (338)
Q Consensus       137 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~-------------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ii  197 (338)
                      .+.+..++||||+++|+|.+++.......                   ...+++..++.++.||+.||.|||   +.+|+
T Consensus       120 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH---~~~iv  196 (343)
T 1luf_A          120 AVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFV  196 (343)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCC
T ss_pred             ccCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCee
Confidence            99999999999999999999997643110                   136999999999999999999999   89999


Q ss_pred             ecCCCCCceeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCC
Q 038823          198 FGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQST  276 (338)
Q Consensus       198 H~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p  276 (338)
                      ||||||+||+++.++.+||+|||++................+|+.|+|||.+.+..++.++||||||+++|||+| |+.|
T Consensus       197 H~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p  276 (343)
T 1luf_A          197 HRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQP  276 (343)
T ss_dssp             CSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCT
T ss_pred             cCCCCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCc
Confidence            999999999999999999999999977654332222245568899999999998899999999999999999999 9999


Q ss_pred             cCCc
Q 038823          277 RDLL  280 (338)
Q Consensus       277 ~~~~  280 (338)
                      |...
T Consensus       277 ~~~~  280 (343)
T 1luf_A          277 YYGM  280 (343)
T ss_dssp             TTTS
T ss_pred             CCCC
Confidence            9754

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=6.6e-45  Score=327.10  Aligned_cols=216  Identities=21%  Similarity=0.265  Sum_probs=186.8

Q ss_pred             HHHHHhhcCCCcCCccccCCCceEEEEEE-------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeee
Q 038823           64 KELEIATNNYDERKFIKQDSTYKLYKGFW-------QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC  136 (338)
Q Consensus        64 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~  136 (338)
                      .++....++|.+.+.||+|+||.||+|..       ++..||+|.+.........+.+.+|+.++++++||||+++++++
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~   95 (314)
T 2ivs_A           16 PKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGAC   95 (314)
T ss_dssp             TTTBCCGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred             cccccchhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEE
Confidence            34455677899999999999999999986       33789999998766666678899999999999999999999999


Q ss_pred             ecCCcceEEEeecCCCCHHHhhhcCCCC-------------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCee
Q 038823          137 LETPIPILVFEYGEYTTLRDRIFGAPQP-------------------HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIV  197 (338)
Q Consensus       137 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~-------------------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ii  197 (338)
                      .+.+..++||||+++++|.+++......                   ....+++..++.++.|++.||.|||   +.+|+
T Consensus        96 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~iv  172 (314)
T 2ivs_A           96 SQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLA---EMKLV  172 (314)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHH---HTTEE
T ss_pred             ecCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHH---HCCCc
Confidence            9999999999999999999999865320                   0124899999999999999999999   89999


Q ss_pred             ecCCCCCceeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCC
Q 038823          198 FGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQST  276 (338)
Q Consensus       198 H~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p  276 (338)
                      ||||||+||+++.++.+||+|||++................+|+.|+|||.+.+..++.++||||||+++|||+| |+.|
T Consensus       173 H~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p  252 (314)
T 2ivs_A          173 HRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNP  252 (314)
T ss_dssp             CCCCSGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCS
T ss_pred             ccccchheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999987765544433345567889999999998889999999999999999999 9999


Q ss_pred             cCCccC
Q 038823          277 RDLLRT  282 (338)
Q Consensus       277 ~~~~~~  282 (338)
                      |.....
T Consensus       253 ~~~~~~  258 (314)
T 2ivs_A          253 YPGIPP  258 (314)
T ss_dssp             STTCCG
T ss_pred             CCCCCH
Confidence            976443

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=7.1e-44  Score=334.99  Aligned_cols=203  Identities=17%  Similarity=0.125  Sum_probs=178.4

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      ...++|.+.+.||+|+||.||+|..  ++..+|+|++.... .....+.+.+|+.++++++||||+++++++.+.+..++
T Consensus         8 ~~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~l   87 (444)
T 3soa_A            8 RFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYL   87 (444)
T ss_dssp             HHHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEE
T ss_pred             cccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEE
Confidence            3456799999999999999999998  88999999997653 33445678999999999999999999999999999999


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeC---CCCceEEecCCC
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFN---EENVAKLFDFSE  221 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~---~~~~~kl~Dfg~  221 (338)
                      ||||+++|+|.+.+....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++   .++.+||+|||+
T Consensus        88 v~E~~~gg~L~~~i~~~~-----~~~e~~~~~i~~qil~aL~~lH---~~givHrDlKp~NIll~~~~~~~~vkL~DFG~  159 (444)
T 3soa_A           88 IFDLVTGGELFEDIVARE-----YYSEADASHCIQQILEAVLHCH---QMGVVHRNLKPENLLLASKLKGAAVKLADFGL  159 (444)
T ss_dssp             EECCCBCCBHHHHHHHCS-----CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSSTTEEESBSSTTCCEEECCCSS
T ss_pred             EEEeCCCCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEeccCCCCcEEEccCce
Confidence            999999999999998764     5999999999999999999999   89999999999999998   467899999999


Q ss_pred             CcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          222 SISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       222 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      +..........  ....||+.|+|||++.+..++.++|||||||++|+|++|++||...
T Consensus       160 a~~~~~~~~~~--~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~  216 (444)
T 3soa_A          160 AIEVEGEQQAW--FGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDE  216 (444)
T ss_dssp             CBCCCTTCCBC--CCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             eEEecCCCcee--ecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCc
Confidence            98765543221  4467999999999999889999999999999999999999999753

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=5.2e-45  Score=320.98  Aligned_cols=203  Identities=19%  Similarity=0.274  Sum_probs=179.1

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ...++|...+.||+|+||.||+|.+ +++.||+|++......  .+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus         7 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~--~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   84 (269)
T 4hcu_A            7 IDPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS--EEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVF   84 (269)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSBC--HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEE
T ss_pred             eChhhceeeheecCCCccEEEEEEecCCCeEEEEEecccccC--HHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEE
Confidence            4456788999999999999999999 8889999999865322  367899999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++++|.+++.....    .+++..++.++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++....
T Consensus        85 e~~~~~~L~~~l~~~~~----~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~  157 (269)
T 4hcu_A           85 EFMEHGCLSDYLRTQRG----LFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVL  157 (269)
T ss_dssp             ECCTTCBHHHHHHTTTT----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBC
T ss_pred             EeCCCCcHHHHHHhcCc----ccCHHHHHHHHHHHHHHHHHHH---hCCeecCCcchheEEEcCCCCEEecccccccccc
Confidence            99999999999976553    6999999999999999999999   8999999999999999999999999999998765


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      ...... .....+|..|+|||.+.+..++.++||||||+++|+|+| |+.||...
T Consensus       158 ~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~  211 (269)
T 4hcu_A          158 DDQYTS-STGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR  211 (269)
T ss_dssp             CHHHHS-TTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             cccccc-ccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCC
Confidence            432211 134456788999999998999999999999999999999 99999754

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=2.8e-45  Score=337.15  Aligned_cols=209  Identities=18%  Similarity=0.208  Sum_probs=178.9

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE-------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCc
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW-------QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPI  141 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~-------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~  141 (338)
                      ..++|.+.+.||+|+||.||+|.+       ++..||+|++...........+.+|+.++++++||||+++++++.+.+.
T Consensus        69 ~~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~  148 (367)
T 3l9p_A           69 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLP  148 (367)
T ss_dssp             CGGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             CHhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCC
Confidence            346788899999999999999994       4568999999876566666789999999999999999999999999999


Q ss_pred             ceEEEeecCCCCHHHhhhcCCC--CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC---ceEE
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQ--PHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN---VAKL  216 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~--~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~---~~kl  216 (338)
                      .++||||+++|+|.+++.....  .....+++..++.++.||+.||.|||   +.+|+||||||+|||++.++   .+||
T Consensus       149 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~~kL  225 (367)
T 3l9p_A          149 RFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKI  225 (367)
T ss_dssp             CEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEE
T ss_pred             CEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEEecCCCCceEEE
Confidence            9999999999999999976432  11125899999999999999999999   89999999999999999555   5999


Q ss_pred             ecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          217 FDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       217 ~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      +|||+++...............||+.|+|||.+.+..++.++|||||||++|||+| |+.||...
T Consensus       226 ~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~  290 (367)
T 3l9p_A          226 GDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSK  290 (367)
T ss_dssp             CCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             CCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            99999975533222222244567899999999999999999999999999999998 99999754

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.9e-44  Score=328.58  Aligned_cols=215  Identities=20%  Similarity=0.290  Sum_probs=182.1

Q ss_pred             HHHHhhcCCCcCCccccCCCceEEEEEE-------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeee
Q 038823           65 ELEIATNNYDERKFIKQDSTYKLYKGFW-------QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCC  136 (338)
Q Consensus        65 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~  136 (338)
                      +++...++|.+.+.||+|+||.||+|.+       ++..||+|.+.........+.+.+|+.++.++ +||||+++++++
T Consensus        39 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~  118 (344)
T 1rjb_A           39 KWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGAC  118 (344)
T ss_dssp             GGBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             CcccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence            4556678899999999999999999996       35679999998654444557889999999999 899999999999


Q ss_pred             ecCCcceEEEeecCCCCHHHhhhcCCCC------------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeee
Q 038823          137 LETPIPILVFEYGEYTTLRDRIFGAPQP------------------HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVF  198 (338)
Q Consensus       137 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~------------------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH  198 (338)
                      ...+..++||||+++|+|.+++......                  ....+++..++.++.|++.||.|||   +.+|+|
T Consensus       119 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH  195 (344)
T 1rjb_A          119 TLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVH  195 (344)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH---HTTEEE
T ss_pred             eeCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCccc
Confidence            9999999999999999999999875421                  0124899999999999999999999   899999


Q ss_pred             cCCCCCceeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCc
Q 038823          199 GNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTR  277 (338)
Q Consensus       199 ~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~  277 (338)
                      |||||+||+++.++.+||+|||++................||+.|+|||.+.+..++.++||||||+++|+|+| |..||
T Consensus       196 ~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~  275 (344)
T 1rjb_A          196 RDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPY  275 (344)
T ss_dssp             TTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSS
T ss_pred             CCCChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCc
Confidence            99999999999999999999999987655444333355668889999999998999999999999999999998 99999


Q ss_pred             CCccC
Q 038823          278 DLLRT  282 (338)
Q Consensus       278 ~~~~~  282 (338)
                      .....
T Consensus       276 ~~~~~  280 (344)
T 1rjb_A          276 PGIPV  280 (344)
T ss_dssp             TTCCC
T ss_pred             ccCCc
Confidence            76543

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=9.5e-45  Score=342.31  Aligned_cols=203  Identities=20%  Similarity=0.262  Sum_probs=177.0

Q ss_pred             HHHhhcCCCcCCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCC-cceE
Q 038823           66 LEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETP-IPIL  144 (338)
Q Consensus        66 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-~~~l  144 (338)
                      ++...++|.+.+.||+|+||.||+|.+.+..||+|.+....   ..+.+.+|+.++++++||||+++++++.+.+ ..++
T Consensus       188 ~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~vavK~~~~~~---~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~i  264 (450)
T 1k9a_A          188 WALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDA---TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYI  264 (450)
T ss_dssp             CBCCGGGEEEEEEEEECSSEEEEEEEETTEEEEEEEESSCT---TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEE
T ss_pred             cccChHHeEEEeeecCcCCeeEEEEEecCCeEEEEEeCCch---HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEE
Confidence            34556788889999999999999999999999999998653   3367899999999999999999999987655 7899


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ||||+++|+|.+++.....   ..+++..++.++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||+++.
T Consensus       265 v~e~~~~g~L~~~l~~~~~---~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~  338 (450)
T 1k9a_A          265 VTEYMAKGSLVDYLRSRGR---SVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKE  338 (450)
T ss_dssp             EEECCTTCBHHHHHHHHCT---TTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred             EEEecCCCcHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEECCCCCEEEeeCCCccc
Confidence            9999999999999987543   24799999999999999999999   89999999999999999999999999999986


Q ss_pred             cCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccC
Q 038823          225 IPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRT  282 (338)
Q Consensus       225 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~  282 (338)
                      .....     ....++..|+|||.+.+..++.++||||||+++|||+| |+.||.....
T Consensus       339 ~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~  392 (450)
T 1k9a_A          339 ASSTQ-----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL  392 (450)
T ss_dssp             CC-----------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCT
T ss_pred             ccccc-----cCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH
Confidence            54321     23357889999999999999999999999999999998 9999986544

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=1.7e-44  Score=324.56  Aligned_cols=204  Identities=22%  Similarity=0.285  Sum_probs=170.4

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcc--
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIP--  142 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~--  142 (338)
                      ..++|.+.+.||+|+||.||+|.+  +++.||+|++....  .......+.+|+.++++++||||+++++++......  
T Consensus        10 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~   89 (311)
T 3ork_A           10 LSDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGP   89 (311)
T ss_dssp             ETTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEE
T ss_pred             ecCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCc
Confidence            346799999999999999999998  88999999997653  234456789999999999999999999998765544  


Q ss_pred             --eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          143 --ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       143 --~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                        ++||||+++++|.+++....     .+++..++.++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||
T Consensus        90 ~~~lv~e~~~g~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg  161 (311)
T 3ork_A           90 LPYIVMEYVDGVTLRDIVHTEG-----PMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFG  161 (311)
T ss_dssp             EEEEEEECCCEEEHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEETTSCEEECCCS
T ss_pred             ccEEEEecCCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEcCCCCEEEeecc
Confidence              99999999999999997654     5999999999999999999999   8999999999999999999999999999


Q ss_pred             CCcccCCCCce-eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          221 ESISIPEGETH-IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       221 ~a~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ++......... .......||+.|+|||.+.+..++.++||||||+++|+|+||+.||...
T Consensus       162 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~  222 (311)
T 3ork_A          162 IARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD  222 (311)
T ss_dssp             CC------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             CcccccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence            99876543222 1224456899999999999999999999999999999999999999754

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.5e-44  Score=334.06  Aligned_cols=213  Identities=20%  Similarity=0.265  Sum_probs=185.7

Q ss_pred             HHHHhhcCCCcCCccccCCCceEEEEEE---------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeee
Q 038823           65 ELEIATNNYDERKFIKQDSTYKLYKGFW---------QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIG  134 (338)
Q Consensus        65 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~---------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~  134 (338)
                      .+....++|.+.+.||+|+||.||+|.+         .+..||+|++...........+.+|+.+++++ +||||+++++
T Consensus        63 ~~~i~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~  142 (382)
T 3tt0_A           63 RWELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLG  142 (382)
T ss_dssp             TTBCCGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             ccccchhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhhee
Confidence            3456677899999999999999999996         22579999998776666778899999999999 8999999999


Q ss_pred             eeecCCcceEEEeecCCCCHHHhhhcCCCC-----------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCC
Q 038823          135 CCLETPIPILVFEYGEYTTLRDRIFGAPQP-----------HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLIS  203 (338)
Q Consensus       135 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~-----------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~  203 (338)
                      ++.+.+..++||||+++|+|.+++......           ....+++..++.++.|++.||.|||   +.+|+||||||
T Consensus       143 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp  219 (382)
T 3tt0_A          143 ACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAA  219 (382)
T ss_dssp             EECSSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCG
T ss_pred             eeccCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCc
Confidence            999999999999999999999999865421           1125999999999999999999999   89999999999


Q ss_pred             CceeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          204 LCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       204 ~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      +|||++.++.+||+|||+++...............+|+.|+|||.+.+..++.++|||||||++|+|+| |..||...
T Consensus       220 ~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~  297 (382)
T 3tt0_A          220 RNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGV  297 (382)
T ss_dssp             GGEEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             ceEEEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCC
Confidence            999999999999999999987765433333345567889999999999999999999999999999999 99999754

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=3.7e-44  Score=322.42  Aligned_cols=205  Identities=18%  Similarity=0.222  Sum_probs=176.2

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      ...++|.+.+.||+|+||+||+|.+ +++.||+|++.... .......+.+|+.++++++||||+++++++.+.+..++|
T Consensus        18 ~l~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv   97 (311)
T 3niz_A           18 GLMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLV   97 (311)
T ss_dssp             CSSCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEE
T ss_pred             chHhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEE
Confidence            3456799999999999999999999 88999999997543 233356788999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||++ ++|.+.+.....    .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++...
T Consensus        98 ~e~~~-~~l~~~~~~~~~----~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~  169 (311)
T 3niz_A           98 FEFME-KDLKKVLDENKT----GLQDSQIKIYLYQLLRGVAHCH---QHRILHRDLKPQNLLINSDGALKLADFGLARAF  169 (311)
T ss_dssp             EECCS-EEHHHHHHTCTT----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEET
T ss_pred             EcCCC-CCHHHHHHhccC----CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCchHhEEECCCCCEEEccCcCceec
Confidence            99999 588888876553    6999999999999999999999   899999999999999999999999999999876


Q ss_pred             CCCCceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ......  .....||+.|+|||.+.+ ..++.++|||||||++|+|+||+.||.....
T Consensus       170 ~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~  225 (311)
T 3niz_A          170 GIPVRS--YTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTD  225 (311)
T ss_dssp             TSCCC-----CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSST
T ss_pred             CCCccc--ccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCCh
Confidence            543222  144568999999999876 4589999999999999999999999986554

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=3e-44  Score=324.16  Aligned_cols=223  Identities=21%  Similarity=0.292  Sum_probs=191.0

Q ss_pred             CCCccccCHHHHHHhhcCCCcCCccccCCCceEEEEEEC-------CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCc
Q 038823           55 YNPYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQ-------ERLISVMKYNESYSDSACKFSINNIVYAAQMDHK  127 (338)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~-------~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~  127 (338)
                      +.....+..++++...++|.+.+.||+|+||.||+|.+.       +..||+|.+...........+.+|+.++++++||
T Consensus         9 ~~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~   88 (322)
T 1p4o_A            9 FSAADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCH   88 (322)
T ss_dssp             SBCCSCCCCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCT
T ss_pred             cccccccChhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCC
Confidence            334455667788888999999999999999999999863       5789999998765556667899999999999999


Q ss_pred             ceeeeeeeeecCCcceEEEeecCCCCHHHhhhcCCC-----CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCC
Q 038823          128 HILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQ-----PHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLI  202 (338)
Q Consensus       128 niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~-----~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik  202 (338)
                      ||+++++++.+.+..++||||+++|+|.+++.....     .....+++..++.++.|++.||.|||   +.+|+|||||
T Consensus        89 ~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dik  165 (322)
T 1p4o_A           89 HVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN---ANKFVHRDLA  165 (322)
T ss_dssp             TBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCS
T ss_pred             CEeeeEEEEccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHH---HCCCccCCCc
Confidence            999999999999999999999999999999875320     01125799999999999999999999   8999999999


Q ss_pred             CCceeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          203 SLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       203 ~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      |+||+++.++.+||+|||++................+|+.|+|||.+.+..++.++||||||+++|+|+| |+.||...
T Consensus       166 p~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~  244 (322)
T 1p4o_A          166 ARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGL  244 (322)
T ss_dssp             GGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS
T ss_pred             cceEEEcCCCeEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccC
Confidence            9999999999999999999987654433322244457889999999998899999999999999999999 89999754

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=3.5e-45  Score=345.72  Aligned_cols=211  Identities=18%  Similarity=0.230  Sum_probs=182.4

Q ss_pred             cCHHHHHHhhcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecC
Q 038823           61 FSAKELEIATNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLET  139 (338)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~  139 (338)
                      +...+++...++|.+.+.||+|+||.||+|.+ ++..||+|++....  ...+.+.+|+.+|++++||||+++++++. .
T Consensus       178 ~~~~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~  254 (454)
T 1qcf_A          178 WEKDAWEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS--MSVEAFLAEANVMKTLQHDKLVKLHAVVT-K  254 (454)
T ss_dssp             CCTTCSBCCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS--BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-S
T ss_pred             ccccceeechHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC--ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-C
Confidence            34556778888999999999999999999999 68899999998653  23578999999999999999999999986 5


Q ss_pred             CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecC
Q 038823          140 PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDF  219 (338)
Q Consensus       140 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Df  219 (338)
                      +..++||||+++|+|.+++.....   ..+++..++.++.||+.||.|||   +.+|+||||||+|||++.++.+||+||
T Consensus       255 ~~~~lv~e~~~~g~L~~~l~~~~~---~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DF  328 (454)
T 1qcf_A          255 EPIYIITEFMAKGSLLDFLKSDEG---SKQPLPKLIDFSAQIAEGMAFIE---QRNYIHRDLRAANILVSASLVCKIADF  328 (454)
T ss_dssp             SSCEEEECCCTTCBHHHHHHSHHH---HTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTCCEEECST
T ss_pred             CccEEEEeecCCCcHHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCHHHEEECCCCcEEEeeC
Confidence            678999999999999999976431   25889999999999999999999   899999999999999999999999999


Q ss_pred             CCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          220 SESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       220 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      |+++......... .....++..|+|||.+....++.++|||||||++|||+| |+.||....
T Consensus       329 G~a~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~  390 (454)
T 1qcf_A          329 GLARVIEDNEYTA-REGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMS  390 (454)
T ss_dssp             TGGGGBCCHHHHT-TCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred             CCceEcCCCceec-cCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCC
Confidence            9998765432111 133446788999999998999999999999999999999 999998643

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=1.3e-44  Score=345.16  Aligned_cols=209  Identities=20%  Similarity=0.297  Sum_probs=182.9

Q ss_pred             HHHHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCc
Q 038823           64 KELEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPI  141 (338)
Q Consensus        64 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~  141 (338)
                      .+++...++|.+.+.||+|+||.||+|.+  ++..||+|.+.....  ..+.+.+|+.+|++++||||++++++|.+.+.
T Consensus       213 ~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~  290 (495)
T 1opk_A          213 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM--EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP  290 (495)
T ss_dssp             SCCBCCGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS--CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             cccccCHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc--chHHHHHHHHHHHhcCCCCEeeEEEEEecCCc
Confidence            34556677888899999999999999999  588999999976532  34779999999999999999999999999999


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCC
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSE  221 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~  221 (338)
                      .++||||+++|+|.+++.....   ..+++..++.++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+
T Consensus       291 ~~lv~E~~~~g~L~~~l~~~~~---~~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~  364 (495)
T 1opk_A          291 FYIITEFMTYGNLLDYLRECNR---QEVSAVVLLYMATQISSAMEYLE---KKNFIHRNLAARNCLVGENHLVKVADFGL  364 (495)
T ss_dssp             CEEEEECCTTCBHHHHHHHSCT---TTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCEEECCTTC
T ss_pred             EEEEEEccCCCCHHHHHHhcCc---CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChhhEEECCCCcEEEeeccc
Confidence            9999999999999999986543   26899999999999999999999   89999999999999999999999999999


Q ss_pred             CcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          222 SISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       222 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      ++........ ......++..|+|||.+....++.++|||||||++|||+| |+.||....
T Consensus       365 a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~  424 (495)
T 1opk_A          365 SRLMTGDTYT-AHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID  424 (495)
T ss_dssp             EECCTTCCEE-CCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred             ceeccCCcee-ecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCC
Confidence            9876543322 2234456789999999998889999999999999999999 999998654

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=4.3e-44  Score=321.63  Aligned_cols=216  Identities=18%  Similarity=0.238  Sum_probs=187.7

Q ss_pred             HHHHHhhcCCCcCCccccCCCceEEEEEE-------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeee
Q 038823           64 KELEIATNNYDERKFIKQDSTYKLYKGFW-------QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGC  135 (338)
Q Consensus        64 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~  135 (338)
                      .++....++|.+.+.||+|+||.||+|.+       ++..||+|.+.........+.+.+|+.+++++ +||||++++++
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~   95 (313)
T 1t46_A           16 HKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGA   95 (313)
T ss_dssp             GGGBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             cccccChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEE
Confidence            34556678899999999999999999985       45789999998765555668899999999999 89999999999


Q ss_pred             eecCCcceEEEeecCCCCHHHhhhcCCCC-------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCC
Q 038823          136 CLETPIPILVFEYGEYTTLRDRIFGAPQP-------------HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLI  202 (338)
Q Consensus       136 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~-------------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik  202 (338)
                      +.+.+..++||||+++|+|.+++......             ....+++..++.++.|++.||.|||   +.+|+|||||
T Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlk  172 (313)
T 1t46_A           96 CTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA---SKNCIHRDLA  172 (313)
T ss_dssp             ECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred             EecCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCc
Confidence            99999999999999999999999865421             0124899999999999999999999   8999999999


Q ss_pred             CCceeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          203 SLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       203 ~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      |+||+++.++.+||+|||++................+|+.|+|||.+.+..++.++||||||+++|+|+| |+.||....
T Consensus       173 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~  252 (313)
T 1t46_A          173 ARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMP  252 (313)
T ss_dssp             GGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC
T ss_pred             cceEEEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCccc
Confidence            9999999999999999999987766544433355567889999999999999999999999999999999 999997654


Q ss_pred             C
Q 038823          282 T  282 (338)
Q Consensus       282 ~  282 (338)
                      .
T Consensus       253 ~  253 (313)
T 1t46_A          253 V  253 (313)
T ss_dssp             S
T ss_pred             c
Confidence            3

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=1.4e-44  Score=320.41  Aligned_cols=208  Identities=21%  Similarity=0.253  Sum_probs=168.9

Q ss_pred             HHHhhcCCCcCCccccCCCceEEEEEE-----CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCC
Q 038823           66 LEIATNNYDERKFIKQDSTYKLYKGFW-----QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETP  140 (338)
Q Consensus        66 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~-----~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~  140 (338)
                      +....++|.+.+.||+|+||.||+|.+     .+..||+|.+.........+.+.+|+.++++++||||+++++++. .+
T Consensus        10 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~   88 (281)
T 1mp8_A           10 YEIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-EN   88 (281)
T ss_dssp             CBCCGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SS
T ss_pred             eEEehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cC
Confidence            345567899999999999999999998     245699999887655666678999999999999999999999985 56


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                      ..++||||+++++|.+++.....    .+++..++.++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||
T Consensus        89 ~~~lv~e~~~~~~L~~~l~~~~~----~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg  161 (281)
T 1mp8_A           89 PVWIIMELCTLGELRSFLQVRKY----SLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFG  161 (281)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTTT----TSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECC--
T ss_pred             ccEEEEecCCCCCHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHH---hCCeecccccHHHEEECCCCCEEECccc
Confidence            78999999999999999986543    6999999999999999999999   8999999999999999999999999999


Q ss_pred             CCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccC
Q 038823          221 ESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRT  282 (338)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~  282 (338)
                      ++.......... .....+|+.|+|||.+....++.++||||||+++|||++ |..||.....
T Consensus       162 ~~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~  223 (281)
T 1mp8_A          162 LSRYMEDSTYYK-ASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN  223 (281)
T ss_dssp             ------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCG
T ss_pred             cccccCcccccc-cccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCH
Confidence            998765433221 134456788999999998899999999999999999997 9999986443

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=5.2e-44  Score=328.91  Aligned_cols=202  Identities=21%  Similarity=0.183  Sum_probs=169.1

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHH-HhccCCcceeeeeeeeecCCcce
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVY-AAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~-l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      ..++|.+.+.||+|+||.||+|..  ++..||+|++.+..  .......+.+|..+ ++.++||||+++++++.+.+..|
T Consensus        36 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~  115 (373)
T 2r5t_A           36 KPSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLY  115 (373)
T ss_dssp             CGGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEE
T ss_pred             ChhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEE
Confidence            346799999999999999999999  68899999997543  22334566777776 57789999999999999999999


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      +||||+++|+|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+++
T Consensus       116 lv~E~~~gg~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~ikL~DFG~a~  187 (373)
T 2r5t_A          116 FVLDYINGGELFYHLQRER-----CFLEPRARFYAAEIASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCK  187 (373)
T ss_dssp             EEEECCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCBCG
T ss_pred             EEEeCCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEeeCcccc
Confidence            9999999999999997654     5899999999999999999999   8999999999999999999999999999998


Q ss_pred             ccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ........  .....||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus       188 ~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~  242 (373)
T 2r5t_A          188 ENIEHNST--TSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSR  242 (373)
T ss_dssp             GGBCCCCC--CCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             ccccCCCc--cccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCC
Confidence            64332211  24567999999999999999999999999999999999999999753

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=2.7e-44  Score=338.96  Aligned_cols=202  Identities=15%  Similarity=0.156  Sum_probs=169.1

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcC--CCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNES--YSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~--~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      ..++|.+.+.||+|+||.||+|..  +++.||+|++...  ........+.+|+.+++.++||||+++++++.+.+..++
T Consensus       146 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  225 (446)
T 4ejn_A          146 TMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCF  225 (446)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEE
T ss_pred             ChHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEE
Confidence            346799999999999999999998  7889999999753  233345677899999999999999999999999999999


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFP-RPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~-~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      ||||+++|+|.+++....     .+++..+..++.||+.||.|||   + .+|+||||||+|||++.++.+||+|||+++
T Consensus       226 v~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH---~~~giiHrDlkp~NIll~~~~~~kl~DFG~a~  297 (446)
T 4ejn_A          226 VMEYANGGELFFHLSRER-----VFSEDRARFYGAEIVSALDYLH---SEKNVVYRDLKLENLMLDKDGHIKITDFGLCK  297 (446)
T ss_dssp             EECCCSSCBHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCCCGGGEEECSSSCEEECCCCCCC
T ss_pred             EEeeCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHh---hcCCEEECCCCHHHEEECCCCCEEEccCCCce
Confidence            999999999999997654     5999999999999999999999   7 899999999999999999999999999998


Q ss_pred             ccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ........  .....||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus       298 ~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~  352 (446)
T 4ejn_A          298 EGIKDGAT--MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ  352 (446)
T ss_dssp             TTCC-------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             eccCCCcc--cccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCC
Confidence            64433222  14567999999999999999999999999999999999999999753

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=3.2e-44  Score=315.68  Aligned_cols=203  Identities=17%  Similarity=0.196  Sum_probs=179.2

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      ..++|.+.+.||+|+||.||+|.+ ++..||+|++......  .+.+.+|+.++.+++||||+++++++.+.+..++|||
T Consensus         6 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~--~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   83 (268)
T 3sxs_A            6 KREEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMS--EDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTE   83 (268)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTBC--HHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred             chhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCCc--HHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEE
Confidence            456788999999999999999999 6778999999765322  3678999999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |+++++|.+++.....    .+++..++.++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++.....
T Consensus        84 ~~~~~~L~~~l~~~~~----~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~  156 (268)
T 3sxs_A           84 YISNGCLLNYLRSHGK----GLEPSQLLEMCYDVCEGMAFLE---SHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLD  156 (268)
T ss_dssp             CCTTCBHHHHHHHHGG----GCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCSGGGEEECTTCCEEECCTTCEEECCT
T ss_pred             ccCCCcHHHHHHHcCC----CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCcCcceEEECCCCCEEEccCccceecch
Confidence            9999999999977543    6999999999999999999999   89999999999999999999999999999987665


Q ss_pred             CCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      ...... ....+|..|+|||.+.+..++.++||||||+++|+|+| |+.||....
T Consensus       157 ~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~  210 (268)
T 3sxs_A          157 DQYVSS-VGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYT  210 (268)
T ss_dssp             TCEEEC-CSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSC
T ss_pred             hhhhcc-cCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccC
Confidence            443222 44556778999999988889999999999999999999 999997543

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=1.4e-43  Score=321.14  Aligned_cols=247  Identities=13%  Similarity=0.094  Sum_probs=197.4

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcceEEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      .++|.+.+.||+|+||.||+|..  +++.||+|.+......   +.+.+|+.+++++ +|+||+++++++...+..++||
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~   84 (330)
T 2izr_A            8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRA---PQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVL   84 (330)
T ss_dssp             TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCSS---CCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEE
T ss_pred             cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccch---HHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEE
Confidence            46799999999999999999997  8899999998754322   3578999999999 8999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCc-----eEEecCCC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENV-----AKLFDFSE  221 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~-----~kl~Dfg~  221 (338)
                      ||+ +++|.+++.....    .+++..++.++.|++.||.|||   +.+|+||||||+|||++.++.     +||+|||+
T Consensus        85 e~~-~~~L~~~~~~~~~----~~~~~~~~~i~~qi~~~l~~LH---~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~  156 (330)
T 2izr_A           85 ELL-GPSLEDLFDLCDR----TFSLKTVLMIAIQLISRMEYVH---SKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFAL  156 (330)
T ss_dssp             ECC-CCBHHHHHHHTTT----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTCTTSEEECCCTT
T ss_pred             EeC-CCCHHHHHHHcCC----CCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeeeccCCCCCCceEEEEEccc
Confidence            999 8999999987543    6999999999999999999999   899999999999999998887     99999999


Q ss_pred             CcccCCCCcee-----eeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHHHHH-
Q 038823          222 SISIPEGETHI-----ITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKN-  295 (338)
Q Consensus       222 a~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~~~~-  295 (338)
                      +..........     ......||+.|+|||.+.+..++.++|||||||++|||+||+.||...... +.......+.. 
T Consensus       157 a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~-~~~~~~~~i~~~  235 (330)
T 2izr_A          157 AKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD-TLKERYQKIGDT  235 (330)
T ss_dssp             CEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCS-SHHHHHHHHHHH
T ss_pred             ceeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccc-cHHHHHHHHHhh
Confidence            98765433211     114567999999999999999999999999999999999999999875442 21111111111 


Q ss_pred             HHhc---------CccccccccccccCcCCcccHHHHHHHHH
Q 038823          296 YLQN---------NRFTEIADPIIVQDLSCTETEHQFQACAR  328 (338)
Q Consensus       296 ~~~~---------~~~~~~~d~~l~~~~~~~~~~~~~~~~~~  328 (338)
                      ....         ..+.+++..++..+|..|++..++.++++
T Consensus       236 ~~~~~~~~~~~~~p~~~~li~~~l~~~p~~RP~~~~l~~~l~  277 (330)
T 2izr_A          236 KRATPIEVLCENFPEMATYLRYVRRLDFFEKPDYDYLRKLFT  277 (330)
T ss_dssp             HHHSCHHHHTTTCHHHHHHHHHHHHCCTTCCCCHHHHHHHHH
T ss_pred             hccCCHHHHhccChHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence            1100         14556666677777777777666655443

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=7.6e-44  Score=342.15  Aligned_cols=205  Identities=18%  Similarity=0.256  Sum_probs=181.6

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      ..++|...+.||+|+||.||+|..  +++.||+|++....  .......+.+|+.+|++++||||+++++++.+.+..++
T Consensus       182 ~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~l  261 (576)
T 2acx_A          182 TKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCL  261 (576)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             cccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEE
Confidence            456789999999999999999999  78999999996532  12234668899999999999999999999999999999


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ||||++||+|.+++.....   ..+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||++..
T Consensus       262 VmEy~~gg~L~~~l~~~~~---~~l~e~~~~~i~~qIl~aL~yLH---~~gIvHrDLKPeNILld~~g~vKL~DFGla~~  335 (576)
T 2acx_A          262 VLTLMNGGDLKFHIYHMGQ---AGFPEARAVFYAAEICCGLEDLH---RERIVYRDLKPENILLDDHGHIRISDLGLAVH  335 (576)
T ss_dssp             EECCCCSCBHHHHHHSSSS---CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred             EEEcCCCCcHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCchheEEEeCCCCeEEEeccccee
Confidence            9999999999999977543   25999999999999999999999   89999999999999999999999999999987


Q ss_pred             cCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          225 IPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       225 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      .......   ....||+.|+|||++.+..++.++|||||||++|||++|+.||.....
T Consensus       336 ~~~~~~~---~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~  390 (576)
T 2acx_A          336 VPEGQTI---KGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKK  390 (576)
T ss_dssp             CCTTCCE---ECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSS
T ss_pred             cccCccc---cccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCccccc
Confidence            7654332   445799999999999988899999999999999999999999986543

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=2e-43  Score=310.53  Aligned_cols=199  Identities=21%  Similarity=0.271  Sum_probs=174.3

Q ss_pred             hcCCCcCCccccCCCceEEEEEECCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecC--CcceEEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLET--PIPILVF  146 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~lv~  146 (338)
                      .++|.+.+.||+|+||.||+|.+++..||+|++.... .....+.+.+|+.++++++||||+++++++.+.  +..++||
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   88 (271)
T 3kmu_A            9 FKQLNFLTKLNENHSGELWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLIT   88 (271)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEETTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEE
T ss_pred             HHHhHHHHHhcCCCcceEEEEEECCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeee
Confidence            4578889999999999999999999999999998654 345567799999999999999999999999876  7789999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--eeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRP--IVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ||+++|+|.+++.....   ..+++..++.++.|++.||.|||   +.+  |+||||||+||+++.++.++|+|||++..
T Consensus        89 e~~~~~~L~~~l~~~~~---~~~~~~~~~~i~~qi~~~l~~lH---~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~  162 (271)
T 3kmu_A           89 HWMPYGSLYNVLHEGTN---FVVDQSQAVKFALDMARGMAFLH---TLEPLIPRHALNSRSVMIDEDMTARISMADVKFS  162 (271)
T ss_dssp             ECCTTCBHHHHHHSCSS---CCCCHHHHHHHHHHHHHHHHHHT---TSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCT
T ss_pred             cccCCCcHHHHHhhccc---CCCCHHHHHHHHHHHHHHHHHHh---cCCCceecCCCccceEEEcCCcceeEEeccceee
Confidence            99999999999987543   25899999999999999999999   888  99999999999999999999999887755


Q ss_pred             cCCCCceeeeecccccCCcccccccccCCCC---ccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          225 IPEGETHIITRSRFGAWTYSAPEYKRGGVFN---EKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       225 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~---~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ...       ....||+.|+|||.+.+...+   .++||||||+++|||+||+.||....
T Consensus       163 ~~~-------~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~  215 (271)
T 3kmu_A          163 FQS-------PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLS  215 (271)
T ss_dssp             TSC-------TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSC
T ss_pred             ecc-------cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccC
Confidence            332       334689999999999876544   48999999999999999999997543

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=1.6e-43  Score=319.04  Aligned_cols=206  Identities=17%  Similarity=0.248  Sum_probs=163.4

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      .++|.+.+.||+|+||.||+|.+  ++..||+|.+.........+.+.+|+.++++++||||+++++++.+.+..++|||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   83 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE   83 (317)
T ss_dssp             ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred             ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence            45789999999999999999998  6889999999765443344678899999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCC-CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          148 YGEYTTLRDRIFGAPQ-PHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~-~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      |++ |+|.+++..... .....+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++....
T Consensus        84 ~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~  159 (317)
T 2pmi_A           84 FMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCH---ENKILHRDLKPQNLLINKRGQLKLGDFGLARAFG  159 (317)
T ss_dssp             CCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCSSCEETT
T ss_pred             ecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCChHHeEEcCCCCEEECcCccceecC
Confidence            999 699998865321 11125899999999999999999999   8999999999999999999999999999998765


Q ss_pred             CCCceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      .....  .....||+.|+|||.+.+. .++.++|||||||++|||+||+.||....
T Consensus       160 ~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~  213 (317)
T 2pmi_A          160 IPVNT--FSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTN  213 (317)
T ss_dssp             SCCCC--CCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             CCccc--CCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            33221  1345689999999998764 58999999999999999999999998643

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=1e-44  Score=323.29  Aligned_cols=202  Identities=20%  Similarity=0.264  Sum_probs=172.2

Q ss_pred             hcCCCcCCccccCCCceEEEEEE------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeec--CCc
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW------QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLE--TPI  141 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~  141 (338)
                      .++|++.+.||+|+||.||+|.+      ++..||+|++... .....+.+.+|+.++++++||||+++++++..  ...
T Consensus         9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   87 (295)
T 3ugc_A            9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS-TEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRN   87 (295)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCC-CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTS
T ss_pred             HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccC-CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCc
Confidence            46788899999999999999984      6889999999865 45556789999999999999999999999864  356


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCC
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSE  221 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~  221 (338)
                      .++||||+++|+|.+++.....    .+++..++.++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||+
T Consensus        88 ~~lv~e~~~~~~L~~~l~~~~~----~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~  160 (295)
T 3ugc_A           88 LKLIMEYLPYGSLRDYLQKHKE----RIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGL  160 (295)
T ss_dssp             CEEEEECCTTCBHHHHHHHCGG----GCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCCS
T ss_pred             eEEEEEeCCCCCHHHHHHhccc----ccCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHhhEEEcCCCeEEEccCcc
Confidence            8999999999999999987653    6999999999999999999999   89999999999999999999999999999


Q ss_pred             CcccCCCCce-eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          222 SISIPEGETH-IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       222 a~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      +......... .......++..|+|||.+.+..++.++||||||+++|||+||..||..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~  219 (295)
T 3ugc_A          161 TKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKS  219 (295)
T ss_dssp             CC-------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCS
T ss_pred             cccccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCC
Confidence            9876544322 122344577889999999999999999999999999999999999864

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=1.1e-43  Score=321.48  Aligned_cols=202  Identities=17%  Similarity=0.184  Sum_probs=168.7

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE-----CCeEEEEEEeCcCC---CchHHHHHHHHHHHHhccCCcceeeeeeeeecCC
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW-----QERLISVMKYNESY---SDSACKFSINNIVYAAQMDHKHILKLIGCCLETP  140 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~-----~~~~vaik~~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~  140 (338)
                      ..++|.+.+.||+|+||.||+|..     ++..||+|++....   .......+.+|+.++++++||||+++++++.+.+
T Consensus        15 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~   94 (327)
T 3a62_A           15 RPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGG   94 (327)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSS
T ss_pred             CHHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCC
Confidence            356799999999999999999987     67899999997653   2233456789999999999999999999999999


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                      ..++||||+++++|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||
T Consensus        95 ~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~Nill~~~~~~kl~Dfg  166 (327)
T 3a62_A           95 KLYLILEYLSGGELFMQLEREG-----IFMEDTACFYLAEISMALGHLH---QKGIIYRDLKPENIMLNHQGHVKLTDFG  166 (327)
T ss_dssp             CEEEEEECCTTEEHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTSCEEECCCS
T ss_pred             EEEEEEeCCCCCcHHHHHHhCC-----CCCHHHHHHHHHHHHHHHHHHH---hCCEEcccCCHHHeEECCCCcEEEEeCC
Confidence            9999999999999999997654     5899999999999999999999   8999999999999999999999999999


Q ss_pred             CCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          221 ESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ++.........  .....||+.|+|||.+.+..++.++||||||+++|+|++|+.||...
T Consensus       167 ~~~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  224 (327)
T 3a62_A          167 LCKESIHDGTV--THTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGE  224 (327)
T ss_dssp             CC------------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             cccccccCCcc--ccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCC
Confidence            98764432221  14557999999999999888999999999999999999999999754

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=1.5e-43  Score=324.93  Aligned_cols=201  Identities=19%  Similarity=0.169  Sum_probs=166.3

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ..++|.+.+.||+|+||.||++..  +++.||+|++.......  +.+.+|+.+++.++||||+++++++.+.+..++||
T Consensus        18 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~   95 (361)
T 3uc3_A           18 DSDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAID--ENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIM   95 (361)
T ss_dssp             CTTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSC--HHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CCCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcccc--HHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEE
Confidence            356799999999999999999999  78899999997653222  56789999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCc--eEEecCCCCcc
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENV--AKLFDFSESIS  224 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~--~kl~Dfg~a~~  224 (338)
                      ||+++|+|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.  +||+|||+++.
T Consensus        96 e~~~~~~L~~~l~~~~-----~~~~~~~~~i~~ql~~~L~~LH---~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~  167 (361)
T 3uc3_A           96 EYASGGELYERICNAG-----RFSEDEARFFFQQLLSGVSYCH---SMQICHRDLKLENTLLDGSPAPRLKICDFGYSKS  167 (361)
T ss_dssp             ECCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---HTTCCSCCCCGGGEEECSSSSCCEEECCCCCC--
T ss_pred             EeCCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCceEEEeecCcccc
Confidence            9999999999997654     5999999999999999999999   899999999999999987765  99999999875


Q ss_pred             cCCCCceeeeecccccCCcccccccccCCCCcc-chHHHHHHHHHHHHhCCCCcCCccC
Q 038823          225 IPEGETHIITRSRFGAWTYSAPEYKRGGVFNEK-LDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       225 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~-~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      .......   ....||+.|+|||.+.+..++.+ +|||||||++|+|++|+.||.....
T Consensus       168 ~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~  223 (361)
T 3uc3_A          168 SVLHSQP---KSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEE  223 (361)
T ss_dssp             ----------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----
T ss_pred             ccccCCC---CCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCcc
Confidence            4332221   44569999999999988877655 8999999999999999999986544

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=2.1e-43  Score=319.40  Aligned_cols=204  Identities=19%  Similarity=0.288  Sum_probs=174.1

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCc------
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPI------  141 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~------  141 (338)
                      .++|++.+.||+|+||.||+|.+  +++.||+|++.........+.+.+|+.++++++||||+++++++.+.+.      
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~   84 (332)
T 3qd2_B            5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE   84 (332)
T ss_dssp             HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred             hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence            45688999999999999999999  7899999999765555566889999999999999999999999865432      


Q ss_pred             ---------------------------------------------------ceEEEeecCCCCHHHhhhcCCCCCCCCCC
Q 038823          142 ---------------------------------------------------PILVFEYGEYTTLRDRIFGAPQPHFEPLL  170 (338)
Q Consensus       142 ---------------------------------------------------~~lv~e~~~~gsL~~~l~~~~~~~~~~l~  170 (338)
                                                                         .++||||+++++|.+++......  ...+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~--~~~~  162 (332)
T 3qd2_B           85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSL--EDRE  162 (332)
T ss_dssp             HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSG--GGSC
T ss_pred             hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCc--cchh
Confidence                                                               79999999999999999876532  2567


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCce----------eeeeccccc
Q 038823          171 LKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH----------IITRSRFGA  240 (338)
Q Consensus       171 ~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~----------~~~~~~~gt  240 (338)
                      +..++.++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++.........          .......||
T Consensus       163 ~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt  239 (332)
T 3qd2_B          163 HGVCLHIFIQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGT  239 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-C
T ss_pred             hHHHHHHHHHHHHHHHHHH---hCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCC
Confidence            7889999999999999999   899999999999999999999999999999877654221          111345699


Q ss_pred             CCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcC
Q 038823          241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRD  278 (338)
Q Consensus       241 ~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~  278 (338)
                      +.|+|||.+.+..++.++||||||+++|||++|..|+.
T Consensus       240 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~  277 (332)
T 3qd2_B          240 KLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQM  277 (332)
T ss_dssp             GGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             cCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChh
Confidence            99999999999899999999999999999999987764

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=2e-43  Score=325.33  Aligned_cols=195  Identities=18%  Similarity=0.151  Sum_probs=168.9

Q ss_pred             CCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCCC
Q 038823           76 RKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTT  153 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gs  153 (338)
                      .+.||+|+||.||+|..  ++..||+|++... .....+.+.+|+.++++++||||+++++++.+.+..++||||+++++
T Consensus        94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~  172 (373)
T 2x4f_A           94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTR-GMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGE  172 (373)
T ss_dssp             EEECC-----CEEEEEETTTCCEEEEEEEECC-SHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCE
T ss_pred             ceEEecCcCEEEEEEEEcCCCcEEEEEEEccc-ccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCc
Confidence            56799999999999998  7889999999765 33455789999999999999999999999999999999999999999


Q ss_pred             HHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceee--CCCCceEEecCCCCcccCCCCce
Q 038823          154 LRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILF--NEENVAKLFDFSESISIPEGETH  231 (338)
Q Consensus       154 L~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill--~~~~~~kl~Dfg~a~~~~~~~~~  231 (338)
                      |.+++.....    .+++..+..++.||+.||.|||   +.+|+||||||+|||+  +.++.+||+|||++.........
T Consensus       173 L~~~l~~~~~----~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~~  245 (373)
T 2x4f_A          173 LFDRIIDESY----NLTELDTILFMKQICEGIRHMH---QMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKL  245 (373)
T ss_dssp             EHHHHHHTGG----GCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCBC
T ss_pred             HHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCcccc
Confidence            9998876543    6999999999999999999999   8999999999999999  56789999999999877554332


Q ss_pred             eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          232 IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       232 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                         ....||+.|+|||++....++.++|||||||++|||+||+.||....
T Consensus       246 ---~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~  292 (373)
T 2x4f_A          246 ---KVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDN  292 (373)
T ss_dssp             ---CCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred             ---ccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCC
Confidence               34569999999999988889999999999999999999999997543

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=1.1e-43  Score=324.15  Aligned_cols=197  Identities=22%  Similarity=0.293  Sum_probs=173.6

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      .+.|...+.||+|+||.||+|..  +++.||+|++....  .....+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv  132 (348)
T 1u5q_A           53 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLV  132 (348)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hhheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEE
Confidence            34588889999999999999998  78999999997543  233456789999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||+. |+|.+++.....    .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++...
T Consensus       133 ~e~~~-g~l~~~l~~~~~----~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~  204 (348)
T 1u5q_A          133 MEYCL-GSASDLLEVHKK----PLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIM  204 (348)
T ss_dssp             EECCS-EEHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTEEEECCCTTCBSS
T ss_pred             EecCC-CCHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCCCEEEeeccCceec
Confidence            99998 788888865433    6999999999999999999999   899999999999999999999999999999776


Q ss_pred             CCCCceeeeecccccCCcccccccc---cCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKR---GGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ...      ....||+.|+|||.+.   .+.++.++|||||||++|||+||+.||...
T Consensus       205 ~~~------~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~  256 (348)
T 1u5q_A          205 APA------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM  256 (348)
T ss_dssp             SSB------CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             CCC------CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            432      3456899999999984   567899999999999999999999999754

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=3.5e-43  Score=313.94  Aligned_cols=250  Identities=18%  Similarity=0.238  Sum_probs=190.6

Q ss_pred             hhcCCCcCCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhc--cCCcceeeeeeeeec----CCcc
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQ--MDHKHILKLIGCCLE----TPIP  142 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~l~~~~~~----~~~~  142 (338)
                      ..++|.+.+.||+|+||.||+|.++++.||+|++...    ....+..|.+++..  ++||||+++++++..    ....
T Consensus         6 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~----~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~   81 (301)
T 3q4u_A            6 VARDITLLECVGKGRYGEVWRGSWQGENVAVKIFSSR----DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQL   81 (301)
T ss_dssp             CGGGCEEEEEEEECSSEEEEEEEETTEEEEEEEECGG----GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEE
T ss_pred             ccCcEEEEEeeccCCCcEEEEEEECCEEEEEEEeccc----cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCcee
Confidence            3567999999999999999999999999999998643    23455667776666  789999999998754    3458


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC-----CCCeeecCCCCCceeeCCCCceEEe
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGF-----PRPIVFGNLISLCILFNEENVAKLF  217 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~-----~~~iiH~dik~~Nill~~~~~~kl~  217 (338)
                      ++||||+++|+|.+++...      .+++..++.++.|++.||.|||...     +.+|+||||||+|||++.++.+||+
T Consensus        82 ~lv~e~~~~g~L~~~l~~~------~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~  155 (301)
T 3q4u_A           82 WLITHYHEMGSLYDYLQLT------TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIA  155 (301)
T ss_dssp             EEEECCCTTCBHHHHHTTC------CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEEC
T ss_pred             EEehhhccCCCHHHHHhhc------ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEe
Confidence            9999999999999999543      5899999999999999999999432     5799999999999999999999999


Q ss_pred             cCCCCcccCCCCceee--eecccccCCcccccccccC------CCCccchHHHHHHHHHHHHhC----------CCCcCC
Q 038823          218 DFSESISIPEGETHII--TRSRFGAWTYSAPEYKRGG------VFNEKLDVYTFSTVLLELLTG----------QSTRDL  279 (338)
Q Consensus       218 Dfg~a~~~~~~~~~~~--~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~s~Gv~l~el~tG----------~~p~~~  279 (338)
                      |||++...........  .....||+.|+|||.+.+.      .++.++||||||+++|||+||          +.||..
T Consensus       156 Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~  235 (301)
T 3q4u_A          156 DLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYD  235 (301)
T ss_dssp             CCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTT
T ss_pred             eCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccc
Confidence            9999987655433221  1344799999999999876      345799999999999999999          888865


Q ss_pred             ccCCcccccHHHHHHHHHhcCccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          280 LRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       280 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                      ......  ... ..............+....       ........+.+++.+||+.||
T Consensus       236 ~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~li~~cl~~dP  284 (301)
T 3q4u_A          236 VVPNDP--SFE-DMRKVVCVDQQRPNIPNRW-------FSDPTLTSLAKLMKECWYQNP  284 (301)
T ss_dssp             TSCSSC--CHH-HHHHHHTTSCCCCCCCGGG-------GGSHHHHHHHHHHHHHCCSSG
T ss_pred             cCCCCc--chh-hhhHHHhccCCCCCCChhh-------ccCccHHHHHHHHHHHhhcCh
Confidence            443221  111 1222222111111111111       223466788999999999987

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.2e-44  Score=323.18  Aligned_cols=199  Identities=22%  Similarity=0.266  Sum_probs=175.1

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++|.+.+.||+|+||.||+|.+  +++.||+|++....  .......+.+|+.+++.++||||+++++++.+.+..++||
T Consensus         9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~   88 (336)
T 3h4j_B            9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVI   88 (336)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            5788999999999999999998  88999999986432  1112356889999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+ +|+|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++....
T Consensus        89 E~~-~g~l~~~l~~~~-----~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~  159 (336)
T 3h4j_B           89 EYA-GGELFDYIVEKK-----RMTEDEGRRFFQQIICAIEYCH---RHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMT  159 (336)
T ss_dssp             CCC-CEEHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTT
T ss_pred             ECC-CCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCchhhEEEcCCCCEEEEEeccceecc
Confidence            999 589999887654     5999999999999999999999   8999999999999999999999999999998765


Q ss_pred             CCCceeeeecccccCCcccccccccCCC-CccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVF-NEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      .....   ....||+.|+|||.+.+..+ +.++|||||||++|+|++|+.||....
T Consensus       160 ~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~  212 (336)
T 3h4j_B          160 DGNFL---KTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEF  212 (336)
T ss_dssp             TSBTT---CCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSS
T ss_pred             CCccc---ccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCcc
Confidence            54322   44569999999999987775 789999999999999999999997543

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=4e-44  Score=324.11  Aligned_cols=243  Identities=18%  Similarity=0.250  Sum_probs=190.9

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeE----EEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERL----ISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~----vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      ++|...+.||+|+||.||+|.+  ++..    |++|.+...........+.+|+.++++++||||+++++++. ++..++
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~   91 (325)
T 3kex_A           13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQL   91 (325)
T ss_dssp             TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEEE
T ss_pred             hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccEE
Confidence            5688889999999999999998  4443    88888865543344456788999999999999999999986 456899


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ||||+++|+|.+++.....    .+++..++.++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||+++.
T Consensus        92 v~e~~~~~~L~~~l~~~~~----~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~  164 (325)
T 3kex_A           92 VTQYLPLGSLLDHVRQHRG----ALGPQLLLNWGVQIAKGMYYLE---EHGMVHRNLAARNVLLKSPSQVQVADFGVADL  164 (325)
T ss_dssp             EEECCTTCBSHHHHHSSGG----GSCTTHHHHHHHHHHHHHHHHH---HTTCCCSCCSSTTEEESSSSCEEECSCSGGGG
T ss_pred             EEEeCCCCCHHHHHHHccc----cCCHHHHHHHHHHHHHHHHHHH---hCCCCCCccchheEEECCCCeEEECCCCcccc
Confidence            9999999999999987543    6899999999999999999999   89999999999999999999999999999988


Q ss_pred             cCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccCCcccccHHHHHHHHHh-----
Q 038823          225 IPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRTHGSVRHLIEYLKNYLQ-----  298 (338)
Q Consensus       225 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~~~~~~~l~~~~~~~~~-----  298 (338)
                      ..............||..|+|||.+.+..++.++||||||+++|+|+| |+.||.....    ..+...+.....     
T Consensus       165 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~----~~~~~~~~~~~~~~~~~  240 (325)
T 3kex_A          165 LPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRL----AEVPDLLEKGERLAQPQ  240 (325)
T ss_dssp             SCCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCT----THHHHHHHTTCBCCCCT
T ss_pred             cCcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCH----HHHHHHHHcCCCCCCCC
Confidence            765544333355668889999999998999999999999999999999 9999986543    222222221110     


Q ss_pred             --cCccccccccccccCcCCcccHHHHHH
Q 038823          299 --NNRFTEIADPIIVQDLSCTETEHQFQA  325 (338)
Q Consensus       299 --~~~~~~~~d~~l~~~~~~~~~~~~~~~  325 (338)
                        ...+.+++..++..+|..|++..++..
T Consensus       241 ~~~~~~~~li~~~l~~dp~~Rps~~el~~  269 (325)
T 3kex_A          241 ICTIDVYMVMVKCWMIDENIRPTFKELAN  269 (325)
T ss_dssp             TBCTTTTHHHHHHTCSCTTTSCCHHHHHH
T ss_pred             cCcHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence              123455566666666666666554433

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=1.5e-44  Score=320.33  Aligned_cols=207  Identities=17%  Similarity=0.249  Sum_probs=177.7

Q ss_pred             HHHHhhcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcce
Q 038823           65 ELEIATNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        65 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      .+....++|.+.+.||+|+||.||+|.+ ++..||+|++......  .+.+.+|+.++.+++|+||+++++++.+.+..+
T Consensus        18 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~--~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   95 (283)
T 3gen_A           18 SWEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS--EDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIF   95 (283)
T ss_dssp             TTBCCGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSBC--HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred             CccCCHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCCC--HHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeE
Confidence            3455667899999999999999999999 7778999999865322  367899999999999999999999999999999


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      +||||+++++|.+++.....    .+++..++.++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++.
T Consensus        96 lv~e~~~~~~L~~~l~~~~~----~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~  168 (283)
T 3gen_A           96 IITEYMANGCLLNYLREMRH----RFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSR  168 (283)
T ss_dssp             EEECCCTTCBHHHHHHCGGG----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTSCEEECSTTGGG
T ss_pred             EEEeccCCCcHHHHHHHhcc----CCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCccceEEEcCCCCEEEccccccc
Confidence            99999999999999977443    6999999999999999999999   8999999999999999999999999999998


Q ss_pred             ccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      ......... .....+|+.|+|||.+.+..++.++||||||+++|+|+| |+.||....
T Consensus       169 ~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~  226 (283)
T 3gen_A          169 YVLDDEYTS-SVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFT  226 (283)
T ss_dssp             GBCCHHHHS-TTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSC
T ss_pred             ccccccccc-ccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccC
Confidence            765432211 133456788999999998899999999999999999998 999997643

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=1.9e-43  Score=311.13  Aligned_cols=198  Identities=25%  Similarity=0.363  Sum_probs=163.7

Q ss_pred             hcCCCcCCccccCCCceEEEEEECCeEEEEEEeCcCCC---chHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYS---DSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      .++|+..+.||+|+||.||+|.+.+..||+|++.....   ....+.+.+|+.+++.++||||+++++++.+.+..++||
T Consensus         6 ~~~~~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   85 (271)
T 3dtc_A            6 FAELTLEEIIGIGGFGKVYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVM   85 (271)
T ss_dssp             TTSEEEEEEEEEETTEEEEEEEETTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEE
T ss_pred             hhheeeeeeeccCCCeEEEEEEEcCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEE
Confidence            45788899999999999999999999999999875432   223567899999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC---eeecCCCCCceeeCC--------CCceE
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRP---IVFGNLISLCILFNE--------ENVAK  215 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~---iiH~dik~~Nill~~--------~~~~k  215 (338)
                      ||+++++|.+++...      .+++..++.++.|++.||.|||   +.+   |+||||||+||+++.        ++.+|
T Consensus        86 e~~~~~~L~~~~~~~------~~~~~~~~~i~~~l~~~l~~lH---~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~k  156 (271)
T 3dtc_A           86 EFARGGPLNRVLSGK------RIPPDILVNWAVQIARGMNYLH---DEAIVPIIHRDLKSSNILILQKVENGDLSNKILK  156 (271)
T ss_dssp             ECCTTEEHHHHHTSS------CCCHHHHHHHHHHHHHHHHHHH---HSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEE
T ss_pred             EcCCCCCHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHH---hCCCCceeecCCchHHEEEecccccccccCcceE
Confidence            999999999998643      6899999999999999999999   666   999999999999986        67899


Q ss_pred             EecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          216 LFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       216 l~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      |+|||++........    ....||+.|+|||.+.+..++.++||||||+++|+|+||+.||...
T Consensus       157 l~Dfg~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~  217 (271)
T 3dtc_A          157 ITDFGLAREWHRTTK----MSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGI  217 (271)
T ss_dssp             ECCCCC-----------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTS
T ss_pred             EccCCcccccccccc----cCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            999999986654322    3456899999999999889999999999999999999999999754

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=1.6e-43  Score=338.78  Aligned_cols=206  Identities=15%  Similarity=0.218  Sum_probs=180.5

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      .++|...+.||+|+||.||+|..  +++.||+|++.+..  .....+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus       184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV  263 (543)
T 3c4z_A          184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLV  263 (543)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEE
Confidence            36788889999999999999999  78999999996542  122346788999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||++||+|.+++....... ..+++..+..++.||+.||.|||   +.+|+||||||+|||++.+|.+||+|||+++..
T Consensus       264 mE~~~gg~L~~~l~~~~~~~-~~l~e~~~~~~~~qi~~aL~~LH---~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~  339 (543)
T 3c4z_A          264 MTIMNGGDIRYHIYNVDEDN-PGFQEPRAIFYTAQIVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVEL  339 (543)
T ss_dssp             ECCCTTCBHHHHHHTSSTTS-CSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEEC
T ss_pred             EEeccCCCHHHHHHHhhccc-ccccHHHHHHHHHHHHHHHHHHH---HcCCcccCCChHHEEEeCCCCEEEeecceeeec
Confidence            99999999999997653211 36999999999999999999999   899999999999999999999999999999876


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ......  .....||+.|+|||++.+..++.++|||||||++|||+||+.||....
T Consensus       340 ~~~~~~--~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~  393 (543)
T 3c4z_A          340 KAGQTK--TKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARG  393 (543)
T ss_dssp             CTTCCC--BCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTT
T ss_pred             cCCCcc--cccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCc
Confidence            554322  134579999999999999899999999999999999999999998653

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=3e-43  Score=316.52  Aligned_cols=196  Identities=17%  Similarity=0.173  Sum_probs=167.4

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++|+..+.||+|+||+||+|.+  +++.||+|++.... .......+..|+..+.++ +|+||++++++|.+++..++||
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~  136 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT  136 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence            5789999999999999999999  78999999987653 334445566677666665 8999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+. ++|.+++.....    .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++....
T Consensus       137 e~~~-~~L~~~~~~~~~----~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~  208 (311)
T 3p1a_A          137 ELCG-PSLQQHCEAWGA----SLPEAQVWGYLRDTLLALAHLH---SQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELG  208 (311)
T ss_dssp             ECCC-CBHHHHHHHHCS----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECGGGCEEECCCTTCEECC
T ss_pred             eccC-CCHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEECCCCCEEEccceeeeecc
Confidence            9995 799998877653    6999999999999999999999   8899999999999999999999999999988765


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcC
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRD  278 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~  278 (338)
                      .....   ....||+.|+|||++.+ .++.++|||||||++|||++|..|+.
T Consensus       209 ~~~~~---~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~  256 (311)
T 3p1a_A          209 TAGAG---EVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPH  256 (311)
T ss_dssp             ---------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCS
T ss_pred             cCCCC---cccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCC
Confidence            43322   44569999999998875 79999999999999999999977665

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=1.7e-43  Score=323.44  Aligned_cols=204  Identities=18%  Similarity=0.199  Sum_probs=176.0

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC----CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcce
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY----SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      .+.|.+.+.||+|+||.||+|..  +++.||+|++....    .....+.+.+|+.++++++||||+++++++.+.+..+
T Consensus        23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~  102 (351)
T 3c0i_A           23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLY  102 (351)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred             ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            45699999999999999999998  78999999986321    1223477899999999999999999999999999999


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCc---eEEecCC
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENV---AKLFDFS  220 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~---~kl~Dfg  220 (338)
                      +||||+++++|.+.+....... ..+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.   +||+|||
T Consensus       103 lv~e~~~g~~L~~~l~~~~~~~-~~~~~~~~~~i~~qi~~al~~lH---~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg  178 (351)
T 3c0i_A          103 MVFEFMDGADLCFEIVKRADAG-FVYSEAVASHYMRQILEALRYCH---DNNIIHRDVKPHCVLLASKENSAPVKLGGFG  178 (351)
T ss_dssp             EEEECCSSCBHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECSSSTTCCEEECCCT
T ss_pred             EEEeCCCCCCHHHHHHHhcccC-CCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChHHeEEecCCCCCcEEEecCc
Confidence            9999999999988876432111 25899999999999999999999   899999999999999986654   9999999


Q ss_pred             CCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          221 ESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ++.........  .....||+.|+|||.+.+..++.++|||||||++|+|+||+.||..
T Consensus       179 ~a~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~  235 (351)
T 3c0i_A          179 VAIQLGESGLV--AGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYG  235 (351)
T ss_dssp             TCEECCTTSCB--CCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCS
T ss_pred             ceeEecCCCee--ecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCC
Confidence            99877654321  1455799999999999988999999999999999999999999975

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=1.6e-44  Score=340.92  Aligned_cols=211  Identities=22%  Similarity=0.258  Sum_probs=175.9

Q ss_pred             cCHHHHHHhhcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecC
Q 038823           61 FSAKELEIATNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLET  139 (338)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~  139 (338)
                      +....|+...++|...+.||+|+||.||+|.+ .+..||+|++.....  ..+.+.+|+.++++++||||+++++++.+ 
T Consensus       174 ~~~~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-  250 (452)
T 1fmk_A          174 LAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM--SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-  250 (452)
T ss_dssp             SSTTCSBCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS--CHHHHHHHHHHHHHCCCTTBCCEEEEECS-
T ss_pred             CCccccccChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCC--CHHHHHHHHHHHHhCCCCCEeeEEEEEcC-
Confidence            34456677788899999999999999999999 567899999986532  23678999999999999999999999876 


Q ss_pred             CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecC
Q 038823          140 PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDF  219 (338)
Q Consensus       140 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Df  219 (338)
                      +..++||||+++|+|.+++.....   ..+++..++.++.|++.||.|||   +.+|+||||||+|||++.++.+||+||
T Consensus       251 ~~~~iv~e~~~~gsL~~~l~~~~~---~~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~Df  324 (452)
T 1fmk_A          251 EPIYIVTEYMSKGSLLDFLKGETG---KYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADF  324 (452)
T ss_dssp             SSCEEEECCCTTCBHHHHHSHHHH---TTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCC
T ss_pred             CceEEEehhhcCCCHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEECCCCCEEECCC
Confidence            678999999999999999975321   25899999999999999999999   899999999999999999999999999


Q ss_pred             CCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          220 SESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       220 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      |+++......... .....++..|+|||.+....++.++||||||+++|||+| |+.||....
T Consensus       325 G~a~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~  386 (452)
T 1fmk_A          325 GLARLIEDNEYTA-RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV  386 (452)
T ss_dssp             CTTC---------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC
T ss_pred             ccceecCCCceec-ccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCC
Confidence            9998765432221 134457789999999998999999999999999999999 999997643

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=9.6e-43  Score=309.26  Aligned_cols=198  Identities=23%  Similarity=0.351  Sum_probs=171.2

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchH------HHHHHHHHHHHhccCCcceeeeeeeeecCCc
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSA------CKFSINNIVYAAQMDHKHILKLIGCCLETPI  141 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~------~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~  141 (338)
                      .++|.+.+.||+|+||.||+|.+  +++.||+|.+........      .+.+.+|+.++++++||||+++++++.+.. 
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-   96 (287)
T 4f0f_A           18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP-   96 (287)
T ss_dssp             STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT-
T ss_pred             hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC-
Confidence            46788999999999999999999  788999999875432211      167899999999999999999999987654 


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--eeecCCCCCceeeCCCCc-----e
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRP--IVFGNLISLCILFNEENV-----A  214 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--iiH~dik~~Nill~~~~~-----~  214 (338)
                       ++||||+++|+|.+.+.....    .+++..++.++.|++.||.|||   +.+  |+||||||+||+++.++.     +
T Consensus        97 -~lv~e~~~~~~L~~~l~~~~~----~~~~~~~~~~~~~l~~~l~~lH---~~~~~ivH~dikp~Nil~~~~~~~~~~~~  168 (287)
T 4f0f_A           97 -RMVMEFVPCGDLYHRLLDKAH----PIKWSVKLRLMLDIALGIEYMQ---NQNPPIVHRDLRSPNIFLQSLDENAPVCA  168 (287)
T ss_dssp             -EEEEECCTTCBHHHHHHCTTS----CCCHHHHHHHHHHHHHHHHHHH---TSSSCCBCSCCSGGGEEESCCCTTCSCCE
T ss_pred             -eEEEEecCCCCHHHHHhcccC----CccHHHHHHHHHHHHHHHHHHH---hCCCCeecCCCCcceEEEeccCCCCceeE
Confidence             799999999999998877653    7999999999999999999999   888  999999999999988776     9


Q ss_pred             EEecCCCCcccCCCCceeeeecccccCCcccccccc--cCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          215 KLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKR--GGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       215 kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~--~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ||+|||++......     .....||+.|+|||.+.  ...++.++||||||+++|+|++|+.||....
T Consensus       169 kl~Dfg~~~~~~~~-----~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~  232 (287)
T 4f0f_A          169 KVADFGLSQQSVHS-----VSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYS  232 (287)
T ss_dssp             EECCCTTCBCCSSC-----EECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCC
T ss_pred             EeCCCCcccccccc-----ccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCcccc
Confidence            99999999755432     14567999999999984  4457899999999999999999999997544

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=2.7e-43  Score=321.78  Aligned_cols=200  Identities=21%  Similarity=0.221  Sum_probs=162.6

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      ...+.|.+.+.||+|+||.||+|.+  +++.||+|.+....   ..+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus        50 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv  126 (349)
T 2w4o_A           50 ALSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV---DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLV  126 (349)
T ss_dssp             CGGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC-------------CHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch---hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEE
Confidence            4567799999999999999999999  67889999997542   235678999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC---CCceEEecCCCC
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE---ENVAKLFDFSES  222 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~---~~~~kl~Dfg~a  222 (338)
                      |||+++|+|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+|||++.   ++.+||+|||++
T Consensus       127 ~e~~~~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a  198 (349)
T 2w4o_A          127 LELVTGGELFDRIVEKG-----YYSERDAADAVKQILEAVAYLH---ENGIVHRDLKPENLLYATPAPDAPLKIADFGLS  198 (349)
T ss_dssp             ECCCCSCBHHHHHTTCS-----SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESSSSTTCCEEECCCC--
T ss_pred             EEeCCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCcccEEEecCCCCCCEEEccCccc
Confidence            99999999999997654     5899999999999999999999   899999999999999975   889999999999


Q ss_pred             cccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          223 ISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       223 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      .........   ....||+.|+|||++.+..++.++|||||||++|||+||+.||....
T Consensus       199 ~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~  254 (349)
T 2w4o_A          199 KIVEHQVLM---KTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDER  254 (349)
T ss_dssp             -----------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTT
T ss_pred             cccCccccc---ccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCc
Confidence            876443221   44568999999999999899999999999999999999999997543

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=5.6e-43  Score=316.64  Aligned_cols=238  Identities=18%  Similarity=0.202  Sum_probs=170.8

Q ss_pred             CCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-CcceeeeeeeeecCCcceEEEeecCCC
Q 038823           76 RKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCLETPIPILVFEYGEYT  152 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~g  152 (338)
                      .+.||+|+||.||+|.+  +++.||+|++...    ....+.+|+.+++.+. ||||+++++++.+.+..++||||+++|
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~   91 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR----MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGG   91 (325)
T ss_dssp             SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG----GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSC
T ss_pred             CCccccCCCeEEEEEEECCCCCEEEEEEEChh----hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCC
Confidence            47899999999999999  6889999998643    3356788999999997 999999999999999999999999999


Q ss_pred             CHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC---ceEEecCCCCcccCCCC
Q 038823          153 TLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN---VAKLFDFSESISIPEGE  229 (338)
Q Consensus       153 sL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~---~~kl~Dfg~a~~~~~~~  229 (338)
                      +|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++   .+||+|||++.......
T Consensus        92 ~L~~~l~~~~-----~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~  163 (325)
T 3kn6_A           92 ELFERIKKKK-----HFSETEASYIMRKLVSAVSHMH---DVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDN  163 (325)
T ss_dssp             BHHHHHHHCS-----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC--
T ss_pred             cHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCCC
Confidence            9999998764     6999999999999999999999   89999999999999997665   89999999998765433


Q ss_pred             ceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHHHHHHHhcCccccccccc
Q 038823          230 THIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPI  309 (338)
Q Consensus       230 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~  309 (338)
                      ...  ....||+.|+|||.+.+..++.++||||||+++|+|++|+.||.............+..... ..+.... ..+ 
T Consensus       164 ~~~--~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i-~~~~~~~-~~~-  238 (325)
T 3kn6_A          164 QPL--KTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKI-KKGDFSF-EGE-  238 (325)
T ss_dssp             ----------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHH-TTTCCCC-CSH-
T ss_pred             Ccc--cccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHH-HcCCCCC-Ccc-
Confidence            221  44568999999999999999999999999999999999999998654422222233322222 2221110 000 


Q ss_pred             cccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          310 IVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       310 l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                              .......++.+++.+||+.||
T Consensus       239 --------~~~~~s~~~~~li~~~L~~dP  259 (325)
T 3kn6_A          239 --------AWKNVSQEAKDLIQGLLTVDP  259 (325)
T ss_dssp             --------HHHTSCHHHHHHHHHHHCCCT
T ss_pred             --------cccCCCHHHHHHHHHHCCCCh
Confidence                    001123468889999999988

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=2.9e-43  Score=313.58  Aligned_cols=199  Identities=15%  Similarity=0.209  Sum_probs=172.7

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      ++|.+.+.||+|+||+||+|.+  +++.||+|++.... .......+.+|+.++++++||||+++++++.+.+..++|||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   81 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence            4688899999999999999999  78899999997553 33445778899999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |+++ +|.+.+.....    .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++.....
T Consensus        82 ~~~~-~l~~~~~~~~~----~l~~~~~~~~~~ql~~~l~~lH---~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~  153 (292)
T 3o0g_A           82 FCDQ-DLKKYFDSCNG----DLDPEIVKSFLFQLLKGLGFCH---SRNVLHRDLKPQNLLINRNGELKLANFGLARAFGI  153 (292)
T ss_dssp             CCSE-EHHHHHHHTTT----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCS
T ss_pred             cCCC-CHHHHHHhCCC----CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeecccceecCC
Confidence            9994 66666655433    6999999999999999999999   89999999999999999999999999999987653


Q ss_pred             CCceeeeecccccCCcccccccccCC-CCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGV-FNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ....  .....||+.|+|||.+.+.. ++.++|||||||++|+|+||..||..
T Consensus       154 ~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~  204 (292)
T 3o0g_A          154 PVRC--YSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFP  204 (292)
T ss_dssp             CCSC--CCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCC
T ss_pred             cccc--ccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcC
Confidence            3222  14556899999999987765 89999999999999999999888643

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=1.7e-43  Score=314.53  Aligned_cols=201  Identities=17%  Similarity=0.223  Sum_probs=171.6

Q ss_pred             cCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCC-chHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYS-DSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      ++|.+.+.||+|+||.||+|.. +++.||+|++..... ....+.+.+|+.++++++||||+++++++.+.+..++||||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence            4688889999999999999999 789999999975432 22236788999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      ++ ++|.+++.....    .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++......
T Consensus        82 ~~-~~l~~~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  153 (288)
T 1ob3_A           82 LD-QDLKKLLDVCEG----GLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIP  153 (288)
T ss_dssp             CS-EEHHHHHHTSTT----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-
T ss_pred             cC-CCHHHHHHhccc----CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEeECccccccCcc
Confidence            99 599999876543    6999999999999999999999   899999999999999999999999999998776433


Q ss_pred             CceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ...  .....||+.|+|||.+.+. .++.++|||||||++|||+||+.||....
T Consensus       154 ~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~  205 (288)
T 1ob3_A          154 VRK--YTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVS  205 (288)
T ss_dssp             ----------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             ccc--cccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            221  1345689999999998764 58999999999999999999999997643

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=1.6e-43  Score=325.24  Aligned_cols=209  Identities=12%  Similarity=0.104  Sum_probs=176.9

Q ss_pred             HHHHhhcCCCcCCccccCCCceEEEEE-----E--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC---Ccceeeeee
Q 038823           65 ELEIATNNYDERKFIKQDSTYKLYKGF-----W--QERLISVMKYNESYSDSACKFSINNIVYAAQMD---HKHILKLIG  134 (338)
Q Consensus        65 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~-----~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~---h~niv~l~~  134 (338)
                      ++....++|.+.+.||+|+||.||+|.     .  +++.||+|++... .   ...+..|+.++..++   |+||+++++
T Consensus        59 ~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~-~---~~~~~~e~~~~~~l~~~~~~~iv~~~~  134 (365)
T 3e7e_A           59 EFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA-N---PWEFYIGTQLMERLKPSMQHMFMKFYS  134 (365)
T ss_dssp             EEECSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC-C---HHHHHHHHHHHHHSCGGGGGGBCCEEE
T ss_pred             eEEECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC-C---hhHHHHHHHHHHHhhhhhhhhhhhhhe
Confidence            444566789999999999999999994     3  7889999999754 2   245677777777776   999999999


Q ss_pred             eeecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC----
Q 038823          135 CCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE----  210 (338)
Q Consensus       135 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~----  210 (338)
                      ++...+..++||||+++|+|.+++..........+++..++.++.||+.||.|||   +.+|+||||||+|||++.    
T Consensus       135 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH---~~~ivHrDiKp~NIll~~~~~~  211 (365)
T 3e7e_A          135 AHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVH---DCEIIHGDIKPDNFILGNGFLE  211 (365)
T ss_dssp             EEECSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECGGGTC
T ss_pred             eeecCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeecCCCCHHHEEecccccC
Confidence            9999999999999999999999997522111136999999999999999999999   899999999999999998    


Q ss_pred             -------CCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          211 -------ENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       211 -------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                             ++.+||+|||+|+...............||+.|+|||++.+..++.++|||||||++|||+||+.||...
T Consensus       212 ~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~  288 (365)
T 3e7e_A          212 QDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKN  288 (365)
T ss_dssp             C------CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEE
T ss_pred             ccccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccC
Confidence                   8999999999997654322222235667999999999999999999999999999999999999998643

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=6.2e-44  Score=323.21  Aligned_cols=205  Identities=20%  Similarity=0.317  Sum_probs=169.9

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCe----EEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcce
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QER----LISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~----~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      .++|.+.+.||+|+||.||+|.+  ++.    +|++|.+.........+.+.+|+.++++++||||+++++++.... .+
T Consensus        14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~   92 (327)
T 3lzb_A           14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ   92 (327)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EE
T ss_pred             HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ce
Confidence            46789999999999999999998  444    357888766555556688999999999999999999999998764 78


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      +|+||+.+|+|.+++.....    .+++..++.++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++.
T Consensus        93 ~v~~~~~~g~L~~~l~~~~~----~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~  165 (327)
T 3lzb_A           93 LITQLMPFGCLLDYVREHKD----NIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAK  165 (327)
T ss_dssp             EEECCCSSCBHHHHHHHTTT----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTC--
T ss_pred             EEEEecCCCcHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHh---hCCCcCCCCCHHHEEEcCCCCEEEccCccee
Confidence            99999999999999987653    6999999999999999999999   8999999999999999999999999999998


Q ss_pred             ccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccC
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRT  282 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~  282 (338)
                      ...............+|+.|+|||.+.+..++.++||||||+++|||+| |+.||.....
T Consensus       166 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~  225 (327)
T 3lzb_A          166 LLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA  225 (327)
T ss_dssp             --------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG
T ss_pred             EccCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCH
Confidence            7755443333344557889999999999999999999999999999999 9999986443

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=3.3e-44  Score=324.16  Aligned_cols=215  Identities=16%  Similarity=0.236  Sum_probs=164.8

Q ss_pred             HHHHhhcCCCcCCccccCCCceEEEEEE--CCe---EEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeec
Q 038823           65 ELEIATNNYDERKFIKQDSTYKLYKGFW--QER---LISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLE  138 (338)
Q Consensus        65 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~---~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~  138 (338)
                      ++....++|.+.+.||+|+||.||+|.+  ++.   .||+|.+.... .....+.+.+|+.++++++||||+++++++..
T Consensus        17 ~~~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~   96 (323)
T 3qup_A           17 DVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLR   96 (323)
T ss_dssp             TTBCC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEEC
T ss_pred             hcccChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeec
Confidence            3445667899999999999999999998  332   79999987653 34556789999999999999999999999987


Q ss_pred             CCcc------eEEEeecCCCCHHHhhhcCCCC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC
Q 038823          139 TPIP------ILVFEYGEYTTLRDRIFGAPQP-HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE  211 (338)
Q Consensus       139 ~~~~------~lv~e~~~~gsL~~~l~~~~~~-~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~  211 (338)
                      .+..      ++||||+++|+|.+++...... ....+++..++.++.|++.||.|||   +.+|+||||||+||+++.+
T Consensus        97 ~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~ivH~Dikp~NIli~~~  173 (323)
T 3qup_A           97 SRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLS---SRNFIHRDLAARNCMLAED  173 (323)
T ss_dssp             C-------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTT
T ss_pred             cccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHH---cCCcccCCCCcceEEEcCC
Confidence            7655      9999999999999998643211 1125899999999999999999999   8999999999999999999


Q ss_pred             CceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccC
Q 038823          212 NVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRT  282 (338)
Q Consensus       212 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~  282 (338)
                      +.+||+|||++................+++.|+|||.+.+..++.++||||||+++|||+| |+.||.....
T Consensus       174 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~  245 (323)
T 3qup_A          174 MTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIEN  245 (323)
T ss_dssp             SCEEECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG
T ss_pred             CCEEEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccCh
Confidence            9999999999987655443333344557889999999999999999999999999999999 9999986443

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=8.3e-44  Score=320.20  Aligned_cols=218  Identities=18%  Similarity=0.292  Sum_probs=188.7

Q ss_pred             cCHHHHHHhhcCCCcCCccccCCCceEEEEEE-------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeee
Q 038823           61 FSAKELEIATNNYDERKFIKQDSTYKLYKGFW-------QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKL  132 (338)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l  132 (338)
                      +...++....++|.+.+.||+|+||.||+|.+       +++.||+|.+.........+.+.+|+.++.++ +||||+++
T Consensus        17 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~   96 (316)
T 2xir_A           17 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL   96 (316)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             ccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence            56677888889999999999999999999985       45789999998776666667899999999999 69999999


Q ss_pred             eeeeecCC-cceEEEeecCCCCHHHhhhcCCCCC-----------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecC
Q 038823          133 IGCCLETP-IPILVFEYGEYTTLRDRIFGAPQPH-----------FEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGN  200 (338)
Q Consensus       133 ~~~~~~~~-~~~lv~e~~~~gsL~~~l~~~~~~~-----------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~d  200 (338)
                      ++++...+ ..++||||+++++|.+++.......           ...+++..++.++.|++.||.|||   +.+|+|||
T Consensus        97 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~d  173 (316)
T 2xir_A           97 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRD  173 (316)
T ss_dssp             EEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHH---HTTCCCSC
T ss_pred             EEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHH---hCCccccc
Confidence            99987654 5899999999999999998754310           112889999999999999999999   89999999


Q ss_pred             CCCCceeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCC
Q 038823          201 LISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDL  279 (338)
Q Consensus       201 ik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~  279 (338)
                      |||+||+++.++.+||+|||++................||+.|+|||.+.+..++.++||||||+++|+|+| |+.||..
T Consensus       174 ikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~  253 (316)
T 2xir_A          174 LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG  253 (316)
T ss_dssp             CSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred             CccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcc
Confidence            999999999999999999999987755544433355668899999999999999999999999999999998 9999976


Q ss_pred             cc
Q 038823          280 LR  281 (338)
Q Consensus       280 ~~  281 (338)
                      ..
T Consensus       254 ~~  255 (316)
T 2xir_A          254 VK  255 (316)
T ss_dssp             CC
T ss_pred             cc
Confidence            44

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=1.1e-42  Score=310.37  Aligned_cols=249  Identities=12%  Similarity=0.060  Sum_probs=198.7

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcceEE
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv  145 (338)
                      ..++|.+.+.||+|+||.||+|..  +++.||+|++......   +.+.+|+.+++.+ +|+|++++++++.+....++|
T Consensus         8 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv   84 (298)
T 1csn_A            8 VGVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDA---PQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLV   84 (298)
T ss_dssp             ETTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTS---CCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEE
T ss_pred             cccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCcc---HHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEE
Confidence            346799999999999999999997  8999999998654322   3577899999999 799999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCc-----eEEecCC
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENV-----AKLFDFS  220 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~-----~kl~Dfg  220 (338)
                      |||+ +++|.+++.....    .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.     +||+|||
T Consensus        85 ~e~~-~~~L~~~l~~~~~----~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg  156 (298)
T 1csn_A           85 IDLL-GPSLEDLLDLCGR----KFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFG  156 (298)
T ss_dssp             EECC-CCBHHHHHHHTTT----CCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECCSSSTTTTCEEECCCT
T ss_pred             EEec-CCCHHHHHHHhcc----CCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEeccCCCCCCCeEEEEECc
Confidence            9999 8999999987653    6999999999999999999999   999999999999999987776     9999999


Q ss_pred             CCcccCCCCce-----eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHHHHH
Q 038823          221 ESISIPEGETH-----IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKN  295 (338)
Q Consensus       221 ~a~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~~~~  295 (338)
                      ++.........     .......||+.|+|||.+.+..++.++||||||+++|||+||+.||...........+......
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~  236 (298)
T 1csn_A          157 MVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEK  236 (298)
T ss_dssp             TCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHH
T ss_pred             cccccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhh
Confidence            99876554321     1124556999999999999989999999999999999999999999875542222222211111


Q ss_pred             HHh----------cCccccccccccccCcCCcccHHHHHHHHH
Q 038823          296 YLQ----------NNRFTEIADPIIVQDLSCTETEHQFQACAR  328 (338)
Q Consensus       296 ~~~----------~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~  328 (338)
                      ...          ...+.+++..++..+|..|++..++.+.++
T Consensus       237 ~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~  279 (298)
T 1csn_A          237 KQSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFS  279 (298)
T ss_dssp             HHHSCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHH
T ss_pred             ccCccHHHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHH
Confidence            111          123556666777777777777665555443

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=6.1e-44  Score=323.71  Aligned_cols=216  Identities=17%  Similarity=0.234  Sum_probs=185.5

Q ss_pred             HHHHHhhcCCCcCCccccCCCceEEEEEE--CC-----eEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeee
Q 038823           64 KELEIATNNYDERKFIKQDSTYKLYKGFW--QE-----RLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGC  135 (338)
Q Consensus        64 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~-----~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~  135 (338)
                      ++++...++|.+.+.||+|+||.||+|.+  .+     ..||+|.+.........+.+.+|+.+++++ +||||++++++
T Consensus        39 ~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~  118 (333)
T 2i1m_A           39 EKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGA  118 (333)
T ss_dssp             GGGBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             ccccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEE
Confidence            34666778899999999999999999998  23     379999998775666678899999999999 89999999999


Q ss_pred             eecCCcceEEEeecCCCCHHHhhhcCCCC---------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCce
Q 038823          136 CLETPIPILVFEYGEYTTLRDRIFGAPQP---------HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCI  206 (338)
Q Consensus       136 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~---------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Ni  206 (338)
                      +.+.+..++||||+++|+|.+++......         ....+++..++.++.|++.||.|||   +.+|+||||||+||
T Consensus       119 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~NI  195 (333)
T 2i1m_A          119 CTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLA---SKNCIHRDVAARNV  195 (333)
T ss_dssp             ECSSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGC
T ss_pred             EecCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHh---cCCcccCCcccceE
Confidence            99999999999999999999998753200         0125899999999999999999999   89999999999999


Q ss_pred             eeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccC
Q 038823          207 LFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRT  282 (338)
Q Consensus       207 ll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~  282 (338)
                      +++.++.+||+|||++................+|+.|+|||.+.+..++.++||||||+++|||+| |..||.....
T Consensus       196 l~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~  272 (333)
T 2i1m_A          196 LLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILV  272 (333)
T ss_dssp             EEEGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCS
T ss_pred             EECCCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccch
Confidence            999999999999999987654443333345567889999999998899999999999999999999 9999986443

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=4.5e-44  Score=317.90  Aligned_cols=208  Identities=20%  Similarity=0.299  Sum_probs=183.9

Q ss_pred             HHHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcc
Q 038823           65 ELEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIP  142 (338)
Q Consensus        65 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~  142 (338)
                      +++...++|.+.+.||+|+||.||+|.+  ++..||+|.+...  ....+.+.+|+.++++++||||+++++++.+.+..
T Consensus         7 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~   84 (288)
T 3kfa_A            7 KWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED--TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPF   84 (288)
T ss_dssp             TTBCCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSC--STHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSE
T ss_pred             cccccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcC--HHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCE
Confidence            4556678899999999999999999999  5889999999754  33457789999999999999999999999999999


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSES  222 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a  222 (338)
                      ++||||+++++|.+++.....   ..+++..++.++.|++.||.|||   +.+|+|+||||+||+++.++.+||+|||++
T Consensus        85 ~~v~e~~~~~~L~~~~~~~~~---~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~  158 (288)
T 3kfa_A           85 YIITEFMTYGNLLDYLRECNR---QEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS  158 (288)
T ss_dssp             EEEEECCTTEEHHHHHHHCCT---TTSCHHHHHHHHHHHHHHHHHHH---HHTCCCSCCSGGGEEECGGGCEEECCCCGG
T ss_pred             EEEEEcCCCCcHHHHHHhccc---CCccHhHHHHHHHHHHHHHHHHH---HCCccCCCCCcceEEEcCCCCEEEccCccc
Confidence            999999999999999987543   36999999999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          223 ISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       223 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      .......... .....+|+.|+|||.+.+..++.++||||||+++|+|++ |..||....
T Consensus       159 ~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~  217 (288)
T 3kfa_A          159 RLMTGDTYTA-HAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID  217 (288)
T ss_dssp             GTSCSSSSEE-ETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred             eeccCCcccc-ccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence            8776543322 245567889999999998999999999999999999999 999997643

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=6.3e-43  Score=311.01  Aligned_cols=208  Identities=24%  Similarity=0.324  Sum_probs=166.9

Q ss_pred             HHHhhcCCCcCCccccCCCceEEEEEECCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           66 LEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        66 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      .+...++|.+.+.||+|+||.||+|.+.+ .+|+|.+.... .....+.+.+|+.++++++|+||+++++++. .+..++
T Consensus        19 ~ei~~~~y~~~~~lG~G~~g~Vy~~~~~~-~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~l   96 (289)
T 3og7_A           19 WEIPDGQITVGQRIGSGSFGTVYKGKWHG-DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST-APQLAI   96 (289)
T ss_dssp             CBCCTTSCEEEEEEEECSSEEEEEEESSS-EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEE
T ss_pred             CccCccceeeeeEecCCCCeEEEEEEEcC-ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeecc-CCccEE
Confidence            34556789999999999999999998754 59999997554 4455678999999999999999999999764 556899


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ||||+++++|.+++.....    .+++..++.++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++..
T Consensus        97 v~e~~~~~~L~~~l~~~~~----~~~~~~~~~i~~qi~~~L~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~  169 (289)
T 3og7_A           97 VTQWCEGSSLYHHLHASET----KFEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATE  169 (289)
T ss_dssp             EEECCCEEEHHHHHTTC-------CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEEEECCCC----
T ss_pred             EEEecCCCcHHHHHhhccC----CCCHHHHHHHHHHHHHHHHHHH---hCCcccccCccceEEECCCCCEEEccceeccc
Confidence            9999999999999976543    6999999999999999999999   89999999999999999999999999999976


Q ss_pred             cCCCCceeeeecccccCCcccccccc---cCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          225 IPEGETHIITRSRFGAWTYSAPEYKR---GGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       225 ~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ..............||+.|+|||.+.   ...++.++||||||+++|+|++|+.||.....
T Consensus       170 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~  230 (289)
T 3og7_A          170 KSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINN  230 (289)
T ss_dssp             --------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCC
T ss_pred             cccccccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccch
Confidence            65433222224556899999999986   56688999999999999999999999976443

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=4.5e-43  Score=321.43  Aligned_cols=212  Identities=18%  Similarity=0.148  Sum_probs=185.5

Q ss_pred             CCccccCHHHHHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-----Ccc
Q 038823           56 NPYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMD-----HKH  128 (338)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-----h~n  128 (338)
                      .....++..+.....++|.+.+.||+|+||.||+|.+  ++..||+|++...  ......+..|+.+++.+.     |||
T Consensus        20 ~~~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~e~~~l~~l~~~~~~h~~   97 (360)
T 3llt_A           20 DEIVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI--KKYTRSAKIEADILKKIQNDDINNNN   97 (360)
T ss_dssp             CGGGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC--HHHHHHHHHHHHHHHHTCCCSTTGGG
T ss_pred             ccceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc--hhhhhhhHHHHHHHHHhcccCCCCCC
Confidence            3345566666777788999999999999999999999  7889999999743  344466788999999986     999


Q ss_pred             eeeeeeeeecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceee
Q 038823          129 ILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILF  208 (338)
Q Consensus       129 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill  208 (338)
                      |+++++++...+..++||||+ +++|.+++.....   ..+++..+..++.||+.||.|||   +.+|+||||||+|||+
T Consensus        98 iv~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~---~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll  170 (360)
T 3llt_A           98 IVKYHGKFMYYDHMCLIFEPL-GPSLYEIITRNNY---NGFHIEDIKLYCIEILKALNYLR---KMSLTHTDLKPENILL  170 (360)
T ss_dssp             BCCEEEEEEETTEEEEEECCC-CCBHHHHHHHTTT---CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEE
T ss_pred             eecccceeeECCeeEEEEcCC-CCCHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCcccEEE
Confidence            999999999999999999999 7999999987643   25899999999999999999999   8999999999999999


Q ss_pred             CC-------------------------CCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHH
Q 038823          209 NE-------------------------ENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTF  263 (338)
Q Consensus       209 ~~-------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~  263 (338)
                      +.                         ++.+||+|||++.......     ....||+.|+|||.+.+..++.++|||||
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~Diwsl  245 (360)
T 3llt_A          171 DDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYH-----GSIINTRQYRAPEVILNLGWDVSSDMWSF  245 (360)
T ss_dssp             SCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCC-----CSCCSCGGGCCHHHHTTCCCCTTHHHHHH
T ss_pred             ccccccccccchhcccccccccccccCCCCEEEEeccCceecCCCC-----cCccCcccccCcHHHcCCCCCCccchHHH
Confidence            75                         7889999999998754432     45568999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCcCCcc
Q 038823          264 STVLLELLTGQSTRDLLR  281 (338)
Q Consensus       264 Gv~l~el~tG~~p~~~~~  281 (338)
                      ||++|+|+||+.||....
T Consensus       246 G~il~ell~g~~pf~~~~  263 (360)
T 3llt_A          246 GCVLAELYTGSLLFRTHE  263 (360)
T ss_dssp             HHHHHHHHHSSCSCCCSS
T ss_pred             HHHHHHHHHCCCCCCCCc
Confidence            999999999999997643

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=5.1e-44  Score=328.45  Aligned_cols=204  Identities=15%  Similarity=0.141  Sum_probs=168.6

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE-C------CeEEEEEEeCcCCCchH----------HHHHHHHHHHHhccCCcceee
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW-Q------ERLISVMKYNESYSDSA----------CKFSINNIVYAAQMDHKHILK  131 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~-~------~~~vaik~~~~~~~~~~----------~~~~~~e~~~l~~l~h~niv~  131 (338)
                      ..++|.+.+.||+|+||.||+|.+ .      +..||+|.+........          ...+..|+..+..++|+||++
T Consensus        33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~  112 (364)
T 3op5_A           33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK  112 (364)
T ss_dssp             TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred             CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence            456899999999999999999998 2      46899999875531100          112345666777888999999


Q ss_pred             eeeeeecC----CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCcee
Q 038823          132 LIGCCLET----PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCIL  207 (338)
Q Consensus       132 l~~~~~~~----~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nil  207 (338)
                      +++++...    ...++||||+ +++|.+++.....    .+++..++.++.||+.||.|||   +.+|+||||||+|||
T Consensus       113 ~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~----~l~~~~~~~i~~qi~~~l~~lH---~~~iiHrDlkp~Nil  184 (364)
T 3op5_A          113 YWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAK----RFSRKTVLQLSLRILDILEYIH---EHEYVHGDIKASNLL  184 (364)
T ss_dssp             EEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTS----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEE
T ss_pred             EEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhccC----CCCHHHHHHHHHHHHHHHHHHH---HCCeEEecCCHHHEE
Confidence            99998764    4589999999 8999999987643    6999999999999999999999   899999999999999


Q ss_pred             eC--CCCceEEecCCCCcccCCCCcee-----eeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          208 FN--EENVAKLFDFSESISIPEGETHI-----ITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       208 l~--~~~~~kl~Dfg~a~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ++  .++.+||+|||+++.........     ......||+.|+|||.+.+..++.++|||||||++|||+||+.||...
T Consensus       185 l~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~  264 (364)
T 3op5_A          185 LNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDN  264 (364)
T ss_dssp             EESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGG
T ss_pred             EecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCcccc
Confidence            99  88999999999997765432211     113345999999999999989999999999999999999999999853

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=9.5e-43  Score=308.73  Aligned_cols=201  Identities=19%  Similarity=0.207  Sum_probs=179.0

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      ..++|.+.+.||+|+||.||+|.+  ++..||+|++.... .....+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus         4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v   83 (284)
T 3kk8_A            4 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV   83 (284)
T ss_dssp             TTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEE
Confidence            457899999999999999999998  68899999987543 445567788999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCc---eEEecCCCC
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENV---AKLFDFSES  222 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~---~kl~Dfg~a  222 (338)
                      |||+++++|.+.+....     .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.   +||+|||++
T Consensus        84 ~e~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~  155 (284)
T 3kk8_A           84 FDLVTGGELFEDIVARE-----FYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLA  155 (284)
T ss_dssp             ECCCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSTTCCEEECCCTTC
T ss_pred             EecCCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCcCcCCCCHHHEEEecCCCCCcEEEeeceee
Confidence            99999999999887654     5999999999999999999999   899999999999999986655   999999999


Q ss_pred             cccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          223 ISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       223 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .........   ....||+.|+|||.+.+..++.++||||||+++|+|++|+.||...
T Consensus       156 ~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~  210 (284)
T 3kk8_A          156 IEVNDSEAW---HGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE  210 (284)
T ss_dssp             EECCSSCBC---CCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             EEcccCccc---cCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCC
Confidence            876554332   4456899999999999999999999999999999999999999753

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=8e-43  Score=324.26  Aligned_cols=197  Identities=15%  Similarity=0.201  Sum_probs=163.3

Q ss_pred             cCCCcC-CccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhc-cCCcceeeeeeeeec----CCcc
Q 038823           71 NNYDER-KFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQ-MDHKHILKLIGCCLE----TPIP  142 (338)
Q Consensus        71 ~~~~~~-~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~-l~h~niv~l~~~~~~----~~~~  142 (338)
                      ++|.+. +.||+|+||.||+|.+  ++..||+|++...      ..+.+|+.++.+ .+||||+++++++..    .+..
T Consensus        61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~------~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~  134 (400)
T 1nxk_A           61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC------PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL  134 (400)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred             ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc------hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEE
Confidence            456554 6899999999999999  7889999998643      456788888754 479999999998865    5578


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC---CCceEEecC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE---ENVAKLFDF  219 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~---~~~~kl~Df  219 (338)
                      ++||||+++|+|.+++.....   ..+++..+..++.||+.||.|||   +.+|+||||||+|||++.   ++.+||+||
T Consensus       135 ~lv~E~~~gg~L~~~l~~~~~---~~l~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~~~~kl~DF  208 (400)
T 1nxk_A          135 LIVMECLDGGELFSRIQDRGD---QAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDF  208 (400)
T ss_dssp             EEEEECCCSEEHHHHHHCC------CCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSTTCCEEECCC
T ss_pred             EEEEEeCCCCcHHHHHHHhCC---CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCcceEEEecCCCCccEEEEec
Confidence            999999999999999987542   25999999999999999999999   899999999999999997   789999999


Q ss_pred             CCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          220 SESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       220 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      |+++........   ....||+.|+|||++.+..++.++|||||||++|||+||+.||.....
T Consensus       209 G~a~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~  268 (400)
T 1nxk_A          209 GFAKETTSHNSL---TTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHG  268 (400)
T ss_dssp             TTCEECC--------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTT
T ss_pred             ccccccCCCCcc---ccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCcc
Confidence            999876543221   455689999999999989999999999999999999999999986544

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=7.2e-43  Score=315.29  Aligned_cols=200  Identities=18%  Similarity=0.144  Sum_probs=178.3

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCc-----hHHHHHHHHHHHHhccCCcceeeeeeeeecCCcc
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSD-----SACKFSINNIVYAAQMDHKHILKLIGCCLETPIP  142 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~-----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~  142 (338)
                      .++|.+.+.||+|+||.||+|..  ++..||+|.+......     ...+.+.+|+.++++++||||+++++++.+.+..
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   90 (321)
T 2a2a_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDV   90 (321)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence            45688999999999999999999  7889999999754321     1357789999999999999999999999999999


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC----ceEEec
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN----VAKLFD  218 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~----~~kl~D  218 (338)
                      ++||||+++++|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++    .+||+|
T Consensus        91 ~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~aL~~lH---~~~ivH~dikp~NIl~~~~~~~~~~~kl~D  162 (321)
T 2a2a_A           91 VLILELVSGGELFDFLAQKE-----SLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLID  162 (321)
T ss_dssp             EEEECCCCSCBHHHHHHTCS-----CEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEECC
T ss_pred             EEEEEcCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCChHHEEEecCCCCcCCEEEcc
Confidence            99999999999999997653     5899999999999999999999   89999999999999999888    799999


Q ss_pred             CCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          219 FSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       219 fg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ||++.........   ....||+.|+|||.+.+..++.++||||||+++|+|+||+.||...
T Consensus       163 fg~~~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  221 (321)
T 2a2a_A          163 FGLAHEIEDGVEF---KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD  221 (321)
T ss_dssp             CTTCEECCTTCCC---CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             CccceecCccccc---cccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCC
Confidence            9999876554322   4456899999999999889999999999999999999999999753

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.5e-43  Score=328.88  Aligned_cols=205  Identities=18%  Similarity=0.237  Sum_probs=176.6

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCC--cceEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETP--IPILV  145 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~--~~~lv  145 (338)
                      .++|.+.+.||+|+||.||+|.+  +++.||+|++.........+.+.+|+.++++++||||+++++++.+.+  ..++|
T Consensus         8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv   87 (396)
T 4eut_A            8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI   87 (396)
T ss_dssp             SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred             CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEE
Confidence            45688899999999999999999  689999999986543444577889999999999999999999998655  67999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceee----CCCCceEEecCCC
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILF----NEENVAKLFDFSE  221 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill----~~~~~~kl~Dfg~  221 (338)
                      |||+++|+|.+++......  ..+++..++.++.|++.||.|||   +.+|+||||||+|||+    +.++.+||+|||+
T Consensus        88 ~e~~~~g~L~~~l~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~  162 (396)
T 4eut_A           88 MEFCPCGSLYTVLEEPSNA--YGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGA  162 (396)
T ss_dssp             ECCCTTEEHHHHTTSGGGT--TCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEECTTSCEEEEECCGGG
T ss_pred             EecCCCCCHHHHHHhhhcc--cCCCHHHHHHHHHHHHHHHHHHH---HCCEEECCcCHHHEEEeecCCCceeEEEecCCC
Confidence            9999999999999765421  14999999999999999999999   8999999999999999    7788899999999


Q ss_pred             CcccCCCCceeeeecccccCCccccccccc--------CCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          222 SISIPEGETHIITRSRFGAWTYSAPEYKRG--------GVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       222 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ++........   ....||..|+|||.+.+        ..++.++|||||||++|||+||+.||.....
T Consensus       163 a~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~  228 (396)
T 4eut_A          163 ARELEDDEQF---VSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEG  228 (396)
T ss_dssp             CEECCCGGGS---SCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTC
T ss_pred             ceEccCCCcc---ccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCc
Confidence            9876554322   34569999999999865        4578899999999999999999999975443

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=7.2e-43  Score=330.39  Aligned_cols=201  Identities=23%  Similarity=0.235  Sum_probs=177.9

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      .++|.+.+.||+|+||.||+|..  +|+.||+|++....  .......+.+|+.+++.++||||+++++++.+.+..++|
T Consensus        15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv   94 (476)
T 2y94_A           15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMV   94 (476)
T ss_dssp             ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            35788899999999999999998  78999999996532  112346788999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||+++|+|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||++...
T Consensus        95 ~E~~~gg~L~~~l~~~~-----~l~~~~~~~i~~qi~~aL~~LH---~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~  166 (476)
T 2y94_A           95 MEYVSGGELFDYICKNG-----RLDEKESRRLFQQILSGVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMM  166 (476)
T ss_dssp             EECCSSEEHHHHTTSSS-----SCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEECTTCCEEECCCSSCEEC
T ss_pred             EeCCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCCCcccccHHHEEEecCCCeEEEeccchhhc
Confidence            99999999999997654     6999999999999999999999   999999999999999999999999999999876


Q ss_pred             CCCCceeeeecccccCCcccccccccCCC-CccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVF-NEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ......   ....||+.|+|||.+.+..+ +.++|||||||++|+|++|+.||....
T Consensus       167 ~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~  220 (476)
T 2y94_A          167 SDGEFL---RTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDH  220 (476)
T ss_dssp             CTTCCB---CCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             cccccc---cccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCC
Confidence            554322   45579999999999988765 789999999999999999999998543

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=8e-43  Score=307.81  Aligned_cols=205  Identities=19%  Similarity=0.232  Sum_probs=179.8

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      .++|++.+.||+|+||.||+|.+  +++.||+|.+.........+.+.+|+.+++.++||||+++++++.+.+..++|||
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   85 (276)
T 2yex_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   85 (276)
T ss_dssp             HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEE
Confidence            35688899999999999999998  6889999999755444556788999999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |+++++|.+++....     .+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||.+.....
T Consensus        86 ~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~  157 (276)
T 2yex_A           86 YCSGGELFDRIEPDI-----GMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRY  157 (276)
T ss_dssp             CCTTEEGGGGSBTTT-----BCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEE
T ss_pred             ecCCCcHHHHHhhcc-----CCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCChHHEEEccCCCEEEeeCCCccccCC
Confidence            999999999987643     6999999999999999999999   89999999999999999999999999999986644


Q ss_pred             CCceeeeecccccCCcccccccccCCC-CccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGVF-NEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ...........||..|+|||.+.+..+ +.++||||||+++|+|+||+.||.....
T Consensus       158 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~  213 (276)
T 2yex_A          158 NNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSD  213 (276)
T ss_dssp             TTEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCT
T ss_pred             CcchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCch
Confidence            332222245678999999999987664 7899999999999999999999986443

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=3.1e-43  Score=325.99  Aligned_cols=208  Identities=14%  Similarity=0.179  Sum_probs=179.7

Q ss_pred             hhcCCCcCCccccC--CCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcce
Q 038823           69 ATNNYDERKFIKQD--STYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        69 ~~~~~~~~~~lg~G--~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      ..++|.+.+.||+|  +||.||+|.+  +++.||+|++.... .....+.+.+|+.++++++||||+++++++.+.+..+
T Consensus        23 ~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~  102 (389)
T 3gni_B           23 EGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELW  102 (389)
T ss_dssp             CGGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred             CCCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEE
Confidence            45679999999999  9999999999  78999999997553 3445677889999999999999999999999999999


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      +||||+++|+|.+++.....   ..+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||.+.
T Consensus       103 lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~  176 (389)
T 3gni_B          103 VVTSFMAYGSAKDLICTHFM---DGMNELAIAYILQGVLKALDYIH---HMGYVHRSVKASHILISVDGKVYLSGLRSNL  176 (389)
T ss_dssp             EEEECCTTCBHHHHHHHTCT---TCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCGGGCE
T ss_pred             EEEEccCCCCHHHHHhhhcc---cCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEcccccce
Confidence            99999999999999977532   25999999999999999999999   8999999999999999999999999999876


Q ss_pred             ccCCCCce-----eeeecccccCCccccccccc--CCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          224 SIPEGETH-----IITRSRFGAWTYSAPEYKRG--GVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       224 ~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ........     .......||..|+|||.+.+  ..++.++|||||||++|||++|+.||.....
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~  242 (389)
T 3gni_B          177 SMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPA  242 (389)
T ss_dssp             ECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCS
T ss_pred             eeccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCH
Confidence            54322111     11133468999999999987  5699999999999999999999999976544

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=5.3e-43  Score=319.13  Aligned_cols=202  Identities=17%  Similarity=0.243  Sum_probs=169.6

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCC--cceeeeeeeeecCCcceE
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESY-SDSACKFSINNIVYAAQMDH--KHILKLIGCCLETPIPIL  144 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h--~niv~l~~~~~~~~~~~l  144 (338)
                      ..+.|.+.+.||+|+||.||+|.. +++.||+|++.... .....+.+.+|+.+|.+++|  +||+++++++.+.+..++
T Consensus         7 ~~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l   86 (343)
T 3dbq_A            7 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM   86 (343)
T ss_dssp             SSCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             ecCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEE
Confidence            345688999999999999999998 78899999987543 44456788999999999986  999999999999999999


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ||| +.+++|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+|||++ ++.+||+|||++..
T Consensus        87 v~e-~~~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~al~~lH---~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~  156 (343)
T 3dbq_A           87 VME-CGNIDLNSWLKKKK-----SIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQ  156 (343)
T ss_dssp             EEC-CCSEEHHHHHHHSC-----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEE-TTEEEECCCSSSCC
T ss_pred             EEe-CCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCcceEEEE-CCcEEEeecccccc
Confidence            999 56689999998754     6999999999999999999999   89999999999999997 67899999999987


Q ss_pred             cCCCCceeeeecccccCCccccccccc-----------CCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          225 IPEGETHIITRSRFGAWTYSAPEYKRG-----------GVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       225 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ..............||+.|+|||++.+           ..++.++|||||||++|||++|+.||...
T Consensus       157 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  223 (343)
T 3dbq_A          157 MQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQI  223 (343)
T ss_dssp             C------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             cCcccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhh
Confidence            765443333345679999999999864           66899999999999999999999999753

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=1.6e-43  Score=328.05  Aligned_cols=201  Identities=18%  Similarity=0.246  Sum_probs=170.4

Q ss_pred             hcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccC--CcceeeeeeeeecCCcceEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESY-SDSACKFSINNIVYAAQMD--HKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~--h~niv~l~~~~~~~~~~~lv  145 (338)
                      ..+|.+.+.||+|+||.||+|.. +++.||+|++.... .....+.+.+|+.+|.+++  |+||+++++++...+..++|
T Consensus        55 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv  134 (390)
T 2zmd_A           55 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV  134 (390)
T ss_dssp             TEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred             CCceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEE
Confidence            34599999999999999999998 78899999987543 4455678999999999996  59999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      || +.+++|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++ ++.+||+|||+++..
T Consensus       135 ~E-~~~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~aL~~lH---~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~  204 (390)
T 2zmd_A          135 ME-CGNIDLNSWLKKKK-----SIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQM  204 (390)
T ss_dssp             EE-CCSEEHHHHHHHCS-----SCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC
T ss_pred             Ee-cCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHEEEE-CCeEEEEecCccccc
Confidence            99 56789999998764     5899999999999999999999   99999999999999995 589999999999877


Q ss_pred             CCCCceeeeecccccCCccccccccc-----------CCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRG-----------GVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .............||+.|+|||++.+           ..++.++|||||||++|||++|+.||...
T Consensus       205 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~  270 (390)
T 2zmd_A          205 QPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQI  270 (390)
T ss_dssp             ---------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             cCCCccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhh
Confidence            65443333345679999999999865           36899999999999999999999999753

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=2.7e-43  Score=319.81  Aligned_cols=212  Identities=19%  Similarity=0.271  Sum_probs=183.4

Q ss_pred             HHHhhcCCCcCCccccCCCceEEEEEE---------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeee
Q 038823           66 LEIATNNYDERKFIKQDSTYKLYKGFW---------QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGC  135 (338)
Q Consensus        66 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~---------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~  135 (338)
                      +....++|.+.+.||+|+||.||+|.+         ++..||+|.+.........+.+.+|+.+++++ +||||++++++
T Consensus        30 ~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~  109 (334)
T 2pvf_A           30 WEFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGA  109 (334)
T ss_dssp             TBCCGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             ccCCHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEE
Confidence            445567899999999999999999986         34679999998766666678899999999999 89999999999


Q ss_pred             eecCCcceEEEeecCCCCHHHhhhcCCCCC-----------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCC
Q 038823          136 CLETPIPILVFEYGEYTTLRDRIFGAPQPH-----------FEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISL  204 (338)
Q Consensus       136 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~-----------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~  204 (338)
                      +.+.+..++||||+++|+|.+++.......           ...+++..++.++.|++.||.|||   +.+|+||||||+
T Consensus       110 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~  186 (334)
T 2pvf_A          110 CTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAAR  186 (334)
T ss_dssp             ECSSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGG
T ss_pred             EccCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCccc
Confidence            999999999999999999999998654210           124899999999999999999999   899999999999


Q ss_pred             ceeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          205 CILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       205 Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      ||+++.++.+||+|||++................+|+.|+|||.+.+..++.++||||||+++|+|+| |+.||...
T Consensus       187 NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~  263 (334)
T 2pvf_A          187 NVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI  263 (334)
T ss_dssp             GEEECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             eEEEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcC
Confidence            99999999999999999987765544333344567889999999988889999999999999999999 99999754

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=9e-43  Score=307.89  Aligned_cols=199  Identities=18%  Similarity=0.208  Sum_probs=176.1

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ..++|.+.+.||+|+||.||+|.+  ++..+|+|++..... ...+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   85 (277)
T 3f3z_A            7 INQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFV-EDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVM   85 (277)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGC-SCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhcc-chHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEE
Confidence            345689999999999999999999  677899999876532 33477899999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceee---CCCCceEEecCCCCc
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILF---NEENVAKLFDFSESI  223 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill---~~~~~~kl~Dfg~a~  223 (338)
                      ||+++++|.+++....     .+++..+..++.|++.||.|||   +.+|+|+||||+||++   +.++.+||+|||++.
T Consensus        86 e~~~~~~L~~~~~~~~-----~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~  157 (277)
T 3f3z_A           86 ELCTGGELFERVVHKR-----VFRESDAARIMKDVLSAVAYCH---KLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAA  157 (277)
T ss_dssp             ECCCSCBHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCCTTCE
T ss_pred             eccCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEecCCCCCcEEEEecccce
Confidence            9999999999987654     5899999999999999999999   8999999999999999   788999999999998


Q ss_pred             ccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ........   ....||+.|+|||.+.+. ++.++||||||+++|+|+||+.||...
T Consensus       158 ~~~~~~~~---~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~  210 (277)
T 3f3z_A          158 RFKPGKMM---RTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAP  210 (277)
T ss_dssp             ECCTTSCB---CCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             eccCccch---hccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCC
Confidence            76544322   455699999999988654 899999999999999999999999754

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-42  Score=311.67  Aligned_cols=199  Identities=23%  Similarity=0.380  Sum_probs=166.3

Q ss_pred             hcCCCcCCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeec
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYG  149 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  149 (338)
                      .++|.+.+.||+|+||.||+|.+.++.||+|.+...   ...+.+.+|+.++++++||||+++++++.+  ..++||||+
T Consensus         7 ~~~~~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~---~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~lv~e~~   81 (307)
T 2eva_A            7 YKEIEVEEVVGRGAFGVVCKAKWRAKDVAIKQIESE---SERKAFIVELRQLSRVNHPNIVKLYGACLN--PVCLVMEYA   81 (307)
T ss_dssp             GGGEEEEEEEECCSSSEEEEEEETTEEEEEEECSST---THHHHHHHHHHHHHHCCCTTBCCEEEBCTT--TTEEEEECC
T ss_pred             HhHeeeeeEeecCCCceEEEEEECCeeEEEEEecCh---hHHHHHHHHHHHHhcCCCCCcCeEEEEEcC--CcEEEEEcC
Confidence            356888899999999999999999999999998643   344778999999999999999999999874  589999999


Q ss_pred             CCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCc-eEEecCCCCcccCCC
Q 038823          150 EYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENV-AKLFDFSESISIPEG  228 (338)
Q Consensus       150 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~-~kl~Dfg~a~~~~~~  228 (338)
                      ++|+|.+++.....  ...+++..++.++.|++.||.|||+....+|+||||||+||+++.++. +||+|||++......
T Consensus        82 ~~~~L~~~l~~~~~--~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~  159 (307)
T 2eva_A           82 EGGSLYNVLHGAEP--LPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH  159 (307)
T ss_dssp             TTCBHHHHHHCSSS--EECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC-------
T ss_pred             CCCCHHHHHhccCC--CCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccc
Confidence            99999999986542  124789999999999999999999322289999999999999998886 799999999765432


Q ss_pred             CceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .     ....||+.|+|||.+.+..++.++||||||+++|||+||+.||...
T Consensus       160 ~-----~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~  206 (307)
T 2eva_A          160 M-----TNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEI  206 (307)
T ss_dssp             ----------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTT
T ss_pred             c-----ccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhh
Confidence            2     3446899999999999989999999999999999999999999754

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.4e-42  Score=311.79  Aligned_cols=203  Identities=17%  Similarity=0.172  Sum_probs=167.8

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      .-++|.+.+.||+|+||.||+|.+  +++.||+|.+....  .....+.+.+|+.++++++||||+++++++...+..++
T Consensus        32 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~l  111 (309)
T 2h34_A           32 QFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYV  111 (309)
T ss_dssp             --CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEE
T ss_pred             EeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEE
Confidence            346899999999999999999998  78999999997543  23335778999999999999999999999999999999


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ||||+++++|.+++....     .+++..+..++.|++.||.|||   +.+|+|+||||+||+++.++.+||+|||++..
T Consensus       112 v~e~~~~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~  183 (309)
T 2h34_A          112 DMRLINGVDLAAMLRRQG-----PLAPPRAVAIVRQIGSALDAAH---AAGATHRDVKPENILVSADDFAYLVDFGIASA  183 (309)
T ss_dssp             EEECCCCEEHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSCCC---
T ss_pred             EEEecCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCcCCcCCCChHHEEEcCCCCEEEecCccCcc
Confidence            999999999999998653     5999999999999999999999   89999999999999999999999999999877


Q ss_pred             cCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          225 IPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       225 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ........ .....||+.|+|||.+.+..++.++||||||+++|+|+||+.||...
T Consensus       184 ~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  238 (309)
T 2h34_A          184 TTDEKLTQ-LGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGD  238 (309)
T ss_dssp             --------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSC
T ss_pred             cccccccc-ccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCc
Confidence            65433221 14556899999999999888999999999999999999999999753

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=1e-42  Score=309.06  Aligned_cols=202  Identities=20%  Similarity=0.159  Sum_probs=171.2

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      ++|.+.+.||+|+||.||+|..  ++..+|+|++.........+.+.+|+.++++++||||+++++++.+.+..++||||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  101 (285)
T 3is5_A           22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMET  101 (285)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEe
Confidence            5688999999999999999998  78899999997665455567889999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceee---CCCCceEEecCCCCccc
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILF---NEENVAKLFDFSESISI  225 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill---~~~~~~kl~Dfg~a~~~  225 (338)
                      +++|+|.+.+...... ...+++..+..++.|++.||.|||   +.+|+||||||+||++   +.++.+||+|||++...
T Consensus       102 ~~~~~L~~~l~~~~~~-~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~  177 (285)
T 3is5_A          102 CEGGELLERIVSAQAR-GKALSEGYVAELMKQMMNALAYFH---SQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELF  177 (285)
T ss_dssp             CSCCBHHHHHHHHHHH-TCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC-
T ss_pred             CCCCcHHHHHHhhhhc-ccCCCHHHHHHHHHHHHHHHHHHH---hCCEEECCCCHHHEEEecCCCCCCEEEEeeecceec
Confidence            9999999988643110 026999999999999999999999   8999999999999999   45678999999999876


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ......   ....||+.|+|||.+. +.++.++||||||+++|+|++|+.||...
T Consensus       178 ~~~~~~---~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~  228 (285)
T 3is5_A          178 KSDEHS---TNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGT  228 (285)
T ss_dssp             ------------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CCcccC---cCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCC
Confidence            543322   4556899999999875 56899999999999999999999999753

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=9e-43  Score=312.72  Aligned_cols=203  Identities=18%  Similarity=0.212  Sum_probs=171.1

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC----chHHHHHHHHHHHHhccC---CcceeeeeeeeecC
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS----DSACKFSINNIVYAAQMD---HKHILKLIGCCLET  139 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~----~~~~~~~~~e~~~l~~l~---h~niv~l~~~~~~~  139 (338)
                      ..++|.+.+.||+|+||+||+|.+  +++.||+|++.....    ......+.+|+.++++++   ||||+++++++...
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~   86 (308)
T 3g33_A            7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS   86 (308)
T ss_dssp             ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred             cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence            467899999999999999999997  788999999864321    111245667777776664   99999999999875


Q ss_pred             C-----cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCce
Q 038823          140 P-----IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVA  214 (338)
Q Consensus       140 ~-----~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~  214 (338)
                      .     ..++||||+. ++|.+++.....   ..+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+
T Consensus        87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~~---~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~  159 (308)
T 3g33_A           87 RTDREIKVTLVFEHVD-QDLRTYLDKAPP---PGLPAETIKDLMRQFLRGLDFLH---ANCIVHRDLKPENILVTSGGTV  159 (308)
T ss_dssp             CSSSEEEEEEEEECCC-CBHHHHHHTCCT---TCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCTTTEEECTTSCE
T ss_pred             CCCCceeEEEEehhhh-cCHHHHHhhccC---CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCE
Confidence            5     4799999998 699999987653   24999999999999999999999   8999999999999999999999


Q ss_pred             EEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          215 KLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       215 kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ||+|||++.........   ....||+.|+|||.+.+..++.++|||||||++|+|++|+.||....
T Consensus       160 kl~Dfg~a~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~  223 (308)
T 3g33_A          160 KLADFGLARIYSYQMAL---TPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNS  223 (308)
T ss_dssp             EECSCSCTTTSTTCCCS---GGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSS
T ss_pred             EEeeCccccccCCCccc---CCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            99999999876543322   45678999999999999999999999999999999999999997643

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=4.5e-43  Score=309.97  Aligned_cols=203  Identities=16%  Similarity=0.217  Sum_probs=158.1

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      .++|.+.+.||+|+||.||+|..  +++.||+|.+....  .....+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus        10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   89 (278)
T 3cok_A           10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV   89 (278)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence            35688999999999999999998  78899999986432  112246788999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||+++++|.+++.....    .+++..+..++.|++.||.|||   +.+|+|+||||+||+++.++.+||+|||++...
T Consensus        90 ~e~~~~~~L~~~l~~~~~----~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~  162 (278)
T 3cok_A           90 LEMCHNGEMNRYLKNRVK----PFSENEARHFMHQIITGMLYLH---SHGILHRDLTLSNLLLTRNMNIKIADFGLATQL  162 (278)
T ss_dssp             EECCTTEEHHHHHHTCSS----CCCHHHHHHHHHHHHHHHHHHH---HTTEECSSCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             EecCCCCcHHHHHhhccC----CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEEeecceeec
Confidence            999999999999987543    6999999999999999999999   899999999999999999999999999999876


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ......  .....||+.|+|||.+.+..++.++||||||+++|+|+||+.||....
T Consensus       163 ~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  216 (278)
T 3cok_A          163 KMPHEK--HYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDT  216 (278)
T ss_dssp             C------------------------------CTHHHHHHHHHHHHHHSSCSSCCCS
T ss_pred             cCCCCc--ceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChh
Confidence            533221  134568999999999998889999999999999999999999997643

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=9.4e-44  Score=312.26  Aligned_cols=203  Identities=18%  Similarity=0.259  Sum_probs=178.3

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ...++|.+.+.||+|+||.||+|.+ ++..||+|.+......  .+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus         5 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~--~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   82 (267)
T 3t9t_A            5 IDPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS--EEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVT   82 (267)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTBC--HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             EchhheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCCC--HHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEE
Confidence            3456788899999999999999999 7889999999865322  367899999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++++|.+++.....    .+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||++....
T Consensus        83 e~~~~~~L~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~  155 (267)
T 3t9t_A           83 EFMEHGCLSDYLRTQRG----LFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVL  155 (267)
T ss_dssp             CCCTTCBHHHHHHHTTT----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBC
T ss_pred             eCCCCCcHHHHHhhCcc----cCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEECCCCCEEEcccccccccc
Confidence            99999999999987543    6899999999999999999999   8999999999999999999999999999998764


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      ..... ......++..|+|||.+.+..++.++||||||+++|+|+| |+.||...
T Consensus       156 ~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~  209 (267)
T 3t9t_A          156 DDQYT-SSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR  209 (267)
T ss_dssp             CHHHH-STTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             ccccc-ccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCC
Confidence            43211 1134456788999999998889999999999999999999 89999753

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=1.5e-43  Score=324.79  Aligned_cols=199  Identities=16%  Similarity=0.184  Sum_probs=177.9

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      .++|.+.+.||+|+||.||+|.+  ++..||+|.+.........+.+.+|+.++++++||||+++++++.+.+..++|||
T Consensus        32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  111 (360)
T 3eqc_A           32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME  111 (360)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEE
Confidence            45788999999999999999999  6889999999876566666789999999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPR-PIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~-~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      |+++++|.+++....     .+++..+..++.|++.||.|||   .. +|+||||||+||+++.++.+||+|||++....
T Consensus       112 ~~~~~~L~~~l~~~~-----~~~~~~~~~i~~~i~~~l~~lh---~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  183 (360)
T 3eqc_A          112 HMDGGSLDQVLKKAG-----RIPEQILGKVSIAVIKGLTYLR---EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLI  183 (360)
T ss_dssp             CCTTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---HHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHH
T ss_pred             CCCCCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HhCCEEcCCccHHHEEECCCCCEEEEECCCCcccc
Confidence            999999999997754     5899999999999999999999   75 89999999999999999999999999987553


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ...    .....||+.|+|||.+.+..++.++||||||+++|+|+||+.||...
T Consensus       184 ~~~----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  233 (360)
T 3eqc_A          184 DSM----ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPP  233 (360)
T ss_dssp             HHC--------CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCC
T ss_pred             ccc----ccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            221    14457899999999999999999999999999999999999999753

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=3.9e-43  Score=342.66  Aligned_cols=197  Identities=17%  Similarity=0.270  Sum_probs=167.6

Q ss_pred             ccccCCCceEEEEEE----CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCCCC
Q 038823           78 FIKQDSTYKLYKGFW----QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTT  153 (338)
Q Consensus        78 ~lg~G~~g~Vy~~~~----~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gs  153 (338)
                      .||+|+||.||+|.+    ++..||||++.........+.+.+|+.+|++++||||++++++|.. +..++||||+++|+
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~~g~  421 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGP  421 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCTTCB
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCCCCc
Confidence            699999999999987    3557999999876555566889999999999999999999999976 56899999999999


Q ss_pred             HHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCcee-
Q 038823          154 LRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHI-  232 (338)
Q Consensus       154 L~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~-  232 (338)
                      |.+++.....    .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+++......... 
T Consensus       422 L~~~l~~~~~----~l~~~~~~~i~~qi~~~L~~LH---~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~  494 (613)
T 2ozo_A          422 LHKFLVGKRE----EIPVSNVAELLHQVSMGMKYLE---EKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYT  494 (613)
T ss_dssp             HHHHHTTCTT----TSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC-------
T ss_pred             HHHHHhhccC----CCCHHHHHHHHHHHHHHHHHHH---HCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceee
Confidence            9999976543    6999999999999999999999   8999999999999999999999999999998765433221 


Q ss_pred             eeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccC
Q 038823          233 ITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRT  282 (338)
Q Consensus       233 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~  282 (338)
                      ......+++.|+|||++.+..++.++|||||||++|||+| |+.||.....
T Consensus       495 ~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~  545 (613)
T 2ozo_A          495 ARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG  545 (613)
T ss_dssp             -------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCS
T ss_pred             eccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCH
Confidence            1123345689999999998999999999999999999998 9999986544

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.8e-43  Score=324.35  Aligned_cols=204  Identities=20%  Similarity=0.252  Sum_probs=164.5

Q ss_pred             CCCcCCccccCCCceEEEEEE--C-C--eEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeec-CCcceEE
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--Q-E--RLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLE-TPIPILV  145 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~-~--~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~-~~~~~lv  145 (338)
                      .|...+.||+|+||.||+|.+  + +  ..||+|.+.........+.+.+|+.++++++||||+++++++.+ .+..++|
T Consensus        90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv  169 (373)
T 3c1x_A           90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV  169 (373)
T ss_dssp             EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEE
T ss_pred             eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEE
Confidence            355667899999999999997  2 2  35899998766566667889999999999999999999998754 5678999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||+++|+|.+++.....    .+++..++.++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||+++..
T Consensus       170 ~e~~~~g~L~~~l~~~~~----~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~  242 (373)
T 3c1x_A          170 LPYMKHGDLRNFIRNETH----NPTVKDLIGFGLQVAKGMKFLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDM  242 (373)
T ss_dssp             EECCTTCBHHHHHHCTTC----CCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC------
T ss_pred             EECCCCCCHHHHHhhccc----CCCHHHHHHHHHHHHHHHHHHH---HCCEecCccchheEEECCCCCEEEeeccccccc
Confidence            999999999999987653    6899999999999999999999   899999999999999999999999999999866


Q ss_pred             CCCCce--eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccC
Q 038823          226 PEGETH--IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRT  282 (338)
Q Consensus       226 ~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~  282 (338)
                      ......  .......+|+.|+|||.+.+..++.++||||||+++|||+| |.+||.....
T Consensus       243 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~  302 (373)
T 3c1x_A          243 YDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNT  302 (373)
T ss_dssp             ---------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCS
T ss_pred             cccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCH
Confidence            443221  11134457789999999999999999999999999999999 7788875443

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4.4e-43  Score=318.42  Aligned_cols=204  Identities=22%  Similarity=0.259  Sum_probs=170.5

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--C----CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcce
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--Q----ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~----~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      .++|...+.||+|+||.||+|.+  +    +..||+|.+...........+.+|+.++++++||||+++++++.+.+..+
T Consensus        43 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  122 (333)
T 1mqb_A           43 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMM  122 (333)
T ss_dssp             TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred             hHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcE
Confidence            45666778999999999999987  2    23599999987656666678999999999999999999999999999999


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      +||||+++|+|.+++.....    .+++..++.++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++.
T Consensus       123 lv~e~~~~~~L~~~l~~~~~----~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~  195 (333)
T 1mqb_A          123 IITEYMENGALDKFLREKDG----EFSVLQLVGMLRGIAAGMKYLA---NMNYVHRDLAARNILVNSNLVCKVSDFGLSR  195 (333)
T ss_dssp             EEEECCTTEEHHHHHHHTTT----CSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCCCC--
T ss_pred             EEEeCCCCCcHHHHHHhCCC----CCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChheEEECCCCcEEECCCCcch
Confidence            99999999999999987543    6999999999999999999999   8999999999999999999999999999998


Q ss_pred             ccCCCCce-eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          224 SIPEGETH-IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       224 ~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      ........ .......+|..|+|||.+.+..++.++||||||+++|||+| |+.||...
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~  254 (333)
T 1mqb_A          196 VLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWEL  254 (333)
T ss_dssp             ---------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             hhccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccC
Confidence            76543221 11133346788999999998899999999999999999999 99999754

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6.2e-43  Score=310.67  Aligned_cols=205  Identities=17%  Similarity=0.261  Sum_probs=177.5

Q ss_pred             hcCCCcCC-ccccCCCceEEEEEE----CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           70 TNNYDERK-FIKQDSTYKLYKGFW----QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        70 ~~~~~~~~-~lg~G~~g~Vy~~~~----~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      .++|.+.. .||+|+||.||+|.+    ++..||+|.+.........+.+.+|+.++++++||||+++++++ ..+..++
T Consensus         8 ~~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~l   86 (287)
T 1u59_A            8 RDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALML   86 (287)
T ss_dssp             GGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEE
T ss_pred             HHHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEE
Confidence            44566665 899999999999986    57789999998775666678899999999999999999999999 4567899


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ||||+++++|.+++.....    .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++..
T Consensus        87 v~e~~~~~~L~~~l~~~~~----~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~  159 (287)
T 1u59_A           87 VMEMAGGGPLHKFLVGKRE----EIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLAARNVLLVNRHYAKISDFGLSKA  159 (287)
T ss_dssp             EEECCTTEEHHHHHTTCTT----TSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred             EEEeCCCCCHHHHHHhCCc----cCCHHHHHHHHHHHHHHHHHHH---HCCEeeCCCchheEEEcCCCCEEECcccceee
Confidence            9999999999999976543    6999999999999999999999   89999999999999999999999999999987


Q ss_pred             cCCCCcee-eeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccC
Q 038823          225 IPEGETHI-ITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRT  282 (338)
Q Consensus       225 ~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~  282 (338)
                      ........ ......+|+.|+|||.+.+..++.++||||||+++|+|+| |+.||.....
T Consensus       160 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~  219 (287)
T 1u59_A          160 LGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG  219 (287)
T ss_dssp             CTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCT
T ss_pred             eccCcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCH
Confidence            75443321 1233456889999999988889999999999999999999 9999976443

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=3.2e-43  Score=325.86  Aligned_cols=204  Identities=21%  Similarity=0.287  Sum_probs=166.1

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccC-CcceeeeeeeeecCC--c
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMD-HKHILKLIGCCLETP--I  141 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~--~  141 (338)
                      ...++|.+.+.||+|+||.||+|.+  +++.||+|++.... .....+.+.+|+.++.++. ||||+++++++...+  .
T Consensus         6 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~   85 (388)
T 3oz6_A            6 HVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRD   85 (388)
T ss_dssp             HHHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSC
T ss_pred             cccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCE
Confidence            3456899999999999999999998  78999999987553 4455677889999999997 999999999997544  6


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCC
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSE  221 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~  221 (338)
                      .++||||++ ++|.+++...      .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||+
T Consensus        86 ~~lv~e~~~-~~L~~~~~~~------~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~  155 (388)
T 3oz6_A           86 VYLVFDYME-TDLHAVIRAN------ILEPVHKQYVVYQLIKVIKYLH---SGGLLHRDMKPSNILLNAECHVKVADFGL  155 (388)
T ss_dssp             EEEEEECCS-EEHHHHHHHT------CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred             EEEEecccC-cCHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHeEEcCCCCEEecCCcc
Confidence            899999999 6999999763      5899999999999999999999   89999999999999999999999999999


Q ss_pred             CcccCCCC-------------------ceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          222 SISIPEGE-------------------THIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       222 a~~~~~~~-------------------~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      |+......                   .........||+.|+|||++.+ ..++.++|||||||++|||++|++||....
T Consensus       156 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~  235 (388)
T 3oz6_A          156 SRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSS  235 (388)
T ss_dssp             CEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             cccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            98653311                   0111244579999999999876 569999999999999999999999998643

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=2.6e-43  Score=316.48  Aligned_cols=202  Identities=19%  Similarity=0.229  Sum_probs=172.1

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC-chHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS-DSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      ++|.+.+.||+|+||.||+|.+  +++.||+|++..... ....+.+.+|+.++++++||||+++++++.+.+..++|||
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (311)
T 4agu_A            3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE   82 (311)
T ss_dssp             CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence            5688899999999999999999  689999999876543 3345678899999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |+++++|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++.....
T Consensus        83 ~~~~~~l~~~~~~~~-----~~~~~~~~~i~~~l~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  154 (311)
T 4agu_A           83 YCDHTVLHELDRYQR-----GVPEHLVKSITWQTLQAVNFCH---KHNCIHRDVKPENILITKHSVIKLCDFGFARLLTG  154 (311)
T ss_dssp             CCSEEHHHHHHHTSS-----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECC-
T ss_pred             eCCCchHHHHHhhhc-----CCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccC
Confidence            999999998887653     5999999999999999999999   89999999999999999999999999999987654


Q ss_pred             CCceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      .....  ....||..|+|||.+.+ ..++.++||||||+++|+|+||+.||.....
T Consensus       155 ~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~  208 (311)
T 4agu_A          155 PSDYY--DDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSD  208 (311)
T ss_dssp             -------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             ccccc--CCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCH
Confidence            32221  34568999999999876 5689999999999999999999999976443

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=3.4e-43  Score=311.35  Aligned_cols=206  Identities=21%  Similarity=0.250  Sum_probs=175.1

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE-----CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcc
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW-----QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIP  142 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~-----~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~  142 (338)
                      ...++|.+.+.||+|+||.||+|.+     .+..||+|.+.........+.+.+|+.++++++||||+++++++.+ +..
T Consensus         9 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~   87 (281)
T 3cc6_A            9 IAREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPT   87 (281)
T ss_dssp             CCGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSC
T ss_pred             ecccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCC
Confidence            3457799999999999999999997     2235999999876555667889999999999999999999999875 457


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSES  222 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a  222 (338)
                      ++||||+++++|.+++.....    .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++
T Consensus        88 ~~v~e~~~~~~L~~~l~~~~~----~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~  160 (281)
T 3cc6_A           88 WIIMELYPYGELGHYLERNKN----SLKVLTLVLYSLQICKAMAYLE---SINCVHRDIAVRNILVASPECVKLGDFGLS  160 (281)
T ss_dssp             EEEEECCTTCBHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEEETTEEEECCCCGG
T ss_pred             EEEEecCCCCCHHHHHHhccc----cCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCccceEEECCCCcEEeCccCCC
Confidence            899999999999999976543    6899999999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccC
Q 038823          223 ISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRT  282 (338)
Q Consensus       223 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~  282 (338)
                      .......... .....+|+.|+|||.+.+..++.++||||||+++|+|+| |+.||.....
T Consensus       161 ~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~  220 (281)
T 3cc6_A          161 RYIEDEDYYK-ASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLEN  220 (281)
T ss_dssp             GCC----------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCG
T ss_pred             cccccccccc-cccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCCh
Confidence            8765433221 134457889999999988899999999999999999998 9999975433

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=2.9e-42  Score=308.64  Aligned_cols=201  Identities=18%  Similarity=0.263  Sum_probs=180.2

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ..+.|...+.||+|+||.||+|..  +++.||+|.+.........+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus        20 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   99 (303)
T 3a7i_A           20 PEELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIM   99 (303)
T ss_dssp             GGGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hHHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEE
Confidence            345688899999999999999998  788999999976655556688999999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++++|.+++...      .+++..+..++.|++.||.|||   +.+|+|+||||+||+++.++.+||+|||++....
T Consensus       100 e~~~~~~L~~~~~~~------~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~  170 (303)
T 3a7i_A          100 EYLGGGSALDLLEPG------PLDETQIATILREILKGLDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLT  170 (303)
T ss_dssp             ECCTTEEHHHHHTTS------CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECB
T ss_pred             EeCCCCcHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChheEEECCCCCEEEeecccceecC
Confidence            999999999998653      6899999999999999999999   8999999999999999999999999999998765


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .....  .....||+.|+|||.+.+..++.++||||||+++|+|++|+.||...
T Consensus       171 ~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  222 (303)
T 3a7i_A          171 DTQIK--RNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSEL  222 (303)
T ss_dssp             TTBCC--BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             ccccc--cCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCc
Confidence            43321  14556899999999999989999999999999999999999999754

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=5.2e-42  Score=305.10  Aligned_cols=197  Identities=18%  Similarity=0.190  Sum_probs=171.2

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeec----CCcceE
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLE----TPIPIL  144 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~~l  144 (338)
                      .|.+.+.||+|+||.||+|.+  ++..||+|.+.... .....+.+.+|+.++++++||||+++++++..    ....++
T Consensus        27 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l  106 (290)
T 1t4h_A           27 FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL  106 (290)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred             eEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEE
Confidence            366677899999999999999  77889999987543 45556788999999999999999999998864    355899


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--eeecCCCCCceeeC-CCCceEEecCCC
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRP--IVFGNLISLCILFN-EENVAKLFDFSE  221 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--iiH~dik~~Nill~-~~~~~kl~Dfg~  221 (338)
                      ||||+++++|.+++....     .+++..+..++.|++.||.|||   +.+  |+|+||||+||+++ .++.+||+|||+
T Consensus       107 v~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH---~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~  178 (290)
T 1t4h_A          107 VTELMTSGTLKTYLKRFK-----VMKIKVLRSWCRQILKGLQFLH---TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGL  178 (290)
T ss_dssp             EEECCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---TSSSCCCCSCCCGGGEEESSTTSCEEECCTTG
T ss_pred             EEEecCCCCHHHHHHHcc-----CCCHHHHHHHHHHHHHHHHHHH---cCCCCEEECCCCHHHEEEECCCCCEEEeeCCC
Confidence            999999999999997653     5899999999999999999999   888  99999999999997 789999999999


Q ss_pred             CcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          222 SISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       222 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      +........    ....||+.|+|||.+. +.++.++||||||+++|+|+||+.||....
T Consensus       179 ~~~~~~~~~----~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~pf~~~~  233 (290)
T 1t4h_A          179 ATLKRASFA----KAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQ  233 (290)
T ss_dssp             GGGCCTTSB----EESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTCS
T ss_pred             ccccccccc----ccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCCCCCcC
Confidence            976554432    3456899999999876 459999999999999999999999997543

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=7.7e-42  Score=310.07  Aligned_cols=251  Identities=18%  Similarity=0.240  Sum_probs=189.8

Q ss_pred             HHHHhhcCCCcCCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc--CCcceeeeeeeeecC---
Q 038823           65 ELEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQM--DHKHILKLIGCCLET---  139 (338)
Q Consensus        65 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l--~h~niv~l~~~~~~~---  139 (338)
                      .-....++|.+.+.||+|+||.||+|.+++..||+|++...    ....+..|.+++..+  +||||+++++++...   
T Consensus        31 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~----~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~  106 (337)
T 3mdy_A           31 VQRTIAKQIQMVKQIGKGRYGEVWMGKWRGEKVAVKVFFTT----EEASWFRETEIYQTVLMRHENILGFIAADIKGTGS  106 (337)
T ss_dssp             HHTTHHHHCEEEEEEEEETTEEEEEEEETTEEEEEEEEEGG----GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGG
T ss_pred             cccccccceEEEeEeecCCCeEEEEEEECCceEEEEEEecc----ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCC
Confidence            33455678999999999999999999999999999998643    223445566666554  899999999999876   


Q ss_pred             -CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC--------CeeecCCCCCceeeCC
Q 038823          140 -PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPR--------PIVFGNLISLCILFNE  210 (338)
Q Consensus       140 -~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~--------~iiH~dik~~Nill~~  210 (338)
                       ...++||||+++|+|.+++...      .+++..++.++.|++.||.|||   ..        +|+||||||+|||++.
T Consensus       107 ~~~~~lv~e~~~~g~L~~~l~~~------~~~~~~~~~i~~~i~~~l~~lH---~~~~~~~~~~~ivH~Dikp~Nill~~  177 (337)
T 3mdy_A          107 WTQLYLITDYHENGSLYDYLKST------TLDAKSMLKLAYSSVSGLCHLH---TEIFSTQGKPAIAHRDLKSKNILVKK  177 (337)
T ss_dssp             GCEEEEEECCCTTCBHHHHHHHC------CBCHHHHHHHHHHHHHHHHHHH---SCBCSTTCBCCEECSCCCGGGEEECT
T ss_pred             CCceEEEEeccCCCcHHHHhhcc------CCCHHHHHHHHHHHHHHHHHHH---HhhhhhccCCCEEecccchHHEEECC
Confidence             6789999999999999999764      5899999999999999999999   77        9999999999999999


Q ss_pred             CCceEEecCCCCcccCCCCcee--eeecccccCCcccccccccCCCCcc------chHHHHHHHHHHHHhC---------
Q 038823          211 ENVAKLFDFSESISIPEGETHI--ITRSRFGAWTYSAPEYKRGGVFNEK------LDVYTFSTVLLELLTG---------  273 (338)
Q Consensus       211 ~~~~kl~Dfg~a~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~------~Dv~s~Gv~l~el~tG---------  273 (338)
                      ++.+||+|||++..........  ......||+.|+|||.+.+...+.+      +|||||||++|||+||         
T Consensus       178 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~  257 (337)
T 3mdy_A          178 NGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEE  257 (337)
T ss_dssp             TSCEEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCC
T ss_pred             CCCEEEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCccccccc
Confidence            9999999999997765433221  1134579999999999987766655      9999999999999999         


Q ss_pred             -CCCcCCccCCcccccHHHHHHHHHhcCccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          274 -QSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       274 -~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                       +.||.........   ................+....       ....+..++.+++.+||+.||
T Consensus       258 ~~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~li~~~l~~dP  313 (337)
T 3mdy_A          258 YQLPYHDLVPSDPS---YEDMREIVCIKKLRPSFPNRW-------SSDECLRQMGKLMTECWAHNP  313 (337)
T ss_dssp             CCCTTTTTSCSSCC---HHHHHHHHTTSCCCCCCCGGG-------GGSHHHHHHHHHHHHHSCSSG
T ss_pred             ccccHhhhcCCCCc---hhhhHHHHhhhccCccccccc-------hhhHHHHHHHHHHHHhhhhCh
Confidence             6676644332211   111222222222222222111       122566778899999999887

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=5.1e-43  Score=311.26  Aligned_cols=195  Identities=20%  Similarity=0.261  Sum_probs=171.0

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CC-------eEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCC
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QE-------RLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETP  140 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~-------~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~  140 (338)
                      .++|.+.+.||+|+||.||+|.+  ++       ..||+|.+... .....+.+.+|+.++++++||||+++++++.+.+
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   85 (289)
T 4fvq_A            7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKA-HRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGD   85 (289)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGG-GGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTT
T ss_pred             hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccc-cHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCC
Confidence            45788899999999999999998  33       57999998765 3445578999999999999999999999999999


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCc-------
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENV-------  213 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~-------  213 (338)
                      ..++||||+++|+|.+++.....    .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.       
T Consensus        86 ~~~lv~e~~~~~~L~~~l~~~~~----~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~  158 (289)
T 4fvq_A           86 ENILVQEFVKFGSLDTYLKKNKN----CINILWKLEVAKQLAAAMHFLE---ENTLIHGNVCAKNILLIREEDRKTGNPP  158 (289)
T ss_dssp             CCEEEEECCTTCBHHHHHHHTGG----GCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEEECCBGGGTBCC
T ss_pred             CCEEEEECCCCCCHHHHHHhCCC----CCCHHHHHHHHHHHHHHHHHHh---hCCeECCCcCcceEEEecCCcccccccc
Confidence            99999999999999999987643    5999999999999999999999   899999999999999998887       


Q ss_pred             -eEEecCCCCcccCCCCceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCC-CcC
Q 038823          214 -AKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQS-TRD  278 (338)
Q Consensus       214 -~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~-p~~  278 (338)
                       +||+|||++......      ....||..|+|||.+.+ ..++.++||||||+++|||+||.. ||.
T Consensus       159 ~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~  220 (289)
T 4fvq_A          159 FIKLSDPGISITVLPK------DILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLS  220 (289)
T ss_dssp             EEEECCCCSCTTTSCH------HHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTT
T ss_pred             eeeeccCcccccccCc------cccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCcc
Confidence             999999998765432      33458899999999987 669999999999999999999654 444

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.6e-43  Score=318.49  Aligned_cols=200  Identities=17%  Similarity=0.198  Sum_probs=176.4

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC-------chHHHHHHHHHHHHhccCCcceeeeeeeeecC
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS-------DSACKFSINNIVYAAQMDHKHILKLIGCCLET  139 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~-------~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~  139 (338)
                      ..++|.+.+.||+|+||.||+|.+  ++..||+|.+.....       ......+.+|+.++++++||||+++++++.+.
T Consensus        22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~  101 (335)
T 3dls_A           22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ  101 (335)
T ss_dssp             HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred             cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence            456799999999999999999998  889999999976531       11234577899999999999999999999999


Q ss_pred             CcceEEEeecCCC-CHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEec
Q 038823          140 PIPILVFEYGEYT-TLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFD  218 (338)
Q Consensus       140 ~~~~lv~e~~~~g-sL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~D  218 (338)
                      +..++||||+.+| +|.+++....     .+++..+..++.|++.||.|||   ..+|+||||||+|||++.++.+||+|
T Consensus       102 ~~~~lv~e~~~~g~~l~~~~~~~~-----~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~D  173 (335)
T 3dls_A          102 GFFQLVMEKHGSGLDLFAFIDRHP-----RLDEPLASYIFRQLVSAVGYLR---LKDIIHRDIKDENIVIAEDFTIKLID  173 (335)
T ss_dssp             SEEEEEEECCTTSCBHHHHHHTCC-----CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECC
T ss_pred             CEEEEEEEeCCCCccHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---hCCeEEeccCHHHEEEcCCCcEEEee
Confidence            9999999999777 9999998764     5999999999999999999999   89999999999999999999999999


Q ss_pred             CCCCcccCCCCceeeeecccccCCcccccccccCCC-CccchHHHHHHHHHHHHhCCCCcCC
Q 038823          219 FSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVF-NEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       219 fg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ||++.........   ....||+.|+|||.+.+..+ +.++||||||+++|+|++|+.||..
T Consensus       174 fg~a~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~  232 (335)
T 3dls_A          174 FGSAAYLERGKLF---YTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCE  232 (335)
T ss_dssp             CTTCEECCTTCCB---CEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSS
T ss_pred             cccceECCCCCce---eccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhh
Confidence            9999877654332   34568999999999988776 8899999999999999999999975

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=1.3e-43  Score=313.56  Aligned_cols=207  Identities=19%  Similarity=0.268  Sum_probs=178.9

Q ss_pred             HHHHHhhcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcc
Q 038823           64 KELEIATNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIP  142 (338)
Q Consensus        64 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~  142 (338)
                      ++|+...++|.+.+.||+|+||.||+|.. ++..||+|.+.....  ..+.+.+|+.++++++||||+++++++.+ +..
T Consensus         6 ~~~~v~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~   82 (279)
T 1qpc_A            6 DEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM--SPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPI   82 (279)
T ss_dssp             CTTBCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS--CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSC
T ss_pred             hhcccCHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcc--cHHHHHHHHHHHHhCCCcCcceEEEEEcC-CCc
Confidence            35666778899999999999999999999 677899999976532  24678999999999999999999999874 568


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSES  222 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a  222 (338)
                      ++||||+++++|.+++.....   ..+++..++.++.|++.||.|||   +.+|+|+||||+||+++.++.+||+|||++
T Consensus        83 ~~v~e~~~~~~L~~~l~~~~~---~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~  156 (279)
T 1qpc_A           83 YIITEYMENGSLVDFLKTPSG---IKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLA  156 (279)
T ss_dssp             EEEEECCTTCBHHHHTTSHHH---HTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTC
T ss_pred             EEEEecCCCCCHHHHHhcCCC---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHhhEEEcCCCCEEECCCccc
Confidence            999999999999999975421   15899999999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          223 ISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       223 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      .......... .....++..|+|||.+.+..++.++||||||+++|||+| |+.||...
T Consensus       157 ~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~  214 (279)
T 1qpc_A          157 RLIEDNEYTA-REGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGM  214 (279)
T ss_dssp             EECSSSCEEC-CTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTC
T ss_pred             ccccCccccc-ccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCccc
Confidence            8776543221 134457889999999988889999999999999999999 99999754

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.5e-43  Score=320.32  Aligned_cols=201  Identities=17%  Similarity=0.240  Sum_probs=167.2

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      ++|.+.+.||+|+||.||+|..  ++..||+|++...........+.+|+.++++++||||+++++++.+.+..++||||
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY   81 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence            4688899999999999999999  78899999997553332223456899999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      ++ |+|.+++.....    .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++......
T Consensus        82 ~~-~~l~~~~~~~~~----~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~  153 (324)
T 3mtl_A           82 LD-KDLKQYLDDCGN----IINMHNVKLFLFQLLRGLAYCH---RQKVLHRDLKPQNLLINERGELKLADFGLARAKSIP  153 (324)
T ss_dssp             CS-EEHHHHHHHTTT----CCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCCGGGEEECTTCCEEECSSSEEECC---
T ss_pred             cc-cCHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHH---HCCccCCCcCHHHEEECCCCCEEEccCcccccccCC
Confidence            99 699999887653    6999999999999999999999   899999999999999999999999999998765433


Q ss_pred             CceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ...  .....||+.|+|||.+.+ ..++.++|||||||++|+|+||+.||....
T Consensus       154 ~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~  205 (324)
T 3mtl_A          154 TKT--YDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGST  205 (324)
T ss_dssp             -----------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             ccc--cccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            221  134568999999999876 568999999999999999999999998643

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=3.1e-42  Score=326.01  Aligned_cols=198  Identities=17%  Similarity=0.197  Sum_probs=168.0

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCC------
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETP------  140 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~------  140 (338)
                      .++|.+.+.||+|+||.||+|.+  +++.||+|++.... .....+.+.+|+.+|+.++||||+++++++....      
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  140 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ  140 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence            46799999999999999999998  78999999997543 3445678899999999999999999999997654      


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                      ..++||||++ ++|.+.+..       .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||
T Consensus       141 ~~~lv~E~~~-~~l~~~~~~-------~l~~~~~~~~~~qil~aL~~lH---~~~iiHrDlkp~NIll~~~~~~kl~DFG  209 (464)
T 3ttj_A          141 DVYLVMELMD-ANLCQVIQM-------ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFG  209 (464)
T ss_dssp             EEEEEEECCS-EEHHHHHTS-------CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCC
T ss_pred             eEEEEEeCCC-CCHHHHHhh-------cCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChHhEEEeCCCCEEEEEEE
Confidence            4699999999 467777743       4889999999999999999999   8999999999999999999999999999


Q ss_pred             CCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          221 ESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      +++........   ....||+.|+|||++.+..++.++|||||||++|||++|+.||....
T Consensus       210 ~a~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~  267 (464)
T 3ttj_A          210 LARTAGTSFMM---TPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRD  267 (464)
T ss_dssp             CC-----CCCC-------CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             eeeecCCCccc---CCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            99876543221   45679999999999999999999999999999999999999997643

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=8.7e-43  Score=317.56  Aligned_cols=213  Identities=18%  Similarity=0.124  Sum_probs=174.1

Q ss_pred             HHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC----CchHHHHHHHHHHHHhccCCcceeeeeeeeecC
Q 038823           66 LEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY----SDSACKFSINNIVYAAQMDHKHILKLIGCCLET  139 (338)
Q Consensus        66 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~  139 (338)
                      +....++|.+.+.||+|+||.||+|..  ++..||+|.+....    .....+.+.+|+.++++++||||+++++++.+.
T Consensus        21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~  100 (345)
T 3hko_A           21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDE  100 (345)
T ss_dssp             HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccC
Confidence            455667799999999999999999998  78899999986431    334557899999999999999999999999999


Q ss_pred             CcceEEEeecCCCCHHHhhhcCCCC-----------------------------------CCCCCCHHHHHHHHHHHHHH
Q 038823          140 PIPILVFEYGEYTTLRDRIFGAPQP-----------------------------------HFEPLLLKHRLKVAMGIAHA  184 (338)
Q Consensus       140 ~~~~lv~e~~~~gsL~~~l~~~~~~-----------------------------------~~~~l~~~~~~~i~~~i~~~  184 (338)
                      +..++||||+++|+|.+++......                                   ....+++..+..++.|++.|
T Consensus       101 ~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~  180 (345)
T 3hko_A          101 QYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSA  180 (345)
T ss_dssp             SEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHH
Confidence            9999999999999999998521000                                   00124677888999999999


Q ss_pred             HHHhhcCCCCCeeecCCCCCceeeCCCC--ceEEecCCCCcccCCCCc--eeeeecccccCCccccccccc--CCCCccc
Q 038823          185 LAYLHVGFPRPIVFGNLISLCILFNEEN--VAKLFDFSESISIPEGET--HIITRSRFGAWTYSAPEYKRG--GVFNEKL  258 (338)
Q Consensus       185 l~~LH~~~~~~iiH~dik~~Nill~~~~--~~kl~Dfg~a~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~--~~~~~~~  258 (338)
                      |.|||   +.+|+||||||+||+++.++  .+||+|||++........  ........||+.|+|||.+.+  ..++.++
T Consensus       181 l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~  257 (345)
T 3hko_A          181 LHYLH---NQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKC  257 (345)
T ss_dssp             HHHHH---HTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHH
T ss_pred             HHHHH---HCCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHH
Confidence            99999   89999999999999998776  899999999986543211  111245679999999999865  6789999


Q ss_pred             hHHHHHHHHHHHHhCCCCcCCcc
Q 038823          259 DVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       259 Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ||||||+++|||++|+.||....
T Consensus       258 DiwslG~il~el~~g~~pf~~~~  280 (345)
T 3hko_A          258 DAWSAGVLLHLLLMGAVPFPGVN  280 (345)
T ss_dssp             HHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCC
Confidence            99999999999999999997543

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=5.2e-43  Score=317.58  Aligned_cols=202  Identities=20%  Similarity=0.286  Sum_probs=171.5

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC-chHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS-DSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      .++|.+.+.||+|+||.||+|.+  ++..||+|++..... ....+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  103 (331)
T 4aaa_A           24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVF  103 (331)
T ss_dssp             GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEE
Confidence            35688889999999999999999  688999999865533 334566889999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++++|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++....
T Consensus       104 e~~~~~~l~~~~~~~~-----~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  175 (331)
T 4aaa_A          104 EFVDHTILDDLELFPN-----GLDYQVVQKYLFQIINGIGFCH---SHNIIHRDIKPENILVSQSGVVKLCDFGFARTLA  175 (331)
T ss_dssp             ECCSEEHHHHHHHSTT-----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCTTC----
T ss_pred             ecCCcchHHHHHhhcc-----CCCHHHHHHHHHHHHHHHHHHH---HCCEEccCcChheEEEcCCCcEEEEeCCCceeec
Confidence            9999999988876554     5999999999999999999999   8999999999999999999999999999997665


Q ss_pred             CCCceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      .....  .....||..|+|||.+.+. .++.++||||||+++|+|+||+.||....
T Consensus       176 ~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  229 (331)
T 4aaa_A          176 APGEV--YDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDS  229 (331)
T ss_dssp             ----------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             CCccc--cCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            43221  1445689999999998775 68999999999999999999999998644

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=1.6e-43  Score=316.38  Aligned_cols=202  Identities=21%  Similarity=0.226  Sum_probs=174.2

Q ss_pred             cCCCcCCccccCCCceEEEEEE------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecC--Ccc
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW------QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLET--PIP  142 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~  142 (338)
                      +.|+..+.||+|+||.||+|.+      +++.||+|++.........+.+.+|+.++++++||||+++++++.+.  +..
T Consensus        21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~  100 (302)
T 4e5w_A           21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI  100 (302)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred             hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence            4578889999999999999983      78899999998665555567899999999999999999999999876  668


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSES  222 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a  222 (338)
                      ++||||+++++|.+++.....    .+++..++.++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++
T Consensus       101 ~lv~e~~~~~~L~~~l~~~~~----~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~  173 (302)
T 4e5w_A          101 KLIMEFLPSGSLKEYLPKNKN----KINLKQQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLT  173 (302)
T ss_dssp             EEEEECCTTCBHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTC
T ss_pred             EEEEEeCCCCcHHHHHHhccc----cCCHHHHHHHHHHHHHHHHHhh---cCCcccCCCchheEEEcCCCCEEECccccc
Confidence            999999999999999966543    6999999999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCCce-eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          223 ISIPEGETH-IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       223 ~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ......... .......||..|+|||.+.+..++.++||||||+++|+|+||..|+..
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~  231 (302)
T 4e5w_A          174 KAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSS  231 (302)
T ss_dssp             EECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGS
T ss_pred             ccccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcc
Confidence            877654332 222455688889999999988899999999999999999999998753

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=8.9e-43  Score=308.33  Aligned_cols=200  Identities=17%  Similarity=0.280  Sum_probs=173.6

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      ..++|.+.+.||+|+||.||+|.+  ++..||+|.+....  .......+.+|+.++++++||||+++++++.+.+..++
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   86 (279)
T 3fdn_A            7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL   86 (279)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred             ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEE
Confidence            346789999999999999999998  67789999986432  11224668899999999999999999999999999999


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ||||+++++|.+++....     .+++..+..++.|++.||.|||   +.+|+|+||||+||+++.++.+||+|||++..
T Consensus        87 v~e~~~~~~l~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~LH---~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~  158 (279)
T 3fdn_A           87 ILEYAPLGTVYRELQKLS-----KFDEQRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVH  158 (279)
T ss_dssp             EECCCTTEEHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---TTTCEECCCCGGGEEECTTSCEEECSCCEESC
T ss_pred             EEecCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---hCCEecccCChHhEEEcCCCCEEEEecccccc
Confidence            999999999999997654     5999999999999999999999   99999999999999999999999999998865


Q ss_pred             cCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          225 IPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       225 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ......    ....||+.|+|||.+.+..++.++||||||+++|+|++|+.||...
T Consensus       159 ~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  210 (279)
T 3fdn_A          159 APSSRR----TDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEAN  210 (279)
T ss_dssp             C------------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             CCcccc----cccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCC
Confidence            544322    4456899999999999989999999999999999999999999753

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=1.4e-42  Score=341.81  Aligned_cols=203  Identities=19%  Similarity=0.199  Sum_probs=178.3

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcc
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIP  142 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~  142 (338)
                      ...++|.+.+.||+|+||.||+|..  +++.||+|++.+..  .....+.+..|..++..+ +|+||+++++++.+.+.+
T Consensus       338 ~~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~  417 (674)
T 3pfq_A          338 MKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRL  417 (674)
T ss_dssp             --CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEE
T ss_pred             ccccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEE
Confidence            3456899999999999999999999  77889999997532  223346788999999988 699999999999999999


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSES  222 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a  222 (338)
                      |+||||+++|+|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||++
T Consensus       418 ~lV~E~~~gg~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH---~~gIiHrDLKp~NILl~~~g~ikL~DFGla  489 (674)
T 3pfq_A          418 YFVMEYVNGGDLMYHIQQVG-----RFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMC  489 (674)
T ss_dssp             EEEEECCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---HTSEECCCCCSTTEEECSSSCEEECCCTTC
T ss_pred             EEEEeCcCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---hCCeEeccCChhhEEEcCCCcEEEeeccee
Confidence            99999999999999998754     5999999999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          223 ISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       223 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      +........  .....||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus       490 ~~~~~~~~~--~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~  545 (674)
T 3pfq_A          490 KENIWDGVT--TKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE  545 (674)
T ss_dssp             EECCCTTCC--BCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             eccccCCcc--cccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCC
Confidence            864333221  25567999999999999999999999999999999999999999854

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=1.3e-42  Score=310.08  Aligned_cols=205  Identities=20%  Similarity=0.249  Sum_probs=173.5

Q ss_pred             hcCCCcCCccccCCCceEEEEEE-----CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeee-cCCcce
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW-----QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCL-ETPIPI  143 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~-----~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~-~~~~~~  143 (338)
                      ...|.+.+.||+|+||.||+|.+     ....+|+|.+.........+.+.+|+.++++++||||+++++++. ..+..+
T Consensus        24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~  103 (298)
T 3f66_A           24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL  103 (298)
T ss_dssp             GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred             ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceE
Confidence            34578889999999999999997     223589999987656666788999999999999999999999865 456789


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      +||||+++|+|.+++.....    .+++..++.++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++.
T Consensus       104 ~v~e~~~~~~L~~~l~~~~~----~~~~~~~~~i~~ql~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~  176 (298)
T 3f66_A          104 VVLPYMKHGDLRNFIRNETH----NPTVKDLIGFGLQVAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLAR  176 (298)
T ss_dssp             EEEECCTTCBHHHHHHCTTC----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECSCGGGC
T ss_pred             EEEeCCCCCCHHHHHHhccc----CCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEECCCCCEEECcccccc
Confidence            99999999999999977543    6899999999999999999999   8999999999999999999999999999998


Q ss_pred             ccCCCCce--eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          224 SIPEGETH--IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       224 ~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      ........  .......+|+.|+|||.+.+..++.++||||||+++|+|++ |.+||....
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~  237 (298)
T 3f66_A          177 DMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVN  237 (298)
T ss_dssp             CCSCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSC
T ss_pred             cccccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCC
Confidence            76543321  11244567889999999999999999999999999999999 666666543

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=2e-42  Score=311.12  Aligned_cols=215  Identities=18%  Similarity=0.258  Sum_probs=168.1

Q ss_pred             HHHHhhcCCCcCCccccCCCceEEEEEE-----CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeec
Q 038823           65 ELEIATNNYDERKFIKQDSTYKLYKGFW-----QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLE  138 (338)
Q Consensus        65 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-----~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~  138 (338)
                      ++....++|.+.+.||+|+||.||+|.+     ++..||+|.+.... .....+.+.+|+.++++++||||+++++++.+
T Consensus        28 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~  107 (313)
T 3brb_A           28 DVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIE  107 (313)
T ss_dssp             TTBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC
T ss_pred             hcccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEee
Confidence            3445667788899999999999999987     23479999987553 34456779999999999999999999999987


Q ss_pred             CC-----cceEEEeecCCCCHHHhhhcCCC-CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC
Q 038823          139 TP-----IPILVFEYGEYTTLRDRIFGAPQ-PHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN  212 (338)
Q Consensus       139 ~~-----~~~lv~e~~~~gsL~~~l~~~~~-~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~  212 (338)
                      .+     ..++||||+++++|.+++..... .....+++..++.++.|++.||.|||   +.+|+||||||+||+++.++
T Consensus       108 ~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~  184 (313)
T 3brb_A          108 MSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLS---NRNFLHRDLAARNCMLRDDM  184 (313)
T ss_dssp             -------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCSGGGEEECTTS
T ss_pred             ccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCC
Confidence            55     35999999999999999853211 11136999999999999999999999   99999999999999999999


Q ss_pred             ceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccC
Q 038823          213 VAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRT  282 (338)
Q Consensus       213 ~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~  282 (338)
                      .+||+|||++................+++.|+|||.+.+..++.++||||||+++|+|+| |..||.....
T Consensus       185 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~  255 (313)
T 3brb_A          185 TVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQN  255 (313)
T ss_dssp             CEEECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG
T ss_pred             cEEEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCH
Confidence            999999999987655433333244567889999999999999999999999999999999 8999976443

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=3.1e-42  Score=305.23  Aligned_cols=199  Identities=17%  Similarity=0.160  Sum_probs=173.7

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC-----chHHHHHHHHHHHHhccCCcceeeeeeeeecCCcce
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS-----DSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~-----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      ++|.+.+.||+|+||.||+|..  +++.||+|.+.....     ....+.+.+|+.++++++||||+++++++.+.+..+
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV   84 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence            5688899999999999999999  688999999875421     123578899999999999999999999999999999


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC----ceEEecC
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN----VAKLFDF  219 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~----~~kl~Df  219 (338)
                      +||||+++++|.+++....     .+++..+..++.|++.||.|||   +.+++|+||||+||+++.++    .+||+||
T Consensus        85 lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~~~~kl~df  156 (283)
T 3bhy_A           85 LILELVSGGELFDFLAEKE-----SLTEDEATQFLKQILDGVHYLH---SKRIAHFDLKPENIMLLDKNVPNPRIKLIDF  156 (283)
T ss_dssp             EEEECCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSSSSCCEEECCC
T ss_pred             EEEeecCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChHHEEEecCCCCCCceEEEec
Confidence            9999999999999997643     6999999999999999999999   89999999999999998877    7999999


Q ss_pred             CCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          220 SESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       220 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      |++.........   ....||+.|+|||.+.+..++.++||||||+++|+|++|+.||...
T Consensus       157 g~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  214 (283)
T 3bhy_A          157 GIAHKIEAGNEF---KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGE  214 (283)
T ss_dssp             TTCEECC-----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             ccceeccCCCcc---cccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCc
Confidence            999876543322   3456899999999999889999999999999999999999999754

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=8.4e-44  Score=342.56  Aligned_cols=211  Identities=22%  Similarity=0.258  Sum_probs=181.0

Q ss_pred             cCHHHHHHhhcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecC
Q 038823           61 FSAKELEIATNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLET  139 (338)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~  139 (338)
                      +....|+...++|.+.+.||+|+||.||+|.+ .+..||||++.....  ..+.+.+|+.+|++++|+||+++++++.+ 
T Consensus       257 ~~~~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~-  333 (535)
T 2h8h_A          257 LAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM--SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-  333 (535)
T ss_dssp             SSTTCSBCCGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS--CHHHHHHHHHHHHHCCCTTBCCEEEEECS-
T ss_pred             cCccceecchhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCC--CHHHHHHHHHHHHhCCCCCEeeEEEEEee-
Confidence            34556777788899999999999999999999 567899999986532  23678999999999999999999999876 


Q ss_pred             CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecC
Q 038823          140 PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDF  219 (338)
Q Consensus       140 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Df  219 (338)
                      +..++||||+++|+|.+++.....   ..+++..++.++.||+.||.|||   +.+|+||||||+|||++.++.+||+||
T Consensus       334 ~~~~lv~e~~~~gsL~~~l~~~~~---~~l~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DF  407 (535)
T 2h8h_A          334 EPIYIVTEYMSKGSLLDFLKGETG---KYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADF  407 (535)
T ss_dssp             SSCEEEECCCTTEEHHHHHSHHHH---TTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCT
T ss_pred             ccceEeeehhcCCcHHHHHhhcCC---CCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEEcCCCcEEEccc
Confidence            678999999999999999975321   25899999999999999999999   899999999999999999999999999


Q ss_pred             CCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          220 SESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       220 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      |+++........ ......++..|+|||.+....++.++|||||||++|||+| |+.||....
T Consensus       408 G~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~  469 (535)
T 2h8h_A          408 GLARLIEDNEYT-ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV  469 (535)
T ss_dssp             TSTTTCCCHHHH-TTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCC
T ss_pred             ccceecCCCcee-cccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence            999876542211 1133456788999999998999999999999999999999 999997543

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2e-42  Score=308.68  Aligned_cols=200  Identities=19%  Similarity=0.199  Sum_probs=171.5

Q ss_pred             CCCcCCccccCCCceEEEEEE--CC---eEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcc-eEE
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QE---RLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIP-ILV  145 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~---~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~-~lv  145 (338)
                      .|...+.||+|+||.||+|.+  ++   ..+|+|.+.........+.+.+|+.++++++||||+++++++.+.+.. ++|
T Consensus        22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v  101 (298)
T 3pls_A           22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVL  101 (298)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred             EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEE
Confidence            355568899999999999997  22   369999998765666678899999999999999999999999876654 999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||+.+|+|.+++.....    .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++...
T Consensus       102 ~e~~~~~~L~~~~~~~~~----~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~  174 (298)
T 3pls_A          102 LPYMCHGDLLQFIRSPQR----NPTVKDLISFGLQVARGMEYLA---EQKFVHRDLAARNCMLDESFTVKVADFGLARDI  174 (298)
T ss_dssp             ECCCTTCBHHHHHHCTTC----CCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECCTTSSCTT
T ss_pred             EecccCCCHHHHHhcccc----CCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCcEEeCcCCCcccc
Confidence            999999999999987543    6899999999999999999999   899999999999999999999999999999866


Q ss_pred             CCCCce--eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcC
Q 038823          226 PEGETH--IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRD  278 (338)
Q Consensus       226 ~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~  278 (338)
                      ......  .......+|..|+|||.+.+..++.++||||||+++|+|+||..|+.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~  229 (298)
T 3pls_A          175 LDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPY  229 (298)
T ss_dssp             TTGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTT
T ss_pred             cCCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCC
Confidence            443211  11244567889999999999899999999999999999999555543

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4.1e-43  Score=321.31  Aligned_cols=204  Identities=18%  Similarity=0.187  Sum_probs=174.4

Q ss_pred             hcCCCcCCccccCCCceEEEEEE-----CCeEEEEEEeCcCC---CchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCC
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW-----QERLISVMKYNESY---SDSACKFSINNIVYAAQM-DHKHILKLIGCCLETP  140 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~-----~~~~vaik~~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~  140 (338)
                      .++|.+.+.||+|+||.||+|..     +++.||+|++....   .....+.+.+|+.+++++ +|+||+++++++...+
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~  132 (355)
T 1vzo_A           53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET  132 (355)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred             ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence            36799999999999999999998     67899999987532   112235567899999999 6999999999999999


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                      ..++||||+++|+|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||
T Consensus       133 ~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~DfG  204 (355)
T 1vzo_A          133 KLHLILDYINGGELFTHLSQRE-----RFTEHEVQIYVGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFG  204 (355)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEESCSS
T ss_pred             eEEEEeecCCCCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCcEEEeeCC
Confidence            9999999999999999997654     5899999999999999999999   8999999999999999999999999999


Q ss_pred             CCcccCCCCceeeeecccccCCcccccccccC--CCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          221 ESISIPEGETHIITRSRFGAWTYSAPEYKRGG--VFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      +++......... .....||+.|+|||++.+.  .++.++|||||||++|||+||+.||.....
T Consensus       205 ~a~~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~  267 (355)
T 1vzo_A          205 LSKEFVADETER-AYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGE  267 (355)
T ss_dssp             EEEECCGGGGGG-GCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTS
T ss_pred             CCeecccCCCCc-ccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCc
Confidence            998654332221 1345799999999999853  478999999999999999999999975443

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=6.3e-42  Score=307.40  Aligned_cols=205  Identities=19%  Similarity=0.175  Sum_probs=165.8

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      .++|.+.+.||+|+||.||+|..  ++..||+|++....  .......+.+|+.++++++||||+++++++.+.+..++|
T Consensus        31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv  110 (310)
T 2wqm_A           31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV  110 (310)
T ss_dssp             GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEE
Confidence            45789999999999999999998  78999999997532  344567789999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||+++++|.+++...... ...+++..++.++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||++...
T Consensus       111 ~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~  186 (310)
T 2wqm_A          111 LELADAGDLSRMIKHFKKQ-KRLIPERTVWKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFF  186 (310)
T ss_dssp             EECCCSCBHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCC------
T ss_pred             EecCCCCCHHHHHHHhccc-ccCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCcHHHEEEcCCCCEEEEeccceeee
Confidence            9999999999998642110 026899999999999999999999   899999999999999999999999999998766


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ......  .....|+..|+|||.+.+..++.++||||||+++|+|++|+.||...
T Consensus       187 ~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  239 (310)
T 2wqm_A          187 SSKTTA--AHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGD  239 (310)
T ss_dssp             --------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC--
T ss_pred             cCCCcc--ccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCccc
Confidence            543221  13456899999999999889999999999999999999999999753

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=3.8e-42  Score=305.03  Aligned_cols=198  Identities=18%  Similarity=0.249  Sum_probs=176.2

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++|.+.+.||+|+||.||+|..  ++..||+|.+....  .......+.+|+.++++++||||+++++++.+.+..++||
T Consensus        14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   93 (284)
T 2vgo_A           14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLML   93 (284)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEE
Confidence            5788899999999999999999  68899999986432  1122467889999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++++|.+++....     .+++..+..++.|++.||.|||   +.+|+|+||||+||+++.++.+||+|||++....
T Consensus        94 e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~  165 (284)
T 2vgo_A           94 EFAPRGELYKELQKHG-----RFDEQRSATFMEELADALHYCH---ERKVIHRDIKPENLLMGYKGELKIADFGWSVHAP  165 (284)
T ss_dssp             CCCTTEEHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTCCEEECCCTTCEECS
T ss_pred             EeCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEEcCCCCEEEecccccccCc
Confidence            9999999999997654     5899999999999999999999   9999999999999999999999999999987655


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ....    ....|+..|+|||.+.+..++.++||||||+++|+|++|+.||...
T Consensus       166 ~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  215 (284)
T 2vgo_A          166 SLRR----RTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSP  215 (284)
T ss_dssp             SSCB----CCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             cccc----ccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCC
Confidence            4322    4456899999999999988999999999999999999999999753

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=6.4e-43  Score=316.36  Aligned_cols=210  Identities=18%  Similarity=0.211  Sum_probs=176.0

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE-------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCC
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW-------QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETP  140 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~-------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~  140 (338)
                      ...++|.+.+.||+|+||.||+|.+       ++..||+|.+...........+.+|+.++++++||||+++++++.+.+
T Consensus        27 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~  106 (327)
T 2yfx_A           27 VPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL  106 (327)
T ss_dssp             CCGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             CChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCC
Confidence            3457899999999999999999984       566899999986656666778999999999999999999999999999


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCC--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC---CCceE
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQP--HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE---ENVAK  215 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~--~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~---~~~~k  215 (338)
                      ..++||||+++++|.+++......  ....+++..++.++.|++.||.|||   +.+|+||||||+||+++.   +..+|
T Consensus       107 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~i~H~dlkp~NIli~~~~~~~~~k  183 (327)
T 2yfx_A          107 PRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAK  183 (327)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEE
T ss_pred             CcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHh---hCCeecCcCCHhHEEEecCCCcceEE
Confidence            999999999999999999865421  1125899999999999999999999   899999999999999984   44699


Q ss_pred             EecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          216 LFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       216 l~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      |+|||++................||+.|+|||.+.+..++.++||||||+++|+|+| |+.||...
T Consensus       184 l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~  249 (327)
T 2yfx_A          184 IGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSK  249 (327)
T ss_dssp             ECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             ECccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCc
Confidence            999999876544333222245567899999999998899999999999999999998 99999754

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=2.9e-42  Score=322.40  Aligned_cols=202  Identities=19%  Similarity=0.208  Sum_probs=165.1

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-------CchHHHHHHHHHHHHhccCCcceeeeeeeeec
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-------SDSACKFSINNIVYAAQMDHKHILKLIGCCLE  138 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-------~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~  138 (338)
                      ...++|.+.+.||+|+||.||+|..  ++..||+|++....       .......+.+|+.+|++++||||+++++++..
T Consensus       132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~  211 (419)
T 3i6u_A          132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA  211 (419)
T ss_dssp             HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES
T ss_pred             hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec
Confidence            4567899999999999999999998  78899999986532       11122357899999999999999999999864


Q ss_pred             CCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC---CceE
Q 038823          139 TPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE---NVAK  215 (338)
Q Consensus       139 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~---~~~k  215 (338)
                       +..++||||+++|+|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+|||++.+   +.+|
T Consensus       212 -~~~~lv~e~~~~g~L~~~l~~~~-----~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~~~~k  282 (419)
T 3i6u_A          212 -EDYYIVLELMEGGELFDKVVGNK-----RLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIK  282 (419)
T ss_dssp             -SEEEEEEECCTTCBGGGGTSSSC-----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSSSCCEE
T ss_pred             -CceEEEEEcCCCCcHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCCCcceEE
Confidence             45799999999999999987654     6999999999999999999999   8999999999999999754   4599


Q ss_pred             EecCCCCcccCCCCceeeeecccccCCccccccccc---CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          216 LFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRG---GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       216 l~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      |+|||+++........   ....||+.|+|||++.+   ..++.++|||||||++|+|+||+.||....
T Consensus       283 l~DFG~a~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~  348 (419)
T 3i6u_A          283 ITDFGHSKILGETSLM---RTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHR  348 (419)
T ss_dssp             ECCSSTTTSCC--------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCS
T ss_pred             EeecccceecCCCccc---cccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCc
Confidence            9999999876543221   45679999999999853   568899999999999999999999997543

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=3.6e-43  Score=316.87  Aligned_cols=198  Identities=23%  Similarity=0.306  Sum_probs=174.8

Q ss_pred             CCcCCccccCCCceEEEEEE------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecC--CcceE
Q 038823           73 YDERKFIKQDSTYKLYKGFW------QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLET--PIPIL  144 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~l  144 (338)
                      |.+.+.||+|+||.||++.+      +++.||+|++.........+.+.+|+.++++++||||+++++++.+.  ...++
T Consensus        33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l  112 (318)
T 3lxp_A           33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL  112 (318)
T ss_dssp             EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred             HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence            48889999999999999875      67889999998775666678899999999999999999999999874  56899


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ||||+++|+|.+++...      .+++..++.++.|++.||.|||   +.+|+|+||||+||+++.++.+||+|||++..
T Consensus       113 v~e~~~~~~L~~~l~~~------~~~~~~~~~i~~~l~~~l~~LH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~  183 (318)
T 3lxp_A          113 VMEYVPLGSLRDYLPRH------SIGLAQLLLFAQQICEGMAYLH---AQHYIHRDLAARNVLLDNDRLVKIGDFGLAKA  183 (318)
T ss_dssp             EECCCTTCBHHHHGGGS------CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCEE
T ss_pred             EEecccCCcHHHHHhhC------CCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEEcCCCCEEECCcccccc
Confidence            99999999999999764      4899999999999999999999   89999999999999999999999999999988


Q ss_pred             cCCCCce-eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          225 IPEGETH-IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       225 ~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ....... .......+|..|+|||.+.+..++.++||||||+++|+|+||+.||..
T Consensus       184 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~  239 (318)
T 3lxp_A          184 VPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQS  239 (318)
T ss_dssp             CCTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGS
T ss_pred             ccccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccc
Confidence            7654332 222445678889999999988899999999999999999999999975

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=1.7e-42  Score=315.48  Aligned_cols=198  Identities=18%  Similarity=0.205  Sum_probs=172.1

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcceE
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~l  144 (338)
                      ...++|.+.+.||+|+||.||+|..  +++.||+|.+......     ..+|++++.++ +||||+++++++.+.+..++
T Consensus        19 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~-----~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~l   93 (342)
T 2qr7_A           19 QFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRD-----PTEEIEILLRYGQHPNIITLKDVYDDGKYVYV   93 (342)
T ss_dssp             CHHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTCC-----CHHHHHHHHHHTTSTTBCCEEEEEECSSEEEE
T ss_pred             CccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccCC-----hHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEE
Confidence            3456799999999999999999999  7899999999765322     34688888888 79999999999999999999


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC----CceEEecCC
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE----NVAKLFDFS  220 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~----~~~kl~Dfg  220 (338)
                      ||||+++|+|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||+.++    +.+||+|||
T Consensus        94 v~E~~~gg~L~~~i~~~~-----~~~~~~~~~~~~qi~~al~~lH---~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg  165 (342)
T 2qr7_A           94 VTELMKGGELLDKILRQK-----FFSEREASAVLFTITKTVEYLH---AQGVVHRDLKPSNILYVDESGNPESIRICDFG  165 (342)
T ss_dssp             EECCCCSCBHHHHHHTCT-----TCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSCSGGGEEECCCT
T ss_pred             EEeCCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCcEeccCCHHHEEEecCCCCcCeEEEEECC
Confidence            999999999999998764     5999999999999999999999   8999999999999998533    359999999


Q ss_pred             CCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          221 ESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ++.........  .....||+.|+|||.+.+..++.++|||||||++|||++|+.||...
T Consensus       166 ~a~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~  223 (342)
T 2qr7_A          166 FAKQLRAENGL--LMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANG  223 (342)
T ss_dssp             TCEECBCTTCC--BCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSS
T ss_pred             CcccCcCCCCc--eeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCC
Confidence            99876543322  14557899999999998877999999999999999999999999753

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=7e-43  Score=316.10  Aligned_cols=204  Identities=19%  Similarity=0.225  Sum_probs=170.9

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEE--EEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcceEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLI--SVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~v--aik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv  145 (338)
                      ++|.+.+.||+|+||.||+|.+  ++..+  ++|.+.........+.+.+|+.+++++ +||||+++++++.+.+..++|
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv  104 (327)
T 1fvr_A           25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA  104 (327)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence            5788899999999999999998  66654  999987654555567789999999999 899999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCC-----------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCce
Q 038823          146 FEYGEYTTLRDRIFGAPQ-----------PHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVA  214 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~-----------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~  214 (338)
                      |||+++++|.+++.....           .....+++..++.++.|++.||.|||   +.+|+||||||+||+++.++.+
T Consensus       105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~~  181 (327)
T 1fvr_A          105 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVA  181 (327)
T ss_dssp             ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCE
T ss_pred             EecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCccceEEEcCCCeE
Confidence            999999999999976530           11126899999999999999999999   8999999999999999999999


Q ss_pred             EEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          215 KLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       215 kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      ||+|||++.......   ......+++.|+|||.+.+..++.++||||||+++|||+| |+.||...
T Consensus       182 kL~Dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~  245 (327)
T 1fvr_A          182 KIADFGLSRGQEVYV---KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGM  245 (327)
T ss_dssp             EECCTTCEESSCEEC---CC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             EEcccCcCccccccc---cccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCC
Confidence            999999987433211   1133457889999999988889999999999999999998 99999754

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=5.6e-42  Score=305.49  Aligned_cols=201  Identities=16%  Similarity=0.175  Sum_probs=178.6

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      .++|.+.+.||+|+||.||+|.+  ++..+|+|.+....  .....+.+.+|+.++++++|+||+++++++.+.+..++|
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   93 (294)
T 2rku_A           14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV   93 (294)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence            45788899999999999999999  67889999987542  334567789999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||+++++|.+++....     .+++..+..++.|++.||.|||   +.+|+|+||||+||+++.++.+||+|||++...
T Consensus        94 ~e~~~~~~L~~~~~~~~-----~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~  165 (294)
T 2rku_A           94 LELCRRRSLLELHKRRK-----ALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKV  165 (294)
T ss_dssp             EECCTTCBHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             EecCCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEcCCCCEEEEeccCceec
Confidence            99999999999987654     5999999999999999999999   899999999999999999999999999999876


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ......  .....||+.|+|||.+.+..++.++||||||+++|+|+||+.||...
T Consensus       166 ~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~  218 (294)
T 2rku_A          166 EYDGER--KKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS  218 (294)
T ss_dssp             CSTTCC--BCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             ccCccc--cccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            533221  14456899999999999888999999999999999999999999754

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=4.2e-42  Score=307.81  Aligned_cols=199  Identities=19%  Similarity=0.167  Sum_probs=174.1

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ..++|.+.+.||+|+||.||+|..  +++.||+|.+.... ....+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   85 (304)
T 2jam_A            7 IRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSP-AFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVM   85 (304)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC-------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhccceeeeeccCCCCceEEEEEECCCCCEEEEEEEeccc-ccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEE
Confidence            345688999999999999999998  78999999997552 223356889999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceee---CCCCceEEecCCCCc
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILF---NEENVAKLFDFSESI  223 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill---~~~~~~kl~Dfg~a~  223 (338)
                      ||+++++|.+++....     .+++..+..++.|++.||.|||   +.+|+|+||||+||++   +.++.+||+|||++.
T Consensus        86 e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~  157 (304)
T 2jam_A           86 QLVSGGELFDRILERG-----VYTEKDASLVIQQVLSAVKYLH---ENGIVHRDLKPENLLYLTPEENSKIMITDFGLSK  157 (304)
T ss_dssp             CCCCSCBHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTC
T ss_pred             EcCCCccHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEecCCCCCCEEEccCCcce
Confidence            9999999999987654     5899999999999999999999   8999999999999999   788999999999987


Q ss_pred             ccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .......    ....||+.|+|||.+.+..++.++||||||+++|+|++|+.||...
T Consensus       158 ~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  210 (304)
T 2jam_A          158 MEQNGIM----STACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEE  210 (304)
T ss_dssp             CCCCBTT----HHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             ecCCCcc----ccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence            6543221    3446899999999999989999999999999999999999999753

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.1e-42  Score=314.39  Aligned_cols=210  Identities=16%  Similarity=0.219  Sum_probs=172.0

Q ss_pred             cCHHHHHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeeee
Q 038823           61 FSAKELEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCCL  137 (338)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~  137 (338)
                      +...++....++|.+.+.||+|+||.||+|.+  +++.||+|.+.....  ..+.+.+|+.+++++ +||||+++++++.
T Consensus        14 ~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~--~~~~~~~e~~~l~~l~~h~~i~~~~~~~~   91 (326)
T 2x7f_A           14 IDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD--EEEEIKQEINMLKKYSHHRNIATYYGAFI   91 (326)
T ss_dssp             --CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS--TTHHHHHHHHHHHHHCCSTTBCCEEEEEE
T ss_pred             ccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc--cHHHHHHHHHHHHhccCCCCeeeeeeEEe
Confidence            44445566788899999999999999999999  788999999875422  236788999999999 7999999999997


Q ss_pred             c------CCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC
Q 038823          138 E------TPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE  211 (338)
Q Consensus       138 ~------~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~  211 (338)
                      .      .+..++||||+++++|.+++.....   ..+++..+..++.|++.||.|||   ..+|+|+||||+||+++.+
T Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~  165 (326)
T 2x7f_A           92 KKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKG---NTLKEEWIAYICREILRGLSHLH---QHKVIHRDIKGQNVLLTEN  165 (326)
T ss_dssp             ECC--CCCCEEEEEEECCTTEEHHHHHHHSGG---GCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTT
T ss_pred             eccCccccceEEEEEEcCCCCcHHHHHHhccc---CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCcHHHEEEcCC
Confidence            6      4578999999999999999986532   26899999999999999999999   8999999999999999999


Q ss_pred             CceEEecCCCCcccCCCCceeeeecccccCCcccccccc-----cCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          212 NVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKR-----GGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       212 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      +.+||+|||++.........  .....||+.|+|||.+.     +..++.++||||||+++|+|+||+.||...
T Consensus       166 ~~~kl~Dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  237 (326)
T 2x7f_A          166 AEVKLVDFGVSAQLDRTVGR--RNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDM  237 (326)
T ss_dssp             CCEEECCCTTTC---------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             CCEEEeeCcCceecCcCccc--cccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCC
Confidence            99999999998776433211  13456899999999986     456899999999999999999999999754

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=4.6e-42  Score=327.14  Aligned_cols=200  Identities=21%  Similarity=0.261  Sum_probs=174.3

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      ..++|.+.+.||+|+||+||+|..  +++.||+|++.... .......+.+|+.++++++||||+++++++.+.+..++|
T Consensus        20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv   99 (486)
T 3mwu_A           20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV   99 (486)
T ss_dssp             HHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEE
Confidence            345699999999999999999999  78999999986432 223347789999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeC---CCCceEEecCCCC
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFN---EENVAKLFDFSES  222 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~---~~~~~kl~Dfg~a  222 (338)
                      |||+.+|+|.+.+....     .+++..+..++.|++.||.|||   +.+|+||||||+|||++   .++.+||+|||++
T Consensus       100 ~e~~~~~~L~~~~~~~~-----~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a  171 (486)
T 3mwu_A          100 GELYTGGELFDEIIKRK-----RFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLS  171 (486)
T ss_dssp             ECCCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEESSSSTTCCEEECSCSCT
T ss_pred             EEcCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEEECCcC
Confidence            99999999999887654     5999999999999999999999   89999999999999995   4567999999999


Q ss_pred             cccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          223 ISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       223 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .........   ....||+.|+|||++.+ .++.++|||||||++|+|++|++||...
T Consensus       172 ~~~~~~~~~---~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~  225 (486)
T 3mwu_A          172 TCFQQNTKM---KDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGK  225 (486)
T ss_dssp             TTBCCC-------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             eECCCCCcc---CCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            876544322   45579999999999875 5999999999999999999999999754

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=6.2e-42  Score=311.05  Aligned_cols=202  Identities=16%  Similarity=0.176  Sum_probs=179.4

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      ..++|.+.+.||+|+||.||++.+  ++..+|+|.+....  .....+.+.+|+.++++++|+||+++++++.+.+..++
T Consensus        39 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  118 (335)
T 2owb_A           39 SRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFV  118 (335)
T ss_dssp             TTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             cCCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEE
Confidence            346788999999999999999999  67899999987542  33456778999999999999999999999999999999


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ||||+++++|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++..
T Consensus       119 v~e~~~~~~L~~~~~~~~-----~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~  190 (335)
T 2owb_A          119 VLELCRRRSLLELHKRRK-----ALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATK  190 (335)
T ss_dssp             EECCCTTCBHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             EEecCCCCCHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHH---HCCCEecCCCchhEEEcCCCCEEEeeccCcee
Confidence            999999999999987653     5999999999999999999999   89999999999999999999999999999987


Q ss_pred             cCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          225 IPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       225 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .......  .....||..|+|||.+.+..++.++||||||+++|+|++|+.||...
T Consensus       191 ~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  244 (335)
T 2owb_A          191 VEYDGER--KKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS  244 (335)
T ss_dssp             CCSTTCC--BCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             cccCccc--ccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCC
Confidence            6533221  14456899999999999888999999999999999999999999753

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.1e-41  Score=306.29  Aligned_cols=201  Identities=19%  Similarity=0.232  Sum_probs=172.2

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      ...++|.+.+.||+|+||.||+|.+  ++..||+|.+.....   .+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus        26 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~---~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv  102 (314)
T 3com_A           26 QPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESD---LQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIV  102 (314)
T ss_dssp             ----CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTSC---CHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cchhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchHH---HHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEE
Confidence            3456799999999999999999999  689999999975422   35688999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||+++++|.+++.....    .+++..+..++.|++.||.|||   ..+++|+||||+||+++.++.+||+|||++...
T Consensus       103 ~e~~~~~~L~~~~~~~~~----~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~  175 (314)
T 3com_A          103 MEYCGAGSVSDIIRLRNK----TLTEDEIATILQSTLKGLEYLH---FMRKIHRDIKAGNILLNTEGHAKLADFGVAGQL  175 (314)
T ss_dssp             EECCTTEEHHHHHHHHTC----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             eecCCCCCHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHH---hCCCcCCCcCHHHEEECCCCCEEEeecccchhh
Confidence            999999999999974332    6999999999999999999999   899999999999999999999999999999776


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ......  .....||..|+|||.+.+..++.++||||||+++|+|++|+.||...
T Consensus       176 ~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  228 (314)
T 3com_A          176 TDTMAK--RNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADI  228 (314)
T ss_dssp             BTTBSC--BCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             hhhccc--cCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence            543221  14456899999999999888999999999999999999999999754

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=6.3e-42  Score=308.14  Aligned_cols=204  Identities=19%  Similarity=0.200  Sum_probs=169.6

Q ss_pred             hcCCCcC-CccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcceEE
Q 038823           70 TNNYDER-KFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        70 ~~~~~~~-~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv  145 (338)
                      .+.|.+. +.||+|+||.||+|..  +++.||+|++... .....+.+.+|+.++.++ +||||+++++++.+.+..++|
T Consensus        11 ~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv   89 (316)
T 2ac3_A           11 EDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQ-PGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLV   89 (316)
T ss_dssp             TTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECC-SSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             ceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeC-cchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEE
Confidence            4567774 7899999999999998  7899999999765 333447789999999985 799999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCc---eEEecCCCC
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENV---AKLFDFSES  222 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~---~kl~Dfg~a  222 (338)
                      |||+++++|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.   +||+|||++
T Consensus        90 ~e~~~~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~  161 (316)
T 2ac3_A           90 FEKMRGGSILSHIHKRR-----HFNELEASVVVQDVASALDFLH---NKGIAHRDLKPENILCEHPNQVSPVKICDFDLG  161 (316)
T ss_dssp             EECCTTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESCSSSSCSEEECCTTCC
T ss_pred             EEcCCCCcHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEEccCCCcCceEEEEccCc
Confidence            99999999999997753     5899999999999999999999   899999999999999998776   999999998


Q ss_pred             cccCCCCce-----eeeecccccCCccccccccc-----CCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          223 ISIPEGETH-----IITRSRFGAWTYSAPEYKRG-----GVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       223 ~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      .........     .......||+.|+|||.+..     ..++.++|||||||++|||+||+.||.....
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~  231 (316)
T 2ac3_A          162 SGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCG  231 (316)
T ss_dssp             C-------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCC
T ss_pred             cccccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCccccc
Confidence            765432111     11133458999999999875     4588999999999999999999999986543

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=7.3e-42  Score=327.14  Aligned_cols=202  Identities=22%  Similarity=0.222  Sum_probs=174.6

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCc------------hHHHHHHHHHHHHhccCCcceeeee
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSD------------SACKFSINNIVYAAQMDHKHILKLI  133 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~------------~~~~~~~~e~~~l~~l~h~niv~l~  133 (338)
                      ...++|.+.+.||+|+||+||+|..  ++..||+|++......            ...+.+.+|+.++++++||||++++
T Consensus        33 ~i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~  112 (504)
T 3q5i_A           33 KIGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLF  112 (504)
T ss_dssp             CGGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             CcccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence            3467899999999999999999999  6789999998754311            2346789999999999999999999


Q ss_pred             eeeecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC-
Q 038823          134 GCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN-  212 (338)
Q Consensus       134 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~-  212 (338)
                      +++.+.+..++||||+++|+|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++ 
T Consensus       113 ~~~~~~~~~~lv~e~~~gg~L~~~l~~~~-----~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~  184 (504)
T 3q5i_A          113 DVFEDKKYFYLVTEFYEGGELFEQIINRH-----KFDECDAANIMKQILSGICYLH---KHNIVHRDIKPENILLENKNS  184 (504)
T ss_dssp             EEEECSSEEEEEEECCTTCBHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESSTTC
T ss_pred             EEEEcCCEEEEEEecCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCcHHHEEEecCCC
Confidence            99999999999999999999999987654     5999999999999999999999   89999999999999998776 


Q ss_pred             --ceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          213 --VAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       213 --~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                        .+||+|||++.........   ....||+.|+|||.+. +.++.++|||||||++|+|++|++||....
T Consensus       185 ~~~~kl~Dfg~a~~~~~~~~~---~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~  251 (504)
T 3q5i_A          185 LLNIKIVDFGLSSFFSKDYKL---RDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQN  251 (504)
T ss_dssp             CSSEEECCCTTCEECCTTSCB---CCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             CccEEEEECCCCEEcCCCCcc---ccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCC
Confidence              6999999999877554322   4557999999999986 569999999999999999999999998643

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=3.2e-43  Score=310.98  Aligned_cols=202  Identities=20%  Similarity=0.264  Sum_probs=169.0

Q ss_pred             HHHhhcCCCcCCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecC-CcceE
Q 038823           66 LEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLET-PIPIL  144 (338)
Q Consensus        66 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-~~~~l  144 (338)
                      +....++|.+.+.||+|+||.||+|.+++..||+|.+....   ..+.+.+|+.++++++||||+++++++.+. +..++
T Consensus        16 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~---~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~l   92 (278)
T 1byg_A           16 WALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDA---TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYI   92 (278)
T ss_dssp             CBCCGGGEEEEEEEEECSSCEEEEEEETTEEEEEEECCCCC-----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEE
T ss_pred             ccCChhhceEEeEEecCCCceEEEEEEcCCEEEEEEecchh---HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEE
Confidence            34456789999999999999999999999999999997542   346789999999999999999999997654 47899


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ||||+++++|.+++.....   ..+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||++..
T Consensus        93 v~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~  166 (278)
T 1byg_A           93 VTEYMAKGSLVDYLRSRGR---SVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKE  166 (278)
T ss_dssp             EECCCTTEEHHHHHHHHHH---HHCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEECCCCC---
T ss_pred             EEecCCCCCHHHHHHhccc---ccCCHHHHHHHHHHHHHHHHHHH---hCCccccCCCcceEEEeCCCcEEEeecccccc
Confidence            9999999999999976432   13889999999999999999999   89999999999999999999999999999876


Q ss_pred             cCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          225 IPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       225 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      .....     ....++..|+|||.+.+..++.++||||||+++|+|+| |+.||....
T Consensus       167 ~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~  219 (278)
T 1byg_A          167 ASSTQ-----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP  219 (278)
T ss_dssp             --------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSC
T ss_pred             ccccc-----cCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCC
Confidence            54432     23357889999999998899999999999999999998 999997643

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=7.3e-43  Score=312.08  Aligned_cols=213  Identities=17%  Similarity=0.213  Sum_probs=160.0

Q ss_pred             HHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcce
Q 038823           66 LEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        66 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      +....++|.+.+.||+|+||.||+|.+  ++..||+|.+.........+.+.+|+.++++++||||+++++++...+..+
T Consensus        10 ~~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   89 (303)
T 2vwi_A           10 WSINRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELW   89 (303)
T ss_dssp             ---CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEE
T ss_pred             cccchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcE
Confidence            456678899999999999999999998  788999999876544445577889999999999999999999999999999


Q ss_pred             EEEeecCCCCHHHhhhcC---CCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          144 LVFEYGEYTTLRDRIFGA---PQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~---~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                      +||||+++++|.+++...   .......+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||
T Consensus        90 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg  166 (303)
T 2vwi_A           90 LVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLH---KNGQIHRDVKAGNILLGEDGSVQIADFG  166 (303)
T ss_dssp             EEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTCCEEECCCH
T ss_pred             EEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCCChhhEEEcCCCCEEEEecc
Confidence            999999999999998641   1001126899999999999999999999   8999999999999999999999999999


Q ss_pred             CCcccCCCCce---eeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          221 ESISIPEGETH---IITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       221 ~a~~~~~~~~~---~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ++.........   .......||+.|+|||.+.+ ..++.++||||||+++|+|+||+.||....
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  231 (303)
T 2vwi_A          167 VSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYP  231 (303)
T ss_dssp             HHHHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSC
T ss_pred             chheeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCc
Confidence            98765433211   11134568999999999865 568999999999999999999999998644

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=6.9e-42  Score=326.53  Aligned_cols=200  Identities=21%  Similarity=0.227  Sum_probs=171.0

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      .+.|.+.+.||+|+||.||+|..  ++..||+|++.... .......+.+|+.+++.++||||+++++++.+.+..++||
T Consensus        36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  115 (494)
T 3lij_A           36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVM  115 (494)
T ss_dssp             HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            44689999999999999999999  78899999987543 2233467899999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC---CceEEecCCCCc
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE---NVAKLFDFSESI  223 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~---~~~kl~Dfg~a~  223 (338)
                      ||+++|+|.+.+....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.+   +.+||+|||++.
T Consensus       116 e~~~~g~L~~~~~~~~-----~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~  187 (494)
T 3lij_A          116 ECYKGGELFDEIIHRM-----KFNEVDAAVIIKQVLSGVTYLH---KHNIVHRDLKPENLLLESKEKDALIKIVDFGLSA  187 (494)
T ss_dssp             ECCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECCCTTCE
T ss_pred             ecCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChhhEEEeCCCCCCcEEEEECCCCe
Confidence            9999999999887654     5999999999999999999999   8999999999999999764   559999999998


Q ss_pred             ccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ........   ....||+.|+|||++. +.++.++|||||||++|+|++|++||....
T Consensus       188 ~~~~~~~~---~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~  241 (494)
T 3lij_A          188 VFENQKKM---KERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQT  241 (494)
T ss_dssp             ECBTTBCB---CCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             ECCCCccc---cccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCC
Confidence            76554322   4557999999999886 569999999999999999999999997543

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=1.4e-41  Score=302.62  Aligned_cols=201  Identities=20%  Similarity=0.230  Sum_probs=170.9

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeec
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYG  149 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  149 (338)
                      +|....+||+|+||.||+|.+  ++..||+|.+... .....+.+.+|+.+++.++||||+++++++.+.+..++||||+
T Consensus        23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~  101 (295)
T 2clq_A           23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPER-DSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQV  101 (295)
T ss_dssp             TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECC-CC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCC-chHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeC
Confidence            355556999999999999998  7889999998765 3344577899999999999999999999999999999999999


Q ss_pred             CCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC-CCceEEecCCCCcccCCC
Q 038823          150 EYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE-ENVAKLFDFSESISIPEG  228 (338)
Q Consensus       150 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~-~~~~kl~Dfg~a~~~~~~  228 (338)
                      ++++|.+++......  ..+++..+..++.|++.||.|||   +.+|+|+||||+||+++. ++.+||+|||++......
T Consensus       102 ~~~~L~~~l~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~  176 (295)
T 2clq_A          102 PGGSLSALLRSKWGP--LKDNEQTIGFYTKQILEGLKYLH---DNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGI  176 (295)
T ss_dssp             SEEEHHHHHHHTTCC--CTTCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC-
T ss_pred             CCCCHHHHHHhhccC--CCccHHHHHHHHHHHHHHHHHHH---hCCEEccCCChhhEEEECCCCCEEEeecccccccCCC
Confidence            999999999765321  25779999999999999999999   899999999999999987 899999999999876543


Q ss_pred             CceeeeecccccCCcccccccccCC--CCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGV--FNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ...  .....||+.|+|||.+.+..  ++.++||||||+++|+|+||+.||...
T Consensus       177 ~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  228 (295)
T 2clq_A          177 NPC--TETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYEL  228 (295)
T ss_dssp             ------CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGG
T ss_pred             CCc--ccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCC
Confidence            211  14456899999999987654  889999999999999999999999753

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=2.1e-42  Score=329.41  Aligned_cols=200  Identities=19%  Similarity=0.245  Sum_probs=177.1

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      ..++|.+.+.||+|+||.||+|..  +++.||+|++....  .....+.+.+|+.++++++||||+++++++.+.+..++
T Consensus        24 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~l  103 (484)
T 3nyv_A           24 FSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYL  103 (484)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred             ccCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence            345689999999999999999999  78999999986543  23345788999999999999999999999999999999


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceee---CCCCceEEecCCC
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILF---NEENVAKLFDFSE  221 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill---~~~~~~kl~Dfg~  221 (338)
                      ||||+.+|+|.+.+....     .+++..+..++.|++.||.|||   +.+|+||||||+|||+   +.++.+||+|||+
T Consensus       104 v~e~~~~~~L~~~~~~~~-----~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~  175 (484)
T 3nyv_A          104 VGEVYTGGELFDEIISRK-----RFSEVDAARIIRQVLSGITYMH---KNKIVHRDLKPENLLLESKSKDANIRIIDFGL  175 (484)
T ss_dssp             EECCCCSCBHHHHHHTCS-----CCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSTTCCEEECCTTH
T ss_pred             EEecCCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEEecCCCCCcEEEEeeee
Confidence            999999999999997764     5999999999999999999999   8999999999999999   4678999999999


Q ss_pred             CcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          222 SISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       222 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      +.........   ....||+.|+|||.+.+ .++.++|||||||++|+|++|++||...
T Consensus       176 a~~~~~~~~~---~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~  230 (484)
T 3nyv_A          176 STHFEASKKM---KDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGA  230 (484)
T ss_dssp             HHHBCCCCSH---HHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             eEEccccccc---ccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCC
Confidence            9876554322   44569999999999865 6999999999999999999999999854

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.3e-41  Score=312.74  Aligned_cols=197  Identities=15%  Similarity=0.178  Sum_probs=168.3

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCC------
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETP------  140 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~------  140 (338)
                      .++|...+.||+|+||.||+|.+  +++.||+|++.... .....+.+.+|+.++++++||||+++++++...+      
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  103 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT  103 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence            46789999999999999999998  78999999996543 3444677899999999999999999999997653      


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                      ..++||||+ +++|.+++...      .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||
T Consensus       104 ~~~lv~e~~-~~~L~~~~~~~------~l~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg  173 (367)
T 1cm8_A          104 DFYLVMPFM-GTDLGKLMKHE------KLGEDRIQFLVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFG  173 (367)
T ss_dssp             CCEEEEECC-SEEHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCT
T ss_pred             eEEEEEecC-CCCHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCHHHEEEcCCCCEEEEeee
Confidence            469999999 68999999763      5899999999999999999999   8999999999999999999999999999


Q ss_pred             CCcccCCCCceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          221 ESISIPEGETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      +++......     ....+|..|+|||.+.+ ..++.++|||||||++|||++|+.||....
T Consensus       174 ~a~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~  230 (367)
T 1cm8_A          174 LARQADSEM-----TGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSD  230 (367)
T ss_dssp             TCEECCSSC-----CSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             ccccccccc-----CcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            998765432     44578999999999877 679999999999999999999999998643

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=7.5e-43  Score=310.75  Aligned_cols=208  Identities=19%  Similarity=0.246  Sum_probs=174.5

Q ss_pred             HHHHhhcCCCcCC-ccccCCCceEEEEEE----CCeEEEEEEeCcCCC-chHHHHHHHHHHHHhccCCcceeeeeeeeec
Q 038823           65 ELEIATNNYDERK-FIKQDSTYKLYKGFW----QERLISVMKYNESYS-DSACKFSINNIVYAAQMDHKHILKLIGCCLE  138 (338)
Q Consensus        65 ~~~~~~~~~~~~~-~lg~G~~g~Vy~~~~----~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~  138 (338)
                      ++....++|.+.+ .||+|+||.||+|.+    .+..||+|.+..... ....+.+.+|+.++++++||||+++++++ .
T Consensus        10 ~~~~~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~   88 (291)
T 1xbb_A           10 EVYLDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-E   88 (291)
T ss_dssp             -CBCCGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-E
T ss_pred             eeeecchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-C
Confidence            4445556788777 999999999999965    467899999976532 33467899999999999999999999999 5


Q ss_pred             CCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEec
Q 038823          139 TPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFD  218 (338)
Q Consensus       139 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~D  218 (338)
                      .+..++||||+++++|.+++....     .+++..++.++.|++.||.|||   +.+|+|+||||+||+++.++.+||+|
T Consensus        89 ~~~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nil~~~~~~~kl~D  160 (291)
T 1xbb_A           89 AESWMLVMEMAELGPLNKYLQQNR-----HVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISD  160 (291)
T ss_dssp             SSSEEEEEECCTTEEHHHHHHHCT-----TCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECC
T ss_pred             CCCcEEEEEeCCCCCHHHHHHhCc-----CCCHHHHHHHHHHHHHHHHHHH---hCCeEcCCCCcceEEEeCCCcEEEcc
Confidence            667899999999999999998754     5999999999999999999999   89999999999999999999999999


Q ss_pred             CCCCcccCCCCcee-eeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          219 FSESISIPEGETHI-ITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       219 fg~a~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      ||++.......... ......++..|+|||.+.+..++.++||||||+++|+|+| |+.||....
T Consensus       161 fg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~  225 (291)
T 1xbb_A          161 FGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK  225 (291)
T ss_dssp             CTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCC
T ss_pred             CCcceeeccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCC
Confidence            99998775543322 1133446788999999988889999999999999999999 999998643

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=4.8e-42  Score=311.56  Aligned_cols=199  Identities=21%  Similarity=0.245  Sum_probs=162.6

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHH--HhccCCcceeeeeeeee-----cCC
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVY--AAQMDHKHILKLIGCCL-----ETP  140 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~--l~~l~h~niv~l~~~~~-----~~~  140 (338)
                      ...++|.+.+.||+|+||.||+|+.+++.||+|++...    ....+..|..+  +..++|+||+++++++.     ...
T Consensus        10 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~----~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~   85 (336)
T 3g2f_A           10 LDLDNLKLLELIGRGRYGAVYKGSLDERPVAVKVFSFA----NRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRM   85 (336)
T ss_dssp             CCTTSEEEEEEEEECSSEEEEEEEETTEEEEEEEEEGG----GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCE
T ss_pred             cChHHhheeeecccCCCeEEEEEEECCeEEEEEEeecc----chhhHHHHHHHHHHHhccCcchhhheecccccccCCCc
Confidence            34567899999999999999999999999999998643    22334444444  45589999999998553     233


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC---------CeeecCCCCCceeeCCC
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPR---------PIVFGNLISLCILFNEE  211 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~---------~iiH~dik~~Nill~~~  211 (338)
                      ..++||||+++|+|.+++...      ..++..+..++.|++.||.|||   +.         +|+||||||+|||++.+
T Consensus        86 ~~~lv~e~~~~g~L~~~l~~~------~~~~~~~~~i~~qi~~~L~~LH---~~~~~~~~~~~~ivH~Dikp~Nill~~~  156 (336)
T 3g2f_A           86 EYLLVMEYYPNGSLXKYLSLH------TSDWVSSCRLAHSVTRGLAYLH---TELPRGDHYKPAISHRDLNSRNVLVKND  156 (336)
T ss_dssp             EEEEEECCCTTCBHHHHHHHC------CBCHHHHHHHHHHHHHHHHHHH---CCBCCGGGCBCCEECSSCSGGGEEECTT
T ss_pred             eEEEEEecCCCCcHHHHHhhc------ccchhHHHHHHHHHHHHHHHHH---hhhccccccccceeecccccceEEEcCC
Confidence            578999999999999999765      4689999999999999999999   77         99999999999999999


Q ss_pred             CceEEecCCCCcccCCCCc------eeeeecccccCCccccccccc-------CCCCccchHHHHHHHHHHHHhCCCCcC
Q 038823          212 NVAKLFDFSESISIPEGET------HIITRSRFGAWTYSAPEYKRG-------GVFNEKLDVYTFSTVLLELLTGQSTRD  278 (338)
Q Consensus       212 ~~~kl~Dfg~a~~~~~~~~------~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~s~Gv~l~el~tG~~p~~  278 (338)
                      +.+||+|||++........      ........||+.|+|||.+.+       ..++.++|||||||++|||+||..||.
T Consensus       157 ~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~  236 (336)
T 3g2f_A          157 GTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLF  236 (336)
T ss_dssp             SCEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGS
T ss_pred             CcEEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCC
Confidence            9999999999987654321      111134569999999999876       346678999999999999999987765


Q ss_pred             C
Q 038823          279 L  279 (338)
Q Consensus       279 ~  279 (338)
                      .
T Consensus       237 ~  237 (336)
T 3g2f_A          237 P  237 (336)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=2.6e-42  Score=308.59  Aligned_cols=202  Identities=19%  Similarity=0.205  Sum_probs=170.7

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ..+.|.+.+.||+|+||.||+|.+  ++..||+|.+... .....+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus        17 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   95 (302)
T 2j7t_A           17 PNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETK-SEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMI   95 (302)
T ss_dssp             GGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC-----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEE
T ss_pred             CccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCC-CHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEE
Confidence            456789999999999999999999  6889999998765 3344578899999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++++|.+++.....    .+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||++....
T Consensus        96 e~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  168 (302)
T 2j7t_A           96 EFCPGGAVDAIMLELDR----GLTEPQIQVVCRQMLEALNFLH---SKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNL  168 (302)
T ss_dssp             ECCTTEEHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHH
T ss_pred             EeCCCCcHHHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHHHEEECCCCCEEEEECCCCcccc
Confidence            99999999999876443    6999999999999999999999   8999999999999999999999999999875432


Q ss_pred             CCCceeeeecccccCCccccccc-----ccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYK-----RGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~-----~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ....  ......||..|+|||.+     ....++.++||||||+++|+|+||+.||...
T Consensus       169 ~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  225 (302)
T 2j7t_A          169 KTLQ--KRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHEL  225 (302)
T ss_dssp             HHHH--C-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             cccc--ccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccC
Confidence            1111  11344689999999998     3567899999999999999999999999754

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=2.5e-42  Score=312.86  Aligned_cols=204  Identities=15%  Similarity=0.229  Sum_probs=167.3

Q ss_pred             HHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC-chHHHHHHHHHHHHhccCCcceeeeeeeeecCCcce
Q 038823           67 EIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS-DSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        67 ~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      ....++|.+.+.||+|+||.||+|.+  +++.||+|++..... ....+.+.+|+.++++++||||+++++++.+.+..+
T Consensus        30 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  109 (329)
T 3gbz_A           30 ATSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLH  109 (329)
T ss_dssp             --CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEE
T ss_pred             ccchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEE
Confidence            34557899999999999999999998  889999999975532 233456789999999999999999999999999999


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeC-----CCCceEEec
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFN-----EENVAKLFD  218 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~-----~~~~~kl~D  218 (338)
                      +||||++ |+|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++     .++.+||+|
T Consensus       110 lv~e~~~-~~L~~~~~~~~-----~~~~~~~~~i~~ql~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~D  180 (329)
T 3gbz_A          110 LIFEYAE-NDLKKYMDKNP-----DVSMRVIKSFLYQLINGVNFCH---SRRCLHRDLKPQNLLLSVSDASETPVLKIGD  180 (329)
T ss_dssp             EEEECCS-EEHHHHHHHCT-----TCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEC-----CCEEEECC
T ss_pred             EEEecCC-CCHHHHHhhcC-----CCCHHHHHHHHHHHHHHHHHHH---hCCEECCCCCHHHEEEecCCCCccceEEECc
Confidence            9999999 69999998764     5999999999999999999999   89999999999999994     555699999


Q ss_pred             CCCCcccCCCCceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          219 FSESISIPEGETHIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       219 fg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ||++.........  .....||..|+|||.+.+. .++.++|||||||++|||++|+.||....
T Consensus       181 fg~a~~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~  242 (329)
T 3gbz_A          181 FGLARAFGIPIRQ--FTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDS  242 (329)
T ss_dssp             TTHHHHHC-------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             CCCccccCCcccc--cCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCC
Confidence            9999876533221  1445689999999998774 48999999999999999999999997543

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=6.6e-43  Score=322.50  Aligned_cols=202  Identities=12%  Similarity=0.098  Sum_probs=163.7

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHH---HHHhccCCcceeeee-------ee
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNI---VYAAQMDHKHILKLI-------GC  135 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~---~~l~~l~h~niv~l~-------~~  135 (338)
                      .++|.+.+.||+|+||.||+|.+  +++.||+|++....  .....+.+.+|+   .++++++||||++++       ++
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~  151 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  151 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence            46788889999999999999997  68999999997432  334557889999   555666899999998       55


Q ss_pred             eecCC-----------------cceEEEeecCCCCHHHhhhcCCCC--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCe
Q 038823          136 CLETP-----------------IPILVFEYGEYTTLRDRIFGAPQP--HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPI  196 (338)
Q Consensus       136 ~~~~~-----------------~~~lv~e~~~~gsL~~~l~~~~~~--~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~i  196 (338)
                      +.+.+                 ..++||||+. |+|.+++......  ....+++..++.++.||+.||.|||   +.+|
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~~-g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~i  227 (377)
T 3byv_A          152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQ-SNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGL  227 (377)
T ss_dssp             EECTTSCSEEEC------CEEESEEEEEECCS-EEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHH---HTTE
T ss_pred             hhccCCccccccccCCCceEEEEEEEEEeccC-CCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHH---hCCe
Confidence            54443                 2789999994 8999999764310  0013446888999999999999999   8999


Q ss_pred             eecCCCCCceeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccC-----------CCCccchHHHHHH
Q 038823          197 VFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGG-----------VFNEKLDVYTFST  265 (338)
Q Consensus       197 iH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~~Dv~s~Gv  265 (338)
                      +||||||+|||++.++.+||+|||+++.....     .....| +.|+|||++.+.           .++.++|||||||
T Consensus       228 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~~-----~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~  301 (377)
T 3byv_A          228 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAR-----VVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGL  301 (377)
T ss_dssp             ECSCCCGGGEEECTTCCEEECCGGGCEETTCE-----EECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHH
T ss_pred             ecCCCCHHHEEEcCCCCEEEEechhheecCCc-----ccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHH
Confidence            99999999999999999999999999864331     144567 999999999877           7999999999999


Q ss_pred             HHHHHHhCCCCcCCcc
Q 038823          266 VLLELLTGQSTRDLLR  281 (338)
Q Consensus       266 ~l~el~tG~~p~~~~~  281 (338)
                      ++|||+||+.||....
T Consensus       302 il~elltg~~Pf~~~~  317 (377)
T 3byv_A          302 VIYWIWCADLPITKDA  317 (377)
T ss_dssp             HHHHHHHSSCCC----
T ss_pred             HHHHHHHCCCCCcccc
Confidence            9999999999997543

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=1.2e-41  Score=303.21  Aligned_cols=249  Identities=14%  Similarity=0.102  Sum_probs=191.8

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeee-ecCCcceE
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC-LETPIPIL  144 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~-~~~~~~~l  144 (338)
                      ...++|.+.+.||+|+||.||+|.+  +++.||+|++......   ..+.+|+.+++.++|++++..++.+ .+.+..++
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~l   82 (296)
T 4hgt_A            6 RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH---PQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVM   82 (296)
T ss_dssp             -----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---C---CCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEE
T ss_pred             ccCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccccc---hHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEE
Confidence            3457899999999999999999997  8899999987644222   3478899999999988877766655 56778899


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceee---CCCCceEEecCCC
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILF---NEENVAKLFDFSE  221 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill---~~~~~~kl~Dfg~  221 (338)
                      ||||+ +++|.+++.....    .+++..+..++.|++.||.|||   +.+|+||||||+|||+   +.++.+||+|||+
T Consensus        83 v~e~~-~~~L~~~~~~~~~----~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~  154 (296)
T 4hgt_A           83 VMELL-GPSLEDLFNFCSR----KFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGL  154 (296)
T ss_dssp             EEECC-CCBHHHHHHHTTS----CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECCGGGTTCEEECCCTT
T ss_pred             EEEcc-CCCHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeeeeccCCCCeEEEecCcc
Confidence            99999 8999999986543    6999999999999999999999   8999999999999999   7889999999999


Q ss_pred             CcccCCCCce-----eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHHHHHH
Q 038823          222 SISIPEGETH-----IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNY  296 (338)
Q Consensus       222 a~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~~~~~  296 (338)
                      +.........     .......||+.|+|||.+.+..++.++|||||||++|+|++|+.||...........+.......
T Consensus       155 a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~  234 (296)
T 4hgt_A          155 AKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKK  234 (296)
T ss_dssp             CEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHH
T ss_pred             ceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhccc
Confidence            9876554321     11235578999999999999999999999999999999999999998765533333333222222


Q ss_pred             Hh----------cCccccccccccccCcCCcccHHHHHHHH
Q 038823          297 LQ----------NNRFTEIADPIIVQDLSCTETEHQFQACA  327 (338)
Q Consensus       297 ~~----------~~~~~~~~d~~l~~~~~~~~~~~~~~~~~  327 (338)
                      ..          ...+.+++..++..+|..|++..++.+.+
T Consensus       235 ~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l  275 (296)
T 4hgt_A          235 MSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLF  275 (296)
T ss_dssp             HHSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHH
T ss_pred             ccchhhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence            11          12355666666666777776665554444

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=3.7e-41  Score=306.31  Aligned_cols=256  Identities=17%  Similarity=0.201  Sum_probs=197.1

Q ss_pred             HHHHHHhhcCCCcCCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhc--cCCcceeeeeeeeecCC
Q 038823           63 AKELEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQ--MDHKHILKLIGCCLETP  140 (338)
Q Consensus        63 ~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~l~~~~~~~~  140 (338)
                      ..--....++|.+.+.||+|+||.||+|.++++.||+|.+...    ....+.+|.+++..  ++||||+++++++...+
T Consensus        34 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~----~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~  109 (342)
T 1b6c_B           34 LLVQRTIARTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSR----EERSWFREAEIYQTVMLRHENILGFIAADNKDN  109 (342)
T ss_dssp             HHHHHHHHHHCEEEEEEEEETTEEEEEEEETTEEEEEEEECGG----GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCC
T ss_pred             eeecccccccEEEEeeecCCCCcEEEEEEEcCccEEEEEeCch----hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccC
Confidence            3333455678999999999999999999999999999999643    33567788888887  78999999999998776


Q ss_pred             ----cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC-----CCCCeeecCCCCCceeeCCC
Q 038823          141 ----IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVG-----FPRPIVFGNLISLCILFNEE  211 (338)
Q Consensus       141 ----~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~-----~~~~iiH~dik~~Nill~~~  211 (338)
                          ..++||||+++|+|.+++...      .+++..++.++.|++.||.|||..     .+.+|+||||||+||+++.+
T Consensus       110 ~~~~~~~lv~e~~~~g~L~~~l~~~------~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~  183 (342)
T 1b6c_B          110 GTWTQLWLVSDYHEHGSLFDYLNRY------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKN  183 (342)
T ss_dssp             SSCCCEEEEECCCTTCBHHHHHHHC------CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTT
T ss_pred             CccceeEEEEeecCCCcHHHHHhcc------CccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCC
Confidence                789999999999999999764      589999999999999999999942     14689999999999999999


Q ss_pred             CceEEecCCCCcccCCCCcee--eeecccccCCcccccccccCC------CCccchHHHHHHHHHHHHhC----------
Q 038823          212 NVAKLFDFSESISIPEGETHI--ITRSRFGAWTYSAPEYKRGGV------FNEKLDVYTFSTVLLELLTG----------  273 (338)
Q Consensus       212 ~~~kl~Dfg~a~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~------~~~~~Dv~s~Gv~l~el~tG----------  273 (338)
                      +.+||+|||++..........  ......||+.|+|||.+.+..      ++.++||||||+++|||+||          
T Consensus       184 ~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~  263 (342)
T 1b6c_B          184 GTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDY  263 (342)
T ss_dssp             SCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCC
T ss_pred             CCEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCccccc
Confidence            999999999998765543321  124557999999999987653      33789999999999999999          


Q ss_pred             CCCcCCccCCcccccHHHHHHHHHhcCccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          274 QSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       274 ~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                      +.||.......  .....+ ........+...+....       ....+...+.+++.+||+.||
T Consensus       264 ~~p~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~li~~cl~~dp  318 (342)
T 1b6c_B          264 QLPYYDLVPSD--PSVEEM-RKVVCEQKLRPNIPNRW-------QSCEALRVMAKIMRECWYANG  318 (342)
T ss_dssp             CCTTTTTSCSS--CCHHHH-HHHHTTSCCCCCCCGGG-------GTSHHHHHHHHHHHHHCCSSG
T ss_pred             ccCccccCcCc--ccHHHH-HHHHHHHHhCCCCcccc-------cchhHHHHHHHHHHHHhccCh
Confidence            77886543311  112222 22222222222111111       123566778899999999887

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=4e-42  Score=311.29  Aligned_cols=207  Identities=18%  Similarity=0.128  Sum_probs=175.9

Q ss_pred             HHHHhhcCCCcC-CccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccC-CcceeeeeeeeecC
Q 038823           65 ELEIATNNYDER-KFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMD-HKHILKLIGCCLET  139 (338)
Q Consensus        65 ~~~~~~~~~~~~-~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~  139 (338)
                      ......+.|.+. +.||+|+||.||+|..  +++.||+|++.... .......+.+|+.++..+. ||||+++++++.+.
T Consensus        22 ~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~  101 (327)
T 3lm5_A           22 SMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENT  101 (327)
T ss_dssp             CHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECS
T ss_pred             HHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeC
Confidence            344556667776 8899999999999999  68999999987543 3334577899999999995 79999999999999


Q ss_pred             CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC---CCceEE
Q 038823          140 PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE---ENVAKL  216 (338)
Q Consensus       140 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~---~~~~kl  216 (338)
                      +..++||||+++|+|.+++.....   ..+++..+..++.|++.||.|||   +.+|+||||||+||+++.   ++.+||
T Consensus       102 ~~~~lv~e~~~~~~L~~~~~~~~~---~~~~~~~~~~i~~ql~~~L~~LH---~~givH~Dikp~NIl~~~~~~~~~~kL  175 (327)
T 3lm5_A          102 SEIILILEYAAGGEIFSLCLPELA---EMVSENDVIRLIKQILEGVYYLH---QNNIVHLDLKPQNILLSSIYPLGDIKI  175 (327)
T ss_dssp             SEEEEEEECCTTEEGGGGGSSCC----CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESCBTTBCCEEE
T ss_pred             CeEEEEEEecCCCcHHHHHHHhcc---cCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCChHHEEEecCCCCCcEEE
Confidence            999999999999999999865432   26999999999999999999999   899999999999999987   789999


Q ss_pred             ecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          217 FDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       217 ~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      +|||++.........   ....||+.|+|||.+.+..++.++||||||+++|+|+||+.||...
T Consensus       176 ~Dfg~a~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~  236 (327)
T 3lm5_A          176 VDFGMSRKIGHACEL---REIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGE  236 (327)
T ss_dssp             CCGGGCEEC------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             eeCccccccCCcccc---ccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            999999876543322   4456999999999999999999999999999999999999999754

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=1.1e-41  Score=302.75  Aligned_cols=204  Identities=15%  Similarity=0.147  Sum_probs=159.5

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHH-HHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKF-SINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~-~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      ..++|.+.+.||+|+||.||+|.+  +++.||+|++........... +..+...++.++||||+++++++.+.+..++|
T Consensus         5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv   84 (290)
T 3fme_A            5 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWIC   84 (290)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEE
T ss_pred             cHHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEE
Confidence            456799999999999999999999  889999999986644433333 44555568888999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPR-PIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~-~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      |||++ |+|.+++...... ...+++..+..++.|++.||.|||   +. +|+||||||+||+++.++.+||+|||++..
T Consensus        85 ~e~~~-~~l~~~l~~~~~~-~~~~~~~~~~~i~~qi~~~l~~lH---~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~  159 (290)
T 3fme_A           85 MELMD-TSLDKFYKQVIDK-GQTIPEDILGKIAVSIVKALEHLH---SKLSVIHRDVKPSNVLINALGQVKMCDFGISGY  159 (290)
T ss_dssp             EECCS-EEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHHHHHH---HHSCCCCCCCSGGGCEECTTCCEEBCCC-----
T ss_pred             Eehhc-cchHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHh---hcCCeecCCCCHHHEEECCCCCEEEeecCCccc
Confidence            99998 5888777541100 026999999999999999999999   77 999999999999999999999999999987


Q ss_pred             cCCCCceeeeecccccCCccccccc----ccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          225 IPEGETHIITRSRFGAWTYSAPEYK----RGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       225 ~~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .......   ....||+.|+|||.+    .+..++.++||||||+++|+|+||+.||...
T Consensus       160 ~~~~~~~---~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  216 (290)
T 3fme_A          160 LVDDVAK---DIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSW  216 (290)
T ss_dssp             -------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCC
T ss_pred             ccccccc---cccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCcccc
Confidence            6544322   344689999999996    4556899999999999999999999999753

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=1.1e-41  Score=322.11  Aligned_cols=194  Identities=19%  Similarity=0.300  Sum_probs=156.4

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecC-----Cc
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLET-----PI  141 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~  141 (338)
                      .++|.+.+.||+|+||.||+|.+  +++.||+|++.... .....+.+.+|+.+|++++||||+++++++...     ..
T Consensus        52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~  131 (458)
T 3rp9_A           52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE  131 (458)
T ss_dssp             CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence            46799999999999999999998  78899999997653 344567899999999999999999999999543     56


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCC
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSE  221 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~  221 (338)
                      .|+||||+. ++|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+
T Consensus       132 ~~lv~e~~~-~~L~~~~~~~~-----~l~~~~~~~~~~qi~~aL~~LH---~~~iiHrDlKp~NILl~~~~~~kl~DFGl  202 (458)
T 3rp9_A          132 LYVVLEIAD-SDFKKLFRTPV-----YLTELHIKTLLYNLLVGVKYVH---SAGILHRDLKPANCLVNQDCSVKVCDFGL  202 (458)
T ss_dssp             EEEEECCCS-EEHHHHHHSSC-----CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTT
T ss_pred             EEEEEeccc-cchhhhcccCC-----CCCHHHHHHHHHHHHHHHHHHH---hCCcCCCCCChhhEEECCCCCEeeccccc
Confidence            899999986 79999997654     5999999999999999999999   89999999999999999999999999999


Q ss_pred             CcccCCCCce-------------------------eeeecccccCCccccccc-ccCCCCccchHHHHHHHHHHHHh
Q 038823          222 SISIPEGETH-------------------------IITRSRFGAWTYSAPEYK-RGGVFNEKLDVYTFSTVLLELLT  272 (338)
Q Consensus       222 a~~~~~~~~~-------------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~s~Gv~l~el~t  272 (338)
                      ++........                         .......||+.|+|||++ ....++.++|||||||++|||+|
T Consensus       203 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~ellt  279 (458)
T 3rp9_A          203 ARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLN  279 (458)
T ss_dssp             CBCTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHT
T ss_pred             chhccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHH
Confidence            9876432110                         112445789999999976 45669999999999999999999

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=1.9e-41  Score=311.42  Aligned_cols=204  Identities=21%  Similarity=0.254  Sum_probs=177.8

Q ss_pred             HHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCc-------hHHHHHHHHHHHHhcc-CCcceeeeeee
Q 038823           66 LEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSD-------SACKFSINNIVYAAQM-DHKHILKLIGC  135 (338)
Q Consensus        66 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~-------~~~~~~~~e~~~l~~l-~h~niv~l~~~  135 (338)
                      .....++|.+.+.||+|+||.||+|.+  +|+.||||++......       ...+.+.+|+.+++++ +||||++++++
T Consensus        89 ~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~  168 (365)
T 2y7j_A           89 AKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDS  168 (365)
T ss_dssp             HHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEE
T ss_pred             hhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEE
Confidence            344567899999999999999999998  6899999998754311       1245678999999999 79999999999


Q ss_pred             eecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceE
Q 038823          136 CLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAK  215 (338)
Q Consensus       136 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~k  215 (338)
                      +...+..++||||+++++|.+++....     .+++..+..++.||+.||.|||   +.+|+|+||||+||+++.++.+|
T Consensus       169 ~~~~~~~~lv~e~~~g~~L~~~l~~~~-----~l~~~~~~~i~~qi~~~L~~LH---~~gi~H~Dlkp~NIl~~~~~~ik  240 (365)
T 2y7j_A          169 YESSSFMFLVFDLMRKGELFDYLTEKV-----ALSEKETRSIMRSLLEAVSFLH---ANNIVHRDLKPENILLDDNMQIR  240 (365)
T ss_dssp             EEBSSEEEEEECCCTTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEE
T ss_pred             EeeCCEEEEEEEeCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEE
Confidence            999999999999999999999997653     5999999999999999999999   89999999999999999999999


Q ss_pred             EecCCCCcccCCCCceeeeecccccCCccccccccc------CCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          216 LFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRG------GVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       216 l~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      |+|||++.........   ....||+.|+|||++.+      ..++.++|||||||++|+|+||+.||...
T Consensus       241 l~DfG~~~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~  308 (365)
T 2y7j_A          241 LSDFGFSCHLEPGEKL---RELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHR  308 (365)
T ss_dssp             ECCCTTCEECCTTCCB---CCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             EEecCcccccCCCccc---ccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCC
Confidence            9999999876654322   45679999999999863      35889999999999999999999999753

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=1.9e-42  Score=306.01  Aligned_cols=205  Identities=17%  Similarity=0.212  Sum_probs=173.6

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeee--cCCcceE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCL--ETPIPIL  144 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~--~~~~~~l  144 (338)
                      .++|.+.+.||+|+||.||+|..  +++.||+|.+.... .....+.+.+|+.++++++||||+++++++.  ..+..++
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   84 (279)
T 2w5a_A            5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI   84 (279)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred             hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence            46788999999999999999999  78899999997543 4455677899999999999999999999875  4567899


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC-----eeecCCCCCceeeCCCCceEEecC
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRP-----IVFGNLISLCILFNEENVAKLFDF  219 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~-----iiH~dik~~Nill~~~~~~kl~Df  219 (338)
                      ||||+++++|.+++...... ...+++..++.++.|++.||.|||   +.+     |+|+||||+||+++.++.+||+||
T Consensus        85 v~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lH---~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~df  160 (279)
T 2w5a_A           85 VMEYCEGGDLASVITKGTKE-RQYLDEEFVLRVMTQLTLALKECH---RRSDGGHTVLHRDLKPANVFLDGKQNVKLGDF  160 (279)
T ss_dssp             EEECCTTEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHHHHHH---HHC------CCCCCSGGGEEECSSSCEEECCC
T ss_pred             EEeCCCCCCHHHHHHhhccc-CCCCCHHHHHHHHHHHHHHHHHHh---cccCCCCeeEEeccchhhEEEcCCCCEEEecC
Confidence            99999999999999753211 125999999999999999999999   777     999999999999999999999999


Q ss_pred             CCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          220 SESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       220 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      |++.........  .....||..|+|||.+.+..++.++||||||+++|+|+||+.||...
T Consensus       161 g~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  219 (279)
T 2w5a_A          161 GLARILNHDTSF--AKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAF  219 (279)
T ss_dssp             CHHHHC---CHH--HHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             chheeecccccc--ccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCccc
Confidence            998776543221  13446899999999999888999999999999999999999999854

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=8.1e-42  Score=311.66  Aligned_cols=205  Identities=20%  Similarity=0.246  Sum_probs=169.1

Q ss_pred             HHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCc----hHHHHHHHHHHHHhccCCcceeeeeeeeecCC
Q 038823           67 EIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSD----SACKFSINNIVYAAQMDHKHILKLIGCCLETP  140 (338)
Q Consensus        67 ~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~  140 (338)
                      ....++|.+.+.||+|+||.||+|.+  +++.||+|.+......    ...+.+.+|+.++++++||||+++++++.+.+
T Consensus         6 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   85 (346)
T 1ua2_A            6 KSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKS   85 (346)
T ss_dssp             -------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTT
T ss_pred             HHHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCC
Confidence            34456799999999999999999998  6889999998754221    11246789999999999999999999999999


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                      ..++||||+++ +|.+++.....    .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||
T Consensus        86 ~~~lv~e~~~~-~l~~~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg  157 (346)
T 1ua2_A           86 NISLVFDFMET-DLEVIIKDNSL----VLTPSHIKAYMLMTLQGLEYLH---QHWILHRDLKPNNLLLDENGVLKLADFG  157 (346)
T ss_dssp             CCEEEEECCSE-EHHHHHTTCCS----SCCSSHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCCG
T ss_pred             ceEEEEEcCCC-CHHHHHHhcCc----CCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCCHHHEEEcCCCCEEEEecc
Confidence            99999999994 89998876543    6889999999999999999999   8999999999999999999999999999


Q ss_pred             CCcccCCCCceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          221 ESISIPEGETHIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ++.........  .....||+.|+|||.+.+. .++.++|||||||++|||++|.+||....
T Consensus       158 ~a~~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~  217 (346)
T 1ua2_A          158 LAKSFGSPNRA--YTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDS  217 (346)
T ss_dssp             GGSTTTSCCCC--CCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             cceeccCCccc--CCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCC
Confidence            99876543221  1445689999999998654 48999999999999999999999997643

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=1.5e-41  Score=312.00  Aligned_cols=205  Identities=16%  Similarity=0.196  Sum_probs=177.1

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecC-----C
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLET-----P  140 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~  140 (338)
                      ...++|.+.+.||+|+||.||+|.+  ++..||+|++.........+.+.+|+.++++++||||+++++++...     .
T Consensus        24 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~  103 (364)
T 3qyz_A           24 DVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMK  103 (364)
T ss_dssp             CCTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCC
T ss_pred             cccccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccc
Confidence            4456899999999999999999998  78899999998665556668899999999999999999999998754     3


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                      ..++||||+. |+|.+++...      .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||
T Consensus       104 ~~~iv~e~~~-~~L~~~l~~~------~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg  173 (364)
T 3qyz_A          104 DVYIVQDLME-TDLYKLLKTQ------HLSNDHICYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFG  173 (364)
T ss_dssp             CEEEEEECCS-EEHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCT
T ss_pred             eEEEEEcccC-cCHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCChHhEEECCCCCEEEEeCc
Confidence            6899999999 6999998764      5899999999999999999999   8999999999999999999999999999


Q ss_pred             CCcccCCCCcee-eeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          221 ESISIPEGETHI-ITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       221 ~a~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ++.......... ......||+.|+|||.+.+ ..++.++|||||||++|+|+||+.||.....
T Consensus       174 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~  237 (364)
T 3qyz_A          174 LARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHY  237 (364)
T ss_dssp             TCEECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSG
T ss_pred             ceEecCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCCh
Confidence            998765432211 1134578999999998654 4589999999999999999999999986544

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=2e-41  Score=318.10  Aligned_cols=199  Identities=18%  Similarity=0.259  Sum_probs=168.9

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecC-----Cc
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLET-----PI  141 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~  141 (338)
                      .++|.+.+.||+|+||.||+|.+  ++..||+|++.... .....+.+.+|+.+|++++|+||+++++++...     +.
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  104 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE  104 (432)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence            56899999999999999999998  78999999997653 344567899999999999999999999999766     56


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCC
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSE  221 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~  221 (338)
                      .|+||||++ ++|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+
T Consensus       105 ~~lv~e~~~-~~L~~~~~~~~-----~l~~~~~~~i~~qil~aL~~LH---~~givHrDlkp~NILl~~~~~~kL~DFGl  175 (432)
T 3n9x_A          105 LYIVLEIAD-SDLKKLFKTPI-----FLTEEHIKTILYNLLLGENFIH---ESGIIHRDLKPANCLLNQDCSVKVCDFGL  175 (432)
T ss_dssp             EEEEEECCS-EEHHHHHHSSC-----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred             EEEEEecCC-cCHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHeEECCCCCEEEccCCC
Confidence            899999998 69999997653     5999999999999999999999   89999999999999999999999999999


Q ss_pred             CcccCCCCce--------------------eeeecccccCCccccccc-ccCCCCccchHHHHHHHHHHHHhCCCCc
Q 038823          222 SISIPEGETH--------------------IITRSRFGAWTYSAPEYK-RGGVFNEKLDVYTFSTVLLELLTGQSTR  277 (338)
Q Consensus       222 a~~~~~~~~~--------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~s~Gv~l~el~tG~~p~  277 (338)
                      ++........                    .......||+.|+|||.+ ....++.++|||||||++|||++|..||
T Consensus       176 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~  252 (432)
T 3n9x_A          176 ARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSH  252 (432)
T ss_dssp             CEEC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTT
T ss_pred             cccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhccccc
Confidence            9876543211                    112456789999999986 5566999999999999999999865544

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=9e-43  Score=315.42  Aligned_cols=203  Identities=20%  Similarity=0.203  Sum_probs=177.5

Q ss_pred             hcCCCcCCccccCCCceEEEEEE------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeee--cCCc
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW------QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCL--ETPI  141 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~--~~~~  141 (338)
                      .++|.+.+.||+|+||.||+|.+      ++..||+|++... .....+.+.+|+.++++++|+||+++++++.  +.+.
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~  100 (327)
T 3lxl_A           22 ERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHS-GPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQS  100 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSC-CHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCE
T ss_pred             hhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccC-CHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCce
Confidence            35788899999999999999984      6789999999865 4555577999999999999999999999886  4556


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCC
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSE  221 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~  221 (338)
                      .++||||+++++|.+++.....    .+++..++.++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||+
T Consensus       101 ~~lv~e~~~~~~L~~~l~~~~~----~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~  173 (327)
T 3lxl_A          101 LRLVMEYLPSGCLRDFLQRHRA----RLDASRLLLYSSQICKGMEYLG---SRRCVHRDLAARNILVESEAHVKIADFGL  173 (327)
T ss_dssp             EEEEEECCTTCBHHHHHHHHGG----GCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCGGG
T ss_pred             EEEEEeecCCCCHHHHHHhccc----CCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChhhEEECCCCCEEEccccc
Confidence            8999999999999999976442    6999999999999999999999   89999999999999999999999999999


Q ss_pred             CcccCCCCce-eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          222 SISIPEGETH-IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       222 a~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      +......... .......||..|+|||.+.+..++.++||||||+++|+|++|+.||...
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~  233 (327)
T 3lxl_A          174 AKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSP  233 (327)
T ss_dssp             CEECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSH
T ss_pred             ceecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccc
Confidence            9877654332 2224455888899999999888999999999999999999999998743

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=5.1e-42  Score=314.66  Aligned_cols=209  Identities=20%  Similarity=0.198  Sum_probs=172.5

Q ss_pred             CHHHHHHhhcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCc----------hHHHHHHHHHHHHhccCCccee
Q 038823           62 SAKELEIATNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSD----------SACKFSINNIVYAAQMDHKHIL  130 (338)
Q Consensus        62 ~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~----------~~~~~~~~e~~~l~~l~h~niv  130 (338)
                      ...++....++|.+.+.||+|+||.||+|.. ++..||+|++......          ...+.+.+|+.++++++||||+
T Consensus        13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv   92 (362)
T 3pg1_A           13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL   92 (362)
T ss_dssp             HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred             HHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence            3567888899999999999999999999998 8899999998654321          2247789999999999999999


Q ss_pred             eeeeeeec-----CCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCc
Q 038823          131 KLIGCCLE-----TPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLC  205 (338)
Q Consensus       131 ~l~~~~~~-----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~N  205 (338)
                      ++++++..     ....++||||++ |+|.+.+.....    .+++..+..++.|++.||.|||   +.+|+||||||+|
T Consensus        93 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~N  164 (362)
T 3pg1_A           93 GLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRI----VISPQHIQYFMYHILLGLHVLH---EAGVVHRDLHPGN  164 (362)
T ss_dssp             CCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTS----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGG
T ss_pred             ceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhccc----CCCHHHHHHHHHHHHHHHHHHH---HCcCEecCCChHH
Confidence            99999854     335799999999 789888876543    6999999999999999999999   8999999999999


Q ss_pred             eeeCCCCceEEecCCCCcccCCCCceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          206 ILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       206 ill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      |+++.++.+||+|||++.........   ....||+.|+|||.+.+ ..++.++|||||||++|+|+||+.||....
T Consensus       165 Il~~~~~~~kl~Dfg~~~~~~~~~~~---~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~  238 (362)
T 3pg1_A          165 ILLADNNDITICDFNLAREDTADANK---THYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGST  238 (362)
T ss_dssp             EEECTTCCEEECCTTC------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             EEEcCCCCEEEEecCccccccccccc---ceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCC
Confidence            99999999999999999765443222   44568999999999876 669999999999999999999999997643

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=9.1e-42  Score=302.45  Aligned_cols=200  Identities=13%  Similarity=0.166  Sum_probs=172.4

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcceE
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~l  144 (338)
                      ..++|.+.+.||+|+||.||+|.+  +++.||+|.+.... .......+.+|+..+..+ +||||+++++++.+.+..++
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~l   88 (289)
T 1x8b_A            9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLI   88 (289)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEE
T ss_pred             ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEE
Confidence            456799999999999999999999  78999999997653 344567788999999999 89999999999999999999


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC-------------
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE-------------  211 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~-------------  211 (338)
                      ||||+++++|.+++...... ...+++..+..++.|++.||.|||   +.+|+||||||+||+++.+             
T Consensus        89 v~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~  164 (289)
T 1x8b_A           89 QNEYCNGGSLADAISENYRI-MSYFKEAELKDLLLQVGRGLRYIH---SMSLVHMDIKPSNIFISRTSIPNAASEEGDED  164 (289)
T ss_dssp             EEECCTTCBHHHHHHHHHHH-TCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEC---------------
T ss_pred             EEEecCCCcHHHHHHhhccc-ccCCCHHHHHHHHHHHHHHHHHHH---hCCEeecCCCHHHEEEcCCCCCcccccccccc
Confidence            99999999999999764210 015899999999999999999999   8999999999999999844             


Q ss_pred             ------CceEEecCCCCcccCCCCceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcC
Q 038823          212 ------NVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRD  278 (338)
Q Consensus       212 ------~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~  278 (338)
                            ..+||+|||.+......      ....||..|+|||.+.+. .++.++||||||+++|+|++|.+|+.
T Consensus       165 ~~~~~~~~~kl~Dfg~~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~  232 (289)
T 1x8b_A          165 DWASNKVMFKIGDLGHVTRISSP------QVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPR  232 (289)
T ss_dssp             -----CCCEEECCCTTCEETTCS------CCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCS
T ss_pred             cccCCceEEEEcccccccccCCc------cccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCc
Confidence                  47999999999876553      234589999999998766 56789999999999999999998765

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=2.7e-41  Score=301.04  Aligned_cols=248  Identities=14%  Similarity=0.106  Sum_probs=193.6

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeee-ecCCcceEE
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC-LETPIPILV  145 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~-~~~~~~~lv  145 (338)
                      ..++|.+.+.||+|+||.||+|.+  +++.||+|.+......   +.+.+|+.+++.++|++++..+.++ .+.+..++|
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv   83 (296)
T 3uzp_A            7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH---PQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMV   83 (296)
T ss_dssp             ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSSC---CHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEE
T ss_pred             eccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcch---hHHHHHHHHHHHhhcCCCCCccccccCCCCceEEE
Confidence            356899999999999999999997  8999999998754322   3578999999999988876666555 567778999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceee---CCCCceEEecCCCC
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILF---NEENVAKLFDFSES  222 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill---~~~~~~kl~Dfg~a  222 (338)
                      |||+ +++|.+++.....    .+++..+..++.|++.||.|||   +.+|+||||||+||++   +.++.+||+|||++
T Consensus        84 ~e~~-~~~L~~~~~~~~~----~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~  155 (296)
T 3uzp_A           84 MELL-GPSLEDLFNFCSR----KFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLA  155 (296)
T ss_dssp             EECC-CCBHHHHHHHTTT----CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECCGGGTTCEEECCCTTC
T ss_pred             EEec-CCCHHHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCc
Confidence            9999 7999999975443    6999999999999999999999   8999999999999999   48889999999999


Q ss_pred             cccCCCCcee-----eeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHHHHHHH
Q 038823          223 ISIPEGETHI-----ITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYL  297 (338)
Q Consensus       223 ~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~~~~~~  297 (338)
                      ..........     ......||+.|+|||.+.+..++.++||||||+++|||+||+.||...........+........
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~  235 (296)
T 3uzp_A          156 KKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKM  235 (296)
T ss_dssp             EECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhccccc
Confidence            8765543211     11455799999999999999999999999999999999999999987554333232322222211


Q ss_pred             h----------cCccccccccccccCcCCcccHHHHHHHH
Q 038823          298 Q----------NNRFTEIADPIIVQDLSCTETEHQFQACA  327 (338)
Q Consensus       298 ~----------~~~~~~~~d~~l~~~~~~~~~~~~~~~~~  327 (338)
                      .          ...+.+++..++..+|..|++..++.+.+
T Consensus       236 ~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l  275 (296)
T 3uzp_A          236 STPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLF  275 (296)
T ss_dssp             HSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHH
T ss_pred             CCchHHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHH
Confidence            1          12345555666666666666655554444

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=3.7e-41  Score=307.76  Aligned_cols=203  Identities=17%  Similarity=0.235  Sum_probs=173.0

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecC--------
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLET--------  139 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--------  139 (338)
                      ++|.+.+.||+|+||.||+|.+  +++.||+|++.... .......+.+|+.++++++||||+++++++...        
T Consensus        17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   96 (351)
T 3mi9_A           17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCK   96 (351)
T ss_dssp             GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------
T ss_pred             cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccCC
Confidence            5799999999999999999999  78899999986543 222345678999999999999999999999763        


Q ss_pred             CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecC
Q 038823          140 PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDF  219 (338)
Q Consensus       140 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Df  219 (338)
                      +..++||||++ ++|.+.+.....    .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+||
T Consensus        97 ~~~~lv~e~~~-~~l~~~l~~~~~----~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~kl~Df  168 (351)
T 3mi9_A           97 GSIYLVFDFCE-HDLAGLLSNVLV----KFTLSEIKRVMQMLLNGLYYIH---RNKILHRDMKAANVLITRDGVLKLADF  168 (351)
T ss_dssp             CEEEEEEECCS-EEHHHHHHCTTS----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCC
T ss_pred             ceEEEEEeccC-CCHHHHHhhccC----CCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCHHHEEEcCCCCEEEccc
Confidence            46899999999 588888876543    6999999999999999999999   899999999999999999999999999


Q ss_pred             CCCcccCCCCc--eeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          220 SESISIPEGET--HIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       220 g~a~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      |++........  ........||+.|+|||.+.+ ..++.++|||||||++|+|+||+.||....
T Consensus       169 g~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~  233 (351)
T 3mi9_A          169 GLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNT  233 (351)
T ss_dssp             TTCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             hhcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCC
Confidence            99987653221  111245568999999998876 458999999999999999999999998643

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=4.1e-41  Score=309.86  Aligned_cols=198  Identities=17%  Similarity=0.210  Sum_probs=165.3

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCC------
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETP------  140 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~------  140 (338)
                      .++|.+.+.||+|+||.||+|..  +++.||+|++.... .....+.+.+|+.+++.++||||+++++++...+      
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~  103 (371)
T 2xrw_A           24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ  103 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred             hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence            46799999999999999999998  78999999997643 3445677899999999999999999999997654      


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                      ..++||||++ ++|.+.+..       .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||
T Consensus       104 ~~~lv~e~~~-~~l~~~~~~-------~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg  172 (371)
T 2xrw_A          104 DVYIVMELMD-ANLCQVIQM-------ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFG  172 (371)
T ss_dssp             EEEEEEECCS-EEHHHHHHS-------CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCCC
T ss_pred             ceEEEEEcCC-CCHHHHHhh-------ccCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEEEee
Confidence            6799999998 588888853       4889999999999999999999   8999999999999999999999999999


Q ss_pred             CCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          221 ESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ++........   .....||+.|+|||.+.+..++.++|||||||++|+|+||+.||....
T Consensus       173 ~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~  230 (371)
T 2xrw_A          173 LARTAGTSFM---MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTD  230 (371)
T ss_dssp             C-------------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             cccccccccc---cCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC
Confidence            9987654321   144578999999999999899999999999999999999999997643

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=2.7e-42  Score=337.71  Aligned_cols=196  Identities=19%  Similarity=0.250  Sum_probs=165.9

Q ss_pred             CccccCCCceEEEEEE----CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCC
Q 038823           77 KFIKQDSTYKLYKGFW----QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEY  151 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~----~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~  151 (338)
                      +.||+|+||.||+|.+    .+..||||+++... .....+.+.+|+.+|++++||||+++++++.. +..++||||+++
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~  453 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL  453 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence            3699999999999976    45789999998653 33446789999999999999999999999964 468999999999


Q ss_pred             CCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCce
Q 038823          152 TTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH  231 (338)
Q Consensus       152 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~  231 (338)
                      |+|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+++........
T Consensus       454 g~L~~~l~~~~-----~l~~~~~~~i~~qi~~~L~yLH---~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~  525 (635)
T 4fl3_A          454 GPLNKYLQQNR-----HVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY  525 (635)
T ss_dssp             EEHHHHHHHCT-----TCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC----
T ss_pred             CCHHHHHhhCC-----CCCHHHHHHHHHHHHHHHHHHH---HCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccc
Confidence            99999997654     5999999999999999999999   899999999999999999999999999999877554322


Q ss_pred             -eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          232 -IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       232 -~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                       .......+|+.|+|||++.+..++.++|||||||++|||+| |+.||....
T Consensus       526 ~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~  577 (635)
T 4fl3_A          526 YKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK  577 (635)
T ss_dssp             ---------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC
T ss_pred             cccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence             11233456789999999999999999999999999999998 999998644

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=6.1e-41  Score=299.14  Aligned_cols=202  Identities=19%  Similarity=0.229  Sum_probs=176.5

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC--------chHHHHHHHHHHHHhccC-Ccceeeeeeee
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS--------DSACKFSINNIVYAAQMD-HKHILKLIGCC  136 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~--------~~~~~~~~~e~~~l~~l~-h~niv~l~~~~  136 (338)
                      ...++|.+.+.||+|+||.||+|.+  +++.||+|.+.....        ....+.+.+|+.+++++. ||||+++++++
T Consensus        14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~   93 (298)
T 1phk_A           14 GFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTY   93 (298)
T ss_dssp             -CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred             chhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeee
Confidence            4457899999999999999999999  789999999965421        122456789999999996 99999999999


Q ss_pred             ecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEE
Q 038823          137 LETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKL  216 (338)
Q Consensus       137 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl  216 (338)
                      .+.+..++||||+++++|.+++....     .+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.+||
T Consensus        94 ~~~~~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl  165 (298)
T 1phk_A           94 ETNTFFFLVFDLMKKGELFDYLTEKV-----TLSEKETRKIMRALLEVICALH---KLNIVHRDLKPENILLDDDMNIKL  165 (298)
T ss_dssp             ECSSEEEEEEECCTTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEE
T ss_pred             ccCCeEEEEEeccCCCcHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEEcCCCcEEE
Confidence            99999999999999999999997653     6999999999999999999999   899999999999999999999999


Q ss_pred             ecCCCCcccCCCCceeeeecccccCCcccccccc------cCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          217 FDFSESISIPEGETHIITRSRFGAWTYSAPEYKR------GGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       217 ~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      +|||++.........   ....||+.|+|||.+.      ...++.++||||||+++|+|++|+.||...
T Consensus       166 ~dfg~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~  232 (298)
T 1phk_A          166 TDFGFSCQLDPGEKL---REVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHR  232 (298)
T ss_dssp             CCCTTCEECCTTCCB---CCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ecccchhhcCCCccc---ccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCc
Confidence            999999876544322   4456899999999885      456889999999999999999999999753

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.5e-42  Score=312.41  Aligned_cols=202  Identities=20%  Similarity=0.254  Sum_probs=175.7

Q ss_pred             hcCCCcCCccccCCCceEEEEEE------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCC--c
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW------QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETP--I  141 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~--~  141 (338)
                      .++|.+.+.||+|+||.||+|.+      ++..||+|++... .....+.+.+|+.++++++||||+++++++...+  .
T Consensus        40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  118 (326)
T 2w1i_A           40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS-TEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRN  118 (326)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSC-CSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----C
T ss_pred             HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccC-CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCc
Confidence            45688889999999999999984      6889999999865 4455678999999999999999999999987644  7


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCC
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSE  221 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~  221 (338)
                      .++||||+++++|.+++.....    .+++..++.++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||+
T Consensus       119 ~~lv~e~~~~~~L~~~l~~~~~----~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~~kL~Dfg~  191 (326)
T 2w1i_A          119 LKLIMEYLPYGSLRDYLQKHKE----RIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGL  191 (326)
T ss_dssp             CEEEECCCTTCBHHHHHHHSTT----SSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTT
T ss_pred             eEEEEECCCCCCHHHHHHhccc----CCCHHHHHHHHHHHHHHHHHHH---hCCEeccCCCcceEEEcCCCcEEEecCcc
Confidence            8999999999999999987643    6999999999999999999999   89999999999999999999999999999


Q ss_pred             CcccCCCCceee-eecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          222 SISIPEGETHII-TRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       222 a~~~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      +........... .....++..|+|||.+.+..++.++||||||+++|||+||..||..
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~  250 (326)
T 2w1i_A          192 TKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKS  250 (326)
T ss_dssp             CEECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGS
T ss_pred             hhhccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCC
Confidence            987765433221 1334577789999999888899999999999999999999999864

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=1.5e-41  Score=306.75  Aligned_cols=202  Identities=20%  Similarity=0.210  Sum_probs=170.0

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC-------chHHHHHHHHHHHHhccCCcceeeeeeeeecC
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS-------DSACKFSINNIVYAAQMDHKHILKLIGCCLET  139 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~-------~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~  139 (338)
                      ..++|.+.+.||+|+||.||+|.+  +++.||+|.+.....       ......+.+|+.++++++||||+++++++...
T Consensus         8 l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~   87 (322)
T 2ycf_A            8 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE   87 (322)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESS
T ss_pred             hhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCC
Confidence            346799999999999999999998  789999999875421       12234578999999999999999999998765


Q ss_pred             CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCc---eEE
Q 038823          140 PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENV---AKL  216 (338)
Q Consensus       140 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~---~kl  216 (338)
                      + .++||||+++++|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.   +||
T Consensus        88 ~-~~lv~e~~~~~~L~~~~~~~~-----~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl  158 (322)
T 2ycf_A           88 D-YYIVLELMEGGELFDKVVGNK-----RLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKI  158 (322)
T ss_dssp             S-EEEEEECCTTEETHHHHSTTC-----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSSSCCEEE
T ss_pred             c-eEEEEecCCCCcHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEecCCCCCeEEE
Confidence            4 899999999999999987653     6999999999999999999999   899999999999999987654   999


Q ss_pred             ecCCCCcccCCCCceeeeecccccCCcccccccc---cCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          217 FDFSESISIPEGETHIITRSRFGAWTYSAPEYKR---GGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       217 ~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      +|||++.........   ....||+.|+|||.+.   ...++.++||||||+++|+|++|+.||.....
T Consensus       159 ~Dfg~~~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~  224 (322)
T 2ycf_A          159 TDFGHSKILGETSLM---RTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRT  224 (322)
T ss_dssp             CCCTTCEECCCCHHH---HHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTC
T ss_pred             ccCccceeccccccc---ccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccch
Confidence            999999876543221   3456899999999874   46689999999999999999999999976443

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=7.1e-42  Score=316.25  Aligned_cols=203  Identities=19%  Similarity=0.228  Sum_probs=166.8

Q ss_pred             HHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecC----
Q 038823           66 LEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLET----  139 (338)
Q Consensus        66 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~----  139 (338)
                      ++...++|.+.+.||+|+||.||+|.+  ++..||+|++......     ..+|+.+++.++||||+++++++...    
T Consensus         2 l~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~~-----~~~E~~il~~l~hpnIv~l~~~~~~~~~~~   76 (383)
T 3eb0_A            2 LETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRY-----KNRELDIMKVLDHVNIIKLVDYFYTTGDEE   76 (383)
T ss_dssp             ----CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTTS-----CCHHHHHHTTCCCTTBCCEEEEEEEC----
T ss_pred             CccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcch-----HHHHHHHHHHcCCCCccchhheeeecCccc
Confidence            345677899999999999999999998  8899999998654222     24799999999999999999998543    


Q ss_pred             ----------------------------------CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHH
Q 038823          140 ----------------------------------PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHAL  185 (338)
Q Consensus       140 ----------------------------------~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l  185 (338)
                                                        ...++||||++ |+|.+.+...... ...+++..+..++.||+.||
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~-~~~l~~~~~~~i~~qi~~aL  154 (383)
T 3eb0_A           77 PKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRS-GRSIPMNLISIYIYQLFRAV  154 (383)
T ss_dssp             ---------------------------------CCEEEEEECCCS-EEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHH
Confidence                                              23789999999 6887776531100 02699999999999999999


Q ss_pred             HHhhcCCCCCeeecCCCCCceeeC-CCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccC-CCCccchHHHH
Q 038823          186 AYLHVGFPRPIVFGNLISLCILFN-EENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTF  263 (338)
Q Consensus       186 ~~LH~~~~~~iiH~dik~~Nill~-~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~  263 (338)
                      .|||   +.+|+||||||+|||++ .++.+||+|||+++........   ....||..|+|||.+.+. .++.++|||||
T Consensus       155 ~~LH---~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~---~~~~~t~~y~aPE~~~~~~~~~~~~Diwsl  228 (383)
T 3eb0_A          155 GFIH---SLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPS---VAYICSRFYRAPELMLGATEYTPSIDLWSI  228 (383)
T ss_dssp             HHHH---TTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSCC---CCCCCCSSCCCHHHHTTCSSCCTHHHHHHH
T ss_pred             HHHH---HCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCCC---cCcccCCCccCHHHhcCCCCCCcchhhhhH
Confidence            9999   99999999999999998 6889999999999876544332   455689999999998765 48999999999


Q ss_pred             HHHHHHHHhCCCCcCCcc
Q 038823          264 STVLLELLTGQSTRDLLR  281 (338)
Q Consensus       264 Gv~l~el~tG~~p~~~~~  281 (338)
                      ||++|||++|+.||....
T Consensus       229 G~il~ell~g~~pf~~~~  246 (383)
T 3eb0_A          229 GCVFGELILGKPLFSGET  246 (383)
T ss_dssp             HHHHHHHHHSSCSSCCSS
T ss_pred             HHHHHHHHhCCCCCCCCC
Confidence            999999999999998643

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=1.2e-41  Score=300.33  Aligned_cols=200  Identities=23%  Similarity=0.231  Sum_probs=168.3

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      .++|.+.+.||+|+||.||+|.+  +++.||+|.+....  .....+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   89 (276)
T 2h6d_A           10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV   89 (276)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence            46788999999999999999998  68999999986432  122346788999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||+++++|.+++....     .+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||++...
T Consensus        90 ~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~  161 (276)
T 2h6d_A           90 MEYVSGGELFDYICKHG-----RVEEMEARRLFQQILSAVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMM  161 (276)
T ss_dssp             EECCCSCBHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHH---HHCSSCCCCCGGGEEECTTSCEEECCCCGGGCC
T ss_pred             EeccCCCcHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChhhEEECCCCCEEEeeccccccc
Confidence            99999999999997654     5899999999999999999999   899999999999999999999999999999876


Q ss_pred             CCCCceeeeecccccCCcccccccccCCC-CccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVF-NEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ......   ....||+.|+|||.+.+..+ +.++||||||+++|+|++|+.||...
T Consensus       162 ~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~  214 (276)
T 2h6d_A          162 SDGEFL---RTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDE  214 (276)
T ss_dssp             CC----------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CCCcce---ecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCC
Confidence            543321   34568999999999987765 68999999999999999999999753

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=4.1e-41  Score=315.51  Aligned_cols=198  Identities=19%  Similarity=0.207  Sum_probs=173.6

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc------CCcceeeeeeeeecCCc
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQM------DHKHILKLIGCCLETPI  141 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l------~h~niv~l~~~~~~~~~  141 (338)
                      ..+|.+.+.||+|+||.||+|.+  +++.||+|++...  ......+.+|+.+++.+      +|+||+++++++...+.
T Consensus        96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~  173 (429)
T 3kvw_A           96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE--KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNH  173 (429)
T ss_dssp             TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC--HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTE
T ss_pred             cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc--cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCe
Confidence            45688999999999999999998  6899999999753  33346677888888877      57799999999999999


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCc--eEEecC
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENV--AKLFDF  219 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~--~kl~Df  219 (338)
                      .++||||+. ++|.+++.....   ..+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.  +||+||
T Consensus       174 ~~lv~e~~~-~~L~~~l~~~~~---~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NILl~~~~~~~vkL~DF  246 (429)
T 3kvw_A          174 ICMTFELLS-MNLYELIKKNKF---QGFSLPLVRKFAHSILQCLDALH---KNRIIHCDLKPENILLKQQGRSGIKVIDF  246 (429)
T ss_dssp             EEEEECCCC-CBHHHHHHHTTT---CCCCHHHHHHHHHHHHHHHHHHH---HHTEECSCCSGGGEEESSTTSCCEEECCC
T ss_pred             EEEEEeccC-CCHHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEccCCCcceEEeec
Confidence            999999997 799999987643   25899999999999999999999   899999999999999999987  999999


Q ss_pred             CCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          220 SESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       220 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      |++.......     ....||+.|+|||++.+..++.++|||||||++|||+||++||....
T Consensus       247 G~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~~  303 (429)
T 3kvw_A          247 GSSCYEHQRV-----YTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGED  303 (429)
T ss_dssp             TTCEETTCCC-----CSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             ccceecCCcc-----cccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCCC
Confidence            9997654432     34578999999999999899999999999999999999999998643

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=9e-41  Score=299.02  Aligned_cols=204  Identities=15%  Similarity=0.157  Sum_probs=171.5

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC---CchHHHHHHHHHHHHhccCCcceeeeeeeee--cCCcc
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY---SDSACKFSINNIVYAAQMDHKHILKLIGCCL--ETPIP  142 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~--~~~~~  142 (338)
                      .++|.+.+.||+|+||.||+|.+  ++..||+|.+....   .....+.+.+|+.++++++|+||+++++++.  +.+..
T Consensus         4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM   83 (305)
T ss_dssp             -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred             ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence            46799999999999999999998  78899999997542   1234577899999999999999999999984  45678


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSES  222 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a  222 (338)
                      ++||||++++ |.+++.....   ..+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++
T Consensus        84 ~lv~e~~~~~-l~~~~~~~~~---~~~~~~~~~~~~~qi~~al~~LH---~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~  156 (305)
T 2wtk_C           84 YMVMEYCVCG-MQEMLDSVPE---KRFPVCQAHGYFCQLIDGLEYLH---SQGIVHKDIKPGNLLLTTGGTLKISALGVA  156 (305)
T ss_dssp             EEEEECCSEE-HHHHHHHSTT---CSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTC
T ss_pred             EEEehhccCC-HHHHHHhCcc---cccCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCcccEEEcCCCcEEeeccccc
Confidence            9999999965 7777765432   26999999999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCCceeeeecccccCCcccccccccCC--CCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          223 ISIPEGETHIITRSRFGAWTYSAPEYKRGGV--FNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       223 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ................||..|+|||.+.+..  .+.++||||||+++|+|++|+.||...
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  216 (305)
T 2wtk_C          157 EALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGD  216 (305)
T ss_dssp             EECCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             cccCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCc
Confidence            8765433322335567999999999987644  478999999999999999999999753

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=3.4e-42  Score=314.02  Aligned_cols=201  Identities=18%  Similarity=0.175  Sum_probs=165.1

Q ss_pred             hcCCCcCCccccCCCceEEEEEE-----CCeEEEEEEeCcCCCch----------HHHHHHHHHHHHhccCCcceeeeee
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW-----QERLISVMKYNESYSDS----------ACKFSINNIVYAAQMDHKHILKLIG  134 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~-----~~~~vaik~~~~~~~~~----------~~~~~~~e~~~l~~l~h~niv~l~~  134 (338)
                      .++|.+.+.||+|+||.||+|.+     ++..+|+|.+.......          ....+.+|+..++.++||||+++++
T Consensus        36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~  115 (345)
T 2v62_A           36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG  115 (345)
T ss_dssp             SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred             CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence            45789999999999999999998     45779999987653211          1123667888999999999999999


Q ss_pred             eeec----CCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC
Q 038823          135 CCLE----TPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE  210 (338)
Q Consensus       135 ~~~~----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~  210 (338)
                      ++..    ....++||||+ +++|.+++....     .+++..++.++.||+.||.|||   +.+|+||||||+|||++.
T Consensus       116 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~  186 (345)
T 2v62_A          116 SGLTEFKGRSYRFMVMERL-GIDLQKISGQNG-----TFKKSTVLQLGIRMLDVLEYIH---ENEYVHGDIKAANLLLGY  186 (345)
T ss_dssp             EEEEESSSCEEEEEEEECE-EEEHHHHCBGGG-----BCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEES
T ss_pred             ccccccCCCcEEEEEEecc-CCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCcCHHHEEEcc
Confidence            9987    67899999999 899999997654     6999999999999999999999   899999999999999998


Q ss_pred             CC--ceEEecCCCCcccCCCCcee-----eeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          211 EN--VAKLFDFSESISIPEGETHI-----ITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       211 ~~--~~kl~Dfg~a~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ++  .+||+|||+++.........     ......||+.|+|||.+.+..++.++|||||||++|||+||+.||..
T Consensus       187 ~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~  262 (345)
T 2v62_A          187 KNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQ  262 (345)
T ss_dssp             SSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGG
T ss_pred             CCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccc
Confidence            87  99999999997764322110     11344689999999999998999999999999999999999999964

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=2.1e-41  Score=299.78  Aligned_cols=196  Identities=19%  Similarity=0.256  Sum_probs=172.1

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeec--------
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLE--------  138 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--------  138 (338)
                      ..++|+..+.||+|+||.||+|.+  +++.||+|.+....     +.+.+|+.++++++||||+++++++..        
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   83 (284)
T 2a19_B            9 FGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN-----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETS   83 (284)
T ss_dssp             HHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS-----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC----
T ss_pred             hccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc-----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccc
Confidence            445689999999999999999999  68999999997542     346789999999999999999998854        


Q ss_pred             --------CCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC
Q 038823          139 --------TPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE  210 (338)
Q Consensus       139 --------~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~  210 (338)
                              ....++||||+++++|.+++.....   ..+++..++.++.|++.||.|||   +.+|+|+||||+||+++.
T Consensus        84 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~  157 (284)
T 2a19_B           84 SKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRG---EKLDKVLALELFEQITKGVDYIH---SKKLINRDLKPSNIFLVD  157 (284)
T ss_dssp             -----CCEEEEEEEEECCCCSCBHHHHHHHGGG---SCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEE
T ss_pred             cccccccCcceEEEEEeccCCCCHHHHHhhccC---CCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCCHHHEEEcC
Confidence                    3457999999999999999975432   26899999999999999999999   899999999999999999


Q ss_pred             CCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcC
Q 038823          211 ENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRD  278 (338)
Q Consensus       211 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~  278 (338)
                      ++.+||+|||++.........   ....||+.|+|||.+.+..++.++||||||+++|+|+||..|+.
T Consensus       158 ~~~~kl~Dfg~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~  222 (284)
T 2a19_B          158 TKQVKIGDFGLVTSLKNDGKR---TRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAF  222 (284)
T ss_dssp             TTEEEECCCTTCEESSCCSCC---CCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHH
T ss_pred             CCCEEECcchhheeccccccc---cccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcch
Confidence            999999999999877654322   34568999999999998889999999999999999999999875

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=3.6e-41  Score=309.68  Aligned_cols=198  Identities=18%  Similarity=0.222  Sum_probs=156.8

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecC------
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLET------  139 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~------  139 (338)
                      ..++|...+.||+|+||.||+|.+  +++.||+|++.... .....+.+.+|+.+++.++||||+++++++...      
T Consensus        27 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~  106 (367)
T 2fst_X           27 VPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF  106 (367)
T ss_dssp             EETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred             CCCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccC
Confidence            346899999999999999999998  78999999997653 344567889999999999999999999998754      


Q ss_pred             CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecC
Q 038823          140 PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDF  219 (338)
Q Consensus       140 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Df  219 (338)
                      ...++|+|++ +++|.+++...      .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+||
T Consensus       107 ~~~~lv~e~~-~~~L~~~~~~~------~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kL~DF  176 (367)
T 2fst_X          107 NDVYLVTHLM-GADLNNIVKCQ------KLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDF  176 (367)
T ss_dssp             CCCEEEEECC-CEECC-----C------CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECC-
T ss_pred             CeEEEEeccc-CCCHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHhhEEECCCCCEEEeec
Confidence            5679999999 58999988652      5999999999999999999999   899999999999999999999999999


Q ss_pred             CCCcccCCCCceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          220 SESISIPEGETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       220 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      |+++......     ....||..|+|||.+.+ ..++.++|||||||++|||+||+.||....
T Consensus       177 G~a~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~  234 (367)
T 2fst_X          177 GLARHTADEM-----TGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTD  234 (367)
T ss_dssp             -------------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             cccccccccC-----CCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            9998754332     44578999999999877 679999999999999999999999998643

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=1.4e-41  Score=307.52  Aligned_cols=206  Identities=16%  Similarity=0.156  Sum_probs=155.4

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHH-HHhccCCcceeeeeeeeecCCcceE
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIV-YAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~-~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      ...++|...+.||+|+||.||+|..  +++.||+|++...........+..|+. +++.++||||+++++++.+.+..++
T Consensus        19 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~l   98 (327)
T 3aln_A           19 FTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWI   98 (327)
T ss_dssp             CCSCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEE
T ss_pred             cCHHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEE
Confidence            3457889999999999999999999  689999999987655555556666766 7788899999999999999999999


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPR-PIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~-~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      ||||++ ++|.+++..........+++..+..++.|++.||.|||   .. +|+||||||+||+++.++.+||+|||++.
T Consensus        99 v~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~  174 (327)
T 3aln_A           99 CMELMS-TSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLK---ENLKIIHRDIKPSNILLDRSGNIKLCDFGISG  174 (327)
T ss_dssp             EECCCS-EEHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHH---HHHSCCCSCCCGGGEEEETTTEEEECCCSSSC
T ss_pred             EEeecC-CChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHh---ccCCEeECCCCHHHEEEcCCCCEEEccCCCce
Confidence            999999 58888776311000126899999999999999999999   77 99999999999999999999999999998


Q ss_pred             ccCCCCceeeeecccccCCccccccc----ccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYK----RGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ........   ....||..|+|||.+    .+..++.++||||||+++|+|+||+.||...
T Consensus       175 ~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  232 (327)
T 3aln_A          175 QLVDSIAK---TRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKW  232 (327)
T ss_dssp             C---------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC
T ss_pred             eccccccc---ccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCc
Confidence            76543221   344689999999998    4566899999999999999999999999753

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=6e-43  Score=322.08  Aligned_cols=201  Identities=9%  Similarity=0.031  Sum_probs=156.2

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC--chHHHHHHHHHHHHhcc--CCcceeeee-------e
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS--DSACKFSINNIVYAAQM--DHKHILKLI-------G  134 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~--~~~~~~~~~e~~~l~~l--~h~niv~l~-------~  134 (338)
                      ....+|...+.||+|+||.||+|.+  +++.||+|++.....  ....+.+.+|+.+++.+  +||||++++       +
T Consensus        59 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d  138 (371)
T 3q60_A           59 QGERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSD  138 (371)
T ss_dssp             CCEEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCE
T ss_pred             CCceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeeh
Confidence            3455688999999999999999998  789999999987642  23456677785544444  699988855       3


Q ss_pred             eeecC-----------------CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHH------HHHHHHHHHHHHHhhcC
Q 038823          135 CCLET-----------------PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHR------LKVAMGIAHALAYLHVG  191 (338)
Q Consensus       135 ~~~~~-----------------~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~------~~i~~~i~~~l~~LH~~  191 (338)
                      ++...                 ...++||||++ |+|.+++...+.    .+++..+      +.++.||+.||.|||  
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~----~~~~~~~~~~~vk~~i~~qi~~aL~~LH--  211 (371)
T 3q60_A          139 AVAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDF----VYVFRGDEGILALHILTAQLIRLAANLQ--  211 (371)
T ss_dssp             EEEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHH----SCCCCHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             heecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhcc----ccchhhhhhhhhHHHHHHHHHHHHHHHH--
Confidence            33322                 23799999999 899999986532    3555566      788899999999999  


Q ss_pred             CCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCceeeeecccccCCccccccccc--CCCCccchHHHHHHHHHH
Q 038823          192 FPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRG--GVFNEKLDVYTFSTVLLE  269 (338)
Q Consensus       192 ~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~Gv~l~e  269 (338)
                       +.+|+||||||+|||++.++.+||+|||+++......     ....+|+.|+|||.+.+  ..++.++|||||||++||
T Consensus       212 -~~~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~e  285 (371)
T 3q60_A          212 -SKGLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRG-----PASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYR  285 (371)
T ss_dssp             -HTTEEETTCSGGGEEECTTSCEEECCGGGEEETTCEE-----EGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHH
T ss_pred             -HCCCccCcCCHHHEEECCCCCEEEEecceeeecCCCc-----cCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHH
Confidence             8999999999999999999999999999998764321     24567799999999987  679999999999999999


Q ss_pred             HHhCCCCcCCcc
Q 038823          270 LLTGQSTRDLLR  281 (338)
Q Consensus       270 l~tG~~p~~~~~  281 (338)
                      |+||+.||....
T Consensus       286 lltg~~Pf~~~~  297 (371)
T 3q60_A          286 VWCLFLPFGLVT  297 (371)
T ss_dssp             HHHSSCSTTBCC
T ss_pred             HHhCCCCCCCcC
Confidence            999999998654

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=1.3e-41  Score=302.27  Aligned_cols=203  Identities=21%  Similarity=0.341  Sum_probs=165.5

Q ss_pred             hcCCCcCCccccCCCceEEEEEE---CC--eEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcc
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW---QE--RLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIP  142 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~---~~--~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~  142 (338)
                      .++|.+.+.||+|+||.||+|.+   ++  ..||+|.+....  .....+.+.+|+.++++++||||+++++++.+.+ .
T Consensus        17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~   95 (291)
T 1u46_A           17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-M   95 (291)
T ss_dssp             GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-C
T ss_pred             hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-c
Confidence            46799999999999999999986   22  268999987543  3345678999999999999999999999998765 8


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSES  222 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a  222 (338)
                      ++||||+++++|.+++.....    .+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||++
T Consensus        96 ~~v~e~~~~~~L~~~l~~~~~----~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~  168 (291)
T 1u46_A           96 KMVTELAPLGSLLDRLRKHQG----HFLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLM  168 (291)
T ss_dssp             EEEEECCTTCBHHHHHHHHGG----GSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTC
T ss_pred             eeeEecccCCCHHHHHHhccC----CcCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEEcCCCCEEEcccccc
Confidence            999999999999999976542    6899999999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCCce-eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          223 ISIPEGETH-IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       223 ~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      ......... .......+|..|+|||.+.+..++.++||||||+++|+|++ |+.||...
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~  228 (291)
T 1u46_A          169 RALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGL  228 (291)
T ss_dssp             EECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             ccccccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccC
Confidence            877654332 22234557888999999988889999999999999999999 99999754

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=1.8e-41  Score=309.85  Aligned_cols=202  Identities=15%  Similarity=0.144  Sum_probs=173.4

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecC-----Cc
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLET-----PI  141 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~  141 (338)
                      ..++|.+.+.||+|+||.||+|.+  +++.||+|.+...........+.+|+.++++++||||+++++++...     ..
T Consensus         9 i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   88 (353)
T 2b9h_A            9 ISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNE   88 (353)
T ss_dssp             SCTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCC
T ss_pred             cccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccce
Confidence            356899999999999999999999  68999999997654555567788999999999999999999988754     67


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCC
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSE  221 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~  221 (338)
                      .++||||+. ++|.+++...      .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||+
T Consensus        89 ~~lv~e~~~-~~L~~~~~~~------~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~  158 (353)
T 2b9h_A           89 VYIIQELMQ-TDLHRVISTQ------MLSDDHIQYFIYQTLRAVKVLH---GSNVIHRDLKPSNLLINSNCDLKVCDFGL  158 (353)
T ss_dssp             EEEEECCCS-EEHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTT
T ss_pred             EEEEEeccC-ccHHHHHhhc------CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEcCCCcEEEEeccc
Confidence            899999998 6999998763      5899999999999999999999   89999999999999999999999999999


Q ss_pred             CcccCCCCcee--------eeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          222 SISIPEGETHI--------ITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       222 a~~~~~~~~~~--------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      +..........        ......||+.|+|||.+.. ..++.++|||||||++|+|++|+.||...
T Consensus       159 a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  226 (353)
T 2b9h_A          159 ARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGR  226 (353)
T ss_dssp             CEECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ccccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            98765432111        1123468999999998764 67899999999999999999999999854

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=3.8e-41  Score=330.74  Aligned_cols=209  Identities=21%  Similarity=0.259  Sum_probs=176.7

Q ss_pred             HHHHHhhcCCCcCCccccCCCceEEEEEE-----CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeec
Q 038823           64 KELEIATNNYDERKFIKQDSTYKLYKGFW-----QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLE  138 (338)
Q Consensus        64 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-----~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~  138 (338)
                      .++....++|.+.+.||+|+||.||+|.+     .+..||+|.+.........+.+.+|+.++++++||||+++++++. 
T Consensus       383 ~~~~i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-  461 (656)
T 2j0j_A          383 RDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-  461 (656)
T ss_dssp             GGTBCCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-
T ss_pred             cccccccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-
Confidence            34445567788889999999999999998     245799999887655666678999999999999999999999985 


Q ss_pred             CCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEec
Q 038823          139 TPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFD  218 (338)
Q Consensus       139 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~D  218 (338)
                      .+..++||||+++|+|.+++.....    .+++..++.++.|++.||.|||   +.+|+||||||+|||++.++.+||+|
T Consensus       462 ~~~~~lv~E~~~~g~L~~~l~~~~~----~l~~~~~~~i~~qi~~aL~~LH---~~givHrDikp~NILl~~~~~vkL~D  534 (656)
T 2j0j_A          462 ENPVWIIMELCTLGELRSFLQVRKF----SLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGD  534 (656)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHTTT----TCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECC
T ss_pred             cCceEEEEEcCCCCcHHHHHHhccC----CCCHHHHHHHHHHHHHHHHHHH---hCCccccccchHhEEEeCCCCEEEEe
Confidence            4568999999999999999986543    6899999999999999999999   89999999999999999999999999


Q ss_pred             CCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          219 FSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       219 fg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      ||+++......... .....+|+.|+|||.+.+..++.++||||||+++|||++ |..||....
T Consensus       535 FG~a~~~~~~~~~~-~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~  597 (656)
T 2j0j_A          535 FGLSRYMEDSTYYK-ASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVK  597 (656)
T ss_dssp             CCCCCSCCC-----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred             cCCCeecCCCccee-ccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCC
Confidence            99998765443222 134457789999999998899999999999999999997 999997543

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=8.3e-41  Score=302.64  Aligned_cols=193  Identities=15%  Similarity=0.191  Sum_probs=170.5

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-Ccceeeeeeeeec--CCcceE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCLE--TPIPIL  144 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~--~~~~~l  144 (338)
                      .++|.+.+.||+|+||.||+|.+  +++.||+|++...    ..+.+.+|+.++++++ ||||+++++++.+  ....++
T Consensus        35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~l  110 (330)
T 3nsz_A           35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV----KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPAL  110 (330)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC----CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEE
T ss_pred             CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc----chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEE
Confidence            35688899999999999999998  7889999998743    2367889999999997 9999999999987  567899


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC-ceEEecCCCCc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN-VAKLFDFSESI  223 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~-~~kl~Dfg~a~  223 (338)
                      ||||+++++|.+++.        .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++ .+||+|||++.
T Consensus       111 v~e~~~~~~l~~~~~--------~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~  179 (330)
T 3nsz_A          111 VFEHVNNTDFKQLYQ--------TLTDYDIRFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAE  179 (330)
T ss_dssp             EEECCCCCCHHHHGG--------GCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             EEeccCchhHHHHHH--------hCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEEcCCCCEEEEEeCCCce
Confidence            999999999999883        4889999999999999999999   89999999999999999776 89999999998


Q ss_pred             ccCCCCceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ........   ....||..|+|||.+.+ ..++.++|||||||++|+|++|+.||...
T Consensus       180 ~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~  234 (330)
T 3nsz_A          180 FYHPGQEY---NVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHG  234 (330)
T ss_dssp             ECCTTCCC---CSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCC
T ss_pred             EcCCCCcc---ccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccC
Confidence            76544332   45568999999999877 66999999999999999999999999643

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=5.6e-41  Score=311.00  Aligned_cols=199  Identities=15%  Similarity=0.200  Sum_probs=171.9

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC--------Ccceeeeeeeee--
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMD--------HKHILKLIGCCL--  137 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~--------h~niv~l~~~~~--  137 (338)
                      .++|.+.+.||+|+||.||+|..  +++.||+|++...  ....+.+.+|+.+++.++        |+||+++++++.  
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~  113 (397)
T 1wak_A           36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA--EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKIS  113 (397)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC--HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEE
T ss_pred             CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC--CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeec
Confidence            46799999999999999999998  7899999999753  344577889999999985        788999999987  


Q ss_pred             --cCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CeeecCCCCCceeeCCCC--
Q 038823          138 --ETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPR-PIVFGNLISLCILFNEEN--  212 (338)
Q Consensus       138 --~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~-~iiH~dik~~Nill~~~~--  212 (338)
                        .....++||||+. ++|.+.+.....   ..+++..+..++.||+.||.|||   +. +|+||||||+|||++.++  
T Consensus       114 ~~~~~~~~lv~e~~~-~~l~~~~~~~~~---~~~~~~~~~~i~~qi~~aL~~lH---~~~givHrDikp~NIll~~~~~~  186 (397)
T 1wak_A          114 GVNGTHICMVFEVLG-HHLLKWIIKSNY---QGLPLPCVKKIIQQVLQGLDYLH---TKCRIIHTDIKPENILLSVNEQY  186 (397)
T ss_dssp             ETTEEEEEEEECCCC-CBHHHHHHHTTT---SCCCHHHHHHHHHHHHHHHHHHH---HTTCEECCCCSGGGEEECCCHHH
T ss_pred             CCCCceEEEEEeccC-ccHHHHHHhccc---CCCCHHHHHHHHHHHHHHHHHHH---HhCCEecCCCCHHHeeEeccchh
Confidence              5567899999995 677766655432   26999999999999999999999   77 999999999999999775  


Q ss_pred             -----------------------------------------------ceEEecCCCCcccCCCCceeeeecccccCCccc
Q 038823          213 -----------------------------------------------VAKLFDFSESISIPEGETHIITRSRFGAWTYSA  245 (338)
Q Consensus       213 -----------------------------------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~a  245 (338)
                                                                     .+||+|||++.......     ....||..|+|
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~~-----~~~~gt~~y~a  261 (397)
T 1wak_A          187 IRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHF-----TEDIQTRQYRS  261 (397)
T ss_dssp             HHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBCS-----CSCCSCGGGCC
T ss_pred             hhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccccC-----ccCCCCCcccC
Confidence                                                           79999999998765432     44568999999


Q ss_pred             ccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          246 PEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       246 PE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ||++.+..++.++|||||||++|||+||+.||.....
T Consensus       262 PE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~  298 (397)
T 1wak_A          262 LEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSG  298 (397)
T ss_dssp             HHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCC
T ss_pred             ChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcc
Confidence            9999998999999999999999999999999986544

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.1e-41  Score=308.73  Aligned_cols=253  Identities=14%  Similarity=0.152  Sum_probs=177.7

Q ss_pred             HHHHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-Ccceeeeeeeee---
Q 038823           64 KELEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCL---  137 (338)
Q Consensus        64 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~---  137 (338)
                      ..+.....+|.+.+.||+|+||.||+|.+  +++.||+|++... .....+.+.+|+.++.++. ||||+++++++.   
T Consensus        21 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~   99 (337)
T 3ll6_A           21 QTVELGELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSN-EEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGK   99 (337)
T ss_dssp             CEEEETTEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEES-SHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECT
T ss_pred             ceeeccCceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCC-chHHHHHHHHHHHHHHHhccCCChhhccccccccc
Confidence            34455566899999999999999999999  8899999998655 4455577899999999996 999999999984   


Q ss_pred             -----cCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--eeecCCCCCceeeCC
Q 038823          138 -----ETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRP--IVFGNLISLCILFNE  210 (338)
Q Consensus       138 -----~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--iiH~dik~~Nill~~  210 (338)
                           .....++||||+. |+|.+++......  ..+++..++.++.|++.||.|||   ..+  |+||||||+|||++.
T Consensus       100 ~~~~~~~~~~~lv~e~~~-g~L~~~l~~~~~~--~~~~~~~~~~i~~qi~~~l~~LH---~~~~~ivH~Dikp~NIl~~~  173 (337)
T 3ll6_A          100 EESDTGQAEFLLLTELCK-GQLVEFLKKMESR--GPLSCDTVLKIFYQTCRAVQHMH---RQKPPIIHRDLKVENLLLSN  173 (337)
T ss_dssp             TTSTTSSEEEEEEEECCS-EEHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHHHHHH---TSSSCCBCCCCCGGGCEECT
T ss_pred             cccccCCceEEEEEEecC-CCHHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHH---hCCCCEEEccCCcccEEECC
Confidence                 3345799999997 7999988652211  26999999999999999999999   888  999999999999999


Q ss_pred             CCceEEecCCCCcccCCCCcee----------eeecccccCCccccccc---ccCCCCccchHHHHHHHHHHHHhCCCCc
Q 038823          211 ENVAKLFDFSESISIPEGETHI----------ITRSRFGAWTYSAPEYK---RGGVFNEKLDVYTFSTVLLELLTGQSTR  277 (338)
Q Consensus       211 ~~~~kl~Dfg~a~~~~~~~~~~----------~~~~~~gt~~y~aPE~~---~~~~~~~~~Dv~s~Gv~l~el~tG~~p~  277 (338)
                      ++.+||+|||++..........          ......||+.|+|||.+   .+..++.++||||||+++|+|+||+.||
T Consensus       174 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~  253 (337)
T 3ll6_A          174 QGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPF  253 (337)
T ss_dssp             TSCEEBCCCTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CCCEEEecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCC
Confidence            9999999999998765432211          01244589999999998   5667899999999999999999999999


Q ss_pred             CCccCCcccccHHHHHHHHHh----cCccccccccccccCcCCcccHHHHHHHH
Q 038823          278 DLLRTHGSVRHLIEYLKNYLQ----NNRFTEIADPIIVQDLSCTETEHQFQACA  327 (338)
Q Consensus       278 ~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~d~~l~~~~~~~~~~~~~~~~~  327 (338)
                      ......    .+.........    ...+.+++..++..+|..|++..++...+
T Consensus       254 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l  303 (337)
T 3ll6_A          254 EDGAKL----RIVNGKYSIPPHDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQL  303 (337)
T ss_dssp             ----------------CCCCTTCCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHH
T ss_pred             cchhHH----HhhcCcccCCcccccchHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence            753321    11100000000    01244566667777777777665554433

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=6.4e-42  Score=308.38  Aligned_cols=210  Identities=18%  Similarity=0.237  Sum_probs=173.1

Q ss_pred             CHHHHHHhhcCCCcCCccccCCCceEEEEEECCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCC
Q 038823           62 SAKELEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETP  140 (338)
Q Consensus        62 ~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~  140 (338)
                      ...++....++|.+.+.||+|+||.||+|.+.+ .+++|++.... .....+.+.+|+.++++++|+||+++++++.+.+
T Consensus        24 ~~~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~-~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~  102 (319)
T 2y4i_B           24 FLQEWDIPFEQLEIGELIGKGRFGQVYHGRWHG-EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPP  102 (319)
T ss_dssp             CGGGSSSCCSCEECCCBCCCSSSSEEEEEEESS-SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSS
T ss_pred             ccccccCCHHHeEEeeEeccCCceEEEEEEEcC-eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCC
Confidence            445666778899999999999999999999854 48999987542 2223355778999999999999999999999999


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                      ..++||||+++++|.+++.....    .+++..++.++.|++.||.|||   +.+|+||||||+||+++ ++.+||+|||
T Consensus       103 ~~~iv~e~~~~~~L~~~l~~~~~----~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dlkp~NIl~~-~~~~~l~Dfg  174 (319)
T 2y4i_B          103 HLAIITSLCKGRTLYSVVRDAKI----VLDVNKTRQIAQEIVKGMGYLH---AKGILHKDLKSKNVFYD-NGKVVITDFG  174 (319)
T ss_dssp             CEEEECBCCCSEEHHHHTTSSCC----CCCSHHHHHHHHHHHHHHHHHH---HTTCCCCCCCSTTEEEC---CCEECCCS
T ss_pred             ceEEEeecccCCcHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHH---hCCccccCCChhhEEEe-CCCEEEeecC
Confidence            99999999999999999977543    6899999999999999999999   89999999999999998 6899999999


Q ss_pred             CCcccCCCCce---eeeecccccCCccccccccc---------CCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          221 ESISIPEGETH---IITRSRFGAWTYSAPEYKRG---------GVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       221 ~a~~~~~~~~~---~~~~~~~gt~~y~aPE~~~~---------~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ++.........   .......||..|+|||.+..         ..++.++||||||+++|||+||+.||...
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~  246 (319)
T 2y4i_B          175 LFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQ  246 (319)
T ss_dssp             CCC----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSC
T ss_pred             CccccccccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            98765322111   11134458999999999864         34789999999999999999999999754

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=3.6e-41  Score=307.20  Aligned_cols=202  Identities=16%  Similarity=0.232  Sum_probs=176.4

Q ss_pred             hcCCCcCCccccCCCceEEEEEECCeEEEEEEeCcCCCc----------------hHHHHHHHHHHHHhccCCcceeeee
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSD----------------SACKFSINNIVYAAQMDHKHILKLI  133 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~----------------~~~~~~~~e~~~l~~l~h~niv~l~  133 (338)
                      .++|.+.+.||+|+||.||+|.+++..||+|.+......                ...+.+.+|+.++++++||||++++
T Consensus        30 ~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~  109 (348)
T 2pml_X           30 INDYRIIRTLNQGKFNKIILCEKDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCE  109 (348)
T ss_dssp             ETTEEEEEEEECCSSCCEEEEEETTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCCS
T ss_pred             cCceEEEEEEcCCCCeEEEEEEcCCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceEE
Confidence            468999999999999999999999999999998643211                1127789999999999999999999


Q ss_pred             eeeecCCcceEEEeecCCCCHHHh------hhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CCeeecCCCCCce
Q 038823          134 GCCLETPIPILVFEYGEYTTLRDR------IFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFP-RPIVFGNLISLCI  206 (338)
Q Consensus       134 ~~~~~~~~~~lv~e~~~~gsL~~~------l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~-~~iiH~dik~~Ni  206 (338)
                      +++.+.+..++||||+++++|.++      +.....   ..+++..+..++.|++.||.|||   + .+|+|+||||+||
T Consensus       110 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~---~~~~~~~~~~i~~qi~~~l~~lH---~~~~i~H~dl~p~Ni  183 (348)
T 2pml_X          110 GIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYT---CFIPIQVIKCIIKSVLNSFSYIH---NEKNICHRDVKPSNI  183 (348)
T ss_dssp             EEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSC---CCCCHHHHHHHHHHHHHHHHHHH---HTSCEECCCCCGGGE
T ss_pred             EEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccc---cCCCHHHHHHHHHHHHHHHHHHh---ccCCEeecCCChHhE
Confidence            999999999999999999999998      554211   37999999999999999999999   7 9999999999999


Q ss_pred             eeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccC-CCCc-cchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          207 LFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGG-VFNE-KLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       207 ll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      +++.++.+||+|||.+......    ......||..|+|||.+.+. .++. ++||||||+++|+|+||+.||....
T Consensus       184 l~~~~~~~kl~dfg~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  256 (348)
T 2pml_X          184 LMDKNGRVKLSDFGESEYMVDK----KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKI  256 (348)
T ss_dssp             EECTTSCEEECCCTTCEECBTT----EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             EEcCCCcEEEeccccccccccc----cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            9999999999999999876543    12556799999999999877 5666 9999999999999999999998543

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=1.7e-41  Score=305.05  Aligned_cols=213  Identities=16%  Similarity=0.231  Sum_probs=173.1

Q ss_pred             ccccCHHHHHHhhcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccC--Ccceeeee
Q 038823           58 YRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESY-SDSACKFSINNIVYAAQMD--HKHILKLI  133 (338)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~--h~niv~l~  133 (338)
                      .+.+.++.+....++|.+.+.||+|+||.||+|.+ +++.||+|++.... .....+.+.+|+.++.+++  |+||++++
T Consensus        15 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~   94 (313)
T 3cek_A           15 TENLYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLY   94 (313)
T ss_dssp             -----CCEEEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEE
T ss_pred             CCCCCeeeeeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEE
Confidence            33455555666778899999999999999999998 78899999997543 4455678899999999997  59999999


Q ss_pred             eeeecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCc
Q 038823          134 GCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENV  213 (338)
Q Consensus       134 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~  213 (338)
                      +++.+.+..++||| +.+++|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+||+++ ++.
T Consensus        95 ~~~~~~~~~~lv~e-~~~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~-~~~  164 (313)
T 3cek_A           95 DYEITDQYIYMVME-CGNIDLNSWLKKKK-----SIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGM  164 (313)
T ss_dssp             EEEECSSEEEEEEC-CCSEEHHHHHHHCS-----SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEE-TTE
T ss_pred             EEeecCCEEEEEEe-cCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCcccEEEE-CCe
Confidence            99999999999999 56689999998754     6899999999999999999999   89999999999999996 489


Q ss_pred             eEEecCCCCcccCCCCceeeeecccccCCccccccccc-----------CCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          214 AKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRG-----------GVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       214 ~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      +||+|||++................||+.|+|||.+.+           ..++.++||||||+++|+|+||+.||...
T Consensus       165 ~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~  242 (313)
T 3cek_A          165 LKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQI  242 (313)
T ss_dssp             EEECCCSSSCC--------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             EEEeeccccccccCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhH
Confidence            99999999987655433322245568999999999865           46889999999999999999999999754

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.1e-42  Score=314.31  Aligned_cols=199  Identities=16%  Similarity=0.190  Sum_probs=170.0

Q ss_pred             hcCCCcCCccccCCCceEEEEEE-C---------CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceee--------
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW-Q---------ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILK--------  131 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~-~---------~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~--------  131 (338)
                      .++|.+.+.||+|+||.||+|.+ .         ++.||+|.+...      +.+.+|+.++++++||||++        
T Consensus        41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~------~~~~~E~~~l~~l~h~niv~~~~~~~~~  114 (352)
T 2jii_A           41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD------GRLFNEQNFFQRAAKPLQVNKWKKLYST  114 (352)
T ss_dssp             SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT------STHHHHHHHHHHHCCHHHHHHHHHHTTC
T ss_pred             CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc------chHHHHHHHHHHhcccchhhhhhhhccC
Confidence            46799999999999999999998 2         678999998754      45789999999999999988        


Q ss_pred             -------eeeeeec-CCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCC
Q 038823          132 -------LIGCCLE-TPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLIS  203 (338)
Q Consensus       132 -------l~~~~~~-~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~  203 (338)
                             +++++.. .+..++||||+ +++|.+++.....   ..+++..++.++.||+.||.|||   +.+|+||||||
T Consensus       115 ~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~---~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp  187 (352)
T 2jii_A          115 PLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPK---HVLSERSVLQVACRLLDALEFLH---ENEYVHGNVTA  187 (352)
T ss_dssp             TTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGG---GCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCG
T ss_pred             CccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCc---CCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCH
Confidence                   5667665 67889999999 8999999987521   26999999999999999999999   89999999999


Q ss_pred             CceeeCCCC--ceEEecCCCCcccCCCCcee-----eeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCC
Q 038823          204 LCILFNEEN--VAKLFDFSESISIPEGETHI-----ITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQST  276 (338)
Q Consensus       204 ~Nill~~~~--~~kl~Dfg~a~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p  276 (338)
                      +|||++.++  .+||+|||+++.........     ......||+.|+|||.+.+..++.++||||||+++|||+||+.|
T Consensus       188 ~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p  267 (352)
T 2jii_A          188 ENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLP  267 (352)
T ss_dssp             GGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCT
T ss_pred             HHEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCC
Confidence            999999998  89999999997765432111     11334799999999999998999999999999999999999999


Q ss_pred             cCCcc
Q 038823          277 RDLLR  281 (338)
Q Consensus       277 ~~~~~  281 (338)
                      |....
T Consensus       268 f~~~~  272 (352)
T 2jii_A          268 WTNCL  272 (352)
T ss_dssp             TGGGT
T ss_pred             cccCC
Confidence            98654

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=8.5e-41  Score=312.59  Aligned_cols=199  Identities=23%  Similarity=0.270  Sum_probs=163.9

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecC------Cc
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLET------PI  141 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~------~~  141 (338)
                      ..+|...+.||+|+||.||+|.+  +++.||||++.....     ...+|+++|++++|+||+++++++...      ..
T Consensus        53 ~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~-----~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~  127 (420)
T 1j1b_A           53 EVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR-----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVY  127 (420)
T ss_dssp             EEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT-----SCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEE
T ss_pred             cceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch-----hHHHHHHHHHHcCCCCccceeeEEeccCCCCccee
Confidence            34688899999999999999999  689999999865422     234799999999999999999988532      13


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC-CceEEecCC
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE-NVAKLFDFS  220 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~-~~~kl~Dfg  220 (338)
                      +++||||++ ++|.+.+...... ...+++..+..++.||+.||.|||   +.+|+||||||+|||++.+ +.+||+|||
T Consensus       128 ~~lv~e~~~-~~l~~~~~~~~~~-~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NILl~~~~~~~kl~DFG  202 (420)
T 1j1b_A          128 LNLVLDYVP-ETVYRVARHYSRA-KQTLPVIYVKLYMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFG  202 (420)
T ss_dssp             EEEEEECCC-EEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEEETTTTEEEECCCT
T ss_pred             EEeehhccc-ccHHHHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChhhEEEeCCCCeEEeccch
Confidence            679999999 4776665431100 026999999999999999999999   9999999999999999965 678999999


Q ss_pred             CCcccCCCCceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          221 ESISIPEGETHIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      +++........   ....||+.|+|||++.+. .++.++|||||||++|||++|+.||....
T Consensus       203 ~a~~~~~~~~~---~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~  261 (420)
T 1j1b_A          203 SAKQLVRGEPN---VSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDS  261 (420)
T ss_dssp             TCEECCTTCCC---CSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             hhhhcccCCCc---eeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCC
Confidence            99876543322   345789999999998765 69999999999999999999999998643

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=1.6e-40  Score=305.99  Aligned_cols=197  Identities=16%  Similarity=0.223  Sum_probs=169.8

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcc---
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIP---  142 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~---  142 (338)
                      ..++|...+.||+|+||.||+|.+  +++.||+|++.... .....+.+.+|+.+++.++||||+++++++...+..   
T Consensus        40 l~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~  119 (371)
T 4exu_A           40 LPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF  119 (371)
T ss_dssp             EETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTC
T ss_pred             ccccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccc
Confidence            346888999999999999999998  78999999997653 344467789999999999999999999999877654   


Q ss_pred             ---eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecC
Q 038823          143 ---ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDF  219 (338)
Q Consensus       143 ---~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Df  219 (338)
                         ++||||+. ++|.+.+..       .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+||+||
T Consensus       120 ~~~~lv~e~~~-~~l~~~~~~-------~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kL~Df  188 (371)
T 4exu_A          120 YDFYLVMPFMQ-TDLQKIMGM-------EFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDF  188 (371)
T ss_dssp             CCCEEEEECCC-EEHHHHTTS-------CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECST
T ss_pred             eeEEEEEcccc-ccHHHHhhc-------CCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCcCHHHeEECCCCCEEEEec
Confidence               99999999 789888732       5899999999999999999999   899999999999999999999999999


Q ss_pred             CCCcccCCCCceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          220 SESISIPEGETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       220 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      |++.......     ....||+.|+|||.+.+ ..++.++|||||||++|+|+||+.||....
T Consensus       189 g~a~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~  246 (371)
T 4exu_A          189 GLARHADAEM-----TGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKD  246 (371)
T ss_dssp             TCC-------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             CcccccccCc-----CCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCC
Confidence            9998654432     45568999999999877 679999999999999999999999997543

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=1.4e-41  Score=305.95  Aligned_cols=208  Identities=17%  Similarity=0.163  Sum_probs=172.5

Q ss_pred             HHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeee----cCC
Q 038823           67 EIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCL----ETP  140 (338)
Q Consensus        67 ~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~----~~~  140 (338)
                      ....++|.+.+.||+|+||.||+|..  +++.||+|.+... .....+.+.+|+.++++++||||+++++++.    ...
T Consensus        25 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~  103 (317)
T 2buj_A           25 IIDNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCH-EQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKH  103 (317)
T ss_dssp             EETTEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEES-SHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEE
T ss_pred             EECCeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecC-CHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCc
Confidence            34567899999999999999999998  8899999998654 4455678899999999999999999999987    344


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                      ..++||||+++|+|.+++...... ...+++..++.++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||
T Consensus       104 ~~~lv~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~dfg  179 (317)
T 2buj_A          104 EAWLLLPFFKRGTLWNEIERLKDK-GNFLTEDQILWLLLGICRGLEAIH---AKGYAHRDLKPTNILLGDEGQPVLMDLG  179 (317)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCS
T ss_pred             eeEEEEEeCCCCcHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEcCCCCEEEEecC
Confidence            789999999999999998762110 126999999999999999999999   8999999999999999999999999999


Q ss_pred             CCcccCCCCcee-------eeecccccCCcccccccccCC---CCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          221 ESISIPEGETHI-------ITRSRFGAWTYSAPEYKRGGV---FNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       221 ~a~~~~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ++..........       ......||+.|+|||.+....   ++.++||||||+++|+|++|+.||..
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~  248 (317)
T 2buj_A          180 SMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDM  248 (317)
T ss_dssp             SCEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHH
T ss_pred             cchhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhh
Confidence            887653211100       002334799999999987554   68999999999999999999999964

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=7.7e-41  Score=297.16  Aligned_cols=201  Identities=21%  Similarity=0.255  Sum_probs=175.3

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      ...++|.+.+.||+|+||.||+|..  +++.||+|++.... .....+.+.+|+.++++++||||+++++++.+.+..++
T Consensus        19 ~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   98 (287)
T 2wei_A           19 TFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYI   98 (287)
T ss_dssp             HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             HHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEE
Confidence            4456799999999999999999999  78899999986542 23345778999999999999999999999999999999


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC---CceEEecCCC
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE---NVAKLFDFSE  221 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~---~~~kl~Dfg~  221 (338)
                      ||||+++++|.+.+....     .+++..++.++.|++.||.|||   ..+++|+||||+||+++.+   +.+||+|||+
T Consensus        99 v~e~~~~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~  170 (287)
T 2wei_A           99 VGELYTGGELFDEIIKRK-----RFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGL  170 (287)
T ss_dssp             EECCCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEECSTTG
T ss_pred             EEEccCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCChhhEEEecCCCcccEEEeccCc
Confidence            999999999999887653     5899999999999999999999   8999999999999999754   4699999999


Q ss_pred             CcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          222 SISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       222 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      +.........   ....||+.|+|||.+.+ .++.++||||||+++|+|++|+.||...
T Consensus       171 ~~~~~~~~~~---~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~  225 (287)
T 2wei_A          171 STCFQQNTKM---KDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGK  225 (287)
T ss_dssp             GGTBCCCSSC---SCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ceeecCCCcc---ccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCC
Confidence            8876543322   34458999999998865 4899999999999999999999999754

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=2.2e-40  Score=313.95  Aligned_cols=247  Identities=14%  Similarity=0.108  Sum_probs=192.6

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCC-cceeeeeeeeecCCcceEEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDH-KHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h-~niv~l~~~~~~~~~~~lv~  146 (338)
                      .++|.+.+.||+|+||.||+|.+  ++..||||++......   ..+.+|+.+++.++| +++..+..++...+..++||
T Consensus         6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~---~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvm   82 (483)
T 3sv0_A            6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKH---PQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVM   82 (483)
T ss_dssp             TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSS---CCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEE
T ss_pred             CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEecccccc---HHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEE
Confidence            46799999999999999999998  7899999988754332   347889999999986 56666777777888899999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceee---CCCCceEEecCCCCc
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILF---NEENVAKLFDFSESI  223 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill---~~~~~~kl~Dfg~a~  223 (338)
                      ||+ +++|.+++.....    .+++..++.++.||+.||.|||   ..+|+||||||+|||+   +.++.+||+|||+++
T Consensus        83 e~~-g~sL~~ll~~~~~----~l~~~~~~~i~~qi~~aL~yLH---~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~  154 (483)
T 3sv0_A           83 DLL-GPSLEDLFNFCSR----KLSLKTVLMLADQMINRVEFVH---SKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAK  154 (483)
T ss_dssp             ECC-CCBHHHHHHHTTT----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTTCEEECCCTTCE
T ss_pred             ECC-CCCHHHHHHhhcC----CCCHHHHHHHHHHHHHHHHHHH---HCCEeecccCcceEEEecCCCCCeEEEEeCCcce
Confidence            999 7999999986543    6999999999999999999999   8999999999999999   588999999999998


Q ss_pred             ccCCCCce-----eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHHHHHHHh
Q 038823          224 SIPEGETH-----IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQ  298 (338)
Q Consensus       224 ~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~~~~~~~  298 (338)
                      ........     .......||..|+|||.+.+..++.++|||||||++|||++|+.||...........+.........
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~~~  234 (483)
T 3sv0_A          155 KYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVA  234 (483)
T ss_dssp             ECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHHHH
T ss_pred             eccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhcccc
Confidence            76654322     1113567999999999999999999999999999999999999999876553222222222221111


Q ss_pred             ----------cCccccccccccccCcCCcccHHHHHHHH
Q 038823          299 ----------NNRFTEIADPIIVQDLSCTETEHQFQACA  327 (338)
Q Consensus       299 ----------~~~~~~~~d~~l~~~~~~~~~~~~~~~~~  327 (338)
                                ...+.+++..++..++..|++..++.+++
T Consensus       235 ~~~~~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L  273 (483)
T 3sv0_A          235 TSIEALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLF  273 (483)
T ss_dssp             SCHHHHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHH
T ss_pred             ccHHHHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHH
Confidence                      11344555556666666666555554443

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=1.7e-41  Score=314.86  Aligned_cols=199  Identities=19%  Similarity=0.206  Sum_probs=163.3

Q ss_pred             hcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCc------c
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPI------P  142 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~------~  142 (338)
                      ..+|...+.||+|+||.||+|.+ .+..+|+|++......     ..+|+.+++.++||||+++++++...+.      .
T Consensus        39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~~-----~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~  113 (394)
T 4e7w_A           39 EIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRF-----KNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFL  113 (394)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTTS-----CCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEE
T ss_pred             cceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcch-----HHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEE
Confidence            35688999999999999999999 6667999988654221     2369999999999999999999865433      7


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeC-CCCceEEecCCC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFN-EENVAKLFDFSE  221 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~-~~~~~kl~Dfg~  221 (338)
                      ++||||+++ ++.+.+..... ....+++..+..++.||+.||.|||   +.+|+||||||+|||++ .++.+||+|||+
T Consensus       114 ~lv~e~~~~-~l~~~~~~~~~-~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~~kL~DFG~  188 (394)
T 4e7w_A          114 NLVLEYVPE-TVYRASRHYAK-LKQTMPMLLIKLYMYQLLRSLAYIH---SIGICHRDIKPQNLLLDPPSGVLKLIDFGS  188 (394)
T ss_dssp             EEEEECCSE-EHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTT
T ss_pred             EEEeeccCc-cHHHHHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEcCCCCcEEEeeCCC
Confidence            899999995 44443332100 0026999999999999999999999   89999999999999999 799999999999


Q ss_pred             CcccCCCCceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          222 SISIPEGETHIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       222 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ++........   ....||+.|+|||.+.+. .++.++|||||||++|||++|+.||....
T Consensus       189 a~~~~~~~~~---~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~  246 (394)
T 4e7w_A          189 AKILIAGEPN---VSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGES  246 (394)
T ss_dssp             CEECCTTCCC---CSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             cccccCCCCC---cccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            9876544322   455689999999998765 58999999999999999999999998643

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=4.4e-40  Score=298.31  Aligned_cols=198  Identities=19%  Similarity=0.215  Sum_probs=174.0

Q ss_pred             hcCCCcCCccccCCCceEEEEEE---CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcc------eeeeeeeeecCC
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW---QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKH------ILKLIGCCLETP  140 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~---~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~n------iv~l~~~~~~~~  140 (338)
                      .++|.+.+.||+|+||.||+|.+   +++.||+|++...  ....+.+.+|+.+++.++|+|      ++++++++.+.+
T Consensus        13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~   90 (339)
T 1z57_A           13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV--DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHG   90 (339)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS--HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETT
T ss_pred             cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC--CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCC
Confidence            46799999999999999999987   6889999999753  344567889999999987665      999999999999


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC----------
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE----------  210 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~----------  210 (338)
                      ..++||||+ +++|.+++.....   .++++..+..++.|++.||.|||   +.+|+||||||+|||++.          
T Consensus        91 ~~~lv~e~~-~~~l~~~l~~~~~---~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~~~~  163 (339)
T 1z57_A           91 HICIVFELL-GLSTYDFIKENGF---LPFRLDHIRKMAYQICKSVNFLH---SNKLTHTDLKPENILFVQSDYTEAYNPK  163 (339)
T ss_dssp             EEEEEEECC-CCBHHHHHHHTTT---CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCCCEEEEEC--
T ss_pred             cEEEEEcCC-CCCHHHHHHhcCC---CCCcHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEEeccccccccCCc
Confidence            999999999 7999999977643   26899999999999999999999   899999999999999987          


Q ss_pred             ---------CCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          211 ---------ENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       211 ---------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                               ++.+||+|||++.......     ....||+.|+|||.+.+..++.++||||||+++|||+||+.||....
T Consensus       164 ~~~~~~~~~~~~~kl~Dfg~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~  238 (339)
T 1z57_A          164 IKRDERTLINPDIKVVDFGSATYDDEHH-----STLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHD  238 (339)
T ss_dssp             --CEEEEESCCCEEECCCSSCEETTSCC-----CSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSC
T ss_pred             cccccccccCCCceEeeCcccccCcccc-----ccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCC
Confidence                     6689999999998754432     44568999999999998899999999999999999999999998643

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=1e-40  Score=300.25  Aligned_cols=201  Identities=19%  Similarity=0.250  Sum_probs=164.9

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeee----------
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCL----------  137 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~----------  137 (338)
                      .++|.+.+.||+|+||.||+|.+  +++.||+|++... .....+.+.+|+.++++++||||+++++++.          
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   88 (320)
T 2i6l_A           10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLT-DPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDV   88 (320)
T ss_dssp             TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECC-SHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC--
T ss_pred             CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecC-ChHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccccc
Confidence            45788899999999999999999  5899999998755 4555678899999999999999999999874          


Q ss_pred             ----cCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeC-CCC
Q 038823          138 ----ETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFN-EEN  212 (338)
Q Consensus       138 ----~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~-~~~  212 (338)
                          +.+..++||||++ |+|.+++...      .+++..+..++.|++.||.|||   +.+|+||||||+||+++ +++
T Consensus        89 ~~~~~~~~~~lv~e~~~-~~L~~~~~~~------~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~  158 (320)
T 2i6l_A           89 GSLTELNSVYIVQEYME-TDLANVLEQG------PLLEEHARLFMYQLLRGLKYIH---SANVLHRDLKPANLFINTEDL  158 (320)
T ss_dssp             --CCSCSEEEEEEECCS-EEHHHHHTTC------CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTT
T ss_pred             ccccccCceeEEeeccC-CCHHHHhhcC------CccHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCC
Confidence                3457899999998 6999998643      5899999999999999999999   89999999999999997 567


Q ss_pred             ceEEecCCCCcccCCCCce-eeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          213 VAKLFDFSESISIPEGETH-IITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       213 ~~kl~Dfg~a~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      .+||+|||++......... .......+|..|+|||.+.. ..++.++||||||+++|||+||+.||....
T Consensus       159 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~  229 (320)
T 2i6l_A          159 VLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAH  229 (320)
T ss_dssp             EEEECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             eEEEccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCC
Confidence            9999999999876432211 11134557899999998865 678999999999999999999999998643

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=3.2e-41  Score=304.77  Aligned_cols=204  Identities=17%  Similarity=0.218  Sum_probs=172.1

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE---CCeEEEEEEeCcCCC-chHHHHHHHHHHHHhcc---CCcceeeeeeeee---
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW---QERLISVMKYNESYS-DSACKFSINNIVYAAQM---DHKHILKLIGCCL---  137 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~---~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l---~h~niv~l~~~~~---  137 (338)
                      .+.++|.+.+.||+|+||.||+|.+   +++.||+|++..... ......+.+|+.+++.+   +||||+++++++.   
T Consensus         8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~   87 (326)
T 1blx_A            8 RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR   87 (326)
T ss_dssp             CGGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE
T ss_pred             CchhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecc
Confidence            4567899999999999999999998   578899999864321 11123456777777666   8999999999987   


Q ss_pred             --cCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceE
Q 038823          138 --ETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAK  215 (338)
Q Consensus       138 --~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~k  215 (338)
                        .....++||||++ |+|.+++.....   ..+++..+..++.|++.||.|||   +.+|+|+||||+||+++.++.+|
T Consensus        88 ~~~~~~~~lv~e~~~-~~L~~~l~~~~~---~~~~~~~~~~~~~qi~~~l~~lH---~~gi~H~dlkp~Nili~~~~~~k  160 (326)
T 1blx_A           88 TDRETKLTLVFEHVD-QDLTTYLDKVPE---PGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIK  160 (326)
T ss_dssp             CSSEEEEEEEEECCS-CBHHHHHHHSCT---TCSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEE
T ss_pred             cCCCceEEEEEecCC-CCHHHHHHhccc---CCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCCHHHeEEcCCCCEE
Confidence              5567899999999 699999977543   25899999999999999999999   89999999999999999999999


Q ss_pred             EecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          216 LFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       216 l~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      |+|||++.........   ....||..|+|||.+.+..++.++||||||+++|+|+||+.||....
T Consensus       161 l~Dfg~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  223 (326)
T 1blx_A          161 LADFGLARIYSFQMAL---TSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSS  223 (326)
T ss_dssp             ECSCCSCCCCCGGGGG---CCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             EecCcccccccCCCCc---cccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCC
Confidence            9999999766433211   44568999999999998899999999999999999999999998543

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=100.00  E-value=2.7e-40  Score=297.53  Aligned_cols=203  Identities=20%  Similarity=0.214  Sum_probs=154.9

Q ss_pred             HHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHH-HHHHHHHHhccCCcceeeeeeeeecCCcce
Q 038823           67 EIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKF-SINNIVYAAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        67 ~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~-~~~e~~~l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      ....++|...+.||+|+||.||+|.+  +++.||+|.+........... +..+..+++.++||||+++++++.+.+..+
T Consensus        21 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~  100 (318)
T 2dyl_A           21 QAEINDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVF  100 (318)
T ss_dssp             ECCGGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred             hhhhccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEE
Confidence            34456788899999999999999999  789999999976644433333 444555788889999999999999999999


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CeeecCCCCCceeeCCCCceEEecCCCC
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPR-PIVFGNLISLCILFNEENVAKLFDFSES  222 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~-~iiH~dik~~Nill~~~~~~kl~Dfg~a  222 (338)
                      +||||+ ++.+..+......    .+++..+..++.|++.||.|||   .. +|+|+||||+||+++.++.+||+|||++
T Consensus       101 lv~e~~-~~~~~~l~~~~~~----~~~~~~~~~~~~~i~~~l~~lH---~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~  172 (318)
T 2dyl_A          101 IAMELM-GTCAEKLKKRMQG----PIPERILGKMTVAIVKALYYLK---EKHGVIHRDVKPSNILLDERGQIKLCDFGIS  172 (318)
T ss_dssp             EEECCC-SEEHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHHH---HHHCCCCCCCCGGGEEECTTSCEEECCCTTC
T ss_pred             EEEecc-CCcHHHHHHHhcc----CCCHHHHHHHHHHHHHHHHHHH---hhCCEEeCCCCHHHEEECCCCCEEEEECCCc
Confidence            999999 4666666554332    6899999999999999999999   75 9999999999999999999999999999


Q ss_pred             cccCCCCceeeeecccccCCcccccccc-----cCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          223 ISIPEGETHIITRSRFGAWTYSAPEYKR-----GGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       223 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .........   ....||+.|+|||.+.     ...++.++||||||+++|+|+||+.||...
T Consensus       173 ~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  232 (318)
T 2dyl_A          173 GRLVDDKAK---DRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNC  232 (318)
T ss_dssp             -----------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             hhccCCccc---cccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCC
Confidence            766543221   3456899999999984     456889999999999999999999999753

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=1.9e-40  Score=296.09  Aligned_cols=195  Identities=21%  Similarity=0.322  Sum_probs=162.7

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeec--------
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLE--------  138 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--------  138 (338)
                      ..++|++.+.||+|+||.||+|..  ++..||+|.+...  ....+.+.+|+.++++++||||+++++++.+        
T Consensus         4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   81 (303)
T 1zy4_A            4 YASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT--EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPM   81 (303)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE--HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC--
T ss_pred             ccccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc--HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhh
Confidence            356789999999999999999998  7889999998643  3445778999999999999999999998865        


Q ss_pred             -----CCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCc
Q 038823          139 -----TPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENV  213 (338)
Q Consensus       139 -----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~  213 (338)
                           .+..++||||+++|+|.+++.....    .+++..++.++.|++.||.|||   +.+|+|+||||+||+++.++.
T Consensus        82 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~----~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dlkp~Nil~~~~~~  154 (303)
T 1zy4_A           82 TAVKKKSTLFIQMEYCENGTLYDLIHSENL----NQQRDEYWRLFRQILEALSYIH---SQGIIHRDLKPMNIFIDESRN  154 (303)
T ss_dssp             ----CEEEEEEEEECCCSCBHHHHHHHSCG----GGCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSC
T ss_pred             cccccCCceEEEEecCCCCCHHHhhhcccc----ccchHHHHHHHHHHHHHHHHHH---hCCeecccCCHHhEEEcCCCC
Confidence                 3467999999999999999986543    6889999999999999999999   899999999999999999999


Q ss_pred             eEEecCCCCcccCCCCc------------eeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHh
Q 038823          214 AKLFDFSESISIPEGET------------HIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLT  272 (338)
Q Consensus       214 ~kl~Dfg~a~~~~~~~~------------~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~t  272 (338)
                      +||+|||++........            ........||..|+|||.+.+. .++.++||||||+++|+|++
T Consensus       155 ~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~  226 (303)
T 1zy4_A          155 VKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY  226 (303)
T ss_dssp             EEECCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS
T ss_pred             EEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh
Confidence            99999999987643211            1111345689999999998764 68999999999999999998

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=6.8e-40  Score=299.65  Aligned_cols=196  Identities=16%  Similarity=0.222  Sum_probs=168.7

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCc-----
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPI-----  141 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~-----  141 (338)
                      .++|...+.||+|+||.||+|.+  +|+.||+|++.... .....+.+.+|+.++++++||||+++++++...+.     
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~  102 (353)
T 3coi_A           23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  102 (353)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred             CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence            46788999999999999999998  78999999997653 33445778999999999999999999999987654     


Q ss_pred             -ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          142 -PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       142 -~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                       .++||||+. ++|.+++..       .+++..+..++.||+.||.|||   +.+|+||||||+||+++.++.+||+|||
T Consensus       103 ~~~lv~e~~~-~~l~~~~~~-------~~~~~~~~~i~~qi~~al~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg  171 (353)
T 3coi_A          103 DFYLVMPFMQ-TDLQKIMGL-------KFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFG  171 (353)
T ss_dssp             CCEEEEECCS-EEGGGTTTS-------CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTCCEEECSTT
T ss_pred             eEEEEecccc-CCHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEeECCCCcEEEeecc
Confidence             499999998 688887742       4899999999999999999999   8999999999999999999999999999


Q ss_pred             CCcccCCCCceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          221 ESISIPEGETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ++.......     ....||+.|+|||.+.+ ..++.++||||||+++|+|+||+.||....
T Consensus       172 ~~~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~  228 (353)
T 3coi_A          172 LARHADAEM-----TGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKD  228 (353)
T ss_dssp             CTTC-------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSC
T ss_pred             cccCCCCCc-----cccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            998654331     34568999999999876 678999999999999999999999998643

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=1.1e-39  Score=298.80  Aligned_cols=210  Identities=14%  Similarity=0.141  Sum_probs=161.6

Q ss_pred             HHHHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCc
Q 038823           64 KELEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPI  141 (338)
Q Consensus        64 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~  141 (338)
                      .+.....++|.+.+.||+|+||.||+|.+  ++..||+|++......  ...+.+++..+..++||||+++++++...+.
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~   93 (360)
T 3e3p_A           16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRF--RNRELQIMQDLAVLHHPNIVQLQSYFYTLGE   93 (360)
T ss_dssp             HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTTC--CCHHHHHHHHHHHHCCTTBCCEEEEEEEECS
T ss_pred             hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccc--cHHHHHHHHHHHhcCCCCcccHHHhhhcccc
Confidence            45667778999999999999999999998  6889999998654222  2456778888899999999999999975433


Q ss_pred             -------ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC-CCc
Q 038823          142 -------PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE-ENV  213 (338)
Q Consensus       142 -------~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~-~~~  213 (338)
                             .++||||+++ +|.+.+..... ....+++..+..++.|++.||.|||.. +.+|+||||||+|||++. ++.
T Consensus        94 ~~~~~~~~~lv~e~~~~-~l~~~~~~~~~-~~~~~~~~~~~~~~~qi~~al~~lH~~-~~~ivH~Dlkp~NIll~~~~~~  170 (360)
T 3e3p_A           94 RDRRDIYLNVVMEYVPD-TLHRCCRNYYR-RQVAPPPILIKVFLFQLIRSIGCLHLP-SVNVCHRDIKPHNVLVNEADGT  170 (360)
T ss_dssp             SCTTCEEEEEEEECCSC-BHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHTST-TTCCBCSCCCGGGEEEETTTTE
T ss_pred             ccccceeEEEEeecccc-cHHHHHHHHhh-cccCCCHHHHHHHHHHHHHHHHHHhCC-CCCeecCcCCHHHEEEeCCCCc
Confidence                   7899999995 65554432100 012689999999999999999999933 579999999999999996 899


Q ss_pred             eEEecCCCCcccCCCCceeeeecccccCCcccccccccCC-CCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          214 AKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGV-FNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       214 ~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      +||+|||++.........   ....||+.|+|||.+.+.. ++.++|||||||++|+|+||+.||....
T Consensus       171 ~kl~Dfg~a~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~  236 (360)
T 3e3p_A          171 LKLCDFGSAKKLSPSEPN---VAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDN  236 (360)
T ss_dssp             EEECCCTTCBCCCTTSCC---CSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             EEEeeCCCceecCCCCCc---ccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence            999999999877654332   4556899999999986654 8999999999999999999999998643

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=1.4e-39  Score=300.83  Aligned_cols=203  Identities=19%  Similarity=0.219  Sum_probs=174.4

Q ss_pred             HHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-Cc-----ceeeeeeeeec
Q 038823           67 EIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMD-HK-----HILKLIGCCLE  138 (338)
Q Consensus        67 ~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h~-----niv~l~~~~~~  138 (338)
                      ....++|.+.+.||+|+||.||+|.+  +++.||+|++...  ......+.+|+.+++.++ |+     +|+++++++..
T Consensus        50 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~  127 (382)
T 2vx3_A           50 EKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK--KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMF  127 (382)
T ss_dssp             CEETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS--HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEE
T ss_pred             CEeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc--HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeecc
Confidence            44567899999999999999999998  7889999999753  333466778888888875 44     49999999999


Q ss_pred             CCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeC--CCCceEE
Q 038823          139 TPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFN--EENVAKL  216 (338)
Q Consensus       139 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~--~~~~~kl  216 (338)
                      .+..++||||++ ++|.+++.....   ..+++..+..++.|++.||.|||.. ..+|+||||||+|||++  .++.+||
T Consensus       128 ~~~~~lv~e~~~-~~L~~~l~~~~~---~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL  202 (382)
T 2vx3_A          128 RNHLCLVFEMLS-YNLYDLLRNTNF---RGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKI  202 (382)
T ss_dssp             TTEEEEEEECCC-CBHHHHHHHTTT---SCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEE
T ss_pred             CCceEEEEecCC-CCHHHHHhhcCc---CCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEE
Confidence            999999999997 699999987642   2589999999999999999999932 36899999999999995  4788999


Q ss_pred             ecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          217 FDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       217 ~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      +|||+++......     ....||+.|+|||++.+..++.++|||||||++|||+||+.||....
T Consensus       203 ~DFG~a~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~~  262 (382)
T 2vx3_A          203 VDFGSSCQLGQRI-----YQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGAN  262 (382)
T ss_dssp             CCCTTCEETTCCC-----CSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             EeccCceeccccc-----ccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            9999998775432     44578999999999999999999999999999999999999998643

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=3e-40  Score=303.83  Aligned_cols=198  Identities=16%  Similarity=0.164  Sum_probs=169.2

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-----------Ccceeeeeeee
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMD-----------HKHILKLIGCC  136 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-----------h~niv~l~~~~  136 (338)
                      .++|.+.+.||+|+||.||+|.+  +++.||+|.+...  ....+.+.+|+.++++++           |+||+++++++
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~   95 (373)
T 1q8y_A           18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD--KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHF   95 (373)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC--HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEE
T ss_pred             CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC--ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHh
Confidence            45799999999999999999998  8899999999743  334467889999999886           88999999998


Q ss_pred             ecCC----cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CeeecCCCCCceeeC--
Q 038823          137 LETP----IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPR-PIVFGNLISLCILFN--  209 (338)
Q Consensus       137 ~~~~----~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~-~iiH~dik~~Nill~--  209 (338)
                      ...+    ..++||||+ +++|.+++.....   ..+++..+..++.||+.||.|||   +. +|+||||||+|||++  
T Consensus        96 ~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~---~~~~~~~~~~i~~qi~~aL~~lH---~~~~ivH~Dikp~NIll~~~  168 (373)
T 1q8y_A           96 NHKGPNGVHVVMVFEVL-GENLLALIKKYEH---RGIPLIYVKQISKQLLLGLDYMH---RRCGIIHTDIKPENVLMEIV  168 (373)
T ss_dssp             EEEETTEEEEEEEECCC-CEEHHHHHHHTTT---SCCCHHHHHHHHHHHHHHHHHHH---HTTCEECSCCSGGGEEEEEE
T ss_pred             hccCCCCceEEEEEecC-CCCHHHHHHHhhc---cCCcHHHHHHHHHHHHHHHHHHH---hcCCEEecCCChHHeEEecc
Confidence            7644    689999999 7999999987543   25899999999999999999999   87 999999999999994  


Q ss_pred             ----CCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          210 ----EENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       210 ----~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                          ..+.+||+|||++.......     ....||+.|+|||.+.+..++.++|||||||++|||+||+.||....
T Consensus       169 ~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~  239 (373)
T 1q8y_A          169 DSPENLIQIKIADLGNACWYDEHY-----TNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDE  239 (373)
T ss_dssp             ETTTTEEEEEECCCTTCEETTBCC-----CSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC----
T ss_pred             CCCcCcceEEEcccccccccCCCC-----CCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCc
Confidence                44589999999998765432     34568999999999999999999999999999999999999998644

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=100.00  E-value=1.5e-40  Score=322.65  Aligned_cols=201  Identities=17%  Similarity=0.207  Sum_probs=176.7

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeec------CCcc
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLE------TPIP  142 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~------~~~~  142 (338)
                      ++|.+.+.||+|+||.||+|.+  ++..||+|++.........+.+.+|+.++++++||||+++++++..      .+..
T Consensus        14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~   93 (676)
T 3qa8_A           14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLP   93 (676)
T ss_dssp             ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSC
T ss_pred             CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeE
Confidence            6799999999999999999998  7889999999876666667889999999999999999999998765      6678


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCc---eEEecC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENV---AKLFDF  219 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~---~kl~Df  219 (338)
                      ++||||+++|+|.+++......  ..+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.   +||+||
T Consensus        94 ~LVmEy~~ggsL~~~L~~~~~~--~~lse~~i~~I~~QLl~aL~yLH---s~gIVHrDLKP~NILl~~~g~~~~vKL~DF  168 (676)
T 3qa8_A           94 LLAMEYCEGGDLRKYLNQFENC--CGLKEGPIRTLLSDISSALRYLH---ENRIIHRDLKPENIVLQPGPQRLIHKIIDL  168 (676)
T ss_dssp             CCEEECCSSCBHHHHHHSSSCT--TCCCSSHHHHHHHHHHHHHHHHH---HTTBCCCCCCSTTEEEECCSSSCEEEECSC
T ss_pred             EEEEEeCCCCCHHHHHHhcccC--CCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEeecCCCceeEEEccc
Confidence            9999999999999999875432  25889999999999999999999   899999999999999997665   999999


Q ss_pred             CCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          220 SESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       220 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      |++.........   ....||..|+|||.+.+..++.++||||||+++|+|+||+.||..
T Consensus       169 G~a~~~~~~~~~---~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~  225 (676)
T 3qa8_A          169 GYAKELDQGELC---TEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLP  225 (676)
T ss_dssp             CCCCBTTSCCCC---CCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cccccccccccc---ccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCc
Confidence            999877554322   455799999999999999999999999999999999999999974

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=2.1e-39  Score=295.82  Aligned_cols=198  Identities=15%  Similarity=0.147  Sum_probs=171.7

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CC-eEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcc------eeeeeeeeecCC
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QE-RLISVMKYNESYSDSACKFSINNIVYAAQMDHKH------ILKLIGCCLETP  140 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~-~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~n------iv~l~~~~~~~~  140 (338)
                      .++|.+.+.||+|+||.||+|..  ++ ..||+|++...  ....+.+.+|+.++++++|++      ++.+++++...+
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~   95 (355)
T 2eu9_A           18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV--GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHG   95 (355)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC--HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETT
T ss_pred             cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc--ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCC
Confidence            46899999999999999999998  34 78999999753  344567889999999998766      899999999999


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceee------------
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILF------------  208 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill------------  208 (338)
                      ..++||||+. ++|.+.+.....   ..+++..+..++.||+.||.|||   +.+|+||||||+|||+            
T Consensus        96 ~~~lv~e~~~-~~l~~~l~~~~~---~~~~~~~~~~i~~qi~~~L~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~  168 (355)
T 2eu9_A           96 HMCIAFELLG-KNTFEFLKENNF---QPYPLPHVRHMAYQLCHALRFLH---ENQLTHTDLKPENILFVNSEFETLYNEH  168 (355)
T ss_dssp             EEEEEEECCC-CBHHHHHHHTTT---CCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEESCCCEEEEECCC
T ss_pred             eEEEEEeccC-CChHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEeccccccccccc
Confidence            9999999995 777777765532   26999999999999999999999   9999999999999999            


Q ss_pred             -------CCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          209 -------NEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       209 -------~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                             +.++.+||+|||++.......     ....||+.|+|||.+.+..++.++||||||+++|||+||+.||....
T Consensus       169 ~~~~~~~~~~~~~kl~Dfg~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~  243 (355)
T 2eu9_A          169 KSCEEKSVKNTSIRVADFGSATFDHEHH-----TTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHE  243 (355)
T ss_dssp             -CCCEEEESCCCEEECCCTTCEETTSCC-----CSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             ccccccccCCCcEEEeecCccccccccc-----cCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Confidence                   567899999999998754432     34568999999999999899999999999999999999999998543

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=6.5e-41  Score=302.42  Aligned_cols=206  Identities=16%  Similarity=0.198  Sum_probs=174.4

Q ss_pred             CHHHHHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCc-----hHHHHHHHHHHHHhccC--Ccceeee
Q 038823           62 SAKELEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSD-----SACKFSINNIVYAAQMD--HKHILKL  132 (338)
Q Consensus        62 ~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~-----~~~~~~~~e~~~l~~l~--h~niv~l  132 (338)
                      ...+.....++|.+.+.||+|+||.||+|.+  +++.||+|.+......     .....+.+|+.++++++  |+||+++
T Consensus        34 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~  113 (320)
T 3a99_A           34 PGKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRL  113 (320)
T ss_dssp             ------CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCE
T ss_pred             cccccCCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEE
Confidence            3455566778899999999999999999998  8899999998754211     12245678999999996  5999999


Q ss_pred             eeeeecCCcceEEEeecCC-CCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeC-C
Q 038823          133 IGCCLETPIPILVFEYGEY-TTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFN-E  210 (338)
Q Consensus       133 ~~~~~~~~~~~lv~e~~~~-gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~-~  210 (338)
                      ++++.+.+..++|||++.+ ++|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+|||++ +
T Consensus       114 ~~~~~~~~~~~lv~e~~~~~~~L~~~l~~~~-----~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~  185 (320)
T 3a99_A          114 LDWFERPDSFVLILERPEPVQDLFDFITERG-----ALQEELARSFFWQVLEAVRHCH---NCGVLHRDIKDENILIDLN  185 (320)
T ss_dssp             EEEEECSSEEEEEEECCSSEEEHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETT
T ss_pred             EEEEecCCcEEEEEEcCCCCccHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHH---HCCcEeCCCCHHHEEEeCC
Confidence            9999999999999999986 89999997653     5899999999999999999999   89999999999999999 7


Q ss_pred             CCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCC-CccchHHHHHHHHHHHHhCCCCcCC
Q 038823          211 ENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVF-NEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       211 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ++.+||+|||++........    ....||+.|+|||.+.+..+ +.++||||||+++|||+||+.||..
T Consensus       186 ~~~~kL~Dfg~~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~  251 (320)
T 3a99_A          186 RGELKLIDFGSGALLKDTVY----TDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEH  251 (320)
T ss_dssp             TTEEEECCCTTCEECCSSCB----CCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCS
T ss_pred             CCCEEEeeCccccccccccc----cCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCC
Confidence            89999999999987654322    34568999999999887665 7889999999999999999999974

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.2e-39  Score=301.75  Aligned_cols=204  Identities=16%  Similarity=0.182  Sum_probs=155.1

Q ss_pred             cCCCc-CCccccCCCceEEEEEE----CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeee--cCCcce
Q 038823           71 NNYDE-RKFIKQDSTYKLYKGFW----QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCL--ETPIPI  143 (338)
Q Consensus        71 ~~~~~-~~~lg~G~~g~Vy~~~~----~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~--~~~~~~  143 (338)
                      +.|.+ .++||+|+||.||+|.+    ++..||+|++......   ..+.+|+.+|++++||||+++++++.  .....+
T Consensus        20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~~---~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~   96 (405)
T 3rgf_A           20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGIS---MSACREIALLRELKHPNVISLQKVFLSHADRKVW   96 (405)
T ss_dssp             HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSCC---HHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEE
T ss_pred             hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCCC---HHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEE
Confidence            33555 56899999999999996    4678999999755322   46789999999999999999999995  466789


Q ss_pred             EEEeecCCCCHHHhhhcCC----CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceee----CCCCceE
Q 038823          144 LVFEYGEYTTLRDRIFGAP----QPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILF----NEENVAK  215 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~----~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill----~~~~~~k  215 (338)
                      +||||+. ++|.+++....    ......+++..+..++.||+.||.|||   +.+|+||||||+|||+    +.++.+|
T Consensus        97 lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~k  172 (405)
T 3rgf_A           97 LLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVK  172 (405)
T ss_dssp             EEEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECCSSTTTTCEE
T ss_pred             EEEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeCCCcCHHHeEEecCCCCCCcEE
Confidence            9999998 68888775321    111125999999999999999999999   8999999999999999    6778999


Q ss_pred             EecCCCCcccCCCCce-eeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          216 LFDFSESISIPEGETH-IITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       216 l~Dfg~a~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      |+|||+++........ .......||+.|+|||++.+. .++.++|||||||++|||+||++||....
T Consensus       173 l~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~  240 (405)
T 3rgf_A          173 IADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQ  240 (405)
T ss_dssp             ECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC
T ss_pred             EEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCcc
Confidence            9999999876543221 112456789999999998874 58999999999999999999999997543

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=3.6e-40  Score=299.60  Aligned_cols=197  Identities=16%  Similarity=0.200  Sum_probs=146.5

Q ss_pred             hhcCCCcC-CccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHH-HHHhccCCcceeeeeeeeec----CC
Q 038823           69 ATNNYDER-KFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNI-VYAAQMDHKHILKLIGCCLE----TP  140 (338)
Q Consensus        69 ~~~~~~~~-~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~-~~l~~l~h~niv~l~~~~~~----~~  140 (338)
                      ..++|.+. ++||+|+||.||+|.+  +++.||+|++...      ....+|+ ..++.+.|+||+++++++..    ..
T Consensus        26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~------~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~   99 (336)
T 3fhr_A           26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS------PKARQEVDHHWQASGGPHIVCILDVYENMHHGKR   99 (336)
T ss_dssp             GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEE
T ss_pred             ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc------HHHHHHHHHHHHhcCCCChHHHHHHHhhccCCCc
Confidence            45678884 4699999999999999  6899999998653      1222333 34566789999999999875    44


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC---CCceEEe
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE---ENVAKLF  217 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~---~~~~kl~  217 (338)
                      ..++||||+++|+|.+++.....   ..+++..++.++.|++.||.|||   +.+|+||||||+||+++.   ++.+||+
T Consensus       100 ~~~lv~e~~~gg~L~~~l~~~~~---~~l~~~~~~~i~~ql~~~l~~LH---~~~ivH~dlkp~NIll~~~~~~~~~kl~  173 (336)
T 3fhr_A          100 CLLIIMECMEGGELFSRIQERGD---QAFTEREAAEIMRDIGTAIQFLH---SHNIAHRDVKPENLLYTSKEKDAVLKLT  173 (336)
T ss_dssp             EEEEEEECCTTEEHHHHHHTC-C---CCCBHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEEC
T ss_pred             eEEEEEeccCCCCHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEEecCCCceEEEe
Confidence            58999999999999999987643   26999999999999999999999   899999999999999976   4559999


Q ss_pred             cCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          218 DFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       218 Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      |||++........    ....||+.|+|||.+.+..++.++||||||+++|+|+||+.||....
T Consensus       174 Dfg~~~~~~~~~~----~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  233 (336)
T 3fhr_A          174 DFGFAKETTQNAL----QTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNT  233 (336)
T ss_dssp             CCTTCEEC--------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC----
T ss_pred             ccccceecccccc----ccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCcc
Confidence            9999986654322    34568999999999988889999999999999999999999997544

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=4.7e-40  Score=308.82  Aligned_cols=241  Identities=15%  Similarity=0.190  Sum_probs=173.6

Q ss_pred             CCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcceEEEeecC
Q 038823           73 YDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIPILVFEYGE  150 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~~  150 (338)
                      |...+.||+|+||+||.+.. +|+.||+|++...    ..+.+.+|+.++.++ +||||+++++++.+.+..++||||+.
T Consensus        17 ~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~----~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~   92 (434)
T 2rio_A           17 VVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID----FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN   92 (434)
T ss_dssp             EEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG----GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS
T ss_pred             eeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH----HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC
Confidence            44567899999999976544 8999999998643    235678999999887 79999999999999999999999997


Q ss_pred             CCCHHHhhhcCCCCCC--CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC-------------CceE
Q 038823          151 YTTLRDRIFGAPQPHF--EPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE-------------NVAK  215 (338)
Q Consensus       151 ~gsL~~~l~~~~~~~~--~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~-------------~~~k  215 (338)
                       |+|.+++........  ...++..++.++.||+.||.|||   +.+|+||||||+|||++.+             +.+|
T Consensus        93 -gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~k  168 (434)
T 2rio_A           93 -LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLH---SLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRIL  168 (434)
T ss_dssp             -EEHHHHHHTC------------CCHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEE
T ss_pred             -CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCcccccccccCCCceEEE
Confidence             699999987543110  01133456789999999999999   8999999999999999754             4899


Q ss_pred             EecCCCCcccCCCCcee--eeecccccCCccccccccc-------CCCCccchHHHHHHHHHHHHh-CCCCcCCccCCcc
Q 038823          216 LFDFSESISIPEGETHI--ITRSRFGAWTYSAPEYKRG-------GVFNEKLDVYTFSTVLLELLT-GQSTRDLLRTHGS  285 (338)
Q Consensus       216 l~Dfg~a~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~~~~  285 (338)
                      |+|||++..........  ......||+.|+|||++.+       ..++.++|||||||++|||+| |+.||.....   
T Consensus       169 L~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~---  245 (434)
T 2rio_A          169 ISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYS---  245 (434)
T ss_dssp             ECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTT---
T ss_pred             EcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchh---
Confidence            99999998776543221  1234579999999999865       568999999999999999999 9999975332   


Q ss_pred             cccHHHHHHHHHhcCccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          286 VRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       286 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                        ........   .......         ..........++.+++.+||+.||
T Consensus       246 --~~~~i~~~---~~~~~~~---------~~~~~~~~~~~~~~li~~~L~~dP  284 (434)
T 2rio_A          246 --RESNIIRG---IFSLDEM---------KCLHDRSLIAEATDLISQMIDHDP  284 (434)
T ss_dssp             --HHHHHHHT---CCCCCCC---------TTCCCHHHHHHHHHHHHHHTCSSG
T ss_pred             --hHHHHhcC---CCCcccc---------cccccccchHHHHHHHHHHhhCCh
Confidence              11111111   0011000         001123455678899999999887

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=100.00  E-value=8.5e-40  Score=323.40  Aligned_cols=193  Identities=22%  Similarity=0.272  Sum_probs=168.7

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE---CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCc----
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW---QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPI----  141 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~---~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~----  141 (338)
                      ..++|.+.+.||+|+||.||+|.+   +++.||+|.+...........+.+|+.++++++||||+++++++...+.    
T Consensus        78 ~~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~  157 (681)
T 2pzi_A           78 VAGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDP  157 (681)
T ss_dssp             ETTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCE
T ss_pred             eCCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCc
Confidence            347899999999999999999998   5789999998766555566788999999999999999999999987665    


Q ss_pred             -ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          142 -PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       142 -~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                       .|+||||+++++|.+++..       .+++..++.++.||+.||.|||   +.+|+||||||+|||++.+ .+||+|||
T Consensus       158 ~~~lv~E~~~g~~L~~~~~~-------~l~~~~~~~~~~qi~~aL~~lH---~~giiHrDlkp~NIll~~~-~~kl~DFG  226 (681)
T 2pzi_A          158 VGYIVMEYVGGQSLKRSKGQ-------KLPVAEAIAYLLEILPALSYLH---SIGLVYNDLKPENIMLTEE-QLKLIDLG  226 (681)
T ss_dssp             EEEEEEECCCCEECC----C-------CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECSS-CEEECCCT
T ss_pred             eeEEEEEeCCCCcHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHH---HCCCeecccChHHeEEeCC-cEEEEecc
Confidence             6999999999999887643       4899999999999999999999   8999999999999999875 99999999


Q ss_pred             CCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          221 ESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ++......      ....||+.|+|||++.++. +.++|||||||++|+|++|.+||..
T Consensus       227 ~a~~~~~~------~~~~gt~~y~aPE~~~~~~-~~~sDi~slG~~l~~l~~g~~~~~~  278 (681)
T 2pzi_A          227 AVSRINSF------GYLYGTPGFQAPEIVRTGP-TVATDIYTVGRTLAALTLDLPTRNG  278 (681)
T ss_dssp             TCEETTCC------SCCCCCTTTSCTTHHHHCS-CHHHHHHHHHHHHHHHHSCCCEETT
T ss_pred             cchhcccC------CccCCCccccCHHHHcCCC-CCceehhhhHHHHHHHHhCCCCCcc
Confidence            99876543      3456999999999987654 8999999999999999999999875

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.2e-40  Score=296.60  Aligned_cols=204  Identities=17%  Similarity=0.181  Sum_probs=165.3

Q ss_pred             HHHHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCc-----hHHHHHHHHHHHHhcc----CCcceeee
Q 038823           64 KELEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSD-----SACKFSINNIVYAAQM----DHKHILKL  132 (338)
Q Consensus        64 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~-----~~~~~~~~e~~~l~~l----~h~niv~l  132 (338)
                      .+.....++|.+.+.||+|+||.||+|..  +++.||+|.+......     .....+.+|+.++.++    +|+||+++
T Consensus        24 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~  103 (312)
T 2iwi_A           24 KDREAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRL  103 (312)
T ss_dssp             ---------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCE
T ss_pred             cchhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeE
Confidence            34566678899999999999999999998  7889999999754321     1223456799999998    89999999


Q ss_pred             eeeeecCCcceEEEee-cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeC-C
Q 038823          133 IGCCLETPIPILVFEY-GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFN-E  210 (338)
Q Consensus       133 ~~~~~~~~~~~lv~e~-~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~-~  210 (338)
                      ++++.+.+..++|||+ +.+++|.+++....     .+++..++.++.|++.||.|||   +.+|+||||||+||+++ .
T Consensus       104 ~~~~~~~~~~~~v~e~~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~  175 (312)
T 2iwi_A          104 LDWFETQEGFMLVLERPLPAQDLFDYITEKG-----PLGEGPSRCFFGQVVAAIQHCH---SRGVVHRDIKDENILIDLR  175 (312)
T ss_dssp             EEEC-----CEEEEECCSSEEEHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHH---HHTEECCCCSGGGEEEETT
T ss_pred             EEEEecCCeEEEEEEecCCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCChhhEEEeCC
Confidence            9999999999999999 78999999998754     5999999999999999999999   89999999999999999 8


Q ss_pred             CCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCC-CccchHHHHHHHHHHHHhCCCCcCC
Q 038823          211 ENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVF-NEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       211 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ++.+||+|||++........    ....||..|+|||.+.+..+ +.++||||||+++|+|++|+.||..
T Consensus       176 ~~~~kl~dfg~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~  241 (312)
T 2iwi_A          176 RGCAKLIDFGSGALLHDEPY----TDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFER  241 (312)
T ss_dssp             TTEEEECCCSSCEECCSSCB----CCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCS
T ss_pred             CCeEEEEEcchhhhcccCcc----cccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCC
Confidence            89999999999987654432    44568999999999877665 4589999999999999999999974

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-39  Score=305.11  Aligned_cols=200  Identities=15%  Similarity=0.203  Sum_probs=160.4

Q ss_pred             HhhcCCCcCCccccCCCceE-EEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcceEE
Q 038823           68 IATNNYDERKFIKQDSTYKL-YKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~V-y~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv  145 (338)
                      ....+|...+.||+|+||+| |++..+++.||||++.....    ..+.+|+.+|+++ +||||+++++++.+.+..++|
T Consensus        21 i~~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~----~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv   96 (432)
T 3p23_A           21 VGKISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF----SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIA   96 (432)
T ss_dssp             ETTEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE----EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEE
T ss_pred             EccEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH----HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEE
Confidence            44567888999999999984 55555999999999975422    2256899999999 799999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC-----CCceEEecCC
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE-----ENVAKLFDFS  220 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~-----~~~~kl~Dfg  220 (338)
                      |||+. |+|.+++.....    .+.+..+..++.||+.||.|||   +.+|+||||||+|||++.     ...+||+|||
T Consensus        97 ~E~~~-g~L~~~l~~~~~----~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG  168 (432)
T 3p23_A           97 IELCA-ATLQEYVEQKDF----AHLGLEPITLLQQTTSGLAHLH---SLNIVHRDLKPHNILISMPNAHGKIKAMISDFG  168 (432)
T ss_dssp             EECCS-EEHHHHHHSSSC----CCCSSCHHHHHHHHHHHHHHHH---HTTCCCCCCSTTSEEECCCBTTTBCCEEECCTT
T ss_pred             EECCC-CCHHHHHHhcCC----CccchhHHHHHHHHHHHHHHHH---HCcCEeCCCCHHHEEEecCCCCCceeEEEeccc
Confidence            99998 699999987653    3555567789999999999999   899999999999999953     2358899999


Q ss_pred             CCcccCCCCce-eeeecccccCCcccccccc---cCCCCccchHHHHHHHHHHHHh-CCCCcCC
Q 038823          221 ESISIPEGETH-IITRSRFGAWTYSAPEYKR---GGVFNEKLDVYTFSTVLLELLT-GQSTRDL  279 (338)
Q Consensus       221 ~a~~~~~~~~~-~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~  279 (338)
                      ++......... .......||+.|+|||++.   ...++.++|||||||++|||+| |..||..
T Consensus       169 ~a~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~  232 (432)
T 3p23_A          169 LCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGK  232 (432)
T ss_dssp             EEECC------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBS
T ss_pred             ceeeccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcch
Confidence            99876543221 1224567999999999987   3567889999999999999999 9999964

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=100.00  E-value=5.1e-40  Score=298.49  Aligned_cols=194  Identities=9%  Similarity=0.035  Sum_probs=161.0

Q ss_pred             hhcCCCcCCccccCCCceEEEEEECCeEEEEEEeCcCC-------CchHHHHHHHHHHHHhccC---------Ccc----
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESY-------SDSACKFSINNIVYAAQMD---------HKH----  128 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~-------~~~~~~~~~~e~~~l~~l~---------h~n----  128 (338)
                      ..++|.+.+.||+|+||.||+|+++++.||+|++....       .....+.+.+|+.+++.++         |+|    
T Consensus        18 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l   97 (336)
T 2vuw_A           18 PTEKLQRCEKIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL   97 (336)
T ss_dssp             CHHHHHTCEEEEEETTEEEEEEEETTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred             ccccchheeeecccCceEEEEEEeCCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence            34678889999999999999999999999999997552       2233467889999998886         544    


Q ss_pred             -------------eeeeeeeeec-------------CCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHH
Q 038823          129 -------------ILKLIGCCLE-------------TPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIA  182 (338)
Q Consensus       129 -------------iv~l~~~~~~-------------~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~  182 (338)
                                   |+++++++.+             .+..++||||+++|++.+.+.+.      .+++..+..++.||+
T Consensus        98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~~------~~~~~~~~~i~~qi~  171 (336)
T 2vuw_A           98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTK------LSSLATAKSILHQLT  171 (336)
T ss_dssp             EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTTT------CCCHHHHHHHHHHHH
T ss_pred             cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHhc------CCCHHHHHHHHHHHH
Confidence                         4555554443             67899999999999877776442      589999999999999


Q ss_pred             HHHHHhhcCCCCCeeecCCCCCceeeCCCC--------------------ceEEecCCCCcccCCCCceeeeecccccCC
Q 038823          183 HALAYLHVGFPRPIVFGNLISLCILFNEEN--------------------VAKLFDFSESISIPEGETHIITRSRFGAWT  242 (338)
Q Consensus       183 ~~l~~LH~~~~~~iiH~dik~~Nill~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~  242 (338)
                      .||.|||+  +.+|+||||||+|||++.++                    .+||+|||+|+.....       ...||+.
T Consensus       172 ~aL~~lH~--~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~-------~~~gt~~  242 (336)
T 2vuw_A          172 ASLAVAEA--SLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG-------IVVFCDV  242 (336)
T ss_dssp             HHHHHHHH--HHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT-------EEECCCC
T ss_pred             HHHHHHHH--hCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC-------cEEEeec
Confidence            99999993  37999999999999999887                    8999999999876542       3368999


Q ss_pred             cccccccccCCCCccchHHHHHHH-HHHHHhCCCCcC
Q 038823          243 YSAPEYKRGGVFNEKLDVYTFSTV-LLELLTGQSTRD  278 (338)
Q Consensus       243 y~aPE~~~~~~~~~~~Dv~s~Gv~-l~el~tG~~p~~  278 (338)
                      |+|||.+.+.. +.++||||+|++ .+++++|..||.
T Consensus       243 y~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~  278 (336)
T 2vuw_A          243 SMDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYS  278 (336)
T ss_dssp             TTCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHH
T ss_pred             ccChhhhcCCC-ccceehhhhhCCCCcccccccCCCc
Confidence            99999998766 899999998777 778999999985

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=100.00  E-value=2.3e-38  Score=281.30  Aligned_cols=174  Identities=10%  Similarity=0.038  Sum_probs=153.4

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC--chHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS--DSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      .++|.+.+.||+|+||.||+|.+  +++.||+|.+.....  ....+.+.+|+..+.+++||||+++++++.+.+..++|
T Consensus        30 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv  109 (286)
T 3uqc_A           30 NGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVV  109 (286)
T ss_dssp             TTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEE
Confidence            35799999999999999999999  589999999986543  34457889999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||++|++|.+++...       .....+.+++.|++.||.|||   +.+|+||||||+|||++.++.+||++++     
T Consensus       110 ~e~~~g~~L~~~l~~~-------~~~~~~~~i~~ql~~aL~~lH---~~givH~Dikp~NIll~~~g~~kl~~~~-----  174 (286)
T 3uqc_A          110 AEWIRGGSLQEVADTS-------PSPVGAIRAMQSLAAAADAAH---RAGVALSIDHPSRVRVSIDGDVVLAYPA-----  174 (286)
T ss_dssp             EECCCEEEHHHHHTTC-------CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEETTSCEEECSCC-----
T ss_pred             EEecCCCCHHHHHhcC-------CChHHHHHHHHHHHHHHHHHH---HCCCccCCCCcccEEEcCCCCEEEEecc-----
Confidence            9999999999999542       355678999999999999999   8999999999999999999999998543     


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                                       |++       .++.++|||||||++|||+||+.||.....
T Consensus       175 -----------------~~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~  207 (286)
T 3uqc_A          175 -----------------TMP-------DANPQDDIRGIGASLYALLVNRWPLPEAGV  207 (286)
T ss_dssp             -----------------CCT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSB
T ss_pred             -----------------ccC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCc
Confidence                             333       378999999999999999999999986544

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=100.00  E-value=3.4e-37  Score=275.37  Aligned_cols=176  Identities=15%  Similarity=0.235  Sum_probs=151.5

Q ss_pred             hcCCCcC-CccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHH-hccCCcceeeeeeeeec----CCc
Q 038823           70 TNNYDER-KFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYA-AQMDHKHILKLIGCCLE----TPI  141 (338)
Q Consensus        70 ~~~~~~~-~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l-~~l~h~niv~l~~~~~~----~~~  141 (338)
                      .++|.+. +.||+|+||.||+|..  ++..||+|.+...      ..+.+|+.++ +.++||||+++++++..    ...
T Consensus        16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~------~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~   89 (299)
T 3m2w_A           16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC------PKARREVELHWRASQCPHIVRIVDVYENLYAGRKC   89 (299)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEE
T ss_pred             ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc------HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCce
Confidence            3557666 7899999999999999  7889999999653      4567888888 55689999999999876    667


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC---CCceEEec
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE---ENVAKLFD  218 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~---~~~~kl~D  218 (338)
                      .++||||+++|+|.+++.....   ..+++..+..++.|++.||.|||   +.+|+||||||+||+++.   ++.+||+|
T Consensus        90 ~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~kl~D  163 (299)
T 3m2w_A           90 LLIVMECLDGGELFSRIQDRGD---QAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTD  163 (299)
T ss_dssp             EEEEECCCCSCBHHHHHHHCTT---CCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECC
T ss_pred             EEEEEeecCCCcHHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEecCCCCCcEEEec
Confidence            8999999999999999987543   26999999999999999999999   899999999999999998   78899999


Q ss_pred             CCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          219 FSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       219 fg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ||++....                        +..++.++|||||||++|||+||+.||....
T Consensus       164 fg~a~~~~------------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~  202 (299)
T 3m2w_A          164 FGFAKETT------------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNH  202 (299)
T ss_dssp             CTTCEECT------------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC--
T ss_pred             cccccccc------------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCc
Confidence            99885432                        2346789999999999999999999997543

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=4e-38  Score=293.87  Aligned_cols=204  Identities=13%  Similarity=0.098  Sum_probs=156.2

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC--chHHHHHHHHHHHHhccCC-cceeeee---------
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS--DSACKFSINNIVYAAQMDH-KHILKLI---------  133 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~--~~~~~~~~~e~~~l~~l~h-~niv~l~---------  133 (338)
                      ..+.+|...++||+|+||.||+|.+  +++.||||++.....  ....+.+.+|+.+++.++| +|.....         
T Consensus        75 ~~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~  154 (413)
T 3dzo_A           75 ERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPF  154 (413)
T ss_dssp             SCCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCC
T ss_pred             CCceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccch
Confidence            3445677888999999999999998  699999999884432  2235778999999999987 3221111         


Q ss_pred             ------------eeeec-----CCcceEEEeecCCCCHHHhhhcCC--CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC
Q 038823          134 ------------GCCLE-----TPIPILVFEYGEYTTLRDRIFGAP--QPHFEPLLLKHRLKVAMGIAHALAYLHVGFPR  194 (338)
Q Consensus       134 ------------~~~~~-----~~~~~lv~e~~~~gsL~~~l~~~~--~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~  194 (338)
                                  .++..     ....+++|+++. ++|.+++....  ......+++..++.++.|++.||.|||   +.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~  230 (413)
T 3dzo_A          155 DLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQ-SNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HY  230 (413)
T ss_dssp             EEEECCC---------------CCSEEEEEECCS-EEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHH---HT
T ss_pred             hhcccCCCCccccccCCCccccccceEEEeehhc-CCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHH---hC
Confidence                        11111     123567777665 89999884110  000126889999999999999999999   89


Q ss_pred             CeeecCCCCCceeeCCCCceEEecCCCCcccCCCCceeeeecccccCCccccccc----------ccCCCCccchHHHHH
Q 038823          195 PIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYK----------RGGVFNEKLDVYTFS  264 (338)
Q Consensus       195 ~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~~~~~Dv~s~G  264 (338)
                      +|+||||||+|||++.++.+||+|||+++.....     .....| +.|+|||++          ....++.++||||||
T Consensus       231 ~iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~-----~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlG  304 (413)
T 3dzo_A          231 GLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS-----AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLG  304 (413)
T ss_dssp             TEECSCCCGGGEEECTTCCEEECCGGGCEETTEE-----ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHH
T ss_pred             CcccCCcccceEEEecCCeEEEEeccceeecCCc-----cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHH
Confidence            9999999999999999999999999998765432     244567 999999998          555688999999999


Q ss_pred             HHHHHHHhCCCCcCCcc
Q 038823          265 TVLLELLTGQSTRDLLR  281 (338)
Q Consensus       265 v~l~el~tG~~p~~~~~  281 (338)
                      |++|||+||+.||....
T Consensus       305 vil~elltg~~Pf~~~~  321 (413)
T 3dzo_A          305 LAIYWIWCADLPNTDDA  321 (413)
T ss_dssp             HHHHHHHHSSCCCCTTG
T ss_pred             HHHHHHHHCCCCCCCcc
Confidence            99999999999997644

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=100.00  E-value=2e-34  Score=278.27  Aligned_cols=184  Identities=11%  Similarity=-0.012  Sum_probs=130.8

Q ss_pred             cccCCCceEEEEEE--CCeEEEEEEeCcCC---------CchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcceEEE
Q 038823           79 IKQDSTYKLYKGFW--QERLISVMKYNESY---------SDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        79 lg~G~~g~Vy~~~~--~~~~vaik~~~~~~---------~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      .+.|++|.+..+..  .|+.+++|.+....         .....+++.+|+++|+++ .|+||+++++++.+++..||||
T Consensus       242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVM  321 (569)
T 4azs_A          242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVM  321 (569)
T ss_dssp             -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEE
T ss_pred             cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEE
Confidence            45556665555444  67889999986542         122356799999999999 6999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||++|++|.++|...+     +++..   +|+.||+.||.|||   +.+||||||||+|||++.+|.+||+|||+|+...
T Consensus       322 Eyv~G~~L~d~i~~~~-----~l~~~---~I~~QIl~AL~ylH---~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~  390 (569)
T 4azs_A          322 EKLPGRLLSDMLAAGE-----EIDRE---KILGSLLRSLAALE---KQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTP  390 (569)
T ss_dssp             ECCCSEEHHHHHHTTC-----CCCHH---HHHHHHHHHHHHHH---HTTCEESCCCGGGEEECTTSCEEECCCTTEESCC
T ss_pred             ecCCCCcHHHHHHhCC-----CCCHH---HHHHHHHHHHHHHH---HCCceeccCchHhEEECCCCCEEEeecccCeeCC
Confidence            9999999999998764     57665   48899999999999   9999999999999999999999999999998765


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCC
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQST  276 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p  276 (338)
                      .....  .....||+.|+|||++.+ .+..++|+||+|++++++.+|..|
T Consensus       391 ~~~~~--~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~  437 (569)
T 4azs_A          391 QDCSW--PTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSN  437 (569)
T ss_dssp             ---CC--SHHHHHHHHHHHHHHC------------------CCCCTTHHH
T ss_pred             CCCcc--ccCceechhhccHHHhCC-CCCCcccccccccchhhhccccch
Confidence            44322  245679999999999875 467789999999998887666544

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.96  E-value=1.2e-30  Score=250.54  Aligned_cols=186  Identities=11%  Similarity=0.096  Sum_probs=149.4

Q ss_pred             cCCccccCCCceEEEEEECCeEEEEEEeCcCC-Cch------HHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           75 ERKFIKQDSTYKLYKGFWQERLISVMKYNESY-SDS------ACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        75 ~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~-~~~------~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      ..++||+|+||.||+|...+..+++|+..... ...      ..+.+.+|+.++++++||||+++..++...+..++|||
T Consensus       340 ~~~~LG~G~fg~Vy~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lVmE  419 (540)
T 3en9_A          340 PEHLIGKGAEADIKRDSYLDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIMMS  419 (540)
T ss_dssp             --------CCEEEEEEECSSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEEEE
T ss_pred             CCCEEeeCCCEEEEEEEECCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEEEE
Confidence            45689999999999998888899999875432 111      23558999999999999999977777777788899999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |+++++|.+++..             +..++.|++.||.|||   +.+|+||||||+|||++.  .+||+|||+++....
T Consensus       420 ~~~ggsL~~~l~~-------------~~~i~~qi~~aL~~LH---~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~  481 (540)
T 3en9_A          420 YINGKLAKDVIED-------------NLDIAYKIGEIVGKLH---KNDVIHNDLTTSNFIFDK--DLYIIDFGLGKISNL  481 (540)
T ss_dssp             CCCSEEHHHHSTT-------------CTHHHHHHHHHHHHHH---HTTEECTTCCTTSEEESS--SEEECCCTTCEECCC
T ss_pred             CCCCCCHHHHHHH-------------HHHHHHHHHHHHHHHH---HCcCccCCCCHHHEEECC--eEEEEECccCEECCC
Confidence            9999999999854             4579999999999999   899999999999999998  999999999998765


Q ss_pred             CCcee-----eeecccccCCccccccccc--CCCCccchHHHHHHHHHHHHhCCCCcC
Q 038823          228 GETHI-----ITRSRFGAWTYSAPEYKRG--GVFNEKLDVYTFSTVLLELLTGQSTRD  278 (338)
Q Consensus       228 ~~~~~-----~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~Gv~l~el~tG~~p~~  278 (338)
                      .....     ......||+.|+|||++..  ..|+..+|+||..+-.++-+.++.+|.
T Consensus       482 ~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~  539 (540)
T 3en9_A          482 DEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV  539 (540)
T ss_dssp             HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred             ccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence            43211     1135679999999999976  558888999999999999988887764

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.93  E-value=5.1e-26  Score=201.06  Aligned_cols=153  Identities=14%  Similarity=0.061  Sum_probs=121.6

Q ss_pred             HHHHHhhcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCc-----------------hHHHHHHHHHHHHhccC
Q 038823           64 KELEIATNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSD-----------------SACKFSINNIVYAAQMD  125 (338)
Q Consensus        64 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~-----------------~~~~~~~~e~~~l~~l~  125 (338)
                      ..+......|.+.+.||+|+||.||+|.+ +++.||+|.+......                 .....+.+|+.++++++
T Consensus        83 ~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~  162 (282)
T 1zar_A           83 HRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ  162 (282)
T ss_dssp             HHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc
Confidence            34444555666779999999999999999 7899999999643211                 13467899999999999


Q ss_pred             CcceeeeeeeeecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCc
Q 038823          126 HKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLC  205 (338)
Q Consensus       126 h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~N  205 (338)
                        | +++.+++. .+..++||||++|++|.+ +..           .....++.|++.||.|||   +.+|+||||||+|
T Consensus       163 --~-~~v~~~~~-~~~~~lvmE~~~g~~L~~-l~~-----------~~~~~i~~qi~~~l~~lH---~~giiHrDlkp~N  223 (282)
T 1zar_A          163 --G-LAVPKVYA-WEGNAVLMELIDAKELYR-VRV-----------ENPDEVLDMILEEVAKFY---HRGIVHGDLSQYN  223 (282)
T ss_dssp             --T-SSSCCEEE-EETTEEEEECCCCEEGGG-CCC-----------SCHHHHHHHHHHHHHHHH---HTTEECSCCSTTS
T ss_pred             --C-CCcCeEEe-ccceEEEEEecCCCcHHH-cch-----------hhHHHHHHHHHHHHHHHH---HCCCEeCCCCHHH
Confidence              5 67776554 356799999999999998 421           123469999999999999   8999999999999


Q ss_pred             eeeCCCCceEEecCCCCcccCCCCceeeeecccccCCccccccccc
Q 038823          206 ILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRG  251 (338)
Q Consensus       206 ill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  251 (338)
                      ||++ ++.+||+|||+|+..               ..++|||++..
T Consensus       224 ILl~-~~~vkl~DFG~a~~~---------------~~~~a~e~l~r  253 (282)
T 1zar_A          224 VLVS-EEGIWIIDFPQSVEV---------------GEEGWREILER  253 (282)
T ss_dssp             EEEE-TTEEEECCCTTCEET---------------TSTTHHHHHHH
T ss_pred             EEEE-CCcEEEEECCCCeEC---------------CCCCHHHHHHH
Confidence            9999 999999999998643               24678888753

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.84  E-value=5.1e-21  Score=166.86  Aligned_cols=139  Identities=10%  Similarity=0.080  Sum_probs=107.6

Q ss_pred             CCcCCccccCCCceEEEEEE--CCeE--EEEEEeCcCCCc-----------------------hHHHHHHHHHHHHhccC
Q 038823           73 YDERKFIKQDSTYKLYKGFW--QERL--ISVMKYNESYSD-----------------------SACKFSINNIVYAAQMD  125 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~--~~~~--vaik~~~~~~~~-----------------------~~~~~~~~e~~~l~~l~  125 (338)
                      |.+.+.||+|+||.||+|.+  +|..  ||+|++......                       .....+.+|+..|.++.
T Consensus        49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~  128 (258)
T 1zth_A           49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK  128 (258)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence            56778999999999999998  8888  999987543111                       11236789999999998


Q ss_pred             Ccce--eeeeeeeecCCcceEEEeecCC-C----CHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeee
Q 038823          126 HKHI--LKLIGCCLETPIPILVFEYGEY-T----TLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVF  198 (338)
Q Consensus       126 h~ni--v~l~~~~~~~~~~~lv~e~~~~-g----sL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH  198 (338)
                      |+++  +.++++    +..++||||+.+ |    +|.++...        .++..+..++.|++.||.|||.  ..+|+|
T Consensus       129 ~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~--------~~~~~~~~i~~qi~~~l~~lH~--~~givH  194 (258)
T 1zth_A          129 EAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE--------LKELDVEGIFNDVVENVKRLYQ--EAELVH  194 (258)
T ss_dssp             HTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG--------GGGSCHHHHHHHHHHHHHHHHH--TSCEEC
T ss_pred             hCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc--------cChHHHHHHHHHHHHHHHHHHH--HCCEEe
Confidence            8764  444443    367899999942 4    67666432        2244677899999999999994  469999


Q ss_pred             cCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          199 GNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       199 ~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |||||+|||++.  .++|+|||+|.....
T Consensus       195 rDlkp~NILl~~--~~~liDFG~a~~~~~  221 (258)
T 1zth_A          195 ADLSEYNIMYID--KVYFIDMGQAVTLRH  221 (258)
T ss_dssp             SSCSTTSEEESS--SEEECCCTTCEETTS
T ss_pred             CCCCHHHEEEcC--cEEEEECcccccCCC
Confidence            999999999988  999999999976543

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.76  E-value=2.8e-19  Score=162.66  Aligned_cols=147  Identities=9%  Similarity=0.062  Sum_probs=101.7

Q ss_pred             HHHhhcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCC-------------chHHHH--------HHHHHHHHhc
Q 038823           66 LEIATNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYS-------------DSACKF--------SINNIVYAAQ  123 (338)
Q Consensus        66 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~-------------~~~~~~--------~~~e~~~l~~  123 (338)
                      +..-..=|.+.+.||+|++|.||+|.. +|+.||||++.....             ......        ..+|...|.+
T Consensus        90 L~~rg~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~r  169 (397)
T 4gyi_A           90 HAARKDVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKA  169 (397)
T ss_dssp             HHHTTSCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence            333333488899999999999999998 899999998753210             000111        2345555555


Q ss_pred             cCCcceeeeeeeeecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCC
Q 038823          124 MDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLIS  203 (338)
Q Consensus       124 l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~  203 (338)
                      +.+.++.-..-+.  ....+|||||++|++|.++..         .+  ....++.|++.+|.+||   ..+||||||||
T Consensus       170 L~~~gv~vp~p~~--~~~~~LVME~i~G~~L~~l~~---------~~--~~~~l~~qll~~l~~lH---~~gIVHrDLKp  233 (397)
T 4gyi_A          170 LYEEGFPVPEPIA--QSRHTIVMSLVDALPMRQVSS---------VP--DPASLYADLIALILRLA---KHGLIHGDFNE  233 (397)
T ss_dssp             HHHTTCSCCCEEE--EETTEEEEECCSCEEGGGCCC---------CS--CHHHHHHHHHHHHHHHH---HTTEECSCCST
T ss_pred             HHhcCCCCCeeee--ccCceEEEEecCCccHhhhcc---------cH--HHHHHHHHHHHHHHHHH---HCCCcCCCCCH
Confidence            5433332111111  123479999999988876542         11  23467899999999999   88999999999


Q ss_pred             CceeeCCCC----------ceEEecCCCCcccCCC
Q 038823          204 LCILFNEEN----------VAKLFDFSESISIPEG  228 (338)
Q Consensus       204 ~Nill~~~~----------~~kl~Dfg~a~~~~~~  228 (338)
                      .|||+++++          .+.|+||+-+....++
T Consensus       234 ~NILl~~dgd~~d~~~~~~~~~iID~~Q~V~~~hp  268 (397)
T 4gyi_A          234 FNILIREEKDAEDPSSITLTPIIIXFPQMVSMDHP  268 (397)
T ss_dssp             TSEEEEEEECSSCTTSEEEEEEECCCTTCEETTST
T ss_pred             HHEEEeCCCCcccccccccceEEEEeCCcccCCCC
Confidence            999998776          3899999988765443

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.46  E-value=1.3e-13  Score=119.93  Aligned_cols=145  Identities=12%  Similarity=0.030  Sum_probs=112.6

Q ss_pred             hhcCCCcCCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-CcceeeeeeeeecCCcceEEEe
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      .-.+|.....++.|+.+.||++...++.+++|........ ....+.+|+.+++.+. +..++++++++.+.+..|+|||
T Consensus        12 ~l~~~~~~~~~~g~s~~~v~~~~~~~~~~vlK~~~~~~~~-~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e   90 (263)
T 3tm0_A           12 LIEKYRCVKDTEGMSPAKVYKLVGENENLYLKMTDSRYKG-TTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMS   90 (263)
T ss_dssp             HHTTSEEEECCSCCSSSEEEEEECSSCEEEEEEECGGGTT-STTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEE
T ss_pred             HhccceeEeeccCCCCCeEEEEECCCCcEEEEeCCcccCC-CHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEEE
Confidence            3356877778888889999999887889999998753211 1135788999999885 6778899999988888999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC------------------------------------
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVG------------------------------------  191 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~------------------------------------  191 (338)
                      |++|.+|.+.+..          ......++.+++.+|..||.-                                    
T Consensus        91 ~i~G~~l~~~~~~----------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (263)
T 3tm0_A           91 EADGVLCSEEYED----------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEE  160 (263)
T ss_dssp             CCSSEEHHHHCCT----------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGST
T ss_pred             ecCCeehhhccCC----------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccc
Confidence            9999999876421          122346888999999999961                                    


Q ss_pred             --------------------CCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          192 --------------------FPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       192 --------------------~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                                          ....++|+|++|.||+++++..+.|+||+.+..
T Consensus       161 ~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~  213 (263)
T 3tm0_A          161 DTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR  213 (263)
T ss_dssp             TCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             cccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhccc
Confidence                                014599999999999998765677999987643

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.33  E-value=2.7e-12  Score=111.16  Aligned_cols=137  Identities=11%  Similarity=-0.037  Sum_probs=99.3

Q ss_pred             cCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcc--eeeeeeeeecCCcceEEEe
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKH--ILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~l~~~~~~~~~~~lv~e  147 (338)
                      .++....+.+.|..+.||++.. +|..+++|..... .   ...+.+|+.+++.+.+.+  +++++++...++..++|||
T Consensus        20 ~~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~-~---~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e   95 (264)
T 1nd4_A           20 FGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG-A---LNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLG   95 (264)
T ss_dssp             TTCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC-T---TSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEE
T ss_pred             CCCceEecccCCCCceEEEEecCCCCeEEEEeCCcc-c---chhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEE
Confidence            3454433334566699999987 5677999997654 1   134678899998886544  5668888888778899999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC-----------------------------------
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGF-----------------------------------  192 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~-----------------------------------  192 (338)
                      |++|.+|.  ..        ..+.   ..++.+++..|..||...                                   
T Consensus        96 ~i~G~~l~--~~--------~~~~---~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (264)
T 1nd4_A           96 EVPGQDLL--SS--------HLAP---AEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEH  162 (264)
T ss_dssp             CCSSEETT--TS--------CCCH---HHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGG
T ss_pred             ecCCcccC--cC--------cCCH---hHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhc
Confidence            99998884  21        1222   257778888888888421                                   


Q ss_pred             --------------------CCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          193 --------------------PRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       193 --------------------~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                                          ...++|+|++|.||++++++.+.|+||+.+..
T Consensus       163 ~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~  214 (264)
T 1nd4_A          163 QGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV  214 (264)
T ss_dssp             TTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             cCccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence                                11299999999999998776678999998754

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=99.33  E-value=5.3e-12  Score=114.90  Aligned_cols=145  Identities=12%  Similarity=0.074  Sum_probs=109.1

Q ss_pred             cCCccccCCCceEEEEEECCeEEEEEEeC--cCCCchHHHHHHHHHHHHhccC--CcceeeeeeeeecC---CcceEEEe
Q 038823           75 ERKFIKQDSTYKLYKGFWQERLISVMKYN--ESYSDSACKFSINNIVYAAQMD--HKHILKLIGCCLET---PIPILVFE  147 (338)
Q Consensus        75 ~~~~lg~G~~g~Vy~~~~~~~~vaik~~~--~~~~~~~~~~~~~e~~~l~~l~--h~niv~l~~~~~~~---~~~~lv~e  147 (338)
                      ..+.|+.|.++.||+....+..+++|+..  ..........+.+|+.+++.+.  +..++++++++.+.   +..++|||
T Consensus        42 ~~~~l~~G~sn~~y~v~~~~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme  121 (359)
T 3dxp_A           42 SVEQFKGGQSNPTFKLVTPGQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIME  121 (359)
T ss_dssp             EEEECCC-CCSCEEEEECSSCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEE
T ss_pred             eEEEcCCcccceEEEEEECCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEE
Confidence            34678999999999998877788888876  3322222356788999999987  45688899988776   45899999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC-----------------------------------
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGF-----------------------------------  192 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~-----------------------------------  192 (338)
                      |++|..+.+...       ..++...+..++.+++..|..||...                                   
T Consensus       122 ~v~G~~l~~~~~-------~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (359)
T 3dxp_A          122 FVSGRVLWDQSL-------PGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESI  194 (359)
T ss_dssp             CCCCBCCCCTTC-------TTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCC
T ss_pred             ecCCeecCCCcc-------ccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCC
Confidence            999877754211       24778889999999999999999620                                   


Q ss_pred             --------------------CCCeeecCCCCCceeeCCCCc--eEEecCCCCcccC
Q 038823          193 --------------------PRPIVFGNLISLCILFNEENV--AKLFDFSESISIP  226 (338)
Q Consensus       193 --------------------~~~iiH~dik~~Nill~~~~~--~kl~Dfg~a~~~~  226 (338)
                                          ...++|+|++|.||+++.++.  +.|+||+.+....
T Consensus       195 ~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~g~  250 (359)
T 3dxp_A          195 PAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTLGH  250 (359)
T ss_dssp             HHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEEEC
T ss_pred             hHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECccccccCC
Confidence                                257999999999999997753  6899999887543

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=99.17  E-value=6.1e-11  Score=105.38  Aligned_cols=188  Identities=13%  Similarity=0.125  Sum_probs=124.6

Q ss_pred             CCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-Ccc--eeeeeeeeecCC---cceEEEeec
Q 038823           76 RKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKH--ILKLIGCCLETP---IPILVFEYG  149 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h~n--iv~l~~~~~~~~---~~~lv~e~~  149 (338)
                      .+.++.|....||+..   ..+++|.....   .....+.+|+.+|+.+. +..  +.+++......+   ..|+||+++
T Consensus        25 i~~~~~G~~n~v~~v~---~~~vlR~~~~~---~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i   98 (304)
T 3sg8_A           25 IEISGEGNDCIAYEIN---RDFIFKFPKHS---RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKI   98 (304)
T ss_dssp             CCEEEECSSEEEEEST---TSEEEEEESSH---HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECC
T ss_pred             eEecCCCCcceEEEEC---CEEEEEecCCc---chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEccc
Confidence            4568999999999864   56888886532   34467889999998884 333  455555544433   358999999


Q ss_pred             CCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC--------------------------------------
Q 038823          150 EYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVG--------------------------------------  191 (338)
Q Consensus       150 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~--------------------------------------  191 (338)
                      +|.+|.+....       .++..++..++.+++..|..||..                                      
T Consensus        99 ~G~~l~~~~~~-------~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (304)
T 3sg8_A           99 KGVPLTPLLLN-------NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMK  171 (304)
T ss_dssp             CCEECCHHHHH-------TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred             CCeECCccccc-------cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHH
Confidence            99888754321       467788888889999988888851                                      


Q ss_pred             -----------------CCCCeeecCCCCCceeeCC--CCceEEecCCCCcccCCCCceeeeec------------cccc
Q 038823          192 -----------------FPRPIVFGNLISLCILFNE--ENVAKLFDFSESISIPEGETHIITRS------------RFGA  240 (338)
Q Consensus       192 -----------------~~~~iiH~dik~~Nill~~--~~~~kl~Dfg~a~~~~~~~~~~~~~~------------~~gt  240 (338)
                                       ....++|+|++|.||+++.  ...+.|+||+.+..............            ....
T Consensus       172 ~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~  251 (304)
T 3sg8_A          172 KVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNH  251 (304)
T ss_dssp             HHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHHH
Confidence                             1135899999999999998  45688999998876533211000000            0000


Q ss_pred             CCccc-ccccccCCCCccchHHHHHHHHHHHHhCCCCcC
Q 038823          241 WTYSA-PEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRD  278 (338)
Q Consensus       241 ~~y~a-PE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~  278 (338)
                      ++... |+....  .....+.|++|.++|.+.+|..+|.
T Consensus       252 Y~~~~~~~~~~r--~~~~~~~~~l~~~~~~~~~g~~~~~  288 (304)
T 3sg8_A          252 YKHKDIPTVLEK--YRMKEKYWSFEKIIYGKEYGYMDWY  288 (304)
T ss_dssp             HTCSCHHHHHHH--HHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cCCCCcHHHHHH--HHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            01111 111110  1223689999999999999998874

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.68  E-value=9.6e-08  Score=82.93  Aligned_cols=134  Identities=10%  Similarity=-0.031  Sum_probs=97.1

Q ss_pred             ccccCCCc-eEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-CcceeeeeeeeecCCcceEEEeecCCCC
Q 038823           78 FIKQDSTY-KLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCLETPIPILVFEYGEYTT  153 (338)
Q Consensus        78 ~lg~G~~g-~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~gs  153 (338)
                      .+..|..| .||+...  ++..+.+|.-...    ....+.+|...|+.+. +--+.++++++.+.+..++|||+++|.+
T Consensus        31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~----~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~  106 (272)
T 4gkh_A           31 RDNVGQSGATIYRLYGKPNAPELFLKHGKGS----VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKT  106 (272)
T ss_dssp             EEECSSSSCEEEEEECCTTCCCEEEEEEETH----HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEE
T ss_pred             EccCCCcCCeEEEEEecCCCeEEEEEECCCC----CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCcc
Confidence            34556555 6898776  4567888886433    2356788999988885 4447788999988889999999999988


Q ss_pred             HHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC-----------------------------------------
Q 038823          154 LRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGF-----------------------------------------  192 (338)
Q Consensus       154 L~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~-----------------------------------------  192 (338)
                      +.+.....         ......++.+++..|.-||...                                         
T Consensus       107 ~~~~~~~~---------~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (272)
T 4gkh_A          107 AFQVLEEY---------PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVE  177 (272)
T ss_dssp             HHHHHHHC---------GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHH
T ss_pred             ccccccCC---------HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHH
Confidence            87765332         1233456667777777777320                                         


Q ss_pred             --------------CCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          193 --------------PRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       193 --------------~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                                    ...++|+|+.+.||+++.++.+-|+||+.+..
T Consensus       178 ~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~  223 (272)
T 4gkh_A          178 QVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI  223 (272)
T ss_dssp             HHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             HHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECccccc
Confidence                          11379999999999999877778999997754

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.64  E-value=2.5e-07  Score=81.99  Aligned_cols=137  Identities=11%  Similarity=0.020  Sum_probs=97.2

Q ss_pred             CccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCc---ceeeeeeeee-cCCcceEEEeecCCC
Q 038823           77 KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHK---HILKLIGCCL-ETPIPILVFEYGEYT  152 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~---niv~l~~~~~-~~~~~~lv~e~~~~g  152 (338)
                      ..++.|....||+.   +..+++|+..   .......+.+|+.+|+.+.+.   .+.+.+.++. ..+..++|||+++|.
T Consensus        25 ~~l~~G~~n~v~~v---g~~~VlR~~~---~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G~   98 (306)
T 3tdw_A           25 ESLGEGFRNYAILV---NGDWVFRFPK---SQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQGQ   98 (306)
T ss_dssp             EEEEECSSEEEEEE---TTTEEEEEES---SHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCSE
T ss_pred             eecCCCcceeEEEE---CCEEEEEecC---CchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCCe
Confidence            45788888899988   5678888853   233446788999999999742   3667777764 455678999999998


Q ss_pred             CHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC-----------------------------------------
Q 038823          153 TLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVG-----------------------------------------  191 (338)
Q Consensus       153 sL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~-----------------------------------------  191 (338)
                      +|.+....       .++......++.+++..|..||..                                         
T Consensus        99 ~l~~~~~~-------~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~  171 (306)
T 3tdw_A           99 ILGEDGMA-------VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDY  171 (306)
T ss_dssp             ECHHHHHT-------TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHH
T ss_pred             ECchhhhh-------hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence            88763211       245555556666666666666532                                         


Q ss_pred             ----------------CCCCeeecCCCCCceeeCC---CCc-eEEecCCCCcccC
Q 038823          192 ----------------FPRPIVFGNLISLCILFNE---ENV-AKLFDFSESISIP  226 (338)
Q Consensus       192 ----------------~~~~iiH~dik~~Nill~~---~~~-~kl~Dfg~a~~~~  226 (338)
                                      ....++|+|+.|.||+++.   ++. +.|+||+.+....
T Consensus       172 l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~gd  226 (306)
T 3tdw_A          172 LTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAISD  226 (306)
T ss_dssp             HHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEEEC
T ss_pred             HHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCCCC
Confidence                            1335699999999999987   455 5899999876644

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=98.40  E-value=4.7e-07  Score=81.92  Aligned_cols=80  Identities=5%  Similarity=-0.125  Sum_probs=55.0

Q ss_pred             Ccc-ccCCCceEEEEEEC--------CeEEEEEEeCcCCC--chHHHHHHHHHHHHhccC-C--cceeeeeeeeecC---
Q 038823           77 KFI-KQDSTYKLYKGFWQ--------ERLISVMKYNESYS--DSACKFSINNIVYAAQMD-H--KHILKLIGCCLET---  139 (338)
Q Consensus        77 ~~l-g~G~~g~Vy~~~~~--------~~~vaik~~~~~~~--~~~~~~~~~e~~~l~~l~-h--~niv~l~~~~~~~---  139 (338)
                      +.| +.|....+|+....        ++.+++|.......  ......+.+|+.+++.+. +  -.+.++++++.+.   
T Consensus        26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~~  105 (357)
T 3ats_A           26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDVL  105 (357)
T ss_dssp             EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTTT
T ss_pred             EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCcc
Confidence            457 78888999998764        67788887654310  001134677888888875 3  3577788887665   


Q ss_pred             CcceEEEeecCCCCHHH
Q 038823          140 PIPILVFEYGEYTTLRD  156 (338)
Q Consensus       140 ~~~~lv~e~~~~gsL~~  156 (338)
                      +..++||||++|..+.+
T Consensus       106 g~~~~v~e~l~G~~l~~  122 (357)
T 3ats_A          106 GTPFFLMDYVEGVVPPD  122 (357)
T ss_dssp             SSCEEEEECCCCBCCCB
T ss_pred             CCceEEEEecCCCChhh
Confidence            35789999999877653

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=98.24  E-value=5.5e-06  Score=76.04  Aligned_cols=75  Identities=7%  Similarity=-0.028  Sum_probs=49.7

Q ss_pred             CCccccCCCceEEEEEE--CCeEEEEEEeCcCCC------chHHHHHHHHHHHHhccCC--c-ceeeeeeeeecCCcceE
Q 038823           76 RKFIKQDSTYKLYKGFW--QERLISVMKYNESYS------DSACKFSINNIVYAAQMDH--K-HILKLIGCCLETPIPIL  144 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~------~~~~~~~~~e~~~l~~l~h--~-niv~l~~~~~~~~~~~l  144 (338)
                      .+.||.|..+.||++..  +++.+++|.......      .....++..|..+|+.+..  + .+++++.+  +.+..++
T Consensus        35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l  112 (397)
T 2olc_A           35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT  112 (397)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred             EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence            45789999999999965  567899998653211      1122456778888887742  3 44566654  3445689


Q ss_pred             EEeecCCC
Q 038823          145 VFEYGEYT  152 (338)
Q Consensus       145 v~e~~~~g  152 (338)
                      |||++++.
T Consensus       113 vmE~l~g~  120 (397)
T 2olc_A          113 VMEDLSHL  120 (397)
T ss_dssp             EECCCTTS
T ss_pred             EEEeCCCc
Confidence            99999863

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=98.20  E-value=1.6e-05  Score=70.99  Aligned_cols=144  Identities=8%  Similarity=0.014  Sum_probs=81.5

Q ss_pred             CccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCC--cceeeeeee------eecCCcceEEEee
Q 038823           77 KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDH--KHILKLIGC------CLETPIPILVFEY  148 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h--~niv~l~~~------~~~~~~~~lv~e~  148 (338)
                      ..|+.|..+.||+...+++.+++|.....  .   .....|..++..|..  -.+++++..      ....+..+++|+|
T Consensus        38 ~~l~gG~~n~~~~v~~~~~~~vlk~~~~~--~---~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~  112 (346)
T 2q83_A           38 DVIQGNQMALVWKVHTDSGAVCLKRIHRP--E---KKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDW  112 (346)
T ss_dssp             EECC----CEEEEEEETTEEEEEEEECSC--H---HHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEEC
T ss_pred             eeccccccCcEEEEEeCCCCEEEEecCCC--H---HHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEe
Confidence            34666778899999887777999998752  1   233345555555531  123444431      1235567899999


Q ss_pred             cCCCCHH--------------Hhhhc--CCC--CC-----CCCCCHHHH-------------------------------
Q 038823          149 GEYTTLR--------------DRIFG--APQ--PH-----FEPLLLKHR-------------------------------  174 (338)
Q Consensus       149 ~~~gsL~--------------~~l~~--~~~--~~-----~~~l~~~~~-------------------------------  174 (338)
                      ++|.++.              ..++.  ...  +.     .....|...                               
T Consensus       113 i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  192 (346)
T 2q83_A          113 IEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQEI  192 (346)
T ss_dssp             CCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             ecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence            9976542              01111  000  00     001123211                               


Q ss_pred             HHHHHHHHHHHHHhhc----------CCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          175 LKVAMGIAHALAYLHV----------GFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       175 ~~i~~~i~~~l~~LH~----------~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      ..+...+..++.+|+.          .....++|+|+.+.||+++.++.+.|+||+.+...
T Consensus       193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~~g  253 (346)
T 2q83_A          193 DGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVSFD  253 (346)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCEEC
T ss_pred             HHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcccC
Confidence            0111223445666652          12678999999999999988889999999977543

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=97.98  E-value=4.7e-05  Score=67.43  Aligned_cols=140  Identities=9%  Similarity=-0.007  Sum_probs=93.1

Q ss_pred             CCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC---CcceeeeeeeeecCCcceEEEeecCCC
Q 038823           76 RKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMD---HKHILKLIGCCLETPIPILVFEYGEYT  152 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~---h~niv~l~~~~~~~~~~~lv~e~~~~g  152 (338)
                      ...|+.|....+|+...+++.+++|.....    ....+..|+..|+.|.   ...++++++++...+..++||||+++.
T Consensus        41 ~~~l~gG~~n~~y~v~~~~~~~vlK~~~~~----~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G~  116 (312)
T 3jr1_A           41 KEKLYSGEMNEIWLINDEVQTVFVKINERS----YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNKS  116 (312)
T ss_dssp             EEEECCSSSSEEEEEESSSCEEEEEEEEGG----GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCCC
T ss_pred             eEEeCCccceeeeEEEECCCeEEEEeCCcc----cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccCC
Confidence            456899999999999887788889887543    2466888999988884   356888999888778899999999987


Q ss_pred             CHHH-----------hhhcCCC-CCC----------------CCCCHHHHH---HHH----------------HHHHHHH
Q 038823          153 TLRD-----------RIFGAPQ-PHF----------------EPLLLKHRL---KVA----------------MGIAHAL  185 (338)
Q Consensus       153 sL~~-----------~l~~~~~-~~~----------------~~l~~~~~~---~i~----------------~~i~~~l  185 (338)
                      .+..           .+..... ..+                ..-+|....   ++.                ..++..+
T Consensus       117 ~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~~~l  196 (312)
T 3jr1_A          117 KNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQIV  196 (312)
T ss_dssp             CCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            6421           1122111 000                012454322   111                1122222


Q ss_pred             -HHhh-cCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          186 -AYLH-VGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       186 -~~LH-~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                       ..|. ......++|+|+.+.|++++.++ +.|.|+.
T Consensus       197 ~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~  232 (312)
T 3jr1_A          197 ADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA  232 (312)
T ss_dssp             HHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred             HHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence             2332 12356899999999999999887 8999984

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=97.96  E-value=8.5e-05  Score=68.62  Aligned_cols=80  Identities=11%  Similarity=0.034  Sum_probs=50.7

Q ss_pred             CCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCC---CCccchHHHHHHHHHH
Q 038823          193 PRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGV---FNEKLDVYTFSTVLLE  269 (338)
Q Consensus       193 ~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~s~Gv~l~e  269 (338)
                      ...++|+|++|.||+++.++ +.++||+.+........... ....-...|.+|+......   .....++.+....+|+
T Consensus       231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p~~Dla~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (420)
T 2pyw_A          231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPMGFDIGA-YLGNLILAFFAQDGHATQENDRKEYKQWILRTIEQTWN  308 (420)
T ss_dssp             CCEEECSCCSGGGEEECSSC-EEECCCTTCEEECHHHHHHH-HHHHHHHHHHHGGGGCCSSCCSHHHHHHHHHHHHHHHH
T ss_pred             CCeEEecCCCCCcEEEeCCC-CEEEeCcccccCchHHHHHH-HHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHH
Confidence            78899999999999998776 99999998876543211100 0000123466666553211   1223555678888888


Q ss_pred             HHhCC
Q 038823          270 LLTGQ  274 (338)
Q Consensus       270 l~tG~  274 (338)
                      .+++.
T Consensus       309 ~y~~~  313 (420)
T 2pyw_A          309 LFNKR  313 (420)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87764

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=97.67  E-value=0.00028  Score=61.56  Aligned_cols=77  Identities=8%  Similarity=-0.013  Sum_probs=53.9

Q ss_pred             CCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCC---cceeeeeeeeecCCcceEEEee
Q 038823           73 YDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDH---KHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        73 ~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h---~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      ......+|.|..+.||+... +|+.+.+|+..... ......+..|+..|+.|.-   --+++++++.    ..++||||
T Consensus        17 v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~-~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~----~~~lv~e~   91 (288)
T 3f7w_A           17 VAAVAERGHSHRWHLYRVELADGTPLFVKALPDDA-PALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEW   91 (288)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTC-CCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEEC
T ss_pred             eEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCC-cchhhHHHHHHHHHHHHHhhCCCCcceEEecc----CceEEEEe
Confidence            34456789999999999999 78899999875442 2222457789988888842   2345555542    34799999


Q ss_pred             cCCCCH
Q 038823          149 GEYTTL  154 (338)
Q Consensus       149 ~~~gsL  154 (338)
                      ++++..
T Consensus        92 l~~~~~   97 (288)
T 3f7w_A           92 VDERPP   97 (288)
T ss_dssp             CCCCCC
T ss_pred             ecccCC
Confidence            887653

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=97.64  E-value=0.0013  Score=58.05  Aligned_cols=162  Identities=15%  Similarity=0.092  Sum_probs=88.4

Q ss_pred             cCHHHHHHhhcCCCcC-----CccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcc--eeeee
Q 038823           61 FSAKELEIATNNYDER-----KFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKH--ILKLI  133 (338)
Q Consensus        61 ~~~~~~~~~~~~~~~~-----~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~l~  133 (338)
                      ++.+++...-..|...     +.|+.|....+|+...++..+++|........   ..+..|+.++..+...+  +.+++
T Consensus         7 ~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g~~vlk~~~~~~~~---~~l~~e~~~l~~L~~~g~~vP~~~   83 (322)
T 2ppq_A            7 ITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKDPLILTLYEKRVEK---NDLPFFLGLMQHLAAKGLSCPLPL   83 (322)
T ss_dssp             CCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSCCEEEEEECC---C---CHHHHHHHHHHHHHHTTCCCCCBC
T ss_pred             CCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCccEEEEEeCCCCCH---HHHHHHHHHHHHHHHCCCCCCccc
Confidence            4566666665566542     34667888899999886667889988763222   23456777777664222  33444


Q ss_pred             eee------ecCCcceEEEeecCCCCHHH--------------hhhcC----CCCCCCCC---CHHHHHH----------
Q 038823          134 GCC------LETPIPILVFEYGEYTTLRD--------------RIFGA----PQPHFEPL---LLKHRLK----------  176 (338)
Q Consensus       134 ~~~------~~~~~~~lv~e~~~~gsL~~--------------~l~~~----~~~~~~~l---~~~~~~~----------  176 (338)
                      ...      ...+..+++++|++|..+..              .++..    ........   .|...+.          
T Consensus        84 ~~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  163 (322)
T 2ppq_A           84 PRKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVE  163 (322)
T ss_dssp             CBTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTS
T ss_pred             CCCCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhh
Confidence            221      12345689999999755321              01110    10000001   1222110          


Q ss_pred             --HHHHHHHHHHHhhc----CCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          177 --VAMGIAHALAYLHV----GFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       177 --i~~~i~~~l~~LH~----~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                        +...+...+..+..    .....++|+|+.+.||+++.+..+.|+||+.+...
T Consensus       164 ~~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~g  218 (322)
T 2ppq_A          164 KGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFACND  218 (322)
T ss_dssp             TTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCEEE
T ss_pred             hhhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhccCc
Confidence              00113344455442    12467999999999999988766689999877543

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=97.60  E-value=0.0017  Score=57.44  Aligned_cols=164  Identities=12%  Similarity=0.069  Sum_probs=89.5

Q ss_pred             ccccCHHHHHHhhcCCCc-----CCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcc--e
Q 038823           58 YRIFSAKELEIATNNYDE-----RKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKH--I  129 (338)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~-----~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~n--i  129 (338)
                      ....+.+++...-..|..     ...++ |....||+... +|..+++|.......  ....+..|..++..+....  +
T Consensus         8 ~~~l~~~~i~~~l~~~g~~~~~~~~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~~--~~~~~~~E~~~~~~L~~~g~~v   84 (328)
T 1zyl_A            8 FQTLHPDTIMDALFEHGIRVDSGLTPLN-SYENRVYQFQDEDRRRFVVKFYRPERW--TADQILEEHQFALQLVNDEVPV   84 (328)
T ss_dssp             CCCCCHHHHHHHHHHTTCCCCSCCEEEC-CSSSEEEEECCTTCCCEEEEEECTTTS--CHHHHHHHHHHHHHHHHTTCSB
T ss_pred             CCCCCHHHHHHHHHHcCCCCCceEEeec-CcccceEEEEcCCCCEEEEEEcCCCCC--CHHHHHHHHHHHHHHHHcCCee
Confidence            344555555555444432     23466 77889999877 556799999864321  1245566888777775222  4


Q ss_pred             eeeeee-----eecCCcceEEEeecCCCCHH-----H------h---hh----cCCCCCCCCCCHHHH------------
Q 038823          130 LKLIGC-----CLETPIPILVFEYGEYTTLR-----D------R---IF----GAPQPHFEPLLLKHR------------  174 (338)
Q Consensus       130 v~l~~~-----~~~~~~~~lv~e~~~~gsL~-----~------~---l~----~~~~~~~~~l~~~~~------------  174 (338)
                      ++++..     ....+..+++|++++|..+.     .      .   ++    ..........++...            
T Consensus        85 p~~~~~~g~~~~~~~g~~~~l~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (328)
T 1zyl_A           85 AAPVAFNGQTLLNHQGFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDAT  164 (328)
T ss_dssp             CCCCCBTTBSCEEETTEEEEEEECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCS
T ss_pred             cceeecCCcEEEEECCEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcC
Confidence            445543     11234557899999974432     0      0   11    111000011222211            


Q ss_pred             ----------HHHHHHHHHHHHHhhc-CCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          175 ----------LKVAMGIAHALAYLHV-GFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       175 ----------~~i~~~i~~~l~~LH~-~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                                ...+..++..+.-+-. .....++|+|+.+.||+++ + .+.|+||+.+....
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~g~  225 (328)
T 1zyl_A          165 LIPSGLKAAFLKATDELIAAVTAHWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARNGP  225 (328)
T ss_dssp             SSCTTTHHHHHHHHHHHHHHHHHHCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCEEC
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCcCc
Confidence                      1111222222222211 1256789999999999998 4 89999998876543

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=97.58  E-value=0.00031  Score=62.58  Aligned_cols=145  Identities=11%  Similarity=0.036  Sum_probs=75.7

Q ss_pred             CccccCCCce-EEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCC--cceeeeeeeeecCCcceEEEeecCCC
Q 038823           77 KFIKQDSTYK-LYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDH--KHILKLIGCCLETPIPILVFEYGEYT  152 (338)
Q Consensus        77 ~~lg~G~~g~-Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h--~niv~l~~~~~~~~~~~lv~e~~~~g  152 (338)
                      ..|+.|.... +|+... +++.+++|.......    ..+..|+.++..+..  -.+.+++.+..+.  -+++||++.+.
T Consensus        24 ~~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~~----~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~--g~ll~e~l~~~   97 (333)
T 3csv_A           24 TPLAGDASSRRYQRLRSPTGAKAVLMDWSPEEG----GDTQPFVDLAQYLRNLDISAPEIYAEEHAR--GLLLIEDLGDA   97 (333)
T ss_dssp             CC--------CCEEEECTTCCEEEEEECCTTTT----CCSHHHHHHHHHHHHTTCBCCCEEEEETTT--TEEEECCCCSC
T ss_pred             eECCCCCCCceEEEEEcCCCCeEEEEECCCCCC----ccccHHHHHHHHHHhCCCCCCceeeecCCC--CEEEEeeCCCc
Confidence            4465554444 677766 377777776543311    123456666666642  2356677664433  37899999877


Q ss_pred             CHHHhhhcCC---------------------CCCCCCCCHHHHH-------H-------------HHHHHHHHHHHhh--
Q 038823          153 TLRDRIFGAP---------------------QPHFEPLLLKHRL-------K-------------VAMGIAHALAYLH--  189 (338)
Q Consensus       153 sL~~~l~~~~---------------------~~~~~~l~~~~~~-------~-------------i~~~i~~~l~~LH--  189 (338)
                      .+.+.+....                     ......++.....       .             ....+...+..+.  
T Consensus        98 ~l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~  177 (333)
T 3csv_A           98 LFTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQILSA  177 (333)
T ss_dssp             BHHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             chHHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence            7654443211                     0011112221110       0             0011111222221  


Q ss_pred             -cCCCCCeeecCCCCCceeeCCC----CceEEecCCCCcccCC
Q 038823          190 -VGFPRPIVFGNLISLCILFNEE----NVAKLFDFSESISIPE  227 (338)
Q Consensus       190 -~~~~~~iiH~dik~~Nill~~~----~~~kl~Dfg~a~~~~~  227 (338)
                       ......++|+|+.+.||+++.+    +.+.|+||+.+...+.
T Consensus       178 ~~~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G~~  220 (333)
T 3csv_A          178 QLEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLGHR  220 (333)
T ss_dssp             HCCSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEECT
T ss_pred             cccCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcCCC
Confidence             1125689999999999999875    6799999998876544

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=97.55  E-value=0.00038  Score=61.08  Aligned_cols=142  Identities=10%  Similarity=-0.004  Sum_probs=76.6

Q ss_pred             CCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcce-eeeeeeeecCCcceEEEeec-CCCC
Q 038823           76 RKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHI-LKLIGCCLETPIPILVFEYG-EYTT  153 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~-~~gs  153 (338)
                      .+.|+.|....+|+.    ..+++|+........  ....+|+.+++.+...++ .++++++  .+.-++++||+ +|.+
T Consensus        23 i~~l~gG~tN~~~~~----~~~vlR~~~~~~~~~--~~r~~E~~~l~~l~~~g~~P~~~~~~--~~~~~~v~e~i~~g~~   94 (301)
T 3dxq_A           23 PLERLGGLTNLVFRA----GDLCLRIPGKGTEEY--INRANEAVAAREAAKAGVSPEVLHVD--PATGVMVTRYIAGAQT   94 (301)
T ss_dssp             CEEEESCSSEEEEEE----TTEEEEEECC----C--CCHHHHHHHHHHHHHTTSSCCEEEEC--TTTCCEEEECCTTCEE
T ss_pred             eeEcCCcccccccee----eeEEEECCCCCccce--eCHHHHHHHHHHHHHcCCCCceEEEE--CCCCEEEEeecCCCcc
Confidence            567888999999998    568888876542111  112457777777653222 4666554  33357899999 6544


Q ss_pred             HHH------------------hhhcCCCCCCCCCCH-HHHHHHHHH--------------HHHHH----HHhh-cCCCCC
Q 038823          154 LRD------------------RIFGAPQPHFEPLLL-KHRLKVAMG--------------IAHAL----AYLH-VGFPRP  195 (338)
Q Consensus       154 L~~------------------~l~~~~~~~~~~l~~-~~~~~i~~~--------------i~~~l----~~LH-~~~~~~  195 (338)
                      |..                  .++.........++. .....+...              +...+    ..|. ......
T Consensus        95 l~~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~  174 (301)
T 3dxq_A           95 MSPEKFKTRPGSPARAGEAFRKLHGSGAVFPFRFELFAMIDDYLKVLSTKNVTLPAGYHDVVREAGGVRSALAAHPLPLA  174 (301)
T ss_dssp             CCHHHHHHSTTHHHHHHHHHHHHHTSCCCCSSBCCHHHHHHHHHHHHC--CCCCCTTHHHHHHHHHHHHHHHHSSCCCCE
T ss_pred             CCHhhHhhhHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhcCCCce
Confidence            421                  011111100001111 111111100              11111    1111 112456


Q ss_pred             eeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          196 IVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       196 iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ++|+|+.+.||+ ..++.+.++||..+....
T Consensus       175 l~HgDl~~~Nil-~~~~~~~lID~e~a~~g~  204 (301)
T 3dxq_A          175 ACHCDPLCENFL-DTGERMWIVDWEYSGMND  204 (301)
T ss_dssp             EECSCCCGGGEE-ECSSCEEECCCTTCEEEC
T ss_pred             eeccCCCcCCEE-ECCCCEEEEecccccCCC
Confidence            899999999999 566778999999876544

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=97.43  E-value=0.00025  Score=65.68  Aligned_cols=72  Identities=17%  Similarity=0.087  Sum_probs=49.2

Q ss_pred             CCccccCCCceEEEEEEC---------CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcce-eeeeeeeecCCcceEE
Q 038823           76 RKFIKQDSTYKLYKGFWQ---------ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHI-LKLIGCCLETPIPILV  145 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~~---------~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~l~~~~~~~~~~~lv  145 (338)
                      .+.|+.|....+|+....         +..+.+|+......   ...+.+|..+++.+...++ +++++.+.+    .+|
T Consensus        78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~~---~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~v  150 (429)
T 1nw1_A           78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPET---ESHLVAESVIFTLLSERHLGPKLYGIFSG----GRL  150 (429)
T ss_dssp             EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCCC---HHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEE
T ss_pred             EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCCCc---HHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CEE
Confidence            356788888999999873         46788888843211   1345579988888863333 667776543    389


Q ss_pred             EeecCCCCH
Q 038823          146 FEYGEYTTL  154 (338)
Q Consensus       146 ~e~~~~gsL  154 (338)
                      +||++|.+|
T Consensus       151 ~e~l~G~~l  159 (429)
T 1nw1_A          151 EEYIPSRPL  159 (429)
T ss_dssp             ECCCCEEEC
T ss_pred             EEEeCCccc
Confidence            999986443

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=97.34  E-value=0.00066  Score=63.31  Aligned_cols=72  Identities=14%  Similarity=-0.023  Sum_probs=47.1

Q ss_pred             CccccCCCceEEEEEECC--eEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcce-eeeeeeeecCCcceEEEeecCCCC
Q 038823           77 KFIKQDSTYKLYKGFWQE--RLISVMKYNESYSDSACKFSINNIVYAAQMDHKHI-LKLIGCCLETPIPILVFEYGEYTT  153 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~~~--~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~~~gs  153 (338)
                      +.|+.|-...+|+....+  ..+++|+....... . -...+|..++..|...++ +++++++..    .+|+||++|.+
T Consensus       114 ~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~-~-idR~~E~~vl~~L~~~gl~P~ll~~~~~----G~v~e~I~G~~  187 (458)
T 2qg7_A          114 QIINGGITNILIKVKDMSKQAKYLIRLYGPKTDE-I-INREREKKISCILYNKNIAKKIYVFFTN----GRIEEFMDGYA  187 (458)
T ss_dssp             EEECC--CEEEEEEEETTTTEEEEEEEECC-CCS-C-SCHHHHHHHHHHHTTSSSBCCEEEEETT----EEEEECCCSEE
T ss_pred             EEcCCCeEeEEEEEEECCCCceEEEEECCCChhh-h-cCHHHHHHHHHHHHhcCCCCCEEEEeCC----eEEEEeeCCcc
Confidence            457788889999999854  88889987543211 1 112578888888875444 567777632    36999998744


Q ss_pred             H
Q 038823          154 L  154 (338)
Q Consensus       154 L  154 (338)
                      |
T Consensus       188 l  188 (458)
T 2qg7_A          188 L  188 (458)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=97.33  E-value=0.00087  Score=60.87  Aligned_cols=142  Identities=15%  Similarity=0.096  Sum_probs=83.1

Q ss_pred             CccccCCCceEEEEEEC---------CeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-CcceeeeeeeeecCCcceEEE
Q 038823           77 KFIKQDSTYKLYKGFWQ---------ERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~~---------~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~  146 (338)
                      +.|..|-...+|+....         +..+.+++.....  .......+|..+++.+. +.-..++++++.+    .+||
T Consensus        56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~--~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v~  129 (379)
T 3feg_A           56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAIL--QGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRLE  129 (379)
T ss_dssp             EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC-----CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEEE
T ss_pred             EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCcc--chHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccEE
Confidence            46777888899998872         3678888864321  22355668999998885 3334667776654    2999


Q ss_pred             eecCCCCHHHh-----------------hhcCCCCCCCCCC--HHHHHHHHHHHHH-------------------HHHHh
Q 038823          147 EYGEYTTLRDR-----------------IFGAPQPHFEPLL--LKHRLKVAMGIAH-------------------ALAYL  188 (338)
Q Consensus       147 e~~~~gsL~~~-----------------l~~~~~~~~~~l~--~~~~~~i~~~i~~-------------------~l~~L  188 (338)
                      ||++|.+|..-                 +............  +.++.++..++..                   .+..|
T Consensus       130 e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L  209 (379)
T 3feg_A          130 QYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNL  209 (379)
T ss_dssp             ECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHH
T ss_pred             EEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHH
Confidence            99997554311                 1111110011222  4555555544422                   12222


Q ss_pred             ----hc-CCCCCeeecCCCCCceeeCCC----CceEEecCCCCcc
Q 038823          189 ----HV-GFPRPIVFGNLISLCILFNEE----NVAKLFDFSESIS  224 (338)
Q Consensus       189 ----H~-~~~~~iiH~dik~~Nill~~~----~~~kl~Dfg~a~~  224 (338)
                          .. .....++|+|+.+.||+++.+    +.+.++||..+..
T Consensus       210 ~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~  254 (379)
T 3feg_A          210 RKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY  254 (379)
T ss_dssp             HHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred             HHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence                21 134679999999999999876    6899999987654

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=97.10  E-value=0.00075  Score=61.02  Aligned_cols=72  Identities=17%  Similarity=0.065  Sum_probs=43.3

Q ss_pred             CccccCCCceEEEEEECC----------eEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcc-eeeeeeeeecCCcceEE
Q 038823           77 KFIKQDSTYKLYKGFWQE----------RLISVMKYNESYSDSACKFSINNIVYAAQMDHKH-ILKLIGCCLETPIPILV  145 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~~~----------~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~n-iv~l~~~~~~~~~~~lv  145 (338)
                      ..++.|....+|+....+          ..+++|+..... . .......|..+++.+...+ .+++++..  .  -++|
T Consensus        39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~-~-~~~~~~~E~~~l~~L~~~g~~P~~~~~~--~--~~~v  112 (369)
T 3c5i_A           39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHV-D-ELYNTISEFEVYKTMSKYKIAPQLLNTF--N--GGRI  112 (369)
T ss_dssp             EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTG-G-GTSCHHHHHHHHHHHHHTTSSCCEEEEE--T--TEEE
T ss_pred             EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCc-c-ceecHHHHHHHHHHHHhcCCCCceEEec--C--CcEE
Confidence            457788888999998743          678888865431 1 1112356788888775333 44666554  1  3789


Q ss_pred             EeecCCCCH
Q 038823          146 FEYGEYTTL  154 (338)
Q Consensus       146 ~e~~~~gsL  154 (338)
                      |||++|..+
T Consensus       113 ~e~i~G~~l  121 (369)
T 3c5i_A          113 EEWLYGDPL  121 (369)
T ss_dssp             EECCCSEEC
T ss_pred             EEEecCCcC
Confidence            999997543

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=97.03  E-value=0.0034  Score=56.09  Aligned_cols=34  Identities=15%  Similarity=0.291  Sum_probs=29.4

Q ss_pred             CCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          193 PRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       193 ~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ...++|+|+.+.||+++.++.+.|+||+.+....
T Consensus       205 ~~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~~~  238 (339)
T 3i1a_A          205 KYVLCHSDIHAGNVLVGNEESIYIIDWDEPMLAP  238 (339)
T ss_dssp             GCEEECSCCCGGGEEECGGGCEEECCCSSCEEEC
T ss_pred             CceeEeCCCCcCCEEEeCCCeEEEEECCCCeeCC
Confidence            4679999999999999988889999998776544

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=96.65  E-value=0.0058  Score=50.45  Aligned_cols=103  Identities=12%  Similarity=-0.033  Sum_probs=68.7

Q ss_pred             CCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCce
Q 038823          152 TTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH  231 (338)
Q Consensus       152 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~  231 (338)
                      -||.++|...+.    +++++++|.++.|.+.+|.-+-.  ...-..+=+.|..|++..+|.+...+ +.+.        
T Consensus        33 vSL~eIL~~~~~----PlsEEqaWALc~Qc~~~L~~~~~--~~~~~~~i~~~~~i~l~~dG~V~f~~-~~s~--------   97 (229)
T 2yle_A           33 LSLEEILRLYNQ----PINEEQAWAVCYQCCGSLRAAAR--RRQPRHRVRSAAQIRVWRDGAVTLAP-AADD--------   97 (229)
T ss_dssp             EEHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCSGGGEEEETTSCEEECC-C-----------
T ss_pred             ccHHHHHHHcCC----CcCHHHHHHHHHHHHHHHHhhhh--cccCCceecCCcceEEecCCceeccc-cccc--------
Confidence            579999988775    89999999999999999987621  11111333467999999999998764 1110        


Q ss_pred             eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCC
Q 038823          232 IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQST  276 (338)
Q Consensus       232 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p  276 (338)
                            .....+.|||... ...+.+.=|||+|+++|.-+-=..|
T Consensus        98 ------~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~  135 (229)
T 2yle_A           98 ------AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLK  135 (229)
T ss_dssp             ---------------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             ------ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCC
Confidence                  0122466888763 3457888999999999998874444

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=95.95  E-value=0.012  Score=54.14  Aligned_cols=141  Identities=16%  Similarity=0.079  Sum_probs=83.0

Q ss_pred             CccccCCCceEEEEEEC---------CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcc-eeeeeeeeecCCcceEEE
Q 038823           77 KFIKQDSTYKLYKGFWQ---------ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKH-ILKLIGCCLETPIPILVF  146 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~~---------~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~n-iv~l~~~~~~~~~~~lv~  146 (338)
                      +.+..|-...+|+....         +..+++++..... ... -...+|..+++.+.-.+ ..++++.+.    -++|+
T Consensus        76 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t-~~~-idR~~E~~~l~~L~~~gi~P~l~~~~~----~~~I~  149 (424)
T 3mes_A           76 KQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHV-GKF-YDSKVELDVFRYLSNINIAPNIIADFP----EGRIE  149 (424)
T ss_dssp             EEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC--CC-CCHHHHHHHHHHHHHTTSSCCEEEEET----TEEEE
T ss_pred             EEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCc-chh-cCHHHHHHHHHHHHhcCCCCCEEEEcC----CCEEE
Confidence            45777888899999884         5788888875432 111 12356788887775222 455665432    37899


Q ss_pred             eecCCCCHHH--h------------h---hc----C---CCC-CCCCCCHHHHHHHHHHHH-------------------
Q 038823          147 EYGEYTTLRD--R------------I---FG----A---PQP-HFEPLLLKHRLKVAMGIA-------------------  182 (338)
Q Consensus       147 e~~~~gsL~~--~------------l---~~----~---~~~-~~~~l~~~~~~~i~~~i~-------------------  182 (338)
                      ||++|..|..  +            +   +.    .   ... ...+-.+.++.++..++-                   
T Consensus       150 efI~G~~l~~~~l~~~~~~~~ia~~La~LH~~~~~~~~L~~~~~~~p~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~  229 (424)
T 3mes_A          150 EFIDGEPLTTKQLQLTHICVEVAKNMGSLHIINSKRADFPSRFDKEPILFKRIYLWREEAKIQVSKNNFQIDKELYSKIL  229 (424)
T ss_dssp             ECCCSEECCTGGGGSHHHHHHHHHHHHHHHTHHHHCTTSCTTSCCSCCHHHHHHHHHHHHHHHHHTCC--CCHHHHHHHH
T ss_pred             EEeCCccCChhhcCCHHHHHHHHHHHHHHhcCchhhccCccccCCCCcHHHHHHHHHHHHHHhhcccchhhccccHHHHH
Confidence            9999865321  0            0   00    0   000 001122444444433221                   


Q ss_pred             HHHHHhh---------------------cCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          183 HALAYLH---------------------VGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       183 ~~l~~LH---------------------~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ..+.+|.                     ......++|+|+.+.||+ +.++.+.++||..+..
T Consensus       230 ~e~~~L~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~H~D~~~~N~l-~~~~~~~~IDwe~a~~  291 (424)
T 3mes_A          230 EEIDQLEELIMGGEKFSMERALELKLYSPAFSLVFAHNDLQENNLL-QTQNNIRMIDYEYSAI  291 (424)
T ss_dssp             HHHHHHHHHHHTSSCCCHHHHHHHHTTCGGGCEEEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred             HHHHHHHHHHhhhcccccccccccccccCCCCceEECCCCCcccee-cCCCcEEEEecccCCc
Confidence            2223322                     112457899999999999 7788999999987754

>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}

Probab=92.95  E-value=0.36  Score=39.64  Aligned_cols=117  Identities=5%  Similarity=-0.055  Sum_probs=78.1

Q ss_pred             CCcceeeeeeeeecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCC
Q 038823          125 DHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISL  204 (338)
Q Consensus       125 ~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~  204 (338)
                      .||++++. ..-.+.+.+.+.++.-+  +..++-.-      ..++...+++++.+|+....+++     .=+|--+.|+
T Consensus        43 ~~~~Fl~~-~I~e~eD~v~~~y~~~~--~~~~f~~i------k~~~~~eKlr~l~ni~~l~~~~~-----~r~tf~L~P~  108 (215)
T 4ann_A           43 HSPYFIDA-ELTELRDSFQIHYDIND--NHTPFDNI------KSFTKNEKLRYLLNIKNLEEVNR-----TRYTFVLAPD  108 (215)
T ss_dssp             CCTTBCCE-EEEECSSEEEEEECCCT--TSEEGGGG------GGSCHHHHHHHHHHGGGGGGGGG-----SSEECCCSGG
T ss_pred             cCCcccce-EEEEcccEEEEEEEcCc--ccCCHHHH------HhcCHHHHHHHHHHHHHHHHHhc-----CceEEEEecc
Confidence            58888866 44455555555554433  22222211      25788999999999999887666     3367789999


Q ss_pred             ceeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          205 CILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       205 Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ||+++.++.+++.-.|+...+++                   .     ..+...=.-.+=+++..+++++..|+.
T Consensus       109 NL~f~~~~~p~i~~RGik~~l~P-------------------~-----~~~ee~fL~qyKAliiall~~K~~Fe~  159 (215)
T 4ann_A          109 ELFFTRDGLPIAKTRGLQNVVDP-------------------L-----PVSEAEFLTRYKALVICAFNEKQSFDA  159 (215)
T ss_dssp             GEEECTTSCEEESCCEETTTBSC-------------------C-----CCCHHHHHHHHHHHHHHHHCTTCCHHH
T ss_pred             eEEEcCCCCEEEEEccCccCCCC-------------------C-----CCCHHHHHHHHHHHHHHHHcCCCCHHH
Confidence            99999999999987775433322                   1     122222344667888889999888864

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=89.84  E-value=0.04  Score=51.28  Aligned_cols=60  Identities=5%  Similarity=-0.126  Sum_probs=17.5

Q ss_pred             cCCccccCCCceEEEEEEC--CeEEEE------EEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeee
Q 038823           75 ERKFIKQDSTYKLYKGFWQ--ERLISV------MKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCL  137 (338)
Q Consensus        75 ~~~~lg~G~~g~Vy~~~~~--~~~vai------k~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~  137 (338)
                      ..+.||   ||.||+|.+.  ..+||+      |...... .......+.+|..++..++|+|+++.+++..
T Consensus       146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~  214 (463)
T 3cxl_A          146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKV  214 (463)
T ss_dssp             STTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEE
T ss_pred             ccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEE
Confidence            345666   9999999993  357888      7665432 2333456888999999999999999988764

>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}

Probab=89.41  E-value=1.1  Score=36.92  Aligned_cols=115  Identities=12%  Similarity=0.069  Sum_probs=75.5

Q ss_pred             CCcceeeeeeeeecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHH-HhhcCCCCCeeecCCCC
Q 038823          125 DHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALA-YLHVGFPRPIVFGNLIS  203 (338)
Q Consensus       125 ~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~-~LH~~~~~~iiH~dik~  203 (338)
                      .||++  -...-.+.+.+.+.++.-+++-=+..+.        .++...+++++.+|+.... +++     .-+|--+.|
T Consensus        48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~~i~--------~~~~~eKlrll~nl~~L~~~~~~-----~r~tf~l~P  112 (219)
T 4ano_A           48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFAAIR--------KTTLLSRIRAAIHLVSKVKHHSA-----RRLIFIVCP  112 (219)
T ss_dssp             SCSSS--EEEEEECSSEEEEEEECCTTCEEHHHHH--------TSCHHHHHHHHHHHHHHHSSCCS-----SSEECCCCG
T ss_pred             cCCCC--CeEEEEeCCEEEEEEEcCcccCcHHHHH--------hcCHHHHHHHHHHHHHHHHHhhh-----CceeEEEeC
Confidence            57887  2233355666666666543332233332        4788999999999998877 666     446778899


Q ss_pred             CceeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcC
Q 038823          204 LCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRD  278 (338)
Q Consensus       204 ~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~  278 (338)
                      +||+++.++.+++.-.|+-..+++                   .-     .+..-=.-.+=+++..++.++..|+
T Consensus       113 ~NL~f~~~~~p~i~hRGi~~~lpP-------------------~e-----~~ee~fl~qyKali~all~~K~~Fe  163 (219)
T 4ano_A          113 ENLMFNRALEPFFLHVGVKESLPP-------------------DE-----WDDERLLREVKATVLALTEGEYRFD  163 (219)
T ss_dssp             GGEEECTTCCEEESCCEETTTBSS-------------------CS-----CCHHHHHHHHHHHHHHHTTCSSCHH
T ss_pred             ceEEEeCCCcEEEEEcCCcccCCC-------------------CC-----CCHHHHHHHHHHHHHHHHcCCCCHH
Confidence            999999999999988875433322                   11     1222223456677788888887775

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=80.24  E-value=0.93  Score=41.08  Aligned_cols=30  Identities=23%  Similarity=0.192  Sum_probs=24.9

Q ss_pred             CeeecCCCCCceee------CCCCceEEecCCCCcc
Q 038823          195 PIVFGNLISLCILF------NEENVAKLFDFSESIS  224 (338)
Q Consensus       195 ~iiH~dik~~Nill------~~~~~~kl~Dfg~a~~  224 (338)
                      .++|+|+.+.||++      +++..+.++||..|..
T Consensus       245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~  280 (401)
T 3g15_A          245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY  280 (401)
T ss_dssp             EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred             eeEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence            46799999999999      4456799999987754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	338
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	6e-29
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	3e-28
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	4e-26
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	3e-25
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	3e-25
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	4e-24
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	1e-23
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	3e-23
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	3e-23
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	8e-23
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	8e-23
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	2e-22
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	2e-22
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	2e-22
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	2e-22
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	4e-22
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	9e-22
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	1e-21
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	1e-21
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	2e-21
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-21
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	2e-21
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	3e-21
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	8e-21
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	2e-20
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	3e-20
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	5e-20
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	1e-19
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	2e-19
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	4e-19
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	5e-19
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	9e-19
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	1e-18
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	1e-18
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	2e-18
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	3e-18
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	9e-18
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	9e-17
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	3e-16
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	4e-16
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	4e-16
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	7e-16
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	2e-14
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	5e-14
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	1e-13
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	2e-13
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	2e-13
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	4e-13
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	2e-12
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	3e-12
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	2e-11
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	2e-11
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	2e-11
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	5e-11
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	6e-11
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	5e-10
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	1e-09
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	3e-09
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	5e-09
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	8e-09
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	3e-06
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	4e-06

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (279), Expect = 6e-29
 Identities = 31/211 (14%), Positives = 81/211 (38%), Gaps = 13/211 (6%)

Query: 66  LEIATNNYDERKFIKQDSTYKLYKGFWQE--RLISVMKYNESYSDSACKFSINNIVYAAQ 123
           +E+  +++++   +   +   ++K   +    +++    +     +     I  +    +
Sbjct: 1   MELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHE 60

Query: 124 MDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAH 183
            +  +I+   G         +  E+ +  +L   +          +  +   KV++ +  
Sbjct: 61  CNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLK-----KAGRIPEQILGKVSIAVIK 115

Query: 184 ALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTY 243
            L YL       I+  ++    IL N     KL DF  S  + +   +    S  G  +Y
Sbjct: 116 GLTYLR--EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMAN----SFVGTRSY 169

Query: 244 SAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
            +PE  +G  ++ + D+++    L+E+  G+
Sbjct: 170 MSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 200

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 3e-28
 Identities = 53/277 (19%), Positives = 96/277 (34%), Gaps = 27/277 (9%)

Query: 65  ELEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQM 124
           + EI        + I   S   +YKG W   +   M    + +    +   N +    + 
Sbjct: 2   DWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKT 61

Query: 125 DHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHA 184
            H +IL  +G     P   +V ++ E ++L   +            +   + +A   A  
Sbjct: 62  RHVNILLFMGYS-TAPQLAIVTQWCEGSSLYHHLHIIETK----FEMIKLIDIARQTAQG 116

Query: 185 LAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYS 244
           + YLH    + I+  +L S  I  +E+   K+ DF  +                G+  + 
Sbjct: 117 MDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWM 173

Query: 245 APEYKRG---GVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNR 301
           APE  R      ++ + DVY F  VL EL+TGQ     +     +  ++           
Sbjct: 174 APEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMV--------GRG 225

Query: 302 FTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP 338
           +       +  +          +A  RL  ECL +  
Sbjct: 226 YLSPDLSKVRSNCP--------KAMKRLMAECLKKKR 254

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 4e-26
 Identities = 40/208 (19%), Positives = 84/208 (40%), Gaps = 15/208 (7%)

Query: 67  EIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDH 126
            +        + I +     +  G ++   ++V       +D+  +  +       Q+ H
Sbjct: 3   ALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIK---NDATAQAFLAEASVMTQLRH 59

Query: 127 KHILKLIGCCLETPIPI-LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHAL 185
            ++++L+G  +E    + +V EY    +L D +    +           LK ++ +  A+
Sbjct: 60  SNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGG---DCLLKFSLDVCEAM 116

Query: 186 AYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSA 245
            YL        V  +L +  +L +E+NVAK+ DF  +      +             ++A
Sbjct: 117 EYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDT-----GKLPVKWTA 168

Query: 246 PEYKRGGVFNEKLDVYTFSTVLLELLTG 273
           PE  R   F+ K DV++F  +L E+ + 
Sbjct: 169 PEALREKKFSTKSDVWSFGILLWEIYSF 196

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  101 bits (252), Expect = 3e-25
 Identities = 50/254 (19%), Positives = 89/254 (35%), Gaps = 29/254 (11%)

Query: 64  KELEIATNNYDERKFIKQDSTYKLYKGFWQE-------RLISVMKYNESYSDSACKFSIN 116
             LE   NN +  + I + +  ++++             +++V    E  S         
Sbjct: 6   LSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQR 65

Query: 117 NIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFG---------------- 160
                A+ D+ +I+KL+G C       L+FEY  Y  L + +                  
Sbjct: 66  EAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLST 125

Query: 161 ---APQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLF 217
                 P   PL    +L +A  +A  +AYL     R  V  +L +   L  E  V K+ 
Sbjct: 126 RARVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHRDLATRNCLVGENMVVKIA 182

Query: 218 DFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTR 277
           DF  S +I   + +    +      +  PE      +  + DV+ +  VL E+ +     
Sbjct: 183 DFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQP 242

Query: 278 DLLRTHGSVRHLIE 291
                H  V + + 
Sbjct: 243 YYGMAHEEVIYYVR 256

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 3e-25
 Identities = 48/227 (21%), Positives = 93/227 (40%), Gaps = 9/227 (3%)

Query: 65  ELEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQM 124
           E E+        + +      +++ G++       +K  +  S S   F +       Q+
Sbjct: 7   EWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAF-LAEANLMKQL 65

Query: 125 DHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHA 184
            H+ +++L     + PI  ++ EY E  +L D +     P    L +   L +A  IA  
Sbjct: 66  QHQRLVRLYAVVTQEPI-YIITEYMENGSLVDFLK---TPSGIKLTINKLLDMAAQIAEG 121

Query: 185 LAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYS 244
           +A++     R  +  +L +  IL ++    K+ DF  +  I + E      ++     ++
Sbjct: 122 MAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAK-FPIKWT 177

Query: 245 APEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIE 291
           APE    G F  K DV++F  +L E++T         T+  V   +E
Sbjct: 178 APEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLE 224

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 97.9 bits (243), Expect = 4e-24
 Identities = 39/229 (17%), Positives = 85/229 (37%), Gaps = 24/229 (10%)

Query: 61  FSAKELEIATNNYDERKFIKQDSTYKL---------YKGFW-----QERLISVMKYNESY 106
           F+ ++   A   + +   I      ++           G       +E  +++      Y
Sbjct: 7   FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY 66

Query: 107 SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHF 166
           ++   +  ++      Q DH +++ L G   ++   +++ E+ E  +L   +        
Sbjct: 67  TEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFT 126

Query: 167 EPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP 226
                   + +  GIA  + YL        V  +L +  IL N   V K+ DF  S  + 
Sbjct: 127 V----IQLVGMLRGIAAGMKYLA---DMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLE 179

Query: 227 EGETHIITRSRFGAWT---YSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
           +  +     S  G      ++APE  +   F    DV+++  V+ E+++
Sbjct: 180 DDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMS 228

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.3 bits (239), Expect = 1e-23
 Identities = 38/215 (17%), Positives = 89/215 (41%), Gaps = 14/215 (6%)

Query: 64  KELEIATNNYDERKF-IKQDSTYKLYKGFWQER----LISVMKYNESYSDSACKFSINNI 118
           K+L +  +N       +   +   + +G ++ R     +++    +    +  +  +   
Sbjct: 1   KKLFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREA 60

Query: 119 VYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVA 178
               Q+D+ +I++LIG C +    +LV E      L   + G      E + + +  ++ 
Sbjct: 61  QIMHQLDNPYIVRLIGVC-QAEALMLVMEMAGGGPLHKFLVG----KREEIPVSNVAELL 115

Query: 179 MGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRF 238
             ++  + YL     +  V  +L +  +L    + AK+ DF  S ++   +++   RS  
Sbjct: 116 HQVSMGMKYLE---EKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAG 172

Query: 239 -GAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT 272
                + APE      F+ + DV+++   + E L+
Sbjct: 173 KWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALS 207

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.0 bits (236), Expect = 3e-23
 Identities = 33/208 (15%), Positives = 73/208 (35%), Gaps = 16/208 (7%)

Query: 71  NNYDERKFIKQDSTYKLYKGFW----QERLISVMKYNESYSDSACKFSINNIVYAAQMDH 126
            +++  + + +     +Y            + V+   +             +   + + H
Sbjct: 6   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 65

Query: 127 KHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALA 186
            +IL+L G   +     L+ EY    T+   +             +        +A+AL+
Sbjct: 66  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQ-----KLSKFDEQRTATYITELANALS 120

Query: 187 YLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAP 246
           Y H    + ++  ++    +L       K+ DF  S+  P      +     G   Y  P
Sbjct: 121 YCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLC----GTLDYLPP 173

Query: 247 EYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
           E   G + +EK+D+++   +  E L G+
Sbjct: 174 EMIEGRMHDEKVDLWSLGVLCYEFLVGK 201

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.8 bits (235), Expect = 3e-23
 Identities = 37/202 (18%), Positives = 78/202 (38%), Gaps = 9/202 (4%)

Query: 71  NNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHIL 130
            +    K +       +  G W+ +    +K  +  S S  +F I        + H+ ++
Sbjct: 4   KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEF-IEEAKVMMNLSHEKLV 62

Query: 131 KLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHV 190
           +L G C +     ++ EY     L + +             +  L++   +  A+ YL  
Sbjct: 63  QLYGVCTKQRPIFIITEYMANGCLLNYLR----EMRHRFQTQQLLEMCKDVCEAMEYLE- 117

Query: 191 GFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKR 250
              +  +  +L +   L N++ V K+ DF  S  + + E      S+     +S PE   
Sbjct: 118 --SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSK-FPVRWSPPEVLM 174

Query: 251 GGVFNEKLDVYTFSTVLLELLT 272
              F+ K D++ F  ++ E+ +
Sbjct: 175 YSKFSSKSDIWAFGVLMWEIYS 196

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.6 bits (232), Expect = 8e-23
 Identities = 41/221 (18%), Positives = 85/221 (38%), Gaps = 9/221 (4%)

Query: 71  NNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHIL 130
           +     + I       ++ G+W  +    +K     + S   F I       ++ H  ++
Sbjct: 5   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDF-IEEAEVMMKLSHPKLV 63

Query: 131 KLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHV 190
           +L G CLE     LVFE+ E+  L D +             +  L + + +   +AYL  
Sbjct: 64  QLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAA----ETLLGMCLDVCEGMAYLE- 118

Query: 191 GFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKR 250
                ++  +L +   L  E  V K+ DF  +  + + +    +        +++PE   
Sbjct: 119 --EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYT-SSTGTKFPVKWASPEVFS 175

Query: 251 GGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIE 291
              ++ K DV++F  ++ E+ +        R++  V   I 
Sbjct: 176 FSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDIS 216

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.9 bits (233), Expect = 8e-23
 Identities = 33/207 (15%), Positives = 67/207 (32%), Gaps = 12/207 (5%)

Query: 72  NYDERKFIKQDSTYKLYKGFW----QERLISVMKYNESYSDSACKFSINNIVYAAQMDHK 127
           ++   K + + S   +         +E  I +++      ++   +        +++DH 
Sbjct: 9   DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 68

Query: 128 HILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAY 187
             +KL     +         Y +   L   I                      I  AL Y
Sbjct: 69  FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIR-----KIGSFDETCTRFYTAEIVSALEY 123

Query: 188 LHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPE 247
           LH    + I+  +L    IL NE+   ++ DF  +  +          S  G   Y +PE
Sbjct: 124 LH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPE 180

Query: 248 YKRGGVFNEKLDVYTFSTVLLELLTGQ 274
                   +  D++    ++ +L+ G 
Sbjct: 181 LLTEKSACKSSDLWALGCIIYQLVAGL 207

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.3 bits (231), Expect = 2e-22
 Identities = 40/193 (20%), Positives = 82/193 (42%), Gaps = 15/193 (7%)

Query: 86  KLYKGFWQE----RLISVMKYNESYSDSACKFSINN-IVYAAQMDHKHILKLIGCCLETP 140
            + KG++Q     + ++V       +D A K  +        Q+D+ +I+++IG C E  
Sbjct: 22  TVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAE 80

Query: 141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGN 200
             +LV E  E   L   +          +  K+ +++   ++  + YL        V  +
Sbjct: 81  SWMLVMEMAELGPLNKYLQ-----QNRHVKDKNIIELVHQVSMGMKYLE---ESNFVHRD 132

Query: 201 LISLCILFNEENVAKLFDFSESISIPEGETHIITRSRF-GAWTYSAPEYKRGGVFNEKLD 259
           L +  +L   ++ AK+ DF  S ++   E +   ++       + APE      F+ K D
Sbjct: 133 LAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSD 192

Query: 260 VYTFSTVLLELLT 272
           V++F  ++ E  +
Sbjct: 193 VWSFGVLMWEAFS 205

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.4 bits (231), Expect = 2e-22
 Identities = 46/273 (16%), Positives = 90/273 (32%), Gaps = 31/273 (11%)

Query: 86  KLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI-- 143
           ++++G W+   ++V  ++     S   F    I     + H++IL  I    +       
Sbjct: 18  EVWRGKWRGEEVAVKIFSSREERS--WFREAEIYQTVMLRHENILGFIAADNKDNGTWTQ 75

Query: 144 --LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGF-----PRPI 196
             LV +Y E+ +L D +      +   + ++  +K+A+  A  LA+LH+          I
Sbjct: 76  LWLVSDYHEHGSLFDYL------NRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAI 129

Query: 197 VFGNLISLCILFNEENVAKLFDF--SESISIPEGETHIITRSRFGAWTYSAPEYKRGGV- 253
              +L S  IL  +     + D   +           I    R G   Y APE     + 
Sbjct: 130 AHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSIN 189

Query: 254 -----FNEKLDVYTFSTVLLELLTGQ---STRDLLRTHGSVRHLIEYLKNYLQNNRFTEI 305
                  ++ D+Y    V  E+          +  +         +     ++     + 
Sbjct: 190 MKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQK 249

Query: 306 ADPIIVQDLSCTETEHQFQACARLTLECLNESP 338
             P I       E        A++  EC   + 
Sbjct: 250 LRPNIPNRWQSCEALRVM---AKIMRECWYANG 279

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.8 bits (230), Expect = 2e-22
 Identities = 38/211 (18%), Positives = 77/211 (36%), Gaps = 11/211 (5%)

Query: 71  NNYDERKFIKQDSTYKLYKGFWQE--RLISVMKYNESYSDSACKFSINNIVYAAQMDHKH 128
            ++D  + + + +  ++     +     ++V   +   +    +     I     ++H++
Sbjct: 5   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 64

Query: 129 ILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYL 188
           ++K  G   E  I  L  EY     L DRI          +      +    +   + YL
Sbjct: 65  VVKFYGHRREGNIQYLFLEYCSGGELFDRIE-----PDIGMPEPDAQRFFHQLMAGVVYL 119

Query: 189 HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEY 248
           H      I   ++    +L +E +  K+ DF  +          +     G   Y APE 
Sbjct: 120 H---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPEL 176

Query: 249 KRGGVFN-EKLDVYTFSTVLLELLTGQSTRD 278
            +   F+ E +DV++   VL  +L G+   D
Sbjct: 177 LKRREFHAEPVDVWSCGIVLTAMLAGELPWD 207

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.7 bits (232), Expect = 2e-22
 Identities = 45/257 (17%), Positives = 93/257 (36%), Gaps = 32/257 (12%)

Query: 46  ELIASSHGKY---NPYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFW-------QER 95
           ++  SS  +Y   +        + E    N +  K +   +  K+               
Sbjct: 9   QVTGSSDNEYFYVDFREYEYDLKWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSI 68

Query: 96  LISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIPILVFEYGEYTTL 154
            ++V    E    S  +  ++ +    Q+  H++I+ L+G C  +    L+FEY  Y  L
Sbjct: 69  QVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDL 128

Query: 155 RDRIFGAPQPHFE------------------PLLLKHRLKVAMGIAHALAYLHVGFPRPI 196
            + +    +   E                   L  +  L  A  +A  + +L     +  
Sbjct: 129 LNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSC 185

Query: 197 VFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNE 256
           V  +L +  +L     V K+ DF  +  I     +++  +      + APE    G++  
Sbjct: 186 VHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTI 245

Query: 257 KLDVYTFSTVLLELLTG 273
           K DV+++  +L E+ + 
Sbjct: 246 KSDVWSYGILLWEIFSL 262

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.1 bits (228), Expect = 4e-22
 Identities = 48/276 (17%), Positives = 99/276 (35%), Gaps = 31/276 (11%)

Query: 65  ELEIATNNYDERKFIKQDSTYKLYKGFWQE--RLISVMKYNESYSDSACKFSINNIVYAA 122
           + E+   +   +  +      ++Y+G W++    ++V    E   +   +F +       
Sbjct: 11  KWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE-EF-LKEAAVMK 68

Query: 123 QMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIA 182
           ++ H ++++L+G C   P   ++ E+  Y  L D +    +           L +A  I+
Sbjct: 69  EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSA---VVLLYMATQIS 125

Query: 183 HALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWT 242
            A+ YL     +  +  +L +   L  E ++ K+ DF  S  +          ++     
Sbjct: 126 SAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAK-FPIK 181

Query: 243 YSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRF 302
           ++APE      F+ K DV+ F  +L E+ T   +         V  L+E           
Sbjct: 182 WTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLE----------- 230

Query: 303 TEIADPIIVQDLSCTETEHQFQACARLTLECLNESP 338
                    +D      E   +    L   C   +P
Sbjct: 231 ---------KDYRMERPEGCPEKVYELMRACWQWNP 257

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 91.6 bits (227), Expect = 9e-22
 Identities = 44/217 (20%), Positives = 84/217 (38%), Gaps = 17/217 (7%)

Query: 97  ISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRD 156
           I  M Y+   S+   +  I  + +  ++ H + ++  GC L      LV EY   +    
Sbjct: 45  IKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDL 104

Query: 157 RIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKL 216
                   H +PL       V  G    LAYLH      ++  ++ +  IL +E  + KL
Sbjct: 105 LEV-----HKKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKL 156

Query: 217 FDFSESISIPEGETHIITRSRFGAWTYSAPEYKRG---GVFNEKLDVYTFSTVLLELLTG 273
            DF  +  +    + + T        + APE       G ++ K+DV++     +EL   
Sbjct: 157 GDFGSASIMAPANSFVGTPY------WMAPEVILAMDEGQYDGKVDVWSLGITCIELAER 210

Query: 274 QSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPII 310
           +     +    ++ H+ +     LQ+  ++E     +
Sbjct: 211 KPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFV 247

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.6 bits (224), Expect = 1e-21
 Identities = 48/279 (17%), Positives = 98/279 (35%), Gaps = 35/279 (12%)

Query: 68  IATNNYDERKFIKQDSTYKLYKGFWQERL-------ISVMKYNESYSDSACKFSINNIVY 120
           I   +    + +   S   + +G W           +  +K +      A    I  +  
Sbjct: 5   IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA 64

Query: 121 AAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMG 180
              +DH+++++L G  L  P+  +V E     +L DR+      H    LL    + A+ 
Sbjct: 65  MHSLDHRNLIRLYGVVLTPPM-KMVTELAPLGSLLDRLRK----HQGHFLLGTLSRYAVQ 119

Query: 181 IAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRF-G 239
           +A  + YL     +  +  +L +  +L    ++ K+ DF    ++P+ + H + +     
Sbjct: 120 VAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKV 176

Query: 240 AWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQN 299
            + + APE  +   F+   D + F   L E+ T                   Y +     
Sbjct: 177 PFAWCAPESLKTRTFSHASDTWMFGVTLWEMFT-------------------YGQEPWIG 217

Query: 300 NRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP 338
              ++I   I  +       E   Q    + ++C    P
Sbjct: 218 LNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKP 256

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.8 bits (225), Expect = 1e-21
 Identities = 36/207 (17%), Positives = 74/207 (35%), Gaps = 14/207 (6%)

Query: 70  TNNYDERKFIKQDSTYKLYKGFWQE--RLISVMKYNESYSDSACKFSINNIVYAAQMDHK 127
              Y   + I Q ++  +Y        + +++ + N           IN I+   +  + 
Sbjct: 19  KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELI-INEILVMRENKNP 77

Query: 128 HILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAY 187
           +I+  +   L      +V EY    +L D +                  V      AL +
Sbjct: 78  NIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMD------EGQIAAVCRECLQALEF 131

Query: 188 LHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPE 247
           LH      ++  ++ S  IL   +   KL DF     I   ++     +  G   + APE
Sbjct: 132 LH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK--RSTMVGTPYWMAPE 186

Query: 248 YKRGGVFNEKLDVYTFSTVLLELLTGQ 274
                 +  K+D+++   + +E++ G+
Sbjct: 187 VVTRKAYGPKVDIWSLGIMAIEMIEGE 213

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.0 bits (225), Expect = 2e-21
 Identities = 43/309 (13%), Positives = 100/309 (32%), Gaps = 43/309 (13%)

Query: 51  SHGKYNPYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQE-------RLISVMKYN 103
           ++   +P ++    + E   N     K +   +  K+ +              ++V    
Sbjct: 3   NYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLK 62

Query: 104 ESYSDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIF--- 159
            S   +  +  ++ +   + + +H +I+ L+G C      +++ EY  Y  L + +    
Sbjct: 63  PSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKR 122

Query: 160 ----------GAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFN 209
                        +     L L+  L  +  +A  +A+L     +  +  +L +  IL  
Sbjct: 123 DSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNILLT 179

Query: 210 EENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLE 269
              + K+ DF  +  I     +++  +      + APE     V+  + DV+++   L E
Sbjct: 180 HGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWE 239

Query: 270 LLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARL 329
           L +                      +             +I +       EH       +
Sbjct: 240 LFSLG-------------------SSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDI 280

Query: 330 TLECLNESP 338
              C +  P
Sbjct: 281 MKTCWDADP 289

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.7 bits (222), Expect = 2e-21
 Identities = 35/210 (16%), Positives = 81/210 (38%), Gaps = 10/210 (4%)

Query: 72  NYDERKFIKQDSTYKLYKGFWQE--RLISVMKYN-ESYSDSACKFSINNIVYAAQMDHKH 128
           +Y+    I   S  +  K   +   +++   + +  S +++  +  ++ +    ++ H +
Sbjct: 5   DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPN 64

Query: 129 ILKLIGCCLETP--IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALA 186
           I++     ++       +V EY E   L   I    +   + L  +  L+V   +  AL 
Sbjct: 65  IVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKER-QYLDEEFVLRVMTQLTLALK 123

Query: 187 YLH--VGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYS 244
             H        ++  +L    +  + +   KL DF  +  +    +    ++  G   Y 
Sbjct: 124 ECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSF--AKAFVGTPYYM 181

Query: 245 APEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
           +PE      +NEK D+++   +L EL    
Sbjct: 182 SPEQMNRMSYNEKSDIWSLGCLLYELCALM 211

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.8 bits (222), Expect = 2e-21
 Identities = 49/251 (19%), Positives = 91/251 (36%), Gaps = 14/251 (5%)

Query: 65  ELEIATNNYDERKFIKQDSTYKLYKGFW-----QERLISVMKYNESYSDSACKFSINNIV 119
           + EI     +  + I +     +++G +         +++       SDS  +  +   +
Sbjct: 1   DYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEAL 60

Query: 120 YAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAM 179
              Q DH HI+KLIG   E P+ I + E      LR  +          L L   +  A 
Sbjct: 61  TMRQFDHPHIVKLIGVITENPVWI-IMELCTLGELRSFLQV----RKYSLDLASLILYAY 115

Query: 180 GIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFG 239
            ++ ALAYL     +  V  ++ +  +L +  +  KL DF  S  + +   +  ++ +  
Sbjct: 116 QLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGK-L 171

Query: 240 AWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQN 299
              + APE      F    DV+ F   + E+L           +  V   IE  +     
Sbjct: 172 PIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMP 231

Query: 300 NRFTEIADPII 310
                    ++
Sbjct: 232 PNCPPTLYSLM 242

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.8 bits (222), Expect = 3e-21
 Identities = 54/252 (21%), Positives = 93/252 (36%), Gaps = 9/252 (3%)

Query: 61  FSAKELEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVY 120
            +    EI   +      + Q    +++ G W       +K  +  + S   F +     
Sbjct: 7   LAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAF-LQEAQV 65

Query: 121 AAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMG 180
             ++ H+ +++L     E PI I V EY    +L D + G    +     L   + +A  
Sbjct: 66  MKKLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGETGKYLR---LPQLVDMAAQ 121

Query: 181 IAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA 240
           IA  +AY+        V  +L +  IL  E  V K+ DF  +  I + E      ++   
Sbjct: 122 IASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAK-FP 177

Query: 241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNN 300
             ++APE    G F  K DV++F  +L EL T          +  V   +E         
Sbjct: 178 IKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPP 237

Query: 301 RFTEIADPIIVQ 312
              E    ++ Q
Sbjct: 238 ECPESLHDLMCQ 249

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.5 bits (219), Expect = 8e-21
 Identities = 42/195 (21%), Positives = 71/195 (36%), Gaps = 15/195 (7%)

Query: 86  KLYKGFWQERLISV-MKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL 144
           K+YK   +E  +    K  ++ S+   +  +  I   A  DH +I+KL+          +
Sbjct: 27  KVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWI 86

Query: 145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISL 204
           + E+     +   +         PL       V      AL YLH      I+  +L + 
Sbjct: 87  LIEFCAGGAVDAVMLE----LERPLTESQIQVVCKQTLDALNYLH---DNKIIHRDLKAG 139

Query: 205 CILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEY-----KRGGVFNEKLD 259
            ILF  +   KL DF  S             S  G   + APE       +   ++ K D
Sbjct: 140 NILFTLDGDIKLADFGVSAKNTRTIQR--RDSFIGTPYWMAPEVVMCETSKDRPYDYKAD 197

Query: 260 VYTFSTVLLELLTGQ 274
           V++    L+E+   +
Sbjct: 198 VWSLGITLIEMAEIE 212

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.9 bits (217), Expect = 2e-20
 Identities = 38/207 (18%), Positives = 82/207 (39%), Gaps = 14/207 (6%)

Query: 73  YDERKFIKQDSTYKLYKGFWQE------RLISVMKYNESYSDSACKFSINNIVYAAQMDH 126
           + + K +   +   +YKG W          +++ +  E+ S  A K  ++     A +D+
Sbjct: 11  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDN 70

Query: 127 KHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALA 186
            H+ +L+G CL + + ++  +   +  L D +             ++ L   + IA  + 
Sbjct: 71  PHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGS----QYLLNWCVQIAKGMN 125

Query: 187 YLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAP 246
           YL     R +V  +L +  +L       K+ DF  +  +   E             + A 
Sbjct: 126 YLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMAL 182

Query: 247 EYKRGGVFNEKLDVYTFSTVLLELLTG 273
           E     ++  + DV+++   + EL+T 
Sbjct: 183 ESILHRIYTHQSDVWSYGVTVWELMTF 209

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.2 bits (215), Expect = 3e-20
 Identities = 48/248 (19%), Positives = 97/248 (39%), Gaps = 15/248 (6%)

Query: 55  YNPYRIFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQ-------ERLISVMKYNESYS 107
           ++   ++   E E+A       + + Q S   +Y+G  +       E  +++   NE+ S
Sbjct: 4   FSAADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAAS 63

Query: 108 DSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRI-----FGAP 162
                  +N      + +  H+++L+G   +    +++ E      L+  +       A 
Sbjct: 64  MRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMAN 123

Query: 163 QPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSES 222
            P   P  L   +++A  IA  +AYL+       V  +L +   +  E+   K+ DF  +
Sbjct: 124 NPVLAPPSLSKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTVKIGDFGMT 180

Query: 223 ISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT 282
             I E + +           + +PE  + GVF    DV++F  VL E+ T         +
Sbjct: 181 RDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLS 240

Query: 283 HGSVRHLI 290
           +  V   +
Sbjct: 241 NEQVLRFV 248

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.4 bits (213), Expect = 5e-20
 Identities = 50/279 (17%), Positives = 91/279 (32%), Gaps = 34/279 (12%)

Query: 67  EIATNNYDERKFIKQDSTYKLYKGFW------QERLISVMKYNESYSDSACKFSINNIVY 120
           EI  +    +K I      ++YKG        +E  +++      Y++      +     
Sbjct: 3   EIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGI 62

Query: 121 AAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMG 180
             Q  H +I++L G   +    +++ EY E   L   +            +   + +  G
Sbjct: 63  MGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLRE----KDGEFSVLQLVGMLRG 118

Query: 181 IAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRF-G 239
           IA  + YL        V  +L +  IL N   V K+ DF  S  + +      T S    
Sbjct: 119 IAAGMKYLA---NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKI 175

Query: 240 AWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQN 299
              ++APE      F    DV++F  V+ E++T         ++  V             
Sbjct: 176 PIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMK----------- 224

Query: 300 NRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP 338
                     I              A  +L ++C  +  
Sbjct: 225 ---------AINDGFRLPTPMDCPSAIYQLMMQCWQQER 254

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 85.9 bits (212), Expect = 1e-19
 Identities = 32/227 (14%), Positives = 86/227 (37%), Gaps = 17/227 (7%)

Query: 55  YNPYRIFSAKELEIAT----NNYDERKFIKQDSTYKLYKGFWQERLISV-MKYNESYSDS 109
           ++ ++ +  + +EI      ++YD  + +   +   +++   +    +   K+  +  +S
Sbjct: 6   FDIWKQYYPQPVEIKHDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHES 65

Query: 110 ACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPL 169
             +     I   + + H  ++ L     +    ++++E+     L +++          +
Sbjct: 66  DKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHN----KM 121

Query: 170 LLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFN--EENVAKLFDFSESISIPE 227
                ++    +   L ++H       V  +L    I+F     N  KL DF  +  +  
Sbjct: 122 SEDEAVEYMRQVCKGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDP 178

Query: 228 GETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
            ++  +T    G   ++APE   G       D+++   +   LL+G 
Sbjct: 179 KQSVKVTT---GTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGL 222

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.8 bits (209), Expect = 2e-19
 Identities = 35/197 (17%), Positives = 74/197 (37%), Gaps = 15/197 (7%)

Query: 86  KLYKGFW-----QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETP 140
            +Y G       ++   +V   N           +   +      H ++L L+G CL + 
Sbjct: 42  CVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSE 101

Query: 141 -IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFG 199
             P++V  Y ++  LR+      +       +K  +   + +A  + +L     +  V  
Sbjct: 102 GSPLVVLPYMKHGDLRNF----IRNETHNPTVKDLIGFGLQVAKGMKFLA---SKKFVHR 154

Query: 200 NLISLCILFNEENVAKLFD--FSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEK 257
           +L +   + +E+   K+ D   +  +   E ++            + A E  +   F  K
Sbjct: 155 DLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTK 214

Query: 258 LDVYTFSTVLLELLTGQ 274
            DV++F  +L EL+T  
Sbjct: 215 SDVWSFGVLLWELMTRG 231

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.5 bits (208), Expect = 4e-19
 Identities = 42/237 (17%), Positives = 82/237 (34%), Gaps = 22/237 (9%)

Query: 71  NNYDERKFIKQDSTYKLYKGFW----QERLISVMKYNESYSDSACKFSINNIVYAAQM-D 125
           N+   +  I + +  ++ K            ++ +  E  S    +     +    ++  
Sbjct: 10  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 69

Query: 126 HKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEP-----------LLLKHR 174
           H +I+ L+G C       L  EY  +  L D +  +     +P           L  +  
Sbjct: 70  HPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL 129

Query: 175 LKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIIT 234
           L  A  +A  + YL     +  +  +L +  IL  E  VAK+ DF  S          + 
Sbjct: 130 LHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMG 186

Query: 235 RSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIE 291
           R       + A E     V+    DV+++  +L E+++   T     T   +   + 
Sbjct: 187 R---LPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLP 240

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 83.5 bits (206), Expect = 5e-19
 Identities = 35/213 (16%), Positives = 71/213 (33%), Gaps = 10/213 (4%)

Query: 64  KELEIATNNYDERKFIKQDSTYKLYKGFWQE--RLISVMKYNESYSDSACKFSINNIVYA 121
           K+ E   + YD R  +   +  ++     +   +L+++    +   +       N I   
Sbjct: 2   KQAEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVL 61

Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
            ++ H +I+ L           L+ +      L DRI             +   ++   +
Sbjct: 62  HKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIV-----EKGFYTERDASRLIFQV 116

Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAW 241
             A+ YLH              L    +E++   + DF  S     G       +  G  
Sbjct: 117 LDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSV---LSTACGTP 173

Query: 242 TYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
            Y APE      +++ +D ++   +   LL G 
Sbjct: 174 GYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGY 206

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 83.6 bits (206), Expect = 9e-19
 Identities = 33/208 (15%), Positives = 68/208 (32%), Gaps = 15/208 (7%)

Query: 71  NNYDERKFIKQDSTYKLYKGFWQE--RLISVMKYNESYSDSACKFSINNIVYAAQMDHKH 128
           + YD  + +   +   +++   +   R+      N  Y         N I    Q+ H  
Sbjct: 29  DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTV-KNEISIMNQLHHPK 87

Query: 129 ILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYL 188
           ++ L     +    +L+ E+     L DRI          +     +         L ++
Sbjct: 88  LINLHDAFEDKYEMVLILEFLSGGELFDRI----AAEDYKMSEAEVINYMRQACEGLKHM 143

Query: 189 HVGFPRPIVFGNLISLCILF--NEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAP 246
           H      IV  ++    I+    + +  K+ DF  +  +   E   +T        ++AP
Sbjct: 144 H---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTT---ATAEFAAP 197

Query: 247 EYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
           E           D++    +   LL+G 
Sbjct: 198 EIVDREPVGFYTDMWAIGVLGYVLLSGL 225

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.6 bits (203), Expect = 1e-18
 Identities = 41/231 (17%), Positives = 86/231 (37%), Gaps = 24/231 (10%)

Query: 64  KELEIATNNYDERKFIKQDSTYKLYKGFW---------QERLISVMKYNESYSDSACKFS 114
              E+  +     K + + +  ++              +   ++V       ++      
Sbjct: 6   PRWELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDL 65

Query: 115 INNIVYAAQM-DHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFE------ 167
           I+ +     +  HK+I+ L+G C +     ++ EY     LR+ +     P  E      
Sbjct: 66  ISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPS 125

Query: 168 -----PLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSES 222
                 L  K  +  A  +A  + YL     +  +  +L +  +L  E+NV K+ DF  +
Sbjct: 126 HNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLA 182

Query: 223 ISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTG 273
             I   + +  T +      + APE     ++  + DV++F  +L E+ T 
Sbjct: 183 RDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTL 233

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.6 bits (203), Expect = 1e-18
 Identities = 45/298 (15%), Positives = 104/298 (34%), Gaps = 42/298 (14%)

Query: 61  FSAKELEIATNNYDERKFIKQDSTYKLYKGFWQE-------RLISVMKYNESYSDSACKF 113
           + A + E   +     K + + +  ++ +            R ++V    E  + S  + 
Sbjct: 3   YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRA 62

Query: 114 SINNI-VYAAQMDHKHILKLIGCCLETPIPI-LVFEYGEYTTLRDRIFGAPQPHFE---- 167
            ++ + +      H +++ L+G C +   P+ ++ E+ ++  L   +             
Sbjct: 63  LMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVA 122

Query: 168 -------PLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS 220
                   L L+H +  +  +A  + +L     R  +  +L +  IL +E+NV K+ DF 
Sbjct: 123 PEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFG 179

Query: 221 ESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL 280
            +  I +   ++          + APE     V+  + DV++F  +L E+ +        
Sbjct: 180 LARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLG------ 233

Query: 281 RTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP 338
            +      + E     L+        D                    +  L+C +  P
Sbjct: 234 ASPYPGVKIDEEFCRRLKEGTRMRAPDYTT-------------PEMYQTMLDCWHGEP 278

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.0 bits (202), Expect = 2e-18
 Identities = 31/155 (20%), Positives = 62/155 (40%), Gaps = 12/155 (7%)

Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
               H++IL L          +++FE+     + +RI          L  +  +     +
Sbjct: 56  NIARHRNILHLHESFESMEELVMIFEFISGLDIFERI----NTSAFELNEREIVSYVHQV 111

Query: 182 AHALAYLHVGFPRPIVFGNLISLCILF--NEENVAKLFDFSESISIPEGETHIITRSRFG 239
             AL +LH      I   ++    I++     +  K+ +F ++  +  G+     R  F 
Sbjct: 112 CEALQFLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDN---FRLLFT 165

Query: 240 AWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
           A  Y APE  +  V +   D+++  T++  LL+G 
Sbjct: 166 APEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGI 200

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 80.9 bits (199), Expect = 3e-18
 Identities = 45/214 (21%), Positives = 89/214 (41%), Gaps = 17/214 (7%)

Query: 70  TNNYDERKFIKQDSTYKLYKGFW----QERLISVMKYNESYSDSACKFSINNIVYAAQMD 125
           ++ Y+  + +      +++        ++  + V++ + +   S           AA ++
Sbjct: 6   SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN 65

Query: 126 HKHILKLIGCCLET----PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           H  I+ +           P+P +V EY +  TLRD +         P+  K  ++V    
Sbjct: 66  HPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVH-----TEGPMTPKRAIEVIADA 120

Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHII-TRSRFGA 240
             AL + H      I+  ++    I+ +  N  K+ DF  + +I +    +  T +  G 
Sbjct: 121 CQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGT 177

Query: 241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
             Y +PE  RG   + + DVY+   VL E+LTG+
Sbjct: 178 AQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGE 211

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.5 bits (198), Expect = 9e-18
 Identities = 45/210 (21%), Positives = 76/210 (36%), Gaps = 15/210 (7%)

Query: 71  NNYDERKFIKQDSTYKLYKGFW----QERLISVMKYNESYSDSACKFSINNI-VYAAQMD 125
            ++   K + + S  K++   +    Q   I  +K +    D   + ++    V +   +
Sbjct: 2   EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWE 61

Query: 126 HKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHAL 185
           H  +  +            V EY     L   I            L      A  I   L
Sbjct: 62  HPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQ-----SCHKFDLSRATFYAAEIILGL 116

Query: 186 AYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSA 245
            +LH    + IV+ +L    IL +++   K+ DF        G+    T    G   Y A
Sbjct: 117 QFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFC--GTPDYIA 171

Query: 246 PEYKRGGVFNEKLDVYTFSTVLLELLTGQS 275
           PE   G  +N  +D ++F  +L E+L GQS
Sbjct: 172 PEILLGQKYNHSVDWWSFGVLLYEMLIGQS 201

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.6 bits (188), Expect = 9e-17
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 19/197 (9%)

Query: 86  KLYKGFWQE--RLISVMKYNESYSDSACKFSINN-IVYAAQMDHKHILKLIGCCLET--- 139
            +YKG   E    ++  +  +     + +            + H +I++       T   
Sbjct: 24  TVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKG 83

Query: 140 -PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVF 198
               +LV E     TL+  +       F+ + +K        I   L +LH   P PI+ 
Sbjct: 84  KKCIVLVTELMTSGTLKTYLK-----RFKVMKIKVLRSWCRQILKGLQFLHTRTP-PIIH 137

Query: 199 GNLISLCILFNEEN-VAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEK 257
            +L    I         K+ D   +            ++  G   + APE      ++E 
Sbjct: 138 RDLKCDNIFITGPTGSVKIGDLGLATLKRAS----FAKAVIGTPEFMAPEMYEEK-YDES 192

Query: 258 LDVYTFSTVLLELLTGQ 274
           +DVY F   +LE+ T +
Sbjct: 193 VDVYAFGMCMLEMATSE 209

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.7 bits (188), Expect = 3e-16
 Identities = 24/211 (11%), Positives = 64/211 (30%), Gaps = 18/211 (8%)

Query: 71  NNYDERKFIKQDSTYKLYKGFWQE-------RLISVMKYNESYSDSACKFSINNIVYAAQ 123
           N++   + I +    ++Y     +       + +   +      ++        +   + 
Sbjct: 4   NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 63

Query: 124 MDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAH 183
            D   I+ +            + +      L   +                   A  I  
Sbjct: 64  GDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFS-----EADMRFYAAEIIL 118

Query: 184 ALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTY 243
            L ++H    R +V+ +L    IL +E    ++ D   +    + + H    +       
Sbjct: 119 GLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTH---GYM 172

Query: 244 SAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
           +    ++G  ++   D ++   +L +LL G 
Sbjct: 173 APEVLQKGVAYDSSADWFSLGCMLFKLLRGH 203

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (185), Expect = 4e-16
 Identities = 38/226 (16%), Positives = 76/226 (33%), Gaps = 25/226 (11%)

Query: 60  IFSAKELEIATNNYDERKFIKQDSTYKLYKGFWQE-------RLISVMKYNESYSDSACK 112
           +F  + ++   + YD  + +       + K   +        + I   +   S    + +
Sbjct: 2   VFRQENVD---DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSRE 58

Query: 113 FSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLK 172
                +    ++ H +++ L          IL+ E      L D          E L  +
Sbjct: 59  DIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFD-----FLAEKESLTEE 113

Query: 173 HRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVA----KLFDFSESISIPEG 228
              +    I + + YLH      I   +L    I+  + NV     K+ DF  +  I  G
Sbjct: 114 EATEFLKQILNGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFG 170

Query: 229 ETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
                 ++ FG   + APE         + D+++   +   LL+G 
Sbjct: 171 NE---FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGA 213

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.3 bits (184), Expect = 4e-16
 Identities = 31/175 (17%), Positives = 57/175 (32%), Gaps = 9/175 (5%)

Query: 100 MKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIF 159
           + +     D   + ++  I    ++ H +I+ L+          LVF++ E         
Sbjct: 33  LGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKD 92

Query: 160 GAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDF 219
            +           H     +     L YLH      I+  +L    +L +E  V KL DF
Sbjct: 93  NSLVLT-----PSHIKAYMLMTLQGLEYLH---QHWILHRDLKPNNLLLDENGVLKLADF 144

Query: 220 SESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
             + S         T      W  +        ++   +D++    +L ELL   
Sbjct: 145 GLAKSFGSPNRA-YTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRV 198

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.1 bits (184), Expect = 7e-16
 Identities = 34/209 (16%), Positives = 79/209 (37%), Gaps = 17/209 (8%)

Query: 71  NNYDERKFIKQDSTYKLYKGFW----QERLISVMKYNESYSDSACKFSINNIVYAAQMDH 126
            ++   + +   S  +++        +   + V+K          + + +  +  + + H
Sbjct: 4   QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTH 63

Query: 127 KHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALA 186
             I+++ G   +     ++ +Y E   L            +          A  +  AL 
Sbjct: 64  PFIIRMWGTFQDAQQIFMIMDYIEGGELFSL-----LRKSQRFPNPVAKFYAAEVCLALE 118

Query: 187 YLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAP 246
           YLH    + I++ +L    IL ++    K+ DF  +  +P+    +      G   Y AP
Sbjct: 119 YLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLC-----GTPDYIAP 170

Query: 247 EYKRGGVFNEKLDVYTFSTVLLELLTGQS 275
           E      +N+ +D ++F  ++ E+L G +
Sbjct: 171 EVVSTKPYNKSIDWWSFGILIYEMLAGYT 199

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 70.3 bits (171), Expect = 2e-14
 Identities = 32/206 (15%), Positives = 68/206 (33%), Gaps = 11/206 (5%)

Query: 71  NNYDERKFIKQDSTYKLYKGFWQERLISVMK--YNESYSDSACKFSINNIVYAAQMDHKH 128
             Y   + I + +   +YK          +K    E   +     +I  I    ++ H +
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSN 61

Query: 129 ILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYL 188
           I+KL          +LVFE+ +    +             L         + + + +AY 
Sbjct: 62  IVKLYDVIHTKKRLVLVFEHLDQDLKKLLDV-----CEGGLESVTAKSFLLQLLNGIAYC 116

Query: 189 HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEY 248
           H    R ++  +L    +L N E   K+ DF  + +                W  +    
Sbjct: 117 H---DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVT-LWYRAPDVL 172

Query: 249 KRGGVFNEKLDVYTFSTVLLELLTGQ 274
                ++  +D+++   +  E++ G 
Sbjct: 173 MGSKKYSTTIDIWSVGCIFAEMVNGT 198

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 68.9 bits (168), Expect = 5e-14
 Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 17/156 (10%)

Query: 125 DHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHA 184
            H +I++L           LVF+  +   L D +          L  K   K+   +   
Sbjct: 68  GHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYL-----TEKVTLSEKETRKIMRALLEV 122

Query: 185 LAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYS 244
           +  LH      IV  +L    IL +++   KL DF  S  +  GE     R   G  +Y 
Sbjct: 123 ICALH---KLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEK---LREVCGTPSYL 176

Query: 245 APEYKRGGV------FNEKLDVYTFSTVLLELLTGQ 274
           APE     +      + +++D+++   ++  LL G 
Sbjct: 177 APEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGS 212

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (166), Expect = 1e-13
 Identities = 26/158 (16%), Positives = 55/158 (34%), Gaps = 16/158 (10%)

Query: 124 MDHKHILKLIGCC----LETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAM 179
               HI++++             ++V E  +   L  RI        +    +   ++  
Sbjct: 62  SQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQ---DRGDQAFTEREASEIMK 118

Query: 180 GIAHALAYLHVGFPRPIVFGNLISLCILFNEEN---VAKLFDFSESISIPEGETHIITRS 236
            I  A+ YLH      I   ++    +L+  +    + KL DF  +       +     +
Sbjct: 119 SIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSL---TT 172

Query: 237 RFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
                 Y APE      +++  D+++   ++  LL G 
Sbjct: 173 PCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGY 210

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (164), Expect = 2e-13
 Identities = 30/206 (14%), Positives = 75/206 (36%), Gaps = 11/206 (5%)

Query: 72  NYDERKFIKQDSTYKLYKGFWQE--RLISVMKYN-ESYSDSACKFSINNIVYAAQMDHKH 128
           N+ + + I + +   +YK   +    ++++ K   ++ ++     +I  I    +++H +
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62

Query: 129 ILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYL 188
           I+KL+          LVFE+      +             + L         +   LA+ 
Sbjct: 63  IVKLLDVIHTENKLYLVFEFLHQDLKKFMD----ASALTGIPLPLIKSYLFQLLQGLAFC 118

Query: 189 HVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEY 248
           H      ++  +L    +L N E   KL DF  + +                +  +    
Sbjct: 119 H---SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWY-RAPEIL 174

Query: 249 KRGGVFNEKLDVYTFSTVLLELLTGQ 274
                ++  +D+++   +  E++T +
Sbjct: 175 LGCKYYSTAVDIWSLGCIFAEMVTRR 200

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (165), Expect = 2e-13
 Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 16/171 (9%)

Query: 112 KFSINNIVYAAQMDHKHILKLIGCCLET------PIPILVFEYGEYTTLRDRIFGAPQPH 165
           +F    +    ++DH +I++L      +          LV +Y   T  R     +    
Sbjct: 58  RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAK- 116

Query: 166 FEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN-VAKLFDFSESIS 224
            + L + +       +  +LAY+H      I   ++    +L + +  V KL DF  +  
Sbjct: 117 -QTLPVIYVKLYMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ 172

Query: 225 IPEGETHIITRSRFGAWTYSAPEYKRGGV-FNEKLDVYTFSTVLLELLTGQ 274
           +  GE +    S   +  Y APE   G   +   +DV++   VL ELL GQ
Sbjct: 173 LVRGEPN---VSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQ 220

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (163), Expect = 4e-13
 Identities = 30/213 (14%), Positives = 72/213 (33%), Gaps = 17/213 (7%)

Query: 70  TNNYDERKFIKQDSTYKLYKGFWQE--RLISVMKYNESYSDSACKFSINNIVYAAQMDHK 127
              Y    +I + +   +   +       +++ K +     + C+ ++  I    +  H+
Sbjct: 7   GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHE 66

Query: 128 HILKLIGCCLETPI----PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAH 183
           +I+ +        I     + +  +     L   +        + L   H       I  
Sbjct: 67  NIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLL------KTQHLSNDHICYFLYQILR 120

Query: 184 ALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRF-GAWT 242
            L Y+H      ++  +L    +L N     K+ DF  +        H    + +     
Sbjct: 121 GLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRW 177

Query: 243 YSAPEY-KRGGVFNEKLDVYTFSTVLLELLTGQ 274
           Y APE       + + +D+++   +L E+L+ +
Sbjct: 178 YRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNR 210

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (157), Expect = 2e-12
 Identities = 30/211 (14%), Positives = 67/211 (31%), Gaps = 14/211 (6%)

Query: 68  IATNNYDERKFIKQDSTYKLYKGFW----QERLISVMKYNESYSDSACKFSINNIVYAAQ 123
           +  N++D  K + + +  K+         +   + +++     +      ++        
Sbjct: 2   VTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQN 61

Query: 124 MDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAH 183
             H  +  L            V EY     L   +             +        I  
Sbjct: 62  TRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLS-----RERVFTEERARFYGAEIVS 116

Query: 184 ALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTY 243
           AL YLH    R +V+ ++    ++ +++   K+ DF               ++  G   Y
Sbjct: 117 ALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGAT--MKTFCGTPEY 171

Query: 244 SAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
            APE      +   +D +    V+ E++ G+
Sbjct: 172 LAPEVLEDNDYGRAVDWWGLGVVMYEMMCGR 202

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.7 bits (154), Expect = 3e-12
 Identities = 26/162 (16%), Positives = 49/162 (30%), Gaps = 17/162 (10%)

Query: 122 AQMDHKHILKLIG-CCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMG 180
             M     +  I  C  E    ++V E    +      F           LK  L +A  
Sbjct: 57  KMMQGGVGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNF-----CSRKFSLKTVLLLADQ 111

Query: 181 IAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKL---FDFSESISIPEGETHII---- 233
           +   + Y+H    +  +  ++     L        L    DF  +    +  TH      
Sbjct: 112 MISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYR 168

Query: 234 -TRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
             ++  G   Y++     G   + + D+ +   VL+    G 
Sbjct: 169 ENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGS 210

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (149), Expect = 2e-11
 Identities = 31/214 (14%), Positives = 68/214 (31%), Gaps = 14/214 (6%)

Query: 69  ATNNYDERKFIKQDSTYKLYKGFWQE---RLISVMKYNESYSDSACKFSINNIV----YA 121
           A   Y+    I + +  K++K    +   R +++ +      +     S    V    + 
Sbjct: 5   ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHL 64

Query: 122 AQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLL-LKHRLKVAMG 180
              +H ++++L   C  +           +  +   +        EP +  +    +   
Sbjct: 65  ETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQ 124

Query: 181 IAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGA 240
           +   L +LH      +V  +L    IL       KL DF  +             S    
Sbjct: 125 LLRGLDFLHS---HRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMAL---TSVVVT 178

Query: 241 WTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
             Y APE      +   +D+++   +  E+   +
Sbjct: 179 LWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRK 212

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.3 bits (148), Expect = 2e-11
 Identities = 22/161 (13%), Positives = 49/161 (30%), Gaps = 13/161 (8%)

Query: 117 NIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLK 176
            ++         +++L+         +L+ E  E                  L  +    
Sbjct: 59  VLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG----ALQEELARS 114

Query: 177 VAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN-VAKLFDFSESISIPEGETHIITR 235
               +  A+ + H      ++  ++    IL +      KL DF     + +        
Sbjct: 115 FFWQVLEAVRHCH---NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDG 171

Query: 236 SRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQS 275
           +R     YS PE+ R          V++   +L +++ G  
Sbjct: 172 TRV----YSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI 208

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 2e-11
 Identities = 26/209 (12%), Positives = 66/209 (31%), Gaps = 14/209 (6%)

Query: 71  NNYDERKFIKQDSTYKLYKGFW----QERLISVMKYNESYSDSACKFSINNIVYAAQMDH 126
             Y++ + I + +   ++K       +   +  ++ ++          +  I    ++ H
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSA-LREICLLKELKH 60

Query: 127 KHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALA 186
           K+I++L           LVFE+ +    +           E             +   L 
Sbjct: 61  KNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPE-----IVKSFLFQLLKGLG 115

Query: 187 YLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAP 246
           + H    R ++  +L    +L N     KL +F  + +         +      W     
Sbjct: 116 FCH---SRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCY-SAEVVTLWYRPPD 171

Query: 247 EYKRGGVFNEKLDVYTFSTVLLELLTGQS 275
                 +++  +D+++   +  EL     
Sbjct: 172 VLFGAKLYSTSIDMWSAGCIFAELANAGR 200

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 60.2 bits (145), Expect = 5e-11
 Identities = 25/191 (13%), Positives = 49/191 (25%), Gaps = 13/191 (6%)

Query: 126 HKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHAL 185
              I  +     E    +LV +    +                  +K     A  +   +
Sbjct: 60  CTGIPNVYYFGQEGLHNVLVIDLLGPSLEDLL-----DLCGRKFSVKTVAMAAKQMLARV 114

Query: 186 AYLH--VGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHII-----TRSRF 238
             +H      R I   N +         N+  + DF       +  T         ++  
Sbjct: 115 QSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLS 174

Query: 239 GAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQ 298
           G   Y +     G   + + D+     V +  L G      L    + +   E +    Q
Sbjct: 175 GTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGL-KAATNKQKYERIGEKKQ 233

Query: 299 NNRFTEIADPI 309
           +    E+    
Sbjct: 234 STPLRELCAGF 244

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 6e-11
 Identities = 32/210 (15%), Positives = 78/210 (37%), Gaps = 6/210 (2%)

Query: 71  NNYDERKFIKQDSTYKLYKGFWQE--RLISVMKYN-ESYSDSACKFSINNIVYAAQMDHK 127
           + Y++   I Q +  +++K   ++  + +++ K   E+  +     ++  I     + H+
Sbjct: 10  SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHE 69

Query: 128 HILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAY 187
           +++ LI  C     P    +   Y                 L+     ++   +   L  
Sbjct: 70  NVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNG 129

Query: 188 LHVGFPRPIVFGNLISLCILFNEENVAKLFDF--SESISIPEGETHIITRSRFGAWTYSA 245
           L+      I+  ++ +  +L   + V KL DF  + + S+ +        +R     Y  
Sbjct: 130 LYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRP 189

Query: 246 PEYKRGG-VFNEKLDVYTFSTVLLELLTGQ 274
           PE   G   +   +D++    ++ E+ T  
Sbjct: 190 PELLLGERDYGPPIDLWGAGCIMAEMWTRS 219

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (138), Expect = 5e-10
 Identities = 32/152 (21%), Positives = 51/152 (33%), Gaps = 11/152 (7%)

Query: 125 DHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHA 184
               ++ L           L+ +Y     L   +        E             I  A
Sbjct: 87  QSPFLVTLHYAFQTETKLHLILDYINGGELFTHLS-----QRERFTEHEVQIYVGEIVLA 141

Query: 185 LAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYS 244
           L +LH      I++ ++    IL +      L DF  S      ET        G   Y 
Sbjct: 142 LEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETE-RAYDFCGTIEYM 197

Query: 245 APEYKRGGV--FNEKLDVYTFSTVLLELLTGQ 274
           AP+  RGG    ++ +D ++   ++ ELLTG 
Sbjct: 198 APDIVRGGDSGHDKAVDWWSLGVLMYELLTGA 229

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 56.4 bits (135), Expect = 1e-09
 Identities = 30/229 (13%), Positives = 75/229 (32%), Gaps = 26/229 (11%)

Query: 56  NPYRIFSAKELEIATNNYDERKFIK---QDSTYKLYKGFWQE--RLISVMKYNESYSDSA 110
            P   +  +   +   N D+ + ++   +    ++++         + V           
Sbjct: 17  RPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKK-- 74

Query: 111 CKFSINNIVYAAQMDHKHILKLIGCCLE--TPIPILVFEYGEYTTLRDRIFGAPQPHFEP 168
            K      +        +I+ L     +  +  P LVFE+   T  +           + 
Sbjct: 75  -KIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLY--------QT 125

Query: 169 LLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN-VAKLFDFSESISIPE 227
           L           I  AL Y H      I+  ++    ++ + E+   +L D+  +     
Sbjct: 126 LTDYDIRFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHP 182

Query: 228 GETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQS 275
           G+ +     R  +  +  PE      +++  LD+++   +L  ++  + 
Sbjct: 183 GQEY---NVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKE 228

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.2 bits (132), Expect = 3e-09
 Identities = 27/208 (12%), Positives = 67/208 (32%), Gaps = 17/208 (8%)

Query: 71  NNYDERKFIKQDSTYKLYKGFW----QERLISVMKYNESYSDSACKFSINNIVYAAQMDH 126
           + +D  K +   S  ++             + ++   +       + ++N       ++ 
Sbjct: 41  DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100

Query: 127 KHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALA 186
             ++KL     +     +V EY     +   +              H    A  I     
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR-----RIGRFSEPHARFYAAQIVLTFE 155

Query: 187 YLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAP 246
           YLH      +++ +L    +L +++   ++ DF  +  +      +      G     AP
Sbjct: 156 YLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTL-----CGTPEALAP 207

Query: 247 EYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
           E      +N+ +D +    ++ E+  G 
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAAGY 235

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 5e-09
 Identities = 25/172 (14%), Positives = 57/172 (33%), Gaps = 8/172 (4%)

Query: 103 NESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAP 162
               S+   K +   +     M H++++ L+             ++           G  
Sbjct: 53  RPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKL 112

Query: 163 QPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSES 222
             H E L       +   +   L Y+H      I+  +L    +  NE+   K+ DF  +
Sbjct: 113 MKH-EKLGEDRIQFLVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLA 168

Query: 223 ISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
                  T  +       W  +         + + +D+++   ++ E++TG+
Sbjct: 169 RQADSEMTGYVVTR----WYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGK 216

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.9 bits (128), Expect = 8e-09
 Identities = 22/164 (13%), Positives = 53/164 (32%), Gaps = 3/164 (1%)

Query: 112 KFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLL 171
           + +  +      M   HILKL+          +           + +    +     + L
Sbjct: 65  RVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPL 124

Query: 172 KHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN-VAKLFDFSESISIPEGET 230
            +  +++  +   L Y+H      I+  ++    +L    +    L     +        
Sbjct: 125 IYVKQISKQLLLGLDYMH--RRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWY 182

Query: 231 HIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
                +      Y +PE   G  +    D+++ + ++ EL+TG 
Sbjct: 183 DEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGD 226

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 3e-06
 Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 8/172 (4%)

Query: 103 NESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYTTLRDRIFGAP 162
               S    K +   +     M H++++ L+             +    T L        
Sbjct: 53  RPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADL-NN 111

Query: 163 QPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSES 222
               + L   H   +   I   L Y+H      I+  +L    +  NE+   K+ DF  +
Sbjct: 112 IVKCQKLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLA 168

Query: 223 ISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
                     +T      W  +         +N+ +D+++   ++ ELLTG+
Sbjct: 169 RHT----DDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 216

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 4e-06
 Identities = 31/213 (14%), Positives = 72/213 (33%), Gaps = 23/213 (10%)

Query: 71  NNYDERKFIKQDSTYKLYKGFWQE--RLISVMKYNESY-SDSACKFSINNIVYAAQMDHK 127
             Y   K I   +   +   +     R +++ K +  + + +  K +   +V    ++HK
Sbjct: 17  KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHK 76

Query: 128 HILKLIGCCL------ETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGI 181
           +I+ L+          E     LV E  +    +                +    +   +
Sbjct: 77  NIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDH--------ERMSYLLYQM 128

Query: 182 AHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAW 241
              + +LH      I+  +L    I+   +   K+ DF  + +                 
Sbjct: 129 LCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM---MTPYVVTR 182

Query: 242 TYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ 274
            Y APE   G  + E +D+++   ++ E++  +
Sbjct: 183 YYRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 215

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	338
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.92
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	98.81
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	98.18
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	97.96
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	97.27
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	97.09
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	96.88

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-55  Score=385.20  Aligned_cols=209  Identities=23%  Similarity=0.289  Sum_probs=175.8

Q ss_pred             HHHHhhcCCCcCCccccCCCceEEEEEECCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcce
Q 038823           65 ELEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        65 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      +|+...++|.+.+.||+|+||+||+|++++ .||||++.... +....+.|.+|+.+|++++|||||++++++.+ +.++
T Consensus         2 dwei~~~~~~~~~~lG~G~fg~Vy~~~~~~-~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~-~~~~   79 (276)
T d1uwha_           2 DWEIPDGQITVGQRIGSGSFGTVYKGKWHG-DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA-PQLA   79 (276)
T ss_dssp             CCBCCTTCCCCCSEEEECSSCEEEEEESSS-EEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCE
T ss_pred             CcccccccEEEEEEEeeCCCcEEEEEEECC-EEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEec-cEEE
Confidence            355667889999999999999999998754 59999987543 45567889999999999999999999999865 5689


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      +||||+++|+|.+++.....    .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+|+
T Consensus        80 lv~Ey~~~g~L~~~l~~~~~----~~~~~~~~~i~~qi~~gl~yLH---~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~  152 (276)
T d1uwha_          80 IVTQWCEGSSLYHHLHIIET----KFEMIKLIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLAT  152 (276)
T ss_dssp             EEEECCCEEEHHHHHHTSCC----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTSSEEECCCCCSC
T ss_pred             EEEecCCCCCHHHHHhhccC----CCCHHHHHHHHHHHHHHHHHHh---cCCEeccccCHHHEEEcCCCCEEEcccccee
Confidence            99999999999999976553    6999999999999999999999   8999999999999999999999999999998


Q ss_pred             ccCCCCceeeeecccccCCccccccccc---CCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYKRG---GVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ...............||+.|+|||++.+   +.++.++|||||||++|||+||+.||.....
T Consensus       153 ~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~  214 (276)
T d1uwha_         153 VKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINN  214 (276)
T ss_dssp             C------------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCC
T ss_pred             eccccCCcccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCCh
Confidence            7765444333356679999999999864   3589999999999999999999999986543

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-55  Score=383.82  Aligned_cols=204  Identities=19%  Similarity=0.233  Sum_probs=178.4

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      .++|++.+.||+|+||+||+|.+  +++.||+|++.........+.+.+|+.+|++++||||+++++++.+++..|+|||
T Consensus         4 ~~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmE   83 (271)
T d1nvra_           4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   83 (271)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CcceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEe
Confidence            35789999999999999999998  7899999999765444445678999999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |+++|+|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||+++++.+||+|||+|+....
T Consensus        84 y~~gg~L~~~l~~~~-----~l~e~~~~~i~~qi~~al~ylH---~~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~  155 (271)
T d1nvra_          84 YCSGGELFDRIEPDI-----GMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRY  155 (271)
T ss_dssp             CCTTEEGGGGSBTTT-----BCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECEE
T ss_pred             ccCCCcHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHH---HcCCccCcccHHHEEECCCCCEEEccchhheeecc
Confidence            999999999997654     6999999999999999999999   89999999999999999999999999999987755


Q ss_pred             CCceeeeecccccCCcccccccccCCC-CccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGVF-NEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ...........||+.|+|||++.+..+ +.++|||||||++|||+||++||....
T Consensus       156 ~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~  210 (271)
T d1nvra_         156 NNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPS  210 (271)
T ss_dssp             TTEECCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSS
T ss_pred             CCccccccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCC
Confidence            444333356789999999999988775 678999999999999999999997544

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8e-54  Score=378.70  Aligned_cols=198  Identities=18%  Similarity=0.245  Sum_probs=178.8

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      ++|+..+.||+|+||+||+|.+  +|+.||+|++.... ....+.+.+|+.++++++|||||++++++.+.+.+|+||||
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~-~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy   98 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQ-QPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY   98 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGG-CSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEeccc-ChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEe
Confidence            4699999999999999999998  79999999987552 22347789999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      +++|+|.+++.+.      .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+|+.....
T Consensus        99 ~~gg~L~~~~~~~------~l~~~~~~~i~~qi~~aL~yLH---~~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~  169 (293)
T d1yhwa1          99 LAGGSLTDVVTET------CMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE  169 (293)
T ss_dssp             CTTCBHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCST
T ss_pred             cCCCcHHHHhhcc------CCCHHHHHHHHHHHHHHHHHHH---HCCCcccCCcHHHeEECCCCcEeeccchhheeeccc
Confidence            9999999988654      5999999999999999999999   899999999999999999999999999999877544


Q ss_pred             CceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ...  .....||+.|+|||++.+..++.++|||||||++|+|+||+.||...
T Consensus       170 ~~~--~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~  219 (293)
T d1yhwa1         170 QSK--RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNE  219 (293)
T ss_dssp             TCC--BCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             ccc--ccccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCC
Confidence            322  15567999999999999999999999999999999999999999753

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-54  Score=374.31  Aligned_cols=198  Identities=16%  Similarity=0.283  Sum_probs=178.6

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++|++.+.||+|+||+||+|.+  +++.||+|++.+..  .....+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus         6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivm   85 (263)
T d2j4za1           6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLIL   85 (263)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEEE
Confidence            4688899999999999999999  78899999986432  1223467889999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++|+|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+|....
T Consensus        86 Ey~~~g~L~~~l~~~~-----~l~e~~~~~i~~qi~~al~~lH---~~~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~  157 (263)
T d2j4za1          86 EYAPLGTVYRELQKLS-----KFDEQRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP  157 (263)
T ss_dssp             ECCTTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCSCSCCC
T ss_pred             eecCCCcHHHHHhhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeeeeeeccccceecCCCCEeecccceeeecC
Confidence            9999999999998654     6999999999999999999999   8999999999999999999999999999998765


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ....    ....||+.|+|||++.+..++.++|||||||++|||+||+.||...
T Consensus       158 ~~~~----~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~  207 (263)
T d2j4za1         158 SSRR----TTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEAN  207 (263)
T ss_dssp             CCCC----EETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             CCcc----cccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCC
Confidence            4432    4557999999999999999999999999999999999999999753

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.8e-54  Score=380.40  Aligned_cols=208  Identities=19%  Similarity=0.267  Sum_probs=184.2

Q ss_pred             HHHHHHhhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCC
Q 038823           63 AKELEIATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETP  140 (338)
Q Consensus        63 ~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~  140 (338)
                      +++|+...++|++.+.||+|+||+||+|.+  +++.||||++.....  ..+.+.+|+.+|++++|||||+++++|.+++
T Consensus         9 ~~~wei~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~--~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~   86 (287)
T d1opja_           9 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM--EVEEFLKEAAVMKEIKHPNLVQLLGVCTREP   86 (287)
T ss_dssp             CCTTBCCGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCS--CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             CcccEecHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccc--hHHHHHHHHHHHHhCCCCCEecCCccEeeCC
Confidence            346777788999999999999999999999  688999999876532  3467999999999999999999999999999


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                      ..++||||+++|+|.+++.....   ..+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||
T Consensus        87 ~~~iv~E~~~~g~l~~~l~~~~~---~~~~~~~~~~i~~qi~~gL~yLH---~~~iiHrDlKp~NILl~~~~~~Kl~DFG  160 (287)
T d1opja_          87 PFYIITEFMTYGNLLDYLRECNR---QEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFG  160 (287)
T ss_dssp             SCEEEEECCTTCBHHHHHHHSCT---TTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCC
T ss_pred             eeEEEeecccCcchHHHhhhccc---cchHHHHHHHHHHHHHHHHHHHH---HCCcccCccccCeEEECCCCcEEEcccc
Confidence            99999999999999999976543   36999999999999999999999   8999999999999999999999999999


Q ss_pred             CCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          221 ESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      +|+.......... ....||+.|+|||++.++.++.++|||||||++|||+||..||..
T Consensus       161 ~a~~~~~~~~~~~-~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~  218 (287)
T d1opja_         161 LSRLMTGDTYTAH-AGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP  218 (287)
T ss_dssp             CTTTCCSSSSEEE-TTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             ceeecCCCCceee-ccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCC
Confidence            9988765443322 455689999999999999999999999999999999997776643

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.6e-54  Score=383.61  Aligned_cols=204  Identities=17%  Similarity=0.234  Sum_probs=167.8

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CC---eEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QE---RLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~---~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      ++|++.++||+|+||+||+|.+  ++   ..||||.+.........+.|.+|+.+|++++|||||+++|+|.+.+..++|
T Consensus        26 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~iv  105 (299)
T d1jpaa_          26 SCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMII  105 (299)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred             hhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEE
Confidence            3456678999999999999998  33   258999988776777778899999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||+++|+|.+++.....    .+++.+++.++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+|+..
T Consensus       106 ~Ey~~~g~L~~~~~~~~~----~l~~~~~~~i~~qia~gl~yLH---~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~  178 (299)
T d1jpaa_         106 TEFMENGSLDSFLRQNDG----QFTVIQLVGMLRGIAAGMKYLA---DMNYVHRDLAARNILVNSNLVCKVSDFGLSRFL  178 (299)
T ss_dssp             EECCTTEEHHHHHHTTTT----CSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC------
T ss_pred             EEecCCCcceeeeccccC----CCCHHHHHHHHHHHHHHHHHHh---hCCCccCccccceEEECCCCcEEECCcccceEc
Confidence            999999999998887653    6999999999999999999999   899999999999999999999999999999876


Q ss_pred             CCCCcee---eeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          226 PEGETHI---ITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       226 ~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      .......   ......||+.|+|||.+.++.++.++|||||||++|||+| |+.||....
T Consensus       179 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~  238 (299)
T d1jpaa_         179 EDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMT  238 (299)
T ss_dssp             -----------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred             cCCCCcceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCC
Confidence            5443221   1123457899999999999999999999999999999998 899997543

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-54  Score=375.83  Aligned_cols=200  Identities=18%  Similarity=0.259  Sum_probs=166.9

Q ss_pred             hcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      .++|+..+.||+|+||+||+|.+ +++.||||++.....  ..+.+.+|++++++++|||||+++|+|.+.+..++||||
T Consensus         4 p~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~--~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~   81 (263)
T d1sm2a_           4 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM--SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEF   81 (263)
T ss_dssp             CSCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSSS--CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred             hHHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCcC--cHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEe
Confidence            45788899999999999999999 788899999976532  236799999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      +++|+|.+++.....    .+++..++.++.||+.||.|||   +.+|+||||||+|||+++++.+||+|||+|+.....
T Consensus        82 ~~~g~L~~~l~~~~~----~~~~~~~~~i~~qia~gl~~lH---~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~  154 (263)
T d1sm2a_          82 MEHGCLSDYLRTQRG----LFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDD  154 (263)
T ss_dssp             CTTCBHHHHHHTTTT----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCTTCSGGGEEECGGGCEEECSCC--------
T ss_pred             cCCCcHHHHhhcccc----CCCHHHHHHHHHHHHHHHHhhh---ccceeecccchhheeecCCCCeEecccchheeccCC
Confidence            999999999877653    6899999999999999999999   899999999999999999999999999999877554


Q ss_pred             CceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhC-CCCcCC
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTG-QSTRDL  279 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG-~~p~~~  279 (338)
                      ..... ....||+.|+|||++.+..++.++|||||||++|||+|| ++||..
T Consensus       155 ~~~~~-~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~  205 (263)
T d1sm2a_         155 QYTSS-TGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYEN  205 (263)
T ss_dssp             -----------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCS
T ss_pred             Cceee-cceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCC
Confidence            33322 445789999999999999999999999999999999995 555543

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.5e-55  Score=391.39  Aligned_cols=201  Identities=15%  Similarity=0.181  Sum_probs=181.0

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ..++|++.+.||+|+||+||+|.+  +|+.||+|++.........+.+.+|+.+|++++|||||+++++|.+.+..++||
T Consensus         4 ~~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVm   83 (322)
T d1s9ja_           4 KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICM   83 (322)
T ss_dssp             CGGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            467899999999999999999998  789999999986655555678999999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPR-PIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~-~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      ||+++|+|.+++.+.+     .+++..+..++.|++.||.|||   ++ +|+||||||+|||++.++.+||+|||+|+..
T Consensus        84 Ey~~gg~L~~~l~~~~-----~l~~~~~~~~~~qil~aL~yLH---~~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~  155 (322)
T d1s9ja_          84 EHMDGGSLDQVLKKAG-----RIPEQILGKVSIAVIKGLTYLR---EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL  155 (322)
T ss_dssp             ECCTTEEHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---HHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHH
T ss_pred             EcCCCCcHHHHHhhcC-----CCCHHHHHHHHHHHHHHHHHHH---HhCCEEccccCHHHeeECCCCCEEEeeCCCcccc
Confidence            9999999999998754     5999999999999999999999   64 8999999999999999999999999999876


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      .....    ...+||+.|+|||++.+..++.++||||+||++|||+||+.||....
T Consensus       156 ~~~~~----~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~  207 (322)
T d1s9ja_         156 IDSMA----NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPD  207 (322)
T ss_dssp             HHHTC-------CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCC
T ss_pred             CCCcc----ccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence            43221    45679999999999999999999999999999999999999997643

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-54  Score=378.30  Aligned_cols=202  Identities=16%  Similarity=0.177  Sum_probs=177.4

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++|++.+.||+|+||+||+|.+  +++.||+|++.+..  .....+.+.+|+.+|++++||||+++++++.+.+..|+||
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivm   87 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL   87 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEE
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEE
Confidence            5799999999999999999998  78899999986432  2233567899999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++|+|.+++...+     .+++..+..++.|++.||.|||   +.+|+||||||+|||+++++.+||+|||+|+...
T Consensus        88 Ey~~gg~L~~~~~~~~-----~l~e~~~~~~~~qi~~al~ylH---~~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~  159 (288)
T d1uu3a_          88 SYAKNGELLKYIRKIG-----SFDETCTRFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLS  159 (288)
T ss_dssp             CCCTTEEHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred             EccCCCCHHHhhhccC-----CCCHHHHHHHHHHHHHHHHhhc---cccEEcCcCCccccccCCCceEEecccccceecc
Confidence            9999999999987764     6999999999999999999999   8999999999999999999999999999998876


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ............||+.|+|||++.+..++.++|||||||++|||+||+.||...
T Consensus       160 ~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~  213 (288)
T d1uu3a_         160 PESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAG  213 (288)
T ss_dssp             ----------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cCCcccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCc
Confidence            544333335567999999999999999999999999999999999999999853

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-53  Score=376.05  Aligned_cols=205  Identities=17%  Similarity=0.263  Sum_probs=178.7

Q ss_pred             hcCCCcCCc-cccCCCceEEEEEE----CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           70 TNNYDERKF-IKQDSTYKLYKGFW----QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        70 ~~~~~~~~~-lg~G~~g~Vy~~~~----~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      .++|...+. ||+|+||+||+|.+    ++..||||.++........+.|.+|+++|++++|||||+++|++.+ +.+++
T Consensus         7 ~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~-~~~~l   85 (285)
T d1u59a_           7 RDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALML   85 (285)
T ss_dssp             GGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEE
T ss_pred             ccCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc-CeEEE
Confidence            355666664 99999999999987    3457999999877666677889999999999999999999999875 46899


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ||||+++|+|.+++.....    .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+|+.
T Consensus        86 vmE~~~~g~L~~~l~~~~~----~l~~~~~~~i~~qi~~gL~ylH---~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~  158 (285)
T d1u59a_          86 VMEMAGGGPLHKFLVGKRE----EIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLAARNVLLVNRHYAKISDFGLSKA  158 (285)
T ss_dssp             EEECCTTEEHHHHHTTCTT----TSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred             EEEeCCCCcHHHHhhcccc----CCCHHHHHHHHHHHHHHHHHHH---hCCeecCcCchhheeeccCCceeeccchhhhc
Confidence            9999999999999866543    6999999999999999999999   89999999999999999999999999999988


Q ss_pred             cCCCCcee-eeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccC
Q 038823          225 IPEGETHI-ITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRT  282 (338)
Q Consensus       225 ~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~  282 (338)
                      ........ ......||+.|+|||++.++.++.++|||||||++|||+| |+.||.....
T Consensus       159 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~  218 (285)
T d1u59a_         159 LGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG  218 (285)
T ss_dssp             CTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCT
T ss_pred             ccccccccccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCCH
Confidence            76544332 2244568999999999999999999999999999999998 9999986543

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.5e-54  Score=377.70  Aligned_cols=202  Identities=21%  Similarity=0.211  Sum_probs=177.5

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      +.|++.+.||+|+||+||+|.+  ++..||+|++... .....+.+.+|+++|++++|||||++++++.+.+..++||||
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~-~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy   90 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTK-SEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEF   90 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-SSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcC-CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEec
Confidence            4688899999999999999999  7889999999765 444557789999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      +++|+|.+++.+...    ++++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+|+.....
T Consensus        91 ~~~g~L~~~~~~~~~----~l~e~~~~~i~~qi~~gL~ylH---~~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~  163 (288)
T d2jfla1          91 CAGGAVDAVMLELER----PLTESQIQVVCKQTLDALNYLH---DNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRT  163 (288)
T ss_dssp             CTTEEHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECHHH
T ss_pred             CCCCcHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHH---HCCEEEeecChhheeECCCCCEEEEechhhhccCCC
Confidence            999999999876443    6999999999999999999999   899999999999999999999999999999765432


Q ss_pred             CceeeeecccccCCcccccccc-----cCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          229 ETHIITRSRFGAWTYSAPEYKR-----GGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ..  ......||+.|+|||++.     +..++.++|||||||++|||+||+.||...+.
T Consensus       164 ~~--~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~  220 (288)
T d2jfla1         164 IQ--RRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNP  220 (288)
T ss_dssp             HH--HHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCG
T ss_pred             cc--cccccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCH
Confidence            11  113567999999999984     44589999999999999999999999976543

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-54  Score=375.27  Aligned_cols=244  Identities=16%  Similarity=0.193  Sum_probs=183.4

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeec--CCcceEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLE--TPIPILV  145 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~~lv  145 (338)
                      ++|++.+.||+|+||+||+|..  +|+.||+|.+.... .....+.+.+|++++++++|||||++++++.+  .+.+|+|
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~iv   83 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIV   83 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEE
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEE
Confidence            5799999999999999999998  78899999997654 44556778999999999999999999999865  4568999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC--CCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGF--PRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~--~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      |||+++|+|.+++...... ...+++..++.++.|++.||.|||+..  ..+|+||||||+|||++.++.+||+|||+|+
T Consensus        84 mEy~~~g~L~~~i~~~~~~-~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~  162 (269)
T d2java1          84 MEYCEGGDLASVITKGTKE-RQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLAR  162 (269)
T ss_dssp             EECCTTEEHHHHHHHHHHH-TCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHH
T ss_pred             EecCCCCcHHHHHHhcccc-CCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeecccee
Confidence            9999999999998643110 026999999999999999999999321  1349999999999999999999999999998


Q ss_pred             ccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHHHHHHHhcCccc
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQNNRFT  303 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~  303 (338)
                      ........  .....||+.|+|||++.+..++.++|||||||++|||+||+.||.....    ..+.    ..+..+...
T Consensus       163 ~~~~~~~~--~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~----~~~~----~~i~~~~~~  232 (269)
T d2java1         163 ILNHDTSF--AKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQ----KELA----GKIREGKFR  232 (269)
T ss_dssp             HC-------------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH----HHHH----HHHHHTCCC
T ss_pred             ecccCCCc--cccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCH----HHHH----HHHHcCCCC
Confidence            87544322  2456799999999999999999999999999999999999999975432    1222    222222222


Q ss_pred             cccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          304 EIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       304 ~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                      .+     ...        ...++.+++.+||+.||
T Consensus       233 ~~-----~~~--------~s~~l~~li~~~L~~dp  254 (269)
T d2java1         233 RI-----PYR--------YSDELNEIITRMLNLKD  254 (269)
T ss_dssp             CC-----CTT--------SCHHHHHHHHHHTCSSG
T ss_pred             CC-----Ccc--------cCHHHHHHHHHHcCCCh
Confidence            11     111        12358889999999987

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-53  Score=374.07  Aligned_cols=204  Identities=19%  Similarity=0.253  Sum_probs=177.6

Q ss_pred             HHHHhhcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcce
Q 038823           65 ELEIATNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        65 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      +|+...++|++.+.||+|+||.||+|.+ ++..||||++.....  ..+.+.+|+.++++++|||||+++|++.+ +..+
T Consensus         7 ~wei~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~--~~~~~~~E~~~l~~l~HpnIv~~~g~~~~-~~~~   83 (272)
T d1qpca_           7 EWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM--SPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIY   83 (272)
T ss_dssp             TTBCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS--CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCE
T ss_pred             CeecCHHHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCcC--CHHHHHHHHHHHHhCCCCCEeEEEeeecc-CCeE
Confidence            5666778899999999999999999999 678899999976432  33679999999999999999999998865 5679


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      +||||+++|+|.+++.....   ..+++..+++++.||+.||.|||   +.+|+||||||+|||+++++.+||+|||+|+
T Consensus        84 iv~Ey~~~g~L~~~~~~~~~---~~l~~~~~~~i~~qi~~gl~~lH---~~~ivHrDiKp~NIll~~~~~~Kl~DFGla~  157 (272)
T d1qpca_          84 IITEYMENGSLVDFLKTPSG---IKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLAR  157 (272)
T ss_dssp             EEEECCTTCBHHHHTTSHHH---HTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             EEEEeCCCCcHHHHHhhcCC---CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCccchhheeeecccceeeccccceE
Confidence            99999999999998765432   25899999999999999999999   8999999999999999999999999999999


Q ss_pred             ccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcC
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRD  278 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~  278 (338)
                      .......... ....||+.|+|||++.++.++.++|||||||++|||+||..|+.
T Consensus       158 ~~~~~~~~~~-~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~  211 (272)
T d1qpca_         158 LIEDNEYTAR-EGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPY  211 (272)
T ss_dssp             ECSSSCEECC-TTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSS
T ss_pred             EccCCccccc-cccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCC
Confidence            8765443322 45678999999999998999999999999999999999655543

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-53  Score=367.03  Aligned_cols=238  Identities=16%  Similarity=0.226  Sum_probs=198.2

Q ss_pred             hcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      .++|++.+.||+|+||+||+|++ +++.||||+++....  ..+.+.+|+.++++++||||++++|+|.+++.+++||||
T Consensus         3 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~--~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey   80 (258)
T d1k2pa_           3 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM--SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEY   80 (258)
T ss_dssp             CCCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSSS--CHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEEC
T ss_pred             hHHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCcC--CHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEc
Confidence            46899999999999999999999 778999999986532  236799999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      +++|+|.+++.....    .+++..+.+++.|+++||.|||   +.+|+||||||+||++++++.+||+|||+++.....
T Consensus        81 ~~~g~l~~~~~~~~~----~~~~~~~~~i~~qi~~gl~~LH---~~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~  153 (258)
T d1k2pa_          81 MANGCLLNYLREMRH----RFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD  153 (258)
T ss_dssp             CTTEEHHHHHHSGGG----CCCHHHHHHHHHHHHHHHHHHH---HTTBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSS
T ss_pred             cCCCcHHHhhhcccc----CCcHHHHHHHHHHHHHHHHHHh---hcCcccccccceeEEEcCCCcEEECcchhheeccCC
Confidence            999999999876654    6899999999999999999999   899999999999999999999999999999876654


Q ss_pred             CceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccCCcccccHHHHHHHHHhcCccccccc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEIAD  307 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d  307 (338)
                      ..... ....||+.|+|||.+.+..++.++|||||||++|||+| |+.||.....    ..+..    .+.++..  +..
T Consensus       154 ~~~~~-~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~----~~~~~----~i~~~~~--~~~  222 (258)
T d1k2pa_         154 EYTSS-VGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTN----SETAE----HIAQGLR--LYR  222 (258)
T ss_dssp             SCCCC-CCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCH----HHHHH----HHHTTCC--CCC
T ss_pred             Cceee-cccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCH----HHHHH----HHHhCCC--CCC
Confidence            33322 45668999999999999999999999999999999998 8999986543    22222    2222211  111


Q ss_pred             cccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          308 PIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       308 ~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                      |.           .+..++.+++.+||+.||
T Consensus       223 p~-----------~~~~~l~~li~~cl~~dP  242 (258)
T d1k2pa_         223 PH-----------LASEKVYTIMYSCWHEKA  242 (258)
T ss_dssp             CT-----------TCCHHHHHHHHHTTCSSG
T ss_pred             cc-----------cccHHHHHHHHHHccCCH
Confidence            11           122468899999999988

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-52  Score=364.82  Aligned_cols=194  Identities=19%  Similarity=0.195  Sum_probs=169.4

Q ss_pred             CcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeec----CCcceEEE
Q 038823           74 DERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLE----TPIPILVF  146 (338)
Q Consensus        74 ~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~~lv~  146 (338)
                      ...+.||+|+||+||+|.+  ++..||+|++.... .....+.+.+|+++|++++|||||++++++.+    ...+++||
T Consensus        12 ~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivm   91 (270)
T d1t4ha_          12 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT   91 (270)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEE
Confidence            4556799999999999999  68899999987543 45556789999999999999999999999864    34579999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--eeecCCCCCceeeC-CCCceEEecCCCCc
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRP--IVFGNLISLCILFN-EENVAKLFDFSESI  223 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--iiH~dik~~Nill~-~~~~~kl~Dfg~a~  223 (338)
                      ||+++|+|.+++.+..     .+++..+..++.||+.||.|||   +.+  |+||||||+|||++ +++.+||+|||+|+
T Consensus        92 E~~~~g~L~~~l~~~~-----~~~~~~~~~~~~qi~~gl~yLH---~~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~  163 (270)
T d1t4ha_          92 ELMTSGTLKTYLKRFK-----VMKIKVLRSWCRQILKGLQFLH---TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLAT  163 (270)
T ss_dssp             ECCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---TSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGG
T ss_pred             eCCCCCcHHHHHhccc-----cccHHHHHHHHHHHHHHHHHHH---HCCCCEEeCCcChhhceeeCCCCCEEEeecCcce
Confidence            9999999999997754     6999999999999999999999   777  99999999999996 57899999999998


Q ss_pred             ccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .......    ....||+.|+|||++.+ .++.++|||||||++|||+||+.||...
T Consensus       164 ~~~~~~~----~~~~GT~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~g~~Pf~~~  215 (270)
T d1t4ha_         164 LKRASFA----KAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSEC  215 (270)
T ss_dssp             GCCTTSB----EESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             eccCCcc----CCcccCccccCHHHhCC-CCCCcCchhhHHHHHHHHHHCCCCCCCc
Confidence            6544322    45679999999998865 5999999999999999999999999754

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=7.4e-53  Score=375.29  Aligned_cols=201  Identities=18%  Similarity=0.175  Sum_probs=162.9

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ..+.|++.+.||+|+||+||+|.+  +++.||+|.+...........+.+|+.+|++++||||+++++++.+++..|+||
T Consensus         7 i~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvm   86 (307)
T d1a06a_           7 IRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIM   86 (307)
T ss_dssp             GGGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            346699999999999999999998  788999999976544444467889999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeC---CCCceEEecCCCCc
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFN---EENVAKLFDFSESI  223 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~---~~~~~kl~Dfg~a~  223 (338)
                      ||++||+|.+++...+     .+++..+..++.||+.||.|||   +.+|+||||||+||++.   +++.+||+|||+|+
T Consensus        87 E~~~gg~L~~~l~~~~-----~l~e~~~~~~~~qi~~al~ylH---~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~  158 (307)
T d1a06a_          87 QLVSGGELFDRIVEKG-----FYTERDASRLIFQVLDAVKYLH---DLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSK  158 (307)
T ss_dssp             CCCCSCBHHHHHHTCS-----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSTTCCEEECCC----
T ss_pred             eccCCCcHHHhhhccc-----CCCHHHHHHHHHHHHHHHHhhh---hceeeeEEecccceeecccCCCceEEEeccceeE
Confidence            9999999999997754     6999999999999999999999   89999999999999994   57899999999998


Q ss_pred             ccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ........   ....||+.|+|||++.+..++.++|||||||++|||+||+.||...
T Consensus       159 ~~~~~~~~---~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~  212 (307)
T d1a06a_         159 MEDPGSVL---STACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDE  212 (307)
T ss_dssp             -----------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             EccCCCee---eeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCC
Confidence            76544322   4567999999999999999999999999999999999999999753

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=8.3e-53  Score=375.10  Aligned_cols=195  Identities=22%  Similarity=0.276  Sum_probs=174.1

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      .|+..+.||+|+||+||+|.+  +++.||||++....  .....+.+.+|+.+|++++|||||++++++.+.+..|+|||
T Consensus        16 ~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~E   95 (309)
T d1u5ra_          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVME   95 (309)
T ss_dssp             HEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEEE
Confidence            488899999999999999998  78999999987553  23345678999999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      ||++|+|..++....     ++++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+|.....
T Consensus        96 ~~~~g~l~~~~~~~~-----~l~e~~~~~i~~qi~~aL~yLH---~~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~  167 (309)
T d1u5ra_          96 YCLGSASDLLEVHKK-----PLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP  167 (309)
T ss_dssp             CCSEEHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS
T ss_pred             ecCCCchHHHHHhCC-----CCCHHHHHHHHHHHHHHHHHHH---hCCEeccCCCcceEEECCCCCEEEeecccccccCC
Confidence            999999987766543     6999999999999999999999   89999999999999999999999999999987544


Q ss_pred             CCceeeeecccccCCccccccccc---CCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRG---GVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .      ....||+.|+|||++.+   +.++.++|||||||++|||++|+.||...
T Consensus       168 ~------~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~  217 (309)
T d1u5ra_         168 A------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM  217 (309)
T ss_dssp             B------CCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             C------CccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCC
Confidence            3      44579999999999864   45899999999999999999999999754

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-53  Score=382.48  Aligned_cols=214  Identities=20%  Similarity=0.289  Sum_probs=181.4

Q ss_pred             HHHhhcCCCcCCccccCCCceEEEEEE--CC-----eEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeeee
Q 038823           66 LEIATNNYDERKFIKQDSTYKLYKGFW--QE-----RLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCCL  137 (338)
Q Consensus        66 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~~-----~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~  137 (338)
                      |+...++|++.+.||+|+||+||+|++  .+     ..||+|.+...........+.+|+.+|.++ +|||||++++++.
T Consensus        32 wei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~  111 (325)
T d1rjba_          32 WEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACT  111 (325)
T ss_dssp             GBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             ccCCHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEe
Confidence            455668899999999999999999998  22     369999987665555557889999999998 8999999999999


Q ss_pred             cCCcceEEEeecCCCCHHHhhhcCCCC------------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeec
Q 038823          138 ETPIPILVFEYGEYTTLRDRIFGAPQP------------------HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFG  199 (338)
Q Consensus       138 ~~~~~~lv~e~~~~gsL~~~l~~~~~~------------------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~  199 (338)
                      +.+..++||||+++|+|.+++......                  ....+++..++.++.||+.||.|||   +.+|+||
T Consensus       112 ~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH---~~~IiHR  188 (325)
T d1rjba_         112 LSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHR  188 (325)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH---HTTEEET
T ss_pred             eCCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCeeec
Confidence            999999999999999999999765321                  1125899999999999999999999   8999999


Q ss_pred             CCCCCceeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcC
Q 038823          200 NLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRD  278 (338)
Q Consensus       200 dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~  278 (338)
                      ||||+|||++.++.+||+|||+|+...............||+.|+|||.+.++.++.++|||||||++|||+| |+.||.
T Consensus       189 DlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~  268 (325)
T d1rjba_         189 DLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYP  268 (325)
T ss_dssp             TCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSST
T ss_pred             cCchhccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCC
Confidence            9999999999999999999999987766555444456678999999999999999999999999999999998 899998


Q ss_pred             CccC
Q 038823          279 LLRT  282 (338)
Q Consensus       279 ~~~~  282 (338)
                      ....
T Consensus       269 ~~~~  272 (325)
T d1rjba_         269 GIPV  272 (325)
T ss_dssp             TCCC
T ss_pred             CCCH
Confidence            6543

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-52  Score=366.86  Aligned_cols=202  Identities=20%  Similarity=0.238  Sum_probs=169.9

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CC----eEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcce
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QE----RLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~----~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      ++.|+..++||+|+||.||+|.+  ++    ..||||++...........|.+|+.++++++|||||+++|++.+.+..+
T Consensus         6 ~~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~   85 (283)
T d1mqba_           6 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMM   85 (283)
T ss_dssp             TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred             HHHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceE
Confidence            45688899999999999999998  22    4699999987766666678999999999999999999999999999999


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      +||||+.++++.+++.....    .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+|+
T Consensus        86 ~v~e~~~~~~l~~~~~~~~~----~~~~~~~~~i~~~i~~gl~~lH---~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~  158 (283)
T d1mqba_          86 IITEYMENGALDKFLREKDG----EFSVLQLVGMLRGIAAGMKYLA---NMNYVHRDLAARNILVNSNLVCKVSDFGLSR  158 (283)
T ss_dssp             EEEECCTTEEHHHHHHHTTT----CSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCCCC--
T ss_pred             EEEEecccCcchhhhhcccc----cccHHHHHHHHHHHHHhhhhcc---ccccccCccccceEEECCCCeEEEcccchhh
Confidence            99999999999998876654    7999999999999999999999   8999999999999999999999999999998


Q ss_pred             ccCCCCce-eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcC
Q 038823          224 SIPEGETH-IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRD  278 (338)
Q Consensus       224 ~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~  278 (338)
                      ........ .......||+.|+|||++.++.++.++|||||||++|||+||..|+.
T Consensus       159 ~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~  214 (283)
T d1mqba_         159 VLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPY  214 (283)
T ss_dssp             ---------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred             cccCCCccceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCcc
Confidence            76543322 12244568999999999999999999999999999999999766654

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=8.8e-52  Score=374.47  Aligned_cols=199  Identities=15%  Similarity=0.164  Sum_probs=180.0

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      ++|.+.+.||+|+||.||+|.+  +|+.||+|++... .....+.+.+|+.+|++++|||||++++++.+.+.+++||||
T Consensus        26 ~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~-~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~  104 (350)
T d1koaa2          26 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTP-HESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF  104 (350)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCC-SHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEccc-chhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEc
Confidence            5799999999999999999998  7999999999765 444567889999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC--CCceEEecCCCCcccC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE--ENVAKLFDFSESISIP  226 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~--~~~~kl~Dfg~a~~~~  226 (338)
                      |+||+|.+++.....    .+++..+..++.||+.||.|||   +.+|+||||||+|||++.  ++.+||+|||+|+...
T Consensus       105 ~~gg~L~~~l~~~~~----~l~e~~~~~i~~qi~~aL~ylH---~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~  177 (350)
T d1koaa2         105 MSGGELFEKVADEHN----KMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLD  177 (350)
T ss_dssp             CCSCBHHHHHTCTTS----CBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECC
T ss_pred             CCCCCHHHHHHhhcC----CCCHHHHHHHHHHHHHHHHHHH---hcCCeeeeechhHeeeccCCCCeEEEeecchheecc
Confidence            999999999966543    6999999999999999999999   899999999999999964  5789999999998876


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      .....   ....||+.|+|||++.+..++.++|||||||++|||+||+.||...
T Consensus       178 ~~~~~---~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~  228 (350)
T d1koaa2         178 PKQSV---KVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGE  228 (350)
T ss_dssp             TTSCE---EEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccccc---ceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCC
Confidence            54433   4567999999999999999999999999999999999999999753

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-52  Score=368.51  Aligned_cols=196  Identities=19%  Similarity=0.252  Sum_probs=168.1

Q ss_pred             CccccCCCceEEEEEE----CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeecCC
Q 038823           77 KFIKQDSTYKLYKGFW----QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEY  151 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~----~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~  151 (338)
                      +.||+|+||+||+|.+    .++.||||++.... +....+.+.+|+.+|++++|||||+++|+|.+ +..++||||+++
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~-~~~~lvmE~~~~   91 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL   91 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEecc-CCEEEEEEcCCC
Confidence            4699999999999987    34679999997543 34445789999999999999999999999965 467899999999


Q ss_pred             CCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCCce
Q 038823          152 TTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGETH  231 (338)
Q Consensus       152 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~  231 (338)
                      |+|.+++....     .+++..++.++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+|+........
T Consensus        92 g~L~~~l~~~~-----~l~~~~~~~i~~qi~~gl~ylH---~~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~  163 (277)
T d1xbba_          92 GPLNKYLQQNR-----HVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY  163 (277)
T ss_dssp             EEHHHHHHHCT-----TCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSE
T ss_pred             CcHHHHHhhcc-----CCCHHHHHHHHHHHHHHHhhHH---hCCcccCCCcchhhcccccCcccccchhhhhhccccccc
Confidence            99999998764     6999999999999999999999   899999999999999999999999999999877654433


Q ss_pred             e-eeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          232 I-ITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       232 ~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      . ......||+.|+|||.+.+..++.++|||||||++|||+| |+.||....
T Consensus       164 ~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~  215 (277)
T d1xbba_         164 YKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK  215 (277)
T ss_dssp             EEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCC
T ss_pred             cccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCC
Confidence            2 2244568999999999999999999999999999999998 899998643

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=1.5e-51  Score=373.17  Aligned_cols=200  Identities=16%  Similarity=0.128  Sum_probs=180.3

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      .++|++.+.||+|+||.||+|..  +|+.||+|++... .....+.+.+|+.+|++++|||||++++++.+.+.+|+|||
T Consensus        28 ~d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~-~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE  106 (352)
T d1koba_          28 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTP-YPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILE  106 (352)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-SHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEE
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCc-chhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEE
Confidence            35699999999999999999998  7899999999765 33445678899999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeC--CCCceEEecCCCCccc
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFN--EENVAKLFDFSESISI  225 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~--~~~~~kl~Dfg~a~~~  225 (338)
                      ||+||+|.+.+.....    ++++..+..++.||+.||.|||   +.+|+||||||+|||++  .++.+||+|||+|...
T Consensus       107 ~~~gg~L~~~~~~~~~----~l~e~~~~~i~~qi~~aL~ylH---~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~  179 (352)
T d1koba_         107 FLSGGELFDRIAAEDY----KMSEAEVINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKL  179 (352)
T ss_dssp             CCCCCBHHHHTTCTTC----CBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTCCCEEECCCTTCEEC
T ss_pred             cCCCChHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHH---HCCeeecccccccccccccCCCeEEEeecccceec
Confidence            9999999998876553    6999999999999999999999   89999999999999998  6789999999999887


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ......   ....||+.|+|||++.+..++.++|||||||++|||+||+.||...
T Consensus       180 ~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~  231 (352)
T d1koba_         180 NPDEIV---KVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGE  231 (352)
T ss_dssp             CTTSCE---EEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             CCCCce---eeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCC
Confidence            655432   4557899999999999999999999999999999999999999754

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.9e-52  Score=372.06  Aligned_cols=202  Identities=15%  Similarity=0.166  Sum_probs=181.4

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      -++|.+.+.||+|+||.||+|+.  +++.||+|++.+..  .....+.+.+|+.+|++++||||+++++++.+.+.+|+|
T Consensus         4 l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv   83 (337)
T d1o6la_           4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV   83 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccc
Confidence            36799999999999999999998  79999999997542  223457789999999999999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||+++|+|.+++....     .+++..+..++.||+.||.|||   +++|+||||||+|||++.+|.+||+|||+|+..
T Consensus        84 ~ey~~gg~L~~~~~~~~-----~~~e~~~~~~~~qil~al~ylH---~~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~  155 (337)
T d1o6la_          84 MEYANGGELFFHLSRER-----VFTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEG  155 (337)
T ss_dssp             EECCTTCBHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCS
T ss_pred             eeccCCCchhhhhhccc-----CCcHHHHHHHHHHHhhhhhhhh---hcCccccccCHHHeEecCCCCEEEeeccccccc
Confidence            99999999999998765     5999999999999999999999   999999999999999999999999999999876


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ......  .....||+.|+|||++.+..++.++||||+||++|||+||++||...+
T Consensus       156 ~~~~~~--~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~  209 (337)
T d1o6la_         156 ISDGAT--MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD  209 (337)
T ss_dssp             CCTTCC--BCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             ccCCcc--cccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcC
Confidence            543322  145679999999999999999999999999999999999999998643

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-51  Score=367.71  Aligned_cols=197  Identities=17%  Similarity=0.221  Sum_probs=178.9

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++|++.+.||+|+||+||+|..  +|+.||+|++.+..  .....+.+.+|+.+|++++||||+++++++.+.+..|+||
T Consensus         4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivm   83 (316)
T d1fota_           4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM   83 (316)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeEe
Confidence            4688999999999999999998  78999999997532  2234577899999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||++||+|..++....     .+++..+..++.||+.||.|||   +++|+||||||+|||++.+|.+||+|||+|+...
T Consensus        84 E~~~gg~l~~~~~~~~-----~~~~~~~~~~~~qi~~al~~lH---~~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~  155 (316)
T d1fota_          84 DYIEGGELFSLLRKSQ-----RFPNPVAKFYAAEVCLALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVP  155 (316)
T ss_dssp             CCCCSCBHHHHHHHTS-----SCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTSCEEECCCSSCEECS
T ss_pred             eecCCccccccccccc-----cccccHHHHHHHHHHHhhhhhc---cCcEEccccCchheeEcCCCCEEEecCccceEec
Confidence            9999999999998765     5889999999999999999999   9999999999999999999999999999998875


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ...     ....||+.|+|||++.+..++.++|||||||++|||+||+.||...
T Consensus       156 ~~~-----~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~  204 (316)
T d1fota_         156 DVT-----YTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDS  204 (316)
T ss_dssp             SCB-----CCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             ccc-----ccccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCc
Confidence            543     4467999999999999999999999999999999999999999754

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-51  Score=362.70  Aligned_cols=201  Identities=17%  Similarity=0.139  Sum_probs=179.3

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-----CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcc
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-----SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIP  142 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~  142 (338)
                      .+.|.+.+.||+|+||+||+|.+  +|+.||+|++.+..     .....+.+.+|+.+|++++|||||++++++.+.+..
T Consensus         9 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~   88 (293)
T d1jksa_           9 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV   88 (293)
T ss_dssp             GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             ccCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEE
Confidence            46799999999999999999998  78999999986542     122357899999999999999999999999999999


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC----ceEEec
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN----VAKLFD  218 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~----~~kl~D  218 (338)
                      |+|||||++|+|.+++....     .+++..+..++.|++.||.|||   +.+|+||||||+||+++.++    .+||+|
T Consensus        89 ~iv~E~~~gg~L~~~i~~~~-----~l~~~~~~~~~~qi~~al~yLH---~~~ivHrDiKp~Nill~~~~~~~~~vkl~D  160 (293)
T d1jksa_          89 ILILELVAGGELFDFLAEKE-----SLTEEEATEFLKQILNGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIID  160 (293)
T ss_dssp             EEEEECCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCSSSSSCCEEECC
T ss_pred             EEEEEcCCCccccchhcccc-----ccchhHHHHHHHHHHHHHHhhh---hcceeecccccceEEEecCCCcccceEecc
Confidence            99999999999999997754     6999999999999999999999   89999999999999998776    499999


Q ss_pred             CCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          219 FSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       219 fg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ||+|.........   ....||+.|+|||++.+..++.++|||||||++|||+||+.||...+
T Consensus       161 fG~a~~~~~~~~~---~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~  220 (293)
T d1jksa_         161 FGLAHKIDFGNEF---KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDT  220 (293)
T ss_dssp             CTTCEECTTSCBC---SCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             hhhhhhcCCCccc---cccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCC
Confidence            9999887554332   45578999999999999999999999999999999999999998543

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-52  Score=371.80  Aligned_cols=204  Identities=20%  Similarity=0.317  Sum_probs=172.5

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCe----EEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QER----LISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPIL  144 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~----~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l  144 (338)
                      ++|++.++||+|+||+||+|.+  +|+    .||+|++....+....+.+.+|+.++++++|||||+++|+|.++ ..++
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-~~~~   87 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQL   87 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS-SEEE
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-CeeE
Confidence            4699999999999999999998  343    68999987665556678899999999999999999999999865 5688


Q ss_pred             EEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          145 VFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       145 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ++||+.+|+|.+.+.....    .+++..+++++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+|+.
T Consensus        88 v~e~~~~~~l~~~~~~~~~----~~~~~~~~~i~~qi~~gl~yLH---~~~iiHrDlKp~NIll~~~~~~kl~DFGla~~  160 (317)
T d1xkka_          88 ITQLMPFGCLLDYVREHKD----NIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKL  160 (317)
T ss_dssp             EEECCTTCBHHHHHHHTSS----SCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCCSHHHH
T ss_pred             EEEeccCCccccccccccc----CCCHHHHHHHHHHHHHHHHHHH---HcCcccCcchhhcceeCCCCCeEeecccccee
Confidence            8999999999998887654    7999999999999999999999   89999999999999999999999999999988


Q ss_pred             cCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccC
Q 038823          225 IPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRT  282 (338)
Q Consensus       225 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~  282 (338)
                      ..............||+.|+|||.+.++.++.++|||||||++|||+| |++||.....
T Consensus       161 ~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~  219 (317)
T d1xkka_         161 LGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA  219 (317)
T ss_dssp             TTTTCC--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCG
T ss_pred             cccccccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCH
Confidence            766554444355678999999999999999999999999999999999 8899976543

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-52  Score=365.75  Aligned_cols=208  Identities=21%  Similarity=0.253  Sum_probs=170.1

Q ss_pred             HHHhhcCCCcCCccccCCCceEEEEEE--C---CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCC
Q 038823           66 LEIATNNYDERKFIKQDSTYKLYKGFW--Q---ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETP  140 (338)
Q Consensus        66 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~---~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~  140 (338)
                      |+...++|.+.+.||+|+||.||+|.+  +   +..||+|.+.........+.+.+|+.++++++||||++++|++. .+
T Consensus         2 ~ei~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~   80 (273)
T d1mp8a_           2 YEIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-EN   80 (273)
T ss_dssp             CBCCGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SS
T ss_pred             CCcCHHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cC
Confidence            344567899999999999999999998  2   34689999877656666788999999999999999999999996 46


Q ss_pred             cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCC
Q 038823          141 IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFS  220 (338)
Q Consensus       141 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg  220 (338)
                      ..++||||+++|+|.+++.....    .+++..++.++.||+.||.|||   +.+|+||||||+||++++++.+||+|||
T Consensus        81 ~~~iv~E~~~~g~l~~~~~~~~~----~l~~~~~~~~~~qi~~gl~ylH---~~~iiHrDlKp~NIll~~~~~~Kl~DfG  153 (273)
T d1mp8a_          81 PVWIIMELCTLGELRSFLQVRKY----SLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFG  153 (273)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTTT----TSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECC--
T ss_pred             eEEEEEEeccCCcHHhhhhccCC----CCCHHHHHHHHHHHHHHhhhhc---ccCeeccccchhheeecCCCcEEEccch
Confidence            78999999999999998876553    6999999999999999999999   8999999999999999999999999999


Q ss_pred             CCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccC
Q 038823          221 ESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRT  282 (338)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~  282 (338)
                      +|+......... .....||+.|+|||.+.+..++.++|||||||++|||+| |.+||.....
T Consensus       154 ~a~~~~~~~~~~-~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~  215 (273)
T d1mp8a_         154 LSRYMEDSTYYK-ASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN  215 (273)
T ss_dssp             ------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCG
T ss_pred             hheeccCCccee-ccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCH
Confidence            998765433322 245568999999999999999999999999999999998 8999986544

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.6e-51  Score=366.40  Aligned_cols=252  Identities=21%  Similarity=0.246  Sum_probs=202.9

Q ss_pred             HHHHHHhhcCCCcCCccccCCCceEEEEEE-------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeee
Q 038823           63 AKELEIATNNYDERKFIKQDSTYKLYKGFW-------QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGC  135 (338)
Q Consensus        63 ~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~  135 (338)
                      +.+++.+.++|++.+.||+|+||+||+|++       ++..||||++.........+.+.+|+.+|++++||||++++++
T Consensus         5 ~~~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~   84 (301)
T d1lufa_           5 LLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGV   84 (301)
T ss_dssp             HHHTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             hhhccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceee
Confidence            446777888999999999999999999997       2468999999877666667889999999999999999999999


Q ss_pred             eecCCcceEEEeecCCCCHHHhhhcCCC-------------------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCe
Q 038823          136 CLETPIPILVFEYGEYTTLRDRIFGAPQ-------------------PHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPI  196 (338)
Q Consensus       136 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~-------------------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~i  196 (338)
                      |.+.+..++||||+++|+|.+++.....                   .....+++..++.++.|++.||+|||   +.+|
T Consensus        85 ~~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH---~~~i  161 (301)
T d1lufa_          85 CAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKF  161 (301)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH---HTTC
T ss_pred             eccCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcc---cCCe
Confidence            9999999999999999999999864321                   11235899999999999999999999   8999


Q ss_pred             eecCCCCCceeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCC-C
Q 038823          197 VFGNLISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ-S  275 (338)
Q Consensus       197 iH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~-~  275 (338)
                      +||||||+|||++.++.+||+|||+|+...............||+.|+|||.+.+..++.++|||||||++|||+||. +
T Consensus       162 vHrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~  241 (301)
T d1lufa_         162 VHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQ  241 (301)
T ss_dssp             CCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             EeeEEcccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCC
Confidence            999999999999999999999999998765544443335667899999999999999999999999999999999986 5


Q ss_pred             CcCCccCCcccccHHHHHHHHHhcCccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          276 TRDLLRTHGSVRHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       276 p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                      ||.....    ..+.    ..+.++...+.     ..        .+..++.+|+.+||+.||
T Consensus       242 p~~~~~~----~e~~----~~v~~~~~~~~-----p~--------~~~~~~~~li~~cl~~~P  283 (301)
T d1lufa_         242 PYYGMAH----EEVI----YYVRDGNILAC-----PE--------NCPLELYNLMRLCWSKLP  283 (301)
T ss_dssp             TTTTSCH----HHHH----HHHHTTCCCCC-----CT--------TCCHHHHHHHHHHTCSSG
T ss_pred             CCCCCCH----HHHH----HHHHcCCCCCC-----Cc--------cchHHHHHHHHHHcCCCh
Confidence            6765432    1122    22233322211     11        122358889999999987

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-52  Score=364.65  Aligned_cols=209  Identities=22%  Similarity=0.242  Sum_probs=173.4

Q ss_pred             cCHHHHHHhhcCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecC
Q 038823           61 FSAKELEIATNNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLET  139 (338)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~  139 (338)
                      ...++|+...++|++.+.||+|+||.||+|.+ ++..||||++.....  ..+.|.+|+.++++++|||||+++|+|.+ 
T Consensus         7 ~~~~~~~i~~~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~--~~~~~~~E~~~l~~l~h~nIv~~~g~~~~-   83 (285)
T d1fmka3           7 LAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM--SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-   83 (285)
T ss_dssp             SSTTCSBCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS--CHHHHHHHHHHHHHCCCTTBCCEEEEECS-
T ss_pred             CCCcceEcCHHHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcccC--CHHHHHHHHHHHHhcccCCEeEEEEEEec-
Confidence            34455666678899999999999999999999 667899999975533  23679999999999999999999999865 


Q ss_pred             CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecC
Q 038823          140 PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDF  219 (338)
Q Consensus       140 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Df  219 (338)
                      +..++||||+++|+|..++.....   ..+++..++.++.||+.||.|||   +.+|+||||||+|||++.++.+||+||
T Consensus        84 ~~~~lv~Ey~~~g~l~~~~~~~~~---~~l~~~~~~~i~~~i~~gl~~LH---~~~ivH~DlKp~NIll~~~~~~kl~Df  157 (285)
T d1fmka3          84 EPIYIVTEYMSKGSLLDFLKGETG---KYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADF  157 (285)
T ss_dssp             SSCEEEECCCTTCBHHHHHSHHHH---TTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCC
T ss_pred             CCeEEEEEecCCCchhhhhhhccc---ccchHHHHHHHHHHHHHHHHHHh---hhheecccccceEEEECCCCcEEEccc
Confidence            568999999999999988875432   25999999999999999999999   899999999999999999999999999


Q ss_pred             CCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          220 SESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       220 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      |+|+.......... ....||+.|+|||++.++.++.++|||||||++|||+||..|+..
T Consensus       158 Gla~~~~~~~~~~~-~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~  216 (285)
T d1fmka3         158 GLARLIEDNEYTAR-QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP  216 (285)
T ss_dssp             CTTC---------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSST
T ss_pred             chhhhccCCCceee-ccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCC
Confidence            99987754433322 445689999999999999999999999999999999997666543

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.8e-51  Score=367.78  Aligned_cols=197  Identities=14%  Similarity=0.135  Sum_probs=178.9

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~  146 (338)
                      ++|++.+.||+|+||.||+|.+  +|+.||+|++.+..  .....+.+.+|+.+|+.++||||+++++++.+.+..++||
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~  120 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM  120 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccccccccccc
Confidence            5799999999999999999998  78999999986432  2233567899999999999999999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+.+|+|.+++...+     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+|+...
T Consensus       121 e~~~~g~l~~~l~~~~-----~l~e~~~~~i~~qi~~aL~yLH---~~~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~  192 (350)
T d1rdqe_         121 EYVAGGEMFSHLRRIG-----RFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK  192 (350)
T ss_dssp             ECCTTCBHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECS
T ss_pred             ccccccchhhhHhhcC-----CCCHHHHHHHHHHHHHHHHHHH---hCCEecCcCCHHHcccCCCCCEEeeeceeeeecc
Confidence            9999999999997764     5999999999999999999999   8999999999999999999999999999998775


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ...     ....||+.|+|||++.+..++.++|||||||++|||+||+.||...
T Consensus       193 ~~~-----~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~  241 (350)
T d1rdqe_         193 GRT-----WTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFAD  241 (350)
T ss_dssp             SCB-----CCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccc-----ccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCc
Confidence            432     3457999999999999999999999999999999999999999753

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3.4e-50  Score=353.76  Aligned_cols=203  Identities=22%  Similarity=0.293  Sum_probs=171.0

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCc----
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPI----  141 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~----  141 (338)
                      .++|.+.+.||+|+||.||+|.+  +++.||+|++....  +....+.+.+|+.++++++||||+++++++...+.    
T Consensus         6 ~drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~   85 (277)
T d1o6ya_           6 SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   85 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEE
T ss_pred             cceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCce
Confidence            46799999999999999999998  79999999997653  33445679999999999999999999999876543    


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCC
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSE  221 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~  221 (338)
                      +|+||||++|++|.+++...+     ++++..+..++.||+.||.|||   +.+|+||||||+|||++.++..+|+|||.
T Consensus        86 ~~lvmE~~~g~~L~~~~~~~~-----~l~~~~~~~i~~qi~~al~~lH---~~~iiHrDiKP~NIll~~~~~~~l~d~~~  157 (277)
T d1o6ya_          86 PYIVMEYVDGVTLRDIVHTEG-----PMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGI  157 (277)
T ss_dssp             EEEEEECCCEEEHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTSCEEECCCTT
T ss_pred             EEEEEECCCCCEehhhhcccC-----CCCHHHHHHHHHHHHHHHHHHH---hCCccCccccCcccccCccccceeehhhh
Confidence            789999999999999887764     6999999999999999999999   89999999999999999999999999999


Q ss_pred             CcccCCCCc-eeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          222 SISIPEGET-HIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       222 a~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      +........ ........||+.|+|||++.+..++.++|||||||++|||+||++||...
T Consensus       158 ~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~  217 (277)
T d1o6ya_         158 ARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD  217 (277)
T ss_dssp             CEECC----------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             hhhhccccccccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCc
Confidence            876543322 12225567999999999999999999999999999999999999999753

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-51  Score=357.98  Aligned_cols=236  Identities=18%  Similarity=0.241  Sum_probs=184.3

Q ss_pred             HhhcCCCcCCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeec-CCcceEEE
Q 038823           68 IATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLE-TPIPILVF  146 (338)
Q Consensus        68 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~-~~~~~lv~  146 (338)
                      ...++|++.+.||+|+||.||+|.++|..||||++++..   ..+.+.+|+.++++++||||++++|+|.+ .+.+++||
T Consensus         4 i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~vAvK~i~~~~---~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~   80 (262)
T d1byga_           4 LNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDA---TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVT   80 (262)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETTEEEEEEECCCCC-----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEE
T ss_pred             cCHHHeEEeEEEecCCCeEEEEEEECCeEEEEEEECcHH---HHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEE
Confidence            345678888999999999999999999999999997542   33678999999999999999999999865 45689999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ||+++|+|.+++.....   ..+++..+++++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+++...
T Consensus        81 ey~~~g~L~~~l~~~~~---~~l~~~~~~~i~~~i~~al~ylH---~~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~  154 (262)
T d1byga_          81 EYMAKGSLVDYLRSRGR---SVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEAS  154 (262)
T ss_dssp             CCCTTEEHHHHHHHHHH---HHCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEECCCCC-----
T ss_pred             eccCCCCHHHHHHhcCC---CCCCHHHHHHHHHHHHhhccccc---cCceeccccchHhheecCCCCEeecccccceecC
Confidence            99999999999975432   25899999999999999999999   8999999999999999999999999999998754


Q ss_pred             CCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccCCcccccHHHHHHHHHhcCccccc
Q 038823          227 EGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRTHGSVRHLIEYLKNYLQNNRFTEI  305 (338)
Q Consensus       227 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  305 (338)
                      ...     ....+|..|+|||++.++.++.++|||||||++|||+| |++||.....    ..+...+    .++...+.
T Consensus       155 ~~~-----~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~----~~~~~~i----~~~~~~~~  221 (262)
T d1byga_         155 STQ-----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL----KDVVPRV----EKGYKMDA  221 (262)
T ss_dssp             ------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCG----GGHHHHH----TTTCCCCC
T ss_pred             CCC-----ccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCH----HHHHHHH----HcCCCCCC
Confidence            432     34457899999999999999999999999999999998 7888875433    2333332    22211111


Q ss_pred             cccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          306 ADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       306 ~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                       .    ..        ...++.+++.+||+.||
T Consensus       222 -~----~~--------~~~~~~~li~~cl~~dP  241 (262)
T d1byga_         222 -P----DG--------CPPAVYEVMKNCWHLDA  241 (262)
T ss_dssp             -C----TT--------CCHHHHHHHHHHTCSSG
T ss_pred             -C----cc--------CCHHHHHHHHHHcccCH
Confidence             1    11        12357788889998887

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-50  Score=360.24  Aligned_cols=200  Identities=21%  Similarity=0.268  Sum_probs=176.9

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC--CchHHHHHHHHHHHHh-ccCCcceeeeeeeeecCCcceEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY--SDSACKFSINNIVYAA-QMDHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~-~l~h~niv~l~~~~~~~~~~~lv  145 (338)
                      ++|.+.+.||+|+||+||+|++  +++.||+|++.+..  .....+.+..|..++. .++||||+++++++.+++..|+|
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yiv   81 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFV   81 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEE
Confidence            5788999999999999999999  89999999997532  2233456777777765 68999999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCccc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISI  225 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~  225 (338)
                      |||+++|+|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||+++++.+||+|||+++..
T Consensus        82 mEy~~~g~L~~~i~~~~-----~~~e~~~~~~~~qi~~al~ylH---~~~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~  153 (320)
T d1xjda_          82 MEYLNGGDLMYHIQSCH-----KFDLSRATFYAAEIILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCKEN  153 (320)
T ss_dssp             EECCTTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCC
T ss_pred             EeecCCCcHHHHhhccC-----CCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCcccceeecCCCceeccccchhhhc
Confidence            99999999999998764     5899999999999999999999   899999999999999999999999999999876


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ......  .....||+.|+|||++.+..++.++|||||||++|||+||+.||...
T Consensus       154 ~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~  206 (320)
T d1xjda_         154 MLGDAK--TNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQ  206 (320)
T ss_dssp             CCTTCC--BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cccccc--ccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCC
Confidence            543322  14567999999999999999999999999999999999999999754

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=1.1e-49  Score=349.69  Aligned_cols=240  Identities=18%  Similarity=0.214  Sum_probs=194.5

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCc--------hHHHHHHHHHHHHhccC-Ccceeeeeeeeec
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSD--------SACKFSINNIVYAAQMD-HKHILKLIGCCLE  138 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~--------~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~  138 (338)
                      .++|++.+.||+|+||+||+|+.  +++.||+|++......        ...+.+.+|+.++++++ ||||+++++++.+
T Consensus         2 ~~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~   81 (277)
T d1phka_           2 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET   81 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred             cccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccc
Confidence            36789999999999999999998  8899999998754311        12346889999999997 9999999999999


Q ss_pred             CCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEec
Q 038823          139 TPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFD  218 (338)
Q Consensus       139 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~D  218 (338)
                      ++..|+||||+++|+|.+++...+     ++++..+..++.||+.||.|||   ..+|+||||||+||+++.++.+||+|
T Consensus        82 ~~~~~ivmE~~~~g~L~~~l~~~~-----~l~e~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~Nill~~~~~~kl~D  153 (277)
T d1phka_          82 NTFFFLVFDLMKKGELFDYLTEKV-----TLSEKETRKIMRALLEVICALH---KLNIVHRDLKPENILLDDDMNIKLTD  153 (277)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECC
T ss_pred             CcceEEEEEcCCCchHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HcCCcccccccceEEEcCCCCeEEcc
Confidence            999999999999999999997654     6999999999999999999999   89999999999999999999999999


Q ss_pred             CCCCcccCCCCceeeeecccccCCccccccccc------CCCCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHH
Q 038823          219 FSESISIPEGETHIITRSRFGAWTYSAPEYKRG------GVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEY  292 (338)
Q Consensus       219 fg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~  292 (338)
                      ||+++........   ....||+.|+|||.+.+      ..++.++||||+||++|||+||+.||.....    .   . 
T Consensus       154 FG~a~~~~~~~~~---~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~----~---~-  222 (277)
T d1phka_         154 FGFSCQLDPGEKL---REVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQ----M---L-  222 (277)
T ss_dssp             CTTCEECCTTCCB---CCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH----H---H-
T ss_pred             chheeEccCCCce---eeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCCH----H---H-
Confidence            9999887654322   45679999999998853      3478899999999999999999999985432    1   1 


Q ss_pred             HHHHHhcCccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          293 LKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       293 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                      ....+..+..... .+.         ......++.+++.+||+.||
T Consensus       223 ~~~~i~~~~~~~~-~~~---------~~~~s~~~~~li~~~L~~~p  258 (277)
T d1phka_         223 MLRMIMSGNYQFG-SPE---------WDDYSDTVKDLVSRFLVVQP  258 (277)
T ss_dssp             HHHHHHHTCCCCC-TTT---------GGGSCHHHHHHHHHHCCSSG
T ss_pred             HHHHHHhCCCCCC-Ccc---------cccCCHHHHHHHHHHccCCh
Confidence            1122222221110 000         01122358899999999997

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-51  Score=361.65  Aligned_cols=217  Identities=18%  Similarity=0.265  Sum_probs=175.4

Q ss_pred             CHHHHHHhhcCCCcCCccccCCCceEEEEEE-------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeee
Q 038823           62 SAKELEIATNNYDERKFIKQDSTYKLYKGFW-------QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLI  133 (338)
Q Consensus        62 ~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~  133 (338)
                      ...+|+...++|++.+.||+|+||.||+|.+       +++.||+|++.........+.+.+|...+.++ +|+||+.++
T Consensus         4 ~~~~wei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~   83 (299)
T d1ywna1           4 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL   83 (299)
T ss_dssp             CHHHHBCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             CCccccccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEee
Confidence            4567777888999999999999999999997       23679999998766666667888999988887 589999999


Q ss_pred             eeeecC-CcceEEEeecCCCCHHHhhhcCCCC-----------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCC
Q 038823          134 GCCLET-PIPILVFEYGEYTTLRDRIFGAPQP-----------HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNL  201 (338)
Q Consensus       134 ~~~~~~-~~~~lv~e~~~~gsL~~~l~~~~~~-----------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~di  201 (338)
                      +++.+. +..++||||+++|+|.+++......           ....+++..++.++.||+.||.|||   +.+|+||||
T Consensus        84 ~~~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH---~~~ivHrDl  160 (299)
T d1ywna1          84 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDL  160 (299)
T ss_dssp             EEECSTTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCC
T ss_pred             eeeccCCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHH---hCCCcCCcC
Confidence            998754 4689999999999999999754210           1125899999999999999999999   899999999


Q ss_pred             CCCceeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCC-CCcCCc
Q 038823          202 ISLCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ-STRDLL  280 (338)
Q Consensus       202 k~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~-~p~~~~  280 (338)
                      ||+|||+++++.+||+|||+|+...............||+.|+|||.+.++.++.++|||||||++|||+||. +||...
T Consensus       161 Kp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~  240 (299)
T d1ywna1         161 AARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV  240 (299)
T ss_dssp             CGGGEEECGGGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             CccceeECCCCcEEEccCcchhhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCC
Confidence            9999999999999999999998765554443335567999999999999999999999999999999999974 577654


Q ss_pred             c
Q 038823          281 R  281 (338)
Q Consensus       281 ~  281 (338)
                      .
T Consensus       241 ~  241 (299)
T d1ywna1         241 K  241 (299)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.4e-50  Score=364.78  Aligned_cols=199  Identities=14%  Similarity=0.172  Sum_probs=173.1

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-----CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcce
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-----SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPI  143 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~  143 (338)
                      ++|++.+.||+|+||.||+|..  +|+.||+|++.+..     ..........++.+++.++|||||++++++.+.+..|
T Consensus         4 ddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~~   83 (364)
T d1omwa3           4 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS   83 (364)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred             HhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEEE
Confidence            5799999999999999999999  78999999986431     1111223344577788888999999999999999999


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      +||||+++|+|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+|+
T Consensus        84 ivmE~~~gg~L~~~l~~~~-----~~~e~~~~~~~~qi~~aL~ylH---~~~iiHrDlKP~NILl~~~g~iKl~DFGla~  155 (364)
T d1omwa3          84 FILDLMNGGDLHYHLSQHG-----VFSEADMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLAC  155 (364)
T ss_dssp             EEECCCCSCBHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECSSSCEEECCCTTCE
T ss_pred             EEEEecCCCcHHHHHHhcc-----cccHHHHHHHHHHHHHHHHHHH---HCCccceeeccceeEEcCCCcEEEeeeceee
Confidence            9999999999999998764     5899999999999999999999   9999999999999999999999999999998


Q ss_pred             ccCCCCceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          224 SIPEGETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       224 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      .......    ....||+.|+|||++.. ..++.++|||||||++|||+||+.||....
T Consensus       156 ~~~~~~~----~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~  210 (364)
T d1omwa3         156 DFSKKKP----HASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHK  210 (364)
T ss_dssp             ECSSSCC----CSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSC
T ss_pred             ecCCCcc----cccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCC
Confidence            7765432    45579999999999875 458999999999999999999999998644

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-50  Score=354.12  Aligned_cols=241  Identities=20%  Similarity=0.298  Sum_probs=183.1

Q ss_pred             hcCCCcCCccccCCCceEEEEEE---C--CeEEEEEEeCcCC--CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcc
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW---Q--ERLISVMKYNESY--SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIP  142 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~---~--~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~  142 (338)
                      .++|++.+.||+|+||.||+|++   +  ...||||++....  .....+.|.+|+.+|++++||||++++|+|.+ +..
T Consensus         7 ~~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~-~~~   85 (273)
T d1u46a_           7 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-PPM   85 (273)
T ss_dssp             GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSC
T ss_pred             hHHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-cch
Confidence            35688899999999999999987   2  2368999987543  34456789999999999999999999999976 467


Q ss_pred             eEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCC
Q 038823          143 ILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSES  222 (338)
Q Consensus       143 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a  222 (338)
                      ++||||+++|+|.+.+.....    .+++..++.++.||+.||.|||   +++|+||||||+||+++.++.+||+|||++
T Consensus        86 ~lv~e~~~~~~l~~~~~~~~~----~l~~~~~~~~~~qi~~gl~ylH---~~~iiHrDikp~NIll~~~~~vkl~DfGl~  158 (273)
T d1u46a_          86 KMVTELAPLGSLLDRLRKHQG----HFLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLM  158 (273)
T ss_dssp             EEEEECCTTCBHHHHHHHHGG----GSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTC
T ss_pred             heeeeeecCcchhhhhhcccC----CCCHHHHHHHHHHHHHHHHHhh---hCCEeeeeecHHHhccccccceeeccchhh
Confidence            899999999999998876543    6999999999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCCcee-eeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCccCCcccccHHHHHHHHHhcC
Q 038823          223 ISIPEGETHI-ITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLRTHGSVRHLIEYLKNYLQNN  300 (338)
Q Consensus       223 ~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~~~~~~~~l~~~~~~~~~~~  300 (338)
                      +......... ......|+..|+|||.+.+..++.++|||||||++|||+| |+.||...+.    .   +.+......+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~----~---~~~~~i~~~~  231 (273)
T d1u46a_         159 RALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNG----S---QILHKIDKEG  231 (273)
T ss_dssp             EECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCH----H---HHHHHHHTSC
T ss_pred             hhcccCCCcceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcCH----H---HHHHHHHhCC
Confidence            9876554332 2244567889999999999999999999999999999998 8999975433    1   2222222222


Q ss_pred             ccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          301 RFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       301 ~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                      . .....+            .....+.+|+.+||+.||
T Consensus       232 ~-~~~~~~------------~~~~~l~~li~~cl~~dp  256 (273)
T d1u46a_         232 E-RLPRPE------------DCPQDIYNVMVQCWAHKP  256 (273)
T ss_dssp             C-CCCCCT------------TCCHHHHHHHHHHTCSSG
T ss_pred             C-CCCCcc------------cccHHHHHHHHHHcCCCh
Confidence            1 111111            112357889999999887

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-49  Score=356.89  Aligned_cols=200  Identities=17%  Similarity=0.188  Sum_probs=178.3

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      .++|.+.+.||+|+||+||+|.+  +++.||+|.+....  .....+.+|+.+|++++|||||++++++.+.+.+|+|||
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~--~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE   81 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG--TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFE   81 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT--HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCc--ccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEe
Confidence            35788999999999999999998  78999999997652  233568899999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC--CceEEecCCCCccc
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE--NVAKLFDFSESISI  225 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~--~~~kl~Dfg~a~~~  225 (338)
                      ||+||+|.+++...+.    .+++..+..++.||+.||.|||   +.+|+||||||+|||++.+  +.+||+|||+++..
T Consensus        82 ~~~gg~L~~~i~~~~~----~l~e~~~~~i~~qi~~al~yLH---~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~  154 (321)
T d1tkia_          82 FISGLDIFERINTSAF----ELNEREIVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQL  154 (321)
T ss_dssp             CCCCCBHHHHHTSSSC----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCTTCEEC
T ss_pred             cCCCCcHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHH---HcCCCcccccccceeecCCCceEEEEcccchhhcc
Confidence            9999999999977653    6999999999999999999999   8999999999999999854  57999999999877


Q ss_pred             CCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          226 PEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       226 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ......   ....+|+.|+|||...+..++.++|||||||++|+|+||+.||....
T Consensus       155 ~~~~~~---~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~  207 (321)
T d1tkia_         155 KPGDNF---RLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAET  207 (321)
T ss_dssp             CTTCEE---EEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred             ccCCcc---cccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCC
Confidence            554332   44568999999999999999999999999999999999999998643

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-49  Score=351.57  Aligned_cols=253  Identities=19%  Similarity=0.255  Sum_probs=188.9

Q ss_pred             cCCCcCCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCC----cceEEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETP----IPILVF  146 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~----~~~lv~  146 (338)
                      .+|...+.||+|+||.||+|+++|+.||||++...  .........|+..+.+++||||++++++|.+.+    .+++||
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~~g~~vAvK~~~~~--~~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~   80 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSR--EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS   80 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEETTEEEEEEEECGG--GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEECCEEEEEEEECcc--chhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEEE
Confidence            35667788999999999999999999999998643  111122334555667789999999999998654    579999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC-----CCCCeeecCCCCCceeeCCCCceEEecCCC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVG-----FPRPIVFGNLISLCILFNEENVAKLFDFSE  221 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~-----~~~~iiH~dik~~Nill~~~~~~kl~Dfg~  221 (338)
                      ||+++|+|.+++.+.      .+++..+++++.|++.||.|||+.     ..++|+||||||+|||++.++.+||+|||+
T Consensus        81 Ey~~~g~L~~~l~~~------~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl  154 (303)
T d1vjya_          81 DYHEHGSLFDYLNRY------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL  154 (303)
T ss_dssp             ECCTTCBHHHHHHHC------CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTT
T ss_pred             ecccCCCHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCc
Confidence            999999999999764      589999999999999999999943     236999999999999999999999999999


Q ss_pred             CcccCCCCcee--eeecccccCCcccccccccCC------CCccchHHHHHHHHHHHHhCCCCcCCccCCcc-------c
Q 038823          222 SISIPEGETHI--ITRSRFGAWTYSAPEYKRGGV------FNEKLDVYTFSTVLLELLTGQSTRDLLRTHGS-------V  286 (338)
Q Consensus       222 a~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~------~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~-------~  286 (338)
                      ++.........  ......||+.|+|||++.+..      ++.++|||||||++|||+||..||........       .
T Consensus       155 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~  234 (303)
T d1vjya_         155 AVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPS  234 (303)
T ss_dssp             CEEEETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCS
T ss_pred             cccccCCCcceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccc
Confidence            98876543322  224567999999999987643      57789999999999999999988754332110       0


Q ss_pred             ccHHHHHHHHHhcCccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          287 RHLIEYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       287 ~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                      .............+.+    +|.+...+   .....+..+.+|+.+||+.||
T Consensus       235 ~~~~~~~~~~~~~~~~----~p~~~~~~---~~~~~~~~l~~li~~cl~~dp  279 (303)
T d1vjya_         235 DPSVEEMRKVVCEQKL----RPNIPNRW---QSCEALRVMAKIMRECWYANG  279 (303)
T ss_dssp             SCCHHHHHHHHTTSCC----CCCCCGGG---GGCHHHHHHHHHHHTTCCSSG
T ss_pred             cchHHHHHHHHhcccc----CCCCCccc---CChHHHHHHHHHHHHHcccCH
Confidence            0112223333333222    22222221   233566778899999999987

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-49  Score=352.97  Aligned_cols=212  Identities=20%  Similarity=0.261  Sum_probs=180.5

Q ss_pred             HHHhhcCCCcCCccccCCCceEEEEEE--C-------CeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeee
Q 038823           66 LEIATNNYDERKFIKQDSTYKLYKGFW--Q-------ERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGC  135 (338)
Q Consensus        66 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~--~-------~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~  135 (338)
                      |....++|.+.+.||+|+||.||+|+.  .       +..||+|++...........+.+|+..+.++ +|||||+++++
T Consensus         8 ~~i~~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~   87 (299)
T d1fgka_           8 WELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGA   87 (299)
T ss_dssp             TBCCGGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             CcccHHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccc
Confidence            455677899999999999999999987  1       2469999998876667778899999999998 79999999999


Q ss_pred             eecCCcceEEEeecCCCCHHHhhhcCCCC-----------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCC
Q 038823          136 CLETPIPILVFEYGEYTTLRDRIFGAPQP-----------HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISL  204 (338)
Q Consensus       136 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~-----------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~  204 (338)
                      |.+++..++||||+++|+|.+++......           ....+++.+++.++.||+.||.|||   +.+|+||||||+
T Consensus        88 ~~~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH---~~~ivHrDiKp~  164 (299)
T d1fgka_          88 CTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAAR  164 (299)
T ss_dssp             ECSSSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGG
T ss_pred             cccCCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhh---hCCEEeeeeccc
Confidence            99999999999999999999999765321           1235899999999999999999999   999999999999


Q ss_pred             ceeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCc
Q 038823          205 CILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLL  280 (338)
Q Consensus       205 Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~  280 (338)
                      |||++.++.+||+|||+++...............||+.|+|||.+.++.++.++|||||||++|||+| |++||...
T Consensus       165 NiLl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~  241 (299)
T d1fgka_         165 NVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGV  241 (299)
T ss_dssp             GEEECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             ceeecCCCCeEeccchhhccccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCC
Confidence            99999999999999999987765544433456678999999999999999999999999999999998 78888753

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-50  Score=357.70  Aligned_cols=214  Identities=18%  Similarity=0.240  Sum_probs=187.1

Q ss_pred             HHHHhhcCCCcCCccccCCCceEEEEEE-------CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeee
Q 038823           65 ELEIATNNYDERKFIKQDSTYKLYKGFW-------QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCC  136 (338)
Q Consensus        65 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-------~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~  136 (338)
                      +|+...++|++.+.||+|+||.||+|++       ++..||||++...........+.+|+.+++++ +|||||+++++|
T Consensus        17 ~~~~~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~   96 (311)
T d1t46a_          17 KWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGAC   96 (311)
T ss_dssp             GGBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cccCCHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEE
Confidence            5667778999999999999999999986       34689999998776666667899999999999 699999999999


Q ss_pred             ecCCcceEEEeecCCCCHHHhhhcCCCC-------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCC
Q 038823          137 LETPIPILVFEYGEYTTLRDRIFGAPQP-------------HFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLIS  203 (338)
Q Consensus       137 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~-------------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~  203 (338)
                      .+.+..++||||+++|+|.+++......             ....+++..+..++.||+.||.|||   +++++||||||
T Consensus        97 ~~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH---~~~ivHrDLKp  173 (311)
T d1t46a_          97 TIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAA  173 (311)
T ss_dssp             CSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSG
T ss_pred             eeCCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccccc
Confidence            9999999999999999999999764321             1235899999999999999999999   89999999999


Q ss_pred             CceeeCCCCceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHh-CCCCcCCcc
Q 038823          204 LCILFNEENVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLT-GQSTRDLLR  281 (338)
Q Consensus       204 ~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~t-G~~p~~~~~  281 (338)
                      +||+++.++.+||+|||.++...............||+.|+|||.+.++.++.++|||||||++|||+| |.+||....
T Consensus       174 ~NIl~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~  252 (311)
T d1t46a_         174 RNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMP  252 (311)
T ss_dssp             GGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC
T ss_pred             ccccccccCcccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCCC
Confidence            999999999999999999998776555555566789999999999999999999999999999999999 566665443

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-49  Score=355.48  Aligned_cols=251  Identities=21%  Similarity=0.271  Sum_probs=203.9

Q ss_pred             HHHHHhhcCCCcCCccccCCCceEEEEEEC-------CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeee
Q 038823           64 KELEIATNNYDERKFIKQDSTYKLYKGFWQ-------ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCC  136 (338)
Q Consensus        64 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~-------~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~  136 (338)
                      ++|+...++|...+.||+|+||+||+|.+.       +..||||++...........+.+|+.++++++||||++++|+|
T Consensus        13 ~~~ei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~   92 (308)
T d1p4oa_          13 DEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVV   92 (308)
T ss_dssp             CTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEE
T ss_pred             cceeecHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEE
Confidence            467777889999999999999999999872       4689999998766666667899999999999999999999999


Q ss_pred             ecCCcceEEEeecCCCCHHHhhhcCC-----CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCC
Q 038823          137 LETPIPILVFEYGEYTTLRDRIFGAP-----QPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEE  211 (338)
Q Consensus       137 ~~~~~~~lv~e~~~~gsL~~~l~~~~-----~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~  211 (338)
                      ...+..++||||+++|+|.+++....     ......+++..+.+++.|++.||.|||   +.+|+||||||+|||++.+
T Consensus        93 ~~~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH---~~~ivHrDlk~~NiLld~~  169 (308)
T d1p4oa_          93 SQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAED  169 (308)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCSGGGEEECTT
T ss_pred             ecCCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHh---hCCeeeceEcCCceeecCC
Confidence            99999999999999999999886421     111235799999999999999999999   8999999999999999999


Q ss_pred             CceEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCC-CCcCCccCCcccccHH
Q 038823          212 NVAKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ-STRDLLRTHGSVRHLI  290 (338)
Q Consensus       212 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~-~p~~~~~~~~~~~~l~  290 (338)
                      +++||+|||+|+...............||+.|+|||.+.++.++.++||||||+++|||+||. +||...+.       .
T Consensus       170 ~~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~~-------~  242 (308)
T d1p4oa_         170 FTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSN-------E  242 (308)
T ss_dssp             CCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCH-------H
T ss_pred             ceEEEeecccceeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCCCH-------H
Confidence            999999999998776655544445567899999999999999999999999999999999985 67764332       1


Q ss_pred             HHHHHHHhcCccccccccccccCcCCcccHHHHHHHHHHHHHccCCCC
Q 038823          291 EYLKNYLQNNRFTEIADPIIVQDLSCTETEHQFQACARLTLECLNESP  338 (338)
Q Consensus       291 ~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~C~~~~P  338 (338)
                      +... .+.++...+..+             .+...+.+++.+||+.+|
T Consensus       243 ~~~~-~i~~~~~~~~p~-------------~~~~~l~~li~~cl~~~P  276 (308)
T d1p4oa_         243 QVLR-FVMEGGLLDKPD-------------NCPDMLFELMRMCWQYNP  276 (308)
T ss_dssp             HHHH-HHHTTCCCCCCT-------------TCCHHHHHHHHHHTCSSG
T ss_pred             HHHH-HHHhCCCCCCcc-------------cchHHHHHHHHHHcCCCh
Confidence            1122 222222211111             122358889999999887

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-49  Score=358.97  Aligned_cols=198  Identities=15%  Similarity=0.198  Sum_probs=172.1

Q ss_pred             hcCCCcCC-ccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeeeec----CCc
Q 038823           70 TNNYDERK-FIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCCLE----TPI  141 (338)
Q Consensus        70 ~~~~~~~~-~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~----~~~  141 (338)
                      .++|.+.. .||+|+||+||+|.+  +++.||||++...      ..+.+|+.++.++ +|||||++++++.+    .+.
T Consensus        10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~------~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~   83 (335)
T d2ozaa1          10 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC------PKARREVELHWRASQCPHIVRIVDVYENLYAGRKC   83 (335)
T ss_dssp             GGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECS------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEE
T ss_pred             ccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECCc------HHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCE
Confidence            35788764 699999999999998  7899999999654      5677899987655 79999999999865    456


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC---CCceEEec
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE---ENVAKLFD  218 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~---~~~~kl~D  218 (338)
                      +|+|||||+||+|.+++...+.   ..+++..+..++.||+.||.|||   +.+|+||||||+|||++.   ++.+||+|
T Consensus        84 ~~ivmEy~~gg~L~~~i~~~~~---~~l~e~~~~~i~~qi~~al~ylH---~~~iiHRDiKp~NIll~~~~~~~~~Kl~D  157 (335)
T d2ozaa1          84 LLIVMECLDGGELFSRIQDRGD---QAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTD  157 (335)
T ss_dssp             EEEEEECCCSEEHHHHHHSCSC---CCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCSSTTCCEEECC
T ss_pred             EEEEEECCCCCcHHHHHHhcCC---CCcCHHHHHHHHHHHHHHHHHHH---HcCCccccccccccccccccccccccccc
Confidence            8999999999999999986542   26999999999999999999999   899999999999999985   46799999


Q ss_pred             CCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          219 FSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       219 fg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ||+|+........   ....||+.|+|||++.+..++.++|||||||++|+|+||+.||.....
T Consensus       158 FG~a~~~~~~~~~---~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~  218 (335)
T d2ozaa1         158 FGFAKETTSHNSL---TTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHG  218 (335)
T ss_dssp             CTTCEECCCCCCC---CCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTC
T ss_pred             cceeeeccCCCcc---ccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCH
Confidence            9999877654332   456799999999999998999999999999999999999999976443

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-49  Score=351.67  Aligned_cols=197  Identities=19%  Similarity=0.257  Sum_probs=172.4

Q ss_pred             CCccccCCCceEEEEEE-C----CeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeec-CCcceEEEeec
Q 038823           76 RKFIKQDSTYKLYKGFW-Q----ERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLE-TPIPILVFEYG  149 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~-~----~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~-~~~~~lv~e~~  149 (338)
                      .++||+|+||+||+|.+ +    ...||||+++...+....+.|.+|+++|++++||||++++|++.+ ++..++||||+
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~  111 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYM  111 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEECC
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEEe
Confidence            46799999999999998 2    235899999876677777889999999999999999999999875 45789999999


Q ss_pred             CCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCC
Q 038823          150 EYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGE  229 (338)
Q Consensus       150 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~  229 (338)
                      ++|+|.+++.....    .+++..+++++.|++.||.|||   +.+|+||||||+|||+++++.+||+|||+++......
T Consensus       112 ~~g~l~~~~~~~~~----~~~~~~~~~i~~qia~gL~~lH---~~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~  184 (311)
T d1r0pa_         112 KHGDLRNFIRNETH----NPTVKDLIGFGLQVAKGMKFLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE  184 (311)
T ss_dssp             TTCBHHHHHHCTTC----CCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTT
T ss_pred             ecCchhhhhccccc----cchHHHHHHHHHHHHHhhhhhc---ccCcccCCccHHhEeECCCCCEEEecccchhhccccc
Confidence            99999999887654    6889999999999999999999   8999999999999999999999999999998765443


Q ss_pred             cee--eeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          230 THI--ITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       230 ~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ...  ......||+.|+|||.+.++.++.++||||||+++|||+||..||..
T Consensus       185 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~  236 (311)
T d1r0pa_         185 FDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYP  236 (311)
T ss_dssp             CCCTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC
T ss_pred             cccceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCC
Confidence            221  12345689999999999999999999999999999999998888764

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-49  Score=355.38  Aligned_cols=204  Identities=19%  Similarity=0.203  Sum_probs=170.3

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCe--EEEEEEeCcCCCchHHHHHHHHHHHHhcc-CCcceeeeeeeeecCCcceEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QER--LISVMKYNESYSDSACKFSINNIVYAAQM-DHKHILKLIGCCLETPIPILV  145 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~--~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv  145 (338)
                      ++|++.+.||+|+||+||+|.+  ++.  .||||++.........+.+.+|+.+|.++ +|||||+++|+|.+.+..++|
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV   89 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA   89 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEE
Confidence            6788889999999999999998  444  57888887655555567899999999999 699999999999999999999


Q ss_pred             EeecCCCCHHHhhhcCCC-----------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCce
Q 038823          146 FEYGEYTTLRDRIFGAPQ-----------PHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVA  214 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~-----------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~  214 (338)
                      |||+++|+|.+++.....           .....+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+
T Consensus        90 ~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH---~~~iiHrDlkp~NIL~~~~~~~  166 (309)
T d1fvra_          90 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVA  166 (309)
T ss_dssp             ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCE
T ss_pred             EEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhh---cCCccccccccceEEEcCCCce
Confidence            999999999999976420           11236999999999999999999999   8999999999999999999999


Q ss_pred             EEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCC-CCcCCc
Q 038823          215 KLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQ-STRDLL  280 (338)
Q Consensus       215 kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~-~p~~~~  280 (338)
                      ||+|||+|+........   ....||..|+|||.+.++.++.++|||||||++|||+||. +||...
T Consensus       167 kl~DfG~a~~~~~~~~~---~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~  230 (309)
T d1fvra_         167 KIADFGLSRGQEVYVKK---TMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGM  230 (309)
T ss_dssp             EECCTTCEESSCEECCC-------CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             EEccccccccccccccc---cceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCC
Confidence            99999999765433221   3456899999999999999999999999999999999976 566543

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-48  Score=346.16  Aligned_cols=202  Identities=18%  Similarity=0.234  Sum_probs=171.2

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      ++|++.+.||+|+||+||+|.+  +++.||+|++.... .....+.+.+|+++|++++|||||++++++.+++..|+|||
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e   81 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   81 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEe
Confidence            5789999999999999999999  78999999997543 22335778999999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      |+.+ ++.+++.....   ..+++..+..++.|++.||.|||   +.+||||||||+|||++.++.+||+|||.|+....
T Consensus        82 ~~~~-~~~~~~~~~~~---~~l~e~~~~~~~~qil~~L~yLH---~~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~  154 (298)
T d1gz8a_          82 FLHQ-DLKKFMDASAL---TGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGV  154 (298)
T ss_dssp             CCSE-EHHHHHHHTTT---TCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSTTHHHHHCC
T ss_pred             ecCC-chhhhhhhhcc---cCCCHHHHHHHHHHHHHHHHHhh---cCCEEccccCchheeecccCcceeccCCcceeccC
Confidence            9985 55454433322   26999999999999999999999   89999999999999999999999999999987754


Q ss_pred             CCceeeeecccccCCcccccccccCC-CCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGV-FNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ....  .....||+.|+|||.+.... ++.++|||||||++|+|++|+.||...+
T Consensus       155 ~~~~--~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~  207 (298)
T d1gz8a_         155 PVRT--YTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDS  207 (298)
T ss_dssp             CSBC--TTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             Cccc--ceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCCC
Confidence            4322  14557999999999877665 5889999999999999999999997543

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-48  Score=346.57  Aligned_cols=196  Identities=19%  Similarity=0.208  Sum_probs=166.1

Q ss_pred             CCccccCCCceEEEEEE--CCeEEEEEEeCcCCCc----hHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEeec
Q 038823           76 RKFIKQDSTYKLYKGFW--QERLISVMKYNESYSD----SACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYG  149 (338)
Q Consensus        76 ~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  149 (338)
                      .++||+|+||+||+|.+  +|+.||||++......    ...+.+.+|+.+|++++|||||++++++.+++..++||||+
T Consensus         3 l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~~   82 (299)
T d1ua2a_           3 LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFM   82 (299)
T ss_dssp             EEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECC
T ss_pred             ceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhhh
Confidence            46899999999999998  7899999998754321    11346889999999999999999999999999999999999


Q ss_pred             CCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCCC
Q 038823          150 EYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEGE  229 (338)
Q Consensus       150 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~~  229 (338)
                      .++++..+.....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+|+......
T Consensus        83 ~~~~~~~~~~~~~-----~l~~~~~~~~~~qil~aL~~lH---~~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~  154 (299)
T d1ua2a_          83 ETDLEVIIKDNSL-----VLTPSHIKAYMLMTLQGLEYLH---QHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPN  154 (299)
T ss_dssp             SEEHHHHHTTCCS-----SCCSSHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCC
T ss_pred             cchHHhhhhhccc-----CCCHHHHHHHHHHHHHHHHHhh---ccceecccCCcceEEecCCCccccccCccccccCCCc
Confidence            9877776654432     6899999999999999999999   8999999999999999999999999999998765543


Q ss_pred             ceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          230 THIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       230 ~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ...  ....||+.|+|||.+... .++.++|||||||++|||+||++||....
T Consensus       155 ~~~--~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~  205 (299)
T d1ua2a_         155 RAY--THQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDS  205 (299)
T ss_dssp             CCC--CCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             ccc--cceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCCC
Confidence            221  445799999999998654 58999999999999999999999997543

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-48  Score=341.95  Aligned_cols=198  Identities=15%  Similarity=0.197  Sum_probs=170.3

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCC-c----hHHHHHHHHHHHHhccC--CcceeeeeeeeecCC
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYS-D----SACKFSINNIVYAAQMD--HKHILKLIGCCLETP  140 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~-~----~~~~~~~~e~~~l~~l~--h~niv~l~~~~~~~~  140 (338)
                      .++|.+.++||+|+||+||+|.+  +++.||+|++.+... .    .....+.+|+.+|++++  |||||++++++.+.+
T Consensus         3 ~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~   82 (273)
T d1xwsa_           3 ESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPD   82 (273)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSS
T ss_pred             CCeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCC
Confidence            35799999999999999999999  789999999864321 1    11234678999999997  899999999999999


Q ss_pred             cceEEEeecCC-CCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC-CCceEEec
Q 038823          141 IPILVFEYGEY-TTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE-ENVAKLFD  218 (338)
Q Consensus       141 ~~~lv~e~~~~-gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~-~~~~kl~D  218 (338)
                      ..++||||+.+ +++.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++. ++.+||+|
T Consensus        83 ~~~lv~e~~~~~~~l~~~~~~~~-----~l~e~~~~~~~~qi~~al~~lH---~~~iiHrDiKp~NIll~~~~~~vkl~D  154 (273)
T d1xwsa_          83 SFVLILERPEPVQDLFDFITERG-----ALQEELARSFFWQVLEAVRHCH---NCGVLHRDIKDENILIDLNRGELKLID  154 (273)
T ss_dssp             EEEEEEECCSSEEEHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECC
T ss_pred             eEEEEEEeccCcchHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHH---HCCCccccCcccceEEecCCCeEEECc
Confidence            99999999975 67888887654     6999999999999999999999   899999999999999985 47999999


Q ss_pred             CCCCcccCCCCceeeeecccccCCcccccccccCCC-CccchHHHHHHHHHHHHhCCCCcCC
Q 038823          219 FSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVF-NEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       219 fg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      ||+|+.......    ....||+.|+|||++.+..+ +.++|||||||++|||+||+.||..
T Consensus       155 FG~a~~~~~~~~----~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~  212 (273)
T d1xwsa_         155 FGSGALLKDTVY----TDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEH  212 (273)
T ss_dssp             CTTCEECCSSCB----CCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCS
T ss_pred             cccceecccccc----cccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCC
Confidence            999987654322    45679999999999987765 6779999999999999999999974

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-48  Score=344.68  Aligned_cols=202  Identities=15%  Similarity=0.169  Sum_probs=168.4

Q ss_pred             hcCCCcCCccccCCCceEEEEEE---CCeEEEEEEeCcCCC-chHHHHHHHHHHHHhcc---CCcceeeeeeeeec----
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW---QERLISVMKYNESYS-DSACKFSINNIVYAAQM---DHKHILKLIGCCLE----  138 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~---~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l---~h~niv~l~~~~~~----  138 (338)
                      .++|++.+.||+|+||+||+|.+   +++.||+|++..... ......+.+|+.+|+.+   +||||++++++|..    
T Consensus         6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~   85 (305)
T d1blxa_           6 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD   85 (305)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECS
T ss_pred             cCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccc
Confidence            46899999999999999999998   366799999864322 22223456777777665   79999999999853    


Q ss_pred             -CCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEe
Q 038823          139 -TPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLF  217 (338)
Q Consensus       139 -~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~  217 (338)
                       ....+++|||++++++.........    .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+
T Consensus        86 ~~~~~~~~~e~~~~~~~~~~~~~~~~----~~~~~~~~~~~~qi~~aL~yLH---~~~ivHrDiKp~NILi~~~~~~kl~  158 (305)
T d1blxa_          86 RETKLTLVFEHVDQDLTTYLDKVPEP----GVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLA  158 (305)
T ss_dssp             SEEEEEEEEECCSCBHHHHHHHSCTT----CSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEEC
T ss_pred             cCceEEEEEEeccCCchhhhhhccCC----CCCHHHHHHHHHHHHHHHHHHH---hCCEEecCCCccEEEEcCCCCeeec
Confidence             3468999999998776555444432    6899999999999999999999   8999999999999999999999999


Q ss_pred             cCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          218 DFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       218 Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      |||++.........   ....||+.|+|||++.+..++.++||||+||++|||+||++||...+
T Consensus       159 dfg~~~~~~~~~~~---~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~~  219 (305)
T d1blxa_         159 DFGLARIYSFQMAL---TSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSS  219 (305)
T ss_dssp             SCCSCCCCCGGGGG---CCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             chhhhhhhcccccC---CCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCCC
Confidence            99998765443322   56679999999999999999999999999999999999999998643

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=3.8e-47  Score=335.84  Aligned_cols=201  Identities=17%  Similarity=0.199  Sum_probs=171.6

Q ss_pred             cCCCcCCccccCCCceEEEEEE-CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEee
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW-QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY  148 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  148 (338)
                      ++|.+.+.||+|+||+||+|.+ +++.||+|++.... .....+.+.+|+.+|++++||||+++++++.+.+..+++||+
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~   81 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEe
Confidence            5788899999999999999999 78999999997653 223357899999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCCC
Q 038823          149 GEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPEG  228 (338)
Q Consensus       149 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~~  228 (338)
                      +.++.+..+.....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||.|......
T Consensus        82 ~~~~~~~~~~~~~~-----~l~~~~~~~i~~qi~~~L~~LH---~~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~  153 (286)
T d1ob3a_          82 LDQDLKKLLDVCEG-----GLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIP  153 (286)
T ss_dssp             CSEEHHHHHHTSTT-----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-
T ss_pred             ehhhhHHHHHhhcC-----CcchhhhHHHHHHHHHHHHHhc---cCcEEecCCCCceeeEcCCCCEEecccccceecccC
Confidence            99776666655443     6999999999999999999999   899999999999999999999999999999876543


Q ss_pred             CceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          229 ETHIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       229 ~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ...  .....|++.|+|||.+.+. .++.++|||||||++|||++|+.||...+
T Consensus       154 ~~~--~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~  205 (286)
T d1ob3a_         154 VRK--YTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVS  205 (286)
T ss_dssp             ----------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             ccc--cceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCC
Confidence            322  1445689999999998764 47999999999999999999999997543

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=1.5e-45  Score=326.35  Aligned_cols=202  Identities=13%  Similarity=0.102  Sum_probs=174.3

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCC-cceeeeeeeeecCCcceEEE
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDH-KHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h-~niv~l~~~~~~~~~~~lv~  146 (338)
                      .++|.+.+.||+|+||+||+|++  +|+.||+|++......   ..+.+|++.++.++| +|++.+++++.++...++||
T Consensus         4 g~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~---~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vm   80 (293)
T d1csna_           4 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDA---PQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVI   80 (293)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTS---CCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEE
T ss_pred             CCceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccCc---HHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEE
Confidence            46799999999999999999998  7899999998654332   346678888888875 89999999999999999999


Q ss_pred             eecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC-----CCceEEecCCC
Q 038823          147 EYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE-----ENVAKLFDFSE  221 (338)
Q Consensus       147 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~-----~~~~kl~Dfg~  221 (338)
                      ||+. ++|.+++.....    .+++.++..++.|++.||.|||   +.+|+||||||+|||++.     ++.+||+|||+
T Consensus        81 e~~~-~~l~~~~~~~~~----~~~~~~~~~i~~q~~~~l~~lH---~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~  152 (293)
T d1csna_          81 DLLG-PSLEDLLDLCGR----KFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGM  152 (293)
T ss_dssp             ECCC-CBHHHHHHHTTT----CCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECCSSSTTTTCEEECCCTT
T ss_pred             EecC-CCHHHHHHhhcc----chhhHHHHHHHHHHHHHHHHHH---HCCceeccCCccceeecCcccccCCceEEcccce
Confidence            9995 899999877654    6999999999999999999999   999999999999999974     57899999999


Q ss_pred             CcccCCCCce-----eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          222 SISIPEGETH-----IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       222 a~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      |+........     .......||+.|+|||.+.+..++.++|||||||++|||+||+.||.....
T Consensus       153 a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~  218 (293)
T d1csna_         153 VKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKA  218 (293)
T ss_dssp             CEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCS
T ss_pred             eEEcccCccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccc
Confidence            9876543221     122455799999999999999999999999999999999999999986554

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-45  Score=332.74  Aligned_cols=203  Identities=14%  Similarity=0.181  Sum_probs=170.6

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecCC----cce
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLETP----IPI  143 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~----~~~  143 (338)
                      +.+|.+.+.||+|+||+||+|.+  +++.||||++.........+.+.+|+.+|++++||||+++++++....    ..+
T Consensus         7 ~~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~   86 (345)
T d1pmea_           7 GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV   86 (345)
T ss_dssp             CTTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             CCCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceE
Confidence            35688999999999999999998  799999999987655566778999999999999999999999987543    235


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCc
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESI  223 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~  223 (338)
                      ++++++.+|+|.+++...      .+++..+..++.|++.||.|||   +.+|+||||||+|||+++++.+||+|||+|.
T Consensus        87 ~l~~~~~~g~L~~~l~~~------~l~~~~i~~i~~qil~al~yLH---~~~iiHRDIKp~NILl~~~~~~kl~DfG~a~  157 (345)
T d1pmea_          87 YLVTHLMGADLYKLLKTQ------HLSNDHICYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGLAR  157 (345)
T ss_dssp             EEEEECCCEEHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             EEEEeecCCchhhhhhcC------CCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCcceEEECCCCCEEEcccCcee
Confidence            556677789999999754      5999999999999999999999   8999999999999999999999999999998


Q ss_pred             ccCCCCce-eeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          224 SIPEGETH-IITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       224 ~~~~~~~~-~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ........ .......||+.|+|||.+.. ..++.++||||+||++|+|++|+.||....
T Consensus       158 ~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~  217 (345)
T d1pmea_         158 VADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKH  217 (345)
T ss_dssp             ECCGGGCBCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             eccCCCccceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCC
Confidence            76443222 11245569999999999855 457899999999999999999999997543

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-46  Score=337.43  Aligned_cols=203  Identities=18%  Similarity=0.187  Sum_probs=175.1

Q ss_pred             cCCCcCCccccCCCceEEEEEE-----CCeEEEEEEeCcCC---CchHHHHHHHHHHHHhccCC-cceeeeeeeeecCCc
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW-----QERLISVMKYNESY---SDSACKFSINNIVYAAQMDH-KHILKLIGCCLETPI  141 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~-----~~~~vaik~~~~~~---~~~~~~~~~~e~~~l~~l~h-~niv~l~~~~~~~~~  141 (338)
                      ++|++.+.||+|+||+||+|..     +|+.||+|.+....   .....+.+.+|+.++++++| |||+++++++.+.+.
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~  103 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK  103 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCc
Confidence            6699999999999999999987     47899999987532   12234568899999999976 899999999999999


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCC
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSE  221 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~  221 (338)
                      .++||||+.+|+|.+++....     .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+
T Consensus       104 ~~~v~e~~~~~~L~~~i~~~~-----~~~e~~~~~~~~Qi~~al~~lH---~~~ivHrDiKp~Nill~~~~~vkL~DFG~  175 (322)
T d1vzoa_         104 LHLILDYINGGELFTHLSQRE-----RFTEHEVQIYVGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGL  175 (322)
T ss_dssp             EEEEECCCCSCBHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEESCSSE
T ss_pred             eeeeeecccccHHHHHHHhcc-----cccHHHHHHHHHHHHHHHHHhh---cCCEEeccCCccceeecCCCCEEEeeccc
Confidence            999999999999999998765     5789999999999999999999   89999999999999999999999999999


Q ss_pred             CcccCCCCceeeeecccccCCcccccccccC--CCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          222 SISIPEGETHIITRSRFGAWTYSAPEYKRGG--VFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       222 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      ++.......... ....|++.|+|||.+.+.  .++.++|||||||+||||+||+.||.....
T Consensus       176 a~~~~~~~~~~~-~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~  237 (322)
T d1vzoa_         176 SKEFVADETERA-YDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGE  237 (322)
T ss_dssp             EEECCGGGGGGG-CGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTS
T ss_pred             hhhhcccccccc-cccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCH
Confidence            987654333222 456799999999998764  378899999999999999999999986654

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-45  Score=331.67  Aligned_cols=197  Identities=15%  Similarity=0.183  Sum_probs=167.7

Q ss_pred             hhcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCC-----
Q 038823           69 ATNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETP-----  140 (338)
Q Consensus        69 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-----  140 (338)
                      ..++|++.+.||+|+||+||+|.+  +|+.||||++.... +....+.+.+|+.+|++++|||||+++++|...+     
T Consensus        16 ~~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~   95 (346)
T d1cm8a_          16 VRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDF   95 (346)
T ss_dssp             CBSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTC
T ss_pred             cCCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCcccccc
Confidence            356899999999999999999998  78999999998653 3445678899999999999999999999997654     


Q ss_pred             -cceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecC
Q 038823          141 -IPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDF  219 (338)
Q Consensus       141 -~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Df  219 (338)
                       .+++||||+. .+|..++...      .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+||
T Consensus        96 ~~~~lv~e~~~-~~l~~~~~~~------~l~~~~~~~~~~qi~~aL~~LH---~~~IiHrDiKp~NIL~~~~~~~kl~Df  165 (346)
T d1cm8a_          96 TDFYLVMPFMG-TDLGKLMKHE------KLGEDRIQFLVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDF  165 (346)
T ss_dssp             CCCEEEEECCS-EEHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCC
T ss_pred             ceEEEEEeccc-ccHHHHHHhc------cccHHHHHHHHHHHHHHHHHHH---hCCCcccccCcchhhcccccccccccc
Confidence             4699999994 7888877543      5999999999999999999999   999999999999999999999999999


Q ss_pred             CCCcccCCCCceeeeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          220 SESISIPEGETHIITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       220 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      |+|+......     ....||+.|+|||.+.+. .++.++||||+||++|+|++|++||...
T Consensus       166 g~a~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~  222 (346)
T d1cm8a_         166 GLARQADSEM-----TGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGS  222 (346)
T ss_dssp             TTCEECCSSC-----CSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cceeccCCcc-----ccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCC
Confidence            9998765443     456799999999998764 5789999999999999999999999754

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-45  Score=335.26  Aligned_cols=195  Identities=24%  Similarity=0.292  Sum_probs=163.1

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcceeeeeeeeecC------Ccce
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHILKLIGCCLET------PIPI  143 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~------~~~~  143 (338)
                      +|+..++||+|+||+||+|++  +++.||||++.....     ...+|+.+|++++|+||+++++++...      ...+
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~-----~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~   95 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR-----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN   95 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS-----SCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEE
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccch-----HHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEE
Confidence            588889999999999999999  789999999976422     234799999999999999999998543      2468


Q ss_pred             EEEeecCCCCHHHhhh--cCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC-ceEEecCC
Q 038823          144 LVFEYGEYTTLRDRIF--GAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN-VAKLFDFS  220 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~--~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~-~~kl~Dfg  220 (338)
                      +||||++++.+..+..  ...    ..+++..+..++.||+.||.|||   +.+|+||||||+|||++.++ .+||+|||
T Consensus        96 lv~Ey~~~~~~~~l~~~~~~~----~~l~~~~~~~i~~qil~aL~yLH---~~~IiHrDiKp~NILl~~~~~~~kl~DFG  168 (350)
T d1q5ka_          96 LVLDYVPETVYRVARHYSRAK----QTLPVIYVKLYMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFG  168 (350)
T ss_dssp             EEEECCSEEHHHHHHHHHHTT----CCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTTCCEEECCCT
T ss_pred             EEEeccCCccHHHHHhhhhcc----CCCCHHHHHHHHHHHHHHHHHHH---hcCCcccCCCcceEEEecCCCceeEeccc
Confidence            9999999654333322  122    26999999999999999999999   99999999999999999775 89999999


Q ss_pred             CCcccCCCCceeeeecccccCCccccccccc-CCCCccchHHHHHHHHHHHHhCCCCcCCcc
Q 038823          221 ESISIPEGETHIITRSRFGAWTYSAPEYKRG-GVFNEKLDVYTFSTVLLELLTGQSTRDLLR  281 (338)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~  281 (338)
                      ++.........   ....||..|+|||.+.+ ..++.++||||+||++|||++|+.||....
T Consensus       169 ~a~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~  227 (350)
T d1q5ka_         169 SAKQLVRGEPN---VSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDS  227 (350)
T ss_dssp             TCEECCTTSCC---CSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSS
T ss_pred             chhhccCCccc---ccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCC
Confidence            99877554332   45679999999998765 468999999999999999999999997543

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-45  Score=328.00  Aligned_cols=202  Identities=17%  Similarity=0.206  Sum_probs=166.5

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeec--------C
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLE--------T  139 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--------~  139 (338)
                      ++|++.+.||+|+||+||+|.+  +|+.||||++.... .......+.+|+.+|++++|+||+++++++..        .
T Consensus        10 ~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~~   89 (318)
T d3blha1          10 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCK   89 (318)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC---------
T ss_pred             CCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeecccccccccC
Confidence            6789999999999999999998  78999999986543 23344678899999999999999999999865        3


Q ss_pred             CcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecC
Q 038823          140 PIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDF  219 (338)
Q Consensus       140 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Df  219 (338)
                      +..++||||+.++.+........     .+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+||
T Consensus        90 ~~~~iv~e~~~~~~~~~~~~~~~-----~~~~~~~~~i~~qil~~l~~lH---~~~ivHrDlKp~NILl~~~~~~kl~df  161 (318)
T d3blha1          90 GSIYLVFDFCEHDLAGLLSNVLV-----KFTLSEIKRVMQMLLNGLYYIH---RNKILHRDMKAANVLITRDGVLKLADF  161 (318)
T ss_dssp             -CEEEEEECCCEEHHHHHTCTTC-----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCC
T ss_pred             ceEEEEEeccCCCccchhhhccc-----ccccHHHHHHHHHHHHHHHHhc---cCCEEecCcCchheeecCCCcEEeeec
Confidence            45799999999766654443332     6899999999999999999999   899999999999999999999999999


Q ss_pred             CCCcccCCCCcee--eeecccccCCcccccccccC-CCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          220 SESISIPEGETHI--ITRSRFGAWTYSAPEYKRGG-VFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       220 g~a~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      |++..........  ......||+.|+|||.+.+. .++.++|||||||++|||+||+.||...
T Consensus       162 g~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~  225 (318)
T d3blha1         162 GLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGN  225 (318)
T ss_dssp             TTCEECCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ceeeecccccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCC
Confidence            9997765433221  11345699999999998765 5899999999999999999999999754

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.9e-45  Score=323.26  Aligned_cols=245  Identities=14%  Similarity=0.104  Sum_probs=185.4

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCccee-eeeeeeecCCcceEEEe
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHIL-KLIGCCLETPIPILVFE  147 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv-~l~~~~~~~~~~~lv~e  147 (338)
                      ++|++.+.||+|+||+||+|.+  +|+.||||++......   ..+..|+++++.++|+|++ .+.++..+.+..++|||
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~---~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme   83 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH---PQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME   83 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTTS---CCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhccC---HHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEE
Confidence            5699999999999999999998  7899999998754322   3477899999999876655 55556677888999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCC---CCceEEecCCCCcc
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNE---ENVAKLFDFSESIS  224 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~---~~~~kl~Dfg~a~~  224 (338)
                      |+. ++|.+.+.....    .+++..+..++.|++.||.|||   +++|+||||||+|||++.   +..+||+|||+|+.
T Consensus        84 ~~~-~~l~~~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH---~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~  155 (299)
T d1ckia_          84 LLG-PSLEDLFNFCSR----KFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKK  155 (299)
T ss_dssp             CCC-CBHHHHHHHTTT----CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEE
T ss_pred             EcC-CchhhhhhhccC----CCcHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHhhccccccCCCceeeeeccCccee
Confidence            996 677777665543    6999999999999999999999   899999999999998763   45799999999988


Q ss_pred             cCCCCce-----eeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccCCcccccHHHHHHHHHhc
Q 038823          225 IPEGETH-----IITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRTHGSVRHLIEYLKNYLQN  299 (338)
Q Consensus       225 ~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~~~~~~~l~~~~~~~~~~  299 (338)
                      .......     .......||+.|+|||.+.+..++.++|||||||++|||+||+.||......................
T Consensus       156 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~~~~  235 (299)
T d1ckia_         156 YRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMST  235 (299)
T ss_dssp             CBCTTTCCBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHHHHHS
T ss_pred             ccccccccceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcccCCC
Confidence            7654322     12245579999999999999999999999999999999999999998655533333232222211110


Q ss_pred             ----------CccccccccccccCcCCcccHHHHHHH
Q 038823          300 ----------NRFTEIADPIIVQDLSCTETEHQFQAC  326 (338)
Q Consensus       300 ----------~~~~~~~d~~l~~~~~~~~~~~~~~~~  326 (338)
                                ..+.+++..++..+|.+|++..++.++
T Consensus       236 ~~~~~~~~~p~~~~~li~~cl~~~p~~RP~~~~i~~~  272 (299)
T d1ckia_         236 PIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQL  272 (299)
T ss_dssp             CHHHHTTTSCHHHHHHHHHHHHSCTTCCCCHHHHHHH
T ss_pred             ChhHhccCCCHHHHHHHHHHccCChhHCcCHHHHHHH
Confidence                      123455666666666666665554443

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.7e-45  Score=321.49  Aligned_cols=199  Identities=14%  Similarity=0.180  Sum_probs=175.9

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecCCcceEEEe
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLETPIPILVFE  147 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  147 (338)
                      ++|++.+.||+|+||+||+|++  +++.||||+++... .......+.+|+.+|++++||||+++++++.+.+..++|+|
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~   81 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEee
Confidence            4688899999999999999999  78899999996553 33456789999999999999999999999999999999999


Q ss_pred             ecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCCCcccCC
Q 038823          148 YGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSESISIPE  227 (338)
Q Consensus       148 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~~  227 (338)
                      ++.+++|..++....     .+++..+..++.|++.||+|||   ..+|+||||||+|||++.++.+||+|||.|.....
T Consensus        82 ~~~~~~l~~~~~~~~-----~~~~~~~~~~~~q~~~aL~~lH---~~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~  153 (292)
T d1unla_          82 FCDQDLKKYFDSCNG-----DLDPEIVKSFLFQLLKGLGFCH---SRNVLHRDLKPQNLLINRNGELKLANFGLARAFGI  153 (292)
T ss_dssp             CCSEEHHHHHHHTTT-----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCS
T ss_pred             ecccccccccccccc-----ccchhHHHHHHHHHHHHHHHhh---cCCEeeecccCcccccccCCceeeeecchhhcccC
Confidence            999999988877654     6899999999999999999999   89999999999999999999999999999987765


Q ss_pred             CCceeeeecccccCCcccccccccCC-CCccchHHHHHHHHHHHHhCCCCcCC
Q 038823          228 GETHIITRSRFGAWTYSAPEYKRGGV-FNEKLDVYTFSTVLLELLTGQSTRDL  279 (338)
Q Consensus       228 ~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~s~Gv~l~el~tG~~p~~~  279 (338)
                      .....  ....++..|+|||.+.... ++.++|||||||++|||++|+.||..
T Consensus       154 ~~~~~--~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~  204 (292)
T d1unla_         154 PVRCY--SAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFP  204 (292)
T ss_dssp             CCSCC--CSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCC
T ss_pred             CCccc--eeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCC
Confidence            43321  3445788899999887665 69999999999999999999999754

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=6.8e-44  Score=320.87  Aligned_cols=194  Identities=15%  Similarity=0.188  Sum_probs=168.9

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-Ccceeeeeeeeec--CCcceEE
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCLE--TPIPILV  145 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~--~~~~~lv  145 (338)
                      ++|.+.+.||+|+||+||+|++  +++.||+|+++..    ..+.+.+|+.+|++++ ||||+++++++..  ....++|
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~----~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v  110 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV----KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV  110 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSS----CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEE
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHH----HHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEE
Confidence            5799999999999999999998  7999999999754    2356889999999996 9999999999874  4568999


Q ss_pred             EeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCC-ceEEecCCCCcc
Q 038823          146 FEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEEN-VAKLFDFSESIS  224 (338)
Q Consensus       146 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~-~~kl~Dfg~a~~  224 (338)
                      |||+.+++|..+.        ..+++..+..++.||+.||.|||   +.+|+||||||+|||++.++ .+||+|||+|+.
T Consensus       111 ~e~~~~~~L~~~~--------~~l~e~~i~~i~~qil~aL~~LH---~~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~  179 (328)
T d3bqca1         111 FEHVNNTDFKQLY--------QTLTDYDIRFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEF  179 (328)
T ss_dssp             EECCCSCBGGGTT--------TSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCGGGCEE
T ss_pred             EeecCCCcHHHHh--------cCCCHHHHHHHHHHHHHHHHHHh---hcccccccccccceEEcCCCCeeeeccccccee
Confidence            9999999997764        25899999999999999999999   99999999999999998655 699999999987


Q ss_pred             cCCCCceeeeecccccCCcccccccccCC-CCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          225 IPEGETHIITRSRFGAWTYSAPEYKRGGV-FNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       225 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                      .......   ....+|+.|+|||.+.+.. ++.++||||+||++|||++|+.||.....
T Consensus       180 ~~~~~~~---~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~  235 (328)
T d3bqca1         180 YHPGQEY---NVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHD  235 (328)
T ss_dssp             CCTTCCC---CSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSS
T ss_pred             ccCCCcc---cccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCch
Confidence            6554332   5567899999999987654 79999999999999999999999975443

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-43  Score=321.85  Aligned_cols=196  Identities=17%  Similarity=0.194  Sum_probs=161.1

Q ss_pred             cCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeec------CCc
Q 038823           71 NNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLE------TPI  141 (338)
Q Consensus        71 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~------~~~  141 (338)
                      ++|.+.+.||+|+||+||+|.+  +|+.||||++.... +......+.+|+.+|++++||||+++++++..      .+.
T Consensus        17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~   96 (355)
T d2b1pa1          17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQD   96 (355)
T ss_dssp             TTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCE
T ss_pred             CCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCce
Confidence            5799999999999999999999  79999999997654 34456678999999999999999999999964      357


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCC
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSE  221 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~  221 (338)
                      +|+||||+.+ ++.+.+..       .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+|++|||+
T Consensus        97 ~~iv~Ey~~~-~l~~~~~~-------~~~~~~i~~~~~qil~gl~~LH---~~giiHrDlKP~Nil~~~~~~~kl~df~~  165 (355)
T d2b1pa1          97 VYLVMELMDA-NLCQVIQM-------ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGL  165 (355)
T ss_dssp             EEEEEECCSE-EHHHHHTS-------CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCCCC
T ss_pred             eEEEEeccch-HHHHhhhc-------CCCHHHHHHHHHHHHHHHHHhh---hcccccccCCccccccccccceeeechhh
Confidence            8999999985 55555532       5899999999999999999999   89999999999999999999999999999


Q ss_pred             CcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          222 SISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       222 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      ++........   ....+|+.|+|||.+.+..++.++||||+||++|+|++|+.||...
T Consensus       166 ~~~~~~~~~~---~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~  221 (355)
T d2b1pa1         166 ARTAGTSFMM---TPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGR  221 (355)
T ss_dssp             ------------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             hhcccccccc---ccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCC
Confidence            8776554322   5557899999999999999999999999999999999999999754

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-43  Score=321.03  Aligned_cols=197  Identities=17%  Similarity=0.217  Sum_probs=168.3

Q ss_pred             hcCCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCC-CchHHHHHHHHHHHHhccCCcceeeeeeeeecC-----Cc
Q 038823           70 TNNYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESY-SDSACKFSINNIVYAAQMDHKHILKLIGCCLET-----PI  141 (338)
Q Consensus        70 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~  141 (338)
                      +++|++.+.||+|+||+||+|.+  +|+.||||++.... +....+.+.+|+.+|++++|||||++++++...     ..
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~   96 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN   96 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCC
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCc
Confidence            56799999999999999999998  79999999998654 344567789999999999999999999998643     33


Q ss_pred             ceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceEEecCCC
Q 038823          142 PILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAKLFDFSE  221 (338)
Q Consensus       142 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~  221 (338)
                      .+++++|+.+|+|.+++...      .+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+|++|||+
T Consensus        97 ~~~i~~~~~gg~L~~~~~~~------~l~e~~~~~i~~qil~aL~~LH---~~giiHrDiKp~NILi~~~~~~kl~dfg~  167 (348)
T d2gfsa1          97 DVYLVTHLMGADLNNIVKCQ------KLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGL  167 (348)
T ss_dssp             CCEEEEECCSEEHHHHHTTC------CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCC--
T ss_pred             eEEEEEeecCCchhhhcccc------cccHHHHHHHHHHHHHHHHHHH---hCCCcccccCCccccccccccccccccch
Confidence            46777888899999998543      5999999999999999999999   89999999999999999999999999999


Q ss_pred             CcccCCCCceeeeecccccCCcccccccccCC-CCccchHHHHHHHHHHHHhCCCCcCCc
Q 038823          222 SISIPEGETHIITRSRFGAWTYSAPEYKRGGV-FNEKLDVYTFSTVLLELLTGQSTRDLL  280 (338)
Q Consensus       222 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~s~Gv~l~el~tG~~p~~~~  280 (338)
                      +.......     ....||..|+|||...+.. ++.++|||||||++|+|++|+.||...
T Consensus       168 a~~~~~~~-----~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~  222 (348)
T d2gfsa1         168 ARHTDDEM-----TGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT  222 (348)
T ss_dssp             --CCTGGG-----SSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             hcccCccc-----ccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCC
Confidence            87654332     4556899999999876654 689999999999999999999999754

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.2e-38  Score=284.65  Aligned_cols=199  Identities=14%  Similarity=0.126  Sum_probs=157.9

Q ss_pred             CCCcCCccccCCCceEEEEEE--CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-----------Ccceeeeeeeeec
Q 038823           72 NYDERKFIKQDSTYKLYKGFW--QERLISVMKYNESYSDSACKFSINNIVYAAQMD-----------HKHILKLIGCCLE  138 (338)
Q Consensus        72 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-----------h~niv~l~~~~~~  138 (338)
                      +|++.+.||+|+||+||+|++  +|+.||||++...  ....+.+.+|+.+++.++           |+||+++++++..
T Consensus        14 rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~--~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~   91 (362)
T d1q8ya_          14 RYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD--KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH   91 (362)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC--HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred             cEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEecc--ccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeee
Confidence            489999999999999999998  7999999999754  233466788999888875           5789999998864


Q ss_pred             --CCcceEEEeecCCCCHH-HhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCc--
Q 038823          139 --TPIPILVFEYGEYTTLR-DRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENV--  213 (338)
Q Consensus       139 --~~~~~lv~e~~~~gsL~-~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~--  213 (338)
                        ....+++++++..+... ........   ..+++..+..++.||+.||.|||+  ..+|+||||||+|||++.++.  
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~i~~qil~al~~lh~--~~~IvHrDlKp~NIll~~~~~~~  166 (362)
T d1q8ya_          92 KGPNGVHVVMVFEVLGENLLALIKKYEH---RGIPLIYVKQISKQLLLGLDYMHR--RCGIIHTDIKPENVLMEIVDSPE  166 (362)
T ss_dssp             EETTEEEEEEEECCCCEEHHHHHHHTTT---SCCCHHHHHHHHHHHHHHHHHHHH--TTCEECSCCSGGGEEEEEEETTT
T ss_pred             ccccceeeeeeecccccccccccccccc---cCCcHHHHHHHHHHHHHHHHHHhh--hcCcccccCChhHeeeeccCccc
Confidence              34556677766544432 22222221   368999999999999999999993  389999999999999986653  


Q ss_pred             ----eEEecCCCCcccCCCCceeeeecccccCCcccccccccCCCCccchHHHHHHHHHHHHhCCCCcCCccC
Q 038823          214 ----AKLFDFSESISIPEGETHIITRSRFGAWTYSAPEYKRGGVFNEKLDVYTFSTVLLELLTGQSTRDLLRT  282 (338)
Q Consensus       214 ----~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv~l~el~tG~~p~~~~~~  282 (338)
                          ++++|||.|.......     ....||+.|+|||.+....++.++||||+||++++|++|+.||.....
T Consensus       167 ~~~~~kl~dfg~s~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~  234 (362)
T d1q8ya_         167 NLIQIKIADLGNACWYDEHY-----TNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEG  234 (362)
T ss_dssp             TEEEEEECCCTTCEETTBCC-----CSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC-----
T ss_pred             ccceeeEeeccccccccccc-----ccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCCcc
Confidence                9999999987654332     455799999999999999999999999999999999999999975443

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.92  E-value=3.2e-26  Score=188.83  Aligned_cols=163  Identities=15%  Similarity=0.110  Sum_probs=120.6

Q ss_pred             CcCCccccCCCceEEEEEE-CCeEEEEEEeCcCCC-----------------chHHHHHHHHHHHHhccCCcceeeeeee
Q 038823           74 DERKFIKQDSTYKLYKGFW-QERLISVMKYNESYS-----------------DSACKFSINNIVYAAQMDHKHILKLIGC  135 (338)
Q Consensus        74 ~~~~~lg~G~~g~Vy~~~~-~~~~vaik~~~~~~~-----------------~~~~~~~~~e~~~l~~l~h~niv~l~~~  135 (338)
                      .+.+.||+|+||+||+|.+ +|+.||||++.....                 ........+|...+.++.|.+++..+++
T Consensus         3 ~vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~   82 (191)
T d1zara2           3 AIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAW   82 (191)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEE
T ss_pred             hhCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEe
Confidence            4568899999999999998 889999998753211                 0112345578889999999999998876


Q ss_pred             eecCCcceEEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCCceeeCCCCceE
Q 038823          136 CLETPIPILVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGFPRPIVFGNLISLCILFNEENVAK  215 (338)
Q Consensus       136 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iiH~dik~~Nill~~~~~~k  215 (338)
                      .    ..+++|||+++..+.+            ++......++.|++.||.|||   ..+|+||||||+|||++++ .++
T Consensus        83 ~----~~~lvme~~~~~~~~~------------l~~~~~~~i~~ql~~~l~~lH---~~giiHrDiKP~NILv~~~-~~~  142 (191)
T d1zara2          83 E----GNAVLMELIDAKELYR------------VRVENPDEVLDMILEEVAKFY---HRGIVHGDLSQYNVLVSEE-GIW  142 (191)
T ss_dssp             E----TTEEEEECCCCEEGGG------------CCCSCHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEETT-EEE
T ss_pred             c----CCEEEEEeeccccccc------------hhhHHHHHHHHHHHHHHHHHh---hCCEEEccCChhheeeeCC-CEE
Confidence            3    2479999999765533            333445679999999999999   8999999999999999865 589


Q ss_pred             EecCCCCcccCCCCceeeeecccccCCccc------ccccccCCCCccchHHHHHHHH
Q 038823          216 LFDFSESISIPEGETHIITRSRFGAWTYSA------PEYKRGGVFNEKLDVYTFSTVL  267 (338)
Q Consensus       216 l~Dfg~a~~~~~~~~~~~~~~~~gt~~y~a------PE~~~~~~~~~~~Dv~s~Gv~l  267 (338)
                      |+|||.|.....+...          .|..      .+.+ ...|+.++|+||..--+
T Consensus       143 liDFG~a~~~~~~~~~----------~~l~rd~~~~~~~f-~r~y~~~~d~~s~~~~~  189 (191)
T d1zara2         143 IIDFPQSVEVGEEGWR----------EILERDVRNIITYF-SRTYRTEKDINSAIDRI  189 (191)
T ss_dssp             ECCCTTCEETTSTTHH----------HHHHHHHHHHHHHH-HHHHCCCCCHHHHHHHH
T ss_pred             EEECCCcccCCCCCcH----------HHHHHHHHHHHHHH-cCCCCCcccHHHHHHHH
Confidence            9999999776544321          1111      1122 34578889999976443

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.81  E-value=7.6e-09  Score=87.43  Aligned_cols=149  Identities=13%  Similarity=0.042  Sum_probs=102.6

Q ss_pred             HHHHhhcCCCcCCccccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-CcceeeeeeeeecCCcce
Q 038823           65 ELEIATNNYDERKFIKQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCLETPIPI  143 (338)
Q Consensus        65 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~  143 (338)
                      ++.+.-..|...+..+.++.+.||+...+++.+.+|+....... ....+.+|...+..+. +--+.+++.++.+++..+
T Consensus         8 ~l~~~~~~~~~~~~~~G~s~~~v~rv~~~~~~~vlk~~~~~~~~-~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~~   86 (263)
T d1j7la_           8 ELKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLKMTDSRYKG-TTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSN   86 (263)
T ss_dssp             HHHHHHTTSEEEECSCCCSSSEEEEEECSSCEEEEEEECGGGTT-STTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEE
T ss_pred             HHHHhhhceEEEEcCCCCCCCcEEEEEeCCCeEEEEEcCCCccc-chhhHHHHHHHHHHHhccCCCCcEEEEEecCCceE
Confidence            55555566665554444555789998878888889988654221 1234667888877774 434677888888888899


Q ss_pred             EEEeecCCCCHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC-------------------------------
Q 038823          144 LVFEYGEYTTLRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVGF-------------------------------  192 (338)
Q Consensus       144 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~-------------------------------  192 (338)
                      +||++++|.++.+.....       .   ....++.+++..+..||+..                               
T Consensus        87 lv~~~l~G~~~~~~~~~~-------~---~~~~~~~~l~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (263)
T d1j7la_          87 LLMSEADGVLCSEEYEDE-------Q---SPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCE  156 (263)
T ss_dssp             EEEECCSSEEHHHHTTTC-------S---CHHHHHHHHHHHHHHHHTSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCCGG
T ss_pred             EEEEeccccccccccccc-------c---cHHHHHHHHHHHHHHHhccCccccccCcchhhhhhhHHHHHHHHhhhhhhh
Confidence            999999998887654221       1   22335566666677776321                               


Q ss_pred             -------------------------CCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          193 -------------------------PRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       193 -------------------------~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                                               ...++|+|+.|.||++++++.+-|+||+.+..
T Consensus       157 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDwe~a~~  213 (263)
T d1j7la_         157 NWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR  213 (263)
T ss_dssp             GGSTTCSCSSHHHHHHHHHHSCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             cccccccchHHHHHHHHHHhcCCcCCcEEEEeeccCcceeecCCceEEEeechhccc
Confidence                                     11379999999999999876678999987654

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=98.18  E-value=1.4e-06  Score=72.73  Aligned_cols=130  Identities=9%  Similarity=-0.049  Sum_probs=84.5

Q ss_pred             ccccCCC-ceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccC--CcceeeeeeeeecCCcceEEEeecCCCC
Q 038823           78 FIKQDST-YKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMD--HKHILKLIGCCLETPIPILVFEYGEYTT  153 (338)
Q Consensus        78 ~lg~G~~-g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~--h~niv~l~~~~~~~~~~~lv~e~~~~gs  153 (338)
                      .+..|.. +.||+... ++..+.+|.......    ..+..|...++.+.  .-.+.++++++.+++..++||++++|.+
T Consensus        17 ~~~~G~s~~~v~r~~~~~~~~~vlK~~~~~~~----~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~G~~   92 (255)
T d1nd4a_          17 QQTIGCSDAAVFRLSAQGRPVLFVKTDLSGAL----NELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQD   92 (255)
T ss_dssp             ECSCTTSSCEEEEEECTTSCCEEEEEECSCTT----SCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEE
T ss_pred             EcCCcccCCeEEEEEeCCCCEEEEEeCCccCH----hHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeeeccc
Confidence            3445553 67899988 555677887654422    23566777777664  3336778888888888999999999766


Q ss_pred             HHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC------------------------------------------
Q 038823          154 LRDRIFGAPQPHFEPLLLKHRLKVAMGIAHALAYLHVG------------------------------------------  191 (338)
Q Consensus       154 L~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~------------------------------------------  191 (338)
                      +.+.          .....   ..+.++...|.-||..                                          
T Consensus        93 ~~~~----------~~~~~---~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (255)
T d1nd4a_          93 LLSS----------HLAPA---EKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPA  159 (255)
T ss_dssp             TTTS----------CCCHH---HHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHH
T ss_pred             cccc----------cccHH---HHHHHHHHHHHHHccCChhhCCCcccchhhHHHHHHHHHHhhhccccccchhhhhHHH
Confidence            5331          11111   1223444444444421                                          


Q ss_pred             -------------CCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          192 -------------FPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       192 -------------~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                                   ....++|+|+.|.||+++.+..+-|+||+.+..
T Consensus       160 ~~~~~l~~~~~~~~~~~liHgD~~~~Nvl~~~~~~~~iID~~~~~~  205 (255)
T d1nd4a_         160 ELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV  205 (255)
T ss_dssp             HHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             HHHHHHHHhCCccCCceEEeCCCCCcceEEeCCceEEEEEchhccc
Confidence                         112479999999999999876778999987643

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=97.96  E-value=1.9e-05  Score=70.23  Aligned_cols=76  Identities=8%  Similarity=-0.016  Sum_probs=49.2

Q ss_pred             CccccCCCceEEEEEE--CCeEEEEEEeCcCC------CchHHHHHHHHHHHHhccC-C--cceeeeeeeeecCCcceEE
Q 038823           77 KFIKQDSTYKLYKGFW--QERLISVMKYNESY------SDSACKFSINNIVYAAQMD-H--KHILKLIGCCLETPIPILV  145 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~--~~~~vaik~~~~~~------~~~~~~~~~~e~~~l~~l~-h--~niv~l~~~~~~~~~~~lv  145 (338)
                      +.||.|....||+...  +++.+++|.-....      -.....+...|...|+.+. +  ..+++++.+.  .+..++|
T Consensus        32 ~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~d--~~~~~lv  109 (392)
T d2pula1          32 QEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYSD--TEMAVTV  109 (392)
T ss_dssp             EECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEEE--TTTTEEE
T ss_pred             EEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEEc--CCCCEEE
Confidence            4689999999999987  46688888754311      1112234556888777663 2  4566676654  4456899


Q ss_pred             EeecCCCCH
Q 038823          146 FEYGEYTTL  154 (338)
Q Consensus       146 ~e~~~~gsL  154 (338)
                      ||++++..+
T Consensus       110 mE~L~~~~~  118 (392)
T d2pula1         110 MEDLSHLKI  118 (392)
T ss_dssp             ECCCTTSEE
T ss_pred             EeccCCccc
Confidence            999986543

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.27  E-value=0.00047  Score=58.74  Aligned_cols=161  Identities=13%  Similarity=0.078  Sum_probs=84.5

Q ss_pred             cCHHHHHHhhcCCCcCCcc-----ccCCCceEEEEEECCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCcce--eeee
Q 038823           61 FSAKELEIATNNYDERKFI-----KQDSTYKLYKGFWQERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHI--LKLI  133 (338)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~l-----g~G~~g~Vy~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~ni--v~l~  133 (338)
                      .+.+|++....+|.+.++.     ..|.--+.|+...++..+++|++....+..   ....|+.++..|...++  +..+
T Consensus         3 ls~~el~~~l~~Y~lg~~~~~~~i~~G~~N~ny~v~t~~g~yVLri~~~~~~~~---~l~~~~~~l~~L~~~g~pvp~pi   79 (316)
T d2ppqa1           3 ITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKDPLILTLYEKRVEKN---DLPFFLGLMQHLAAKGLSCPLPL   79 (316)
T ss_dssp             CCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSCCEEEEEECC---CC---HHHHHHHHHHHHHHTTCCCCCBC
T ss_pred             CCHHHHHHHHHhCCCCCceEeecCCCCcccCeEEEEECCCcEEEEEcCCCCCHH---HHHHHHHHHHhhhhccccccccc
Confidence            5678888888889876554     356567889998877789999987543333   23345556666542222  1111


Q ss_pred             ee------eecCCcceEEEeecCCCCHHH--------------hhh----cCCCCCCCCCCH------------------
Q 038823          134 GC------CLETPIPILVFEYGEYTTLRD--------------RIF----GAPQPHFEPLLL------------------  171 (338)
Q Consensus       134 ~~------~~~~~~~~lv~e~~~~gsL~~--------------~l~----~~~~~~~~~l~~------------------  171 (338)
                      ..      ..-......++.+..+.....              .+.    ............                  
T Consensus        80 ~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (316)
T d2ppqa1          80 PRKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVE  159 (316)
T ss_dssp             CBTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTS
T ss_pred             eecCCCcceeeecccceeeeecccccccccchhHHHHHHHHHHhhhhhhhhcccccccccchhhcchhhhHHHHhhhhcc
Confidence            11      111334556666666433211              000    000000000000                  


Q ss_pred             HHHHHHHHHHHHHHHHhhc-CCCCCeeecCCCCCceeeCCCCceEEecCCCCcc
Q 038823          172 KHRLKVAMGIAHALAYLHV-GFPRPIVFGNLISLCILFNEENVAKLFDFSESIS  224 (338)
Q Consensus       172 ~~~~~i~~~i~~~l~~LH~-~~~~~iiH~dik~~Nill~~~~~~kl~Dfg~a~~  224 (338)
                      ......+......+.-.+. .-+.++||+|+.+.||+++.+...-|.||+.+..
T Consensus       160 ~~~~~~l~~~~~~~~~~~~~~L~~giIHgDl~~dNvl~~~~~v~gvIDF~~~~~  213 (316)
T d2ppqa1         160 KGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFACN  213 (316)
T ss_dssp             TTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             hhHHHHHHHHHHhhhccCccccccccccCCcchhhhhcccccceeEeccccccc
Confidence            0111222222222222221 1256899999999999999888789999998754

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.0012  Score=56.44  Aligned_cols=139  Identities=14%  Similarity=0.065  Sum_probs=76.9

Q ss_pred             CceEEEEEE-CCeEEEEEEeCcCCCchHHHHHHHHHHHHhccCCccee--eeee-----eeecCCcceEEEeecCCCCHH
Q 038823           84 TYKLYKGFW-QERLISVMKYNESYSDSACKFSINNIVYAAQMDHKHIL--KLIG-----CCLETPIPILVFEYGEYTTLR  155 (338)
Q Consensus        84 ~g~Vy~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~niv--~l~~-----~~~~~~~~~lv~e~~~~gsL~  155 (338)
                      --.||+... +|..+++|........  .+.+..|...+..|...++.  ..+.     .....+..+.++++++|..+.
T Consensus        35 EN~vy~v~~~dg~~~VlK~~rp~~~s--~~~i~~E~~~l~~L~~~gipv~~p~~~~g~~~~~~~~~~~~l~~~~~G~~~~  112 (325)
T d1zyla1          35 ENRVYQFQDEDRRRFVVKFYRPERWT--ADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGRQFE  112 (325)
T ss_dssp             SSEEEEECCTTCCCEEEEEECTTTSC--HHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCCCEECC
T ss_pred             cceeEEEEcCCCCEEEEEEeCCCCCC--HHHHHHHHHHHHHHHhcCCCCCCceecCCCeeeeeeeEEEEEEeecCCcCCC
Confidence            358999998 7888999998765322  24566788888777533321  1111     112345578899998863321


Q ss_pred             H------------------hhhcCCCCCCCCCCHH----------------------HHHHHHHHHHHHHHHh-hcCCCC
Q 038823          156 D------------------RIFGAPQPHFEPLLLK----------------------HRLKVAMGIAHALAYL-HVGFPR  194 (338)
Q Consensus       156 ~------------------~l~~~~~~~~~~l~~~----------------------~~~~i~~~i~~~l~~L-H~~~~~  194 (338)
                      .                  ............+++.                      .....+..+...+.-+ ......
T Consensus       113 ~~~~~~~~~lG~~LA~lH~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~  192 (325)
T d1zyla1         113 ADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHWREDFTV  192 (325)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHHHHCCSCSCC
T ss_pred             CCCHHHHHHHHHHHHHHHhhcccCCccccCCCCHHHHhhhhHHHHHHcCcCCHHHHHHHHHHHHHHHHHHHHhccccCCc
Confidence            1                  1111111111112211                      1222233333333222 122346


Q ss_pred             CeeecCCCCCceeeCCCCceEEecCCCCcccC
Q 038823          195 PIVFGNLISLCILFNEENVAKLFDFSESISIP  226 (338)
Q Consensus       195 ~iiH~dik~~Nill~~~~~~kl~Dfg~a~~~~  226 (338)
                      ++||+|+.+.|||++++  ..++||+-+....
T Consensus       193 ~liHgDlh~~NvL~~~~--~~~IDFdd~~~g~  222 (325)
T d1zyla1         193 LRLHGDCHAGNILWRDG--PMFVDLDDARNGP  222 (325)
T ss_dssp             EECCSSCSGGGEEESSS--EEECCCTTCCEEC
T ss_pred             eeecCCCCcccEEEeCC--ceEEechhcccCc
Confidence            79999999999999743  4589999876543

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.88  E-value=0.0015  Score=57.48  Aligned_cols=71  Identities=15%  Similarity=0.033  Sum_probs=47.9

Q ss_pred             CccccCCCceEEEEEEC---------CeEEEEEEeCcCCCchHHHHHHHHHHHHhccC-CcceeeeeeeeecCCcceEEE
Q 038823           77 KFIKQDSTYKLYKGFWQ---------ERLISVMKYNESYSDSACKFSINNIVYAAQMD-HKHILKLIGCCLETPIPILVF  146 (338)
Q Consensus        77 ~~lg~G~~g~Vy~~~~~---------~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~  146 (338)
                      +.|+.|-.-.+|+....         ...|.+++......  . ....+|..+++.+. +.-.+++++++.+    .+|+
T Consensus        48 ~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g~~~~--~-idr~~E~~i~~~ls~~gl~Pkll~~~~~----g~I~  120 (395)
T d1nw1a_          48 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPET--E-SHLVAESVIFTLLSERHLGPKLYGIFSG----GRLE  120 (395)
T ss_dssp             EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCCC--H-HHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEE
T ss_pred             EEcCCccccceEEEEeCCCCccccCCCCcEEEEecCCcch--h-hHHHHHHHHHHHHHhCCCCCeEEEEcCC----ceEE
Confidence            56788888899999872         24566777653222  2 34567888888886 4334577777753    5899


Q ss_pred             eecCCCCH
Q 038823          147 EYGEYTTL  154 (338)
Q Consensus       147 e~~~~gsL  154 (338)
                      ||++|.+|
T Consensus       121 efi~g~~l  128 (395)
T d1nw1a_         121 EYIPSRPL  128 (395)
T ss_dssp             CCCCEEEC
T ss_pred             EEeccccC
Confidence            99986444