Citrus Sinensis ID: 038824

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
MGRPPCCDKLNVKKGLRRCGKSCRLRWTNYLRPDLKHESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRKKLTEMGIDPVTHKPFSQILADYGNIGGLPKSGTRIGCLNRDMSKNAFMMQKPEQHESPFQVFSNISSHLMTMVSPNVEPIKDTLLNHYNDHSNSMDLLAQLQA
cccccccccHHHHHHHHHccccHHHHcccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccHHHHHHHcc
ccccccHHHccHHHcHHccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHcccccHHHHcccccccccccHHHHHHcccccccccccHHccccccccHcHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHccc
mgrppccdklnvkkglrrcgkscrlrwtnylrpdlkhesftpqEEEMIIRLHAAIGSRWSIIaqqlpgrtdndvknYWNTKLRKKLTemgidpvthkpfsQILAdygnigglpksgtrigclnrdmsknafmmqkpeqhespfqvFSNISSHLmtmvspnvepiKDTLLNHYNDHSNSMDLLAQLQA
mgrppccdklnvkkglrrcgkscrlrwtnylrpdlkhesftpQEEEMIIRLHAAIGSRWSIIAQqlpgrtdndvknYWNTKLRKKLTEMGIDPVTHKPFSQILADYGNIGGLPKSGTRIGCLNRDMSKNAFMMQKPEQHESPFQVFSNISSHLMTMVSPNVEPIKDTLLNHYNDHSNSMDLLAQLQA
MGRPPCCDKLNVKKGLRRCGKSCRLRWTNYLRPDLKHESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRKKLTEMGIDPVTHKPFSQILADYGNIGGLPKSGTRIGCLNRDMSKNAFMMQKPEQHESPFQVFSNISSHLMTMVSPNVEPIKDTLLNHYNDHSNSMDLLAQLQA
******CDKLNVKKGLRRCGKSCRLRWTNYLRPDLKHESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRKKLTEMGIDPVTHKPFSQILADYGNIGGLPKSGTRIGCLN*****************************LM*************LL******************
*GRPPCCDKLNVKKGLRRCGKSCRLRWTNYLRPDLKHESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRKKLTEMG******************************************************************************************LLAQL**
MGRPPCCDKLNVKKGLRRCGKSCRLRWTNYLRPDLKHESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRKKLTEMGIDPVTHKPFSQILADYGNIGGLPKSGTRIGCLNRDMSKNAFMMQKPEQHESPFQVFSNISSHLMTMVSPNVEPIKDTLLNHYNDHSNSMDLLAQLQA
***PPCCDKLNVKKGLRRCGKSCRLRWTNYLRPDLKHESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRKKLTEMGIDPVTHKPFSQILADY*********************************************************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGRPPCCDKLNVKKGLRRCGKSCRLRWTNYLRPDLKHESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRKKLTEMGIDPVTHKPFSQILADYGNIGGLPKSGTRIGCLNRDMSKNAFMMQKPEQHESPFQVFSNISSHLMTMVSPNVEPIKDTLLNHYNDHSNSMDLLAQLQA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query187 2.2.26 [Sep-21-2011]
Q50EX6294 Protein ODORANT1 OS=Petun N/A no 0.540 0.343 0.519 2e-33
Q8GWP0 360 Transcription factor MYB3 no no 0.914 0.475 0.396 2e-32
Q9SPG2 366 Transcription factor MYB2 no no 0.470 0.240 0.647 2e-32
Q9SPG5 338 Transcription factor MYB7 no no 0.470 0.260 0.659 5e-32
Q9SZP1282 Transcription repressor M no no 0.556 0.368 0.477 7e-32
P20026267 Myb-related protein Hv1 O N/A no 0.540 0.378 0.488 2e-31
P81393232 Myb-related protein 308 O N/A no 0.556 0.448 0.477 3e-31
P80073 421 Myb-related protein Pp2 O N/A no 0.529 0.235 0.496 3e-31
Q8LPH6 352 Transcription factor MYB8 no no 0.454 0.241 0.682 3e-31
O49608274 Transcription factor MYB3 no no 0.540 0.368 0.473 4e-31
>sp|Q50EX6|ODO1_PETHY Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1 Back     alignment and function desciption
 Score =  141 bits (356), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/131 (51%), Positives = 85/131 (64%), Gaps = 30/131 (22%)

Query: 1   MGRPPCCDKLNVKKG------------------------------LRRCGKSCRLRWTNY 30
           MGR PCCDKL VKKG                              L+RCGKSCRLRWTNY
Sbjct: 1   MGRQPCCDKLGVKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNY 60

Query: 31  LRPDLKHESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRKKLTEMG 90
           LRPDLK    +  EE+++I LH+ +G+RWS IA +LPGRTDN++KN+WNT ++KKL +MG
Sbjct: 61  LRPDLKRGLLSDAEEKLVIDLHSRLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMG 120

Query: 91  IDPVTHKPFSQ 101
           IDPVTH+P  +
Sbjct: 121 IDPVTHEPLKK 131
R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development.
Petunia hybrida (taxid: 4102)
>sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1 Back     alignment and function description
>sp|Q9SPG2|MYB28_ARATH Transcription factor MYB28 OS=Arabidopsis thaliana GN=MYB28 PE=1 SV=1 Back     alignment and function description
>sp|Q9SPG5|MYB76_ARATH Transcription factor MYB76 OS=Arabidopsis thaliana GN=MYB76 PE=1 SV=1 Back     alignment and function description
>sp|Q9SZP1|MYB4_ARATH Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1 Back     alignment and function description
>sp|P20026|MYB1_HORVU Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1 Back     alignment and function description
>sp|P81393|MYB08_ANTMA Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1 Back     alignment and function description
>sp|P80073|MYB2_PHYPA Myb-related protein Pp2 OS=Physcomitrella patens subsp. patens GN=PP2 PE=2 SV=1 Back     alignment and function description
>sp|Q8LPH6|MYB86_ARATH Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1 Back     alignment and function description
>sp|O49608|MYB32_ARATH Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query187
224133346 385 predicted protein [Populus trichocarpa] 0.989 0.480 0.627 1e-68
224119168 368 predicted protein [Populus trichocarpa] 0.989 0.502 0.610 4e-67
225456610 739 PREDICTED: uncharacterized protein LOC10 0.935 0.236 0.610 6e-66
147821088 337 hypothetical protein VITISV_027593 [Viti 0.930 0.516 0.616 1e-65
297734054 306 unnamed protein product [Vitis vinifera] 0.721 0.441 0.716 2e-62
449441045 367 PREDICTED: uncharacterized protein LOC10 0.978 0.498 0.586 2e-62
147800030 333 hypothetical protein VITISV_001041 [Viti 0.673 0.378 0.653 2e-54
225452616 343 PREDICTED: transcription repressor MYB4- 0.673 0.367 0.653 2e-54
296087746 368 unnamed protein product [Vitis vinifera] 0.673 0.342 0.653 3e-54
356573440 345 PREDICTED: transcription factor MYB86-li 0.823 0.446 0.531 5e-51
>gi|224133346|ref|XP_002321544.1| predicted protein [Populus trichocarpa] gi|222868540|gb|EEF05671.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  264 bits (675), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 140/223 (62%), Positives = 162/223 (72%), Gaps = 38/223 (17%)

Query: 1   MGRPPCCDKLNVKKGL------------------------------RRCGKSCRLRWTNY 30
           M RPPCC K NVK+GL                              +RCGKSCRLRWTNY
Sbjct: 1   MVRPPCCGKFNVKRGLWTADEDAKILAHVAKHGTGNWTAVPKKAGLQRCGKSCRLRWTNY 60

Query: 31  LRPDLKHESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRKKLTEMG 90
           L PDLKH++FTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKN WN +LRKKL+EMG
Sbjct: 61  LSPDLKHDNFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNCWNARLRKKLSEMG 120

Query: 91  IDPVTHKPFSQILADYGNIGGLPKSGTRIGCLNRDMSKNAFMMQKPEQHESPF-QVFSNI 149
           IDPVTHKPFS+ILADYGNIGGL KSG+RIG L+RD+ KN F + KPEQ+ S   +  SNI
Sbjct: 121 IDPVTHKPFSKILADYGNIGGLVKSGSRIGSLSRDL-KNVFAL-KPEQYNSILPEGISNI 178

Query: 150 SSHLMT-MVSPNVEPIKDTLLNHYNDHS----NSMDLLAQLQA 187
           +SHLMT MV   +EP+++  LN +N+ S    +S+DLL QLQA
Sbjct: 179 NSHLMTRMVPRKMEPVQECFLNKFNNDSTNSNHSLDLLDQLQA 221

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224119168|ref|XP_002318003.1| predicted protein [Populus trichocarpa] gi|222858676|gb|EEE96223.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225456610|ref|XP_002266231.1| PREDICTED: uncharacterized protein LOC100258784 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147821088|emb|CAN75378.1| hypothetical protein VITISV_027593 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734054|emb|CBI15301.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449441045|ref|XP_004138294.1| PREDICTED: uncharacterized protein LOC101212214 [Cucumis sativus] gi|449477608|ref|XP_004155070.1| PREDICTED: uncharacterized protein LOC101230238 [Cucumis sativus] Back     alignment and taxonomy information
>gi|147800030|emb|CAN74972.1| hypothetical protein VITISV_001041 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225452616|ref|XP_002276072.1| PREDICTED: transcription repressor MYB4-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296087746|emb|CBI35002.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356573440|ref|XP_003554868.1| PREDICTED: transcription factor MYB86-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query187
TAIR|locus:2088957317 TDF1 "DEFECTIVE IN MERISTEM DE 0.764 0.451 0.578 1.4e-48
TAIR|locus:2161820320 MYB80 [Arabidopsis thaliana (t 0.598 0.35 0.612 3.6e-42
TAIR|locus:2139144286 MYB42 "myb domain protein 42" 0.534 0.349 0.594 5.1e-40
TAIR|locus:2141231 350 MYB102 "MYB-like 102" [Arabido 0.641 0.342 0.544 1.5e-38
TAIR|locus:2075387 321 MYB107 "myb domain protein 107 0.711 0.414 0.510 4.5e-38
TAIR|locus:2132584266 MYB85 "myb domain protein 85" 0.588 0.413 0.558 5.7e-38
TAIR|locus:2150891 326 MYB16 "myb domain protein 16" 0.459 0.263 0.709 7.3e-38
TAIR|locus:2171845310 MYB53 "myb domain protein 53" 0.759 0.458 0.439 1e-37
TAIR|locus:2149000 336 MYB9 "myb domain protein 9" [A 0.914 0.508 0.428 1.2e-37
TAIR|locus:2023951 365 MYB93 "myb domain protein 93" 0.475 0.243 0.617 1.3e-37
TAIR|locus:2088957 TDF1 "DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 437 (158.9 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
 Identities = 88/152 (57%), Positives = 109/152 (71%)

Query:    13 KKGLRRCGKSCRLRWTNYLRPDLKHESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDN 72
             K GL RCGKSCRLRWTNYLRPDLKH+SF+ QEEE+II  H AIGSRWS IA++LPGRTDN
Sbjct:    43 KAGLNRCGKSCRLRWTNYLRPDLKHDSFSTQEEELIIECHRAIGSRWSSIARKLPGRTDN 102

Query:    73 DVKNYWNTKLRKKLTEMGIDPVTHKPFSQILADYGNIGGLPKSGTRIGCLNRDM---SKN 129
             DVKN+WNTKL+KKL +MGIDPVTHKP SQ+LA++ NI G   +  +    N  +   S +
Sbjct:   103 DVKNHWNTKLKKKLMKMGIDPVTHKPVSQLLAEFRNISGHGNASFKTEPSNNSILTQSNS 162

Query:   130 AFMMQK--PEQHESPF----QVFSNISSHLMT 155
             A+ M +     HES +     +F+N S +  T
Sbjct:   163 AWEMMRNTTTNHESYYTNSPMMFTNSSEYQTT 194
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0048658 "tapetal layer development" evidence=IMP
GO:0055046 "microgametogenesis" evidence=IMP
TAIR|locus:2161820 MYB80 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139144 MYB42 "myb domain protein 42" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141231 MYB102 "MYB-like 102" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075387 MYB107 "myb domain protein 107" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132584 MYB85 "myb domain protein 85" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2150891 MYB16 "myb domain protein 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171845 MYB53 "myb domain protein 53" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149000 MYB9 "myb domain protein 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2023951 MYB93 "myb domain protein 93" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
MYB198
hypothetical protein (368 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query187
PLN03091 459 PLN03091, PLN03091, hypothetical protein; Provisio 2e-42
PLN03212249 PLN03212, PLN03212, Transcription repressor MYB5; 1e-37
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 7e-12
COG5147 512 COG5147, REB1, Myb superfamily proteins, including 2e-10
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 2e-10
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 7e-10
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 1e-07
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 0.002
>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional Back     alignment and domain information 
 Score =  147 bits (372), Expect = 2e-42
 Identities = 67/132 (50%), Positives = 82/132 (62%), Gaps = 30/132 (22%)

Query: 1   MGRPPCCDKLNVKKGL------------------------------RRCGKSCRLRWTNY 30
           MGR  CC K  ++KGL                              +RCGKSCRLRW NY
Sbjct: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60

Query: 31  LRPDLKHESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRKKLTEMG 90
           LRPDLK  +F+ QEE +II LHA +G+RWS IA QLPGRTDN++KN WN+ L+KKL + G
Sbjct: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120

Query: 91  IDPVTHKPFSQI 102
           IDP THKP S++
Sbjct: 121 IDPNTHKPLSEV 132

Length = 459
>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 187
PLN03091 459 hypothetical protein; Provisional 99.97
PLN03212249 Transcription repressor MYB5; Provisional 99.96
KOG0048238 consensus Transcription factor, Myb superfamily [T 99.96
PLN03212249 Transcription repressor MYB5; Provisional 99.78
KOG0048238 consensus Transcription factor, Myb superfamily [T 99.77
PLN03091 459 hypothetical protein; Provisional 99.7
KOG0049 939 consensus Transcription factor, Myb superfamily [T 99.67
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 99.6
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 99.54
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 99.38
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 99.27
KOG0049 939 consensus Transcription factor, Myb superfamily [T 99.21
COG5147 512 REB1 Myb superfamily proteins, including transcrip 99.12
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 99.02
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 98.84
COG5147 512 REB1 Myb superfamily proteins, including transcrip 98.63
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 98.58
KOG0051607 consensus RNA polymerase I termination factor, Myb 98.58
KOG0051607 consensus RNA polymerase I termination factor, Myb 98.54
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 97.89
KOG0457 438 consensus Histone acetyltransferase complex SAGA/A 97.76
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 97.7
PF0891465 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150 97.69
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 97.32
COG5259 531 RSC8 RSC chromatin remodeling complex subunit RSC8 96.89
KOG1279 506 consensus Chromatin remodeling factor subunit and 96.76
PRK13923170 putative spore coat protein regulator protein YlbO 96.65
COG5114 432 Histone acetyltransferase complex SAGA/ADA, subuni 96.54
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 96.46
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 96.22
PF09111118 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain 95.4
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 93.76
PF1277696 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; 93.56
KOG2656 445 consensus DNA methyltransferase 1-associated prote 92.95
KOG4282 345 consensus Transcription factor GT-2 and related pr 92.8
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 91.65
PF13325199 MCRS_N: N-terminal region of micro-spherule protei 91.44
PF0828154 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013 90.89
COG5118507 BDP1 Transcription initiation factor TFIIIB, Bdp1 90.88
PLN031421033 Probable chromatin-remodeling complex ATPase chain 89.91
KOG1194 534 consensus Predicted DNA-binding protein, contains 83.39
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 82.16
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information 
Probab=99.97  E-value=5.4e-31  Score=233.06  Aligned_cols=102  Identities=66%  Similarity=1.226  Sum_probs=95.9

Q ss_pred             CCCcchhhHhhhcc------------------------------CCCCChHHHHHHHHhhhCCCCCCCCCCHHHHHHHHH
Q 038824            1 MGRPPCCDKLNVKK------------------------------GLRRCGKSCRLRWTNYLRPDLKHESFTPQEEEMIIR   50 (187)
Q Consensus         1 ~~~~~~~~~~~~~~------------------------------g~~Rt~~qCr~RW~~~L~P~l~k~~wT~eED~~Ll~   50 (187)
                      |||++||+|..+++                              |++|+++|||+||.+||+|+|++++||+|||++|++
T Consensus         1 mgr~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLe   80 (459)
T PLN03091          1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE   80 (459)
T ss_pred             CCCCccCcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHH
Confidence            99999999999888                              468999999999999999999999999999999999


Q ss_pred             HHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCCCCCCCcchHHHH
Q 038824           51 LHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLRKKLTEMGIDPVTHKPFSQI  102 (187)
Q Consensus        51 ~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~~~~~~~~~t~~~~~~~~~~  102 (187)
                      +|..||++|..||++|||||+++|||||+.+|+++++..++.+.+++++.+.
T Consensus        81 L~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKklr~~~I~p~t~kpl~e~  132 (459)
T PLN03091         81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEV  132 (459)
T ss_pred             HHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCcccc
Confidence            9999999999999999999999999999999999999888888777776543

>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains Back     alignment and domain information
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>PF13325 MCRS_N: N-terminal region of micro-spherule protein Back     alignment and domain information
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription Back     alignment and domain information
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription] Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query187
1h8a_C128 Crystal Structure Of Ternary Protein-Dna Complex3 L 1e-16
1a5j_A110 Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe 1e-16
1h88_C159 Crystal Structure Of Ternary Protein-Dna Complex1 L 2e-16
1mse_C105 Solution Structure Of A Specific Dna Complex Of The 2e-16
1gv2_A105 Crystal Structure Of C-Myb R2r3 Length = 105 2e-16
3zqc_A131 Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin 3e-15
3osf_A126 The Structure Of Protozoan Parasite Trichomonas Vag 1e-10
1idy_A54 Structure Of Myb Transforming Protein, Nmr, Minimiz 1e-09
1mbj_A53 Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53 1e-09
2k9n_A107 Solution Nmr Structure Of The R2r3 Dna Binding Doma 3e-08
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128 Back     alignment and structure 
Iteration: 1

 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 52/69 (75%)
Query: 18  RCGKSCRLRWTNYLRPDLKHESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNY 77
           R GK CR RW N+L P++K  S+T +E+ +I + H  +G+RW+ IA+ LPGRTDN VKN+
Sbjct: 60  RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNH 119
Query: 78  WNTKLRKKL 86
           WN+ +R+K+
Sbjct: 120 WNSTMRRKV 128
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110 Back     alignment and structure
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159 Back     alignment and structure
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105 Back     alignment and structure
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105 Back     alignment and structure
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131 Back     alignment and structure
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126 Back     alignment and structure
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54 Back     alignment and structure
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53 Back     alignment and structure
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query187
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 3e-46
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 2e-45
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 8e-45
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 7e-44
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 2e-39
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 2e-38
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 2e-10
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 4e-04
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 2e-09
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 4e-07
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 9e-07
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 2e-06
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 1e-05
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 5e-05
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 2e-04
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 7e-04
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131 Back     alignment and structure
 Score =  147 bits (373), Expect = 3e-46
 Identities = 33/81 (40%), Positives = 51/81 (62%)

Query: 18  RCGKSCRLRWTNYLRPDLKHESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNY 77
           R  K CR RW N+L P +   ++TP+E+E I R +  +GS+WS+IA+ +PGRTDN +KN 
Sbjct: 35  RSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNR 94

Query: 78  WNTKLRKKLTEMGIDPVTHKP 98
           WN+ + K+++          P
Sbjct: 95  WNSSISKRISTNSNHKEILLP 115
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126 Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52 Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60 Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query187
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 99.96
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 99.95
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 99.94
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 99.94
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 99.94
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 99.93
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 99.92
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 99.9
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 99.84
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 99.84
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 99.82
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 99.82
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 99.81
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 99.81
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 99.79
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 99.79
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 99.78
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 99.76
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 99.76
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 99.76
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 99.72
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 99.71
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 99.71
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 99.68
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 99.67
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 99.48
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 99.64
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 99.6
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 99.57
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 99.57
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 99.53
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 99.51
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 99.48
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 99.42
2cjj_A93 Radialis; plant development, DNA-binding protein, 99.38
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 99.35
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 99.27
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 99.25
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 99.18
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 99.09
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 98.9
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 98.85
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 98.8
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 98.78
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 98.69
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 98.41
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 98.38
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 97.7
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 98.27
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 98.27
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 98.26
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 98.21
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 98.17
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 98.12
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 98.05
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 97.88
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 97.88
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 97.84
2crg_A70 Metastasis associated protein MTA3; transcription 97.82
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 97.71
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 97.63
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 97.56
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 97.56
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 97.4
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 97.39
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 97.13
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 96.98
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 96.37
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 96.19
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 95.66
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 94.34
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 94.99
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 94.82
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 94.71
2cjj_A93 Radialis; plant development, DNA-binding protein, 93.74
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 93.38
2y9y_A374 Imitation switch protein 1 (DEL_ATPase); transcrip 92.34
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 92.2
2xag_B 482 REST corepressor 1; amine oxidase, chromatin regul 92.06
2xb0_X270 Chromo domain-containing protein 1; hydrolase, DNA 91.64
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 90.55
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 86.77
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
Probab=99.96  E-value=6.5e-30  Score=194.06  Aligned_cols=103  Identities=23%  Similarity=0.410  Sum_probs=79.9

Q ss_pred             hccCCCCChHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCC
Q 038824           12 VKKGLRRCGKSCRLRWTNYLRPDLKHESFTPQEEEMIIRLHAAIGS-RWSIIAQQLPGRTDNDVKNYWNTKLRKKLTEMG   90 (187)
Q Consensus        12 ~~~g~~Rt~~qCr~RW~~~L~P~l~k~~wT~eED~~Ll~~v~~~G~-~W~~Ia~~lpgRt~~q~k~rw~~~l~~~~~~~~   90 (187)
                      ...++|||++||++||.++|+|++++++||+|||++|+++|..||. +|..||..|||||+.||++||..+|+|.+.+++
T Consensus         2 a~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~   81 (128)
T 1h8a_C            2 EAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTS   81 (128)
T ss_dssp             --------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSC
T ss_pred             ccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccccc
Confidence            4567899999999999999999999999999999999999999995 799999999999999999999999999999999


Q ss_pred             CCCCCcchHHHHHHHhcCCCCCCC
Q 038824           91 IDPVTHKPFSQILADYGNIGGLPK  114 (187)
Q Consensus        91 ~t~~~~~~~~~~~~~~g~~~~~~~  114 (187)
                      ||++|+..+..++..+|+.|+.++
T Consensus        82 WT~eEd~~L~~~~~~~G~~W~~Ia  105 (128)
T 1h8a_C           82 WTEEEDRIIYQAHKRLGNRWAEIA  105 (128)
T ss_dssp             CCHHHHHHHHHHHHHHCSCHHHHG
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHH
Confidence            999999999999999999887655
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 187
d1gv2a247 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou 2e-13
d1gv2a247 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou 0.003
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 1e-12
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 2e-07
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 2e-11
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 1e-10
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 3e-10
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 3e-05
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 4e-09
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 8e-07
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 5e-09
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 3e-06
d2ckxa183 a.4.1.3 (A:578-660) Telomere binding protein TBP1 8e-08
d2cqra160 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 2e-07
d2cjja163 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti 2e-07
d1ug2a_95 a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu 2e-06
d1w0ua_55 a.4.1.4 (A:) Telomeric repeat binding factor 2, TR 1e-05
d1w0ua_55 a.4.1.4 (A:) Telomeric repeat binding factor 2, TR 0.002
d1w0ta_52 a.4.1.4 (A:) DNA-binding domain of human telomeric 9e-05
d1x41a147 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T 6e-04
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.8 bits (145), Expect = 2e-13
 Identities = 22/45 (48%), Positives = 35/45 (77%)

Query: 39 SFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLR 83
          S+T +E+ +I + H  +G+RW+ IA+ LPGRTDN +KN+WN+ +R
Sbjct: 3  SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47 Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83 Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95 Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query187
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.79
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.79
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 99.78
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.73
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 99.63
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 99.62
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 99.61
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 99.55
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 99.51
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 99.47
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 99.45
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 99.38
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 99.34
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 99.3
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 99.15
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 98.62
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 98.42
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 98.37
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 98.32
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 98.27
d1fexa_59 Rap1 {Human (Homo sapiens) [TaxId: 9606]} 97.82
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 97.7
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 97.54
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 97.23
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 97.07
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 96.92
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 96.9
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 96.59
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 96.46
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 96.32
d1ofcx2128 SLIDE domain of the nucleosome remodeling ATPase I 95.13
d1wgxa_73 Hypothetical protein C14orf106 (KIAA1903) {Human ( 95.13
d1ofcx152 SANT domain of the nucleosome remodeling ATPase IS 94.29
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 87.27
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 84.85
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=4.8e-20  Score=115.57  Aligned_cols=47  Identities=47%  Similarity=0.924  Sum_probs=45.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhh
Q 038824           37 HESFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLR   83 (187)
Q Consensus        37 k~~wT~eED~~Ll~~v~~~G~~W~~Ia~~lpgRt~~q~k~rw~~~l~   83 (187)
                      |++||+|||++|+++|.+||++|+.||.+|||||+++||+||+.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999999875
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure